Citrus Sinensis ID: 038592

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------48
Protein Sequence
MALDMGMFETINPSRFITFTIPSPPLSHHNHHNDNHLLRVAVLDSPVQLSDSLAQPQVALMFVPKHREHDWIFSTESGHLQLLLSCHQFSRLILIGDEPTTDDSPDLPITTKHDSFDQKSLEDSVKPLVIALSRKFCFDKNGIYNVPLLSYEDNVVSSVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGVLVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEFRDVFQELYEIDVGNEENFVLIATGLSIVSSGSDCENAFGKKLRLLISGEYMDSIRKI
Secondary Structure (PSIPRED)
cccccccccccccccEEEEEccccccccccccccccEEEEEEEccccccccccccccEEEEEEEccccccEEEccHHHHHHHHHHcccccEEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEEEEEccccccEEEEEEEEccccccccccEEEEEEEccccccEEEEEEEcccccccccccccccEEEEEccccEEccccHHHHHHHHHHHccccccccccccccEEEEEEccHHHHHHHHHHccccEEEEEEccHHHHHHHHHHccccccccEEEEEccHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEEcccccccccccccccccccHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHHHHHccccEEEEcccccEEEEEEEccccccccccHHHHHHHHHHHHHHcHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHcccccEEEEEccccccccccccccccEEEEEEEEcccccccccccccEEEEEEcccccccHHEccHHHHHHHHHHcccccEEEEEEEcccccccccEEEccccccccHHHHHHHHHHHHHHHccccccccccccccEEEEEcccccEEEEEEEEcccccccEEEEEEEEccccccccccEEEEEEEEccccEEEEEEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEccHHHHHHHHHHHccccEEEEEccHHHHHHHHHHccccccccEEEEEccHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEccccccccccccccHHHccHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHHHHHHEEEEccccccEEEEEEcccccccccccccHHHHHccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
maldmgmfetinpsrfitftipspplshhnhhndnHLLRVAVldspvqlsdslaqpqvalmfvpkhrehdwifsteSGHLQLLLSCHQFSRLiligdepttddspdlpittkhdsfdqksledSVKPLVIALSRKFcfdkngiynvpllsyednVVSSVVLEKCVGDFAGEMLVEDveieseggcrkrEFRRRlrfkrmpnlvqTEVKLVPEAaisldsvkiggkvrfrphiGVLVHVYLVPMVASCALIGSYIgerirfgfrpkalcvgvGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQyfgledgeflQVSVGDAIEFLEKLARQIvgknpdsfgacslkdgnfldnsdrvdnkFDVIMVDldsgdarngtsappvefVRKDVLLAARLILSDFGIfvmnvippnrsfYDMLIQEFRDVFQELYeidvgneeNFVLIATGLsivssgsdcenAFGKKLRLLISGEYMDSIRKI
Flexible Loop (DISEMBL)
MALDMGMFETINPSRFITFTIPSPPLSHHNHHNDNHLLRVAVLDSPVQLSDSLAQPQVALMFVPKHREHDWIFSTESGHLQLLLSCHQFSRLILIGDEPTTDDSPDLPITtkhdsfdqksledSVKPLVIALSRKFCFDKNGIYNVPLLSYEDNVVSSVVLEKCVGDFAGEMLvedveieseggcrkrefrrrlrfkrmpnlvqtevklvpeaaisldsvkiggKVRFRPHIGVLVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDsgdarngtsappvefVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEFRDVFQELYEIDVGNEENFVLIATGLSIVSSGSDCENAFGKKlrllisgeymdsirki
Low Complexity Region (SEG)
MALDMGMFETINPSRFITFTIpspplshhnhhndnhllRVAVLDSPVQLSDSLAQPQVALMFVPKHREHDWIFSTESGHLQLLLSCHQFSRLILIGDEPTTDDSPDLPITTKHDSFDQKSLEDSVKPLVIALSRKFCFDKNGIYNVPLLSYEDNVVSSVVLEKCVGDFAGEMLVEDVEIESEGGCrkrefrrrlrfkrMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGVLVHVYLVPMVASCALIGSYIGERIRFGFRPKALCvgvgggALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEFRDVFQELYEIDVGNEENFVLIATGLSIVSSGSDCENAFGKKLRLLISGEYMDSIRKI
Disordered region (IsUnstruct)
*******FETINPSRFITFTIP*********HNDNHLLRVAVLDSPVQLSDSLAQPQVALMFVPKHREHDWIFSTESGHLQLLLSCHQFSRLILIG****************************VKPLVIALSRKFCFDKNGIYNVPLLSYEDNVVSSVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGVLVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDS*********PPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEFRDVFQELYEIDVGNEENFVLIATGLSIVSSGSDCENAFGKKLRLLISGEY*******
Disordered Region (DISOPRED)
***D*GMFETINPSRFITFTIPSPPLSHHNHHNDNHLLRVAVLDSPVQLSDSLAQPQVALMFVPKHREHDWIFSTESGHLQLLLSCHQFSRLILIGDEPTTDDSPDL************SLEDSVKPLVIAL***********YNVPLLSYEDNVVSSVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLD**KIGGKVRFRPHIGVLVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEFRDVFQELYEIDVGNEENFVLIATGLSI*************KLRLLISGEYMDSIRKI
Disordered Region (DISEMBL)
MALDMGMFETINPSRFITFTIPSPPLSHHNHHNDNHLLRVAVLDSPVQLSDSLAQPQVALMFVPKHREHDWIFSTESGHLQLLLSCHQFSRLILIGDEPTTDDSPDLPITTKHDSFDQKSLEDSVKPLVIALSRKFCFDKNGIYNVPLLSYEDNVVSSVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGVLVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEFRDVFQELYEIDVGNEENFVLIATGLSIVSSGSDCENAFGKKLRLLISGEYMDSIRKI
Disordered Region (DISPRO)
*ALDMGMFETINPSRFITFTIPSPPLSHHNHHNDNHLLRVAVLDSPVQLSDSLAQPQVALMFVPKHREHDWIFSTESGHLQLLLSCHQFSRLILIGDEPTTDDSPDLPITTKHDSFDQKSLEDSVKPLVIALSRKFCFDKNGIYNVPLLSYEDNVVSSVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEA*************RFRPHIGVLVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQ***************************NKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEFRDVFQELYEIDVGNEENFVLIATGLSIVSSGSDCENAFGKKLRLLISGEYMDSIRKI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALDMGMFETINPSRFITFTIPSPPLSHHNHHNDNHLLRVAVLDSPVQLSDSLAQPQVALMFVPKHREHDWIFSTESGHLQLLLSCHQFSRLILIGDEPTTDDSPDLPITTKHDSFDQKSLEDSVKPLVIALSRKFCFDKNGIYNVPLLSYEDNVVSSVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGVLVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEFRDVFQELYEIDVGNEENFVLIATGLSIVSSGSDCENAFGKKLRLLISGEYMDSIRKI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	478	2.2.26 [Sep-21-2011]
Q6NTR1	693	Methyltransferase-like pr	N/A	no	0.709	0.489	0.265	7e-20
A5PK19	699	Methyltransferase-like pr	yes	no	0.698	0.477	0.248	8e-19
Q8N6R0	699	Methyltransferase-like pr	no	no	0.700	0.479	0.246	2e-17
Q91YR5	698	Methyltransferase-like pr	yes	no	0.696	0.477	0.243	7e-16
A5WVX1	690	Methyltransferase-like pr	yes	no	0.692	0.479	0.265	1e-14
Q29LW1	673	Methyltransferase-like pr	yes	no	0.640	0.454	0.257	8e-12
Q9VIK9	673	Methyltransferase-like pr	yes	no	0.635	0.451	0.253	2e-10
Q8D3Q3	299	Spermidine synthase OS=Vi	no	no	0.311	0.498	0.252	7e-05
Q7MF74	300	Spermidine synthase OS=Vi	no	no	0.288	0.46	0.256	9e-05

>sp|Q6NTR1|MET13_XENLA Methyltransferase-like protein 13 OS=Xenopus laevis GN=mettl13 PE=2 SV=1

 Score = 99.0 bits (245), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 113/426 (26%), Positives = 179/426 (42%), Gaps = 87/426 (20%)

Query: 42  VLDSP-VQLSDSLAQPQVALMFVPKHREHDWIFSTESGHLQLLLSCHQFSRLILIGDEPT 100
           ++DSP V+LS S      A+  +P  RE +W+F +E G  QL  S   F+RLI++     
Sbjct: 284 IVDSPAVRLSHS---NHFAIFIIPHGRETEWLFGSEQGRKQLAGSVG-FNRLIIVA---- 335

Query: 101 TDDSPDLPITTKHDSFDQKSLEDSVKPLVIALSRKFCFDKNGIYNVPLLSYEDNVVSSVV 160
                   +       D K+++  +   V+ L+     D      +P LS  +++ S  +
Sbjct: 336 --------LHRDQQYTDMKAIQSELSAKVLELAPPGLPDNQ---QIPFLSAGEDIGSRTI 384

Query: 161 LEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSV 220
             +   +F+GE +VEDV  +           RRL F    N+VQ+E +L+P       S 
Sbjct: 385 QHRGKSEFSGEYVVEDVRGDGNSS------YRRLIFLSNQNVVQSEARLLP------IST 432

Query: 221 KIGGKVRF-------------RPHIGVLVHVYLV-----PMVASCALIGSYIGERIRFGF 262
            IG K R              +P I  +   YL       M++  AL+ +        G 
Sbjct: 433 HIGQKKRKDKKKQQKPVKDLEQPTITRIDKSYLCCEHHKAMISGLALLPNP-------GL 485

Query: 263 RPKA----LCVGVGGGALVSFLRTQLDFEVVGV-EMDEVVLRVARQYFGLEDGEFLQVSV 317
            P+     L +G+GGG+L  F+        V V E+D  VL VA  +F     E ++V +
Sbjct: 486 LPECQASVLVIGLGGGSLSLFIHDYFPGSRVEVVEIDPSVLDVASNWFNFCQDERMKVHL 545

Query: 318 GDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTS 377
            D +  +  LA        D+  AC                 +DVIM D+DS D   G S
Sbjct: 546 ADGLVHINSLA--------DNGEAC-----------------YDVIMFDVDSKDPSVGMS 580

Query: 378 APPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEFRDVFQELYEIDVGNEE 437
            PP  FV K  L     IL+  G+F++N++  +      ++    +VF  +Y   +  E 
Sbjct: 581 CPPPAFVEKMFLQNVHNILNANGVFILNLVCRDTDLRLKVLNVLHEVFPLIYAQKIDEEV 640

Query: 438 NFVLIA 443
           N +L  
Sbjct: 641 NEILFC 646

Xenopus laevis (taxid: 8355)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|A5PK19|MET13_BOVIN Methyltransferase-like protein 13 OS=Bos taurus GN=METTL13 PE=2 SV=1

 Score = 95.5 bits (236), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 99/399 (24%), Positives = 167/399 (41%), Gaps = 65/399 (16%)

Query: 59  ALMFVPKHREHDWIFSTESGHLQLLLSCHQFSRLILIGDEPTTDDSPDLPITTKHDSFDQ 118
           A+  +P+ RE +W+F  E G  QL  S   F RLI +           L    +++  D 
Sbjct: 301 AIFIIPQGRETEWLFGMEEGRKQLAASAG-FRRLITVA----------LHRGQQYEGMDS 349

Query: 119 KSLEDSVKPLVIALSRKFCFDKNGIYNVPLLSYEDNVVSSVVLEKCVGDFAGEMLVEDVE 178
              E S + + +A +            VP LS   ++   +V  +     +G+ ++EDV+
Sbjct: 350 IQAELSARVMELAPA-----GMPAQLQVPFLSVGGDIGVRIVQHQACSPLSGDYVIEDVQ 404

Query: 179 IESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPH------- 231
                G  KR FRR L F    N+VQ+E +L+ + +      +   + + RP        
Sbjct: 405 -----GDDKRYFRR-LIFLSNRNVVQSEARLLQDVSHRAQKKRKKDRKKHRPADTPEDLP 458

Query: 232 --------IGVLVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQ 283
                      L   +   M+A  AL+ +     +        L VG+GGG+L  F+   
Sbjct: 459 AAQGQSIDKSYLCCEHHKAMIAGLALLKN---PELLLETPLALLVVGLGGGSLPLFIHDH 515

Query: 284 LDFEVV-GVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342
                +  VE+D  +L VA Q+FG    + ++V + D ++F+ +LA              
Sbjct: 516 FPKSCIHAVEIDPSMLEVATQWFGFSQSDRMKVHIADGLDFITRLA-------------- 561

Query: 343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIF 402
                      +     +DVIM D+DS D   G S PP  FV +  L   + IL+  G+F
Sbjct: 562 ----------EEEARPHYDVIMFDVDSKDPTLGMSCPPPAFVAQLFLQKVKSILTPEGVF 611

Query: 403 VMNVIPPNRSFYDMLIQEFRDVFQELYEIDVGNEENFVL 441
           ++N++  +    D ++   + VF  LY   +  E N +L
Sbjct: 612 ILNLVCRDLGLKDSVLAGLKAVFPLLYVRRIEGEVNEIL 650

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q8N6R0|MET13_HUMAN Methyltransferase-like protein 13 OS=Homo sapiens GN=METTL13 PE=1 SV=1

 Score = 90.9 bits (224), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 98/398 (24%), Positives = 165/398 (41%), Gaps = 63/398 (15%)

Query: 59  ALMFVPKHREHDWIFSTESGHLQLLLSCHQFSRLILIGDEPTTDDSPDLPITTKHDSFDQ 118
           A+  +P+ RE +W+F  + G  QL  S   F RLI +           L    +++S D 
Sbjct: 301 AIFIIPQGRETEWLFGMDEGRKQLAASAG-FRRLITVA----------LHRGQQYESMDH 349

Query: 119 KSLEDSVKPLVIALSRKFCFDKNGIYNVPLLSYEDNVVSSVVLEKCVGDFAGEMLVEDVE 178
              E S + + +A +            VP LS   ++    V  +     +G+ ++EDV+
Sbjct: 350 IQAELSARVMELAPA-----GMPTQQQVPFLSVGGDIGVRTVQHQDCSPLSGDYVIEDVQ 404

Query: 179 IESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPH------- 231
                G  KR FRR L F    N+VQ+E +L+ + +      +   + + RP        
Sbjct: 405 -----GDDKRYFRR-LIFLSNRNVVQSEARLLKDVSHKAQKKRKKDRKKQRPADAEDLPA 458

Query: 232 -------IGVLVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQL 284
                     L   +   M+A  AL+ +     +        L VG+GGG+L  F+    
Sbjct: 459 APGQSIDKSYLCCEHHKAMIAGLALLRN---PELLLEIPLALLVVGLGGGSLPLFVHDHF 515

Query: 285 DFEVV-GVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACS 343
               +  VE+D  +L VA Q+FG    + ++V + D ++++  LA               
Sbjct: 516 PKSCIDAVEIDPSMLEVATQWFGFSQSDRMKVHIADGLDYIASLA--------------- 560

Query: 344 LKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFV 403
                           +DVIM D+DS D   G S PP  FV +  L   + IL+  G+F+
Sbjct: 561 --------GGGEARPCYDVIMFDVDSKDPTLGMSCPPPAFVEQSFLQKVKSILTPEGVFI 612

Query: 404 MNVIPPNRSFYDMLIQEFRDVFQELYEIDVGNEENFVL 441
           +N++  +    D ++   + VF  LY   +  E N +L
Sbjct: 613 LNLVCRDLGLKDSVLAGLKAVFPLLYVRRIEGEVNEIL 650

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q91YR5|MET13_MOUSE Methyltransferase-like protein 13 OS=Mus musculus GN=Mettl13 PE=1 SV=1

 Score = 85.5 bits (210), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 97/399 (24%), Positives = 164/399 (41%), Gaps = 66/399 (16%)

Query: 59  ALMFVPKHREHDWIFSTESGHLQLLLSCHQFSRLILIGDEPTTDDSPDLPITTKHDSFDQ 118
           A+  +P+ RE +W+F  E G  QL  S   F RL+ +             +         
Sbjct: 301 AIFIIPQGRETEWLFGMEEGRKQLAASAG-FRRLVTVA------------LHRGQRYAGM 347

Query: 119 KSLEDSVKPLVIALSRKFCFDKNGIYNVPLLSYEDNVVSSVVLEKCVGDFAGEMLVEDVE 178
           +S++  +   V+ L+      +     VP LS   ++    V  +     +G+ ++EDV+
Sbjct: 348 ESIQAELSARVMELAPAGLPPQQ---QVPFLSVGGDIGVRTVQHQDHSALSGDYVIEDVQ 404

Query: 179 IESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVR---------FR 229
            E       R + RRL F    N+VQ+E +L+ + +      +   + +         F 
Sbjct: 405 GED------RWYFRRLIFLSNRNVVQSEARLLKDTSHRAQKKRKKDRKKQRPADTSEDFP 458

Query: 230 PHIGVLV-HVYLV-----PMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQ 283
           P  G  +   YL       MVA  AL+ +              L VG+GGG+L  F+   
Sbjct: 459 PAPGQSIDKSYLCCEHHKAMVAGLALLRNPELLLETPL---TLLVVGLGGGSLPLFVHDH 515

Query: 284 L-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342
                +  VE+D  +L VA Q+FG    + ++V + D ++++  LA    G+ P      
Sbjct: 516 FPKSRIDAVEIDPTMLEVATQWFGFSQSDRMKVHIADGLDYITSLA----GEAPP----- 566

Query: 343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIF 402
                            +DVIM D+DS D   G S PP  FV +  L   + IL   G+F
Sbjct: 567 ----------------HYDVIMFDVDSKDPTLGMSCPPPAFVDQVFLQKVKSILCHDGVF 610

Query: 403 VMNVIPPNRSFYDMLIQEFRDVFQELYEIDVGNEENFVL 441
           ++N++  +    D ++   +  F  LY   +  E N +L
Sbjct: 611 ILNLVCRDVRLKDSVLAGLKAAFPLLYVRRIEGEVNEIL 649

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A5WVX1|MET13_DANRE Methyltransferase-like protein 13 OS=Danio rerio GN=mettl13 PE=2 SV=1

 Score = 81.6 bits (200), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 106/399 (26%), Positives = 172/399 (43%), Gaps = 68/399 (17%)

Query: 59  ALMFVPKHREHDWIFSTESGHLQLLLSCHQFSRLILIGDEPTTDDSPDLPITTKHDSFDQ 118
           A+  VP+ RE DW++ +  G  QL  S  +F RL+++             +    +  D 
Sbjct: 295 AIFIVPQGRESDWLYGSAEGRAQLA-SSAKFRRLVIVA------------MHRDQEYEDM 341

Query: 119 KSLEDSVKPLVIALSRKFCFDKNGIYNVPLLSYEDNVVSSVVLEKCVGDFAGEMLVEDVE 178
           ++++  + P+V+ L+            VP LS   ++    V+ + +    GE  VEDV 
Sbjct: 342 QAVQSELSPVVMELAPP---GMPANQQVPFLSVGGDLGWREVIGRGLSALTGEYSVEDVR 398

Query: 179 IESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHI------ 232
            E           RRL F     LVQ+E +L   AA S  S K   K   +P        
Sbjct: 399 GEDG------YLYRRLIFMNNSQLVQSESRLQSAAAASSASKKKNKKKAKQPASTGAKDR 452

Query: 233 ----GVLVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALV-SFLRTQLDF- 286
               G L   +   MVA  A++G    + I    +P ++ +   GG  +  F+R   DF 
Sbjct: 453 SVDRGFLCCTHHEVMVAGLAMLGM---DAINNKDQPVSVLLVGLGGGGLPQFVR---DFV 506

Query: 287 ---EVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACS 343
               V  VE+D VVL VA+ +FG +  + L+V++GD ++ +  L         +S G   
Sbjct: 507 PCARVEVVELDPVVLDVAQTWFGFQIDDRLKVTLGDGLDHITTL---------ESEG--- 554

Query: 344 LKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFV 403
                        +  FDVIM D+DS D   G S PP  FV   +L     +LS  G+F+
Sbjct: 555 -------------ERYFDVIMFDVDSKDTTLGMSCPPPAFVETSLLKKVYSLLSPRGLFM 601

Query: 404 MNVIPPNRSFYDMLIQEFRDVFQELYEIDVGNEENFVLI 442
           +N++  + +    ++     VF  ++   +  E N VL+
Sbjct: 602 LNLVCRDSALRKSVLDRVHSVFPCVFSRGIEGEVNEVLL 640

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q29LW1|MTE13_DROPS Methyltransferase-like protein 13 OS=Drosophila pseudoobscura pseudoobscura GN=GA15401 PE=3 SV=1

 Score = 72.4 bits (176), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 96/373 (25%), Positives = 152/373 (40%), Gaps = 67/373 (17%)

Query: 57  QVALMFVPKHREHDWIFSTESGHLQLLLSCHQFSRLILIGDEPTTDDSPDLPITTKHDSF 116
           + A   VP+ RE +W+F T SG  +L  S  +F RL ++               T H   
Sbjct: 297 KYAAFIVPQGREIEWLFGTPSGRKKLQASA-KFQRLAVV---------------TLHRDQ 340

Query: 117 DQKSLEDSVKPLVIALSRKFCFDKNG-IYNVPLLSYEDNVVSSVVLEKCVGDFAGEMLVE 175
              +LE+    L   +   F    +G I  +P LS   +V     L       +GE  +E
Sbjct: 341 VYNTLEEVQAELGDTV---FSLAPHGHIKQIPYLSLGSDVGKRETLISGFSKISGEFRIE 397

Query: 176 DVEIESEGGCRKREFRRRLRFKRMPNLVQTE--VKLVPEAAISLDSVKIGGKVRFRPHIG 233
           +VE    GG    +  RRL F     +VQ+E  VK +             G +  + H+ 
Sbjct: 398 EVEA---GG----KTLRRLIFLSNQFVVQSEALVKTIKIKGKKERKKIDFGYLACQHHLY 450

Query: 234 VLVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQL-DFEVVGVE 292
           + V V L   +           +  +   +   L +G+GGG L SFL   L    +  VE
Sbjct: 451 MSVGVQLATTL-----------QNPKKDVQKDVLVIGLGGGGLCSFLHAALPQSRITAVE 499

Query: 293 MDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDN 352
           +D ++L VA QYF L+  +   V + D + F+E+   +                      
Sbjct: 500 IDPIMLEVAEQYFELKQDKRFHVVIDDGLAFVERCRNE---------------------- 537

Query: 353 SDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRS 412
               D  FD ++ D+DS D   G S PP  F+  DVLL  + I+   G+F++N++  + +
Sbjct: 538 ----DIHFDAVLFDVDSKDLSLGMSCPPQGFLAHDVLLHIKEIIGPKGLFMLNLVCRDET 593

Query: 413 FYDMLIQEFRDVF 425
                I   + VF
Sbjct: 594 LKTEAIANLQKVF 606

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9VIK9|MET13_DROME Methyltransferase-like protein 13 OS=Drosophila melanogaster GN=CG2614 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 95/375 (25%), Positives = 152/375 (40%), Gaps = 71/375 (18%)

Query: 57  QVALMFVPKHREHDWIFSTESGHLQLLLSCHQFSRLILIGDEPTTDDSPDLPITTKHDSF 116
           + A   VP+ RE +WIFST +G  +L  S + F RL ++           L     + + 
Sbjct: 297 KYAAFIVPQGREVEWIFSTPAGRKKLQDSAN-FQRLAVVT----------LHRDQVYSTL 345

Query: 117 DQ--KSLEDSVKPLVIALSRKFCFDKNGIYN-VPLLSYEDNVVSSVVLEKCVGDFAGEML 173
           D+  + L DS+K L  A          G+ + +P LS   +V     L       +G+  
Sbjct: 346 DEVKQELADSIKNLSPA----------GLTDQIPYLSLGSDVGKRETLICGFSKISGDFR 395

Query: 174 VEDVEIESEGGCRKREFRRRLRFKRMPNLVQTE--VKLVPEAAISLDSVKIGGKVRFRPH 231
           +E+VE   +         RRL F     +VQ+E  VK V             G +  + H
Sbjct: 396 IEEVEANGKT-------LRRLIFLSNQFVVQSEALVKTVKIKGKKDRKKIDFGYLACQHH 448

Query: 232 IGVLVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQL-DFEVVG 290
           + + V V L   V           +  +       L VG+GGG L SFL   L    +  
Sbjct: 449 LYMSVGVQLATTV-----------QHPKRDVEKDVLVVGLGGGGLCSFLHAALPQARITA 497

Query: 291 VEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFL 350
           VE+D ++L VA QYF L+  +   V + D ++F+E+   +                    
Sbjct: 498 VEIDPIMLEVAEQYFELKQDKRFHVVIDDGLDFVERCRNE-------------------- 537

Query: 351 DNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPN 410
                 D  FD ++ D+DS D   G S PP  F+   +L   + I+   G+F++N++  +
Sbjct: 538 ------DIHFDAVLFDVDSKDLSLGMSCPPQSFLATKILQHIKEIIGPKGLFMLNLVCRD 591

Query: 411 RSFYDMLIQEFRDVF 425
            S     +     VF
Sbjct: 592 ESLRTEALNNLHKVF 606

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q8D3Q3|SPEE_VIBVU Spermidine synthase OS=Vibrio vulnificus (strain CMCP6) GN=speE PE=3 SV=1

 Score = 49.3 bits (116), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 82/194 (42%), Gaps = 45/194 (23%)

Query: 262 FRPKA---LCVGVGGGALVSFL-----RTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFL 313
           F PK    L +G+GGG++ S L      + +D     VE+D VV ++A +YF  +     
Sbjct: 86  FNPKPERILIIGLGGGSVPSALAELYPESHMDI----VEIDPVVSQIAERYFYFQPSHNT 141

Query: 314 QVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDAR 373
           +V  GDA  ++++                 LK             K+D I++     DA 
Sbjct: 142 RVHTGDARVYIKR---------------AGLK-----------GQKYDFILL-----DAF 170

Query: 374 NGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEFRDVFQELYEIDV 433
           NG   P    + ++ L+  + +LS  G+ V N    ++  YD     +R VF E Y   +
Sbjct: 171 NGEYIPE-HLMTREFLMETKQLLSSSGVLVANTFSTSK-LYDHESATYRSVFGEFYNFKI 228

Query: 434 GNEENFVLIATGLS 447
             E    +I + L+
Sbjct: 229 PQESGNRVILSMLT 242

Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM), which serves as an aminopropyl donor.

Vibrio vulnificus (taxid: 672)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q7MF74|SPEE_VIBVY Spermidine synthase OS=Vibrio vulnificus (strain YJ016) GN=speE PE=3 SV=1

 Score = 48.9 bits (115), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 77/183 (42%), Gaps = 45/183 (24%)

Query: 262 FRPKA---LCVGVGGGALVSFL-----RTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFL 313
           F PK    L +G+GGG++ S L      + +D     VE+D VV ++A +YF  +     
Sbjct: 87  FNPKPERILIIGLGGGSVPSALAELYPESHMDI----VEIDPVVSQIAERYFYFQPSHNT 142

Query: 314 QVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDAR 373
           +V  GDA  ++++                 LK             K+D I++     DA 
Sbjct: 143 RVHTGDARVYIKR---------------AGLK-----------GQKYDFILL-----DAF 171

Query: 374 NGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEFRDVFQELYEIDV 433
           NG   P    + ++ L+  + +LS  G+ V N    ++  YD     +R VF E Y   +
Sbjct: 172 NGEYIPE-HLMTREFLMETKQLLSSSGVLVANTFSTSK-LYDHESATYRSVFGEFYNFKI 229

Query: 434 GNE 436
             E
Sbjct: 230 PQE 232

Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM), which serves as an aminopropyl donor.

Vibrio vulnificus (strain YJ016) (taxid: 196600)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	478
147805065	583	hypothetical protein VITISV_004338 [Viti	0.958	0.785	0.591	1e-143
224113507	436	predicted protein [Populus trichocarpa]	0.910	0.997	0.601	1e-141
225449726	439	PREDICTED: methyltransferase-like protei	0.910	0.990	0.582	1e-136
296090399	441	unnamed protein product [Vitis vinifera]	0.914	0.990	0.580	1e-135
255580112	474	conserved hypothetical protein [Ricinus	0.966	0.974	0.552	1e-132
449459062	456	PREDICTED: methyltransferase-like protei	0.945	0.991	0.537	1e-131
449519016	456	PREDICTED: methyltransferase-like protei	0.945	0.991	0.535	1e-130
356495232	445	PREDICTED: methyltransferase-like protei	0.884	0.950	0.560	1e-125
356537431	449	PREDICTED: methyltransferase-like protei	0.884	0.942	0.560	1e-124
297810549	435	hypothetical protein ARALYDRAFT_487242 [	0.895	0.983	0.546	1e-120

>gi|147805065|emb|CAN69181.1| hypothetical protein VITISV_004338 [Vitis vinifera]

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 285/482 (59%), Positives = 341/482 (70%), Gaps = 24/482 (4%)

Query: 1   MALDMGMFETINPSRFITFTIPSPPLSHHNHHNDNHLLRVAVLDSPVQLSDSLAQPQVAL 60
           MALD   FE + PSRFITFT P+P           HLLRVAVLDSP   +DS   P+VA 
Sbjct: 122 MALDRATFEALVPSRFITFTFPNP--------ISGHLLRVAVLDSPTPATDS---PRVAA 170

Query: 61  MFVPKHREHDWIFSTESGHLQLLLSCHQFSRLILIGDEPTTDDSPDLPITTKHDSFDQKS 120
           M VP HREHDWIFST  GHLQLLLS    SRLIL GD P  D    + I  +  + D +S
Sbjct: 171 MLVPHHREHDWIFSTLDGHLQLLLSSPSISRLILAGDLPAADHCSPV-IYNRSVNADTES 229

Query: 121 ----LEDSVKPLVIALSRKFCFDKNGIYNVPLLSYEDNVVSSVVLEKCVGDFAGEMLVED 176
               L+ ++ PL++ALS K  F +NG   +P LSY+DNV+ SV++EKCVG   GEMLVED
Sbjct: 230 YLVKLQGNLMPLLLALSPK-SFAENGSLEIPFLSYDDNVIGSVIVEKCVGSCVGEMLVED 288

Query: 177 VEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGVLV 236
           VEIES     KREFRRRLRFKRMPNL+QTEV +VP  A+    +   G+V FR  +GVLV
Sbjct: 289 VEIESTES--KREFRRRLRFKRMPNLIQTEVSIVP--AVGSGGI---GEVEFRLDLGVLV 341

Query: 237 HVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEV 296
           H YL PM AS  LI SYI ERIR GF PKALCVGVGGGAL+SFL+TQL FEV GVE DE+
Sbjct: 342 HPYLAPMAASLCLICSYIEERIRTGFTPKALCVGVGGGALLSFLQTQLGFEVFGVEADEI 401

Query: 297 VLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRV 356
           VL VA +YFGLE GE ++V VGD IE +EK+  +++ +N  SFG   +++  F+++ ++ 
Sbjct: 402 VLSVAERYFGLEVGETIRVFVGDGIEVIEKIGCRVMERNLGSFGVHEVENPCFMNDINQC 461

Query: 357 DNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDM 416
             KFDVIMVDLDS D  NG SAPP++FV+K VLL+AR  L   GIFV+NVIPPNRSF++M
Sbjct: 462 GTKFDVIMVDLDSSDVCNGVSAPPLDFVQKSVLLSARSALCKLGIFVINVIPPNRSFHEM 521

Query: 417 LIQEFRDVFQELYEIDVGNEENFVLIATGLSIVSSGSDCENAFGKKLRLLISGEYMDSIR 476
           LI EFR+VF ELYEIDVGN EN+VLIAT   I S+ S  ENAF  KL+  ISG YMDSIR
Sbjct: 522 LIHEFREVFHELYEIDVGNGENYVLIATVSPIDSTLSGSENAFLVKLKRSISGAYMDSIR 581

Query: 477 KI 478
           KI
Sbjct: 582 KI 583

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113507|ref|XP_002316515.1| predicted protein [Populus trichocarpa] gi|222865555|gb|EEF02686.1| predicted protein [Populus trichocarpa]

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 288/479 (60%), Positives = 344/479 (71%), Gaps = 44/479 (9%)

Query: 1   MALDMGMFETINPSRFITFTIPSPPLSHHNHHNDNHLLRVAVLDSPVQLSDSLAQPQVAL 60
           MALD+  FETI PSRF++FTIP+P L          LLRVAVLDSP+Q ++S   PQVA 
Sbjct: 1   MALDIKTFETIIPSRFLSFTIPNPVLP-------TRLLRVAVLDSPIQPTES---PQVAA 50

Query: 61  MFVPKHREHDWIFSTESGHLQLLLSCHQFSRLILIGDEPTT-DDSPDLPITTKHDSFDQK 119
           +FVP+ RE DWIFSTESGHLQLLLS    SRLILIG+      DS  L    + D+   K
Sbjct: 51  LFVPQTREPDWIFSTESGHLQLLLSSPGISRLILIGNNRINGPDSSPLTYHKREDAQYVK 110

Query: 120 SLEDSVKPLVIALSRKFCFDKNGIYNVPLLSYEDNVVSSVVLEKCVGDFAGEMLVEDVEI 179
           SLE+S+KPL  ALS K    K+GI++VP+L YEDN++ SVVLE+  G F  EMLVED+EI
Sbjct: 111 SLENSLKPLFFALSPKVSV-KDGIFDVPILDYEDNLICSVVLERRAGIFVSEMLVEDIEI 169

Query: 180 ESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGVLVHVY 239
           ES+   R+    RRLRFKRMPNLVQTE+++VP+    LD VKIGG+V+FRP   VLVH Y
Sbjct: 170 ESDSELREFR--RRLRFKRMPNLVQTEIRIVPQKVFELDRVKIGGEVKFRPDTKVLVHSY 227

Query: 240 LVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLR 299
           L+PMVAS +LIGS I +R R G +PKALC+GVGGGAL+SFLRTQL FEV GVEMDE VL 
Sbjct: 228 LIPMVASLSLIGSCIEDRFRKGLKPKALCLGVGGGALLSFLRTQLGFEVFGVEMDEEVLS 287

Query: 300 VARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNK 359
           VARQYFGLE+   +QV VGDAIE++EKLA +                           ++
Sbjct: 288 VARQYFGLEE---IQVCVGDAIEYVEKLASK---------------------------DR 317

Query: 360 FDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQ 419
           FDVIMVDLDS DARNG  APP+EFV+K +LLAAR +LSDFGIFVMNVIPP R FYD LI 
Sbjct: 318 FDVIMVDLDSCDARNGVIAPPLEFVKKHILLAARSVLSDFGIFVMNVIPPTRLFYDTLIH 377

Query: 420 EFRDVFQELYEIDVGNEENFVLIATGLSIVSSGSDCENAFGKKLRLLISGEYMDSIRKI 478
           EF+++F ELYEIDVGN ENFVLIA    + S  S+CEN+F +KLR+ I G Y+DSIRKI
Sbjct: 378 EFQEIFHELYEIDVGNGENFVLIAKVSPVSSPLSECENSFLQKLRIAILGRYLDSIRKI 436

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449726|ref|XP_002270054.1| PREDICTED: methyltransferase-like protein 13-like [Vitis vinifera]

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 281/482 (58%), Positives = 327/482 (67%), Gaps = 47/482 (9%)

Query: 1   MALDMGMFETINPSRFITFTIPSPPLSHHNHHNDNHLLRVAVLDSPVQLSDSLAQPQVAL 60
           MALD   FE + PSRFITFT P+P            LLRVAVLDSP   +DS   P+VA 
Sbjct: 1   MALDRATFEALVPSRFITFTFPNP--------ISGQLLRVAVLDSPTPATDS---PRVAA 49

Query: 61  MFVPKHREHDWIFSTESGHLQLLLSCHQFSRLILIGDEPTTDDSPDLPITTKHDSFDQKS 120
           M VP HREHDWIFST  GHLQLLLS    SRLIL GD P  D    + I  +  + D +S
Sbjct: 50  MLVPHHREHDWIFSTLDGHLQLLLSSPSISRLILAGDLPAADHCSPV-IYNRSVNADTES 108

Query: 121 ----LEDSVKPLVIALSRKFCFDKNGIYNVPLLSYEDNVVSSVVLEKCVGDFAGEMLVED 176
               L+ ++ PL++ALS K  F +NG   +P LSY+DNV+ SV++EKCVG   GEMLVED
Sbjct: 109 YLVKLQGNLMPLLLALSPK-SFAENGSLEIPFLSYDDNVIGSVIVEKCVGSCVGEMLVED 167

Query: 177 VEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGVLV 236
           VEIES     KREFRRRLRFKRMPNL+QTEV +VP  A+    +   G+V FR  +GVLV
Sbjct: 168 VEIESTES--KREFRRRLRFKRMPNLIQTEVSIVP--AVGSGGI---GEVEFRLDLGVLV 220

Query: 237 HVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEV 296
           H YL PM AS  LI SYI ERIR GF PKALCVGVGGGAL+SFL+TQL FEV GVE DE+
Sbjct: 221 HPYLAPMAASLCLICSYIEERIRTGFTPKALCVGVGGGALLSFLQTQLGFEVFGVEADEI 280

Query: 297 VLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRV 356
           VL VA +YFGLE GE ++V VGD IE +EK+              C + DG         
Sbjct: 281 VLSVAERYFGLEVGETIRVFVGDGIEVIEKIG-------------CRVMDGT-------- 319

Query: 357 DNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDM 416
             KFDVIMVDLDS D  NG SAPP++FV++ VLL+AR  L   GIFV+NVIPPNRSF++M
Sbjct: 320 --KFDVIMVDLDSSDVCNGVSAPPLDFVQRSVLLSARSALCKLGIFVINVIPPNRSFHEM 377

Query: 417 LIQEFRDVFQELYEIDVGNEENFVLIATGLSIVSSGSDCENAFGKKLRLLISGEYMDSIR 476
           LI EFR+VF ELYEIDVGN EN+VLIAT   I S+ S  ENAF  KL+  ISG YMDSIR
Sbjct: 378 LIHEFREVFHELYEIDVGNGENYVLIATVSPIDSTLSGSENAFLVKLKRSISGAYMDSIR 437

Query: 477 KI 478
           KI
Sbjct: 438 KI 439

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090399|emb|CBI40218.3| unnamed protein product [Vitis vinifera]

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 280/482 (58%), Positives = 329/482 (68%), Gaps = 45/482 (9%)

Query: 1   MALDMGMFETINPSRFITFTIPSPPLSHHNHHNDNHLLRVAVLDSPVQLSDSLAQPQVAL 60
           MALD   FE + PSRFITFT P+P            LLRVAVLDSP   +DS   P+VA 
Sbjct: 1   MALDRATFEALVPSRFITFTFPNP--------ISGQLLRVAVLDSPTPATDS---PRVAA 49

Query: 61  MFVPKHREHDWIFSTESGHLQLLLSCHQFSRLILIGDEPTTDDSPDLPITTKHDSFDQKS 120
           M VP HREHDWIFST  GHLQLLLS    SRLIL GD P  D    + I  +  + D +S
Sbjct: 50  MLVPHHREHDWIFSTLDGHLQLLLSSPSISRLILAGDLPAADHCSPV-IYNRSVNADTES 108

Query: 121 ----LEDSVKPLVIALSRKFCFDKNGIYNVPLLSYEDNVVSSVVLEKCVGDFAGEMLVED 176
               L+ ++ PL++ALS K  F +NG   +P LSY+DNV+ SV++EKCVG   GEMLVED
Sbjct: 109 YLVKLQGNLMPLLLALSPK-SFAENGSLEIPFLSYDDNVIGSVIVEKCVGSCVGEMLVED 167

Query: 177 VEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGVLV 236
           VEIES     KREFRRRLRFKRMPNL+QTEV +VP  A+    +   G+V FR  +GVLV
Sbjct: 168 VEIESTES--KREFRRRLRFKRMPNLIQTEVSIVP--AVGSGGI---GEVEFRLDLGVLV 220

Query: 237 HVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEV 296
           H YL PM AS  LI SYI ERIR GF PKALCVGVGGGAL+SFL+TQL FEV GVE DE+
Sbjct: 221 HPYLAPMAASLCLICSYIEERIRTGFTPKALCVGVGGGALLSFLQTQLGFEVFGVEADEI 280

Query: 297 VLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRV 356
           VL VA +YFGLE GE ++V VGD IE           +NP     C      F+++ ++ 
Sbjct: 281 VLSVAERYFGLEVGETIRVFVGDGIEV----------ENP-----C------FMNDINQC 319

Query: 357 DNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDM 416
             KFDVIMVDLDS D  NG SAPP++FV++ VLL+AR  L   GIFV+NVIPPNRSF++M
Sbjct: 320 GTKFDVIMVDLDSSDVCNGVSAPPLDFVQRSVLLSARSALCKLGIFVINVIPPNRSFHEM 379

Query: 417 LIQEFRDVFQELYEIDVGNEENFVLIATGLSIVSSGSDCENAFGKKLRLLISGEYMDSIR 476
           LI EFR+VF ELYEIDVGN EN+VLIAT   I S+ S  ENAF  KL+  ISG YMDSIR
Sbjct: 380 LIHEFREVFHELYEIDVGNGENYVLIATVSPIDSTLSGSENAFLVKLKRSISGAYMDSIR 439

Query: 477 KI 478
           KI
Sbjct: 440 KI 441

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580112|ref|XP_002530888.1| conserved hypothetical protein [Ricinus communis] gi|223529541|gb|EEF31494.1| conserved hypothetical protein [Ricinus communis]

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 268/485 (55%), Positives = 346/485 (71%), Gaps = 23/485 (4%)

Query: 1   MALDMGMFETINPSRFITFTIPSPPLSHHNHHNDNHLLRVAVLDSPVQLSDSLAQPQVAL 60
           MALDM  FETI PSRF++FTIP P L        N LLRVA+LDSP+Q ++S   P+VA 
Sbjct: 1   MALDMTSFETIIPSRFLSFTIPHPTLP-------NLLLRVAILDSPIQSTES---PRVAA 50

Query: 61  MFVPKHREHDWIFSTESGHLQLLLSCHQFSRLILIGDEPTTDDSPDLPITTKHDSFDQ-- 118
           +FVP++RE DW+FSTESGHLQLLLS    SRLILIG  P  D    L I+ K +   Q  
Sbjct: 51  LFVPQNRESDWVFSTESGHLQLLLSSPGISRLILIGKNPVNDAPDSLLISYKKNGDSQFV 110

Query: 119 KSLEDSVKPLVIALSRKFCFDKNGIYNVPLLSYEDNVVSSVVLEKCVGDFAGEMLVEDVE 178
            SL  S++PL +  S K C  K+ I++VP+L YEDN++ SVVLE+C G F GEML++DVE
Sbjct: 111 NSLVHSLRPLFVGFSPKTCV-KDRIFDVPILDYEDNLICSVVLERCSGVFVGEMLIQDVE 169

Query: 179 IESEGG-----CRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIG 233
           IE+        CRKREFRRRLRFKRMPNL+QTE+++VP      DSV IGG+V+FRP +G
Sbjct: 170 IETNNELDDDVCRKREFRRRLRFKRMPNLIQTEIRIVPVTGFISDSVTIGGEVKFRPDVG 229

Query: 234 VLVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLDFEVVGVEM 293
            LVH Y  PMVAS +L+G +I +RI+ G +PKALC+GVGGGAL+SFLRTQL FEV GVEM
Sbjct: 230 TLVHPYFTPMVASLSLVGCHINDRIQNGLKPKALCLGVGGGALLSFLRTQLGFEVFGVEM 289

Query: 294 DEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNS 353
           D+ V RVARQYFGLE+ E +QV +GDA+E+LE  A     +   S   C+  + +++++S
Sbjct: 290 DDEVFRVARQYFGLENSE-IQVFIGDAMEYLETFA----SRGSSSNLVCNKIEEDYVNHS 344

Query: 354 DRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSF 413
              D KFDVIMVDLDS D   G SAPP+E +++ VL A   I+ D+GI +MNVIPP+R F
Sbjct: 345 ISFDPKFDVIMVDLDSNDPTTGISAPPLELIQRHVLSALHSIICDYGILIMNVIPPSRPF 404

Query: 414 YDMLIQEFRDVFQELYEIDVGNEENFVLIATGLSIVSSGSDCENAFGKKLRLLISGEYMD 473
           +D L+ + ++ F EL+EIDVGN EN VL+A    ++SS S C+N F KKL+ +I G+Y+D
Sbjct: 405 FDTLVSKLQEFFHELFEIDVGNGENTVLVAKKSPVLSSASCCQNTFLKKLKQMILGKYLD 464

Query: 474 SIRKI 478
           SI+KI
Sbjct: 465 SIKKI 469

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459062|ref|XP_004147265.1| PREDICTED: methyltransferase-like protein 13-like [Cucumis sativus]

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 259/482 (53%), Positives = 334/482 (69%), Gaps = 30/482 (6%)

Query: 1   MALDMGMFETINPSRFITFTIPSPPLSHHNHHNDNHLLRVAVLDSPVQLSDSLAQPQVAL 60
           MALD+ MFE +NPSRFITF+ P+P        N    LR+AVLDSP++L+DS   P VA 
Sbjct: 1   MALDVHMFEALNPSRFITFSFPNP-------CNSRSSLRIAVLDSPIRLTDS---PSVAA 50

Query: 61  MFVPKHREHDWIFSTESGHLQLLLSCHQFSRLILIGDEPTTDDSPDLPITTKHDSFDQKS 120
           MFVP   E DWIFSTESGH  LL      SRLIL+GD+        LPI  + DS    S
Sbjct: 51  MFVPPGLETDWIFSTESGHYHLLFDSPGISRLILVGDQEPVTGHDSLPIYNRQDSASTWS 110

Query: 121 -LEDSVKPLVIALSRKFCFDKNGIYNVPLLSYEDNVVSSVVLEKCVGDFAGEMLVEDVEI 179
            L  S++PL++AL  K CF KNGI  VP+LS+ DNV+  VVLE+C+G   GE LVE+VEI
Sbjct: 111 RLVVSLQPLLLALFPKSCF-KNGIPEVPILSFVDNVIRRVVLERCIGSSVGEFLVENVEI 169

Query: 180 ESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGVLVHVY 239
           E E     REFRRRLRFKRMPNL+QTE++L+PE  ++LD V+I   ++F+P   VLVH Y
Sbjct: 170 ERES-FETREFRRRLRFKRMPNLIQTEIRLIPEDNLNLDGVEIQN-IQFKPDTRVLVHPY 227

Query: 240 LVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLR 299
           L PMVAS +LI S I ++I+ G RPKALCVGVGGGAL+SFL T LDFEV+GVEMD  VLR
Sbjct: 228 LPPMVASLSLIASSIDKQIQTGHRPKALCVGVGGGALLSFLATHLDFEVMGVEMDVEVLR 287

Query: 300 VARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNK 359
           VA+QYFGL + EFL +S+GDA EFL+  ++ +  +  +S G               + + 
Sbjct: 288 VAQQYFGLVENEFLHISIGDATEFLQYASKSVKKQKSESLGV-------------HMSSL 334

Query: 360 FDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQ 419
           +DVIM DLDS DARNG S+PP+EFVR+DVLL+AR +LS+ GI ++NVIP ++ F+D L+ 
Sbjct: 335 YDVIMFDLDSSDARNGMSSPPLEFVRRDVLLSARSVLSEHGILIVNVIPLDKFFFDTLVH 394

Query: 420 EFRDVFQELYEIDVGNEENFVLIATGLSIVSSGSDCE---NAFGKKLRLLISGEYMDSIR 476
           EFR +F +L++IDV N ENFV+IA+  SI S  +  +   N+F  +LRL + G YMDSI+
Sbjct: 395 EFRSIFDDLFQIDVDNGENFVVIASVCSIKSFPNVTKEEINSFSSRLRLFLPGAYMDSIK 454

Query: 477 KI 478
           +I
Sbjct: 455 RI 456

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449519016|ref|XP_004166531.1| PREDICTED: methyltransferase-like protein 13-like [Cucumis sativus]

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 258/482 (53%), Positives = 334/482 (69%), Gaps = 30/482 (6%)

Query: 1   MALDMGMFETINPSRFITFTIPSPPLSHHNHHNDNHLLRVAVLDSPVQLSDSLAQPQVAL 60
           MALD+ MFE +NPSRFITF+  +P  SH +       LR+AVLDSP++L+DS   P VA 
Sbjct: 1   MALDVHMFEALNPSRFITFSFANPCNSHSS-------LRIAVLDSPIRLTDS---PSVAA 50

Query: 61  MFVPKHREHDWIFSTESGHLQLLLSCHQFSRLILIGDEPTTDDSPDLPITTKHDSFDQKS 120
           MFVP   E DWIFSTESGH  LL      SRLIL+GD+        LPI  + DS    S
Sbjct: 51  MFVPPGLETDWIFSTESGHYHLLFDSPGISRLILVGDQEPVTGHDSLPIYNRQDSASTWS 110

Query: 121 -LEDSVKPLVIALSRKFCFDKNGIYNVPLLSYEDNVVSSVVLEKCVGDFAGEMLVEDVEI 179
            L  S++PL++AL  K  F KNGI  VP+LS+ DNV+  VVLE+C+G   GE LVE+VEI
Sbjct: 111 RLVVSLQPLLLALFPKSRF-KNGIPEVPILSFVDNVIRRVVLERCIGSSVGEFLVENVEI 169

Query: 180 ESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGVLVHVY 239
           E E     REFRRRLRFKRMPNL+QTE++L+PE  ++LD V+I   ++F+P   VLVH Y
Sbjct: 170 ERES-FETREFRRRLRFKRMPNLIQTEIRLIPEDNLNLDGVEIQN-IQFKPDTRVLVHPY 227

Query: 240 LVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLR 299
           L PMVAS +LI S I ++I+ G RPKALCVGVGGGAL+SFL T LDFEV+GVEMD  VLR
Sbjct: 228 LPPMVASLSLIASSIDKQIQTGHRPKALCVGVGGGALLSFLATHLDFEVMGVEMDVEVLR 287

Query: 300 VARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNK 359
           VA+QYFGL + EFL +S+GDA EFL+  ++ +  +  +S G               + + 
Sbjct: 288 VAQQYFGLVENEFLHISIGDATEFLQYASKSVKKQKSESLGV-------------HMSSL 334

Query: 360 FDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQ 419
           +DVIM DLDS DARNG S+PP+EFVR+DVLL+AR +LS+ GI ++NVIP ++ F+D L+ 
Sbjct: 335 YDVIMFDLDSSDARNGMSSPPLEFVRRDVLLSARSVLSEHGILIVNVIPLDKFFFDTLVH 394

Query: 420 EFRDVFQELYEIDVGNEENFVLIATGLSIVSSGSDCE---NAFGKKLRLLISGEYMDSIR 476
           EFR +F +L++IDV N ENFV+IA+  SI S  +  +   N+F  +LRL + G YMDSI+
Sbjct: 395 EFRSIFDDLFQIDVDNGENFVVIASVCSIKSFPNVTKEEINSFSSRLRLFLPGAYMDSIK 454

Query: 477 KI 478
           +I
Sbjct: 455 RI 456

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495232|ref|XP_003516483.1| PREDICTED: methyltransferase-like protein 13-like [Glycine max]

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 259/462 (56%), Positives = 307/462 (66%), Gaps = 39/462 (8%)

Query: 1   MALDMGMFETINPSRFITFTIPSPPLSHHNHHNDNHLLRVAVLDSPVQLSDSLAQPQVAL 60
           MALD   FETI PSRFI FT+P P  S       +  LRVAVLDSP+Q +DS   P+V  
Sbjct: 1   MALDASTFETITPSRFIAFTVPHPTCS-------DSTLRVAVLDSPLQPTDS---PRVGA 50

Query: 61  MFVPKHREHDWIFSTESGHLQLLLSCHQFSRLILIGDEPTTDDSPDLPITTKHDSFD--- 117
           M VP+ RE DWIFSTESGHLQLL S    SRLILIG          L     H S +   
Sbjct: 51  MLVPEGRETDWIFSTESGHLQLLFSSPGISRLILIGTLFKEGTLTLLQSRAYHRSLECSL 110

Query: 118 -QKSLEDSVKPLVIALSRKFCFDKNGIYNVPLLSYEDNVVSSVVLEKCVGDFAGEMLVED 176
             +  E   KPL++ALS K  F K GI  +PLLSYED++VSSVV+ +CVG   GEMLVED
Sbjct: 111 QHQGFEVWSKPLLLALSPKSLF-KRGIPEIPLLSYEDSLVSSVVVHECVGCHVGEMLVED 169

Query: 177 VEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGVLV 236
           VEIE+E     REFRRRLRFKRMPNL+QTE+ ++PE     D V IGG V F P + VLV
Sbjct: 170 VEIENESD-HGREFRRRLRFKRMPNLIQTEICIIPER--DCDGVCIGGDVGFVPDLKVLV 226

Query: 237 HVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEV 296
           H YL PMVA   L   Y+  RIR GFRPKALC+GVGGGAL++FLR QL FEV+GV+ D  
Sbjct: 227 HPYLGPMVAGLVLNSEYVEGRIRMGFRPKALCLGVGGGALMTFLRNQLGFEVMGVDSDRE 286

Query: 297 VLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRV 356
           VLRVAR+YFGLE+ EF++V VGDA E + KL   +                      D V
Sbjct: 287 VLRVARKYFGLEECEFVRVVVGDAFESMNKLVCLV---------------------EDEV 325

Query: 357 DNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDM 416
           + KFDV+MVDLDS D RNG  +PP+EF+RKDVLLAA+L+L +FGI  +NVIPP+RSFYD 
Sbjct: 326 NCKFDVVMVDLDSSDVRNGVRSPPLEFIRKDVLLAAKLVLCEFGILAINVIPPSRSFYDN 385

Query: 417 LIQEFRDVFQELYEIDVGNEENFVLIATGLSIVSSGSDCENA 458
           L+  F++VF ELY+IDVGN ENFVLIAT   +V S  DC  A
Sbjct: 386 LVSHFQEVFHELYKIDVGNGENFVLIATASPLVFSVEDCAYA 427

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537431|ref|XP_003537231.1| PREDICTED: methyltransferase-like protein 13-like [Glycine max]

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 259/462 (56%), Positives = 309/462 (66%), Gaps = 39/462 (8%)

Query: 1   MALDMGMFETINPSRFITFTIPSPPLSHHNHHNDNHLLRVAVLDSPVQLSDSLAQPQVAL 60
           MALD   FETI PSRFI FT+P P  S       +  LRVAVLDSP+Q +DS   P+V+ 
Sbjct: 1   MALDASTFETIPPSRFIAFTVPHPTCS-------DSTLRVAVLDSPLQPTDS---PRVSA 50

Query: 61  MFVPKHREHDWIFSTESGHLQLLLSCHQFSRLILIGDEPTTDDSPDLPITTKHDSFD--- 117
           M VP+ RE DWIFSTE GHLQLL S    SRLILIG          L     H S +   
Sbjct: 51  MLVPEGRETDWIFSTELGHLQLLFSSPGISRLILIGTLFKEGTLTLLQSRAYHRSLECSL 110

Query: 118 -QKSLEDSVKPLVIALSRKFCFDKNGIYNVPLLSYEDNVVSSVVLEKCVGDFAGEMLVED 176
             +  E   KPL++ALS K  F K GI  +PLLSYED++VSSVV+ +CVG   GEMLVED
Sbjct: 111 QHQGFEVWSKPLLLALSPKSLF-KRGIPEIPLLSYEDSLVSSVVVHECVGCHVGEMLVED 169

Query: 177 VEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGVLV 236
           VEIE+E     REFRRRLRFKRMPNL+QTE+ ++PE     D V IGG V F P + VLV
Sbjct: 170 VEIENESD-HGREFRRRLRFKRMPNLIQTEICIIPER--DCDGVCIGGDVGFVPDLKVLV 226

Query: 237 HVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEV 296
           H YL PMVA   L   Y+  RIR GFRPKALC+GVGGGAL++FLR QL FEV+GV+ D  
Sbjct: 227 HPYLGPMVAGLVLNSEYVEGRIRMGFRPKALCLGVGGGALMTFLRNQLGFEVMGVDSDRE 286

Query: 297 VLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRV 356
           VLRVAR+YFGLE+ EF++V VGDA E + KL              C ++D         V
Sbjct: 287 VLRVARKYFGLEECEFVRVVVGDAFESMNKLV-------------CVVED--------EV 325

Query: 357 DNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDM 416
           + KFDV+MVDLDS D RNG  +PP+EF+RKDVLLAA+L+L +FGI  +NVIPP+RSFYD 
Sbjct: 326 NCKFDVVMVDLDSSDVRNGVRSPPLEFIRKDVLLAAKLVLCEFGILAINVIPPSRSFYDN 385

Query: 417 LIQEFRDVFQELYEIDVGNEENFVLIATGLSIVSSGSDCENA 458
           L+  F++VF ELY+IDVGN ENFVLIAT   +V S  DC  A
Sbjct: 386 LVSHFQEVFHELYKIDVGNGENFVLIATASPLVFSVEDCAYA 427

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810549|ref|XP_002873158.1| hypothetical protein ARALYDRAFT_487242 [Arabidopsis lyrata subsp. lyrata] gi|297318995|gb|EFH49417.1| hypothetical protein ARALYDRAFT_487242 [Arabidopsis lyrata subsp. lyrata]

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 265/485 (54%), Positives = 327/485 (67%), Gaps = 57/485 (11%)

Query: 1   MALDMGMFETINPSRFITFTIPSP--PLSHHNHHNDNHLLRVAVLDSPVQLSDSLAQPQV 58
           MALD+ +FETI+PSRFI+FTIP+P  P+         HLLRVAVLD+PV  ++S + P+V
Sbjct: 1   MALDVRIFETISPSRFISFTIPNPISPI---------HLLRVAVLDTPVHCTES-SPPRV 50

Query: 59  ALMFVPKHREHDWIFSTESGHLQLLLSCHQFSRLILIGDEPTTDDSPDLPIT----TKHD 114
           A + VPKHRE DWIFSTESGHLQLLL+    SRLILIGD+   D   DLP      T  D
Sbjct: 51  AAILVPKHRESDWIFSTESGHLQLLLNLPDISRLILIGDD--HDGGSDLPAVYHRPTGED 108

Query: 115 SFDQKSLEDSVKPLVIALSRKFCFDKNGIYNVPLLSYEDNVVSSVVLEKCVGDFAGEMLV 174
             + +SLE  +KPLV+ALS K    +  I +VP L Y+DNVVSSVVLEK VG F GEML+
Sbjct: 109 D-ESESLEMRLKPLVVALSPKTLI-REEIDDVPFLIYDDNVVSSVVLEKSVGPFVGEMLI 166

Query: 175 EDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGV 234
           EDVEIE E G R  EFRRRLRFKRMPNLVQ+++K++P ++ S  S+ + G   F+ H+  
Sbjct: 167 EDVEIEIEDGVR--EFRRRLRFKRMPNLVQSDIKIIP-SSCSNSSLPLTG-TEFKLHLTE 222

Query: 235 LVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLDFEVVGVEMD 294
           LVH YL PMVAS +LIGS I E      RPKALC+GVGGG L+SFLR QL FEV GVE+D
Sbjct: 223 LVHPYLAPMVASLSLIGSDIYE---LKSRPKALCIGVGGGGLLSFLRLQLGFEVTGVEID 279

Query: 295 EVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSD 354
             VLR+ARQYFGLE+    +V V D IEFL++L+              S  D        
Sbjct: 280 PEVLRIARQYFGLEES-LARVHVEDGIEFLKRLS-------------TSCDD-------- 317

Query: 355 RVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFY 414
             D KFDV+MVDLDS D  +G +APPVEFV KDVL AAR +L   G+F++NVIPPN++FY
Sbjct: 318 --DAKFDVLMVDLDSTDPIHGMTAPPVEFVAKDVLQAARKVLVPSGVFIINVIPPNKTFY 375

Query: 415 DMLIQEFRDVFQELYEIDVGNEENFVLIATGLSIVSSGSDCENAFGK-KLRLLISGEYMD 473
             L  +FR VF EL+EIDVGN ENFVLIAT      +  D ++ F +  L   +S  Y+D
Sbjct: 376 HELQDQFRHVFDELHEIDVGNGENFVLIAT-----VTPRDSKSGFNRANLTPAVSDNYLD 430

Query: 474 SIRKI 478
           +I+KI
Sbjct: 431 AIQKI 435

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	478
TAIR|locus:2184382	434	AT5G04610 [Arabidopsis thalian	0.650	0.716	0.493	4.5e-66
TAIR|locus:2045253	760	AT2G31740 [Arabidopsis thalian	0.460	0.289	0.248	4.6e-21
ZFIN|ZDB-GENE-060929-60	690	mettl13 "methyltransferase lik	0.510	0.353	0.266	1.9e-13
UNIPROTKB|A5PK19	699	METTL13 "Methyltransferase-lik	0.171	0.117	0.341	1e-11
UNIPROTKB|B4E2X3	698	METTL13 "cDNA FLJ56024" [Homo	0.171	0.117	0.341	4.6e-11
UNIPROTKB|Q8N6R0	699	METTL13 "Methyltransferase-lik	0.171	0.117	0.341	4.6e-11
RGD|1311526	700	Mettl13 "methyltransferase lik	0.171	0.117	0.353	1.8e-10
UNIPROTKB|F1PDJ6	699	METTL13 "Uncharacterized prote	0.173	0.118	0.325	2.7e-10
UNIPROTKB|D4A181	705	Mettl13 "Similar to RIKEN cDNA	0.171	0.116	0.353	5.1e-10
UNIPROTKB|F1NNM3	700	F1NNM3 "Uncharacterized protei	0.173	0.118	0.349	1.2e-09

TAIR|locus:2184382 AT5G04610 [Arabidopsis thaliana (taxid:3702)]

 Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
 Identities = 164/332 (49%), Positives = 212/332 (63%)

Query:     1 MALDMGMFETINPSRFITFTIXXXXXXXXXXXXXXXXXRVAVLDSPVQLSDSLAQPQVAL 60
             MALD+ +FE  +PSRFI+FTI                 RVAVLDSPV  ++S + P+VA 
Sbjct:     1 MALDVRIFEKTSPSRFISFTIPNPNSPIHLL-------RVAVLDSPVHSTES-SPPRVAA 52

Query:    61 MFVPKHREHDWIFSTESGHLQLLLSCHQFSRLILIGDEPTTDDSPDLP-ITTKHDSFDQK 119
             + VPKHRE DWIFSTESG LQLLL+  + SRLILIGD+  TD   DLP +  + +  D +
Sbjct:    53 ILVPKHRESDWIFSTESGQLQLLLNMPEISRLILIGDDHDTDS--DLPAVYHRPNGEDDE 110

Query:   120 S--LEDSVKPLVIALSRKFCFDKNGIYNVPLLSYEDNVVSSVVLEKCVGDFAGEMLVEDV 177
             S  LE  +KPLV+AL  K    +  I +VP L Y+DNVVSSV +EKCVG F GEML+EDV
Sbjct:   111 SEKLEIRLKPLVVALLPK-TLTREEIDDVPFLIYDDNVVSSVEIEKCVGPFVGEMLIEDV 169

Query:   178 EIESEGGCXXXXXXXXXXXXXMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGVLVH 237
             EIE + G              MPNLVQ+ +K++P +  S  S+ + G   F+  +  LVH
Sbjct:   170 EIEIDDGVREFRRRLRFKR--MPNLVQSAIKIIPRSC-SNPSLPLMG-TEFKLDLTELVH 225

Query:   238 VYLVPMVASCALIGSYIGERIRFGFRPKALCXXXXXXALVSFLRTQLDFEVVGVEMDEVV 297
              YL PMVAS +LIGS + + ++   +PKALC       L+SFLR QL FEV GVE+D  V
Sbjct:   226 PYLAPMVASLSLIGSDVYDHLKS--KPKALCIGVGGGGLLSFLRLQLGFEVTGVEIDPEV 283

Query:   298 LRVARQYFGLEDGEFLQVSVGDAIEFLEKLAR 329
             LR+ARQYFGLE+    +V V D IEFL++L++
Sbjct:   284 LRIARQYFGLEES-LARVHVEDGIEFLKRLSK 314

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2045253 AT2G31740 [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 4.6e-21, Sum P(3) = 4.6e-21
 Identities = 57/229 (24%), Positives = 113/229 (49%)

Query:   235 LVHVYLVPMVASCALIGSYIGERIRFGFRPKALCXXXXXXALVSFLRTQLDF-EVVGVEM 293
             L   Y   +++   L+ SY+ +    G   K +        L  FL   L F  +  VE+
Sbjct:   507 LASSYHTGIISGFTLVSSYLKKAESCGTMVKTVVIGLGAGLLPMFLHGCLPFFSIEAVEL 566

Query:   294 DEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSL-KDGNFLDN 352
             D V+L V + YFG    + L+V + D I+F+    R I      S  + ++  +G+   +
Sbjct:   567 DPVMLSVGKDYFGFTQNDRLKVHIADGIKFI----RDITNSEASSEESSNIGSNGDSTTH 622

Query:   353 SDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRS 412
             + +     D++++D+DS D+  G + P  +F+ +  LL+ +  L   G+F++N++  ++S
Sbjct:   623 NTQGGICPDILIIDVDSADSSGGLTCPASDFIEETFLLSVKQALPQHGLFIVNLVTRSQS 682

Query:   413 FYDMLIQEFRDVFQELYEIDVGNEENFVLIATGL---SIVSSGSDCENA 458
               DM++   + VF  L+ + +  E++  ++  GL   S++S     E+A
Sbjct:   683 VKDMVVSRMKKVFDHLFGLQLEEEDDVNVVLFGLCSESVISENDIPESA 731

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

ZFIN|ZDB-GENE-060929-60 mettl13 "methyltransferase like 13" [Danio rerio (taxid:7955)]

 Score = 139 (54.0 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
 Identities = 75/281 (26%), Positives = 118/281 (41%)

Query:    59 ALMFVPKHREHDWIFSTESGHLQLLLSCHQFSRLILIGDEPTTDDSPDLPITTKHDSFDQ 118
             A+  VP+ RE DW++ +  G  QL  S  +F RL+++      D   +          D 
Sbjct:   295 AIFIVPQGRESDWLYGSAEGRAQLASSA-KFRRLVIVAMH--RDQEYE----------DM 341

Query:   119 KSLEDSVKPLVIALSRKFCFDKNGIYNVPLLSYEDNVVSSVVLEKCVGDFAGEMLVEDVE 178
             ++++  + P+V+ L+       N    VP LS   ++    V+ + +    GE  VEDV 
Sbjct:   342 QAVQSELSPVVMELAPPG-MPAN--QQVPFLSVGGDLGWREVIGRGLSALTGEYSVEDVR 398

Query:   179 IESEGGCXXXXXXXXXXXXXMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHI------ 232
                E G                 LVQ+E +L   AA S  S K   K   +P        
Sbjct:   399 --GEDGYLYRRLIFMNNS----QLVQSESRLQSAAAASSASKKKNKKKAKQPASTGAKDR 452

Query:   233 ----GVLVHVYLVPMVASCALIGSYIGERIRFGFRP-KALCXXXXXXALVSFLRTQLDF- 286
                 G L   +   MVA  A++G    + I    +P   L        L  F+R  +   
Sbjct:   453 SVDRGFLCCTHHEVMVAGLAMLGM---DAINNKDQPVSVLLVGLGGGGLPQFVRDFVPCA 509

Query:   287 EVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKL 327
              V  VE+D VVL VA+ +FG +  + L+V++GD +E +  L
Sbjct:   510 RVEVVELDPVVLDVAQTWFGFQIDDRLKVTLGDGLEHITTL 550

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

UNIPROTKB|A5PK19 METTL13 "Methyltransferase-like protein 13" [Bos taurus (taxid:9913)]

 Score = 119 (46.9 bits), Expect = 1.0e-11, Sum P(3) = 1.0e-11
 Identities = 28/82 (34%), Positives = 44/82 (53%)

Query:   360 FDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQ 419
             +DVIM D+DS D   G S PP  FV +  L   + IL+  G+F++N++  +    D ++ 
Sbjct:   569 YDVIMFDVDSKDPTLGMSCPPPAFVAQLFLQKVKSILTPEGVFILNLVCRDLGLKDSVLA 628

Query:   420 EFRDVFQELYEIDVGNEENFVL 441
               + VF  LY   +  E N +L
Sbjct:   629 GLKAVFPLLYVRRIEGEVNEIL 650

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|B4E2X3 METTL13 "cDNA FLJ56024" [Homo sapiens (taxid:9606)]

 Score = 124 (48.7 bits), Expect = 4.6e-11, Sum P(3) = 4.6e-11
 Identities = 28/82 (34%), Positives = 44/82 (53%)

Query:   360 FDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQ 419
             +DVIM D+DS D   G S PP  FV +  L   + IL+  G+F++N++  +    D ++ 
Sbjct:   568 YDVIMFDVDSKDPTLGMSCPPPAFVEQSFLQKVKSILTPEGVFILNLVCRDLGLKDSVLA 627

Query:   420 EFRDVFQELYEIDVGNEENFVL 441
               + VF  LY   +  E N +L
Sbjct:   628 GLKAVFPLLYVRRIEGEVNEIL 649

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|Q8N6R0 METTL13 "Methyltransferase-like protein 13" [Homo sapiens (taxid:9606)]

 Score = 124 (48.7 bits), Expect = 4.6e-11, Sum P(3) = 4.6e-11
 Identities = 28/82 (34%), Positives = 44/82 (53%)

Query:   360 FDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQ 419
             +DVIM D+DS D   G S PP  FV +  L   + IL+  G+F++N++  +    D ++ 
Sbjct:   569 YDVIMFDVDSKDPTLGMSCPPPAFVEQSFLQKVKSILTPEGVFILNLVCRDLGLKDSVLA 628

Query:   420 EFRDVFQELYEIDVGNEENFVL 441
               + VF  LY   +  E N +L
Sbjct:   629 GLKAVFPLLYVRRIEGEVNEIL 650

GO:0008168 "methyltransferase activity" evidence=IEA

RGD|1311526 Mettl13 "methyltransferase like 13" [Rattus norvegicus (taxid:10116)]

 Score = 116 (45.9 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
 Identities = 29/82 (35%), Positives = 43/82 (52%)

Query:   360 FDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQ 419
             +DVIM D+DS D   G S PP  FV +  L   + ILS  GIF++N++  +    + ++ 
Sbjct:   570 YDVIMFDVDSKDPTLGMSCPPPAFVDQLFLQKVKSILSREGIFILNLVCRDLGLKESVLA 629

Query:   420 EFRDVFQELYEIDVGNEENFVL 441
               R  F  LY   +  E N +L
Sbjct:   630 GLRAAFPLLYVRRIEGEVNEIL 651

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|F1PDJ6 METTL13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 118 (46.6 bits), Expect = 2.7e-10, Sum P(3) = 2.7e-10
 Identities = 27/83 (32%), Positives = 45/83 (54%)

Query:   359 KFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLI 418
             +++VIM D+DS D   G S PP  FV +  L   + IL+  G+F++N++  +    D ++
Sbjct:   568 RYNVIMFDVDSKDPTLGMSCPPPAFVDQPFLQKVKSILTPEGVFILNLVCRDLGLKDSVL 627

Query:   419 QEFRDVFQELYEIDVGNEENFVL 441
                + VF  LY   +  E N +L
Sbjct:   628 TGLKAVFPLLYVRRIEGEVNEIL 650

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|D4A181 Mettl13 "Similar to RIKEN cDNA 5630401D24 (Predicted)" [Rattus norvegicus (taxid:10116)]

 Score = 116 (45.9 bits), Expect = 5.1e-10, Sum P(4) = 5.1e-10
 Identities = 29/82 (35%), Positives = 43/82 (52%)

Query:   360 FDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQ 419
             +DVIM D+DS D   G S PP  FV +  L   + ILS  GIF++N++  +    + ++ 
Sbjct:   575 YDVIMFDVDSKDPTLGMSCPPPAFVDQLFLQKVKSILSREGIFILNLVCRDLGLKESVLA 634

Query:   420 EFRDVFQELYEIDVGNEENFVL 441
               R  F  LY   +  E N +L
Sbjct:   635 GLRAAFPLLYVRRIEGEVNEIL 656

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|F1NNM3 F1NNM3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 128 (50.1 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
 Identities = 29/83 (34%), Positives = 44/83 (53%)

Query:   359 KFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLI 418
             ++D IM D+DS D   G S PP  FV K  L   + IL   G+FV+N++  +    + ++
Sbjct:   569 QYDAIMFDVDSKDLTVGMSCPPPAFVEKPFLEKVKTILKPEGVFVLNLVCRDARLKESVL 628

Query:   419 QEFRDVFQELYEIDVGNEENFVL 441
                R+VF  LY   +  E N +L
Sbjct:   629 AILREVFPLLYARRIDGEVNEIL 651

GO:0008168 "methyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	478
PRK04457	262	PRK04457, PRK04457, spermidine synthase; Provision	1e-08
COG0421	282	COG0421, SpeE, Spermidine synthase [Amino acid tra	8e-06
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	8e-05
PRK00811	283	PRK00811, PRK00811, spermidine synthase; Provision	2e-04

>gnl|CDD|179854 PRK04457, PRK04457, spermidine synthase; Provisional

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 48/189 (25%), Positives = 74/189 (39%), Gaps = 42/189 (22%)

Query: 260 FGFRPKA-LCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGL-EDGEFLQVS 316
           F  RP+  L +G+GGG+L  F+ T L D     VE++  V+ VAR +F L E+GE  +V 
Sbjct: 63  FNPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVI 122

Query: 317 VGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVD-LDSGDARNG 375
             D  E+        +  +  S                      DVI+VD  D       
Sbjct: 123 EADGAEY--------IAVHRHS---------------------TDVILVDGFDGEGI--- 150

Query: 376 TSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEFRDVF-QELYEIDVG 434
                     +      R  LS  GIFV+N+   ++  YD  ++     F   + E+   
Sbjct: 151 ----IDALCTQPFFDDCRNALSSDGIFVVNLWSRDKR-YDRYLERLESSFEGRVLELPAE 205

Query: 435 NEENFVLIA 443
           +  N  + A
Sbjct: 206 SHGNVAVFA 214

Length = 262

>gnl|CDD|223498 COG0421, SpeE, Spermidine synthase [Amino acid transport and metabolism]

 Score = 47.0 bits (112), Expect = 8e-06
 Identities = 31/148 (20%), Positives = 49/148 (33%), Gaps = 40/148 (27%)

Query: 263 RPKALCVGVGGGALVSFLRTQLDFE-VVGVEMDEVVLRVARQYFGL----EDGEFLQVSV 317
             + L +G G G  +  +   L  E +  VE+D  V+ +AR+Y        D   +++ +
Sbjct: 77  PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIII 136

Query: 318 GDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTS 377
            D +EFL                                  KFDVI+VD           
Sbjct: 137 DDGVEFLRDCE-----------------------------EKFDVIIVDSTDPVGPAEA- 166

Query: 378 APPVEFVRKDVLLAARLILSDFGIFVMN 405
                   ++     R  L + GIFV  
Sbjct: 167 -----LFTEEFYEGCRRALKEDGIFVAQ 189

Length = 282

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 41.3 bits (97), Expect = 8e-05
 Identities = 31/140 (22%), Positives = 47/140 (33%), Gaps = 38/140 (27%)

Query: 265 KALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFL 324
           + L +G G GAL   L +     V GV++  V L +AR+       + ++V  GDA E  
Sbjct: 1   RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELP 60

Query: 325 EKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFV 384
            +                              D  FDVI+ D              +   
Sbjct: 61  PEA-----------------------------DESFDVIISDP---------PLHHLVED 82

Query: 385 RKDVLLAARLILSDFGIFVM 404
               L  AR +L   G+ V+
Sbjct: 83  LARFLEEARRLLKPGGVLVL 102

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|234843 PRK00811, PRK00811, spermidine synthase; Provisional

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 36/159 (22%), Positives = 59/159 (37%), Gaps = 63/159 (39%)

Query: 287 EVVGVEMDEVVLRVARQYF-----GLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341
           ++  VE+DE V+ V R+Y      G  D   +++ +GD I+F+ +               
Sbjct: 102 KITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE--------------- 146

Query: 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPV---------EFVRKDVLLAA 392
                          +N FDVI+VD          S  PV         EF         
Sbjct: 147 --------------TENSFDVIIVD----------STDPVGPAEGLFTKEFYE-----NC 177

Query: 393 RLILSDFGIFVMNVIPPNRSFYDMLIQEFRDVFQELYEI 431
           +  L + GIFV      + S +     E +D+ ++L E+
Sbjct: 178 KRALKEDGIFVAQ----SGSPF-YQADEIKDMHRKLKEV 211

Length = 283

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	478
KOG2352	482	consensus Predicted spermine/spermidine synthase [	100.0
PRK04457	262	spermidine synthase; Provisional	99.97
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	99.97
PLN02823	336	spermine synthase	99.96
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	99.96
PLN02366	308	spermidine synthase	99.95
PRK00811	283	spermidine synthase; Provisional	99.95
PRK01581	374	speE spermidine synthase; Validated	99.94
PRK00536	262	speE spermidine synthase; Provisional	99.93
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.91
PRK03612	521	spermidine synthase; Provisional	99.84
COG4262	508	Predicted spermidine synthase with an N-terminal m	99.74
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	99.74
COG4122	219	Predicted O-methyltransferase [General function pr	99.31
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.31
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.3
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.19
PLN02476	278	O-methyltransferase	99.17
PLN02589	247	caffeoyl-CoA O-methyltransferase	99.15
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.14
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.03
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.03
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.01
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	98.98
COG4123	248	Predicted O-methyltransferase [General function pr	98.98
PLN03075	296	nicotianamine synthase; Provisional	98.96
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	98.94
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	98.91
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	98.84
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	98.84
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.83
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	98.81
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.81
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	98.81
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.81
COG2521	287	Predicted archaeal methyltransferase [General func	98.81
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	98.8
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	98.8
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	98.8
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	98.77
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	98.75
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	98.74
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	98.74
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	98.74
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	98.74
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.74
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	98.73
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	98.73
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	98.72
PRK07402	196	precorrin-6B methylase; Provisional	98.72
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	98.72
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	98.71
PRK11207	197	tellurite resistance protein TehB; Provisional	98.7
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	98.7
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	98.69
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	98.69
TIGR00740	239	methyltransferase, putative. A simple BLAST search	98.67
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	98.67
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	98.65
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.65
PLN02233	261	ubiquinone biosynthesis methyltransferase	98.64
PRK04266	226	fibrillarin; Provisional	98.64
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	98.64
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	98.63
PLN02244	340	tocopherol O-methyltransferase	98.63
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.63
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.62
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.61
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	98.6
PRK14968	188	putative methyltransferase; Provisional	98.6
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	98.6
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	98.58
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	98.58
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.55
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	98.55
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.55
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.54
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	98.54
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.54
TIGR00438	188	rrmJ cell division protein FtsJ.	98.54
PRK14967	223	putative methyltransferase; Provisional	98.53
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	98.53
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.53
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	98.52
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	98.51
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	98.5
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	98.5
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.49
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.49
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.48
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.47
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	98.47
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.46
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	98.46
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.46
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	98.45
PLN02336	475	phosphoethanolamine N-methyltransferase	98.43
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.43
PRK10258	251	biotin biosynthesis protein BioC; Provisional	98.42
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.42
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.4
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.4
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	98.39
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	98.39
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.38
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	98.38
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.37
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.37
PTZ00146	293	fibrillarin; Provisional	98.36
PRK12335	287	tellurite resistance protein TehB; Provisional	98.36
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.35
PRK08317	241	hypothetical protein; Provisional	98.35
PLN02490	340	MPBQ/MSBQ methyltransferase	98.32
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	98.32
COG2890	280	HemK Methylase of polypeptide chain release factor	98.32
KOG2899	288	consensus Predicted methyltransferase [General fun	98.32
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	98.29
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	98.28
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.27
PRK13255	218	thiopurine S-methyltransferase; Reviewed	98.27
PLN02672	1082	methionine S-methyltransferase	98.25
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	98.23
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.23
PHA03412	241	putative methyltransferase; Provisional	98.23
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.23
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.22
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.22
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	98.22
PRK05785	226	hypothetical protein; Provisional	98.22
PHA03411	279	putative methyltransferase; Provisional	98.21
KOG4300	252	consensus Predicted methyltransferase [General fun	98.2
PRK06922	677	hypothetical protein; Provisional	98.2
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	98.19
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	98.19
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	98.17
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	98.17
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.16
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.15
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	98.14
TIGR03438	301	probable methyltransferase. This model represents	98.13
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.12
PLN02336	475	phosphoethanolamine N-methyltransferase	98.12
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.12
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	98.11
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	98.11
TIGR00452	314	methyltransferase, putative. Known examples to dat	98.11
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.1
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.09
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.08
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	98.08
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.02
PRK06202	232	hypothetical protein; Provisional	98.0
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.98
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	97.97
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	97.94
PLN02585	315	magnesium protoporphyrin IX methyltransferase	97.94
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	97.91
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	97.9
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	97.88
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	97.88
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	97.87
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	97.86
PRK13256	226	thiopurine S-methyltransferase; Reviewed	97.84
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	97.83
KOG3010	261	consensus Methyltransferase [General function pred	97.83
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	97.79
COG0742	187	N6-adenine-specific methylase [DNA replication, re	97.77
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	97.75
KOG2904	328	consensus Predicted methyltransferase [General fun	97.74
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	97.74
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	97.66
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	97.66
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	97.59
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	97.55
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	97.55
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	97.49
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.49
PLN02232	160	ubiquinone biosynthesis methyltransferase	97.48
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	97.44
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.4
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.39
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	97.39
KOG1271	227	consensus Methyltransferases [General function pre	97.38
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	97.38
COG4076	252	Predicted RNA methylase [General function predicti	97.37
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.34
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	97.32
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	97.31
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	97.3
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	97.29
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	97.27
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	97.25
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	97.22
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	97.22
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	96.97
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	96.93
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	96.93
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	96.93
PRK10742	250	putative methyltransferase; Provisional	96.8
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	96.67
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	96.63
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	96.56
PRK04148	134	hypothetical protein; Provisional	96.45
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	96.44
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	96.37
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	96.24
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	96.22
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	96.2
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	96.16
COG2265	432	TrmA SAM-dependent methyltransferases related to t	96.15
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	96.05
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	96.04
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	95.97
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	95.92
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	95.91
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	95.73
COG1041	347	Predicted DNA modification methylase [DNA replicat	95.63
COG2520	341	Predicted methyltransferase [General function pred	95.61
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	95.46
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	95.43
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	95.38
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	95.21
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	95.2
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	95.12
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	95.1
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	95.09
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	95.06
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	94.97
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	94.88
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	94.8
PF13679	141	Methyltransf_32: Methyltransferase domain	94.74
KOG2361	264	consensus Predicted methyltransferase [General fun	94.74
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	94.66
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	94.63
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	94.6
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	94.53
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	94.43
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	94.23
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	94.18
KOG2730	263	consensus Methylase [General function prediction o	94.16
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	93.88
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	93.73
PRK08818	370	prephenate dehydrogenase; Provisional	93.71
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	93.52
PRK11524	284	putative methyltransferase; Provisional	93.49
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.43
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	93.3
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	93.3
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	93.29
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	92.95
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	92.82
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	92.78
KOG2940	325	consensus Predicted methyltransferase [General fun	92.66
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.65
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	92.46
PRK07417	279	arogenate dehydrogenase; Reviewed	92.41
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	92.4
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	92.4
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	92.38
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	92.32
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	92.24
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.2
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	92.16
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.16
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	92.04
PF04378	245	RsmJ: Ribosomal RNA small subunit methyltransferas	91.88
PRK13699	227	putative methylase; Provisional	91.67
COG2384	226	Predicted SAM-dependent methyltransferase [General	91.63
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	91.5
KOG2352	482	consensus Predicted spermine/spermidine synthase [	91.23
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	91.11
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	90.96
PTZ00357	1072	methyltransferase; Provisional	90.94
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	90.89
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	90.83
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	90.82
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	90.76
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	90.28
PLN02494	477	adenosylhomocysteinase	90.15
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	90.01
COG0569	225	TrkA K+ transport systems, NAD-binding component [	89.88
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	89.85
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	89.82
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	89.81
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	89.71
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	89.69
PLN02256	304	arogenate dehydrogenase	89.6
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	89.54
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	89.19
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	89.15
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	88.71
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	88.57
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	88.51
PRK08306	296	dipicolinate synthase subunit A; Reviewed	88.32
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	88.3
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	87.94
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	87.84
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	87.77
PLN02712	667	arogenate dehydrogenase	87.68
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	87.67
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	87.47
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	87.3
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	87.19
PHA01634	156	hypothetical protein	87.19
PLN02740	381	Alcohol dehydrogenase-like	87.14
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	87.02
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	86.8
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	86.71
PRK13869	405	plasmid-partitioning protein RepA; Provisional	86.68
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	86.4
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	86.38
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	86.26
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	86.04
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	86.03
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	85.54
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	85.38
PRK08655	437	prephenate dehydrogenase; Provisional	85.29
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	85.05
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	85.04
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	85.02
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	84.99
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	84.9
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	84.89
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	84.87
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	84.68
PRK06545	359	prephenate dehydrogenase; Validated	84.59
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	84.36
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	84.16
PRK03562	621	glutathione-regulated potassium-efflux system prot	83.98
KOG0821	326	consensus Predicted ribosomal RNA adenine dimethyl	83.68
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	83.62
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	83.59
COG1568	354	Predicted methyltransferases [General function pre	83.35
PRK08507	275	prephenate dehydrogenase; Validated	83.27
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	83.21
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	83.18
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	83.12
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	83.08
PLN02712	667	arogenate dehydrogenase	82.87
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	82.87
PF06460	299	NSP13: Coronavirus NSP13; InterPro: IPR009461 This	82.61
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	82.56
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	82.48
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	82.44
COG2961	279	ComJ Protein involved in catabolism of external DN	82.36
PF14314	675	Methyltrans_Mon: Virus-capping methyltransferase	82.29
COG3897	218	Predicted methyltransferase [General function pred	81.96
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	81.92
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	81.87
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	81.87
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	81.81
PRK09496	453	trkA potassium transporter peripheral membrane com	81.64
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	81.39
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	81.32
PF06564	243	YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ p	81.16
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	81.11
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	80.85
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	80.75
PF00072	112	Response_reg: Response regulator receiver domain;	80.52
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	80.44
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	80.36
PRK06719	157	precorrin-2 dehydrogenase; Validated	80.3

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.2e-45  Score=384.20  Aligned_cols=315  Identities=31%  Similarity=0.450  Sum_probs=269.4

Q ss_pred             EeeCCcCcceeecChhhhHHHHhhccCCcEEEEEecCCCCCCCCCCCccCCC--chhhHHhhhhcccchhhhcccccccc
Q 038592           62 FVPKHREHDWIFSTESGHLQLLLSCHQFSRLILIGDEPTTDDSPDLPITTKH--DSFDQKSLEDSVKPLVIALSRKFCFD  139 (478)
Q Consensus        62 iVP~Gre~eWlfst~eG~~ql~~~s~~~~RLi~V~l~~~~~~~~~~~~~y~~--~~~v~~el~~~~~~~v~~L~P~~~~~  139 (478)
                      +||+||+++|+|+++.|++++. .+++..||++|++|++  +      .|..  ++.++++++    +.+..+.|++.+.
T Consensus       165 ~vp~~r~~e~~~~~p~G~~~~~-~~s~~~~l~~v~l~~g--q------~~~~~~~~~~~~~~s----~~~~~l~~~g~~~  231 (482)
T KOG2352|consen  165 VVPQGRKPEWLFGSPGGSKQMN-VSSSGERLAIVALHRG--Q------QYSTPQEDEVQDPLS----PFRRQLDPKGEPT  231 (482)
T ss_pred             eccCCCCeeeeecCccchhhhh-hhccCcceEEEEeccC--c------cccchHHhhhccccc----cceeecccccCCh
Confidence            4999999999999999999999 7779999999999997  4      6765  778888888    9999999999864


Q ss_pred             cCCccceeeeecCCcceeeEEEEeEecccCceEEEEEeeccccCCccccceeeEEEEeeCCCeEEeeeeecccccccccc
Q 038592          140 KNGIYNVPLLSYEDNVVSSVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDS  219 (478)
Q Consensus       140 ~~~~~~iP~ls~~~~i~~r~vl~~~~S~~~g~~vVedv~~e~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~  219 (478)
                      .   .+.|+++.|+++.+                                  |++.+..|.+++||++.-          
T Consensus       232 ~---~q~~~ls~g~d~~~----------------------------------~~l~~~~n~nv~q~~~k~----------  264 (482)
T KOG2352|consen  232 Q---QQREILSIGEDVGV----------------------------------RRLPPCGNMNVVQSEAKK----------  264 (482)
T ss_pred             h---hhhccccccccccc----------------------------------ccccCCCCcceecCchhc----------
Confidence            3   68899887766443                                  455555578999998510          


Q ss_pred             cccCCccccccCCcccchhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHH
Q 038592          220 VKIGGKVRFRPHIGVLVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVL  298 (478)
Q Consensus       220 ~~~~~~~~~~~d~~~L~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl  298 (478)
                            +    +.-+|+++||++|+++++|+.....  ...+.+.++||+|+|||.|++||+.++ ..++++||+||+|+
T Consensus       265 ------~----r~~~l~s~~h~~m~~g~aL~~n~~~--~~~~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l  332 (482)
T KOG2352|consen  265 ------D----RKPELASQYHQMMIGGLALIMNRPP--QKLDTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEML  332 (482)
T ss_pred             ------c----cCcccCcchhhhhhccceeccccCc--hhccccCcEEEEecCCCccccceeeecCccceeEEEEChhHh
Confidence                  1    1228999999999999999865432  233567899999999999999999997 48999999999999


Q ss_pred             HHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCC
Q 038592          299 RVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSA  378 (478)
Q Consensus       299 ~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~  378 (478)
                      ++|++||++..+.|.+||+.||++|+++.++.                       ...+..||+|++|+|++| +.||+|
T Consensus       333 ~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~-----------------------~~~~~~~dvl~~dvds~d-~~g~~~  388 (482)
T KOG2352|consen  333 EVATQYFGFMQSDRNKVHIADGLDFLQRTAKS-----------------------QQEDICPDVLMVDVDSKD-SHGMQC  388 (482)
T ss_pred             hccHhhhchhhhhhhhhhHhhchHHHHHHhhc-----------------------cccccCCcEEEEECCCCC-cccCcC
Confidence            99999999998779999999999999997642                       125778999999999999 889999


Q ss_pred             CCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHHHHhcCccEEEeecccceEEEEEEcCCCCCCcchhhhh
Q 038592          379 PPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEFRDVFQELYEIDVGNEENFVLIATGLSIVSSGSDCENA  458 (478)
Q Consensus       379 Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l~~vF~~v~~~~v~~~~N~Vl~a~~~~~~~~~~~~~~~  458 (478)
                      ||..|+...||+.++..|.|.|+|++|+++|+..+.+++...|+.+|+++|.+++++++|.|++|+..|......     
T Consensus       389 pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l~~vf~~l~~~~~~~~~N~il~~~~~~~~~~~~-----  463 (482)
T KOG2352|consen  389 PPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNLAKVFPQLYHHQLEEDVNEILIGQMPPKQKPGN-----  463 (482)
T ss_pred             CchHHHHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHhhhhhhHHHhhhhccCCCceeEEeecChhcCchh-----
Confidence            999999999999999999999999999999999999999999999999999999999999999999998765544     


Q ss_pred             hhHHHHHHhcccccccccCC
Q 038592          459 FGKKLRLLISGEYMDSIRKI  478 (478)
Q Consensus       459 ~~~~l~~~i~~~~~~~i~~~  478 (478)
                       ..++.+-..|.|.|.|-+|
T Consensus       464 -~~~~~~~~~~~~~~~~~~~  482 (482)
T KOG2352|consen  464 -LENLVRKMQGGYDDAINAI  482 (482)
T ss_pred             -hhhhhhhhccCcccccccC
Confidence             3444444667788887654

>PRK04457 spermidine synthase; Provisional

Probab=99.97  E-value=4.3e-29  Score=248.16  Aligned_cols=189  Identities=26%  Similarity=0.371  Sum_probs=162.3

Q ss_pred             eeeEEEEeeCCCeEEeeeeecccccccccccccCCccccccCCcccchhcHHHHHHHHhhhcccccccccCCCCCeEEEE
Q 038592          190 FRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGVLVHVYLVPMVASCALIGSYIGERIRFGFRPKALCV  269 (478)
Q Consensus       190 ~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~d~~~L~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvI  269 (478)
                      .+|.|.|.+  +.+||.+.+.                    ||..+.++|+++|+.++.+.+          .+++||+|
T Consensus        26 ~~R~L~f~~--~~~qs~~~~~--------------------~P~~l~~~y~~~m~~~l~~~~----------~~~~vL~I   73 (262)
T PRK04457         26 GVRSLHLGS--DTVQSSMRID--------------------DPSELELAYTRAMMGFLLFNP----------RPQHILQI   73 (262)
T ss_pred             CEEEEEECC--CcceeeeecC--------------------CcccccCHHHHHHHHHHhcCC----------CCCEEEEE
Confidence            489999964  5899987752                    577889999999998776543          26799999


Q ss_pred             eCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCC-CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCC
Q 038592          270 GVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLED-GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDG  347 (478)
Q Consensus       270 GlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~-d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~  347 (478)
                      |+|+|+++++++++. +.+|++||+||+|+++|+++|+... ++|++++++||.+|+.+                     
T Consensus        74 G~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~---------------------  132 (262)
T PRK04457         74 GLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV---------------------  132 (262)
T ss_pred             CCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh---------------------
Confidence            999999999998875 6899999999999999999999864 58999999999999865                     


Q ss_pred             CccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHHHHhcCc
Q 038592          348 NFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEFRDVFQE  427 (478)
Q Consensus       348 ~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l~~vF~~  427 (478)
                              ...+||+|++|.+++..      +|..+.+.+|++.++++|+|||++++|+++++.. ...++++++++|++
T Consensus       133 --------~~~~yD~I~~D~~~~~~------~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~-~~~~l~~l~~~F~~  197 (262)
T PRK04457        133 --------HRHSTDVILVDGFDGEG------IIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKR-YDRYLERLESSFEG  197 (262)
T ss_pred             --------CCCCCCEEEEeCCCCCC------CccccCcHHHHHHHHHhcCCCcEEEEEcCCCchh-HHHHHHHHHHhcCC
Confidence                    34579999999876542      4678899999999999999999999999988654 56789999999985


Q ss_pred             -cEEEeecccceEEEEEEcC
Q 038592          428 -LYEIDVGNEENFVLIATGL  446 (478)
Q Consensus       428 -v~~~~v~~~~N~Vl~a~~~  446 (478)
                       ++.++..+.+|.|++|++.
T Consensus       198 ~~~~~~~~~~~N~v~~a~~~  217 (262)
T PRK04457        198 RVLELPAESHGNVAVFAFKS  217 (262)
T ss_pred             cEEEEecCCCccEEEEEECC
Confidence             7888888889999999874

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=99.97  E-value=3.8e-29  Score=246.40  Aligned_cols=209  Identities=22%  Similarity=0.297  Sum_probs=166.7

Q ss_pred             ceeeEEEEeEecccCceEEEEEeeccccCCccccceeeEEEEeeCCCeEEeeeeecccccccccccccCCccccccCCcc
Q 038592          155 VVSSVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGV  234 (478)
Q Consensus       155 i~~r~vl~~~~S~~~g~~vVedv~~e~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~d~~~  234 (478)
                      .++.+++++.+|+||...++|+            ..++++++++  +.+|+.     +            +     |   
T Consensus        18 ~~v~~vl~~~~s~yQ~i~i~~~------------~~~G~~l~ld--g~~q~~-----e------------~-----d---   58 (246)
T PF01564_consen   18 YRVEEVLYEEKSPYQHIEIFES------------SPFGRILVLD--GDVQLS-----E------------R-----D---   58 (246)
T ss_dssp             EEEEEEEEEEEESSSEEEEEEE------------TTTEEEEEET--TEEEEE-----T------------T-----T---
T ss_pred             EEEEEEEEccCCCCCcEEEEEe------------cCcCcEEEEC--CeEEEE-----E------------e-----c---
Confidence            6778999999999999999983            1467887774  788974     1            1     1   


Q ss_pred             cchhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhCC-CEEEEEECChHHHHHHHHhcCCC----C
Q 038592          235 LVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLD-FEVVGVEMDEVVLRVARQYFGLE----D  309 (478)
Q Consensus       235 L~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~~----~  309 (478)
                       ...||++|++..++.++         +|++|||||+|+|++++.+.+++. .+|++|||||.|+++|++||+..    .
T Consensus        59 -e~~y~e~l~h~~~~~~~---------~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~  128 (246)
T PF01564_consen   59 -EFIYHEMLVHPPLLLHP---------NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLD  128 (246)
T ss_dssp             -HHHHHHHHHHHHHHHSS---------ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGG
T ss_pred             -hHHHHHHHhhhHhhcCC---------CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccC
Confidence             68899999998777664         389999999999999999999974 69999999999999999999752    5


Q ss_pred             CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCC-ceeEEEEeCCCCCCCCCCCCCCCCCChHHH
Q 038592          310 GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDN-KFDVIMVDLDSGDARNGTSAPPVEFVRKDV  388 (478)
Q Consensus       310 d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~yDvIivDv~s~d~~~g~s~Pp~~f~~~ef  388 (478)
                      |+|++++++||+.||++                             ... +||+||+|++++..      |+..|++.+|
T Consensus       129 d~r~~i~~~Dg~~~l~~-----------------------------~~~~~yDvIi~D~~dp~~------~~~~l~t~ef  173 (246)
T PF01564_consen  129 DPRVRIIIGDGRKFLKE-----------------------------TQEEKYDVIIVDLTDPDG------PAPNLFTREF  173 (246)
T ss_dssp             STTEEEEESTHHHHHHT-----------------------------SSST-EEEEEEESSSTTS------CGGGGSSHHH
T ss_pred             CCceEEEEhhhHHHHHh-----------------------------ccCCcccEEEEeCCCCCC------CcccccCHHH
Confidence            79999999999999986                             334 89999999987442      4555999999


Q ss_pred             HHHHHHccCcCcEEEEEeCCC--CchHHHHHHHHHHHhcCccEE--Eeecccc-e--EEEEEEcCC
Q 038592          389 LLAARLILSDFGIFVMNVIPP--NRSFYDMLIQEFRDVFQELYE--IDVGNEE-N--FVLIATGLS  447 (478)
Q Consensus       389 l~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~~--~~v~~~~-N--~Vl~a~~~~  447 (478)
                      ++.++++|+|+|++++|..++  +....+.+.++++++|+.+..  ..++... +  ...+|++..
T Consensus       174 ~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~vP~~~~~~~~~~~~s~~~  239 (246)
T PF01564_consen  174 YQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVKPYTAYVPSYGSGWWSFASASKDI  239 (246)
T ss_dssp             HHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEEEEEEECTTSCSSEEEEEEEESST
T ss_pred             HHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCceEEEEEEcCeecccceeEEEEeCCC
Confidence            999999999999999998654  566788899999999997654  4454422 3  334455543

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PLN02823 spermine synthase

Probab=99.96  E-value=2.6e-28  Score=250.03  Aligned_cols=212  Identities=21%  Similarity=0.244  Sum_probs=170.7

Q ss_pred             ceeeEEEEeEecccCceEEEEEeeccccCCccccceeeEEEEeeCCCeEEeeeeecccccccccccccCCccccccCCcc
Q 038592          155 VVSSVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGV  234 (478)
Q Consensus       155 i~~r~vl~~~~S~~~g~~vVedv~~e~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~d~~~  234 (478)
                      +.+.+++++.+|+||...|+++     .       .+++++|++  +.+||...                          
T Consensus        45 ~~~~~vl~~~~S~yQ~I~V~~~-----~-------~~g~~L~lD--g~~qs~~~--------------------------   84 (336)
T PLN02823         45 YAVNSVLHTGTSEFQDIALVDT-----K-------PFGKVLIID--GKMQSAEA--------------------------   84 (336)
T ss_pred             EEeccEEEeccCCCeEEEEEEC-----C-------CCceEEEEC--Cccccccc--------------------------
Confidence            5677899999999998888873     1       357888884  78997410                          


Q ss_pred             cchhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhCC-CEEEEEECChHHHHHHHHhcCCC----C
Q 038592          235 LVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLD-FEVVGVEMDEVVLRVARQYFGLE----D  309 (478)
Q Consensus       235 L~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~~----~  309 (478)
                      ..+.||++|++..++.++         .|++|||||+|+|++++++.++.+ .+|++|||||+|+++|++||+..    .
T Consensus        85 de~~YhE~l~h~~l~~~~---------~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~  155 (336)
T PLN02823         85 DEFVYHESLVHPALLHHP---------NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFC  155 (336)
T ss_pred             hHHHHHHHHHhHHHhhCC---------CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhccccccccc
Confidence            156799999988766543         378999999999999999998864 69999999999999999999864    4


Q ss_pred             CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHH
Q 038592          310 GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVL  389 (478)
Q Consensus       310 d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl  389 (478)
                      ++|++++++||++||++                             ...+||+||+|++++..    .+||..|++.+||
T Consensus       156 dprv~v~~~Da~~~L~~-----------------------------~~~~yDvIi~D~~dp~~----~~~~~~Lyt~eF~  202 (336)
T PLN02823        156 DKRLELIINDARAELEK-----------------------------RDEKFDVIIGDLADPVE----GGPCYQLYTKSFY  202 (336)
T ss_pred             CCceEEEEChhHHHHhh-----------------------------CCCCccEEEecCCCccc----cCcchhhccHHHH
Confidence            79999999999999965                             45679999999865321    1357789999999


Q ss_pred             H-HHHHccCcCcEEEEEeCCC----CchHHHHHHHHHHHhcCccEEEee--c--ccceEEEEEEcCCC
Q 038592          390 L-AARLILSDFGIFVMNVIPP----NRSFYDMLIQEFRDVFQELYEIDV--G--NEENFVLIATGLSI  448 (478)
Q Consensus       390 ~-~~~~~L~~~Gilv~N~~~~----~~~~~~~v~~~l~~vF~~v~~~~v--~--~~~N~Vl~a~~~~~  448 (478)
                      + .++++|+|+|++++|..+.    +.+....++++|+++|++++.+..  +  .+....++|++.|.
T Consensus       203 ~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~vF~~v~~y~~~vPsf~~~w~f~~aS~~~~  270 (336)
T PLN02823        203 ERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQVFKYVVPYTAHVPSFADTWGWVMASDHPF  270 (336)
T ss_pred             HHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHhCCCEEEEEeecCCCCCceEEEEEeCCcc
Confidence            9 9999999999999998764    356678899999999999866543  2  22244577888764

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=99.96  E-value=1.6e-27  Score=238.33  Aligned_cols=213  Identities=20%  Similarity=0.264  Sum_probs=168.8

Q ss_pred             ceeeEEEEeEecccCceEEEEEeeccccCCccccceeeEEEEeeCCCeEEeeeeecccccccccccccCCccccccCCcc
Q 038592          155 VVSSVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGV  234 (478)
Q Consensus       155 i~~r~vl~~~~S~~~g~~vVedv~~e~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~d~~~  234 (478)
                      ..+.+++++++|.++...+++.            ..++++..++  +.+|+.-+                          
T Consensus        18 ~~v~~~l~~~ks~~q~i~i~~~------------~~~g~~l~ld--g~~q~~e~--------------------------   57 (282)
T COG0421          18 FRVERVLYEEKSEYQDIEIFES------------EDFGKVLVLD--GVVQLTER--------------------------   57 (282)
T ss_pred             eEeeeeeeeccCCceEEEEEec------------cccceEEEec--Chhhhccc--------------------------
Confidence            4578899999999999999971            1356676664  78897511                          


Q ss_pred             cchhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhCC-CEEEEEECChHHHHHHHHhcCCCC----
Q 038592          235 LVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLD-FEVVGVEMDEVVLRVARQYFGLED----  309 (478)
Q Consensus       235 L~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~~~----  309 (478)
                      ..+.||+++++..+++++         +|++|||||+|.|++++++.++.+ .++++|||||.|+++||+||+...    
T Consensus        58 de~~yhEml~h~~~~ah~---------~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~  128 (282)
T COG0421          58 DEFIYHEMLAHVPLLAHP---------NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGAD  128 (282)
T ss_pred             hhHHHHHHHHhchhhhCC---------CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccC
Confidence            268999999999887765         368999999999999999999985 699999999999999999998765    


Q ss_pred             CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHH
Q 038592          310 GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVL  389 (478)
Q Consensus       310 d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl  389 (478)
                      |||++++++||.+|+++                             ...+||+||+|.+++.      .|.+.|++++|+
T Consensus       129 dpRv~i~i~Dg~~~v~~-----------------------------~~~~fDvIi~D~tdp~------gp~~~Lft~eFy  173 (282)
T COG0421         129 DPRVEIIIDDGVEFLRD-----------------------------CEEKFDVIIVDSTDPV------GPAEALFTEEFY  173 (282)
T ss_pred             CCceEEEeccHHHHHHh-----------------------------CCCcCCEEEEcCCCCC------CcccccCCHHHH
Confidence            89999999999999987                             3448999999887652      267889999999


Q ss_pred             HHHHHccCcCcEEEEEeCCC--CchHHHHHHHHHHHhcCcc--EEEeecc--cc-eEEEEEE-cCCCCCC
Q 038592          390 LAARLILSDFGIFVMNVIPP--NRSFYDMLIQEFRDVFQEL--YEIDVGN--EE-NFVLIAT-GLSIVSS  451 (478)
Q Consensus       390 ~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v--~~~~v~~--~~-N~Vl~a~-~~~~~~~  451 (478)
                      +.|+++|+++|+++.|..++  ..+....+.+.++++|+.+  |...+..  .+ -.+.+++ +.+....
T Consensus       174 ~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~vf~~~~~~~~~ipt~~~g~~~f~~~s~~~~~~~~  243 (282)
T COG0421         174 EGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRVFSIVPPYVAPIPTYPSGFWGFIVASFNKAHPLK  243 (282)
T ss_pred             HHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhhccccccceeccceecCCceEEEEeecCCCCccc
Confidence            99999999999999996554  2345677899999999953  4444432  22 1344555 4444433

>PLN02366 spermidine synthase

Probab=99.95  E-value=4.4e-26  Score=231.23  Aligned_cols=209  Identities=18%  Similarity=0.222  Sum_probs=164.4

Q ss_pred             ceeeEEEEeEecccCceEEEEEeeccccCCccccceeeEEEEeeCCCeEEeeeeecccccccccccccCCccccccCCcc
Q 038592          155 VVSSVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGV  234 (478)
Q Consensus       155 i~~r~vl~~~~S~~~g~~vVedv~~e~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~d~~~  234 (478)
                      +++.+++++.+|+||...|+|.-            .+.++++++  +.+|+.-                      .|   
T Consensus        33 ~~v~~~l~~~~s~yQ~i~v~~~~------------~~g~~L~lD--g~~q~~~----------------------~d---   73 (308)
T PLN02366         33 LKVEKVLFQGKSDFQDVLVFESA------------TYGKVLVLD--GVIQLTE----------------------RD---   73 (308)
T ss_pred             EEEeeEEEeccCCCeeEEEEEcC------------CCceEEEEC--CEeeecC----------------------cc---
Confidence            67889999999999999999831            244555664  7889740                      12   


Q ss_pred             cchhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhCC-CEEEEEECChHHHHHHHHhcCC----CC
Q 038592          235 LVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLD-FEVVGVEMDEVVLRVARQYFGL----ED  309 (478)
Q Consensus       235 L~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~----~~  309 (478)
                       ++.||++|++..++.++         ++++||+||+|+|++++.+.++++ .+|++||||++|+++|++||..    ..
T Consensus        74 -e~~Y~e~l~h~~l~~~~---------~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~  143 (308)
T PLN02366         74 -ECAYQEMITHLPLCSIP---------NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFD  143 (308)
T ss_pred             -HHHHHHHHHHHHHhhCC---------CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccC
Confidence             68899988886554432         378999999999999999999875 6999999999999999999963    25


Q ss_pred             CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHH
Q 038592          310 GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVL  389 (478)
Q Consensus       310 d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl  389 (478)
                      ++|++++++||++|+++.                            .+++||+||+|++++.      .|+..|++.+|+
T Consensus       144 dpRv~vi~~Da~~~l~~~----------------------------~~~~yDvIi~D~~dp~------~~~~~L~t~ef~  189 (308)
T PLN02366        144 DPRVNLHIGDGVEFLKNA----------------------------PEGTYDAIIVDSSDPV------GPAQELFEKPFF  189 (308)
T ss_pred             CCceEEEEChHHHHHhhc----------------------------cCCCCCEEEEcCCCCC------CchhhhhHHHHH
Confidence            799999999999999751                            2567999999986543      257789999999


Q ss_pred             HHHHHccCcCcEEEEEeCCC--CchHHHHHHHHHHHhcC-ccE--EEeecc---cceEEEEEEcC
Q 038592          390 LAARLILSDFGIFVMNVIPP--NRSFYDMLIQEFRDVFQ-ELY--EIDVGN---EENFVLIATGL  446 (478)
Q Consensus       390 ~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~-~v~--~~~v~~---~~N~Vl~a~~~  446 (478)
                      +.++++|+|||++++|..+.  ..+..+.+.++|+++|+ .+.  ...++.   +.-..++|++.
T Consensus       190 ~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F~~~v~~~~~~vPsy~~g~w~f~~as~~  254 (308)
T PLN02366        190 ESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETFKGSVNYAWTTVPTYPSGVIGFVLCSKE  254 (308)
T ss_pred             HHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHCCCceeEEEecCCCcCCCceEEEEEECC
Confidence            99999999999999987664  46667889999999995 543  233332   22345677776

>PRK00811 spermidine synthase; Provisional

Probab=99.95  E-value=5e-26  Score=228.60  Aligned_cols=208  Identities=22%  Similarity=0.241  Sum_probs=164.8

Q ss_pred             ceeeEEEEeEecccCceEEEEEeeccccCCccccceeeEEEEeeCCCeEEeeeeecccccccccccccCCccccccCCcc
Q 038592          155 VVSSVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGV  234 (478)
Q Consensus       155 i~~r~vl~~~~S~~~g~~vVedv~~e~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~d~~~  234 (478)
                      +...+++++.+|+|+...|++.     .       .+.|++++  ++.+||..                          .
T Consensus        18 ~~~~~~l~~~~s~yq~i~v~~~-----~-------~~g~~l~l--Dg~~q~~~--------------------------~   57 (283)
T PRK00811         18 FRVKKVLYEEKSPFQRIEIFET-----P-------EFGRLLAL--DGCVMTTE--------------------------R   57 (283)
T ss_pred             EeeccEEEEcCCCCeeEEEEEc-----C-------CccEEEEE--CCeeeecC--------------------------c
Confidence            5677899999999998888872     1       24455555  48899741                          1


Q ss_pred             cchhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhCC-CEEEEEECChHHHHHHHHhcCC-----C
Q 038592          235 LVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLD-FEVVGVEMDEVVLRVARQYFGL-----E  308 (478)
Q Consensus       235 L~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~-----~  308 (478)
                      ..+.||++|++..++.++         .+++||+||+|+|++++.+.++++ .+|++||||++|+++|++||..     .
T Consensus        58 de~~Y~e~l~h~~~~~~~---------~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~  128 (283)
T PRK00811         58 DEFIYHEMMTHVPLFAHP---------NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAY  128 (283)
T ss_pred             chhhHHHHhhhHHHhhCC---------CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccc
Confidence            168999999887666543         378999999999999999988864 6999999999999999999952     2


Q ss_pred             CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHH
Q 038592          309 DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDV  388 (478)
Q Consensus       309 ~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~ef  388 (478)
                      .++|++++++||++|+++                             ...+||+||+|+.++.      +|+..+++.+|
T Consensus       129 ~d~rv~v~~~Da~~~l~~-----------------------------~~~~yDvIi~D~~dp~------~~~~~l~t~ef  173 (283)
T PRK00811        129 DDPRVELVIGDGIKFVAE-----------------------------TENSFDVIIVDSTDPV------GPAEGLFTKEF  173 (283)
T ss_pred             cCCceEEEECchHHHHhh-----------------------------CCCcccEEEECCCCCC------CchhhhhHHHH
Confidence            589999999999999865                             3568999999875432      36778999999


Q ss_pred             HHHHHHccCcCcEEEEEeCCC--CchHHHHHHHHHHHhcCccEEEe--ecc--cce-EEEEEEcC
Q 038592          389 LLAARLILSDFGIFVMNVIPP--NRSFYDMLIQEFRDVFQELYEID--VGN--EEN-FVLIATGL  446 (478)
Q Consensus       389 l~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~~~~--v~~--~~N-~Vl~a~~~  446 (478)
                      ++.++++|+|||++++|..++  +.+....+.++|+++|+++..+.  ++.  +++ ..++|++.
T Consensus       174 ~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~vp~~~~~~w~f~~as~~  238 (283)
T PRK00811        174 YENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFPIVRPYQAAIPTYPSGLWSFTFASKN  238 (283)
T ss_pred             HHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHCCCEEEEEeECCcccCchheeEEeecC
Confidence            999999999999999998765  45677889999999999876554  322  122 23778774

>PRK01581 speE spermidine synthase; Validated

Probab=99.94  E-value=3.5e-25  Score=226.92  Aligned_cols=211  Identities=18%  Similarity=0.138  Sum_probs=164.0

Q ss_pred             eeeEEEEeEecccCceEEEEEeeccccCCccccceeeEEEEeeCCCeEEeeeeecccccccccccccCCccccccCCccc
Q 038592          156 VSSVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGVL  235 (478)
Q Consensus       156 ~~r~vl~~~~S~~~g~~vVedv~~e~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~d~~~L  235 (478)
                      +..+++++++|+||...|+|.     .       .| + +|+  +|.+|+..                      .|    
T Consensus        95 ~~~~vl~~~~S~yQ~I~I~et-----~-------~~-~-L~L--DG~~Q~se----------------------~D----  132 (374)
T PRK01581         95 GEHTNLFAEKSNYQNINLLQV-----S-------DI-R-LYL--DKQLQFSS----------------------VD----  132 (374)
T ss_pred             cccCEEEecCCCCceEEEEEc-----C-------CE-E-EEE--CCeecccc----------------------cc----
Confidence            455899999999999999982     1       24 3 466  48899751                      12    


Q ss_pred             chhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhCC-CEEEEEECChHHHHHHHHhcCCC------
Q 038592          236 VHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLD-FEVVGVEMDEVVLRVARQYFGLE------  308 (478)
Q Consensus       236 ~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~~------  308 (478)
                      ++.||++|++..++.++         .|++||+||+|+|++++.+.++.+ .+|++|||||+|+++|++++.+.      
T Consensus       133 E~iYHE~Lvhp~m~~h~---------~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~  203 (374)
T PRK01581        133 EQIYHEALVHPIMSKVI---------DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSA  203 (374)
T ss_pred             HHHHHHHHHHHHHHhCC---------CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhcccc
Confidence            68899999998766543         378999999999999999998874 69999999999999999976553      


Q ss_pred             -CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHH
Q 038592          309 -DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKD  387 (478)
Q Consensus       309 -~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~e  387 (478)
                       .++|++++++||++|+++                             ...+||+||+|+.++..     .++..+++.+
T Consensus       204 ~~DpRV~vvi~Da~~fL~~-----------------------------~~~~YDVIIvDl~DP~~-----~~~~~LyT~E  249 (374)
T PRK01581        204 FFDNRVNVHVCDAKEFLSS-----------------------------PSSLYDVIIIDFPDPAT-----ELLSTLYTSE  249 (374)
T ss_pred             CCCCceEEEECcHHHHHHh-----------------------------cCCCccEEEEcCCCccc-----cchhhhhHHH
Confidence             479999999999999975                             35679999999764321     2356799999


Q ss_pred             HHHHHHHccCcCcEEEEEeCCC--CchHHHHHHHHHHHhcCccEEEe--ec--ccceEEEEEEcCCCCCC
Q 038592          388 VLLAARLILSDFGIFVMNVIPP--NRSFYDMLIQEFRDVFQELYEID--VG--NEENFVLIATGLSIVSS  451 (478)
Q Consensus       388 fl~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~~~~--v~--~~~N~Vl~a~~~~~~~~  451 (478)
                      ||+.++++|+|||+++++..++  ....+..+.++|+++|..+..+.  ++  .+.-...+|++.+...+
T Consensus       250 Fy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~WgF~~as~~~~~~~  319 (374)
T PRK01581        250 LFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTDWGFHIAANSAYVLD  319 (374)
T ss_pred             HHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEecCCCCCceEEEEEeCCccccc
Confidence            9999999999999999987665  23445668999999999765443  22  22244577787776433

>PRK00536 speE spermidine synthase; Provisional

Probab=99.93  E-value=5.4e-25  Score=217.99  Aligned_cols=194  Identities=12%  Similarity=0.009  Sum_probs=154.7

Q ss_pred             ceeeEEEEeEecccCceEEEEEeeccccCCccccceeeEEEEeeCCCeEEeeeeecccccccccccccCCccccccCCcc
Q 038592          155 VVSSVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGV  234 (478)
Q Consensus       155 i~~r~vl~~~~S~~~g~~vVedv~~e~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~d~~~  234 (478)
                      +++++++++++|+||...|+|.            ..|+|++.++  +.++||                  +     |   
T Consensus        15 ~~v~~~L~~~kS~~Q~i~i~es------------~~fGr~LvLD--~~~~te------------------~-----d---   54 (262)
T PRK00536         15 YTIEAKLLDVRSEHNILEIFKS------------KDFGEIAMLN--KQLLFK------------------N-----F---   54 (262)
T ss_pred             EEEEEEEEccCCCCcEEEEEEc------------cccccEEEEe--eeeeec------------------c-----h---
Confidence            6788999999999999999982            2477888876  444433                  1     2   


Q ss_pred             cchhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC----CC
Q 038592          235 LVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE----DG  310 (478)
Q Consensus       235 L~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~----~d  310 (478)
                       ++.||++|+|..++.++         +|+||||||+|.|+.++.+.+|.. +|+.||||++|+++||+||.-.    .|
T Consensus        55 -EfiYHEmLvHppl~~h~---------~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~D  123 (262)
T PRK00536         55 -LHIESELLAHMGGCTKK---------ELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNN  123 (262)
T ss_pred             -hhhHHHHHHHHHHhhCC---------CCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcC
Confidence             79999999999887764         489999999999999999999975 9999999999999999999632    68


Q ss_pred             CCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHH
Q 038592          311 EFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLL  390 (478)
Q Consensus       311 ~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~  390 (478)
                      ||+++++     ++.+                            ...++||+||+|.               +++++|++
T Consensus       124 pRv~l~~-----~~~~----------------------------~~~~~fDVIIvDs---------------~~~~~fy~  155 (262)
T PRK00536        124 KNFTHAK-----QLLD----------------------------LDIKKYDLIICLQ---------------EPDIHKID  155 (262)
T ss_pred             CCEEEee-----hhhh----------------------------ccCCcCCEEEEcC---------------CCChHHHH
Confidence            9999997     3333                            1346899999983               13478999


Q ss_pred             HHHHccCcCcEEEEEeCCC--CchHHHHHHHHHHHhcCccEEE--eeccc-ceEEEEEEcCC
Q 038592          391 AARLILSDFGIFVMNVIPP--NRSFYDMLIQEFRDVFQELYEI--DVGNE-ENFVLIATGLS  447 (478)
Q Consensus       391 ~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~~~--~v~~~-~N~Vl~a~~~~  447 (478)
                      .++++|+|||+++++..++  +.+....+.++|+++|+.+..+  .+... .....+|++.+
T Consensus       156 ~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~~v~~y~~~vp~~g~wgf~~aS~~~  217 (262)
T PRK00536        156 GLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFFSIAMPFVAPLRILSNKGYIYASFKT  217 (262)
T ss_pred             HHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhCCceEEEEecCCCcchhhhheecCCC
Confidence            9999999999999998877  5777889999999999976443  33322 34456777763

>TIGR00417 speE spermidine synthase

Probab=99.91  E-value=3.9e-23  Score=206.25  Aligned_cols=208  Identities=18%  Similarity=0.214  Sum_probs=163.0

Q ss_pred             ceeeEEEEeEecccCceEEEEEeeccccCCccccceeeEEEEeeCCCeEEeeeeecccccccccccccCCccccccCCcc
Q 038592          155 VVSSVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGV  234 (478)
Q Consensus       155 i~~r~vl~~~~S~~~g~~vVedv~~e~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~d~~~  234 (478)
                      +++.+++++.+|+|+...|+++-            .++|+++++  +.+||.-                          .
T Consensus        14 ~~~~~~l~~~~s~~q~i~v~~~~------------~~g~~l~ld--g~~q~~~--------------------------~   53 (270)
T TIGR00417        14 MKVKKVLYHEKSEFQDLEIFETE------------EFGNVLVLD--GVVQTTE--------------------------R   53 (270)
T ss_pred             EEeeeEEEEccCCCeeEEEEEcC------------CCceEEEEC--CcccccC--------------------------c
Confidence            56789999999999988888721            245666664  7899750                          1


Q ss_pred             cchhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCC----CC
Q 038592          235 LVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGL----ED  309 (478)
Q Consensus       235 L~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~----~~  309 (478)
                      ..+.||++|++..++.++         +|++||+||+|+|++++.+.++. ..++++||+|++|++.|+++|..    ..
T Consensus        54 ~e~~y~e~l~~~~l~~~~---------~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~  124 (270)
T TIGR00417        54 DEFIYHEMIAHVPLFTHP---------NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYD  124 (270)
T ss_pred             hHHHHHHHhhhhHhhcCC---------CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhccccc
Confidence            158899999876555443         36799999999999999888876 46999999999999999999843    24


Q ss_pred             CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHH
Q 038592          310 GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVL  389 (478)
Q Consensus       310 d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl  389 (478)
                      +++++++++||++|+++                             ...+||+||+|.....      .|+..+++.+|+
T Consensus       125 ~~~v~i~~~D~~~~l~~-----------------------------~~~~yDvIi~D~~~~~------~~~~~l~~~ef~  169 (270)
T TIGR00417       125 DPRVDLQIDDGFKFLAD-----------------------------TENTFDVIIVDSTDPV------GPAETLFTKEFY  169 (270)
T ss_pred             CCceEEEECchHHHHHh-----------------------------CCCCccEEEEeCCCCC------CcccchhHHHHH
Confidence            68999999999999975                             3568999999976532      246678999999


Q ss_pred             HHHHHccCcCcEEEEEeCCC--CchHHHHHHHHHHHhcCccEEEe--ec---ccceEEEEEEcC
Q 038592          390 LAARLILSDFGIFVMNVIPP--NRSFYDMLIQEFRDVFQELYEID--VG---NEENFVLIATGL  446 (478)
Q Consensus       390 ~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~~~~--v~---~~~N~Vl~a~~~  446 (478)
                      +.++++|+|||++++|..++  .......+.++++++|+++..+.  ++   .+....++|++.
T Consensus       170 ~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~~v~~~~~~vp~~~~g~~~~~~as~~  233 (270)
T TIGR00417       170 ELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAFPITEYYTANIPTYPSGLWTFTIGSKN  233 (270)
T ss_pred             HHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCCCeEEEEEEcCccccchhEEEEEECC
Confidence            99999999999999997655  45667788999999999875443  22   233466778873

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK03612 spermidine synthase; Provisional

Probab=99.84  E-value=2e-19  Score=194.84  Aligned_cols=212  Identities=18%  Similarity=0.185  Sum_probs=154.4

Q ss_pred             ceeeEEEEeEecccCceEEEEEeeccccCCccccceeeEEEEeeCCCeEEeeeeecccccccccccccCCccccccCCcc
Q 038592          155 VVSSVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGV  234 (478)
Q Consensus       155 i~~r~vl~~~~S~~~g~~vVedv~~e~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~d~~~  234 (478)
                      ....+++++.+|+|+...++|+-..  .+      .-|+| |+  ++.+|...                      .|   
T Consensus       236 ~~~~~v~~~~~s~yq~i~v~~~~~~--~~------~~~~L-~l--dG~~q~s~----------------------~d---  279 (521)
T PRK03612        236 LYGDPVVYAEQTPYQRIVVTRRGNG--RG------PDLRL-YL--NGRLQFSS----------------------RD---  279 (521)
T ss_pred             hccCeEEEEccCCCeEEEEEEecCC--CC------cceEE-EE--CCEeeccC----------------------cc---
Confidence            3456789999999988877763210  01      12555 44  36678420                      12   


Q ss_pred             cchhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhCC-CEEEEEECChHHHHHHHHhcCCC-----
Q 038592          235 LVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLD-FEVVGVEMDEVVLRVARQYFGLE-----  308 (478)
Q Consensus       235 L~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~~-----  308 (478)
                       ++.||+++++..+..++         ++++||+||+|+|.+++.+.++.. .+|++||+||+|++.|++++.+.     
T Consensus       280 -e~~y~e~l~~~~l~~~~---------~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~  349 (521)
T PRK03612        280 -EYRYHEALVHPAMAASA---------RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGG  349 (521)
T ss_pred             -HHHHHHHHHHHHHhhCC---------CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhcc
Confidence             46799998876544332         378999999999999999988875 79999999999999999955332     


Q ss_pred             --CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChH
Q 038592          309 --DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRK  386 (478)
Q Consensus       309 --~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~  386 (478)
                        +++|++++++|+++|+++                             ..++||+|++|..+...     ..+..+++.
T Consensus       350 ~~~dprv~vi~~Da~~~l~~-----------------------------~~~~fDvIi~D~~~~~~-----~~~~~L~t~  395 (521)
T PRK03612        350 ALDDPRVTVVNDDAFNWLRK-----------------------------LAEKFDVIIVDLPDPSN-----PALGKLYSV  395 (521)
T ss_pred             ccCCCceEEEEChHHHHHHh-----------------------------CCCCCCEEEEeCCCCCC-----cchhccchH
Confidence              468999999999999865                             34689999999754331     113568999


Q ss_pred             HHHHHHHHccCcCcEEEEEeCCC--CchHHHHHHHHHHHh-cCccE--EEeecccce-EEEEEEcCC
Q 038592          387 DVLLAARLILSDFGIFVMNVIPP--NRSFYDMLIQEFRDV-FQELY--EIDVGNEEN-FVLIATGLS  447 (478)
Q Consensus       387 efl~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~v-F~~v~--~~~v~~~~N-~Vl~a~~~~  447 (478)
                      +|++.++++|+|||++++|..++  +.+....+.++++++ | .+.  ...+...+. ...+|++.+
T Consensus       396 ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf-~v~~~~~~vps~g~w~f~~as~~~  461 (521)
T PRK03612        396 EFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL-ATTPYHVNVPSFGEWGFVLAGAGA  461 (521)
T ss_pred             HHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC-EEEEEEeCCCCcchhHHHeeeCCC
Confidence            99999999999999999998765  455667899999999 8 543  333333222 245676654

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=99.74  E-value=4e-17  Score=164.72  Aligned_cols=209  Identities=15%  Similarity=0.152  Sum_probs=150.6

Q ss_pred             eEEEEeEecccCceEEEEEeeccccCCccccceeeEEEEeeCCCeEEeeeeecccccccccccccCCccccccCCcccch
Q 038592          158 SVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGVLVH  237 (478)
Q Consensus       158 r~vl~~~~S~~~g~~vVedv~~e~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~d~~~L~~  237 (478)
                      .+|+|...|+||.+.+-+    -  +      --+||...   +-.|-..+                      |    +.
T Consensus       235 deIIh~~qspYQ~iVvTr----~--g------~d~rLYld---G~LQfsTr----------------------D----e~  273 (508)
T COG4262         235 DEIIHAIQSPYQRIVVTR----R--G------DDLRLYLD---GGLQFSTR----------------------D----EY  273 (508)
T ss_pred             CceeeeccCccceEEEEE----e--c------CceEEEEc---Cceeeeec----------------------h----hh
Confidence            468899999998776665    1  1      12677663   45573211                      2    57


Q ss_pred             hcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhCC-CEEEEEECChHHHHHHHHhcCC-------CC
Q 038592          238 VYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLD-FEVVGVEMDEVVLRVARQYFGL-------ED  309 (478)
Q Consensus       238 ~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~-------~~  309 (478)
                      .||+.++....-  + .      ....+|||+|+|.|...+.|.++++ .+|+-||+||.|+++|++.--+       -.
T Consensus       274 RYhEsLV~pals--~-~------~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~  344 (508)
T COG4262         274 RYHESLVYPALS--S-V------RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFS  344 (508)
T ss_pred             hhhheeeecccc--c-c------cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCcc
Confidence            799988875321  0 0      1157999999999999999999996 5999999999999999844322       25


Q ss_pred             CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHH
Q 038592          310 GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVL  389 (478)
Q Consensus       310 d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl  389 (478)
                      |||++|+++|+.+|++.                             ....||+||+|+-+++...     -..+++.||+
T Consensus       345 dpRv~Vv~dDAf~wlr~-----------------------------a~~~fD~vIVDl~DP~tps-----~~rlYS~eFY  390 (508)
T COG4262         345 DPRVTVVNDDAFQWLRT-----------------------------AADMFDVVIVDLPDPSTPS-----IGRLYSVEFY  390 (508)
T ss_pred             CCeeEEEeccHHHHHHh-----------------------------hcccccEEEEeCCCCCCcc-----hhhhhhHHHH
Confidence            89999999999999987                             3558999999997655310     2458999999


Q ss_pred             HHHHHccCcCcEEEEEeCCC--CchHHHHHHHHHHHhcCccE----EEeecccceEEEEEEcCCCCCC
Q 038592          390 LAARLILSDFGIFVMNVIPP--NRSFYDMLIQEFRDVFQELY----EIDVGNEENFVLIATGLSIVSS  451 (478)
Q Consensus       390 ~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~----~~~v~~~~N~Vl~a~~~~~~~~  451 (478)
                      ..++++|+++|+++++..++  .++.+-.+..++|+.=-.++    -++.-++ --..+|.+.+..+.
T Consensus       391 ~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~~Pyhv~VPTFGe-WGf~l~~~~~~~fe  457 (508)
T COG4262         391 RLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRVWPYHVHVPTFGE-WGFILAAPGDADFE  457 (508)
T ss_pred             HHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhCcceeeeeEEecCcccc-cceeecccccCCCC
Confidence            99999999999999999887  45556677888887532232    2232222 23456766665443

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=99.74  E-value=1.5e-18  Score=171.18  Aligned_cols=194  Identities=21%  Similarity=0.245  Sum_probs=152.5

Q ss_pred             ceeeEEEEeEecccCceEEEEEeeccccCCccccceeeEEEEeeCCCeEEeeeeecccccccccccccCCccccccCCcc
Q 038592          155 VVSSVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGV  234 (478)
Q Consensus       155 i~~r~vl~~~~S~~~g~~vVedv~~e~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~d~~~  234 (478)
                      +++..+++.++|.++..++.|.-            .+|+-.-+  ++++|..-                      .|   
T Consensus        63 LkVe~vl~~ekS~~qdvlvf~s~------------tyg~vlvl--Dgviqlte----------------------~d---  103 (337)
T KOG1562|consen   63 LKVEKVLHDEKSDSQDVLVFESA------------TYGKVLVL--DGVIQLTE----------------------RD---  103 (337)
T ss_pred             EEeeeecccCchhHHHHHHHHHh------------hhheeeee--CCeeeCCc----------------------cc---
Confidence            78899999999999999998732            34444333  58999541                      11   


Q ss_pred             cchhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhCC-CEEEEEECChHHHHHHHHhcCCC----C
Q 038592          235 LVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLD-FEVVGVEMDEVVLRVARQYFGLE----D  309 (478)
Q Consensus       235 L~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~~----~  309 (478)
                       .+.|.+++++ +++...        .+|++|||||+|.|...+...+|.. -+|+.+|||..|+++.++||.-.    +
T Consensus       104 -e~~Yqemi~~-l~l~s~--------~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~  173 (337)
T KOG1562|consen  104 -EFAYQEMIAH-LALCSH--------PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYE  173 (337)
T ss_pred             -cccceeeeec-cccccC--------CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccC
Confidence             6888665554 344332        2489999999999998888887865 49999999999999999998521    6


Q ss_pred             CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHH
Q 038592          310 GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVL  389 (478)
Q Consensus       310 d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl  389 (478)
                      ++++.+++|||..|++..                            ..++|||||+|.+  |+.+    |+..++.+.++
T Consensus       174 ~~~v~l~iGDG~~fl~~~----------------------------~~~~~dVii~dss--dpvg----pa~~lf~~~~~  219 (337)
T KOG1562|consen  174 GKKVKLLIGDGFLFLEDL----------------------------KENPFDVIITDSS--DPVG----PACALFQKPYF  219 (337)
T ss_pred             CCceEEEeccHHHHHHHh----------------------------ccCCceEEEEecC--Cccc----hHHHHHHHHHH
Confidence            899999999999999874                            3578999999754  4442    67889999999


Q ss_pred             HHHHHccCcCcEEEEEeCCC--CchHHHHHHHHHHHhcCcc-EEE
Q 038592          390 LAARLILSDFGIFVMNVIPP--NRSFYDMLIQEFRDVFQEL-YEI  431 (478)
Q Consensus       390 ~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v-~~~  431 (478)
                      +.+++.|+++|++++.-.|-  +..+.+...+..+.+|+.+ |.+
T Consensus       220 ~~v~~aLk~dgv~~~q~ec~wl~~~~i~e~r~~~~~~f~~t~ya~  264 (337)
T KOG1562|consen  220 GLVLDALKGDGVVCTQGECMWLHLDYIKEGRSFCYVIFDLTAYAI  264 (337)
T ss_pred             HHHHHhhCCCcEEEEecceehHHHHHHHHHHHhHHHhcCccceee
Confidence            99999999999999876554  6777888899999999954 444

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.31  E-value=4.2e-11  Score=116.02  Aligned_cols=127  Identities=25%  Similarity=0.345  Sum_probs=102.7

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCC-CCCCCeEEEE-chHHHHHHHHHhhhcCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGL-EDGEFLQVSV-GDAIEFLEKLARQIVGKNPDS  338 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~-~~d~rl~v~v-~Dg~~~l~~~~~~~~~~~~~~  338 (478)
                      +++||.||.+.|..+.++....  +.+++++|+||+..+.|+++|.- .-++++.++. +|+++.+.+.           
T Consensus        60 ~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~-----------  128 (219)
T COG4122          60 PKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL-----------  128 (219)
T ss_pred             CceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc-----------
Confidence            7899999999999999998875  47999999999999999999853 2467799999 6999998651           


Q ss_pred             CCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE-EeCCCC----c--
Q 038592          339 FGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM-NVIPPN----R--  411 (478)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~-N~~~~~----~--  411 (478)
                                       ....||+||+|++.++.             ++||+.+.++|+|||++++ |+..+.    +  
T Consensus       129 -----------------~~~~fDliFIDadK~~y-------------p~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~  178 (219)
T COG4122         129 -----------------LDGSFDLVFIDADKADY-------------PEYLERALPLLRPGGLIVADNVLFGGRVADPSI  178 (219)
T ss_pred             -----------------cCCCccEEEEeCChhhC-------------HHHHHHHHHHhCCCcEEEEeecccCCccCCccc
Confidence                             35789999999877653             7899999999999999998 876541    2  


Q ss_pred             hHHHHHHHHHHHhcCccEE
Q 038592          412 SFYDMLIQEFRDVFQELYE  430 (478)
Q Consensus       412 ~~~~~v~~~l~~vF~~v~~  430 (478)
                      .-.+.....+++.|..+..
T Consensus       179 ~~~~~~~~~~~~~~~~~~~  197 (219)
T COG4122         179 RDARTQVRGVRDFNDYLLE  197 (219)
T ss_pred             hhHHHHHHHHHHHHHHHhh
Confidence            2345566667777765443

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.31  E-value=1.1e-11  Score=119.36  Aligned_cols=109  Identities=26%  Similarity=0.363  Sum_probs=89.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      +++||.||.+.|+.+.++...+  +.+|+.+|+||+..++|+++|... -+.+++++++||.+++.++...         
T Consensus        46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~---------  116 (205)
T PF01596_consen   46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELAND---------  116 (205)
T ss_dssp             -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHT---------
T ss_pred             CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhc---------
Confidence            7899999999999999999875  589999999999999999998532 2479999999999999987642         


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE-EeCC
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM-NVIP  408 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~-N~~~  408 (478)
                                     ....+||+||+|++...+             .++|+.+.++|++||++++ |+..
T Consensus       117 ---------------~~~~~fD~VFiDa~K~~y-------------~~y~~~~~~ll~~ggvii~DN~l~  158 (205)
T PF01596_consen  117 ---------------GEEGQFDFVFIDADKRNY-------------LEYFEKALPLLRPGGVIIADNVLW  158 (205)
T ss_dssp             ---------------TTTTSEEEEEEESTGGGH-------------HHHHHHHHHHEEEEEEEEEETTTG
T ss_pred             ---------------cCCCceeEEEEcccccch-------------hhHHHHHhhhccCCeEEEEccccc
Confidence                           124589999999865432             6789999999999999998 6654

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.30  E-value=6.8e-12  Score=107.26  Aligned_cols=108  Identities=27%  Similarity=0.294  Sum_probs=83.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhh-CCCEEEEEECChHHHHHHHHhc-CCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQ-LDFEVVGVEMDEVVLRVARQYF-GLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~-~~~~V~~VEiDp~Vl~vA~~~F-g~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.||+|.|.++..+.+. ++.+|++||++|++++.|++.+ .....++++++.+|+ .+...              
T Consensus         2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~--------------   66 (112)
T PF12847_consen    2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPD--------------   66 (112)
T ss_dssp             TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTT--------------
T ss_pred             CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcc--------------
Confidence            469999999999999999984 6899999999999999999998 233468999999999 44211              


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                     ...+||+|+++.+....   +  ++. =...++++.+++.|+|||.++++.
T Consensus        67 ---------------~~~~~D~v~~~~~~~~~---~--~~~-~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   67 ---------------FLEPFDLVICSGFTLHF---L--LPL-DERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             ---------------TSSCEEEEEECSGSGGG---C--CHH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ---------------cCCCCCEEEECCCcccc---c--cch-hHHHHHHHHHHHhcCCCcEEEEEE
Confidence                           34569999996411100   0  010 123678999999999999999874

...

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.19  E-value=2e-10  Score=112.77  Aligned_cols=109  Identities=18%  Similarity=0.210  Sum_probs=87.6

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      +++||.||+|.|+.+.++....  +.+|+++|+|++.+++|+++|... -+++++++.+|+.+++.++...         
T Consensus        69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~---------  139 (234)
T PLN02781         69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNN---------  139 (234)
T ss_pred             CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhC---------
Confidence            7899999999999887777764  479999999999999999988432 2468999999999999875321         


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE-EeCC
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM-NVIP  408 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~-N~~~  408 (478)
                                     ....+||+|++|++...            + .++++.+.++|+|||++++ |+..
T Consensus       140 ---------------~~~~~fD~VfiDa~k~~------------y-~~~~~~~~~ll~~GG~ii~dn~l~  181 (234)
T PLN02781        140 ---------------DPKPEFDFAFVDADKPN------------Y-VHFHEQLLKLVKVGGIIAFDNTLW  181 (234)
T ss_pred             ---------------CCCCCCCEEEECCCHHH------------H-HHHHHHHHHhcCCCeEEEEEcCCc
Confidence                           12467999999976422            1 4789999999999999987 6643

>PLN02476 O-methyltransferase

Probab=99.17  E-value=3.1e-10  Score=113.89  Aligned_cols=110  Identities=25%  Similarity=0.262  Sum_probs=89.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      +++||.||.|.|+.+.++....  +.+|+++|+||+..++|+++|... -.++++++.+|+.++|.++..+         
T Consensus       119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~---------  189 (278)
T PLN02476        119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQN---------  189 (278)
T ss_pred             CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhc---------
Confidence            7899999999999999988764  468999999999999999998422 2368999999999999875321         


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE-EeCCC
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM-NVIPP  409 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~-N~~~~  409 (478)
                                     ....+||+||+|++....             .++++.+.++|++||++++ |+..+
T Consensus       190 ---------------~~~~~FD~VFIDa~K~~Y-------------~~y~e~~l~lL~~GGvIV~DNvL~~  232 (278)
T PLN02476        190 ---------------GEGSSYDFAFVDADKRMY-------------QDYFELLLQLVRVGGVIVMDNVLWH  232 (278)
T ss_pred             ---------------ccCCCCCEEEECCCHHHH-------------HHHHHHHHHhcCCCcEEEEecCccC
Confidence                           123579999999865332             6799999999999999998 67554

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=99.15  E-value=3.2e-10  Score=112.15  Aligned_cols=111  Identities=14%  Similarity=0.178  Sum_probs=90.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      +++||.||.+.|..+.++....  +.+|+++|+||+..++|+++|... -.++++++++|+.++|.++...         
T Consensus        80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~---------  150 (247)
T PLN02589         80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIED---------  150 (247)
T ss_pred             CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhc---------
Confidence            7899999999999998888764  579999999999999999998532 2479999999999999885421         


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE-EeCCC
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM-NVIPP  409 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~-N~~~~  409 (478)
                                    .....+||+||+|++....             ..+|+.+.++|++||++++ |+..+
T Consensus       151 --------------~~~~~~fD~iFiDadK~~Y-------------~~y~~~~l~ll~~GGviv~DNvl~~  194 (247)
T PLN02589        151 --------------GKYHGTFDFIFVDADKDNY-------------INYHKRLIDLVKVGGVIGYDNTLWN  194 (247)
T ss_pred             --------------cccCCcccEEEecCCHHHh-------------HHHHHHHHHhcCCCeEEEEcCCCCC
Confidence                          0013579999999874322             6789999999999999998 77543

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.14  E-value=3.8e-10  Score=97.28  Aligned_cols=114  Identities=25%  Similarity=0.329  Sum_probs=85.6

Q ss_pred             CeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          264 PKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       264 ~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      .+||.+|+|.|.++..+.+....+++++|+||..+++|++.+... ..++++++++|+.++.+.                
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~----------------   65 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEP----------------   65 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHT----------------
T ss_pred             CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhh----------------
Confidence            489999999999998888776689999999999999999988654 357899999999988643                


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVI  407 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~  407 (478)
                                  ....+||+|+.|..-.... +.. ....-....|++.+.++|+|||++++.+.
T Consensus        66 ------------~~~~~~D~Iv~npP~~~~~-~~~-~~~~~~~~~~~~~~~~~L~~gG~~~~~~~  116 (117)
T PF13659_consen   66 ------------LPDGKFDLIVTNPPYGPRS-GDK-AALRRLYSRFLEAAARLLKPGGVLVFITP  116 (117)
T ss_dssp             ------------CTTT-EEEEEE--STTSBT-T-----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ------------ccCceeEEEEECCCCcccc-ccc-hhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence                        2467899999976433211 000 01111457899999999999999997653

...

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.03  E-value=7.1e-09  Score=98.53  Aligned_cols=146  Identities=18%  Similarity=0.114  Sum_probs=99.2

Q ss_pred             hhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEE
Q 038592          237 HVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQV  315 (478)
Q Consensus       237 ~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v  315 (478)
                      -.|++.++..+.+.+. +      ..+.+||.||+|+|.++..+.... +.+|++||+++.+++.|++......-+++++
T Consensus        27 ~~~~~~~~d~l~l~~~-l------~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~   99 (187)
T PRK00107         27 ELWERHILDSLAIAPY-L------PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTV   99 (187)
T ss_pred             HHHHHHHHHHHHHHhh-c------CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEE
Confidence            3566777666655432 1      115799999999999888887654 6899999999999999998764322234999


Q ss_pred             EEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHc
Q 038592          316 SVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLI  395 (478)
Q Consensus       316 ~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~  395 (478)
                      +.+|+.++-                               ...+||+|+++...              .-..+++.+++.
T Consensus       100 ~~~d~~~~~-------------------------------~~~~fDlV~~~~~~--------------~~~~~l~~~~~~  134 (187)
T PRK00107        100 VHGRAEEFG-------------------------------QEEKFDVVTSRAVA--------------SLSDLVELCLPL  134 (187)
T ss_pred             EeccHhhCC-------------------------------CCCCccEEEEcccc--------------CHHHHHHHHHHh
Confidence            999997751                               24579999985310              126799999999


Q ss_pred             cCcCcEEEEEeCCCCchHHHHHHHHHHHhcCccEEEeec
Q 038592          396 LSDFGIFVMNVIPPNRSFYDMLIQEFRDVFQELYEIDVG  434 (478)
Q Consensus       396 L~~~Gilv~N~~~~~~~~~~~v~~~l~~vF~~v~~~~v~  434 (478)
                      |+|||.+++-...........+...+--.-..+|.+.++
T Consensus       135 LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  173 (187)
T PRK00107        135 LKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIELTLP  173 (187)
T ss_pred             cCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEEecC
Confidence            999999997654443332222222222222345666654

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.03  E-value=2.4e-09  Score=92.51  Aligned_cols=103  Identities=20%  Similarity=0.154  Sum_probs=81.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.+|+|.|.++..+.+.. +.+|+++|+++.+++.|++++....-++++++.+|+..++..               
T Consensus        20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~---------------   84 (124)
T TIGR02469        20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALED---------------   84 (124)
T ss_pred             CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChh---------------
Confidence            3599999999999999888875 589999999999999999876433335789999998755422               


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVI  407 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~  407 (478)
                                    ...+||+|+++..           +.  ...++++.+++.|+|||.|++++.
T Consensus        85 --------------~~~~~D~v~~~~~-----------~~--~~~~~l~~~~~~Lk~gG~li~~~~  123 (124)
T TIGR02469        85 --------------SLPEPDRVFIGGS-----------GG--LLQEILEAIWRRLRPGGRIVLNAI  123 (124)
T ss_pred             --------------hcCCCCEEEECCc-----------ch--hHHHHHHHHHHHcCCCCEEEEEec
Confidence                          2357999999531           11  125899999999999999999875

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.01  E-value=2.2e-09  Score=99.97  Aligned_cols=130  Identities=21%  Similarity=0.264  Sum_probs=91.6

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.+|+|.|.++..+.+.. ..+|+++|+++..++.|++.+....-+.++++.+|..+.+                 
T Consensus        32 ~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~-----------------   94 (170)
T PF05175_consen   32 GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL-----------------   94 (170)
T ss_dssp             TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC-----------------
T ss_pred             CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccc-----------------
Confidence            5799999999999999999875 5689999999999999998876443233999999987653                 


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHH
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEF  421 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l  421 (478)
                                    ...+||+|+.+..-..   |.  ....-.-..|++.++++|+|||.+.+-.. +.... +.   .+
T Consensus        95 --------------~~~~fD~Iv~NPP~~~---~~--~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~-~~~~~-~~---~l  150 (170)
T PF05175_consen   95 --------------PDGKFDLIVSNPPFHA---GG--DDGLDLLRDFIEQARRYLKPGGRLFLVIN-SHLGY-ER---LL  150 (170)
T ss_dssp             --------------CTTCEEEEEE---SBT---TS--HCHHHHHHHHHHHHHHHEEEEEEEEEEEE-TTSCH-HH---HH
T ss_pred             --------------cccceeEEEEccchhc---cc--ccchhhHHHHHHHHHHhccCCCEEEEEee-cCCCh-HH---HH
Confidence                          3578999999532100   00  00001348899999999999999876443 32222 22   28


Q ss_pred             HHhcCccEEEee
Q 038592          422 RDVFQELYEIDV  433 (478)
Q Consensus       422 ~~vF~~v~~~~v  433 (478)
                      ++.|..+..+.-
T Consensus       151 ~~~f~~~~~~~~  162 (170)
T PF05175_consen  151 KELFGDVEVVAK  162 (170)
T ss_dssp             HHHHS--EEEEE
T ss_pred             HHhcCCEEEEEE
Confidence            899998776653

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=98.98  E-value=6.4e-09  Score=98.19  Aligned_cols=102  Identities=18%  Similarity=0.119  Sum_probs=78.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.+|+|+|.++..+.... ..+|++||+++.+++.|++...-..-++++++.+|+.++.                 
T Consensus        43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-----------------  105 (181)
T TIGR00138        43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-----------------  105 (181)
T ss_pred             CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-----------------
Confidence            4699999999999998887654 5799999999999999887643222246999999988751                 


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                    ...+||+|+.+..     .         .-.++++.+++.|+|||.+++-..+.
T Consensus       106 --------------~~~~fD~I~s~~~-----~---------~~~~~~~~~~~~LkpgG~lvi~~~~~  145 (181)
T TIGR00138       106 --------------HEEQFDVITSRAL-----A---------SLNVLLELTLNLLKVGGYFLAYKGKK  145 (181)
T ss_pred             --------------ccCCccEEEehhh-----h---------CHHHHHHHHHHhcCCCCEEEEEcCCC
Confidence                          2457999998531     0         12568899999999999999865444

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=98.98  E-value=1.6e-08  Score=99.58  Aligned_cols=149  Identities=25%  Similarity=0.342  Sum_probs=109.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.||+|.|.++.+|.+.. ..+|++||+++++.+.|++...+. ..+|++|+++|.-+|.+..             
T Consensus        45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~-------------  111 (248)
T COG4123          45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKAL-------------  111 (248)
T ss_pred             CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcc-------------
Confidence            6799999999999999999985 599999999999999999988764 4689999999999997652             


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCC-CCCCC---------CChHHHHHHHHHccCcCcEEEEEeCCCC
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTS-APPVE---------FVRKDVLLAARLILSDFGIFVMNVIPPN  410 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s-~Pp~~---------f~~~efl~~~~~~L~~~Gilv~N~~~~~  410 (478)
                                     ...+||+|++.-  +....+-. |+.+.         ..-+++++.++++|+|+|.+.+  +-|.
T Consensus       112 ---------------~~~~fD~Ii~NP--Pyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~--V~r~  172 (248)
T COG4123         112 ---------------VFASFDLIICNP--PYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF--VHRP  172 (248)
T ss_pred             ---------------cccccCEEEeCC--CCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE--EecH
Confidence                           334799999943  11111111 33321         2348899999999999999885  3342


Q ss_pred             chHHHHHHHHHHH-hcCc---cEEEe-ecccceEEEEEE
Q 038592          411 RSFYDMLIQEFRD-VFQE---LYEID-VGNEENFVLIAT  444 (478)
Q Consensus       411 ~~~~~~v~~~l~~-vF~~---v~~~~-v~~~~N~Vl~a~  444 (478)
                       +....++..|++ -|.-   ...++ .+...|.||+..
T Consensus       173 -erl~ei~~~l~~~~~~~k~i~~V~p~~~k~A~~vLv~~  210 (248)
T COG4123         173 -ERLAEIIELLKSYNLEPKRIQFVYPKIGKAANRVLVEA  210 (248)
T ss_pred             -HHHHHHHHHHHhcCCCceEEEEecCCCCCcceEEEEEE
Confidence             334567778887 3442   23333 256789998875

>PLN03075 nicotianamine synthase; Provisional

Probab=98.96  E-value=3.8e-09  Score=106.75  Aligned_cols=149  Identities=16%  Similarity=0.114  Sum_probs=100.1

Q ss_pred             CCCeEEEEeCchh-HHHHHHH-hhC-CCEEEEEECChHHHHHHHHhcC--CCCCCCeEEEEchHHHHHHHHHhhhcCCCC
Q 038592          262 FRPKALCVGVGGG-ALVSFLR-TQL-DFEVVGVEMDEVVLRVARQYFG--LEDGEFLQVSVGDAIEFLEKLARQIVGKNP  336 (478)
Q Consensus       262 ~~~~VLvIGlGgG-~L~~~L~-~~~-~~~V~~VEiDp~Vl~vA~~~Fg--~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~  336 (478)
                      .+++|+.||+|.| ..+..+. .++ +.+++++|+||+.++.|++++.  ..-.++++++.+|+.+...           
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~-----------  191 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE-----------  191 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc-----------
Confidence            3789999999955 4444443 344 6899999999999999999984  2235789999999988521           


Q ss_pred             CCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHH
Q 038592          337 DSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDM  416 (478)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~  416 (478)
                                         ...+||+|++++--     +|..+    .-.+.++.+++.|+|||++++-.......+.--
T Consensus       192 -------------------~l~~FDlVF~~ALi-----~~dk~----~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp  243 (296)
T PLN03075        192 -------------------SLKEYDVVFLAALV-----GMDKE----EKVKVIEHLGKHMAPGALLMLRSAHGARAFLYP  243 (296)
T ss_pred             -------------------ccCCcCEEEEeccc-----ccccc----cHHHHHHHHHHhcCCCcEEEEecccchHhhcCC
Confidence                               23579999998521     11101    237899999999999999998663222222111


Q ss_pred             -HHHHHHHhcCccEEE-eecccceEEEEEEcCCCC
Q 038592          417 -LIQEFRDVFQELYEI-DVGNEENFVLIATGLSIV  449 (478)
Q Consensus       417 -v~~~l~~vF~~v~~~-~v~~~~N~Vl~a~~~~~~  449 (478)
                       +--..-+-|..+..+ +.++-.|.|+|+.+....
T Consensus       244 ~v~~~~~~gf~~~~~~~P~~~v~Nsvi~~r~~~~~  278 (296)
T PLN03075        244 VVDPCDLRGFEVLSVFHPTDEVINSVIIARKPGGP  278 (296)
T ss_pred             CCChhhCCCeEEEEEECCCCCceeeEEEEEeecCC
Confidence             111111255544333 345667999999886543

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=98.94  E-value=1.9e-08  Score=95.73  Aligned_cols=131  Identities=18%  Similarity=0.265  Sum_probs=93.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhh-CCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQ-LDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~-~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      .+++|.||+|.|.++..+.+. ++.+|++||+++.+++.|++......-++++++.+|+.++.....             
T Consensus        17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~-------------   83 (194)
T TIGR00091        17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFF-------------   83 (194)
T ss_pred             CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhC-------------
Confidence            569999999999998877775 468999999999999999876532222479999999999875421             


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHH
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEF  421 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l  421 (478)
                                    .+..+|.|+++..+..+..  ..-...+...+|++.+++.|+|||.|.+...  .......+++.+
T Consensus        84 --------------~~~~~d~v~~~~pdpw~k~--~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td--~~~~~~~~~~~~  145 (194)
T TIGR00091        84 --------------PDGSLSKVFLNFPDPWPKK--RHNKRRITQPHFLKEYANVLKKGGVIHFKTD--NEPLFEDMLKVL  145 (194)
T ss_pred             --------------CCCceeEEEEECCCcCCCC--CccccccCCHHHHHHHHHHhCCCCEEEEEeC--CHHHHHHHHHHH
Confidence                          2457999999753322110  0001235568999999999999999987553  334445555566


Q ss_pred             HHh
Q 038592          422 RDV  424 (478)
Q Consensus       422 ~~v  424 (478)
                      .+.
T Consensus       146 ~~~  148 (194)
T TIGR00091       146 SEN  148 (194)
T ss_pred             HhC
Confidence            554

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=98.91  E-value=2.7e-08  Score=95.30  Aligned_cols=128  Identities=19%  Similarity=0.236  Sum_probs=90.6

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||+|.|.++..+.+.. +.+|++||+++.+++.|++.+....-++++++++|+.+.+...              
T Consensus        41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~--------------  106 (202)
T PRK00121         41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDM--------------  106 (202)
T ss_pred             CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHH--------------
Confidence            5799999999999999888765 5799999999999999998775333367999999995544321              


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCC--CCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHH
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPP--VEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQ  419 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp--~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~  419 (478)
                                   ..+..||+|++..-....    ..+.  .......+++.+++.|+|||.|++-.  ........+++
T Consensus       107 -------------~~~~~~D~V~~~~~~p~~----~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~--~~~~~~~~~~~  167 (202)
T PRK00121        107 -------------FPDGSLDRIYLNFPDPWP----KKRHHKRRLVQPEFLALYARKLKPGGEIHFAT--DWEGYAEYMLE  167 (202)
T ss_pred             -------------cCccccceEEEECCCCCC----CccccccccCCHHHHHHHHHHcCCCCEEEEEc--CCHHHHHHHHH
Confidence                         135679999985321110    0000  11235889999999999999998643  34454555555


Q ss_pred             HHHH
Q 038592          420 EFRD  423 (478)
Q Consensus       420 ~l~~  423 (478)
                      .+++
T Consensus       168 ~~~~  171 (202)
T PRK00121        168 VLSA  171 (202)
T ss_pred             HHHh
Confidence            5544

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=98.84  E-value=4.9e-08  Score=93.03  Aligned_cols=118  Identities=20%  Similarity=0.239  Sum_probs=88.7

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCC-CCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLED-GEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~-d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      ..+||.+|+|+|.++..+....  ..+|++||+++.+++.|++.+.... .++++++.+|+.+++..             
T Consensus        41 ~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~-------------  107 (198)
T PRK00377         41 GDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFT-------------  107 (198)
T ss_pred             cCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhh-------------
Confidence            4689999999999998887654  4699999999999999987753222 35789999999887644             


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHH
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQ  419 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~  419 (478)
                                      ....||+|++.....             .-.++++.+.+.|+|||.+++.+...  +....+..
T Consensus       108 ----------------~~~~~D~V~~~~~~~-------------~~~~~l~~~~~~LkpgG~lv~~~~~~--~~~~~~~~  156 (198)
T PRK00377        108 ----------------INEKFDRIFIGGGSE-------------KLKEIISASWEIIKKGGRIVIDAILL--ETVNNALS  156 (198)
T ss_pred             ----------------cCCCCCEEEECCCcc-------------cHHHHHHHHHHHcCCCcEEEEEeecH--HHHHHHHH
Confidence                            235799999953110             12679999999999999999865533  33456666


Q ss_pred             HHHHh
Q 038592          420 EFRDV  424 (478)
Q Consensus       420 ~l~~v  424 (478)
                      .|++.
T Consensus       157 ~l~~~  161 (198)
T PRK00377        157 ALENI  161 (198)
T ss_pred             HHHHc
Confidence            67554

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=98.84  E-value=3.9e-08  Score=92.66  Aligned_cols=114  Identities=16%  Similarity=0.143  Sum_probs=84.1

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||+|+|.++..+.+.. +.+|+++|+++.+++.|++.+....-++++++.+|+...                  
T Consensus        32 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~------------------   93 (187)
T PRK08287         32 AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE------------------   93 (187)
T ss_pred             CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh------------------
Confidence            5699999999999999888765 689999999999999999865322224699999997422                  


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHH
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEF  421 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l  421 (478)
                                    ...+||+|+++...            . .-.++++.+.+.|+|||.++++......  ...+.+.+
T Consensus        94 --------------~~~~~D~v~~~~~~------------~-~~~~~l~~~~~~Lk~gG~lv~~~~~~~~--~~~~~~~l  144 (187)
T PRK08287         94 --------------LPGKADAIFIGGSG------------G-NLTAIIDWSLAHLHPGGRLVLTFILLEN--LHSALAHL  144 (187)
T ss_pred             --------------cCcCCCEEEECCCc------------c-CHHHHHHHHHHhcCCCeEEEEEEecHhh--HHHHHHHH
Confidence                          13469999985311            0 1267899999999999999998654422  23445555


Q ss_pred             HH
Q 038592          422 RD  423 (478)
Q Consensus       422 ~~  423 (478)
                      ++
T Consensus       145 ~~  146 (187)
T PRK08287        145 EK  146 (187)
T ss_pred             HH
Confidence            55

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.83  E-value=1.3e-07  Score=94.46  Aligned_cols=135  Identities=15%  Similarity=0.148  Sum_probs=99.6

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.+|+|.|+.+..+.+..  ...|+++|+++..++.+++.+....-.+++++.+|+..+-.               
T Consensus        72 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~---------------  136 (264)
T TIGR00446        72 PERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGA---------------  136 (264)
T ss_pred             cCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhh---------------
Confidence            4689999999999998888875  36999999999999999987743322469999999987632               


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCC-CCCC--------C-----ChHHHHHHHHHccCcCcEEEEEe
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSA-PPVE--------F-----VRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~-Pp~~--------f-----~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                     ....||+|++|+-.+..  |+.. -|..        +     .+.++|+.+.+.|+|||.++.-+
T Consensus       137 ---------------~~~~fD~Vl~D~Pcsg~--G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst  199 (264)
T TIGR00446       137 ---------------AVPKFDAILLDAPCSGE--GVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST  199 (264)
T ss_pred             ---------------hccCCCEEEEcCCCCCC--cccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence                           23359999999855421  2211 1111        1     34679999999999999999877


Q ss_pred             CCCCchHHHHHHHHHHHhcCccE
Q 038592          407 IPPNRSFYDMLIQEFRDVFQELY  429 (478)
Q Consensus       407 ~~~~~~~~~~v~~~l~~vF~~v~  429 (478)
                      .+.+.+.-+.+++.+.+.++...
T Consensus       200 cs~~~~Ene~vv~~~l~~~~~~~  222 (264)
T TIGR00446       200 CSLEPEENEAVVDYLLEKRPDVV  222 (264)
T ss_pred             CCCChHHHHHHHHHHHHhCCCcE
Confidence            66666555677888877777543

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=98.81  E-value=1.3e-08  Score=92.58  Aligned_cols=110  Identities=23%  Similarity=0.318  Sum_probs=82.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhh--CCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQ--LDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~--~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.+|+|.|.+...|.+.  ++.++++||+++++++.|++.+.-..-++++++++|..+ +.+              
T Consensus         4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~--------------   68 (152)
T PF13847_consen    4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQ--------------   68 (152)
T ss_dssp             TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCG--------------
T ss_pred             CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhc-ccc--------------
Confidence            579999999999999999843  368999999999999999996532222389999999988 422              


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCCh-HHHHHHHHHccCcCcEEEEEeCCCCch
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVR-KDVLLAARLILSDFGIFVMNVIPPNRS  412 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~-~efl~~~~~~L~~~Gilv~N~~~~~~~  412 (478)
                                    .-..+||+|+....-           ..+.+ ..+++.+.+.|+++|++++.......+
T Consensus        69 --------------~~~~~~D~I~~~~~l-----------~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~~~~  116 (152)
T PF13847_consen   69 --------------ELEEKFDIIISNGVL-----------HHFPDPEKVLKNIIRLLKPGGILIISDPNHNDE  116 (152)
T ss_dssp             --------------CSSTTEEEEEEESTG-----------GGTSHHHHHHHHHHHHEEEEEEEEEEEEEHSHH
T ss_pred             --------------ccCCCeeEEEEcCch-----------hhccCHHHHHHHHHHHcCCCcEEEEEECChHHH
Confidence                          001689999996311           12222 579999999999999999876653333

...

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=1.3e-08  Score=97.67  Aligned_cols=117  Identities=21%  Similarity=0.176  Sum_probs=87.1

Q ss_pred             cchhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeE
Q 038592          235 LVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQ  314 (478)
Q Consensus       235 L~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~  314 (478)
                      +.-+|..+++..++-..          ...+||.||+|.|+.+..|.+..+ +|..||++++..+.|++.|....-.++.
T Consensus        55 is~P~~vA~m~~~L~~~----------~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~  123 (209)
T COG2518          55 ISAPHMVARMLQLLELK----------PGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVT  123 (209)
T ss_pred             ecCcHHHHHHHHHhCCC----------CCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceE
Confidence            45566666555443222          257999999999999988887645 9999999999999999987544445599


Q ss_pred             EEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 038592          315 VSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARL  394 (478)
Q Consensus       315 v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~  394 (478)
                      ++++||..-..                              ....||.|++.+-..       ..|.         .+.+
T Consensus       124 v~~gDG~~G~~------------------------------~~aPyD~I~Vtaaa~-------~vP~---------~Ll~  157 (209)
T COG2518         124 VRHGDGSKGWP------------------------------EEAPYDRIIVTAAAP-------EVPE---------ALLD  157 (209)
T ss_pred             EEECCcccCCC------------------------------CCCCcCEEEEeeccC-------CCCH---------HHHH
Confidence            99999987642                              357899999964322       2343         3677


Q ss_pred             ccCcCcEEEEEeCC
Q 038592          395 ILSDFGIFVMNVIP  408 (478)
Q Consensus       395 ~L~~~Gilv~N~~~  408 (478)
                      .|++||.+++=+..
T Consensus       158 QL~~gGrlv~PvG~  171 (209)
T COG2518         158 QLKPGGRLVIPVGS  171 (209)
T ss_pred             hcccCCEEEEEEcc
Confidence            89999999987773

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=98.81  E-value=2.1e-08  Score=96.76  Aligned_cols=100  Identities=26%  Similarity=0.177  Sum_probs=77.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.||+|.|.++..|.+..  ..+|++||+++.+++.|++.+....-++++++.+|+.+...               
T Consensus        78 ~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~---------------  142 (215)
T TIGR00080        78 GMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE---------------  142 (215)
T ss_pred             cCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc---------------
Confidence            4699999999999999888875  35899999999999999988754333579999999976531               


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCC
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIP  408 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~  408 (478)
                                     ...+||+|+++...           .     ...+.+.+.|+|||.+++.+..
T Consensus       143 ---------------~~~~fD~Ii~~~~~-----------~-----~~~~~~~~~L~~gG~lv~~~~~  179 (215)
T TIGR00080       143 ---------------PLAPYDRIYVTAAG-----------P-----KIPEALIDQLKEGGILVMPVGE  179 (215)
T ss_pred             ---------------ccCCCCEEEEcCCc-----------c-----cccHHHHHhcCcCcEEEEEEcC
Confidence                           23579999996421           1     1234578899999999987654

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.81  E-value=3.3e-08  Score=97.13  Aligned_cols=118  Identities=23%  Similarity=0.369  Sum_probs=96.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCC-CCCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGL-EDGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~-~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      ..+|+..|.|+|+|+.+|....  ..+|+.+|++++..+.|++.|.. .-++++++..+|..+.+.              
T Consensus        95 g~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~--------------  160 (256)
T COG2519          95 GSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID--------------  160 (256)
T ss_pred             CCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc--------------
Confidence            4699999999999999999875  37999999999999999987642 224568999999998853              


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHH
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQ  419 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~  419 (478)
                                       ...||+|++|+-+         |      .++++++++.|+|||.+++-+.+-  +..+.++.
T Consensus       161 -----------------~~~vDav~LDmp~---------P------W~~le~~~~~Lkpgg~~~~y~P~v--eQv~kt~~  206 (256)
T COG2519         161 -----------------EEDVDAVFLDLPD---------P------WNVLEHVSDALKPGGVVVVYSPTV--EQVEKTVE  206 (256)
T ss_pred             -----------------ccccCEEEEcCCC---------h------HHHHHHHHHHhCCCcEEEEEcCCH--HHHHHHHH
Confidence                             2379999998733         1      679999999999999999766554  44667788


Q ss_pred             HHHHh-cCcc
Q 038592          420 EFRDV-FQEL  428 (478)
Q Consensus       420 ~l~~v-F~~v  428 (478)
                      .|++. |-++
T Consensus       207 ~l~~~g~~~i  216 (256)
T COG2519         207 ALRERGFVDI  216 (256)
T ss_pred             HHHhcCccch
Confidence            88888 7643

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.81  E-value=1.9e-08  Score=97.32  Aligned_cols=134  Identities=21%  Similarity=0.183  Sum_probs=105.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhc--CCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYF--GLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~F--g~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.-..|-|+.+....+.-..+|..||-||.|+++|+-.-  .-..+.+++++.||+.+++++.             
T Consensus       135 G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~-------------  201 (287)
T COG2521         135 GERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDF-------------  201 (287)
T ss_pred             CCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcC-------------
Confidence            5699999999999887766653459999999999999997431  1112458999999999999773             


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC-----CchHHH
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP-----NRSFYD  415 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~-----~~~~~~  415 (478)
                                     .+..||+||-|-.-       -+-+.+|++.+|++.+++.|++||-++-.+..+     ..+..+
T Consensus       202 ---------------~D~sfDaIiHDPPR-------fS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~  259 (287)
T COG2521         202 ---------------DDESFDAIIHDPPR-------FSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPK  259 (287)
T ss_pred             ---------------CccccceEeeCCCc-------cchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhH
Confidence                           57789999997411       113457999999999999999999999888765     456788


Q ss_pred             HHHHHHHHh-cCccEEE
Q 038592          416 MLIQEFRDV-FQELYEI  431 (478)
Q Consensus       416 ~v~~~l~~v-F~~v~~~  431 (478)
                      .+.++|+++ |..|-..
T Consensus       260 gVa~RLr~vGF~~v~~~  276 (287)
T COG2521         260 GVAERLRRVGFEVVKKV  276 (287)
T ss_pred             HHHHHHHhcCceeeeee
Confidence            999999998 7655433

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=98.80  E-value=3.3e-08  Score=96.48  Aligned_cols=108  Identities=20%  Similarity=0.246  Sum_probs=76.6

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.||||||.|+..+++. +.+|+++|+++..+++|+.|-... .-.+........+..    .             
T Consensus        60 g~~vLDvGCGgG~Lse~mAr~-Ga~VtgiD~se~~I~~Ak~ha~e~-gv~i~y~~~~~edl~----~-------------  120 (243)
T COG2227          60 GLRVLDVGCGGGILSEPLARL-GASVTGIDASEKPIEVAKLHALES-GVNIDYRQATVEDLA----S-------------  120 (243)
T ss_pred             CCeEEEecCCccHhhHHHHHC-CCeeEEecCChHHHHHHHHhhhhc-cccccchhhhHHHHH----h-------------
Confidence            579999999999999998875 799999999999999999885321 111222223333222    1             


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCch
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRS  412 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~  412 (478)
                                   ..++||+|++=    +..-.+.      --..|+++|.++++|||++++-.+.|+..
T Consensus       121 -------------~~~~FDvV~cm----EVlEHv~------dp~~~~~~c~~lvkP~G~lf~STinrt~k  167 (243)
T COG2227         121 -------------AGGQFDVVTCM----EVLEHVP------DPESFLRACAKLVKPGGILFLSTINRTLK  167 (243)
T ss_pred             -------------cCCCccEEEEh----hHHHccC------CHHHHHHHHHHHcCCCcEEEEeccccCHH
Confidence                         34789999981    1111111      12569999999999999999988887543

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.80  E-value=3e-08  Score=95.81  Aligned_cols=99  Identities=24%  Similarity=0.208  Sum_probs=76.6

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.||+|.|+++..+.+..  +.+|++||+++.+++.|++.+....-++++++.+|+.+...               
T Consensus        77 g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~---------------  141 (212)
T PRK13942         77 GMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE---------------  141 (212)
T ss_pred             cCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC---------------
Confidence            4699999999999998888775  36999999999999999988753333579999999875421               


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeC
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVI  407 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~  407 (478)
                                     ....||+|+++....                +..+.+.+.|+|||.+++.+.
T Consensus       142 ---------------~~~~fD~I~~~~~~~----------------~~~~~l~~~LkpgG~lvi~~~  177 (212)
T PRK13942        142 ---------------ENAPYDRIYVTAAGP----------------DIPKPLIEQLKDGGIMVIPVG  177 (212)
T ss_pred             ---------------cCCCcCEEEECCCcc----------------cchHHHHHhhCCCcEEEEEEc
Confidence                           346799999964221                122456778999999998764

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.80  E-value=4.6e-08  Score=96.76  Aligned_cols=108  Identities=17%  Similarity=0.166  Sum_probs=82.6

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      +.+||.+|+|.|.++..+.+. +.+|++||+++++++.|++...-. ..++++++.+|..+....               
T Consensus        45 ~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~---------------  108 (255)
T PRK11036         45 PLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQH---------------  108 (255)
T ss_pred             CCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhh---------------
Confidence            579999999999999988875 689999999999999999876422 246799999999886321               


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPN  410 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~  410 (478)
                                    ....||+|++..    ....+.      -...+++.+.+.|+|||.+++-..+.+
T Consensus       109 --------------~~~~fD~V~~~~----vl~~~~------~~~~~l~~~~~~LkpgG~l~i~~~n~~  153 (255)
T PRK11036        109 --------------LETPVDLILFHA----VLEWVA------DPKSVLQTLWSVLRPGGALSLMFYNAN  153 (255)
T ss_pred             --------------cCCCCCEEEehh----HHHhhC------CHHHHHHHHHHHcCCCeEEEEEEECcc
Confidence                          346799999831    100111      125789999999999999987655543

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.77  E-value=1.4e-07  Score=93.73  Aligned_cols=148  Identities=19%  Similarity=0.204  Sum_probs=96.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      +.+||.+|+|.|.++..+.... ..+++++|+++.+++.|++.+......+++++.+|..+.+                 
T Consensus       109 ~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~-----------------  171 (275)
T PRK09328        109 PLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPL-----------------  171 (275)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcC-----------------
Confidence            5689999999999999988876 6899999999999999999876223467999999984321                 


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCC--CC------CCCCCCCC--------hHHHHHHHHHccCcCcEEEEE
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARN--GT------SAPPVEFV--------RKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~--g~------s~Pp~~f~--------~~efl~~~~~~L~~~Gilv~N  405 (478)
                                    ...+||+|+.+..-.....  .+      ..|...++        -..+++.+.+.|++||.+++.
T Consensus       172 --------------~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e  237 (275)
T PRK09328        172 --------------PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE  237 (275)
T ss_pred             --------------CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence                          2357999999642111000  00      01111121        256888889999999999997


Q ss_pred             eCCCCchHHHHHHHHHHH-hcCccEEEeecccceEEEEEE
Q 038592          406 VIPPNRSFYDMLIQEFRD-VFQELYEIDVGNEENFVLIAT  444 (478)
Q Consensus       406 ~~~~~~~~~~~v~~~l~~-vF~~v~~~~v~~~~N~Vl~a~  444 (478)
                      ......   ..+.+.+++ -|..+..+.--.+..+++++.
T Consensus       238 ~g~~~~---~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~  274 (275)
T PRK09328        238 IGYDQG---EAVRALLAAAGFADVETRKDLAGRDRVVLGR  274 (275)
T ss_pred             ECchHH---HHHHHHHHhCCCceeEEecCCCCCceEEEEE
Confidence            754432   233334433 255444333222345666553

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=98.75  E-value=1.4e-07  Score=93.03  Aligned_cols=100  Identities=15%  Similarity=0.205  Sum_probs=79.6

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||+|.|.++..+.+.. +.+|++||+++.+++.|++.+     ++++++.+|+.++.                 
T Consensus        32 ~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~~-----------------   89 (258)
T PRK01683         32 PRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----PDCQFVEADIASWQ-----------------   89 (258)
T ss_pred             CCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhccC-----------------
Confidence            5799999999999998888765 689999999999999999875     35889999987652                 


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIP  408 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~  408 (478)
                                    ...+||+|+....-  .  .+   +   -...+++.+++.|+|||.+++.+..
T Consensus        90 --------------~~~~fD~v~~~~~l--~--~~---~---d~~~~l~~~~~~LkpgG~~~~~~~~  132 (258)
T PRK01683         90 --------------PPQALDLIFANASL--Q--WL---P---DHLELFPRLVSLLAPGGVLAVQMPD  132 (258)
T ss_pred             --------------CCCCccEEEEccCh--h--hC---C---CHHHHHHHHHHhcCCCcEEEEECCC
Confidence                          23579999984211  0  01   1   2368999999999999999997643

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=98.74  E-value=1.9e-07  Score=98.45  Aligned_cols=112  Identities=21%  Similarity=0.193  Sum_probs=80.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCC-C-CCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLED-G-EFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~-d-~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      .++||.+|+|+|+++..+......+|++||+++..++.|++.+.+.. + .+++++.+|+.+++++...           
T Consensus       221 g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~-----------  289 (396)
T PRK15128        221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRD-----------  289 (396)
T ss_pred             CCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHh-----------
Confidence            47999999999998765443323599999999999999999986532 2 4799999999999976432           


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCC-----hHHHHHHHHHccCcCcEEEEEe
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFV-----RKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~-----~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                     ...+||+||+|...-..      ....+.     =.+++..+.++|++||++++-.
T Consensus       290 ---------------~~~~fDlVilDPP~f~~------~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s  339 (396)
T PRK15128        290 ---------------RGEKFDVIVMDPPKFVE------NKSQLMGACRGYKDINMLAIQLLNPGGILLTFS  339 (396)
T ss_pred             ---------------cCCCCCEEEECCCCCCC------ChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence                           34579999998432110      000111     1345567789999999998633

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=98.74  E-value=1.3e-07  Score=92.32  Aligned_cols=115  Identities=21%  Similarity=0.199  Sum_probs=82.1

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      +.+||.+|+|+|.++..+.+.. ..+++++|+++.+++.|++.+....-++++++.+|+.+.+                 
T Consensus        88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~-----------------  150 (251)
T TIGR03534        88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPL-----------------  150 (251)
T ss_pred             CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccC-----------------
Confidence            4689999999999998888875 6799999999999999998764322347999999987642                 


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC-----------------ChHHHHHHHHHccCcCcEEEE
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF-----------------VRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f-----------------~~~efl~~~~~~L~~~Gilv~  404 (478)
                                    ...+||+|+.+.--.... .+...+...                 .-..+++.+.+.|++||.+++
T Consensus       151 --------------~~~~fD~Vi~npPy~~~~-~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~  215 (251)
T TIGR03534       151 --------------PGGKFDLIVSNPPYIPEA-DIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLL  215 (251)
T ss_pred             --------------cCCceeEEEECCCCCchh-hhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEE
Confidence                          346799999964211000 000000010                 114788999999999999999


Q ss_pred             EeCCC
Q 038592          405 NVIPP  409 (478)
Q Consensus       405 N~~~~  409 (478)
                      .....
T Consensus       216 ~~~~~  220 (251)
T TIGR03534       216 EIGYD  220 (251)
T ss_pred             EECcc
Confidence            77543

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=98.74  E-value=6e-08  Score=99.59  Aligned_cols=107  Identities=18%  Similarity=0.217  Sum_probs=82.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||+|+|.++..|.+ .+.+|++||+++++++.|++++... ...+++++++|+.++-.                
T Consensus       132 g~~ILDIGCG~G~~s~~La~-~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~----------------  194 (322)
T PLN02396        132 GLKFIDIGCGGGLLSEPLAR-MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD----------------  194 (322)
T ss_pred             CCEEEEeeCCCCHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh----------------
Confidence            46899999999999988875 4789999999999999999987542 23579999999876521                


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPN  410 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~  410 (478)
                                    .+.+||+|+.-  .  ....+.      -...|++.+++.|+|||.+++....+.
T Consensus       195 --------------~~~~FD~Vi~~--~--vLeHv~------d~~~~L~~l~r~LkPGG~liist~nr~  239 (322)
T PLN02396        195 --------------EGRKFDAVLSL--E--VIEHVA------NPAEFCKSLSALTIPNGATVLSTINRT  239 (322)
T ss_pred             --------------ccCCCCEEEEh--h--HHHhcC------CHHHHHHHHHHHcCCCcEEEEEECCcC
Confidence                          35679999981  1  110111      126899999999999999998876653

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=98.74  E-value=2.7e-07  Score=86.26  Aligned_cols=126  Identities=17%  Similarity=0.135  Sum_probs=85.1

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      +.+||.+|+|.|.++..+.+... +|+++|++|.+++.|++.+... ..+++++.+|..+.                   
T Consensus        20 ~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~d~~~~-------------------   78 (179)
T TIGR00537        20 PDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLN-NVGLDVVMTDLFKG-------------------   78 (179)
T ss_pred             CCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHc-CCceEEEEcccccc-------------------
Confidence            46899999999999988887644 9999999999999999887532 23578888897553                   


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCC-----------CCCChHHHHHHHHHccCcCcEEEEEeCCCCc
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPP-----------VEFVRKDVLLAARLILSDFGIFVMNVIPPNR  411 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp-----------~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~  411 (478)
                                   ...+||+|+.+..-..........+           ..-.-..|++.+.+.|+|||.+++...+...
T Consensus        79 -------------~~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~  145 (179)
T TIGR00537        79 -------------VRGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNG  145 (179)
T ss_pred             -------------cCCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCC
Confidence                         2347999998642110000000000           0001367899999999999999886654431


Q ss_pred             hHHHHHHHHHHHh
Q 038592          412 SFYDMLIQEFRDV  424 (478)
Q Consensus       412 ~~~~~v~~~l~~v  424 (478)
                        ...++..|++.
T Consensus       146 --~~~~~~~l~~~  156 (179)
T TIGR00537       146 --EPDTFDKLDER  156 (179)
T ss_pred             --hHHHHHHHHhC
Confidence              23455666554

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.74  E-value=2.2e-07  Score=99.12  Aligned_cols=139  Identities=16%  Similarity=0.218  Sum_probs=100.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.+|+|.|+.+..+....  +.+|+++|+++..++.+++.+.-..-.+++++.+|+..+-..              
T Consensus       238 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~--------------  303 (431)
T PRK14903        238 GLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEY--------------  303 (431)
T ss_pred             CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhh--------------
Confidence            4689999999999998888876  479999999999999999776422223589999999876321              


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCC-CCCCCC-------------ChHHHHHHHHHccCcCcEEEEEe
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTS-APPVEF-------------VRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s-~Pp~~f-------------~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                     ...+||.|++|+..+..  |+. --|...             .+.+.|..+.+.|+|||.+++-+
T Consensus       304 ---------------~~~~fD~Vl~DaPCsg~--G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT  366 (431)
T PRK14903        304 ---------------VQDTFDRILVDAPCTSL--GTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYST  366 (431)
T ss_pred             ---------------hhccCCEEEECCCCCCC--ccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence                           23469999999865422  321 112110             35778999999999999999888


Q ss_pred             CCCCchHHHHHHHHHHHhcCccEEEe
Q 038592          407 IPPNRSFYDMLIQEFRDVFQELYEID  432 (478)
Q Consensus       407 ~~~~~~~~~~v~~~l~~vF~~v~~~~  432 (478)
                      .+..++--..++..+-+-++.....+
T Consensus       367 Cs~~~eEne~vv~~fl~~~~~~~~~~  392 (431)
T PRK14903        367 CTVTKEENTEVVKRFVYEQKDAEVID  392 (431)
T ss_pred             CCCChhhCHHHHHHHHHhCCCcEEec
Confidence            77765555566666666677654333

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=98.73  E-value=2.5e-07  Score=96.94  Aligned_cols=127  Identities=13%  Similarity=0.145  Sum_probs=90.7

Q ss_pred             CeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCC---CCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          264 PKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLE---DGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       264 ~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~---~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      .+||.+|+|.|.++..+.+.. ..+|++||+++.+++.|++.+...   ...+++++.+|+.+.+               
T Consensus       230 ~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~---------------  294 (378)
T PRK15001        230 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV---------------  294 (378)
T ss_pred             CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccC---------------
Confidence            589999999999999888764 689999999999999999876321   1247899999986542               


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHH
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQ  419 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~  419 (478)
                                      ...+||+|+++..  ... +.. .... ....++..++++|+|||.|.+-. .+...    ...
T Consensus       295 ----------------~~~~fDlIlsNPP--fh~-~~~-~~~~-ia~~l~~~a~~~LkpGG~L~iV~-nr~l~----y~~  348 (378)
T PRK15001        295 ----------------EPFRFNAVLCNPP--FHQ-QHA-LTDN-VAWEMFHHARRCLKINGELYIVA-NRHLD----YFH  348 (378)
T ss_pred             ----------------CCCCEEEEEECcC--ccc-Ccc-CCHH-HHHHHHHHHHHhcccCCEEEEEE-ecCcC----HHH
Confidence                            2457999999521  100 100 0111 24689999999999999887643 33333    245


Q ss_pred             HHHHhcCccEEE
Q 038592          420 EFRDVFQELYEI  431 (478)
Q Consensus       420 ~l~~vF~~v~~~  431 (478)
                      .|++.|..+..+
T Consensus       349 ~L~~~fg~~~~v  360 (378)
T PRK15001        349 KLKKIFGNCTTI  360 (378)
T ss_pred             HHHHHcCCceEE
Confidence            677899877654

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=98.73  E-value=1.4e-07  Score=93.26  Aligned_cols=98  Identities=16%  Similarity=0.211  Sum_probs=77.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      +.+||.||+|.|.++..|.+.. +.+|+++|+++.+++.|++.       +++++++|+.++.                 
T Consensus        30 ~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~-----------------   85 (255)
T PRK14103         30 ARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------GVDARTGDVRDWK-----------------   85 (255)
T ss_pred             CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCC-----------------
Confidence            5799999999999999998875 67999999999999999863       4788999987652                 


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIP  408 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~  408 (478)
                                    ...+||+|+....-    .  .. |   -...+++.+++.|+|||.+++.+..
T Consensus        86 --------------~~~~fD~v~~~~~l----~--~~-~---d~~~~l~~~~~~LkpgG~l~~~~~~  128 (255)
T PRK14103         86 --------------PKPDTDVVVSNAAL----Q--WV-P---EHADLLVRWVDELAPGSWIAVQVPG  128 (255)
T ss_pred             --------------CCCCceEEEEehhh----h--hC-C---CHHHHHHHHHHhCCCCcEEEEEcCC
Confidence                          24579999994211    0  01 1   1277999999999999999987653

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=98.72  E-value=8.8e-08  Score=94.49  Aligned_cols=103  Identities=14%  Similarity=0.172  Sum_probs=76.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhh---CCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQ---LDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDS  338 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~---~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~  338 (478)
                      ..+||.||+|+|.++..+.+.   ++.+|++||+++.+++.|++.+... ...+++++.+|..++               
T Consensus        57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~---------------  121 (247)
T PRK15451         57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI---------------  121 (247)
T ss_pred             CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhC---------------
Confidence            468999999999988777763   4689999999999999999887432 245899999997654               


Q ss_pred             CCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592          339 FGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                       +...||+|++-..    .  ...++.  ....+++.+++.|+|||.|++-
T Consensus       122 -----------------~~~~~D~vv~~~~----l--~~l~~~--~~~~~l~~i~~~LkpGG~l~l~  163 (247)
T PRK15451        122 -----------------AIENASMVVLNFT----L--QFLEPS--ERQALLDKIYQGLNPGGALVLS  163 (247)
T ss_pred             -----------------CCCCCCEEehhhH----H--HhCCHH--HHHHHHHHHHHhcCCCCEEEEE
Confidence                             2234898876210    0  001111  1367999999999999999873

>PRK07402 precorrin-6B methylase; Provisional

Probab=98.72  E-value=1.5e-07  Score=89.38  Aligned_cols=104  Identities=20%  Similarity=0.161  Sum_probs=79.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.+|+|.|.++..+.+.. +.+|++||+||.+++.|++.+....-++++++.+|+.+.+..               
T Consensus        41 ~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~---------------  105 (196)
T PRK07402         41 DSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQ---------------  105 (196)
T ss_pred             CCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhh---------------
Confidence            4689999999999998887654 689999999999999999875322224699999999775432               


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                    ....+|.|++|..  .            .-..+++.+.+.|+|||.++++....
T Consensus       106 --------------~~~~~d~v~~~~~--~------------~~~~~l~~~~~~LkpgG~li~~~~~~  145 (196)
T PRK07402        106 --------------LAPAPDRVCIEGG--R------------PIKEILQAVWQYLKPGGRLVATASSL  145 (196)
T ss_pred             --------------CCCCCCEEEEECC--c------------CHHHHHHHHHHhcCCCeEEEEEeecH
Confidence                          1234678888631  1            12679999999999999999987654

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=98.72  E-value=7.1e-07  Score=86.40  Aligned_cols=102  Identities=24%  Similarity=0.253  Sum_probs=78.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.+|+|.|.++..+.+..  ..+|+++|+++.+++.|++.+.-..-++++++.+|+.++-                
T Consensus        46 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------------  109 (231)
T TIGR02752        46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP----------------  109 (231)
T ss_pred             CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC----------------
Confidence            4699999999999998888764  4799999999999999998764222357999999987641                


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                    ....+||+|++...-.    .+   +   ....+++.+.+.|+|||.+++
T Consensus       110 --------------~~~~~fD~V~~~~~l~----~~---~---~~~~~l~~~~~~Lk~gG~l~~  149 (231)
T TIGR02752       110 --------------FDDNSFDYVTIGFGLR----NV---P---DYMQVLREMYRVVKPGGKVVC  149 (231)
T ss_pred             --------------CCCCCccEEEEecccc----cC---C---CHHHHHHHHHHHcCcCeEEEE
Confidence                          1356799999852110    11   1   125789999999999999986

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=98.71  E-value=3.3e-07  Score=92.51  Aligned_cols=115  Identities=20%  Similarity=0.228  Sum_probs=83.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      +.+||.+|+|.|+++..+.+.. +.+|++||+++.+++.|++.+... -+.+++++.+|..+.+                
T Consensus       122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~----------------  185 (284)
T TIGR03533       122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAAL----------------  185 (284)
T ss_pred             CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc----------------
Confidence            4689999999999999998875 689999999999999999886422 1357999999987653                


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCC--CCCC-----CCCCCCC--------ChHHHHHHHHHccCcCcEEEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDA--RNGT-----SAPPVEF--------VRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~--~~g~-----s~Pp~~f--------~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                     ...+||+|+.|..-...  ...+     ..|...+        .-..+++.+.+.|+|||.+++.
T Consensus       186 ---------------~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e  250 (284)
T TIGR03533       186 ---------------PGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE  250 (284)
T ss_pred             ---------------CCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence                           23469999997311100  0000     0111111        1256889999999999999998


Q ss_pred             eCC
Q 038592          406 VIP  408 (478)
Q Consensus       406 ~~~  408 (478)
                      +..
T Consensus       251 ~g~  253 (284)
T TIGR03533       251 VGN  253 (284)
T ss_pred             ECc
Confidence            875

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=98.70  E-value=8.5e-08  Score=91.50  Aligned_cols=102  Identities=16%  Similarity=0.190  Sum_probs=75.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      +.+||.+|+|.|.++.+|.+. +.+|++||+++++++.|++......-.+++++++|..++-                  
T Consensus        31 ~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~------------------   91 (197)
T PRK11207         31 PGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLT------------------   91 (197)
T ss_pred             CCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCC------------------
Confidence            579999999999999999875 6799999999999999998764332345888888876541                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                   ...+||+|+.-..    .  ...++.  ....+++.+++.|+|||.+++
T Consensus        92 -------------~~~~fD~I~~~~~----~--~~~~~~--~~~~~l~~i~~~LkpgG~~~~  132 (197)
T PRK11207         92 -------------FDGEYDFILSTVV----L--MFLEAK--TIPGLIANMQRCTKPGGYNLI  132 (197)
T ss_pred             -------------cCCCcCEEEEecc----h--hhCCHH--HHHHHHHHHHHHcCCCcEEEE
Confidence                         2346999997210    0  001121  236899999999999998543

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.70  E-value=4.5e-07  Score=92.62  Aligned_cols=143  Identities=19%  Similarity=0.252  Sum_probs=95.5

Q ss_pred             CeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          264 PKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       264 ~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      .+||.+|+|.|+++..+.... +.+|+++|+++.+++.|++..... ...+++++.+|..+.+                 
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l-----------------  197 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAAL-----------------  197 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhC-----------------
Confidence            689999999999999888775 689999999999999999886432 2357999999987653                 


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCC--CCC-----CCCCCCCC--------ChHHHHHHHHHccCcCcEEEEEe
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDA--RNG-----TSAPPVEF--------VRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~--~~g-----~s~Pp~~f--------~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                    ...+||+|+.|..-...  ...     ...|...+        .-..+++.+.+.|+|||.+++.+
T Consensus       198 --------------~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~  263 (307)
T PRK11805        198 --------------PGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV  263 (307)
T ss_pred             --------------CCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence                          23469999996311000  000     01122211        12578899999999999999987


Q ss_pred             CCCCchHHHHHHHHHHHhcCc--cEEEeecccceEEEEEEc
Q 038592          407 IPPNRSFYDMLIQEFRDVFQE--LYEIDVGNEENFVLIATG  445 (478)
Q Consensus       407 ~~~~~~~~~~v~~~l~~vF~~--v~~~~v~~~~N~Vl~a~~  445 (478)
                      ... ..   .    +.+.|+.  ..+.......-.++++++
T Consensus       264 g~~-~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (307)
T PRK11805        264 GNS-RV---H----LEEAYPDVPFTWLEFENGGDGVFLLTR  296 (307)
T ss_pred             CcC-HH---H----HHHHHhhCCCEEEEecCCCceEEEEEH
Confidence            654 21   2    2233432  223444445556666663

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.69  E-value=1.1e-07  Score=91.39  Aligned_cols=99  Identities=26%  Similarity=0.210  Sum_probs=76.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      ..+||.||+|.|.++..+.+..  ..+|+++|+++.+++.|++.+... ...+++++.+|+.+.+.              
T Consensus        73 ~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~--------------  138 (205)
T PRK13944         73 GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE--------------  138 (205)
T ss_pred             CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc--------------
Confidence            3699999999999998888765  369999999999999999876422 23469999999976531              


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeC
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVI  407 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~  407 (478)
                                      ...+||+|+++...                ..+.+.+.+.|+|||.+++.+.
T Consensus       139 ----------------~~~~fD~Ii~~~~~----------------~~~~~~l~~~L~~gG~lvi~~~  174 (205)
T PRK13944        139 ----------------KHAPFDAIIVTAAA----------------STIPSALVRQLKDGGVLVIPVE  174 (205)
T ss_pred             ----------------cCCCccEEEEccCc----------------chhhHHHHHhcCcCcEEEEEEc
Confidence                            23579999996421                1123467789999999998764

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=98.69  E-value=2.2e-07  Score=89.25  Aligned_cols=105  Identities=19%  Similarity=0.181  Sum_probs=77.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.+|+|.|+++..+......+|++||+|+..++.|++.+....-.+++++.+|+.+++..                
T Consensus        54 ~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~----------------  117 (199)
T PRK10909         54 DARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQ----------------  117 (199)
T ss_pred             CCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhh----------------
Confidence            3699999999999997544333479999999999999999876433224799999999998743                


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCC-CCCChHHHHHHHHHc--cCcCcEEEEEeCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPP-VEFVRKDVLLAARLI--LSDFGIFVMNVIP  408 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp-~~f~~~efl~~~~~~--L~~~Gilv~N~~~  408 (478)
                                   ....||+|++|            || ..=+..+.++.+...  |+++|++++-...
T Consensus       118 -------------~~~~fDlV~~D------------PPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~  161 (199)
T PRK10909        118 -------------PGTPHNVVFVD------------PPFRKGLLEETINLLEDNGWLADEALIYVESEV  161 (199)
T ss_pred             -------------cCCCceEEEEC------------CCCCCChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence                         23469999997            33 111345566766664  7899998875443

>TIGR00740 methyltransferase, putative

Probab=98.67  E-value=3.5e-07  Score=89.50  Aligned_cols=103  Identities=15%  Similarity=0.214  Sum_probs=77.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhh---CCCEEEEEECChHHHHHHHHhcCC-CCCCCeEEEEchHHHHHHHHHhhhcCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQ---LDFEVVGVEMDEVVLRVARQYFGL-EDGEFLQVSVGDAIEFLEKLARQIVGKNPDS  338 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~---~~~~V~~VEiDp~Vl~vA~~~Fg~-~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~  338 (478)
                      ..+||.||+|.|.++..+.+.   ++.++++||+++.+++.|++.+.- ....+++++.+|..++               
T Consensus        54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~---------------  118 (239)
T TIGR00740        54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV---------------  118 (239)
T ss_pred             CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhC---------------
Confidence            468999999999998888775   368999999999999999988653 2345799999999865               


Q ss_pred             CCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592          339 FGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                       ....+|+|++...    . . .+++.  --..+++.+++.|+|||.+++-
T Consensus       119 -----------------~~~~~d~v~~~~~----l-~-~~~~~--~~~~~l~~i~~~LkpgG~l~i~  160 (239)
T TIGR00740       119 -----------------EIKNASMVILNFT----L-Q-FLPPE--DRIALLTKIYEGLNPNGVLVLS  160 (239)
T ss_pred             -----------------CCCCCCEEeeecc----h-h-hCCHH--HHHHHHHHHHHhcCCCeEEEEe
Confidence                             1234888776210    0 0 01111  1367999999999999999874

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.67  E-value=5.9e-08  Score=79.41  Aligned_cols=94  Identities=26%  Similarity=0.336  Sum_probs=71.9

Q ss_pred             EEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccC
Q 038592          267 LCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKD  346 (478)
Q Consensus       267 LvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~  346 (478)
                      |.+|+|.|..+..|.++.+.+|+++|+++.+++.|++.+.   ..++.+..+|..++                       
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~---~~~~~~~~~d~~~l-----------------------   54 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLK---NEGVSFRQGDAEDL-----------------------   54 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTT---TSTEEEEESBTTSS-----------------------
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccc---ccCchheeehHHhC-----------------------
Confidence            7899999999999998867899999999999999999875   34567888886655                       


Q ss_pred             CCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC-ChHHHHHHHHHccCcCcEEEE
Q 038592          347 GNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF-VRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       347 ~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f-~~~efl~~~~~~L~~~Gilv~  404 (478)
                             +.++..||+|+.--  .     +    ..+ -...+++.+++.|+|||.+++
T Consensus        55 -------~~~~~sfD~v~~~~--~-----~----~~~~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   55 -------PFPDNSFDVVFSNS--V-----L----HHLEDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             -------SS-TT-EEEEEEES--H-----G----GGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred             -------cccccccccccccc--c-----e----eeccCHHHHHHHHHHHcCcCeEEeC
Confidence                   12578899999831  1     1    011 347899999999999999985

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=98.65  E-value=7.1e-08  Score=94.73  Aligned_cols=116  Identities=26%  Similarity=0.348  Sum_probs=77.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      +.+||.+|+|+|.++..|.+..  +.+|++||+++.|+++|++...-....+++++++|+.+.=                
T Consensus        48 g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp----------------  111 (233)
T PF01209_consen   48 GDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLP----------------  111 (233)
T ss_dssp             --EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB------------------
T ss_pred             CCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhc----------------
Confidence            5699999999999999888875  4799999999999999998764322348999999998751                


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE-EeCCCCchHHHHHH
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM-NVIPPNRSFYDMLI  418 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~-N~~~~~~~~~~~v~  418 (478)
                                    .+++.||+|++--       |+.--|   --...++.+++.|+|||.+++ -...+.....+.+.
T Consensus       112 --------------~~d~sfD~v~~~f-------glrn~~---d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~  166 (233)
T PF01209_consen  112 --------------FPDNSFDAVTCSF-------GLRNFP---DRERALREMYRVLKPGGRLVILEFSKPRNPLLRALY  166 (233)
T ss_dssp             --------------S-TT-EEEEEEES--------GGG-S---SHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHH
T ss_pred             --------------CCCCceeEEEHHh-------hHHhhC---CHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhcee
Confidence                          2568899999821       221111   247799999999999998875 44434444444333

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.65  E-value=4.7e-07  Score=96.92  Aligned_cols=132  Identities=17%  Similarity=0.185  Sum_probs=95.6

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.+|+|.|+.+.++.+..  ..+|+++|+++.+++.+++.+.-..-.+++++.+|+.++.                
T Consensus       251 g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~----------------  314 (445)
T PRK14904        251 GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS----------------  314 (445)
T ss_pred             CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc----------------
Confidence            4689999999999888888765  3699999999999999998764222236899999998763                


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCC-CCCC---C----------ChHHHHHHHHHccCcCcEEEEEe
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSA-PPVE---F----------VRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~-Pp~~---f----------~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                     ....||+|++|+..+..  |+.. -|..   +          ....+|..+.+.|+|||.+++.+
T Consensus       315 ---------------~~~~fD~Vl~D~Pcsg~--g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst  377 (445)
T PRK14904        315 ---------------PEEQPDAILLDAPCTGT--GVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT  377 (445)
T ss_pred             ---------------cCCCCCEEEEcCCCCCc--chhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence                           23579999999754321  2211 1111   1          23568999999999999999988


Q ss_pred             CCCCchHHHHHHHHHHHhcCc
Q 038592          407 IPPNRSFYDMLIQEFRDVFQE  427 (478)
Q Consensus       407 ~~~~~~~~~~v~~~l~~vF~~  427 (478)
                      .+-.++--..+++.+.+.++.
T Consensus       378 cs~~~~Ene~~v~~~l~~~~~  398 (445)
T PRK14904        378 CSIEPEENELQIEAFLQRHPE  398 (445)
T ss_pred             CCCChhhHHHHHHHHHHhCCC
Confidence            877655445566666665554

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=98.64  E-value=4.5e-07  Score=90.35  Aligned_cols=107  Identities=21%  Similarity=0.189  Sum_probs=80.1

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCC---CCCCeEEEEchHHHHHHHHHhhhcCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLE---DGEFLQVSVGDAIEFLEKLARQIVGKNPD  337 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~---~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~  337 (478)
                      ..+||.+|+|+|.++..+.+..  ..+|++||++++|++.|++.....   ..++++++++|+.++              
T Consensus        74 ~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l--------------  139 (261)
T PLN02233         74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL--------------  139 (261)
T ss_pred             CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC--------------
Confidence            4699999999999998888764  369999999999999998765321   235799999998654              


Q ss_pred             CCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          338 SFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                      +..+..||+|++..       ++...+   --..+++++++.|+|||.+++--+..
T Consensus       140 ----------------p~~~~sfD~V~~~~-------~l~~~~---d~~~~l~ei~rvLkpGG~l~i~d~~~  185 (261)
T PLN02233        140 ----------------PFDDCYFDAITMGY-------GLRNVV---DRLKAMQEMYRVLKPGSRVSILDFNK  185 (261)
T ss_pred             ----------------CCCCCCEeEEEEec-------ccccCC---CHHHHHHHHHHHcCcCcEEEEEECCC
Confidence                            01456799998732       111111   23789999999999999987754444

>PRK04266 fibrillarin; Provisional

Probab=98.64  E-value=6.1e-07  Score=87.81  Aligned_cols=141  Identities=19%  Similarity=0.228  Sum_probs=93.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.+|+|.|.++..|.+.. ..+|.+||+++.+++.+.+....  .+++.++.+|+......  .            
T Consensus        73 g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~--~~nv~~i~~D~~~~~~~--~------------  136 (226)
T PRK04266         73 GSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE--RKNIIPILADARKPERY--A------------  136 (226)
T ss_pred             CCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh--cCCcEEEECCCCCcchh--h------------
Confidence            4699999999999999998876 46999999999988866554331  25688999997542100  0            


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC-------CchHH
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP-------NRSFY  414 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~-------~~~~~  414 (478)
                                   .-...||+|+.|+...+            ....+++.+++.|+|||.+++.+..+       .....
T Consensus       137 -------------~l~~~~D~i~~d~~~p~------------~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~  191 (226)
T PRK04266        137 -------------HVVEKVDVIYQDVAQPN------------QAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIF  191 (226)
T ss_pred             -------------hccccCCEEEECCCChh------------HHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHH
Confidence                         01245999999753211            11457899999999999999864332       12333


Q ss_pred             HHHHHHHHHh-cCccEEEeecc--cceEEEEEE
Q 038592          415 DMLIQEFRDV-FQELYEIDVGN--EENFVLIAT  444 (478)
Q Consensus       415 ~~v~~~l~~v-F~~v~~~~v~~--~~N~Vl~a~  444 (478)
                      +..++.+++. |..+.......  ..+..+++.
T Consensus       192 ~~~~~~l~~aGF~~i~~~~l~p~~~~h~~~v~~  224 (226)
T PRK04266        192 KEEIRKLEEGGFEILEVVDLEPYHKDHAAVVAR  224 (226)
T ss_pred             HHHHHHHHHcCCeEEEEEcCCCCcCCeEEEEEE
Confidence            4456667665 77666655532  234445543

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=98.64  E-value=1.8e-07  Score=93.28  Aligned_cols=105  Identities=20%  Similarity=0.238  Sum_probs=81.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.||+|.|.++..|....+.+|+++|+++.+++.|++.+..  .++++++++|+.+.                   
T Consensus        53 ~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~~-------------------  111 (263)
T PTZ00098         53 NSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDILKK-------------------  111 (263)
T ss_pred             CCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCcccC-------------------
Confidence            469999999999999888776678999999999999999998753  46799999997632                   


Q ss_pred             cccCCCccCCCCCCCCceeEEEE-eCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMV-DLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIP  408 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIiv-Dv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~  408 (478)
                                 +.++.+||+|+. ++...       .++.  -...+++.+++.|+|||.|++.-..
T Consensus       112 -----------~~~~~~FD~V~s~~~l~h-------~~~~--d~~~~l~~i~r~LkPGG~lvi~d~~  158 (263)
T PTZ00098        112 -----------DFPENTFDMIYSRDAILH-------LSYA--DKKKLFEKCYKWLKPNGILLITDYC  158 (263)
T ss_pred             -----------CCCCCCeEEEEEhhhHHh-------CCHH--HHHHHHHHHHHHcCCCcEEEEEEec
Confidence                       014568999998 32110       0111  1367999999999999999986543

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=98.63  E-value=4.5e-07  Score=91.67  Aligned_cols=117  Identities=21%  Similarity=0.255  Sum_probs=84.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCC-CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLED-GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~-d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.+|+|.|.++..+.+....+|++||+||.+++.|++.+.... ..++.+..+|....                  
T Consensus       160 g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~------------------  221 (288)
T TIGR00406       160 DKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP------------------  221 (288)
T ss_pred             CCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc------------------
Confidence            47999999999999988876544699999999999999998875432 34567776662211                  


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHH
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEF  421 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l  421 (478)
                                    ...+||+|+.++..           .  .-..++..+++.|+|||.+++--...  .....+...+
T Consensus       222 --------------~~~~fDlVvan~~~-----------~--~l~~ll~~~~~~LkpgG~li~sgi~~--~~~~~v~~~~  272 (288)
T TIGR00406       222 --------------IEGKADVIVANILA-----------E--VIKELYPQFSRLVKPGGWLILSGILE--TQAQSVCDAY  272 (288)
T ss_pred             --------------cCCCceEEEEecCH-----------H--HHHHHHHHHHHHcCCCcEEEEEeCcH--hHHHHHHHHH
Confidence                          34579999986421           1  12578999999999999999754433  2245667777


Q ss_pred             HHhcC
Q 038592          422 RDVFQ  426 (478)
Q Consensus       422 ~~vF~  426 (478)
                      ++.|.
T Consensus       273 ~~~f~  277 (288)
T TIGR00406       273 EQGFT  277 (288)
T ss_pred             HccCc
Confidence            76664

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PLN02244 tocopherol O-methyltransferase

Probab=98.63  E-value=2.1e-07  Score=96.20  Aligned_cols=105  Identities=18%  Similarity=0.258  Sum_probs=81.1

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      +.+||.||+|.|.++..|.+.++.+|++||+++.+++.|++..... ..++++++++|+.+.-                 
T Consensus       119 ~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~-----------------  181 (340)
T PLN02244        119 PKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQP-----------------  181 (340)
T ss_pred             CCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCC-----------------
Confidence            5789999999999999998877889999999999999998765322 2357999999987641                 


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVI  407 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~  407 (478)
                                   ..+..||+|+.- .+..   .+   +   -...+++.+++.|+|||.|++..+
T Consensus       182 -------------~~~~~FD~V~s~-~~~~---h~---~---d~~~~l~e~~rvLkpGG~lvi~~~  224 (340)
T PLN02244        182 -------------FEDGQFDLVWSM-ESGE---HM---P---DKRKFVQELARVAAPGGRIIIVTW  224 (340)
T ss_pred             -------------CCCCCccEEEEC-Cchh---cc---C---CHHHHHHHHHHHcCCCcEEEEEEe
Confidence                         145789999982 1110   01   1   236899999999999999988554

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.63  E-value=7.5e-07  Score=86.01  Aligned_cols=141  Identities=22%  Similarity=0.310  Sum_probs=95.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHH--HHHHHhhhcCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEF--LEKLARQIVGKNPDS  338 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~--l~~~~~~~~~~~~~~  338 (478)
                      ..+||.||+|.|.++..+.+..  ..+|++||+++.           ...++++++.+|..+.  +.++...        
T Consensus        52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~v~~i~~D~~~~~~~~~i~~~--------  112 (209)
T PRK11188         52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVGVDFLQGDFRDELVLKALLER--------  112 (209)
T ss_pred             CCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCCcEEEecCCCChHHHHHHHHH--------
Confidence            4589999999999999888875  369999999992           1124689999998764  3332211        


Q ss_pred             CCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC-----ChHHHHHHHHHccCcCcEEEEEeCCCCchH
Q 038592          339 FGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF-----VRKDVLLAARLILSDFGIFVMNVIPPNRSF  413 (478)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f-----~~~efl~~~~~~L~~~Gilv~N~~~~~~~~  413 (478)
                                      .....||+|+.|..... . |.  |....     ....+|+.+.+.|+|||.|++-++... . 
T Consensus       113 ----------------~~~~~~D~V~S~~~~~~-~-g~--~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~-~-  170 (209)
T PRK11188        113 ----------------VGDSKVQVVMSDMAPNM-S-GT--PAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGE-G-  170 (209)
T ss_pred             ----------------hCCCCCCEEecCCCCcc-C-CC--hHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCc-C-
Confidence                            13567999999753211 1 10  11010     125689999999999999998765542 2 


Q ss_pred             HHHHHHHHHHhcCccEEEee----cccceEEEEEE
Q 038592          414 YDMLIQEFRDVFQELYEIDV----GNEENFVLIAT  444 (478)
Q Consensus       414 ~~~v~~~l~~vF~~v~~~~v----~~~~N~Vl~a~  444 (478)
                      ...++..+++.|..+..++-    .+.....++|.
T Consensus       171 ~~~~l~~l~~~f~~v~~~Kp~ssr~~s~e~~~~~~  205 (209)
T PRK11188        171 FDEYLREIRSLFTKVKVRKPDSSRARSREVYIVAT  205 (209)
T ss_pred             HHHHHHHHHhCceEEEEECCccccccCceeEEEee
Confidence            45567889999998877763    22334445554

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.62  E-value=2.5e-07  Score=104.34  Aligned_cols=115  Identities=17%  Similarity=0.176  Sum_probs=84.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCC--CCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLED--GEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~--d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      .++||.+|+|+|+++..+......+|++||+++..+++|++.+.+..  ..+++++.+|+.+|+++              
T Consensus       539 g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~--------------  604 (702)
T PRK11783        539 GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKE--------------  604 (702)
T ss_pred             CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHH--------------
Confidence            47999999999999988887533589999999999999999985432  25899999999999865              


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC----ChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF----VRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f----~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                     ...+||+||+|...-.....+   ...+    .-.+.+..+.++|+|||++++-..+.
T Consensus       605 ---------------~~~~fDlIilDPP~f~~~~~~---~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~  659 (702)
T PRK11783        605 ---------------AREQFDLIFIDPPTFSNSKRM---EDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR  659 (702)
T ss_pred             ---------------cCCCcCEEEECCCCCCCCCcc---chhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence                           245799999984321100000   0000    11457788889999999998755444

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.61  E-value=6.7e-07  Score=95.65  Aligned_cols=134  Identities=20%  Similarity=0.238  Sum_probs=93.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.+|+|.|+.+..+.+..  +.+|++||+++..++.+++.+....-.+++++.+|+.++...              
T Consensus       251 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~--------------  316 (444)
T PRK14902        251 GDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEK--------------  316 (444)
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccch--------------
Confidence            4689999999999998888875  579999999999999999876422213499999999876422              


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCC-CCCCCC-C------------ChHHHHHHHHHccCcCcEEEEEe
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGT-SAPPVE-F------------VRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~-s~Pp~~-f------------~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                     -...||+|++|...+. . |+ .--|.. +            +..++|+.+.+.|+|||.+++..
T Consensus       317 ---------------~~~~fD~Vl~D~Pcsg-~-G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst  379 (444)
T PRK14902        317 ---------------FAEKFDKILVDAPCSG-L-GVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST  379 (444)
T ss_pred             ---------------hcccCCEEEEcCCCCC-C-eeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence                           1256999999975331 1 21 111111 1            23578999999999999999877


Q ss_pred             CCCCchHHHHHHHHHHHhcCc
Q 038592          407 IPPNRSFYDMLIQEFRDVFQE  427 (478)
Q Consensus       407 ~~~~~~~~~~v~~~l~~vF~~  427 (478)
                      .+-..+.-..++..+.+..+.
T Consensus       380 cs~~~~Ene~vv~~~l~~~~~  400 (444)
T PRK14902        380 CTIEKEENEEVIEAFLEEHPE  400 (444)
T ss_pred             CCCChhhhHHHHHHHHHhCCC
Confidence            665444344455554454443

>TIGR00536 hemK_fam HemK family putative methylases

Probab=98.60  E-value=8.4e-07  Score=89.43  Aligned_cols=147  Identities=18%  Similarity=0.186  Sum_probs=95.8

Q ss_pred             CeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          264 PKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       264 ~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      .+||.+|+|+|.++..+.... +.+|++||+++..+++|++..... ...+++++.+|..+.+                 
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~-----------------  178 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPL-----------------  178 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccC-----------------
Confidence            689999999999999888875 589999999999999999876422 2356999999986542                 


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCC--CC-----CCCCCCCC--------ChHHHHHHHHHccCcCcEEEEEe
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDAR--NG-----TSAPPVEF--------VRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~--~g-----~s~Pp~~f--------~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                    ...+||+|+.+..--...  ..     ...|...+        .-..+++.+.+.|+|||.+++.+
T Consensus       179 --------------~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~  244 (284)
T TIGR00536       179 --------------AGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI  244 (284)
T ss_pred             --------------cCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence                          223799999963111000  00     01121111        23568888999999999999988


Q ss_pred             CCCCchHHHHHHHHHHH--hcCccEEEeecccceEEEEEE
Q 038592          407 IPPNRSFYDMLIQEFRD--VFQELYEIDVGNEENFVLIAT  444 (478)
Q Consensus       407 ~~~~~~~~~~v~~~l~~--vF~~v~~~~v~~~~N~Vl~a~  444 (478)
                      ......   .+.+.+..  -|..+..++=-.+...++++.
T Consensus       245 g~~q~~---~~~~~~~~~~~~~~~~~~~D~~g~~R~~~~~  281 (284)
T TIGR00536       245 GNWQQK---SLKELLRIKFTWYDVENGRDLNGKERVVLGF  281 (284)
T ss_pred             CccHHH---HHHHHHHhcCCCceeEEecCCCCCceEEEEE
Confidence            765333   23333432  244443333122345666664

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK14968 putative methyltransferase; Provisional

Probab=98.60  E-value=8.7e-07  Score=82.44  Aligned_cols=115  Identities=21%  Similarity=0.199  Sum_probs=78.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCC--CCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLED--GEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~--d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.+|+|.|.++..+... +.+|+++|+++.+++.|++.+....  +.++.++.+|..+.+                
T Consensus        24 ~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----------------   86 (188)
T PRK14968         24 GDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF----------------   86 (188)
T ss_pred             CCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc----------------
Confidence            468999999999999988877 7899999999999999987764321  222888889875532                


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCC--C--------CCCCCCC-CCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDAR--N--------GTSAPPV-EFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~--~--------g~s~Pp~-~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                     ...+||+|+.+.--....  .        ...+... ...-..+++.+.+.|+|+|.+++.+.+.
T Consensus        87 ---------------~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~  151 (188)
T PRK14968         87 ---------------RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL  151 (188)
T ss_pred             ---------------cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc
Confidence                           233799999853110000  0        0000000 0123568999999999999988776543

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=98.60  E-value=7.9e-07  Score=87.53  Aligned_cols=107  Identities=25%  Similarity=0.330  Sum_probs=84.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      +.+||.||+|+|-++..+.+.. ..+|+++|+++.|+++|++-..-..-..++++++||.+.                  
T Consensus        52 g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~L------------------  113 (238)
T COG2226          52 GDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENL------------------  113 (238)
T ss_pred             CCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhC------------------
Confidence            6799999999999999999876 589999999999999999887533222399999999875                  


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                  +.+++.||++.+.-       |+.--+   --+..|+.++|.|+|||.+++.=.+.
T Consensus       114 ------------Pf~D~sFD~vt~~f-------glrnv~---d~~~aL~E~~RVlKpgG~~~vle~~~  159 (238)
T COG2226         114 ------------PFPDNSFDAVTISF-------GLRNVT---DIDKALKEMYRVLKPGGRLLVLEFSK  159 (238)
T ss_pred             ------------CCCCCccCEEEeee-------hhhcCC---CHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence                        13788999999942       221111   23789999999999999888754443

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=98.58  E-value=1.6e-07  Score=79.47  Aligned_cols=94  Identities=23%  Similarity=0.355  Sum_probs=70.0

Q ss_pred             EEEEeCchhHHHHHHHhhC----CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          266 ALCVGVGGGALVSFLRTQL----DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       266 VLvIGlGgG~L~~~L~~~~----~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ||.+|+|+|...+.+.+.+    ..++++||+|+++++.|++++.- ...+++++++|+.++- .               
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~-~~~~~~~~~~D~~~l~-~---------------   63 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSE-DGPKVRFVQADARDLP-F---------------   63 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHH-TTTTSEEEESCTTCHH-H---------------
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchh-cCCceEEEECCHhHCc-c---------------
Confidence            6899999999999998875    38999999999999999998742 2237899999998753 2               


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCC---hHHHHHHHHHccCcCc
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFV---RKDVLLAARLILSDFG  400 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~---~~efl~~~~~~L~~~G  400 (478)
                                    ...+||+|++=  . ..       -.+|-   -..+++.+.++|+|||
T Consensus        64 --------------~~~~~D~v~~~--~-~~-------~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   64 --------------SDGKFDLVVCS--G-LS-------LHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             --------------HSSSEEEEEE---T-TG-------GGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             --------------cCCCeeEEEEc--C-Cc-------cCCCCHHHHHHHHHHHHHHhCCCC
Confidence                          35689999991  0 00       11122   3789999999999988

>TIGR00477 tehB tellurite resistance protein TehB

Probab=98.58  E-value=4.5e-07  Score=86.40  Aligned_cols=101  Identities=13%  Similarity=0.103  Sum_probs=71.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      +.+||.+|+|.|.++.+|.+. +.+|+++|+++.+++.|++..... +-++++.+.|...+-                  
T Consensus        31 ~~~vLDiGcG~G~~a~~la~~-g~~V~~iD~s~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~------------------   90 (195)
T TIGR00477        31 PCKTLDLGCGQGRNSLYLSLA-GYDVRAWDHNPASIASVLDMKARE-NLPLRTDAYDINAAA------------------   90 (195)
T ss_pred             CCcEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHh-CCCceeEeccchhcc------------------
Confidence            579999999999999999875 679999999999999998765321 113666677754320                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                   ...+||+|+.-..    .  ...++.  ....+++.+++.|+|||.+++
T Consensus        91 -------------~~~~fD~I~~~~~----~--~~~~~~--~~~~~l~~~~~~LkpgG~lli  131 (195)
T TIGR00477        91 -------------LNEDYDFIFSTVV----F--MFLQAG--RVPEIIANMQAHTRPGGYNLI  131 (195)
T ss_pred             -------------ccCCCCEEEEecc----c--ccCCHH--HHHHHHHHHHHHhCCCcEEEE
Confidence                         2346999987210    0  000111  236899999999999998554

Part of a tellurite-reducing operon tehA and tehB

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.55  E-value=5.5e-07  Score=86.51  Aligned_cols=103  Identities=22%  Similarity=0.307  Sum_probs=80.6

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      +.+||.||+|.|.++..+.+.. ..+++++|+++.+++.|++.+.    ++++++.+|..+..                 
T Consensus        35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~-----------------   93 (240)
T TIGR02072        35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLP-----------------   93 (240)
T ss_pred             CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCC-----------------
Confidence            5789999999999999888875 5789999999999999998875    37889999976541                 


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                   ...++||+|+....       +...+   -...++..+++.|+|||.+++.....
T Consensus        94 -------------~~~~~fD~vi~~~~-------l~~~~---~~~~~l~~~~~~L~~~G~l~~~~~~~  138 (240)
T TIGR02072        94 -------------LEDSSFDLIVSNLA-------LQWCD---DLSQALSELARVLKPGGLLAFSTFGP  138 (240)
T ss_pred             -------------CCCCceeEEEEhhh-------hhhcc---CHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence                         13567999998421       10011   13679999999999999999876544

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.55  E-value=6.1e-07  Score=86.97  Aligned_cols=110  Identities=24%  Similarity=0.267  Sum_probs=89.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhh-C-CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQ-L-DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~-~-~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      ++++|.||.=+|+.+...+.. + +.+|+++|+|+.-.+++.++-.+. -+..++++++++.+-|.++..+         
T Consensus        74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~---------  144 (237)
T KOG1663|consen   74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLAD---------  144 (237)
T ss_pred             CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhc---------
Confidence            789999999999866555544 4 589999999999999998776544 3678999999999999997653         


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE-EeCCC
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM-NVIPP  409 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~-N~~~~  409 (478)
                                     .....||.+|+|.|...            +. .+++.+-++|++||++++ |+..+
T Consensus       145 ---------------~~~~tfDfaFvDadK~n------------Y~-~y~e~~l~Llr~GGvi~~DNvl~~  187 (237)
T KOG1663|consen  145 ---------------GESGTFDFAFVDADKDN------------YS-NYYERLLRLLRVGGVIVVDNVLWP  187 (237)
T ss_pred             ---------------CCCCceeEEEEccchHH------------HH-HHHHHHHhhcccccEEEEeccccC
Confidence                           25678999999987643            22 799999999999999998 65443

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.55  E-value=8.5e-07  Score=96.42  Aligned_cols=152  Identities=15%  Similarity=0.156  Sum_probs=97.1

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      +.+||.+|+|+|+++..+.... +.+|++||+++.++++|++.+... .+++++++.+|..+.+                
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~----------------  202 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENI----------------  202 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhC----------------
Confidence            4689999999999998887664 689999999999999999876321 2358999999986543                


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCC--CCC------CCCCCCCC--------hHHHHHHHHHccCcCcEEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDAR--NGT------SAPPVEFV--------RKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~--~g~------s~Pp~~f~--------~~efl~~~~~~L~~~Gilv~  404 (478)
                                     ...+||+|+.+..--...  ..+      .-|...|+        -..+++.+.+.|+|||.+++
T Consensus       203 ---------------~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l  267 (506)
T PRK01544        203 ---------------EKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL  267 (506)
T ss_pred             ---------------cCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE
Confidence                           235799999854110000  000      01211222        24467788899999999998


Q ss_pred             EeCCCCchHHHHHHHHHHHh-cCccEEEeecccceEEEEEEcCCC
Q 038592          405 NVIPPNRSFYDMLIQEFRDV-FQELYEIDVGNEENFVLIATGLSI  448 (478)
Q Consensus       405 N~~~~~~~~~~~v~~~l~~v-F~~v~~~~v~~~~N~Vl~a~~~~~  448 (478)
                      -+.....   +.+.+.+.+. |..+..++=-.+...+++++...+
T Consensus       268 Eig~~q~---~~v~~~~~~~g~~~~~~~~D~~g~~R~v~~~~~~~  309 (506)
T PRK01544        268 EIGFKQE---EAVTQIFLDHGYNIESVYKDLQGHSRVILISPINL  309 (506)
T ss_pred             EECCchH---HHHHHHHHhcCCCceEEEecCCCCceEEEeccccC
Confidence            6544333   3344444443 444433332233467777765544

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.54  E-value=4.5e-07  Score=87.06  Aligned_cols=98  Identities=22%  Similarity=0.188  Sum_probs=74.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.+|+|.|.++..+.+.. .+|++||+++.+++.|++.+....-.+++++.+|+.+.+.                 
T Consensus        79 ~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----------------  140 (212)
T PRK00312         79 GDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP-----------------  140 (212)
T ss_pred             CCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCC-----------------
Confidence            4699999999999888777654 4899999999999999988753222458999999854321                 


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVI  407 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~  407 (478)
                                   ...+||+|+++...                ..+.+.+.+.|+|||.+++.+.
T Consensus       141 -------------~~~~fD~I~~~~~~----------------~~~~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        141 -------------AYAPFDRILVTAAA----------------PEIPRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             -------------cCCCcCEEEEccCc----------------hhhhHHHHHhcCCCcEEEEEEc
Confidence                         23579999996411                1223557889999999998776

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=98.54  E-value=1.3e-06  Score=90.49  Aligned_cols=140  Identities=16%  Similarity=0.143  Sum_probs=92.7

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.+|+|.|.++..+.+.. ..+|+++|+++.+++.|++.+.... -..+++.+|+...                  
T Consensus       197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~-l~~~~~~~D~~~~------------------  257 (342)
T PRK09489        197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANG-LEGEVFASNVFSD------------------  257 (342)
T ss_pred             CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCEEEEcccccc------------------
Confidence            3589999999999999988874 5799999999999999998765321 2346777887543                  


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHH
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEF  421 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l  421 (478)
                                    ...+||+|+++.  +-. .++.  ...-....|+..+++.|+|||.+.+-. ++... +.   ..+
T Consensus       258 --------------~~~~fDlIvsNP--PFH-~g~~--~~~~~~~~~i~~a~~~LkpgG~L~iVa-n~~l~-y~---~~l  313 (342)
T PRK09489        258 --------------IKGRFDMIISNP--PFH-DGIQ--TSLDAAQTLIRGAVRHLNSGGELRIVA-NAFLP-YP---DLL  313 (342)
T ss_pred             --------------cCCCccEEEECC--Ccc-CCcc--ccHHHHHHHHHHHHHhcCcCCEEEEEE-eCCCC-hH---HHH
Confidence                          235799999952  100 0110  000023789999999999999886522 22222 22   345


Q ss_pred             HHhcCccEEEeecccceEEEEEEcC
Q 038592          422 RDVFQELYEIDVGNEENFVLIATGL  446 (478)
Q Consensus       422 ~~vF~~v~~~~v~~~~N~Vl~a~~~  446 (478)
                      .+.|..+-.+. .+..=.|+-|.+.
T Consensus       314 ~~~Fg~~~~la-~~~~f~v~~a~~~  337 (342)
T PRK09489        314 DETFGSHEVLA-QTGRFKVYRAIMT  337 (342)
T ss_pred             HHHcCCeEEEE-eCCCEEEEEEEcc
Confidence            67898875554 3333455656543

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.54  E-value=8.8e-08  Score=92.62  Aligned_cols=100  Identities=25%  Similarity=0.237  Sum_probs=73.7

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCC--CEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQLD--FEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~--~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.||.|+|+.+..|.+..+  .+|++||++|.+++.|++.+.-..-.+++++++||..-..               
T Consensus        73 g~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~---------------  137 (209)
T PF01135_consen   73 GDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWP---------------  137 (209)
T ss_dssp             T-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTG---------------
T ss_pred             CCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccc---------------
Confidence            46999999999999988888753  4899999999999999998753333589999999976432               


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCC
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIP  408 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~  408 (478)
                                     ....||.|++....       .         +.-..+.+.|++||.+++-+..
T Consensus       138 ---------------~~apfD~I~v~~a~-------~---------~ip~~l~~qL~~gGrLV~pi~~  174 (209)
T PF01135_consen  138 ---------------EEAPFDRIIVTAAV-------P---------EIPEALLEQLKPGGRLVAPIGQ  174 (209)
T ss_dssp             ---------------GG-SEEEEEESSBB-------S---------S--HHHHHTEEEEEEEEEEESS
T ss_pred             ---------------cCCCcCEEEEeecc-------c---------hHHHHHHHhcCCCcEEEEEEcc
Confidence                           24579999995421       1         1223477789999999987764

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.54  E-value=2.8e-06  Score=80.13  Aligned_cols=142  Identities=21%  Similarity=0.275  Sum_probs=91.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHH--HHHHHhhhcCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEF--LEKLARQIVGKNPDS  338 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~--l~~~~~~~~~~~~~~  338 (478)
                      ..+||.+|+|+|.++..+....  ..+|++||++|.+        .   .++++++.+|..+.  +......        
T Consensus        33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~---~~~i~~~~~d~~~~~~~~~l~~~--------   93 (188)
T TIGR00438        33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------P---IENVDFIRGDFTDEEVLNKIRER--------   93 (188)
T ss_pred             CCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------c---CCCceEEEeeCCChhHHHHHHHH--------
Confidence            4699999999999998887764  3689999999964        1   24578888887542  2221110        


Q ss_pred             CCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC----ChHHHHHHHHHccCcCcEEEEEeCCCCchHH
Q 038592          339 FGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF----VRKDVLLAARLILSDFGIFVMNVIPPNRSFY  414 (478)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f----~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~  414 (478)
                                      ....+||+|++|... . ..|..+. .+.    ....++..+.+.|+|||.+++...... . .
T Consensus        94 ----------------~~~~~~D~V~~~~~~-~-~~g~~~~-~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~-~-~  152 (188)
T TIGR00438        94 ----------------VGDDKVDVVMSDAAP-N-ISGYWDI-DHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGE-E-I  152 (188)
T ss_pred             ----------------hCCCCccEEEcCCCC-C-CCCCccc-cHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCc-c-H
Confidence                            134579999997521 1 1111100 011    126789999999999999998764432 2 4


Q ss_pred             HHHHHHHHHhcCccEEEee--cccce--EEEEEE
Q 038592          415 DMLIQEFRDVFQELYEIDV--GNEEN--FVLIAT  444 (478)
Q Consensus       415 ~~v~~~l~~vF~~v~~~~v--~~~~N--~Vl~a~  444 (478)
                      ..++..++..|..+..++.  +.+.|  .+++|.
T Consensus       153 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (188)
T TIGR00438       153 DEYLNELRKLFEKVKVTKPQASRKRSAEVYIVAK  186 (188)
T ss_pred             HHHHHHHHhhhceEEEeCCCCCCcccceEEEEEe
Confidence            4677888888876665553  33333  445554

>PRK14967 putative methyltransferase; Provisional

Probab=98.53  E-value=5.3e-07  Score=87.51  Aligned_cols=127  Identities=20%  Similarity=0.180  Sum_probs=82.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.+|+|.|.++..+......+|++||+++.+++.|++.+... ..+++++.+|..+++                  
T Consensus        37 ~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~-~~~~~~~~~d~~~~~------------------   97 (223)
T PRK14967         37 GRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLA-GVDVDVRRGDWARAV------------------   97 (223)
T ss_pred             CCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHh-CCeeEEEECchhhhc------------------
Confidence            3699999999999998887653349999999999999999876422 125789999987653                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCC-CCCCCCC--CC-------CCC-CChHHHHHHHHHccCcCcEEEEEeCCCCc
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSG-DARNGTS--AP-------PVE-FVRKDVLLAARLILSDFGIFVMNVIPPNR  411 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~-d~~~g~s--~P-------p~~-f~~~efl~~~~~~L~~~Gilv~N~~~~~~  411 (478)
                                   ...+||+|+.|.--. ....+..  .|       ... -.-..+++.+.+.|++||.+++-..... 
T Consensus        98 -------------~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~-  163 (223)
T PRK14967         98 -------------EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS-  163 (223)
T ss_pred             -------------cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc-
Confidence                         345799999974110 0000000  00       000 0125688899999999999986443321 


Q ss_pred             hHHHHHHHHHHH
Q 038592          412 SFYDMLIQEFRD  423 (478)
Q Consensus       412 ~~~~~v~~~l~~  423 (478)
                      . ...+++.+++
T Consensus       164 ~-~~~~~~~l~~  174 (223)
T PRK14967        164 G-VERTLTRLSE  174 (223)
T ss_pred             C-HHHHHHHHHH
Confidence            1 2334555543

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=98.53  E-value=3.1e-07  Score=92.32  Aligned_cols=103  Identities=19%  Similarity=0.250  Sum_probs=75.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||+|.|+++.++.+..+++|++|.++++-.+.|++...-. ..+++++..+|-.++                  
T Consensus        63 G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~------------------  124 (273)
T PF02353_consen   63 GDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL------------------  124 (273)
T ss_dssp             T-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-------------------
T ss_pred             CCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc------------------
Confidence            5699999999999999999988999999999999999999876422 246899999997654                  


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC---ChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF---VRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f---~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                     ..+||.|+. +       +|.   +++   .-+.|++.+.+.|+|||.+++..+..
T Consensus       125 ---------------~~~fD~IvS-i-------~~~---Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~  169 (273)
T PF02353_consen  125 ---------------PGKFDRIVS-I-------EMF---EHVGRKNYPAFFRKISRLLKPGGRLVLQTITH  169 (273)
T ss_dssp             -----------------S-SEEEE-E-------SEG---GGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE
T ss_pred             ---------------CCCCCEEEE-E-------ech---hhcChhHHHHHHHHHHHhcCCCcEEEEEeccc
Confidence                           228999886 1       111   122   23789999999999999999987665

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.53  E-value=9.6e-07  Score=71.54  Aligned_cols=103  Identities=30%  Similarity=0.344  Sum_probs=78.0

Q ss_pred             eEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccc
Q 038592          265 KALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSL  344 (478)
Q Consensus       265 ~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~  344 (478)
                      +++.+|+|.|.+...+......++.++|+++..++.+++........+++++.+|..++...                  
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------   62 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPE------------------   62 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccc------------------
Confidence            47999999999888877744689999999999999998433222346799999999887531                  


Q ss_pred             cCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592          345 KDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       345 ~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                 ...+||+|+++.....       .  .-....+++.+.+.|+++|.+++-
T Consensus        63 -----------~~~~~d~i~~~~~~~~-------~--~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          63 -----------ADESFDVIISDPPLHH-------L--VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             -----------cCCceEEEEEccceee-------h--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence                       3467999999642211       0  114588999999999999999864

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=98.52  E-value=1.2e-06  Score=91.92  Aligned_cols=128  Identities=17%  Similarity=0.231  Sum_probs=93.7

Q ss_pred             CCeEEEEeCchhHHHHHHHhh-CCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQ-LDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~-~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      .+.+|.||+|.|.....+.+. ++..+++||+++.+++.|.+......-++++++.+|+..+++..              
T Consensus       123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~--------------  188 (390)
T PRK14121        123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELL--------------  188 (390)
T ss_pred             CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhC--------------
Confidence            468999999999988777765 47899999999999999987764433357999999999876431              


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHH
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEF  421 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l  421 (478)
                                    ++..+|.|++-.  +++...  .+...+..+.|+..+++.|++||.+.+..-.  ......++..+
T Consensus       189 --------------~~~s~D~I~lnF--PdPW~K--krHRRlv~~~fL~e~~RvLkpGG~l~l~TD~--~~y~~~~~e~~  248 (390)
T PRK14121        189 --------------PSNSVEKIFVHF--PVPWDK--KPHRRVISEDFLNEALRVLKPGGTLELRTDS--ELYFEFSLELF  248 (390)
T ss_pred             --------------CCCceeEEEEeC--CCCccc--cchhhccHHHHHHHHHHHcCCCcEEEEEEEC--HHHHHHHHHHH
Confidence                          457899999843  232210  1223467799999999999999999875543  34445555555


Q ss_pred             HHh
Q 038592          422 RDV  424 (478)
Q Consensus       422 ~~v  424 (478)
                      .+.
T Consensus       249 ~~~  251 (390)
T PRK14121        249 LKL  251 (390)
T ss_pred             HhC
Confidence            443

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=98.51  E-value=7.7e-07  Score=88.32  Aligned_cols=127  Identities=18%  Similarity=0.216  Sum_probs=86.6

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      +.+||.+|+|.|.++..+.+.. +.+|++||+|+..++.|++.+...   .++++.+|..+++.+.              
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~---~~~~~~~D~~~~l~~~--------------  149 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA---GGTVHEGDLYDALPTA--------------  149 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc---CCEEEEeechhhcchh--------------
Confidence            4589999999999998888765 579999999999999999887532   2578999988776331              


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCC--------CC--------ChHHHHHHHHHccCcCcEEEEE
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPV--------EF--------VRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~--------~f--------~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                    ...+||+|++|.---........+|.        .+        +-..++..+.++|+|||.+++-
T Consensus       150 --------------~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~  215 (251)
T TIGR03704       150 --------------LRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE  215 (251)
T ss_pred             --------------cCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence                          13469999997521110000000111        11        1257888899999999999976


Q ss_pred             eCCCCchHHHHHHHHHHH
Q 038592          406 VIPPNRSFYDMLIQEFRD  423 (478)
Q Consensus       406 ~~~~~~~~~~~v~~~l~~  423 (478)
                      .....   ...+...|++
T Consensus       216 ~~~~~---~~~v~~~l~~  230 (251)
T TIGR03704       216 TSERQ---APLAVEAFAR  230 (251)
T ss_pred             ECcch---HHHHHHHHHH
Confidence            54332   3455666655

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=98.50  E-value=1.6e-06  Score=81.90  Aligned_cols=125  Identities=22%  Similarity=0.243  Sum_probs=92.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhh-CCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQ-LDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~-~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ...++.||+|+|+++-.+... +..+|+++|-|++.++..++...--.-++++++.+||-+++.+               
T Consensus        35 g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~---------------   99 (187)
T COG2242          35 GDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPD---------------   99 (187)
T ss_pred             CCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcC---------------
Confidence            458999999999999877754 4689999999999999887653211146899999999999853               


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHH
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEF  421 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l  421 (478)
                                    .. .+|+||+-  .+   .         --++.|+.+...|++||.+|+|.+.....  ...++.+
T Consensus       100 --------------~~-~~daiFIG--Gg---~---------~i~~ile~~~~~l~~ggrlV~naitlE~~--~~a~~~~  148 (187)
T COG2242         100 --------------LP-SPDAIFIG--GG---G---------NIEEILEAAWERLKPGGRLVANAITLETL--AKALEAL  148 (187)
T ss_pred             --------------CC-CCCEEEEC--CC---C---------CHHHHHHHHHHHcCcCCeEEEEeecHHHH--HHHHHHH
Confidence                          22 79999992  11   1         23789999999999999999999876332  2345555


Q ss_pred             HHh-cCccEEEee
Q 038592          422 RDV-FQELYEIDV  433 (478)
Q Consensus       422 ~~v-F~~v~~~~v  433 (478)
                      ++. |.++..+.+
T Consensus       149 ~~~g~~ei~~v~i  161 (187)
T COG2242         149 EQLGGREIVQVQI  161 (187)
T ss_pred             HHcCCceEEEEEe
Confidence            554 214544443

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=98.50  E-value=6e-07  Score=90.15  Aligned_cols=125  Identities=20%  Similarity=0.241  Sum_probs=92.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCC-CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLED-GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~-d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||||.|+++.++.+..+++|++|.++++..+.|++-+.... ..++++...|-.++                  
T Consensus        73 G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~------------------  134 (283)
T COG2230          73 GMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF------------------  134 (283)
T ss_pred             CCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc------------------
Confidence            57999999999999999999999999999999999999998664322 25899999998877                  


Q ss_pred             ccccCCCccCCCCCCCCceeEEEE-eCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC-CchHHHHHHH
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMV-DLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP-NRSFYDMLIQ  419 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIiv-Dv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~-~~~~~~~v~~  419 (478)
                                     .++||-|+. .++.-  . |    +.  .-+.|++.+++.|+|||.+++..+.. +.......--
T Consensus       135 ---------------~e~fDrIvSvgmfEh--v-g----~~--~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~  190 (283)
T COG2230         135 ---------------EEPFDRIVSVGMFEH--V-G----KE--NYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDF  190 (283)
T ss_pred             ---------------ccccceeeehhhHHH--h-C----cc--cHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHH
Confidence                           233999885 22211  0 1    11  24889999999999999999987665 3222122233


Q ss_pred             HHHHhcCccE
Q 038592          420 EFRDVFQELY  429 (478)
Q Consensus       420 ~l~~vF~~v~  429 (478)
                      ..+-+||.-+
T Consensus       191 i~~yiFPgG~  200 (283)
T COG2230         191 IDKYIFPGGE  200 (283)
T ss_pred             HHHhCCCCCc
Confidence            4456788543

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.49  E-value=6.1e-07  Score=88.88  Aligned_cols=122  Identities=20%  Similarity=0.235  Sum_probs=89.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHH-HHHHHhhhcCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEF-LEKLARQIVGKNPDS  338 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~-l~~~~~~~~~~~~~~  338 (478)
                      ..+||..|.|.|+|+.+|.+..  ..+|...|+.++-.+.|++.|... .+.++++++.|..+- ..+            
T Consensus        41 G~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~------------  108 (247)
T PF08704_consen   41 GSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE------------  108 (247)
T ss_dssp             T-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST------------
T ss_pred             CCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc------------
Confidence            4699999999999999999874  479999999999999999887422 246899999997531 110            


Q ss_pred             CCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHcc-CcCcEEEEEeCCCCchHHHHH
Q 038592          339 FGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLIL-SDFGIFVMNVIPPNRSFYDML  417 (478)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L-~~~Gilv~N~~~~~~~~~~~v  417 (478)
                                      .....+|+||+|+-++               .+.+..+++.| ++||.+++-+.+-  +.....
T Consensus       109 ----------------~~~~~~DavfLDlp~P---------------w~~i~~~~~~L~~~gG~i~~fsP~i--eQv~~~  155 (247)
T PF08704_consen  109 ----------------ELESDFDAVFLDLPDP---------------WEAIPHAKRALKKPGGRICCFSPCI--EQVQKT  155 (247)
T ss_dssp             ----------------T-TTSEEEEEEESSSG---------------GGGHHHHHHHE-EEEEEEEEEESSH--HHHHHH
T ss_pred             ----------------cccCcccEEEEeCCCH---------------HHHHHHHHHHHhcCCceEEEECCCH--HHHHHH
Confidence                            1246799999998442               45889999999 8999999776554  556667


Q ss_pred             HHHHHHh-cCccE
Q 038592          418 IQEFRDV-FQELY  429 (478)
Q Consensus       418 ~~~l~~v-F~~v~  429 (478)
                      +..|++. |.++.
T Consensus       156 ~~~L~~~gf~~i~  168 (247)
T PF08704_consen  156 VEALREHGFTDIE  168 (247)
T ss_dssp             HHHHHHTTEEEEE
T ss_pred             HHHHHHCCCeeeE
Confidence            7778773 76543

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.49  E-value=2.9e-06  Score=90.43  Aligned_cols=134  Identities=19%  Similarity=0.175  Sum_probs=91.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.+|+|.|+.+..+.+.. +.+|+++|+++.+++.+++.+... +-+++++.+|+.+....               
T Consensus       245 g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~-g~~~~~~~~D~~~~~~~---------------  308 (427)
T PRK10901        245 GERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRL-GLKATVIVGDARDPAQW---------------  308 (427)
T ss_pred             CCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHc-CCCeEEEEcCcccchhh---------------
Confidence            4689999999999998888876 479999999999999999876422 12368999999764211               


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCC-CCCCCCC-------------ChHHHHHHHHHccCcCcEEEEEeC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGT-SAPPVEF-------------VRKDVLLAARLILSDFGIFVMNVI  407 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~-s~Pp~~f-------------~~~efl~~~~~~L~~~Gilv~N~~  407 (478)
                                   ....+||.|++|...+.  .|+ .--|...             ....+|..+.+.|+|||.+++.+.
T Consensus       309 -------------~~~~~fD~Vl~D~Pcs~--~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc  373 (427)
T PRK10901        309 -------------WDGQPFDRILLDAPCSA--TGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC  373 (427)
T ss_pred             -------------cccCCCCEEEECCCCCc--ccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence                         02457999999985432  121 1111110             134789999999999999998776


Q ss_pred             CCCchHHHHHHHHHHHhcCc
Q 038592          408 PPNRSFYDMLIQEFRDVFQE  427 (478)
Q Consensus       408 ~~~~~~~~~v~~~l~~vF~~  427 (478)
                      +-....-..++..+.+-.+.
T Consensus       374 s~~~~Ene~~v~~~l~~~~~  393 (427)
T PRK10901        374 SILPEENEQQIKAFLARHPD  393 (427)
T ss_pred             CCChhhCHHHHHHHHHhCCC
Confidence            55333333344444443333

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.48  E-value=5.7e-06  Score=78.83  Aligned_cols=100  Identities=23%  Similarity=0.210  Sum_probs=78.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCC--CEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQLD--FEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~--~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      +.+||.+|+|.|.++..+.+..+  .+++++|+++.+++.+++.+.  ...+++++.+|..++.                
T Consensus        40 ~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~----------------  101 (223)
T TIGR01934        40 GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALP----------------  101 (223)
T ss_pred             CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCC----------------
Confidence            57999999999998888777654  699999999999999999876  3567899999997652                


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                    ....+||+|++...       +...+   .-..+++.+++.|+|||.+++
T Consensus       102 --------------~~~~~~D~i~~~~~-------~~~~~---~~~~~l~~~~~~L~~gG~l~~  141 (223)
T TIGR01934       102 --------------FEDNSFDAVTIAFG-------LRNVT---DIQKALREMYRVLKPGGRLVI  141 (223)
T ss_pred             --------------CCCCcEEEEEEeee-------eCCcc---cHHHHHHHHHHHcCCCcEEEE
Confidence                          13457999987321       11111   136799999999999999986

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.47  E-value=1.7e-06  Score=90.90  Aligned_cols=114  Identities=25%  Similarity=0.255  Sum_probs=85.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCCCC--CCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGLED--GEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~~~--d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      .++||-+=+=+|+.+.+.... ++ +|+.||++...+++|++.+.+..  ..+.+++++|+++|+++..+          
T Consensus       218 GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~----------  286 (393)
T COG1092         218 GKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAER----------  286 (393)
T ss_pred             CCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHh----------
Confidence            479999999999987655543 55 99999999999999999997753  46799999999999998643          


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCC--h---HHHHHHHHHccCcCcEEEEEeCCC
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFV--R---KDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~--~---~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                      .+.+||+||+|-.+=-..      +....  .   ...+..+.++|+|||++++-..++
T Consensus       287 ----------------~g~~fDlIilDPPsF~r~------k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~  339 (393)
T COG1092         287 ----------------RGEKFDLIILDPPSFARS------KKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR  339 (393)
T ss_pred             ----------------cCCcccEEEECCcccccC------cccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence                            567999999984221000      11111  1   455677889999999998744444

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=98.47  E-value=2.8e-06  Score=84.05  Aligned_cols=109  Identities=19%  Similarity=0.197  Sum_probs=75.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCC-CCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDG-EFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d-~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.+|+|.|.++..+.+....+|+++|+||.+++.|++.+....- .++.+..                        
T Consensus       120 ~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~------------------------  175 (250)
T PRK00517        120 GKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQ------------------------  175 (250)
T ss_pred             CCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEcc------------------------
Confidence            579999999999999887765445799999999999999988653211 1111110                        


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHH
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEF  421 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l  421 (478)
                                    .+.+||+|+.++...             .-..++..+.+.|+|||.+++.-....  ....+...+
T Consensus       176 --------------~~~~fD~Vvani~~~-------------~~~~l~~~~~~~LkpgG~lilsgi~~~--~~~~v~~~l  226 (250)
T PRK00517        176 --------------GDLKADVIVANILAN-------------PLLELAPDLARLLKPGGRLILSGILEE--QADEVLEAY  226 (250)
T ss_pred             --------------CCCCcCEEEEcCcHH-------------HHHHHHHHHHHhcCCCcEEEEEECcHh--hHHHHHHHH
Confidence                          122699999864211             125688999999999999998644332  234556666


Q ss_pred             HHh
Q 038592          422 RDV  424 (478)
Q Consensus       422 ~~v  424 (478)
                      ++.
T Consensus       227 ~~~  229 (250)
T PRK00517        227 EEA  229 (250)
T ss_pred             HHC
Confidence            665

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.46  E-value=2.9e-06  Score=90.61  Aligned_cols=139  Identities=14%  Similarity=0.137  Sum_probs=95.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.+|+|.|+.+..+....  ..+|+++|+++..++.+++.+....-.+++++.+|+.++.....            
T Consensus       253 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~------------  320 (434)
T PRK14901        253 GEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKP------------  320 (434)
T ss_pred             cCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccc------------
Confidence            4689999999999998888765  36999999999999999877542222359999999987632100            


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCC-C------------ChHHHHHHHHHccCcCcEEEEEeC
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVE-F------------VRKDVLLAARLILSDFGIFVMNVI  407 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~-f------------~~~efl~~~~~~L~~~Gilv~N~~  407 (478)
                                    ....+||.|++|+..+- .+.+.--|.. .            +..++|.++.+.|+|||.+++.+.
T Consensus       321 --------------~~~~~fD~Vl~DaPCSg-~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystc  385 (434)
T PRK14901        321 --------------QWRGYFDRILLDAPCSG-LGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATC  385 (434)
T ss_pred             --------------cccccCCEEEEeCCCCc-ccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence                          02457999999986432 1111111111 0            147889999999999999998776


Q ss_pred             CCCchHHHHHHHHHHHhcCcc
Q 038592          408 PPNRSFYDMLIQEFRDVFQEL  428 (478)
Q Consensus       408 ~~~~~~~~~v~~~l~~vF~~v  428 (478)
                      +-.++--..++..+.+-++..
T Consensus       386 si~~~Ene~~v~~~l~~~~~~  406 (434)
T PRK14901        386 TLHPAENEAQIEQFLARHPDW  406 (434)
T ss_pred             CCChhhHHHHHHHHHHhCCCc
Confidence            665544455555555555543

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=98.46  E-value=3.2e-06  Score=80.62  Aligned_cols=140  Identities=17%  Similarity=0.238  Sum_probs=96.7

Q ss_pred             CeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCccc
Q 038592          264 PKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACS  343 (478)
Q Consensus       264 ~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~  343 (478)
                      .++|.+|+|.|.++..|..+ --+++++|+++.-++.|++..+  .-+++++++.|--++.                   
T Consensus        45 ~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~--~~~~V~~~~~dvp~~~-------------------  102 (201)
T PF05401_consen   45 RRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLA--GLPHVEWIQADVPEFW-------------------  102 (201)
T ss_dssp             EEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTT--T-SSEEEEES-TTT---------------------
T ss_pred             ceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcC--CCCCeEEEECcCCCCC-------------------
Confidence            58999999999999988876 3599999999999999999876  3478999999987763                   


Q ss_pred             ccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCCh-----HHHHHHHHHccCcCcEEEEEeCCC-------Cc
Q 038592          344 LKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVR-----KDVLLAARLILSDFGIFVMNVIPP-------NR  411 (478)
Q Consensus       344 ~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~-----~efl~~~~~~L~~~Gilv~N~~~~-------~~  411 (478)
                                  +..+||+|++-    . .       ..|++     ..++..+...|+|||.+|+--+..       +.
T Consensus       103 ------------P~~~FDLIV~S----E-V-------lYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~  158 (201)
T PF05401_consen  103 ------------PEGRFDLIVLS----E-V-------LYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHA  158 (201)
T ss_dssp             -------------SS-EEEEEEE----S---------GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S
T ss_pred             ------------CCCCeeEEEEe----h-H-------hHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcc
Confidence                        56789999992    1 1       12332     347888999999999999854422       23


Q ss_pred             hHHHHHHHHHHHhcCccEEEeec---ccceEEEEEEcCCCC
Q 038592          412 SFYDMLIQEFRDVFQELYEIDVG---NEENFVLIATGLSIV  449 (478)
Q Consensus       412 ~~~~~v~~~l~~vF~~v~~~~v~---~~~N~Vl~a~~~~~~  449 (478)
                      .-.+.|+..|++.|..|-.+.+.   ...+.+|....+|..
T Consensus       159 ~ga~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (201)
T PF05401_consen  159 AGAETVLEMLQEHLTEVERVECRGGSPNEDCLLARFRNPVS  199 (201)
T ss_dssp             --HHHHHHHHHHHSEEEEEEEEE-SSTTSEEEEEEEE--SS
T ss_pred             cchHHHHHHHHHHhhheeEEEEcCCCCCCceEeeeecCCcC
Confidence            33567888889999887666652   245677777777764

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.46  E-value=1.4e-06  Score=86.68  Aligned_cols=103  Identities=23%  Similarity=0.280  Sum_probs=75.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||+||+|+|.++..+.+..  ..+|++||+++.+++.|++.+....-++++++.+|..+.-                
T Consensus        78 g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~----------------  141 (272)
T PRK11873         78 GETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALP----------------  141 (272)
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCC----------------
Confidence            5699999999998877666654  3589999999999999998753222247889999964420                


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                    ..+..||+|+.+..-       ...|   -...+++.+.+.|+|||.|++.
T Consensus       142 --------------~~~~~fD~Vi~~~v~-------~~~~---d~~~~l~~~~r~LkpGG~l~i~  182 (272)
T PRK11873        142 --------------VADNSVDVIISNCVI-------NLSP---DKERVFKEAFRVLKPGGRFAIS  182 (272)
T ss_pred             --------------CCCCceeEEEEcCcc-------cCCC---CHHHHHHHHHHHcCCCcEEEEE
Confidence                          134579999975210       0011   1367999999999999999873

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=98.45  E-value=3.7e-06  Score=88.87  Aligned_cols=149  Identities=13%  Similarity=0.118  Sum_probs=94.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhh-CCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQ-LDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~-~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.+|+|+|.++..+... ++.+|+++|+|+.+++.|++..... +.+++++.+|..+....               
T Consensus       252 ~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~-g~rV~fi~gDl~e~~l~---------------  315 (423)
T PRK14966        252 NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADL-GARVEFAHGSWFDTDMP---------------  315 (423)
T ss_pred             CCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-CCcEEEEEcchhccccc---------------
Confidence            358999999999999888765 4789999999999999999876432 23799999997653100               


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCC-CC------CCCCCCCC--------hHHHHHHHHHccCcCcEEEEEe
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARN-GT------SAPPVEFV--------RKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~-g~------s~Pp~~f~--------~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                    ...+||+|+.+..-..... .+      .-|...+.        -..+++.+.+.|+|+|.+++-+
T Consensus       316 --------------~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi  381 (423)
T PRK14966        316 --------------SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH  381 (423)
T ss_pred             --------------cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence                          2346999999652110000 00      01111111        2467777788999999998766


Q ss_pred             CCCCchHHHHHHHHHHHh-cCccEEEeecccceEEEEEE
Q 038592          407 IPPNRSFYDMLIQEFRDV-FQELYEIDVGNEENFVLIAT  444 (478)
Q Consensus       407 ~~~~~~~~~~v~~~l~~v-F~~v~~~~v~~~~N~Vl~a~  444 (478)
                      ....   .+.+.+.+++. |..+...+--.+..+++++.
T Consensus       382 G~~Q---~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~  417 (423)
T PRK14966        382 GFDQ---GAAVRGVLAENGFSGVETLPDLAGLDRVTLGK  417 (423)
T ss_pred             CccH---HHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEE
Confidence            4432   33445555543 54443333223345666664

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.43  E-value=1.6e-06  Score=93.26  Aligned_cols=106  Identities=20%  Similarity=0.154  Sum_probs=80.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.||+|.|.++..|.+.++.+|++||+++.+++.|++... ....+++++++|..+..                  
T Consensus       267 ~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~-~~~~~v~~~~~d~~~~~------------------  327 (475)
T PLN02336        267 GQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI-GRKCSVEFEVADCTKKT------------------  327 (475)
T ss_pred             CCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh-cCCCceEEEEcCcccCC------------------
Confidence            56999999999999998988778899999999999999987653 22357899999976531                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                  .++.+||+|+..-    ....+   +   -...+++.+++.|+|||.+++.....
T Consensus       328 ------------~~~~~fD~I~s~~----~l~h~---~---d~~~~l~~~~r~LkpgG~l~i~~~~~  372 (475)
T PLN02336        328 ------------YPDNSFDVIYSRD----TILHI---Q---DKPALFRSFFKWLKPGGKVLISDYCR  372 (475)
T ss_pred             ------------CCCCCEEEEEECC----ccccc---C---CHHHHHHHHHHHcCCCeEEEEEEecc
Confidence                        1346799999821    11011   1   23689999999999999999865443

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.43  E-value=1.6e-06  Score=80.40  Aligned_cols=99  Identities=20%  Similarity=0.208  Sum_probs=76.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.||+|.|.++..+.+. ..+|++||+|+.+++.+++.+.-  .++++++.+|+.++..                 
T Consensus        14 ~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~-----------------   73 (169)
T smart00650       14 GDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDL-----------------   73 (169)
T ss_pred             cCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCc-----------------
Confidence            458999999999999999887 67999999999999999998853  4689999999998731                 


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHc--cCcCcEEEEEeC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLI--LSDFGIFVMNVI  407 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~--L~~~Gilv~N~~  407 (478)
                                   .+..||.|+.+            ||-+. +.+.+..+.+.  +.++|++++...
T Consensus        74 -------------~~~~~d~vi~n------------~Py~~-~~~~i~~~l~~~~~~~~~~l~~q~e  114 (169)
T smart00650       74 -------------PKLQPYKVVGN------------LPYNI-STPILFKLLEEPPAFRDAVLMVQKE  114 (169)
T ss_pred             -------------cccCCCEEEEC------------CCccc-HHHHHHHHHhcCCCcceEEEEEEHH
Confidence                         23368999884            34443 34555555543  347899998764

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=98.42  E-value=1.8e-06  Score=84.83  Aligned_cols=101  Identities=17%  Similarity=0.174  Sum_probs=76.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      +.+||.+|+|.|.++..+.+. +.+|+++|+++.+++.|++.+.     ...++++|+.+.-                  
T Consensus        43 ~~~vLDiGcG~G~~~~~l~~~-~~~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~~~------------------   98 (251)
T PRK10258         43 FTHVLDAGCGPGWMSRYWRER-GSQVTALDLSPPMLAQARQKDA-----ADHYLAGDIESLP------------------   98 (251)
T ss_pred             CCeEEEeeCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCC-----CCCEEEcCcccCc------------------
Confidence            578999999999999888764 6799999999999999998753     2457788875431                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                  ..+.+||+|+....-.      .++    .-..++..+.+.|+|||.+++.....
T Consensus        99 ------------~~~~~fD~V~s~~~l~------~~~----d~~~~l~~~~~~Lk~gG~l~~~~~~~  143 (251)
T PRK10258         99 ------------LATATFDLAWSNLAVQ------WCG----NLSTALRELYRVVRPGGVVAFTTLVQ  143 (251)
T ss_pred             ------------CCCCcEEEEEECchhh------hcC----CHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence                        1356799999742110      011    13689999999999999999876554

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.42  E-value=7.8e-07  Score=85.72  Aligned_cols=102  Identities=15%  Similarity=0.103  Sum_probs=76.5

Q ss_pred             CeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          264 PKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       264 ~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ++||.||+|.|.++..+.+.. +.+|+++|+++.+++.|++.+.-. .+++++++.+|..+..                 
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~-----------------   63 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP-----------------   63 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCC-----------------
Confidence            379999999999888888765 689999999999999999876422 2467899998864321                 


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                    ...+||+|+.--  .     +.+.+   -...+|+.+++.|+|||.+++.-
T Consensus        64 --------------~~~~fD~I~~~~--~-----l~~~~---~~~~~l~~~~~~LkpgG~l~i~~  104 (224)
T smart00828       64 --------------FPDTYDLVFGFE--V-----IHHIK---DKMDLFSNISRHLKDGGHLVLAD  104 (224)
T ss_pred             --------------CCCCCCEeehHH--H-----HHhCC---CHHHHHHHHHHHcCCCCEEEEEE
Confidence                          134799998621  0     11111   13789999999999999998754

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.40  E-value=4.2e-06  Score=89.09  Aligned_cols=136  Identities=15%  Similarity=0.131  Sum_probs=93.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCC-CCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLED-GEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~-d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.+|+|.|+.+..+.+.. +.+|+++|+++..++.+++.+.... +.++.+..+|+......              
T Consensus       239 g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~--------------  304 (426)
T TIGR00563       239 EETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQW--------------  304 (426)
T ss_pred             CCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccc--------------
Confidence            4699999999999998888876 4799999999999999987753211 12334456665432100              


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCC-CCCCCCC-------------ChHHHHHHHHHccCcCcEEEEEe
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGT-SAPPVEF-------------VRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~-s~Pp~~f-------------~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                    ....+||.|++|+..+..  |+ .--|.-.             +..++|..+.+.|+|||.+++.+
T Consensus       305 --------------~~~~~fD~VllDaPcSg~--G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvyst  368 (426)
T TIGR00563       305 --------------AENEQFDRILLDAPCSAT--GVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYAT  368 (426)
T ss_pred             --------------ccccccCEEEEcCCCCCC--cccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence                          024579999999854421  22 1112210             24789999999999999999988


Q ss_pred             CCCCchHHHHHHHHHHHhcCcc
Q 038592          407 IPPNRSFYDMLIQEFRDVFQEL  428 (478)
Q Consensus       407 ~~~~~~~~~~v~~~l~~vF~~v  428 (478)
                      .+-+++--..+++.+.+-++..
T Consensus       369 cs~~~~Ene~~v~~~l~~~~~~  390 (426)
T TIGR00563       369 CSVLPEENSEQIKAFLQEHPDF  390 (426)
T ss_pred             CCCChhhCHHHHHHHHHhCCCC
Confidence            8775554555666666666653

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.40  E-value=1.9e-06  Score=88.59  Aligned_cols=98  Identities=19%  Similarity=0.178  Sum_probs=73.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCC--CEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQLD--FEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~--~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.||+|.|.++..+.+..+  ..|++||+++.+++.|++.+....-++++++.+|+.+.+.+              
T Consensus        81 g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~--------------  146 (322)
T PRK13943         81 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPE--------------  146 (322)
T ss_pred             CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccc--------------
Confidence            46999999999999988887653  47999999999999999865432235689999998766422              


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                      ...||+|+++..       +         .+....+.+.|++||.+++.+
T Consensus       147 ----------------~~~fD~Ii~~~g-------~---------~~ip~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        147 ----------------FAPYDVIFVTVG-------V---------DEVPETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             ----------------cCCccEEEECCc-------h---------HHhHHHHHHhcCCCCEEEEEe
Confidence                            246999999631       1         112334677899999988754

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=98.39  E-value=2.5e-06  Score=89.70  Aligned_cols=102  Identities=21%  Similarity=0.337  Sum_probs=77.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.||+|.|.++.++.+.++.+|++||+++++++.|++...   +..+++..+|..+.                   
T Consensus       168 g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~---~l~v~~~~~D~~~l-------------------  225 (383)
T PRK11705        168 GMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA---GLPVEIRLQDYRDL-------------------  225 (383)
T ss_pred             CCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc---cCeEEEEECchhhc-------------------
Confidence            46999999999999999988778899999999999999998763   23478888886432                   


Q ss_pred             cccCCCccCCCCCCCCceeEEEEe-CCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVD-LDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivD-v~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                    ..+||+|+.- ++.  .   +  ++.  .-..+++.+++.|+|||.+++.....
T Consensus       226 --------------~~~fD~Ivs~~~~e--h---v--g~~--~~~~~l~~i~r~LkpGG~lvl~~i~~  270 (383)
T PRK11705        226 --------------NGQFDRIVSVGMFE--H---V--GPK--NYRTYFEVVRRCLKPDGLFLLHTIGS  270 (383)
T ss_pred             --------------CCCCCEEEEeCchh--h---C--ChH--HHHHHHHHHHHHcCCCcEEEEEEccC
Confidence                          2469999751 110  0   0  011  12579999999999999999876543

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=98.39  E-value=1.3e-06  Score=84.81  Aligned_cols=104  Identities=17%  Similarity=0.174  Sum_probs=74.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC------------CCCCeEEEEchHHHHHHHHHhh
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE------------DGEFLQVSVGDAIEFLEKLARQ  330 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~------------~d~rl~v~v~Dg~~~l~~~~~~  330 (478)
                      ..+||++|+|.|.-+.+|+++ +.+|++||++|..++.|.+.-++.            ...+++++++|..++-..    
T Consensus        35 ~~rvLd~GCG~G~da~~LA~~-G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~----  109 (213)
T TIGR03840        35 GARVFVPLCGKSLDLAWLAEQ-GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA----  109 (213)
T ss_pred             CCeEEEeCCCchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc----
Confidence            469999999999999999875 889999999999999875544432            235788999999876211    


Q ss_pred             hcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          331 IVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                               ...+||.|+--..       +.+.|+. ....+++.++++|+|||.+++
T Consensus       110 -------------------------~~~~fD~i~D~~~-------~~~l~~~-~R~~~~~~l~~lLkpgG~~ll  150 (213)
T TIGR03840       110 -------------------------DLGPVDAVYDRAA-------LIALPEE-MRQRYAAHLLALLPPGARQLL  150 (213)
T ss_pred             -------------------------cCCCcCEEEechh-------hccCCHH-HHHHHHHHHHHHcCCCCeEEE
Confidence                                     1346888854110       1112222 346799999999999996443

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.38  E-value=3.1e-08  Score=83.27  Aligned_cols=95  Identities=25%  Similarity=0.330  Sum_probs=57.4

Q ss_pred             EEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCC---CCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          267 LCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDG---EFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       267 LvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d---~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      |.||+|.|.+...+.+.. ..+++++|++|.+++.|++.+.-...   .++++...|..+.                   
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~-------------------   61 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDY-------------------   61 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---C-------------------
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhc-------------------
Confidence            689999999998888875 68999999999999888877643222   2333333333322                   


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEE
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIF  402 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gil  402 (478)
                                  ...++||+|+.=  +.     +..-+   .-.++++++++.|+|||+|
T Consensus        62 ------------~~~~~fD~V~~~--~v-----l~~l~---~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   62 ------------DPPESFDLVVAS--NV-----LHHLE---DIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             ------------CC----SEEEEE---T-----TS--S----HHHHHHHHTTT-TSS-EE
T ss_pred             ------------ccccccceehhh--hh-----Hhhhh---hHHHHHHHHHHHcCCCCCC
Confidence                        123589999982  11     11111   3378999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=98.38  E-value=2.6e-07  Score=91.11  Aligned_cols=102  Identities=22%  Similarity=0.275  Sum_probs=73.6

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC--CCC----CeEEEEchHHHHHHHHHhhhcCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE--DGE----FLQVSVGDAIEFLEKLARQIVGKNP  336 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~--~d~----rl~v~v~Dg~~~l~~~~~~~~~~~~  336 (478)
                      ..+||.+|||||.|+.-|.+. +..|+++|+.++++++|+++-...  .+.    |++..+.|+-.              
T Consensus        90 g~~ilDvGCGgGLLSepLArl-ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~--------------  154 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARL-GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEG--------------  154 (282)
T ss_pred             CceEEEeccCccccchhhHhh-CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhh--------------
Confidence            367999999999999888764 799999999999999999994332  111    23333333322              


Q ss_pred             CCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC-ChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          337 DSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF-VRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f-~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                         ...+||+|++-    +..       ++. .-++|+..+.++|+|+|.+++-...|
T Consensus       155 -------------------~~~~fDaVvcs----evl-------eHV~dp~~~l~~l~~~lkP~G~lfittinr  198 (282)
T KOG1270|consen  155 -------------------LTGKFDAVVCS----EVL-------EHVKDPQEFLNCLSALLKPNGRLFITTINR  198 (282)
T ss_pred             -------------------cccccceeeeH----HHH-------HHHhCHHHHHHHHHHHhCCCCceEeeehhh
Confidence                               23459999981    110       111 12789999999999999999887776

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.37  E-value=5.2e-06  Score=79.01  Aligned_cols=107  Identities=22%  Similarity=0.114  Sum_probs=78.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCC-CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLED-GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~-d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.+++|+|+++..+......+|++||+|+..++.+++.+.... .++++++.+|+.++++....            
T Consensus        50 g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~------------  117 (189)
T TIGR00095        50 GAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAK------------  117 (189)
T ss_pred             CCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhc------------
Confidence            46899999999999988887644599999999999999998764322 34799999999999865311            


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCC-CChHHHHHHHHH--ccCcCcEEEEEeC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVE-FVRKDVLLAARL--ILSDFGIFVMNVI  407 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~-f~~~efl~~~~~--~L~~~Gilv~N~~  407 (478)
                                    ....||+|++|-            |-. -...+.++.+.+  .|+++|++++-..
T Consensus       118 --------------~~~~~dvv~~DP------------Py~~~~~~~~l~~l~~~~~l~~~~iiv~E~~  160 (189)
T TIGR00095       118 --------------KPTFDNVIYLDP------------PFFNGALQALLELCENNWILEDTVLIVVEED  160 (189)
T ss_pred             --------------cCCCceEEEECc------------CCCCCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence                          223589999963            211 123455555544  6899999987544

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.37  E-value=2.9e-06  Score=81.69  Aligned_cols=103  Identities=25%  Similarity=0.262  Sum_probs=79.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      ..+||.+|+|.|.++..+....  ..+++++|+++.+++.|++.+... .+++++++.+|..+..               
T Consensus        52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---------------  116 (239)
T PRK00216         52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP---------------  116 (239)
T ss_pred             CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC---------------
Confidence            4699999999999998888876  489999999999999999988532 2467899999986642               


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                     .....||+|++...-.       ..+   -...+|+.+.+.|++||.+++.
T Consensus       117 ---------------~~~~~~D~I~~~~~l~-------~~~---~~~~~l~~~~~~L~~gG~li~~  157 (239)
T PRK00216        117 ---------------FPDNSFDAVTIAFGLR-------NVP---DIDKALREMYRVLKPGGRLVIL  157 (239)
T ss_pred             ---------------CCCCCccEEEEecccc-------cCC---CHHHHHHHHHHhccCCcEEEEE
Confidence                           1345799998742111       111   2368999999999999988764

>PTZ00146 fibrillarin; Provisional

Probab=98.36  E-value=1.1e-05  Score=81.63  Aligned_cols=140  Identities=19%  Similarity=0.229  Sum_probs=92.7

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChH----HHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEV----VLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNP  336 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~----Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~  336 (478)
                      ..+||.+|+|.|.++..+....  ...|.+||+++.    ++++|++.      +++..+++|+..-. ...        
T Consensus       133 G~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r------~NI~~I~~Da~~p~-~y~--------  197 (293)
T PTZ00146        133 GSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR------PNIVPIIEDARYPQ-KYR--------  197 (293)
T ss_pred             CCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc------CCCEEEECCccChh-hhh--------
Confidence            3589999999999999999986  369999999997    44555432      56899999986421 100        


Q ss_pred             CCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC------C
Q 038592          337 DSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP------N  410 (478)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~------~  410 (478)
                                        .....+|+|++|+...          .  ....++.++++.|+|+|.|++-+-.+      +
T Consensus       198 ------------------~~~~~vDvV~~Dva~p----------d--q~~il~~na~r~LKpGG~~vI~ika~~id~g~~  247 (293)
T PTZ00146        198 ------------------MLVPMVDVIFADVAQP----------D--QARIVALNAQYFLKNGGHFIISIKANCIDSTAK  247 (293)
T ss_pred             ------------------cccCCCCEEEEeCCCc----------c--hHHHHHHHHHHhccCCCEEEEEEeccccccCCC
Confidence                              0234699999997421          1  12456678999999999999843222      1


Q ss_pred             c-hHHHHHHHHHHHh-cCccEEEeec--ccceEEEEEEcCC
Q 038592          411 R-SFYDMLIQEFRDV-FQELYEIDVG--NEENFVLIATGLS  447 (478)
Q Consensus       411 ~-~~~~~v~~~l~~v-F~~v~~~~v~--~~~N~Vl~a~~~~  447 (478)
                      + +.+..-++.|++. |..+-.+.++  +....++++...+
T Consensus       248 pe~~f~~ev~~L~~~GF~~~e~v~L~Py~~~h~~v~~~~~~  288 (293)
T PTZ00146        248 PEVVFASEVQKLKKEGLKPKEQLTLEPFERDHAVVIGVYRP  288 (293)
T ss_pred             HHHHHHHHHHHHHHcCCceEEEEecCCccCCcEEEEEEEcC
Confidence            1 2233335778887 8865555543  3345556655433

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=98.36  E-value=2e-06  Score=86.84  Aligned_cols=101  Identities=16%  Similarity=0.160  Sum_probs=74.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      +.+||.+|+|.|..+.+|.+. +.+|++||+++.+++.|++..... .-++++.+.|..+.-                  
T Consensus       121 ~~~vLDlGcG~G~~~~~la~~-g~~V~avD~s~~ai~~~~~~~~~~-~l~v~~~~~D~~~~~------------------  180 (287)
T PRK12335        121 PGKALDLGCGQGRNSLYLALL-GFDVTAVDINQQSLENLQEIAEKE-NLNIRTGLYDINSAS------------------  180 (287)
T ss_pred             CCCEEEeCCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHc-CCceEEEEechhccc------------------
Confidence            469999999999999998875 689999999999999998775432 225788888865431                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                   ..++||+|+.-..-      +..++.  .-..+++.+++.|+|||.+++
T Consensus       181 -------------~~~~fD~I~~~~vl------~~l~~~--~~~~~l~~~~~~LkpgG~~l~  221 (287)
T PRK12335        181 -------------IQEEYDFILSTVVL------MFLNRE--RIPAIIKNMQEHTNPGGYNLI  221 (287)
T ss_pred             -------------ccCCccEEEEcchh------hhCCHH--HHHHHHHHHHHhcCCCcEEEE
Confidence                         24579999973210      001111  236799999999999998655

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.35  E-value=4.2e-06  Score=81.18  Aligned_cols=106  Identities=20%  Similarity=0.213  Sum_probs=80.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.||+|.|.++..+.+. +.+++++|+++.+++.|++.+.... .+++++..|..++...                
T Consensus        49 ~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~----------------  110 (233)
T PRK05134         49 GKRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALESG-LKIDYRQTTAEELAAE----------------  110 (233)
T ss_pred             CCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHHHHHHHHHHHcC-CceEEEecCHHHhhhh----------------
Confidence            568999999999998888765 6789999999999999998764322 2578888888877532                


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                   ...+||+|++.-.       +.+-+   -..++++.+.+.|++||.+++....+
T Consensus       111 -------------~~~~fD~Ii~~~~-------l~~~~---~~~~~l~~~~~~L~~gG~l~v~~~~~  154 (233)
T PRK05134        111 -------------HPGQFDVVTCMEM-------LEHVP---DPASFVRACAKLVKPGGLVFFSTLNR  154 (233)
T ss_pred             -------------cCCCccEEEEhhH-------hhccC---CHHHHHHHHHHHcCCCcEEEEEecCC
Confidence                         3467999998321       00011   13678999999999999999877654

>PRK08317 hypothetical protein; Provisional

Probab=98.35  E-value=7.5e-06  Score=78.43  Aligned_cols=103  Identities=23%  Similarity=0.208  Sum_probs=77.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.+|+|.|.++..+....  ..+++++|+++.+++.|++... ...++++++.+|...+-                
T Consensus        20 ~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~-~~~~~~~~~~~d~~~~~----------------   82 (241)
T PRK08317         20 GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA-GLGPNVEFVRGDADGLP----------------   82 (241)
T ss_pred             CCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh-CCCCceEEEecccccCC----------------
Confidence            5799999999999998888765  4799999999999999998732 12457889988875431                


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                    .....||+|+....-.    .+   +   -...+++.+++.|+|||.+++-.
T Consensus        83 --------------~~~~~~D~v~~~~~~~----~~---~---~~~~~l~~~~~~L~~gG~l~~~~  124 (241)
T PRK08317         83 --------------FPDGSFDAVRSDRVLQ----HL---E---DPARALAEIARVLRPGGRVVVLD  124 (241)
T ss_pred             --------------CCCCCceEEEEechhh----cc---C---CHHHHHHHHHHHhcCCcEEEEEe
Confidence                          1346799999853110    01   1   13679999999999999988643

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.32  E-value=4.5e-06  Score=86.41  Aligned_cols=99  Identities=17%  Similarity=0.015  Sum_probs=75.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||+|+|.++..+.+.. +.++++||+++.+++.|++.+.   .++++++.+|+.+.-                 
T Consensus       114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~lp-----------------  173 (340)
T PLN02490        114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDLP-----------------  173 (340)
T ss_pred             CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhCC-----------------
Confidence            4699999999999888777765 5799999999999999998764   346889999986531                 


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                   ..+..||+|+...    .   +..-+   -....++.+++.|+|||.+++
T Consensus       174 -------------~~~~sFDvVIs~~----~---L~~~~---d~~~~L~e~~rvLkPGG~LvI  213 (340)
T PLN02490        174 -------------FPTDYADRYVSAG----S---IEYWP---DPQRGIKEAYRVLKIGGKACL  213 (340)
T ss_pred             -------------CCCCceeEEEEcC----h---hhhCC---CHHHHHHHHHHhcCCCcEEEE
Confidence                         1356799998821    0   10011   125789999999999999876

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=98.32  E-value=9.6e-06  Score=81.95  Aligned_cols=127  Identities=20%  Similarity=0.247  Sum_probs=91.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.+|||.|.++..|.+.. ..+|+.||+|..-++.||+......-++..+..+|..+=+                 
T Consensus       159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v-----------------  221 (300)
T COG2813         159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV-----------------  221 (300)
T ss_pred             CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccc-----------------
Confidence            3499999999999999999886 6899999999999999999875433233367777765432                 


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE--EeCCCCchHHHHHHH
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM--NVIPPNRSFYDMLIQ  419 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~--N~~~~~~~~~~~v~~  419 (478)
                                     ..+||.||..-  +- ..|..  -..-..++++..++++|++||-|-+  |   +...    .-.
T Consensus       222 ---------------~~kfd~IisNP--Pf-h~G~~--v~~~~~~~~i~~A~~~L~~gGeL~iVan---~~l~----y~~  274 (300)
T COG2813         222 ---------------EGKFDLIISNP--PF-HAGKA--VVHSLAQEIIAAAARHLKPGGELWIVAN---RHLP----YEK  274 (300)
T ss_pred             ---------------cccccEEEeCC--Cc-cCCcc--hhHHHHHHHHHHHHHhhccCCEEEEEEc---CCCC----hHH
Confidence                           23899999942  11 11111  0112345999999999999997643  5   4333    245


Q ss_pred             HHHHhcCccEEEee
Q 038592          420 EFRDVFQELYEIDV  433 (478)
Q Consensus       420 ~l~~vF~~v~~~~v  433 (478)
                      .|+++|.++..+.-
T Consensus       275 ~L~~~Fg~v~~la~  288 (300)
T COG2813         275 KLKELFGNVEVLAK  288 (300)
T ss_pred             HHHHhcCCEEEEEe
Confidence            78999998887763

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=98.32  E-value=8.1e-06  Score=82.39  Aligned_cols=146  Identities=21%  Similarity=0.187  Sum_probs=91.2

Q ss_pred             eEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCccc
Q 038592          265 KALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACS  343 (478)
Q Consensus       265 ~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~  343 (478)
                      +||.||+|+|+++..+.+.. ..+|+++||+|.-+++|++......-.++.++.+|..+-                    
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~--------------------  172 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEP--------------------  172 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccc--------------------
Confidence            89999999999999999886 579999999999999999775322113455555544432                    


Q ss_pred             ccCCCccCCCCCCCCceeEEEEeCC---CCCCC-----------CCCCCCCCC-CChHHHHHHHHHccCcCcEEEEEeCC
Q 038592          344 LKDGNFLDNSDRVDNKFDVIMVDLD---SGDAR-----------NGTSAPPVE-FVRKDVLLAARLILSDFGIFVMNVIP  408 (478)
Q Consensus       344 ~~~~~~~~~~~~~~~~yDvIivDv~---s~d~~-----------~g~s~Pp~~-f~~~efl~~~~~~L~~~Gilv~N~~~  408 (478)
                                  -..+||+|+..--   ..+..           ..+.+-+.. -+-..|+..+.+.|+|+|++++-...
T Consensus       173 ------------~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~  240 (280)
T COG2890         173 ------------LRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL  240 (280)
T ss_pred             ------------cCCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC
Confidence                        2338999998421   00000           000000000 03467889999999999999987765


Q ss_pred             CCchHHHHHHHHHHHhc--CccEEEeecccceEEEEEEc
Q 038592          409 PNRSFYDMLIQEFRDVF--QELYEIDVGNEENFVLIATG  445 (478)
Q Consensus       409 ~~~~~~~~v~~~l~~vF--~~v~~~~v~~~~N~Vl~a~~  445 (478)
                      ...+.   +.+.+.+..  ..+...+-..+.+.++.+..
T Consensus       241 ~q~~~---v~~~~~~~~~~~~v~~~~d~~g~~rv~~~~~  276 (280)
T COG2890         241 TQGEA---VKALFEDTGFFEIVETLKDLFGRDRVVLAKL  276 (280)
T ss_pred             CcHHH---HHHHHHhcCCceEEEEEecCCCceEEEEEEe
Confidence            54433   333344333  33444444445566666654

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.32  E-value=2.6e-06  Score=83.19  Aligned_cols=127  Identities=20%  Similarity=0.327  Sum_probs=83.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCC-CEEEEEECChHHHHHHHHhcCCCCCCCe----EEEEchHHHHHHHHHhhhcCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQLD-FEVVGVEMDEVVLRVARQYFGLEDGEFL----QVSVGDAIEFLEKLARQIVGKNPD  337 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl----~v~v~Dg~~~l~~~~~~~~~~~~~  337 (478)
                      ++.+|.|||-.|.++..++++++ -.|.+||||+..++.|+++..+..+...    ...++++..|.-=. .++..+.+.
T Consensus        59 ~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is-~~~~a~~a~  137 (288)
T KOG2899|consen   59 PKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPIS-QRNEADRAF  137 (288)
T ss_pred             cceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccc-ccccccccc
Confidence            78999999999999999999985 6899999999999999998766533211    23345555553111 111112222


Q ss_pred             CCCccc---ccCC-------CccCCCCCCCCceeEEEE-------eCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCc
Q 038592          338 SFGACS---LKDG-------NFLDNSDRVDNKFDVIMV-------DLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFG  400 (478)
Q Consensus       338 ~~~~~~---~~~~-------~~~~~~~~~~~~yDvIiv-------Dv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~G  400 (478)
                      +.+.|.   ..++       |++   .....+||+|++       -+..+|.  |+         ..||+.+.++|.|||
T Consensus       138 t~~~p~n~~f~~~n~vle~~dfl---~~~~~~fDiIlcLSiTkWIHLNwgD~--GL---------~~ff~kis~ll~pgG  203 (288)
T KOG2899|consen  138 TTDFPDNVWFQKENYVLESDDFL---DMIQPEFDIILCLSITKWIHLNWGDD--GL---------RRFFRKISSLLHPGG  203 (288)
T ss_pred             cccCCcchhcccccEEEecchhh---hhccccccEEEEEEeeeeEecccccH--HH---------HHHHHHHHHhhCcCc
Confidence            222221   1111       122   135678999996       3333442  33         789999999999999


Q ss_pred             EEEE
Q 038592          401 IFVM  404 (478)
Q Consensus       401 ilv~  404 (478)
                      +||+
T Consensus       204 iLvv  207 (288)
T KOG2899|consen  204 ILVV  207 (288)
T ss_pred             EEEE
Confidence            9996

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=98.29  E-value=3.8e-06  Score=80.92  Aligned_cols=101  Identities=15%  Similarity=0.199  Sum_probs=84.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      +.+|..||||.|..+..|++.+ +..|+++|-|++|++.|++..     +++++..+|..+|                  
T Consensus        31 ~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-----p~~~f~~aDl~~w------------------   87 (257)
T COG4106          31 PRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-----PDATFEEADLRTW------------------   87 (257)
T ss_pred             cceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-----CCCceecccHhhc------------------
Confidence            6899999999999999999886 689999999999999998874     5789999999999                  


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                   .+....|+|+..+-=       .=-|.+   .+.|..+-..|.|||++.+++...
T Consensus        88 -------------~p~~~~dllfaNAvl-------qWlpdH---~~ll~rL~~~L~Pgg~LAVQmPdN  132 (257)
T COG4106          88 -------------KPEQPTDLLFANAVL-------QWLPDH---PELLPRLVSQLAPGGVLAVQMPDN  132 (257)
T ss_pred             -------------CCCCccchhhhhhhh-------hhcccc---HHHHHHHHHhhCCCceEEEECCCc
Confidence                         256789999875311       112444   789999999999999999999765

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=98.28  E-value=3e-06  Score=84.76  Aligned_cols=94  Identities=17%  Similarity=0.257  Sum_probs=71.7

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-C---CEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-D---FEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDS  338 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~---~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~  338 (478)
                      ..+||.+|+|+|.++..|.+.. .   ..|+++|+++.+++.|++.+     +++++.++|+.+.-              
T Consensus        86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~~~~~~~~d~~~lp--------------  146 (272)
T PRK11088         86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----PQVTFCVASSHRLP--------------  146 (272)
T ss_pred             CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----CCCeEEEeecccCC--------------
Confidence            4689999999999988887654 2   48999999999999998864     45888999976531              


Q ss_pred             CCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCC
Q 038592          339 FGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIP  408 (478)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~  408 (478)
                                      ..+..||+|+.- ++         |       .+++.+++.|+|||.|++-...
T Consensus       147 ----------------~~~~sfD~I~~~-~~---------~-------~~~~e~~rvLkpgG~li~~~p~  183 (272)
T PRK11088        147 ----------------FADQSLDAIIRI-YA---------P-------CKAEELARVVKPGGIVITVTPG  183 (272)
T ss_pred             ----------------CcCCceeEEEEe-cC---------C-------CCHHHHHhhccCCCEEEEEeCC
Confidence                            145689999861 11         1       2457789999999999975443

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.27  E-value=4.5e-06  Score=79.14  Aligned_cols=109  Identities=26%  Similarity=0.332  Sum_probs=80.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC-CCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL-EDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~-~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..++|.+=+|+|+++......-..+|+.||.|+..++..++.+.. ...++.+++.+|+..++.+...            
T Consensus        43 g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~------------  110 (183)
T PF03602_consen   43 GARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAK------------  110 (183)
T ss_dssp             T-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHH------------
T ss_pred             CCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcc------------
Confidence            469999999999999876665456999999999999999987642 2234799999999999987543            


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCC--hHHHHHHHH--HccCcCcEEEEEeCCC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFV--RKDVLLAAR--LILSDFGIFVMNVIPP  409 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~--~~efl~~~~--~~L~~~Gilv~N~~~~  409 (478)
                                    ...+||+|++|            ||-..-  -.+.++.+.  ..|+++|++++-....
T Consensus       111 --------------~~~~fDiIflD------------PPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~  156 (183)
T PF03602_consen  111 --------------KGEKFDIIFLD------------PPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK  156 (183)
T ss_dssp             --------------CTS-EEEEEE--------------STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred             --------------cCCCceEEEEC------------CCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence                          46789999997            444433  266788777  6899999999877655

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=98.27  E-value=2.9e-06  Score=82.59  Aligned_cols=102  Identities=18%  Similarity=0.144  Sum_probs=75.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC------------CCCCeEEEEchHHHHHHHHHhh
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE------------DGEFLQVSVGDAIEFLEKLARQ  330 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~------------~d~rl~v~v~Dg~~~l~~~~~~  330 (478)
                      ..+||++|+|.|.-+.+|.++ +.+|++||++|.-++.|.+.-++.            ...+++++++|..++-.+    
T Consensus        38 ~~rvL~~gCG~G~da~~LA~~-G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~----  112 (218)
T PRK13255         38 GSRVLVPLCGKSLDMLWLAEQ-GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA----  112 (218)
T ss_pred             CCeEEEeCCCChHhHHHHHhC-CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc----
Confidence            469999999999999999875 889999999999999875544432            246789999999887211    


Q ss_pred             hcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEE
Q 038592          331 IVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIF  402 (478)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gil  402 (478)
                                               ....||.|+-=.      .-+..||.  ....+++.+.++|+|||.+
T Consensus       113 -------------------------~~~~fd~v~D~~------~~~~l~~~--~R~~~~~~l~~lL~pgG~~  151 (218)
T PRK13255        113 -------------------------DLADVDAVYDRA------ALIALPEE--MRERYVQQLAALLPAGCRG  151 (218)
T ss_pred             -------------------------cCCCeeEEEehH------hHhhCCHH--HHHHHHHHHHHHcCCCCeE
Confidence                                     224688887411      01223333  3588999999999999853

>PLN02672 methionine S-methyltransferase

Probab=98.25  E-value=9.7e-06  Score=94.42  Aligned_cols=121  Identities=13%  Similarity=0.158  Sum_probs=86.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCC----------------CCCCeEEEEchHHHHHH
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLE----------------DGEFLQVSVGDAIEFLE  325 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~----------------~d~rl~v~v~Dg~~~l~  325 (478)
                      +.+||.+|+|.|.++..|.+.. ..+|++||++|..+++|++.....                ..+|++++.+|..+.+.
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~  198 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR  198 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence            3589999999999999998875 579999999999999998775321                12479999999988763


Q ss_pred             HHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCC---CCCCCCCCC------C---------CCCCCCh--
Q 038592          326 KLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLD---SGDARNGTS------A---------PPVEFVR--  385 (478)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~---s~d~~~g~s------~---------Pp~~f~~--  385 (478)
                      .                             ...+||+|+...-   .++. ..|+      .         |...+..  
T Consensus       199 ~-----------------------------~~~~fDlIVSNPPYI~~~e~-~~l~~eV~~~ep~~~~~~~~p~~AL~g~~  248 (1082)
T PLN02672        199 D-----------------------------NNIELDRIVGCIPQILNPNP-EAMSKLVTENASEEFLYSLSNYCALQGFV  248 (1082)
T ss_pred             c-----------------------------cCCceEEEEECCCcCCCcch-hhcChhhhhccccccccccCccccccCCC
Confidence            2                             2246999998431   1110 0110      0         1222222  


Q ss_pred             ---------HHHHHHHHHccCcCcEEEEEeCCCCchH
Q 038592          386 ---------KDVLLAARLILSDFGIFVMNVIPPNRSF  413 (478)
Q Consensus       386 ---------~efl~~~~~~L~~~Gilv~N~~~~~~~~  413 (478)
                               ...+..+.+.|+|||.+++++.....+.
T Consensus       249 ~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q~~~  285 (1082)
T PLN02672        249 EDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRPGQA  285 (1082)
T ss_pred             CCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHH
Confidence                     6677888889999999999998775543

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=98.23  E-value=3.4e-06  Score=85.65  Aligned_cols=130  Identities=20%  Similarity=0.291  Sum_probs=84.7

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCC-CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLED-GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~-d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.+|+|+|.|+....+.-..+|.++|+||..++.|++...+.. ..+++++  ...+                   
T Consensus       162 g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~-------------------  220 (295)
T PF06325_consen  162 GKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSED-------------------  220 (295)
T ss_dssp             TSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSC-------------------
T ss_pred             CCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eecc-------------------
Confidence            46999999999999988776534689999999999999999875432 2355553  1000                   


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHH
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEF  421 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l  421 (478)
                                   ....+||+|+..+...             .-......+.++|+|||.+++-=.-.  +..+.+.+.+
T Consensus       221 -------------~~~~~~dlvvANI~~~-------------vL~~l~~~~~~~l~~~G~lIlSGIl~--~~~~~v~~a~  272 (295)
T PF06325_consen  221 -------------LVEGKFDLVVANILAD-------------VLLELAPDIASLLKPGGYLILSGILE--EQEDEVIEAY  272 (295)
T ss_dssp             -------------TCCS-EEEEEEES-HH-------------HHHHHHHHCHHHEEEEEEEEEEEEEG--GGHHHHHHHH
T ss_pred             -------------cccccCCEEEECCCHH-------------HHHHHHHHHHHhhCCCCEEEEccccH--HHHHHHHHHH
Confidence                         1347899999976331             11456777888999999999733322  2345667777


Q ss_pred             HHhcCccEEEeecccceEEEEEE
Q 038592          422 RDVFQELYEIDVGNEENFVLIAT  444 (478)
Q Consensus       422 ~~vF~~v~~~~v~~~~N~Vl~a~  444 (478)
                      ++=   ..........+|+.+..
T Consensus       273 ~~g---~~~~~~~~~~~W~~l~~  292 (295)
T PF06325_consen  273 KQG---FELVEEREEGEWVALVF  292 (295)
T ss_dssp             HTT---EEEEEEEEETTEEEEEE
T ss_pred             HCC---CEEEEEEEECCEEEEEE
Confidence            542   22333334456766554

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.23  E-value=2.1e-05  Score=79.58  Aligned_cols=112  Identities=22%  Similarity=0.261  Sum_probs=76.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCC--CCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLED--GEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~--d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      .++||-+=+=+|+.+.+....-..+|+.||++...+++|++.+.+..  ..+++++.+|+++|++++.+           
T Consensus       124 gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~-----------  192 (286)
T PF10672_consen  124 GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKK-----------  192 (286)
T ss_dssp             TCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHH-----------
T ss_pred             CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhc-----------
Confidence            47999999999998876554323589999999999999999986542  36899999999999987432           


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC-Ch---HHHHHHHHHccCcCcEEEEEeCCC
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF-VR---KDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f-~~---~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                      ..+||+||+|..+=.        +..+ +.   .+.+..+.++|+|||++++-..+.
T Consensus       193 ----------------~~~fD~IIlDPPsF~--------k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~  241 (286)
T PF10672_consen  193 ----------------GGRFDLIILDPPSFA--------KSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH  241 (286)
T ss_dssp             ----------------TT-EEEEEE--SSEE--------SSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred             ----------------CCCCCEEEECCCCCC--------CCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence                            358999999843210        0111 22   345677788999999988655444

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PHA03412 putative methyltransferase; Provisional

Probab=98.23  E-value=7.2e-06  Score=80.60  Aligned_cols=105  Identities=16%  Similarity=0.157  Sum_probs=71.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC----CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL----DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDS  338 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~----~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~  338 (478)
                      ..+||.+|+|+|.++..+.+..    ..+|++||||+.++++|++.+     +++.++.+|...+-              
T Consensus        50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~~--------------  110 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-----PEATWINADALTTE--------------  110 (241)
T ss_pred             CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhccc--------------
Confidence            4699999999999998887642    469999999999999999764     35889999987641              


Q ss_pred             CCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCC-CCCC-CCCChHHHHHHHHHccCcCcEEEE
Q 038592          339 FGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGT-SAPP-VEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~-s~Pp-~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                       ...+||+||.+.-=....... ...+ .......+++.+.+++++|+ +|+
T Consensus       111 -----------------~~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~-~IL  160 (241)
T PHA03412        111 -----------------FDTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGT-FII  160 (241)
T ss_pred             -----------------ccCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCE-EEe
Confidence                             235799999954111000000 0001 11345668888888556555 443

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.23  E-value=9.8e-06  Score=77.88  Aligned_cols=107  Identities=22%  Similarity=0.234  Sum_probs=79.7

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      +.+||.+|+|.|.++..+.+. ..+++++|+++.+++.|++.+......++++..+|+.++..+                
T Consensus        46 ~~~vLdlG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~----------------  108 (224)
T TIGR01983        46 GLRVLDVGCGGGLLSEPLARL-GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEK----------------  108 (224)
T ss_pred             CCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcC----------------
Confidence            579999999999988877664 467999999999999999877532222688899998887422                


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                   ...+||+|++.-.-.    .+   +   -...+++.+++.|+++|.+++....+
T Consensus       109 -------------~~~~~D~i~~~~~l~----~~---~---~~~~~l~~~~~~L~~gG~l~i~~~~~  152 (224)
T TIGR01983       109 -------------GAKSFDVVTCMEVLE----HV---P---DPQAFIRACAQLLKPGGILFFSTINR  152 (224)
T ss_pred             -------------CCCCccEEEehhHHH----hC---C---CHHHHHHHHHHhcCCCcEEEEEecCC
Confidence                         236799999831100    01   1   12679999999999999998766544

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.22  E-value=2.6e-06  Score=85.19  Aligned_cols=43  Identities=26%  Similarity=0.383  Sum_probs=36.1

Q ss_pred             CCCeEEEEeCchh----HHHHHHHhhC------CCEEEEEECChHHHHHHHHh
Q 038592          262 FRPKALCVGVGGG----ALVSFLRTQL------DFEVVGVEMDEVVLRVARQY  304 (478)
Q Consensus       262 ~~~~VLvIGlGgG----~L~~~L~~~~------~~~V~~VEiDp~Vl~vA~~~  304 (478)
                      .+.+|+.+|||+|    ++++.|.+..      +.+|+++|+|+.+++.|++-
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~  151 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAG  151 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcC
Confidence            3579999999999    4787777753      36999999999999999873

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.22  E-value=1.1e-05  Score=85.81  Aligned_cols=102  Identities=22%  Similarity=0.148  Sum_probs=77.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.+|+|.|.++..+.+. ..+|++||+++.+++.|++.+....-.+++++.+|+.+++.+...             
T Consensus       293 ~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~-------------  358 (431)
T TIGR00479       293 EELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPW-------------  358 (431)
T ss_pred             CCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHh-------------
Confidence            468999999999999888875 358999999999999999887543335799999999998755211             


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                   .+..||+|++|.            |..=...++++.+.+ |++++++.+
T Consensus       359 -------------~~~~~D~vi~dP------------Pr~G~~~~~l~~l~~-l~~~~ivyv  394 (431)
T TIGR00479       359 -------------AGQIPDVLLLDP------------PRKGCAAEVLRTIIE-LKPERIVYV  394 (431)
T ss_pred             -------------cCCCCCEEEECc------------CCCCCCHHHHHHHHh-cCCCEEEEE
Confidence                         235699999973            322234778887664 888886554

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=98.22  E-value=1.2e-05  Score=79.22  Aligned_cols=108  Identities=20%  Similarity=0.183  Sum_probs=84.6

Q ss_pred             CCCCeEEEEeCchhHHHHHHHhhC-C------CEEEEEECChHHHHHHHHhc---CCCCCCCeEEEEchHHHHHHHHHhh
Q 038592          261 GFRPKALCVGVGGGALVSFLRTQL-D------FEVVGVEMDEVVLRVARQYF---GLEDGEFLQVSVGDAIEFLEKLARQ  330 (478)
Q Consensus       261 g~~~~VLvIGlGgG~L~~~L~~~~-~------~~V~~VEiDp~Vl~vA~~~F---g~~~d~rl~v~v~Dg~~~l~~~~~~  330 (478)
                      +...++|.+++|+|-++--+.++. .      .+|+++||+|.++.++++.-   ++..++++.++.+||.+.       
T Consensus        99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L-------  171 (296)
T KOG1540|consen   99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL-------  171 (296)
T ss_pred             CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC-------
Confidence            345799999999999887677664 3      69999999999999999877   777888999999999876       


Q ss_pred             hcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCC
Q 038592          331 IVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIP  408 (478)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~  408 (478)
                                             +.++..||+..+- +.-.     .|+.    -...++.+++.|+|||.|.+=-.+
T Consensus       172 -----------------------pFdd~s~D~yTia-fGIR-----N~th----~~k~l~EAYRVLKpGGrf~cLeFs  216 (296)
T KOG1540|consen  172 -----------------------PFDDDSFDAYTIA-FGIR-----NVTH----IQKALREAYRVLKPGGRFSCLEFS  216 (296)
T ss_pred             -----------------------CCCCCcceeEEEe-ccee-----cCCC----HHHHHHHHHHhcCCCcEEEEEEcc
Confidence                                   1257789998882 2211     2332    367999999999999999854333

>PRK05785 hypothetical protein; Provisional

Probab=98.22  E-value=1.8e-05  Score=77.24  Aligned_cols=104  Identities=19%  Similarity=0.229  Sum_probs=72.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      +.+||.||+|+|.++..|.+..+.+|++||++++|++.|++.-        ..+++|+.+.                   
T Consensus        52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~--------~~~~~d~~~l-------------------  104 (226)
T PRK05785         52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD--------DKVVGSFEAL-------------------  104 (226)
T ss_pred             CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc--------ceEEechhhC-------------------
Confidence            5699999999999998888776679999999999999998631        2456776543                   


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHH
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYD  415 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~  415 (478)
                                 +..+++||+|++-.       ++..-+   --+..++.+++.|+|. +.++-+..++..+.+
T Consensus       105 -----------p~~d~sfD~v~~~~-------~l~~~~---d~~~~l~e~~RvLkp~-~~ile~~~p~~~~~~  155 (226)
T PRK05785        105 -----------PFRDKSFDVVMSSF-------ALHASD---NIEKVIAEFTRVSRKQ-VGFIAMGKPDNVIKR  155 (226)
T ss_pred             -----------CCCCCCEEEEEecC-------hhhccC---CHHHHHHHHHHHhcCc-eEEEEeCCCCcHHHH
Confidence                       12567899999921       111011   2367999999999994 334434444433333

>PHA03411 putative methyltransferase; Provisional

Probab=98.21  E-value=1.8e-05  Score=79.51  Aligned_cols=110  Identities=16%  Similarity=0.172  Sum_probs=78.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.+|+|.|.++..+.... ..+|++||+++.+++.|++.+     ++++++.+|+.++.                 
T Consensus        65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~-----------------  122 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFE-----------------  122 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhc-----------------
Confidence            4689999999999988776654 579999999999999999864     36899999999874                 


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCC-C---CCCCCC-----CCCCC-hHHHHHHHHHccCcCcEEEEEeCC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDA-R---NGTSAP-----PVEFV-RKDVLLAARLILSDFGIFVMNVIP  408 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~-~---~g~s~P-----p~~f~-~~efl~~~~~~L~~~Gilv~N~~~  408 (478)
                                    ...+||+|+.+.-=... .   ..+..-     .-..+ -..|+..+...|+|+|.+.+-..+
T Consensus       123 --------------~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss  185 (279)
T PHA03411        123 --------------SNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSG  185 (279)
T ss_pred             --------------ccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEec
Confidence                          23579999995411100 0   000000     00111 267889999999999987766554

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=98.20  E-value=5e-06  Score=79.57  Aligned_cols=125  Identities=18%  Similarity=0.156  Sum_probs=89.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeE-EEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQ-VSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~-v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ...||.+|+|+|.-=.|.-..+..+||.+|-+|.|-++|.+-+.-...+.+. ++++||.+..+=               
T Consensus        77 K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l---------------  141 (252)
T KOG4300|consen   77 KGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQL---------------  141 (252)
T ss_pred             ccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCccc---------------
Confidence            5678999999999666655445689999999999999999887654445565 899999876321               


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHH
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEF  421 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l  421 (478)
                                    ++.+||+|+.-+-        -|.-+  -..+.|++++++|+|||.+++-=...  ..+......+
T Consensus       142 --------------~d~s~DtVV~Tlv--------LCSve--~~~k~L~e~~rlLRpgG~iifiEHva--~~y~~~n~i~  195 (252)
T KOG4300|consen  142 --------------ADGSYDTVVCTLV--------LCSVE--DPVKQLNEVRRLLRPGGRIIFIEHVA--GEYGFWNRIL  195 (252)
T ss_pred             --------------ccCCeeeEEEEEE--------EeccC--CHHHHHHHHHHhcCCCcEEEEEeccc--ccchHHHHHH
Confidence                          5778999997431        11111  23789999999999999998633222  2234445556


Q ss_pred             HHhcCcc
Q 038592          422 RDVFQEL  428 (478)
Q Consensus       422 ~~vF~~v  428 (478)
                      ++++..+
T Consensus       196 q~v~ep~  202 (252)
T KOG4300|consen  196 QQVAEPL  202 (252)
T ss_pred             HHHhchh
Confidence            6666643

>PRK06922 hypothetical protein; Provisional

Probab=98.20  E-value=8.4e-06  Score=90.07  Aligned_cols=113  Identities=22%  Similarity=0.257  Sum_probs=78.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhh-CCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQ-LDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~-~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      +.+||.||||+|.++..+.+. ++.+|+++|+++.+++.|++.... ...+++++++|+.++-..               
T Consensus       419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~-~g~~ie~I~gDa~dLp~~---------------  482 (677)
T PRK06922        419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQN-EGRSWNVIKGDAINLSSS---------------  482 (677)
T ss_pred             CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhh-cCCCeEEEEcchHhCccc---------------
Confidence            579999999999988777765 478999999999999999876532 234688899999874211               


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeC-----CCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDL-----DSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv-----~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                   ..+..||+|+...     ++--+..+...++.  .-..+|+.+++.|+|||.+++.-
T Consensus       483 -------------fedeSFDvVVsn~vLH~L~syIp~~g~~f~~e--dl~kiLreI~RVLKPGGrLII~D  537 (677)
T PRK06922        483 -------------FEKESVDTIVYSSILHELFSYIEYEGKKFNHE--VIKKGLQSAYEVLKPGGRIIIRD  537 (677)
T ss_pred             -------------cCCCCEEEEEEchHHHhhhhhcccccccccHH--HHHHHHHHHHHHcCCCcEEEEEe
Confidence                         1356799998731     10000000000000  23789999999999999999853

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=98.19  E-value=1.6e-05  Score=81.45  Aligned_cols=99  Identities=15%  Similarity=0.106  Sum_probs=72.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      +.+||.+|+|.|.++..+.+. +.+|++||+++.+++.|++......-++++++.+|+.++...                
T Consensus       174 ~~~VLDl~cG~G~~sl~la~~-~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~----------------  236 (315)
T PRK03522        174 PRSMWDLFCGVGGFGLHCATP-GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA----------------  236 (315)
T ss_pred             CCEEEEccCCCCHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh----------------
Confidence            468999999999999988874 579999999999999999876432225799999999998643                


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                   ...+||+|++|.            |..=+..+.++.+.+ +++++++.+
T Consensus       237 -------------~~~~~D~Vv~dP------------Pr~G~~~~~~~~l~~-~~~~~ivyv  272 (315)
T PRK03522        237 -------------QGEVPDLVLVNP------------PRRGIGKELCDYLSQ-MAPRFILYS  272 (315)
T ss_pred             -------------cCCCCeEEEECC------------CCCCccHHHHHHHHH-cCCCeEEEE
Confidence                         234699999972            322133455555444 677765553

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=98.19  E-value=1.4e-05  Score=76.95  Aligned_cols=99  Identities=21%  Similarity=0.290  Sum_probs=72.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCC-CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLED-GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~-d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||+|.|.++..+... +.+|++||+++++++.|++.+.... ..++.+.++|..+.                  
T Consensus        56 ~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~------------------  116 (219)
T TIGR02021        56 GKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL------------------  116 (219)
T ss_pred             CCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC------------------
Confidence            579999999999999988765 5699999999999999998875332 24789999997643                  


Q ss_pred             ccccCCCccCCCCCCCCceeEEEE-eCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMV-DLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIiv-Dv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                    . .+||+|+. ++..       ..|+..  -..+++.+++.+++++++.+
T Consensus       117 --------------~-~~fD~ii~~~~l~-------~~~~~~--~~~~l~~i~~~~~~~~~i~~  156 (219)
T TIGR02021       117 --------------C-GEFDIVVCMDVLI-------HYPASD--MAKALGHLASLTKERVIFTF  156 (219)
T ss_pred             --------------C-CCcCEEEEhhHHH-------hCCHHH--HHHHHHHHHHHhCCCEEEEE
Confidence                          2 57999987 2211       012211  25678888888887665554

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=98.17  E-value=1.4e-05  Score=81.05  Aligned_cols=133  Identities=22%  Similarity=0.264  Sum_probs=86.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCC-CeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGE-FLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~-rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      +.+||.+|+|+|.|+....+.-..+|.++|+||.-+++|++..-+..-+ ..++-..+..+.                  
T Consensus       163 g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~------------------  224 (300)
T COG2264         163 GKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEV------------------  224 (300)
T ss_pred             CCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhh------------------
Confidence            6899999999999998777653468999999999999999987543211 111222222221                  


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHH
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEF  421 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l  421 (478)
                                   ....+||+|+..+-..             .-..+...++++|+|||.+++-=+-.  +..+++.+.+
T Consensus       225 -------------~~~~~~DvIVANILA~-------------vl~~La~~~~~~lkpgg~lIlSGIl~--~q~~~V~~a~  276 (300)
T COG2264         225 -------------PENGPFDVIVANILAE-------------VLVELAPDIKRLLKPGGRLILSGILE--DQAESVAEAY  276 (300)
T ss_pred             -------------cccCcccEEEehhhHH-------------HHHHHHHHHHHHcCCCceEEEEeehH--hHHHHHHHHH
Confidence                         1346899999976321             12578889999999999999643322  2245666666


Q ss_pred             -HHhcCccEEEeecccceEEEEEE
Q 038592          422 -RDVFQELYEIDVGNEENFVLIAT  444 (478)
Q Consensus       422 -~~vF~~v~~~~v~~~~N~Vl~a~  444 (478)
                       ++-|..+-...-   ..|+.+..
T Consensus       277 ~~~gf~v~~~~~~---~eW~~i~~  297 (300)
T COG2264         277 EQAGFEVVEVLER---EEWVAIVG  297 (300)
T ss_pred             HhCCCeEeEEEec---CCEEEEEE
Confidence             335654433332   34555544

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=98.17  E-value=5.6e-06  Score=79.07  Aligned_cols=103  Identities=20%  Similarity=0.267  Sum_probs=73.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      +.++|.||+|.|--+.||++. +..|++||+++.-++.+++.-.- ++=.++..+.|.-++-                  
T Consensus        31 ~g~~LDlgcG~GRNalyLA~~-G~~VtAvD~s~~al~~l~~~a~~-~~l~i~~~~~Dl~~~~------------------   90 (192)
T PF03848_consen   31 PGKALDLGCGEGRNALYLASQ-GFDVTAVDISPVALEKLQRLAEE-EGLDIRTRVADLNDFD------------------   90 (192)
T ss_dssp             SSEEEEES-TTSHHHHHHHHT-T-EEEEEESSHHHHHHHHHHHHH-TT-TEEEEE-BGCCBS------------------
T ss_pred             CCcEEEcCCCCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHhh-cCceeEEEEecchhcc------------------
Confidence            679999999999999999986 88999999999999877665321 1223888888855441                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                   ....||+|+..+-      -+..+|+  .-+..++++++.++|||++++..
T Consensus        91 -------------~~~~yD~I~st~v------~~fL~~~--~~~~i~~~m~~~~~pGG~~li~~  133 (192)
T PF03848_consen   91 -------------FPEEYDFIVSTVV------FMFLQRE--LRPQIIENMKAATKPGGYNLIVT  133 (192)
T ss_dssp             --------------TTTEEEEEEESS------GGGS-GG--GHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             -------------ccCCcCEEEEEEE------eccCCHH--HHHHHHHHHHhhcCCcEEEEEEE
Confidence                         2457999987431      1222333  33779999999999999988754

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.16  E-value=5.2e-05  Score=81.73  Aligned_cols=134  Identities=15%  Similarity=0.192  Sum_probs=97.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.++.|-|+-+..|...+  ...|+++|+++.-++..++.+.--.-.++.+...|+..+-+.              
T Consensus       114 g~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~--------------  179 (470)
T PRK11933        114 PQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAA--------------  179 (470)
T ss_pred             CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhh--------------
Confidence            4699999999999888888876  369999999999998887654321224588999999876432              


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCC-CCCCCC-------------ChHHHHHHHHHccCcCcEEEEEe
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTS-APPVEF-------------VRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s-~Pp~~f-------------~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                     ....||.|++|+.++-.  ||. --|...             ++.+.|..+.+.|+|||++|.-+
T Consensus       180 ---------------~~~~fD~ILvDaPCSG~--G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST  242 (470)
T PRK11933        180 ---------------LPETFDAILLDAPCSGE--GTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST  242 (470)
T ss_pred             ---------------chhhcCeEEEcCCCCCC--cccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence                           23569999999976532  332 112211             35889999999999999998877


Q ss_pred             CCCCchHHHHHHHHHHHhcCc
Q 038592          407 IPPNRSFYDMLIQEFRDVFQE  427 (478)
Q Consensus       407 ~~~~~~~~~~v~~~l~~vF~~  427 (478)
                      .+-+++--+.+++.+.+-|+.
T Consensus       243 CT~~~eENE~vV~~~L~~~~~  263 (470)
T PRK11933        243 CTLNREENQAVCLWLKETYPD  263 (470)
T ss_pred             CCCCHHHHHHHHHHHHHHCCC
Confidence            776666556666666555654

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.15  E-value=9.1e-06  Score=77.79  Aligned_cols=130  Identities=18%  Similarity=0.253  Sum_probs=92.3

Q ss_pred             CeEEEEeCchhHHHHHHHhh-CCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          264 PKALCVGVGGGALVSFLRTQ-LDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       264 ~~VLvIGlGgG~L~~~L~~~-~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      +-+|.||+|.|.....++.. ++..+.+||+....+..|.+......-+++.++.+||..++....              
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~--------------   84 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLF--------------   84 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHS--------------
T ss_pred             CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcc--------------
Confidence            37899999999877666665 689999999999999988766543345789999999999998752              


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHHH
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEFR  422 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l~  422 (478)
                                   .+...|-|.+--.++.+..-.  --..+++++|+..+.+.|++||.+.  +.+.+.+....+++.+.
T Consensus        85 -------------~~~~v~~i~i~FPDPWpK~rH--~krRl~~~~fl~~~~~~L~~gG~l~--~~TD~~~y~~~~~~~~~  147 (195)
T PF02390_consen   85 -------------PPGSVDRIYINFPDPWPKKRH--HKRRLVNPEFLELLARVLKPGGELY--FATDVEEYAEWMLEQFE  147 (195)
T ss_dssp             -------------TTTSEEEEEEES-----SGGG--GGGSTTSHHHHHHHHHHEEEEEEEE--EEES-HHHHHHHHHHHH
T ss_pred             -------------cCCchheEEEeCCCCCcccch--hhhhcCCchHHHHHHHHcCCCCEEE--EEeCCHHHHHHHHHHHH
Confidence                         356799999954333221000  0134899999999999999999886  44455677777777777


Q ss_pred             Hh
Q 038592          423 DV  424 (478)
Q Consensus       423 ~v  424 (478)
                      +.
T Consensus       148 ~~  149 (195)
T PF02390_consen  148 ES  149 (195)
T ss_dssp             HH
T ss_pred             hc
Confidence            74

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=98.14  E-value=4.7e-05  Score=73.32  Aligned_cols=122  Identities=19%  Similarity=0.204  Sum_probs=81.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      +.+||.||+|.|.++..|.+.. +.++++||+++.+++.|++.+     ++++++.+|+.+.                  
T Consensus        44 ~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~~------------------  100 (204)
T TIGR03587        44 IASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFDP------------------  100 (204)
T ss_pred             CCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccCC------------------
Confidence            5689999999999999998874 689999999999999999875     3467888886652                  


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCC-----------
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPN-----------  410 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~-----------  410 (478)
                                   ..+.+||+|+...    ....+  +|.  .-..+++.+.+.++ +-+++.....++           
T Consensus       101 -------------~~~~sfD~V~~~~----vL~hl--~p~--~~~~~l~el~r~~~-~~v~i~e~~~~~~~~~~y~~~~~  158 (204)
T TIGR03587       101 -------------FKDNFFDLVLTKG----VLIHI--NPD--NLPTAYRELYRCSN-RYILIAEYYNPSPVEISYRGNSG  158 (204)
T ss_pred             -------------CCCCCEEEEEECC----hhhhC--CHH--HHHHHHHHHHhhcC-cEEEEEEeeCCCceeeeeeCCcc
Confidence                         1456899999721    10011  122  22567788888774 244454543321           


Q ss_pred             chHHHHHHHHHHHhcCccE
Q 038592          411 RSFYDMLIQEFRDVFQELY  429 (478)
Q Consensus       411 ~~~~~~v~~~l~~vF~~v~  429 (478)
                      .-+.+.....+.+.|+.+-
T Consensus       159 ~~~~~d~~~~~~~~~~~l~  177 (204)
T TIGR03587       159 RLWKRDFAGEMMDRYPDLK  177 (204)
T ss_pred             hhhhhhHHHHHHHhCCcce
Confidence            1122334566667788643

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>TIGR03438 probable methyltransferase

Probab=98.13  E-value=2.2e-05  Score=79.88  Aligned_cols=112  Identities=14%  Similarity=0.077  Sum_probs=74.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      +.+||.+|+|+|..+..|.+.+  +.++++||++++|++.|++.+.-. ..-++..+++|..+.+.-...          
T Consensus        64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~----------  133 (301)
T TIGR03438        64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPE----------  133 (301)
T ss_pred             CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcc----------
Confidence            4689999999999998888876  589999999999999998875321 122456689998765422100          


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeC
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVI  407 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~  407 (478)
                                     .......+++.+  +.  . +.. +|.  -...||+.+++.|+|||.|++.+-
T Consensus       134 ---------------~~~~~~~~~~~g--s~--~-~~~-~~~--e~~~~L~~i~~~L~pgG~~lig~d  178 (301)
T TIGR03438       134 ---------------PAAGRRLGFFPG--ST--I-GNF-TPE--EAVAFLRRIRQLLGPGGGLLIGVD  178 (301)
T ss_pred             ---------------cccCCeEEEEec--cc--c-cCC-CHH--HHHHHHHHHHHhcCCCCEEEEecc
Confidence                           011123334332  11  1 111 122  135799999999999999997554

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.12  E-value=1.2e-05  Score=81.74  Aligned_cols=102  Identities=9%  Similarity=0.006  Sum_probs=74.1

Q ss_pred             CCeEEEEeCchhHHHHHHHhh-CCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQ-LDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~-~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.||+|.|.++..+.+. ++.+++++|+ |.+++.|++...-. ..+|++++.+|..+.                 
T Consensus       150 ~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~-----------------  211 (306)
T TIGR02716       150 VKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE-----------------  211 (306)
T ss_pred             CCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCC-----------------
Confidence            579999999999999888776 4789999998 78999998875422 246899999998642                 


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                     .-..+|+|++--       .+..-+.. ....+|+.+++.|+|||.+++.
T Consensus       212 ---------------~~~~~D~v~~~~-------~lh~~~~~-~~~~il~~~~~~L~pgG~l~i~  253 (306)
T TIGR02716       212 ---------------SYPEADAVLFCR-------ILYSANEQ-LSTIMCKKAFDAMRSGGRLLIL  253 (306)
T ss_pred             ---------------CCCCCCEEEeEh-------hhhcCChH-HHHHHHHHHHHhcCCCCEEEEE
Confidence                           112369988721       01000111 1256899999999999999764

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.12  E-value=1.2e-05  Score=86.40  Aligned_cols=104  Identities=14%  Similarity=0.071  Sum_probs=76.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.||+|.|.++..|.+. ..+|++||+++.+++.|++..+.  .++++++++|+...-..                
T Consensus        38 ~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~~~~--~~~i~~~~~d~~~~~~~----------------   98 (475)
T PLN02336         38 GKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESINGH--YKNVKFMCADVTSPDLN----------------   98 (475)
T ss_pred             CCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHhcc--CCceEEEEecccccccC----------------
Confidence            458999999999999998876 46999999999999998875442  35789999998542100                


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                  .+..+||+|++...-    .-+  ++.  .-.++++.+++.|+|||.+++.
T Consensus        99 ------------~~~~~fD~I~~~~~l----~~l--~~~--~~~~~l~~~~r~Lk~gG~l~~~  141 (475)
T PLN02336         99 ------------ISDGSVDLIFSNWLL----MYL--SDK--EVENLAERMVKWLKVGGYIFFR  141 (475)
T ss_pred             ------------CCCCCEEEEehhhhH----HhC--CHH--HHHHHHHHHHHhcCCCeEEEEE
Confidence                        145689999984210    000  110  1268999999999999999873

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.12  E-value=1.2e-05  Score=72.26  Aligned_cols=97  Identities=22%  Similarity=0.291  Sum_probs=69.6

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.||+|.|.++..+++. +.+++++|+++.+++.          .++.....+.....                  
T Consensus        23 ~~~vLDiGcG~G~~~~~l~~~-~~~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~------------------   73 (161)
T PF13489_consen   23 GKRVLDIGCGTGSFLRALAKR-GFEVTGVDISPQMIEK----------RNVVFDNFDAQDPP------------------   73 (161)
T ss_dssp             TSEEEEESSTTSHHHHHHHHT-TSEEEEEESSHHHHHH----------TTSEEEEEECHTHH------------------
T ss_pred             CCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHhh----------hhhhhhhhhhhhhh------------------
Confidence            679999999999999888665 5699999999999998          11222222222211                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPN  410 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~  410 (478)
                                  ..+.+||+|++-  ..-.  .+   +   --..+|+.++++|+|||++++....+.
T Consensus        74 ------------~~~~~fD~i~~~--~~l~--~~---~---d~~~~l~~l~~~LkpgG~l~~~~~~~~  119 (161)
T PF13489_consen   74 ------------FPDGSFDLIICN--DVLE--HL---P---DPEEFLKELSRLLKPGGYLVISDPNRD  119 (161)
T ss_dssp             ------------CHSSSEEEEEEE--SSGG--GS---S---HHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred             ------------ccccchhhHhhH--HHHh--hc---c---cHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence                        146789999983  1111  11   1   237899999999999999999887764

...

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=98.11  E-value=2.6e-05  Score=75.11  Aligned_cols=126  Identities=25%  Similarity=0.297  Sum_probs=95.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||-||.|.|....++++....+-..+|..|.|++..|++ |-.+.+++.+..+=-.+.+..+               
T Consensus       102 ggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~-gw~ek~nViil~g~WeDvl~~L---------------  165 (271)
T KOG1709|consen  102 GGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDW-GWREKENVIILEGRWEDVLNTL---------------  165 (271)
T ss_pred             CceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhc-ccccccceEEEecchHhhhccc---------------
Confidence            579999999999999999999888889999999999999987 4344566777666555555443               


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEE-EEeCCCCchHHHHHHHHH
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFV-MNVIPPNRSFYDMLIQEF  421 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv-~N~~~~~~~~~~~v~~~l  421 (478)
                                   .++.||-|+.|.++.-..          -..+|.+.+-++|+|+|+|. +|..+-+..++       
T Consensus       166 -------------~d~~FDGI~yDTy~e~yE----------dl~~~hqh~~rLLkP~gv~SyfNg~~~~~~~~-------  215 (271)
T KOG1709|consen  166 -------------PDKHFDGIYYDTYSELYE----------DLRHFHQHVVRLLKPEGVFSYFNGLGADNLMF-------  215 (271)
T ss_pred             -------------cccCcceeEeechhhHHH----------HHHHHHHHHhhhcCCCceEEEecCcccchhhh-------
Confidence                         466799999998864321          34789999999999999997 48887765432       


Q ss_pred             HHhcCccEEEeec
Q 038592          422 RDVFQELYEIDVG  434 (478)
Q Consensus       422 ~~vF~~v~~~~v~  434 (478)
                      -.++..+..+.+.
T Consensus       216 ~~vy~~lV~iev~  228 (271)
T KOG1709|consen  216 YDVYKILVMIEVA  228 (271)
T ss_pred             hhhhheeEEEEee
Confidence            2345555555543

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=98.11  E-value=1.9e-05  Score=81.15  Aligned_cols=101  Identities=17%  Similarity=0.114  Sum_probs=73.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHH---HhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVAR---QYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~---~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      .++||.||||.|.++..+.......|++||+++.++..++   ++.+  .+.+++++.+|..++-               
T Consensus       123 g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~--~~~~i~~~~~d~e~lp---------------  185 (322)
T PRK15068        123 GRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLG--NDQRAHLLPLGIEQLP---------------  185 (322)
T ss_pred             CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcC--CCCCeEEEeCCHHHCC---------------
Confidence            4799999999999998887765457999999999886432   3333  2457999998876540               


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                      ....||+|++=  .  ....+.      --..+|+.+++.|+|||.+++..
T Consensus       186 ----------------~~~~FD~V~s~--~--vl~H~~------dp~~~L~~l~~~LkpGG~lvl~~  226 (322)
T PRK15068        186 ----------------ALKAFDTVFSM--G--VLYHRR------SPLDHLKQLKDQLVPGGELVLET  226 (322)
T ss_pred             ----------------CcCCcCEEEEC--C--hhhccC------CHHHHHHHHHHhcCCCcEEEEEE
Confidence                            24679999971  0  000011      12679999999999999999864

>TIGR00452 methyltransferase, putative

Probab=98.11  E-value=2.5e-05  Score=80.11  Aligned_cols=101  Identities=15%  Similarity=0.073  Sum_probs=71.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHH---HHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRV---ARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~v---A~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      ..+||.||||+|.+...+.......|++||+++.++..   ++++++  .+.++.+...|..+.-               
T Consensus       122 g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~--~~~~v~~~~~~ie~lp---------------  184 (314)
T TIGR00452       122 GRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLD--NDKRAILEPLGIEQLH---------------  184 (314)
T ss_pred             CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhc--cCCCeEEEECCHHHCC---------------
Confidence            47999999999998877776544589999999999864   344443  3457788777754431               


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                      ....||+|++--    ..-.+.      .-..+|+.+++.|+|||.|++..
T Consensus       185 ----------------~~~~FD~V~s~g----vL~H~~------dp~~~L~el~r~LkpGG~Lvlet  225 (314)
T TIGR00452       185 ----------------ELYAFDTVFSMG----VLYHRK------SPLEHLKQLKHQLVIKGELVLET  225 (314)
T ss_pred             ----------------CCCCcCEEEEcc----hhhccC------CHHHHHHHHHHhcCCCCEEEEEE
Confidence                            234799999721    000010      12579999999999999999864

Known examples to date are restricted to the proteobacteria.

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.10  E-value=2.2e-05  Score=84.03  Aligned_cols=103  Identities=22%  Similarity=0.159  Sum_probs=75.7

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.+|+|.|.++..|.+.. .+|++||+++.+++.|++.+....-++++++.+|+.+++.+...             
T Consensus       298 ~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~-------------  363 (443)
T PRK13168        298 GDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPW-------------  363 (443)
T ss_pred             CCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhh-------------
Confidence            3689999999999998888764 69999999999999999876433224699999999988643110             


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                   .+.+||+|++|.            |-.=. .+.++.+.+ |++++++.+-.
T Consensus       364 -------------~~~~fD~Vi~dP------------Pr~g~-~~~~~~l~~-~~~~~ivyvSC  400 (443)
T PRK13168        364 -------------ALGGFDKVLLDP------------PRAGA-AEVMQALAK-LGPKRIVYVSC  400 (443)
T ss_pred             -------------hcCCCCEEEECc------------CCcCh-HHHHHHHHh-cCCCeEEEEEe
Confidence                         235699999973            32212 356666655 68888766543

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.09  E-value=3e-05  Score=81.32  Aligned_cols=100  Identities=15%  Similarity=0.149  Sum_probs=75.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.+|+|.|.++..+... ..+|++||+|+..++.|++......-++++++.+|+.+++..                
T Consensus       234 ~~~vLDL~cG~G~~~l~la~~-~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~----------------  296 (374)
T TIGR02085       234 VTQMWDLFCGVGGFGLHCAGP-DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATA----------------  296 (374)
T ss_pred             CCEEEEccCCccHHHHHHhhc-CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHh----------------
Confidence            368999999999999888753 479999999999999999876433224799999999998743                


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                   ...+||+|++|            ||-.=...++++.+. .++|++++.+-
T Consensus       297 -------------~~~~~D~vi~D------------PPr~G~~~~~l~~l~-~~~p~~ivyvs  333 (374)
T TIGR02085       297 -------------QMSAPELVLVN------------PPRRGIGKELCDYLS-QMAPKFILYSS  333 (374)
T ss_pred             -------------cCCCCCEEEEC------------CCCCCCcHHHHHHHH-hcCCCeEEEEE
Confidence                         12359999997            232224477777775 47888876643

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.08  E-value=1e-05  Score=86.65  Aligned_cols=125  Identities=22%  Similarity=0.155  Sum_probs=80.4

Q ss_pred             hhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhC-----CCEEEEEECChHHHHHHHHhcC-CCCC
Q 038592          237 HVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQL-----DFEVVGVEMDEVVLRVARQYFG-LEDG  310 (478)
Q Consensus       237 ~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~-----~~~V~~VEiDp~Vl~vA~~~Fg-~~~d  310 (478)
                      ..|.++|..++.=......   .....+.||+||+|.|-|.++..+..     ..+|.+||.+|..+...++... -.-+
T Consensus       164 ~~Ye~AI~~al~D~~~~~~---~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~  240 (448)
T PF05185_consen  164 DQYERAIEEALKDRVRKNS---YSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWG  240 (448)
T ss_dssp             HHHHHHHHHHHHHHHTTS----SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHhhhhhcc---ccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCC
Confidence            4577787665432221100   00024679999999999998887764     3799999999976665433211 1125


Q ss_pred             CCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHH
Q 038592          311 EFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLL  390 (478)
Q Consensus       311 ~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~  390 (478)
                      ++++|+.+|..++-                               ...+.|+|+.-+-.+-.       -.+ +.+|.|.
T Consensus       241 ~~V~vi~~d~r~v~-------------------------------lpekvDIIVSElLGsfg-------~nE-l~pE~Ld  281 (448)
T PF05185_consen  241 DKVTVIHGDMREVE-------------------------------LPEKVDIIVSELLGSFG-------DNE-LSPECLD  281 (448)
T ss_dssp             TTEEEEES-TTTSC-------------------------------HSS-EEEEEE---BTTB-------TTT-SHHHHHH
T ss_pred             CeEEEEeCcccCCC-------------------------------CCCceeEEEEeccCCcc-------ccc-cCHHHHH
Confidence            78999999999881                               34589999997654321       123 5578899


Q ss_pred             HHHHccCcCcEEE
Q 038592          391 AARLILSDFGIFV  403 (478)
Q Consensus       391 ~~~~~L~~~Gilv  403 (478)
                      .+.+.|+|+|+++
T Consensus       282 a~~rfLkp~Gi~I  294 (448)
T PF05185_consen  282 AADRFLKPDGIMI  294 (448)
T ss_dssp             HGGGGEEEEEEEE
T ss_pred             HHHhhcCCCCEEe
Confidence            9999999999887

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=98.08  E-value=2e-05  Score=81.10  Aligned_cols=113  Identities=19%  Similarity=0.148  Sum_probs=79.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||..|+|+|+++..+.. .+.+|+++|+|+.+++.|++.+....-+.++++.+|+.+.-                  
T Consensus       183 g~~vLDp~cGtG~~lieaa~-~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~------------------  243 (329)
T TIGR01177       183 GDRVLDPFCGTGGFLIEAGL-MGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLP------------------  243 (329)
T ss_pred             cCEEEECCCCCCHHHHHHHH-hCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCC------------------
Confidence            45899999999998766543 47899999999999999987653211123889999987641                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC--ChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF--VRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f--~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                  .....||+|++|..-+... +.  ....+  +-.++++.+++.|+|||.+++-+...
T Consensus       244 ------------~~~~~~D~Iv~dPPyg~~~-~~--~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~  297 (329)
T TIGR01177       244 ------------LSSESVDAIATDPPYGRST-TA--AGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR  297 (329)
T ss_pred             ------------cccCCCCEEEECCCCcCcc-cc--cCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence                        1346799999974222110 00  01111  23789999999999999998866544

This family is found exclusively in the Archaea.

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.02  E-value=5.8e-05  Score=74.01  Aligned_cols=120  Identities=18%  Similarity=0.265  Sum_probs=90.5

Q ss_pred             CeEEEEeCchhHHHHHHHhh-CCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          264 PKALCVGVGGGALVSFLRTQ-LDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       264 ~~VLvIGlGgG~L~~~L~~~-~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      +-+|.||+|.|.....+++. ++..+.+||+-..++..|-+...-..-++++++..||.+++..+.              
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~--------------  115 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLI--------------  115 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcC--------------
Confidence            67999999999877666665 679999999999999988877654333489999999999998742              


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCC--CCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHH
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPP--VEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDM  416 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp--~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~  416 (478)
                                   +++..|=|.+--.++.+-.    ..  -.+++++|++.+.+.|++||.|-+-+  .+......
T Consensus       116 -------------~~~sl~~I~i~FPDPWpKk----RH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT--D~~~y~e~  172 (227)
T COG0220         116 -------------PDGSLDKIYINFPDPWPKK----RHHKRRLTQPEFLKLYARKLKPGGVLHFAT--DNEEYFEW  172 (227)
T ss_pred             -------------CCCCeeEEEEECCCCCCCc----cccccccCCHHHHHHHHHHccCCCEEEEEe--cCHHHHHH
Confidence                         3458999999544433221    11  23899999999999999999988543  34444443

>PRK06202 hypothetical protein; Provisional

Probab=98.00  E-value=6.6e-05  Score=73.08  Aligned_cols=107  Identities=20%  Similarity=0.192  Sum_probs=74.0

Q ss_pred             CCCeEEEEeCchhHHHHHHHhh-----CCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCC
Q 038592          262 FRPKALCVGVGGGALVSFLRTQ-----LDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNP  336 (478)
Q Consensus       262 ~~~~VLvIGlGgG~L~~~L~~~-----~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~  336 (478)
                      .+.+||.||+|+|.++..|.+.     ++.+|++||+++.+++.|++...   .+++++++.|+-.+-            
T Consensus        60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~---~~~~~~~~~~~~~l~------------  124 (232)
T PRK06202         60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR---RPGVTFRQAVSDELV------------  124 (232)
T ss_pred             CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc---cCCCeEEEEeccccc------------
Confidence            3679999999999988887753     24699999999999999998754   234666666654331            


Q ss_pred             CCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCc
Q 038592          337 DSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNR  411 (478)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~  411 (478)
                                        ..+.+||+|++-.    ..  ..+++..  -..+++.+++.++  |.++++-..+..
T Consensus       125 ------------------~~~~~fD~V~~~~----~l--hh~~d~~--~~~~l~~~~r~~~--~~~~i~dl~~~~  171 (232)
T PRK06202        125 ------------------AEGERFDVVTSNH----FL--HHLDDAE--VVRLLADSAALAR--RLVLHNDLIRSR  171 (232)
T ss_pred             ------------------ccCCCccEEEECC----ee--ecCChHH--HHHHHHHHHHhcC--eeEEEeccccCH
Confidence                              1346799999931    10  0112211  2469999999998  667777766654

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=97.98  E-value=4.7e-05  Score=80.17  Aligned_cols=98  Identities=18%  Similarity=0.130  Sum_probs=78.4

Q ss_pred             CeEEEEeCchhHHHHHHHhhCC-CEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          264 PKALCVGVGGGALVSFLRTQLD-FEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       264 ~~VLvIGlGgG~L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      .+||.+++|.|..+..+....+ .+|+++|+||..++.+++...+..-+.++++.+|+.+++.+                
T Consensus        59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~----------------  122 (382)
T PRK04338         59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE----------------  122 (382)
T ss_pred             CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh----------------
Confidence            5899999999999988776554 59999999999999999887544334577999999988742                


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                    ..+||+|++|.+      |        ...+|+..+...++++|++.+-
T Consensus       123 --------------~~~fD~V~lDP~------G--------s~~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        123 --------------ERKFDVVDIDPF------G--------SPAPFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             --------------cCCCCEEEECCC------C--------CcHHHHHHHHHHhcCCCEEEEE
Confidence                          245999999854      1        1257899988889999999875

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=97.97  E-value=5.7e-05  Score=76.83  Aligned_cols=60  Identities=25%  Similarity=0.316  Sum_probs=51.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHH
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEF  323 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~  323 (478)
                      ..+||.||+|.|.++..|.+. ..+|++||+|+.+++.+++.+... ..++++++.+|+.++
T Consensus        37 ~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~   97 (294)
T PTZ00338         37 TDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKT   97 (294)
T ss_pred             cCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhh
Confidence            468999999999999988875 468999999999999999887532 246899999999875

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=97.94  E-value=8.7e-05  Score=77.55  Aligned_cols=63  Identities=17%  Similarity=0.180  Sum_probs=53.2

Q ss_pred             CeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHH
Q 038592          264 PKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKL  327 (478)
Q Consensus       264 ~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~  327 (478)
                      .++|.+++|.|+++..|.+.. .+|++||+++..++.|++......-.+++++.+|+.+++++.
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~-~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~  270 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNF-RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAM  270 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHH
Confidence            479999999999998888764 499999999999999998764433347999999999998763

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=97.94  E-value=6.4e-05  Score=77.18  Aligned_cols=58  Identities=14%  Similarity=0.084  Sum_probs=47.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-----CCCCeEEEEchHH
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-----DGEFLQVSVGDAI  321 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-----~d~rl~v~v~Dg~  321 (478)
                      ..+||.||+|.|.++..|.+. +.+|+++|+++.+++.|++.+...     ...++++...|..
T Consensus       145 ~~~VLDlGcGtG~~a~~la~~-g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~  207 (315)
T PLN02585        145 GVTVCDAGCGTGSLAIPLALE-GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLE  207 (315)
T ss_pred             CCEEEEecCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchh
Confidence            469999999999999888875 679999999999999999876421     1245788888853

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=97.91  E-value=9.6e-05  Score=77.00  Aligned_cols=62  Identities=18%  Similarity=0.175  Sum_probs=53.1

Q ss_pred             CeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHH
Q 038592          264 PKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEK  326 (478)
Q Consensus       264 ~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~  326 (478)
                      .+||.+|+|.|.++..|.+.. .+|++||+++.+++.|++.+....-++++++.+|+.+++..
T Consensus       199 ~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~  260 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQA  260 (353)
T ss_pred             CcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHH
Confidence            479999999999999888765 49999999999999999887544334799999999999864

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=97.90  E-value=7.9e-05  Score=71.79  Aligned_cols=56  Identities=23%  Similarity=0.245  Sum_probs=47.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEch
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGD  319 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~D  319 (478)
                      ..+||.||+|.|.++..|.+. +.+|+++|+++.+++.|++.+.-. ..++++++.+|
T Consensus        64 ~~~vLDvGcG~G~~~~~l~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d  120 (230)
T PRK07580         64 GLRILDAGCGVGSLSIPLARR-GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGD  120 (230)
T ss_pred             CCEEEEEeCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC
Confidence            469999999999999888765 467999999999999999987532 22578999999

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=97.88  E-value=4.5e-05  Score=72.59  Aligned_cols=68  Identities=26%  Similarity=0.393  Sum_probs=60.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..|||.+|||.|.|..+|.+..+++..+||||++-+..|.+.       .+.|+.+|.-+-|..                
T Consensus        14 gsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-------Gv~Viq~Dld~gL~~----------------   70 (193)
T PF07021_consen   14 GSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-------GVSVIQGDLDEGLAD----------------   70 (193)
T ss_pred             CCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-------CCCEEECCHHHhHhh----------------
Confidence            469999999999999999998899999999999998888765       378999999998865                


Q ss_pred             cccCCCccCCCCCCCCceeEEEE
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMV  365 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIiv  365 (478)
                                  .+++.||.||+
T Consensus        71 ------------f~d~sFD~VIl   81 (193)
T PF07021_consen   71 ------------FPDQSFDYVIL   81 (193)
T ss_pred             ------------CCCCCccEEeh
Confidence                        26889999999

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=97.88  E-value=3.9e-05  Score=74.32  Aligned_cols=105  Identities=24%  Similarity=0.239  Sum_probs=71.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCe-EEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFL-QVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl-~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..++|..|+|-|-.+.-|.-..--+|+.||..+..++.|++|++-. .+++ ++++.---+|..                
T Consensus        56 ~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gLQ~f~P----------------  118 (218)
T PF05891_consen   56 FNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGLQDFTP----------------  118 (218)
T ss_dssp             -SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-GGG-------------------
T ss_pred             cceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhccc-CCCcceEEecCHhhccC----------------
Confidence            5789999999999887554333359999999999999999998852 3444 444444444521                


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCCh---HHHHHHHHHccCcCcEEEE--EeCCC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVR---KDVLLAARLILSDFGIFVM--NVIPP  409 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~---~efl~~~~~~L~~~Gilv~--N~~~~  409 (478)
                                    ...+||+|.+=-..           .+|.+   .+||+.|+..|+|+|++++  |+...
T Consensus       119 --------------~~~~YDlIW~QW~l-----------ghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~  166 (218)
T PF05891_consen  119 --------------EEGKYDLIWIQWCL-----------GHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSS  166 (218)
T ss_dssp             ---------------TT-EEEEEEES-G-----------GGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESS
T ss_pred             --------------CCCcEeEEEehHhh-----------ccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCC
Confidence                          34689999993211           23333   5789999999999999999  88665

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=97.87  E-value=0.00011  Score=77.25  Aligned_cols=100  Identities=16%  Similarity=0.151  Sum_probs=81.6

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-C-CEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-D-FEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~-~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      +.+||.+..|.|..+....... + .+|+++|++|..++.+++...+..-++++++.+|+..++.+              
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~--------------  110 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRY--------------  110 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHH--------------
Confidence            3589999999999997777653 4 59999999999999999887654334689999999999865              


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                     ...+||+|++|.+..        |      .+|+..+.+.++++|++.+-
T Consensus       111 ---------------~~~~fDvIdlDPfGs--------~------~~fld~al~~~~~~glL~vT  146 (374)
T TIGR00308       111 ---------------RNRKFHVIDIDPFGT--------P------APFVDSAIQASAERGLLLVT  146 (374)
T ss_pred             ---------------hCCCCCEEEeCCCCC--------c------HHHHHHHHHhcccCCEEEEE
Confidence                           245799999986421        1      46999999999999999876

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.86  E-value=2.2e-05  Score=76.83  Aligned_cols=95  Identities=17%  Similarity=0.154  Sum_probs=68.8

Q ss_pred             CCCeEEEEeCchhHHHHHHHhh-CCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          262 FRPKALCVGVGGGALVSFLRTQ-LDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       262 ~~~~VLvIGlGgG~L~~~L~~~-~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..++|+.||+|.|.++..+.+. ++.++++.|+ |.|++.|++      .+|++++-+|..+   .              
T Consensus       100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f~---~--------------  155 (241)
T PF00891_consen  100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFFD---P--------------  155 (241)
T ss_dssp             TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------TTTEEEEES-TTT---C--------------
T ss_pred             CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------ccccccccccHHh---h--------------
Confidence            3568999999999988776665 5899999999 999999998      6899999999872   1              


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcC--cEEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDF--GIFVM  404 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~--Gilv~  404 (478)
                                     -.. +|++++--.=.+    .  ++.  .....|++++..|+||  |.+++
T Consensus       156 ---------------~P~-~D~~~l~~vLh~----~--~d~--~~~~iL~~~~~al~pg~~g~llI  197 (241)
T PF00891_consen  156 ---------------LPV-ADVYLLRHVLHD----W--SDE--DCVKILRNAAAALKPGKDGRLLI  197 (241)
T ss_dssp             ---------------CSS-ESEEEEESSGGG----S---HH--HHHHHHHHHHHHSEECTTEEEEE
T ss_pred             ---------------hcc-ccceeeehhhhh----c--chH--HHHHHHHHHHHHhCCCCCCeEEE
Confidence                           223 999998210000    0  111  2467899999999988  87776

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=97.84  E-value=7.1e-05  Score=73.30  Aligned_cols=133  Identities=14%  Similarity=0.156  Sum_probs=89.7

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC------------CCCCeEEEEchHHHHHHHHHhh
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE------------DGEFLQVSVGDAIEFLEKLARQ  330 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~------------~d~rl~v~v~Dg~~~l~~~~~~  330 (478)
                      ..+|||.|||-|.-+.+|+.+ +.+|++||+++.-++.+.+-.++.            ...++++.++|.+++=..    
T Consensus        44 ~~rvLvPgCGkg~D~~~LA~~-G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~----  118 (226)
T PRK13256         44 SSVCLIPMCGCSIDMLFFLSK-GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI----  118 (226)
T ss_pred             CCeEEEeCCCChHHHHHHHhC-CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcc----
Confidence            469999999999999999886 789999999999999986633321            245789999999886100    


Q ss_pred             hcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC-
Q 038592          331 IVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP-  409 (478)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~-  409 (478)
                                             .....+||+|+-=.       -+.+-|++ ....+.+.+.++|+|||.+++-.... 
T Consensus       119 -----------------------~~~~~~fD~VyDra-------~~~Alpp~-~R~~Y~~~l~~lL~pgg~llll~~~~~  167 (226)
T PRK13256        119 -----------------------ANNLPVFDIWYDRG-------AYIALPND-LRTNYAKMMLEVCSNNTQILLLVMEHD  167 (226)
T ss_pred             -----------------------ccccCCcCeeeeeh-------hHhcCCHH-HHHHHHHHHHHHhCCCcEEEEEEEecC
Confidence                                   01235799966411       11122444 56889999999999999877543321 


Q ss_pred             ----CchHHHHHHHHHHHhcCccEEEe
Q 038592          410 ----NRSFYDMLIQEFRDVFQELYEID  432 (478)
Q Consensus       410 ----~~~~~~~v~~~l~~vF~~v~~~~  432 (478)
                          .+.+. --...+++.|...+.+.
T Consensus       168 ~~~~GPPf~-v~~~e~~~lf~~~~~i~  193 (226)
T PRK13256        168 KKSQTPPYS-VTQAELIKNFSAKIKFE  193 (226)
T ss_pred             CCCCCCCCc-CCHHHHHHhccCCceEE
Confidence                12221 11356777887655443

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=97.83  E-value=0.00013  Score=72.61  Aligned_cols=58  Identities=24%  Similarity=0.285  Sum_probs=51.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHH
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEF  323 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~  323 (478)
                      ..+||.||+|.|.++..+.+. ..+|++||+|+.+++.+++.+..  .++++++.+|+.++
T Consensus        30 ~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~   87 (258)
T PRK14896         30 GDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKV   87 (258)
T ss_pred             cCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccC
Confidence            468999999999999999887 56999999999999999998753  46899999999865

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=97.83  E-value=5.3e-05  Score=74.16  Aligned_cols=102  Identities=20%  Similarity=0.234  Sum_probs=74.8

Q ss_pred             CeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          264 PKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       264 ~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      +-++.+|+|.|..++.+..++ -+|+++|++++|+++|++++... .+-..+..-.++++++                  
T Consensus        35 ~~a~DvG~G~Gqa~~~iae~~-k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~------------------   95 (261)
T KOG3010|consen   35 RLAWDVGTGNGQAARGIAEHY-KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLL------------------   95 (261)
T ss_pred             ceEEEeccCCCcchHHHHHhh-hhheeecCCHHHHHHhhcCCCcccccCCcccccccccccc------------------
Confidence            478899999998888888874 58999999999999999998753 1222334444555553                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCC-CChHHHHHHHHHccCcCc-EEEEEeCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVE-FVRKDVLLAARLILSDFG-IFVMNVIP  408 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~-f~~~efl~~~~~~L~~~G-ilv~N~~~  408 (478)
                                  ..+++.|+|++=    .        ..+ |--++|++.+++.|+++| ++++....
T Consensus        96 ------------g~e~SVDlI~~A----q--------a~HWFdle~fy~~~~rvLRk~Gg~iavW~Y~  139 (261)
T KOG3010|consen   96 ------------GGEESVDLITAA----Q--------AVHWFDLERFYKEAYRVLRKDGGLIAVWNYN  139 (261)
T ss_pred             ------------CCCcceeeehhh----h--------hHHhhchHHHHHHHHHHcCCCCCEEEEEEcc
Confidence                        136789999881    1        123 567999999999998755 88876654

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=97.79  E-value=9.8e-05  Score=71.95  Aligned_cols=131  Identities=25%  Similarity=0.323  Sum_probs=86.7

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC------------CCCCeEEEEchHHHHHHHHHhh
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE------------DGEFLQVSVGDAIEFLEKLARQ  330 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~------------~d~rl~v~v~Dg~~~l~~~~~~  330 (478)
                      +.+|||.|||-|.-..+|.++ +.+|++||+++.-++.|.+.-+..            ...++++.++|.+++=.     
T Consensus        38 ~~rvLvPgCG~g~D~~~La~~-G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~-----  111 (218)
T PF05724_consen   38 GGRVLVPGCGKGYDMLWLAEQ-GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP-----  111 (218)
T ss_dssp             SEEEEETTTTTSCHHHHHHHT-TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG-----
T ss_pred             CCeEEEeCCCChHHHHHHHHC-CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCCh-----
Confidence            469999999999999999986 789999999999999985543321            24679999999998621     


Q ss_pred             hcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE-EeCCC
Q 038592          331 IVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM-NVIPP  409 (478)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~-N~~~~  409 (478)
                                              ....+||+|+==.       .+.+.|+. ....+.+.++++|+|+|.+++ -+.-.
T Consensus       112 ------------------------~~~g~fD~iyDr~-------~l~Alpp~-~R~~Ya~~l~~ll~p~g~~lLi~l~~~  159 (218)
T PF05724_consen  112 ------------------------EDVGKFDLIYDRT-------FLCALPPE-MRERYAQQLASLLKPGGRGLLITLEYP  159 (218)
T ss_dssp             ------------------------SCHHSEEEEEECS-------STTTS-GG-GHHHHHHHHHHCEEEEEEEEEEEEES-
T ss_pred             ------------------------hhcCCceEEEEec-------ccccCCHH-HHHHHHHHHHHHhCCCCcEEEEEEEcC
Confidence                                    1234799987411       12233444 678999999999999998332 22211


Q ss_pred             -----CchHHHHHHHHHHHhcCccEEEe
Q 038592          410 -----NRSFYDMLIQEFRDVFQELYEID  432 (478)
Q Consensus       410 -----~~~~~~~v~~~l~~vF~~v~~~~  432 (478)
                           .+.+ .--...+.+.|..-+.+.
T Consensus       160 ~~~~~GPPf-~v~~~ev~~l~~~~f~i~  186 (218)
T PF05724_consen  160 QGEMEGPPF-SVTEEEVRELFGPGFEIE  186 (218)
T ss_dssp             CSCSSSSS-----HHHHHHHHTTTEEEE
T ss_pred             CcCCCCcCC-CCCHHHHHHHhcCCcEEE
Confidence                 2232 223456777777555443

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=97.77  E-value=0.00025  Score=67.42  Aligned_cols=108  Identities=22%  Similarity=0.223  Sum_probs=80.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..++|.+=.|+|+|+......-..+++.||.|...+.+.++....- ...+.+++..|+..++++..             
T Consensus        44 g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~-------------  110 (187)
T COG0742          44 GARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLG-------------  110 (187)
T ss_pred             CCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcC-------------
Confidence            4799999999999998776654579999999999999999887532 35789999999999987732             


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCC--CCh-HHHHHH--HHHccCcCcEEEEEeCCC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVE--FVR-KDVLLA--ARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~--f~~-~efl~~--~~~~L~~~Gilv~N~~~~  409 (478)
                                    ....||+|++|            ||-+  +.. ..-+..  -...|+|+|++++-....
T Consensus       111 --------------~~~~FDlVflD------------PPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~  157 (187)
T COG0742         111 --------------TREPFDLVFLD------------PPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD  157 (187)
T ss_pred             --------------CCCcccEEEeC------------CCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence                          22369999997            3332  342 222333  245799999999865544

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=97.75  E-value=0.00022  Score=71.05  Aligned_cols=58  Identities=31%  Similarity=0.422  Sum_probs=52.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHH
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEF  323 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~  323 (478)
                      ...||.||.|.|+|+..|.+. ..+|++||||+.+++.-++.+.  ..++++++.+|++++
T Consensus        31 ~d~VlEIGpG~GaLT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~   88 (259)
T COG0030          31 GDNVLEIGPGLGALTEPLLER-AARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKF   88 (259)
T ss_pred             CCeEEEECCCCCHHHHHHHhh-cCeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcC
Confidence            468999999999999999986 4679999999999999999987  357899999999987

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=97.74  E-value=0.00027  Score=70.41  Aligned_cols=155  Identities=14%  Similarity=0.140  Sum_probs=94.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcC-CCCCCCeEEEEchHHH-HHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFG-LEDGEFLQVSVGDAIE-FLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg-~~~d~rl~v~v~Dg~~-~l~~~~~~~~~~~~~~~  339 (478)
                      +..+|.+|+|.|+.+.++.+.+ +..|++||.++..+.+|.+... +....++.|++-+--. ...+             
T Consensus       149 ~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~-------------  215 (328)
T KOG2904|consen  149 HTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDE-------------  215 (328)
T ss_pred             cceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccc-------------
Confidence            4579999999999999988876 7899999999999999987653 2234677777432211 0000             


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeC---CCCC-----CCCCCCCCCCCCC--------hHHHHHHHHHccCcCcEEE
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDL---DSGD-----ARNGTSAPPVEFV--------RKDVLLAARLILSDFGIFV  403 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv---~s~d-----~~~g~s~Pp~~f~--------~~efl~~~~~~L~~~Gilv  403 (478)
                                   -+....++|+|+..-   .+.|     +..+..-|+.+|.        -..++..+.+.|.+||.+.
T Consensus       216 -------------~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~  282 (328)
T KOG2904|consen  216 -------------HPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQ  282 (328)
T ss_pred             -------------cccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEE
Confidence                         001357899998732   1111     1122333443331        2457788889999999999


Q ss_pred             EEeC--CCCchHHHHHH-HHHHHhcCccEEEeecccceEEEEE
Q 038592          404 MNVI--PPNRSFYDMLI-QEFRDVFQELYEIDVGNEENFVLIA  443 (478)
Q Consensus       404 ~N~~--~~~~~~~~~v~-~~l~~vF~~v~~~~v~~~~N~Vl~a  443 (478)
                      +++.  ..++...+.++ ..+...|..+....-....+.+++.
T Consensus       283 le~~~~~~~~~lv~~~m~s~~~d~~~~~~v~~Df~~~~Rfv~i  325 (328)
T KOG2904|consen  283 LELVERKEHSYLVRIWMISLKDDSNGKAAVVSDFAGRPRFVII  325 (328)
T ss_pred             EEecccccCcHHHHHHHHhchhhccchhheeecccCCcceEEE
Confidence            9998  44665555433 3333334443333222233444443

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=97.74  E-value=2.2e-05  Score=66.84  Aligned_cols=97  Identities=25%  Similarity=0.302  Sum_probs=47.8

Q ss_pred             EEEeCchhHHHHHHHhhC-C---CEEEEEECChH---HHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          267 LCVGVGGGALVSFLRTQL-D---FEVVGVEMDEV---VLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       267 LvIGlGgG~L~~~L~~~~-~---~~V~~VEiDp~---Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      |.||...|..+.++.+.. .   .++.+||..+.   .-+..++ .++  ..+++++.+|..+++.+..           
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~-~~~--~~~~~~~~g~s~~~l~~~~-----------   66 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK-AGL--SDRVEFIQGDSPDFLPSLP-----------   66 (106)
T ss_dssp             --------------------------EEEESS-------------GGG---BTEEEEES-THHHHHHHH-----------
T ss_pred             CccccccccccccccccccccccCCEEEEECCCcccccchhhhh-cCC--CCeEEEEEcCcHHHHHHcC-----------
Confidence            568888888777777654 2   37999999994   4444443 222  4579999999999987742           


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                       ..+||+|++|.+....           .....++.+..+|+|||+++++
T Consensus        67 -----------------~~~~dli~iDg~H~~~-----------~~~~dl~~~~~~l~~ggviv~d  104 (106)
T PF13578_consen   67 -----------------DGPIDLIFIDGDHSYE-----------AVLRDLENALPRLAPGGVIVFD  104 (106)
T ss_dssp             -----------------H--EEEEEEES---HH-----------HHHHHHHHHGGGEEEEEEEEEE
T ss_pred             -----------------CCCEEEEEECCCCCHH-----------HHHHHHHHHHHHcCCCeEEEEe
Confidence                             3579999999754321           3467889999999999999974

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.66  E-value=0.00053  Score=65.12  Aligned_cols=92  Identities=24%  Similarity=0.247  Sum_probs=68.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      .+.|+.+|+|+|.|+....-.-..+|.+||+||+.+++|++.-+- ...++.+.++|..++                   
T Consensus        46 g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~-l~g~v~f~~~dv~~~-------------------  105 (198)
T COG2263          46 GKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE-LLGDVEFVVADVSDF-------------------  105 (198)
T ss_pred             CCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh-hCCceEEEEcchhhc-------------------
Confidence            467999999999998665533247999999999999999987653 345799999999887                   


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHcc
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLIL  396 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L  396 (478)
                                    ..++|.+|.+-    +. |..  -.+ -+..|++.+.+.-
T Consensus       106 --------------~~~~dtvimNP----PF-G~~--~rh-aDr~Fl~~Ale~s  137 (198)
T COG2263         106 --------------RGKFDTVIMNP----PF-GSQ--RRH-ADRPFLLKALEIS  137 (198)
T ss_pred             --------------CCccceEEECC----CC-ccc--ccc-CCHHHHHHHHHhh
Confidence                          35688888842    11 111  122 5688988887765

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=97.66  E-value=0.00066  Score=63.26  Aligned_cols=109  Identities=18%  Similarity=0.199  Sum_probs=84.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ...||.+|-|+|.+++.+..+.  +..++++|.+++-+..-.+.|.     .++++.+|+++.=..+..           
T Consensus        49 glpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p-----~~~ii~gda~~l~~~l~e-----------  112 (194)
T COG3963          49 GLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP-----GVNIINGDAFDLRTTLGE-----------  112 (194)
T ss_pred             CCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC-----CccccccchhhHHHHHhh-----------
Confidence            5689999999999999998874  6799999999999999888774     357999999885322222           


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                    ..++.||.||.-+       .+-.-|.+ .+-+.|+.+...|..||.++.=..++
T Consensus       113 --------------~~gq~~D~viS~l-------Pll~~P~~-~~iaile~~~~rl~~gg~lvqftYgp  159 (194)
T COG3963         113 --------------HKGQFFDSVISGL-------PLLNFPMH-RRIAILESLLYRLPAGGPLVQFTYGP  159 (194)
T ss_pred             --------------cCCCeeeeEEecc-------ccccCcHH-HHHHHHHHHHHhcCCCCeEEEEEecC
Confidence                          2678899999843       12222333 57889999999999999998644443

>TIGR00755 ksgA dimethyladenosine transferase

Probab=97.59  E-value=0.00043  Score=68.59  Aligned_cols=58  Identities=31%  Similarity=0.390  Sum_probs=51.1

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHH
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEF  323 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~  323 (478)
                      ..+||.||+|.|.++..|.+.. .+|+++|+|+.+++.+++.+..  .++++++.+|+.++
T Consensus        30 ~~~VLEiG~G~G~lt~~L~~~~-~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~   87 (253)
T TIGR00755        30 GDVVLEIGPGLGALTEPLLKRA-KKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKV   87 (253)
T ss_pred             cCEEEEeCCCCCHHHHHHHHhC-CcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcC
Confidence            4689999999999999998875 4699999999999999988753  57899999999875

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.55  E-value=0.00021  Score=68.73  Aligned_cols=99  Identities=19%  Similarity=0.198  Sum_probs=75.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC---CCEEEEEECChHHHHHHHHhcCCC----------CCCCeEEEEchHHHHHHHHHh
Q 038592          263 RPKALCVGVGGGALVSFLRTQL---DFEVVGVEMDEVVLRVARQYFGLE----------DGEFLQVSVGDAIEFLEKLAR  329 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~---~~~V~~VEiDp~Vl~vA~~~Fg~~----------~d~rl~v~v~Dg~~~l~~~~~  329 (478)
                      ..+.|.+|.|+|.|+.......   +....+||.-|++++.+++.....          +..++.++++||+.--     
T Consensus        83 G~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~-----  157 (237)
T KOG1661|consen   83 GASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGY-----  157 (237)
T ss_pred             CcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccC-----
Confidence            4699999999999987777654   245599999999999999765321          3478999999999752     


Q ss_pred             hhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeC
Q 038592          330 QIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVI  407 (478)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~  407 (478)
                                               .+..+||.|.+-+..                .+..+.+-..|+++|-+++-+.
T Consensus       158 -------------------------~e~a~YDaIhvGAaa----------------~~~pq~l~dqL~~gGrllip~~  194 (237)
T KOG1661|consen  158 -------------------------AEQAPYDAIHVGAAA----------------SELPQELLDQLKPGGRLLIPVG  194 (237)
T ss_pred             -------------------------CccCCcceEEEccCc----------------cccHHHHHHhhccCCeEEEeec
Confidence                                     256789999995332                2355678888999888887665

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=97.55  E-value=0.00023  Score=67.45  Aligned_cols=91  Identities=23%  Similarity=0.283  Sum_probs=64.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.||+|.|.+...+.+..+..+++||+++++++.|++.       +++++.+|..+.+..                
T Consensus        14 ~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-------~~~~~~~d~~~~l~~----------------   70 (194)
T TIGR02081        14 GSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-------GVNVIQGDLDEGLEA----------------   70 (194)
T ss_pred             CCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-------CCeEEEEEhhhcccc----------------
Confidence            458999999999999888776677889999999999998752       467888997654321                


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCc
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSD  398 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~  398 (478)
                                  ..+.+||+|++-.    ....+   +   -...+++.+.+.++.
T Consensus        71 ------------~~~~sfD~Vi~~~----~l~~~---~---d~~~~l~e~~r~~~~  104 (194)
T TIGR02081        71 ------------FPDKSFDYVILSQ----TLQAT---R---NPEEILDEMLRVGRH  104 (194)
T ss_pred             ------------cCCCCcCEEEEhh----HhHcC---c---CHHHHHHHHHHhCCe
Confidence                        1356799999831    11111   1   135677777777654

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=97.49  E-value=0.00023  Score=71.44  Aligned_cols=57  Identities=28%  Similarity=0.390  Sum_probs=50.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHH
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEF  323 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~  323 (478)
                      ..+||.||+|.|.++..|.+... +|++||+|+.+++.+++.+.   +++++++.+|+.++
T Consensus        43 ~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~---~~~v~~i~~D~~~~   99 (272)
T PRK00274         43 GDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFA---EDNLTIIEGDALKV   99 (272)
T ss_pred             cCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhc---cCceEEEEChhhcC
Confidence            46899999999999999988744 99999999999999998764   26899999999976

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.49  E-value=0.00017  Score=72.53  Aligned_cols=147  Identities=16%  Similarity=0.163  Sum_probs=74.3

Q ss_pred             CCCeEEEEeCch-hHHHHHHHh-hC-CCEEEEEECChHHHHHHHHhcC-C-CCCCCeEEEEchHHHHHHHHHhhhcCCCC
Q 038592          262 FRPKALCVGVGG-GALVSFLRT-QL-DFEVVGVEMDEVVLRVARQYFG-L-EDGEFLQVSVGDAIEFLEKLARQIVGKNP  336 (478)
Q Consensus       262 ~~~~VLvIGlGg-G~L~~~L~~-~~-~~~V~~VEiDp~Vl~vA~~~Fg-~-~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~  336 (478)
                      .|.+|+.||.|. -..+..|.+ +. +..|+++|+||+-++.|++-.. . .-+.+++++.+|+.+.-.           
T Consensus       120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~-----------  188 (276)
T PF03059_consen  120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTY-----------  188 (276)
T ss_dssp             ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-G-----------
T ss_pred             ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccc-----------
Confidence            367999999994 344444554 33 6899999999999999988654 1 126789999999976521           


Q ss_pred             CCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHH
Q 038592          337 DSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDM  416 (478)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~  416 (478)
                                         .-..||+|++-+--     ||..-    --.+.+.++.+.+++|.++++=-..--+.+..-
T Consensus       189 -------------------dl~~~DvV~lAalV-----g~~~e----~K~~Il~~l~~~m~~ga~l~~Rsa~GlR~~LYp  240 (276)
T PF03059_consen  189 -------------------DLKEYDVVFLAALV-----GMDAE----PKEEILEHLAKHMAPGARLVVRSAHGLRSFLYP  240 (276)
T ss_dssp             -------------------G----SEEEE-TT------S--------SHHHHHHHHHHHS-TTSEEEEEE--GGGGGSS-
T ss_pred             -------------------ccccCCEEEEhhhc-----ccccc----hHHHHHHHHHhhCCCCcEEEEecchhhHHHcCC
Confidence                               12469999995432     33211    348999999999999999987422111111111


Q ss_pred             HHH--HHHHhcCccEEE-eecccceEEEEEEcCCC
Q 038592          417 LIQ--EFRDVFQELYEI-DVGNEENFVLIATGLSI  448 (478)
Q Consensus       417 v~~--~l~~vF~~v~~~-~v~~~~N~Vl~a~~~~~  448 (478)
                      .++  .++ -|..+..+ +.++-.|.|+|+.+...
T Consensus       241 ~vd~~~l~-gf~~~~~~hP~~~ViNSvv~~rk~~~  274 (276)
T PF03059_consen  241 VVDPEDLR-GFEVLAVVHPTDEVINSVVFARKKQV  274 (276)
T ss_dssp             ---TGGGT-TEEEEEEE---TT---EEEEE-----
T ss_pred             CCChHHCC-CeEEEEEECCCCCceeEEEEEEeccc
Confidence            111  111 45543333 34556799999987653

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=97.48  E-value=0.00076  Score=62.23  Aligned_cols=81  Identities=19%  Similarity=0.171  Sum_probs=58.3

Q ss_pred             EEEECChHHHHHHHHhcCCCC---CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEE
Q 038592          289 VGVEMDEVVLRVARQYFGLED---GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMV  365 (478)
Q Consensus       289 ~~VEiDp~Vl~vA~~~Fg~~~---d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIiv  365 (478)
                      ++||+++.|+++|++......   .++++++++|+.+.-                              ..++.||+|++
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp------------------------------~~~~~fD~v~~   50 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLP------------------------------FDDCEFDAVTM   50 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCC------------------------------CCCCCeeEEEe
Confidence            489999999999986653221   357999999997651                              14668999998


Q ss_pred             eCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          366 DLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       366 Dv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                      ..       ++...+   -...+|+.+++.|+|||.+++--++.
T Consensus        51 ~~-------~l~~~~---d~~~~l~ei~rvLkpGG~l~i~d~~~   84 (160)
T PLN02232         51 GY-------GLRNVV---DRLRAMKEMYRVLKPGSRVSILDFNK   84 (160)
T ss_pred             cc-------hhhcCC---CHHHHHHHHHHHcCcCeEEEEEECCC
Confidence            31       111111   24789999999999999998755544

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=97.44  E-value=0.00048  Score=70.92  Aligned_cols=63  Identities=17%  Similarity=0.355  Sum_probs=47.3

Q ss_pred             CCCCeEEEEeCchhHHHHHHHhh-CCCEEEEEECChHHHHHHHHhcCCC--CCCCeEEEE-chHHHH
Q 038592          261 GFRPKALCVGVGGGALVSFLRTQ-LDFEVVGVEMDEVVLRVARQYFGLE--DGEFLQVSV-GDAIEF  323 (478)
Q Consensus       261 g~~~~VLvIGlGgG~L~~~L~~~-~~~~V~~VEiDp~Vl~vA~~~Fg~~--~d~rl~v~v-~Dg~~~  323 (478)
                      +...++|.||+|+|++...|... ++.+++++|||+..++.|++.....  -..+++++. .|.-..
T Consensus       113 ~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i  179 (321)
T PRK11727        113 GANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAI  179 (321)
T ss_pred             CCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhh
Confidence            34689999999988766555544 5789999999999999999887643  245788865 344333

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.40  E-value=6.1e-05  Score=73.30  Aligned_cols=101  Identities=26%  Similarity=0.325  Sum_probs=77.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      -+++|.+|||+|..+-.|+.. -.++++|||++.|++.|.+-=.+     =++.++|+..|++..               
T Consensus       126 F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg~Y-----D~L~~Aea~~Fl~~~---------------  184 (287)
T COG4976         126 FRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKGLY-----DTLYVAEAVLFLEDL---------------  184 (287)
T ss_pred             cceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhccch-----HHHHHHHHHHHhhhc---------------
Confidence            579999999999999888764 46899999999999999875222     156788999998642               


Q ss_pred             cccCCCccCCCCCCCCceeEEEE-eCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMV-DLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIP  408 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIiv-Dv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~  408 (478)
                                   .+.+||+|.- |+..  ..+         --+.++-.+...|+|||.|++.+..
T Consensus       185 -------------~~er~DLi~AaDVl~--YlG---------~Le~~~~~aa~~L~~gGlfaFSvE~  227 (287)
T COG4976         185 -------------TQERFDLIVAADVLP--YLG---------ALEGLFAGAAGLLAPGGLFAFSVET  227 (287)
T ss_pred             -------------cCCcccchhhhhHHH--hhc---------chhhHHHHHHHhcCCCceEEEEecc
Confidence                         5778999975 3322  111         1156888899999999999998754

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.39  E-value=0.0012  Score=64.26  Aligned_cols=137  Identities=20%  Similarity=0.273  Sum_probs=95.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECCh----HHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDE----VVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNP  336 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp----~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~  336 (478)
                      ..+||-+|...|+..+.+....  ...|.+||.+|    +++++|++.      +++--+++||..--+= .        
T Consensus        74 gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R------~NIiPIl~DAr~P~~Y-~--------  138 (229)
T PF01269_consen   74 GSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR------PNIIPILEDARHPEKY-R--------  138 (229)
T ss_dssp             T-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS------TTEEEEES-TTSGGGG-T--------
T ss_pred             CCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC------CceeeeeccCCChHHh-h--------
Confidence            4699999999999999999874  57999999999    677888876      6788899999853211 0        


Q ss_pred             CCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC-------
Q 038592          337 DSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP-------  409 (478)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~-------  409 (478)
                                        .--...|+|+.|+--++            ..+-+..+++..|++||.+++-+-.+       
T Consensus       139 ------------------~lv~~VDvI~~DVaQp~------------Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~  188 (229)
T PF01269_consen  139 ------------------MLVEMVDVIFQDVAQPD------------QARIAALNARHFLKPGGHLIISIKARSIDSTAD  188 (229)
T ss_dssp             ------------------TTS--EEEEEEE-SSTT------------HHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSS
T ss_pred             ------------------cccccccEEEecCCChH------------HHHHHHHHHHhhccCCcEEEEEEecCcccCcCC
Confidence                              12347999999986543            24678889999999999888655221       


Q ss_pred             CchHHHHHHHHHHHh-cCccEEEeec--ccceEEEEEE
Q 038592          410 NRSFYDMLIQEFRDV-FQELYEIDVG--NEENFVLIAT  444 (478)
Q Consensus       410 ~~~~~~~v~~~l~~v-F~~v~~~~v~--~~~N~Vl~a~  444 (478)
                      ..+.++..++.|++. |.-+-.+.++  +..+.+++|.
T Consensus       189 p~~vf~~e~~~L~~~~~~~~e~i~LePy~~dH~~vv~~  226 (229)
T PF01269_consen  189 PEEVFAEEVKKLKEEGFKPLEQITLEPYERDHAMVVGR  226 (229)
T ss_dssp             HHHHHHHHHHHHHCTTCEEEEEEE-TTTSTTEEEEEEE
T ss_pred             HHHHHHHHHHHHHHcCCChheEeccCCCCCCcEEEEEE
Confidence            235567778888874 7655555443  3446666664

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=97.39  E-value=0.00078  Score=63.12  Aligned_cols=123  Identities=19%  Similarity=0.162  Sum_probs=69.9

Q ss_pred             CCCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCC---CCCCeEEEEchHHHHHHHHHhhhcCCCCC
Q 038592          262 FRPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLE---DGEFLQVSVGDAIEFLEKLARQIVGKNPD  337 (478)
Q Consensus       262 ~~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~---~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~  337 (478)
                      ..++||.||+|.|..++.+.... ..+|++-|.++ +++..+......   ..+++++..=|--+-+.....        
T Consensus        45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~--------  115 (173)
T PF10294_consen   45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL--------  115 (173)
T ss_dssp             TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHH--------
T ss_pred             CCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccc--------
Confidence            36899999999999998888874 67999999999 888888765432   245677766442221111000        


Q ss_pred             CCCcccccCCCccCCCCCCCCceeEEEE-eCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHH
Q 038592          338 SFGACSLKDGNFLDNSDRVDNKFDVIMV-DLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDM  416 (478)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~yDvIiv-Dv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~  416 (478)
                                        ...+||+|+. |+-        +.   .-.-+.+++.++.+|+++|.+++-...|... -+.
T Consensus       116 ------------------~~~~~D~IlasDv~--------Y~---~~~~~~L~~tl~~ll~~~~~vl~~~~~R~~~-~~~  165 (173)
T PF10294_consen  116 ------------------EPHSFDVILASDVL--------YD---EELFEPLVRTLKRLLKPNGKVLLAYKRRRKS-EQE  165 (173)
T ss_dssp             ------------------S-SSBSEEEEES----------S----GGGHHHHHHHHHHHBTT-TTEEEEEE-S-TG-GCH
T ss_pred             ------------------ccccCCEEEEeccc--------ch---HHHHHHHHHHHHHHhCCCCEEEEEeCEecHH-HHH
Confidence                              3457999997 331        11   1244889999999999988866655555322 233


Q ss_pred             HHHHHHH
Q 038592          417 LIQEFRD  423 (478)
Q Consensus       417 v~~~l~~  423 (478)
                      +++.+++
T Consensus       166 F~~~~~k  172 (173)
T PF10294_consen  166 FFDRLKK  172 (173)
T ss_dssp             HHHHH--
T ss_pred             HHHHhhh
Confidence            4555543

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=97.38  E-value=0.0009  Score=63.24  Aligned_cols=107  Identities=22%  Similarity=0.274  Sum_probs=72.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhh-CCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQ-LDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~-~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..|||.+|+|.|.+..-|++. ++..+++||.++..+++|+.--.-. .++.+++.+.|..+=  +              
T Consensus        68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~--~--------------  131 (227)
T KOG1271|consen   68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP--D--------------  131 (227)
T ss_pred             ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC--c--------------
Confidence            349999999999988888775 5677999999999999987433211 123488888887652  0              


Q ss_pred             cccccCCCccCCCCCCCCceeEEEE----eCCCCCCCCCCCCCCCCCCh--HHHHHHHHHccCcCcEEEEEeC
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMV----DLDSGDARNGTSAPPVEFVR--KDVLLAARLILSDFGIFVMNVI  407 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIiv----Dv~s~d~~~g~s~Pp~~f~~--~efl~~~~~~L~~~Gilv~N~~  407 (478)
                                    ....+||+|+=    |+-+      + | |.....  .-++..+.+.|+|+|+|++--.
T Consensus       132 --------------~~~~qfdlvlDKGT~DAis------L-s-~d~~~~r~~~Y~d~v~~ll~~~gifvItSC  182 (227)
T KOG1271|consen  132 --------------FLSGQFDLVLDKGTLDAIS------L-S-PDGPVGRLVVYLDSVEKLLSPGGIFVITSC  182 (227)
T ss_pred             --------------ccccceeEEeecCceeeee------c-C-CCCcccceeeehhhHhhccCCCcEEEEEec
Confidence                          13456777762    2211      1 1 111111  4578889999999999997443

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=97.38  E-value=0.00057  Score=66.29  Aligned_cols=127  Identities=21%  Similarity=0.201  Sum_probs=83.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      +.=+|.||||+|..+..|..- +....+|||+|.|+++|.+  ...+..   ++.+|-=+=+                  
T Consensus        51 ~~~iLDIGCGsGLSg~vL~~~-Gh~wiGvDiSpsML~~a~~--~e~egd---lil~DMG~Gl------------------  106 (270)
T KOG1541|consen   51 SGLILDIGCGSGLSGSVLSDS-GHQWIGVDISPSMLEQAVE--RELEGD---LILCDMGEGL------------------  106 (270)
T ss_pred             CcEEEEeccCCCcchheeccC-CceEEeecCCHHHHHHHHH--hhhhcC---eeeeecCCCC------------------
Confidence            556999999999988877653 5789999999999999986  211221   2333321111                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEE-e----CCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHH
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMV-D----LDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDML  417 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIiv-D----v~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v  417 (478)
                                 +.....||.+|. -    +++.+.+...  |-  ---..|+..++.+|+.++-.++++.+.+.+..+++
T Consensus       107 -----------pfrpGtFDg~ISISAvQWLcnA~~s~~~--P~--~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i  171 (270)
T KOG1541|consen  107 -----------PFRPGTFDGVISISAVQWLCNADKSLHV--PK--KRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMI  171 (270)
T ss_pred             -----------CCCCCccceEEEeeeeeeecccCccccC--hH--HHHHHHhhhhhhhhccCceeEEEecccchHHHHHH
Confidence                       125677887764 1    1222221111  11  12356999999999999999999999888888886


Q ss_pred             HH-HHHHhcCcc
Q 038592          418 IQ-EFRDVFQEL  428 (478)
Q Consensus       418 ~~-~l~~vF~~v  428 (478)
                      .+ .+++=|..-
T Consensus       172 ~~~a~~aGF~GG  183 (270)
T KOG1541|consen  172 MQQAMKAGFGGG  183 (270)
T ss_pred             HHHHHhhccCCc
Confidence            54 445558753

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=97.37  E-value=0.00025  Score=67.17  Aligned_cols=96  Identities=20%  Similarity=0.223  Sum_probs=76.0

Q ss_pred             CeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCccc
Q 038592          264 PKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACS  343 (478)
Q Consensus       264 ~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~  343 (478)
                      -.+..+|.|+|.|+++..++ .-+|.++|.||...+.|++...++.+.++.|+++||++|                    
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y--------------------   92 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDY--------------------   92 (252)
T ss_pred             hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccc--------------------
Confidence            46889999999999877765 679999999999999999999888889999999999998                    


Q ss_pred             ccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCCh---HHHHHHHHHccCcCcEEE
Q 038592          344 LKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVR---KDVLLAARLILSDFGIFV  403 (478)
Q Consensus       344 ~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~---~efl~~~~~~L~~~Gilv  403 (478)
                                  .-..-|+|++..-+..           |..   ...+..+.+.|+.+|.++
T Consensus        93 ------------~fe~ADvvicEmlDTa-----------Li~E~qVpV~n~vleFLr~d~tii  132 (252)
T COG4076          93 ------------DFENADVVICEMLDTA-----------LIEEKQVPVINAVLEFLRYDPTII  132 (252)
T ss_pred             ------------cccccceeHHHHhhHH-----------hhcccccHHHHHHHHHhhcCCccc
Confidence                        2245789988543321           222   346677777788887765

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.34  E-value=0.0004  Score=64.94  Aligned_cols=140  Identities=21%  Similarity=0.252  Sum_probs=85.0

Q ss_pred             CCCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHH-----HHHHHHHhhhcCC
Q 038592          262 FRPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAI-----EFLEKLARQIVGK  334 (478)
Q Consensus       262 ~~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~-----~~l~~~~~~~~~~  334 (478)
                      ...+||.+|++-|+.+.++.++.  ..+|.+||+-+.           .+.+.+..+.+|..     +.+.+..      
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~~~~~i~~~~------   85 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPENIKDIRKLL------   85 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEEHSHHGGGSH------
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhhHHHhhhhhc------
Confidence            46899999999999999999887  479999999988           11133444445542     2222210      


Q ss_pred             CCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC----ChHHHHHHHHHccCcCcEEEEEeCCCC
Q 038592          335 NPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF----VRKDVLLAARLILSDFGIFVMNVIPPN  410 (478)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f----~~~efl~~~~~~L~~~Gilv~N~~~~~  410 (478)
                                         .....++|+|+.|+-..  ..|.... .++    +....+..+...|++||.+++-+....
T Consensus        86 -------------------~~~~~~~dlv~~D~~~~--~~g~~~~-d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~  143 (181)
T PF01728_consen   86 -------------------PESGEKFDLVLSDMAPN--VSGDRNI-DEFISIRLILSQLLLALELLKPGGTFVIKVFKGP  143 (181)
T ss_dssp             -------------------GTTTCSESEEEE---------SSHHS-SHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSST
T ss_pred             -------------------cccccCcceeccccccC--CCCchhh-HHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCc
Confidence                               01236899999998211  1111000 011    223445566678999999998777643


Q ss_pred             chHHHHHHHHHHHhcCccEEEeec---ccceEEEE
Q 038592          411 RSFYDMLIQEFRDVFQELYEIDVG---NEENFVLI  442 (478)
Q Consensus       411 ~~~~~~v~~~l~~vF~~v~~~~v~---~~~N~Vl~  442 (478)
                      ..  ..++..++..|..+..++..   ...|+..+
T Consensus       144 ~~--~~~~~~l~~~F~~v~~~Kp~~sr~~s~E~Yl  176 (181)
T PF01728_consen  144 EI--EELIYLLKRCFSKVKIVKPPSSRSESSEEYL  176 (181)
T ss_dssp             TS--HHHHHHHHHHHHHEEEEE-TTSBTTCBEEEE
T ss_pred             cH--HHHHHHHHhCCeEEEEEECcCCCCCccEEEE
Confidence            32  37889999999998887742   34455543

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=97.32  E-value=0.0037  Score=65.27  Aligned_cols=137  Identities=20%  Similarity=0.235  Sum_probs=97.1

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-C--CEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-D--FEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~--~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      ..+||.+..+-|+=+..|.+.. +  ..|+++|+|+.=++..+....-..-.++.++..|+..+....            
T Consensus       157 ge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~------------  224 (355)
T COG0144         157 GERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELL------------  224 (355)
T ss_pred             cCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccc------------
Confidence            4799999999888776777765 3  467999999998888776653222234889999998775431            


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCC-CCCCC-------------CChHHHHHHHHHccCcCcEEEEE
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTS-APPVE-------------FVRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s-~Pp~~-------------f~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                     ....+||.|++|+-++-.  |+. --|..             =++.++|..+.+.|+|||.++.-
T Consensus       225 ---------------~~~~~fD~iLlDaPCSg~--G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYS  287 (355)
T COG0144         225 ---------------PGGEKFDRILLDAPCSGT--GVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYS  287 (355)
T ss_pred             ---------------cccCcCcEEEECCCCCCC--cccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence                           123369999999966532  321 11211             15789999999999999999998


Q ss_pred             eCCCCchHHHHHHHHHHHhcCcc
Q 038592          406 VIPPNRSFYDMLIQEFRDVFQEL  428 (478)
Q Consensus       406 ~~~~~~~~~~~v~~~l~~vF~~v  428 (478)
                      +.+..++--+.++..+-+-.+.+
T Consensus       288 TCS~~~eENE~vV~~~L~~~~~~  310 (355)
T COG0144         288 TCSLTPEENEEVVERFLERHPDF  310 (355)
T ss_pred             ccCCchhcCHHHHHHHHHhCCCc
Confidence            88776655566676666665554

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=97.31  E-value=0.0038  Score=68.20  Aligned_cols=129  Identities=18%  Similarity=0.124  Sum_probs=88.5

Q ss_pred             CCeEEEEeCchhHHHHHHHh-hCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRT-QLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~-~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      .+-+|.||+|.|.....++. +++..+.+||+....+..|-+......-.+++++.+|+..+....              
T Consensus       348 ~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~--------------  413 (506)
T PRK01544        348 RKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDL--------------  413 (506)
T ss_pred             CceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhc--------------
Confidence            57899999998885555555 468999999999987776655432222357899888865544331              


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHH
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEF  421 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l  421 (478)
                                    ++...|-|++--.++.+..-.  ---.+++++|++.+++.|++||.+-  +.+.+.+....++..+
T Consensus       414 --------------~~~sv~~i~i~FPDPWpKkrh--~krRl~~~~fl~~~~~~Lk~gG~i~--~~TD~~~y~~~~~~~~  475 (506)
T PRK01544        414 --------------PNNSLDGIYILFPDPWIKNKQ--KKKRIFNKERLKILQDKLKDNGNLV--FASDIENYFYEAIELI  475 (506)
T ss_pred             --------------CcccccEEEEECCCCCCCCCC--ccccccCHHHHHHHHHhcCCCCEEE--EEcCCHHHHHHHHHHH
Confidence                          456799999965444432111  1234899999999999999999887  4445556555555555


Q ss_pred             HH
Q 038592          422 RD  423 (478)
Q Consensus       422 ~~  423 (478)
                      .+
T Consensus       476 ~~  477 (506)
T PRK01544        476 QQ  477 (506)
T ss_pred             Hh
Confidence            44

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=97.30  E-value=0.0015  Score=66.59  Aligned_cols=79  Identities=19%  Similarity=0.177  Sum_probs=64.0

Q ss_pred             CeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          264 PKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       264 ~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..++..++|+|+-+..+.+..  ..+|.++|.||++++.|++.+.-  ..|++++++|..++.....             
T Consensus        21 ~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~l~-------------   85 (296)
T PRK00050         21 GIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEVLA-------------   85 (296)
T ss_pred             CEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHHHH-------------
Confidence            489999999999998888876  47999999999999999987642  4689999999999865421             


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSG  370 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~  370 (478)
                                   ..-..+|.|++|+..+
T Consensus        86 -------------~~~~~vDgIl~DLGvS  101 (296)
T PRK00050         86 -------------EGLGKVDGILLDLGVS  101 (296)
T ss_pred             -------------cCCCccCEEEECCCcc
Confidence                         0112699999998644

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=97.29  E-value=0.0044  Score=62.69  Aligned_cols=141  Identities=16%  Similarity=0.149  Sum_probs=101.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.+..|-|+=+..+.+..  ...|+++|+++.-+...+..+.-..-..+.+...|+.++....             
T Consensus        86 ~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~-------------  152 (283)
T PF01189_consen   86 GERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKK-------------  152 (283)
T ss_dssp             TSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHH-------------
T ss_pred             cccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccc-------------
Confidence            4689999999998777777776  3799999999999988776653323456888889999986552             


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCC-------------CChHHHHHHHHHcc----CcCcEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVE-------------FVRKDVLLAARLIL----SDFGIFV  403 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~-------------f~~~efl~~~~~~L----~~~Gilv  403 (478)
                                     ....||.|++|+-.+.. +-+.-.|..             .++.+.|..+.+.|    +|||.++
T Consensus       153 ---------------~~~~fd~VlvDaPCSg~-G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lv  216 (283)
T PF01189_consen  153 ---------------PESKFDRVLVDAPCSGL-GTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLV  216 (283)
T ss_dssp             ---------------HTTTEEEEEEECSCCCG-GGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEE
T ss_pred             ---------------cccccchhhcCCCccch-hhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEE
Confidence                           23469999999976542 112222221             15688999999999    9999999


Q ss_pred             EEeCCCCchHHHHHHHHHHHhcCccEEEe
Q 038592          404 MNVIPPNRSFYDMLIQEFRDVFQELYEID  432 (478)
Q Consensus       404 ~N~~~~~~~~~~~v~~~l~~vF~~v~~~~  432 (478)
                      .-+-+-.++--+.+++.+-+.++.....+
T Consensus       217 YsTCS~~~eENE~vV~~fl~~~~~~~l~~  245 (283)
T PF01189_consen  217 YSTCSLSPEENEEVVEKFLKRHPDFELVP  245 (283)
T ss_dssp             EEESHHHGGGTHHHHHHHHHHSTSEEEEC
T ss_pred             EEeccHHHHHHHHHHHHHHHhCCCcEEEe
Confidence            87766555545566776666677655444

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=97.27  E-value=0.00064  Score=60.62  Aligned_cols=92  Identities=18%  Similarity=0.191  Sum_probs=60.2

Q ss_pred             CCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHH
Q 038592          311 EFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLL  390 (478)
Q Consensus       311 ~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~  390 (478)
                      -+++++++|+.+.+.+                             -..++|+|+.|.|++..       .+++.+.++++
T Consensus        31 v~L~L~~gDa~~~l~~-----------------------------l~~~~Da~ylDgFsP~~-------nPelWs~e~~~   74 (124)
T PF05430_consen   31 VTLTLWFGDAREMLPQ-----------------------------LDARFDAWYLDGFSPAK-------NPELWSEELFK   74 (124)
T ss_dssp             EEEEEEES-HHHHHHH-----------------------------B-T-EEEEEE-SS-TTT-------SGGGSSHHHHH
T ss_pred             EEEEEEEcHHHHHHHh-----------------------------CcccCCEEEecCCCCcC-------CcccCCHHHHH
Confidence            3678999999999987                             24689999999998754       34689999999


Q ss_pred             HHHHccCcCcEEEEEeCCCCchHHHHHHHHHHHh-cCccEEEeecccceEEEEEEc
Q 038592          391 AARLILSDFGIFVMNVIPPNRSFYDMLIQEFRDV-FQELYEIDVGNEENFVLIATG  445 (478)
Q Consensus       391 ~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l~~v-F~~v~~~~v~~~~N~Vl~a~~  445 (478)
                      .++++++++|+++..  +....    |.+.|.+. | .|...+-....-..+.|++
T Consensus        75 ~l~~~~~~~~~l~Ty--s~a~~----Vr~~L~~aGF-~v~~~~g~g~Kr~~~~a~~  123 (124)
T PF05430_consen   75 KLARLSKPGGTLATY--SSAGA----VRRALQQAGF-EVEKVPGFGRKREMLRAVK  123 (124)
T ss_dssp             HHHHHEEEEEEEEES----BHH----HHHHHHHCTE-EEEEEE-STTSSEEEEEEC
T ss_pred             HHHHHhCCCcEEEEe--echHH----HHHHHHHcCC-EEEEcCCCCCcchheEEEc
Confidence            999999999998843  33222    44455555 4 3555553333455566553

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=97.25  E-value=0.0021  Score=72.34  Aligned_cols=108  Identities=19%  Similarity=0.146  Sum_probs=74.5

Q ss_pred             CCeEEEEeCchhHHHH----HHHh----hC-----CCEEEEEECChH---HHHHH-----------HHhc--------CC
Q 038592          263 RPKALCVGVGGGALVS----FLRT----QL-----DFEVVGVEMDEV---VLRVA-----------RQYF--------GL  307 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~----~L~~----~~-----~~~V~~VEiDp~---Vl~vA-----------~~~F--------g~  307 (478)
                      .-+|+.+|.|.|.-..    .+.+    .+     ..++..+|.+|.   -+..+           ++..        |+
T Consensus        58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~  137 (662)
T PRK01747         58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC  137 (662)
T ss_pred             cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence            5789999999997222    2211    11     258999998762   22211           1111        11


Q ss_pred             C----CCC--CeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCC
Q 038592          308 E----DGE--FLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPV  381 (478)
Q Consensus       308 ~----~d~--rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~  381 (478)
                      .    ++.  +++++++|+.+.+.++                             ..++|+|++|.|++..       .+
T Consensus       138 ~~~~~~~~~~~l~l~~gd~~~~~~~~-----------------------------~~~~d~~~lD~FsP~~-------np  181 (662)
T PRK01747        138 HRLLFDDGRVTLDLWFGDANELLPQL-----------------------------DARADAWFLDGFAPAK-------NP  181 (662)
T ss_pred             eEEEecCCcEEEEEEecCHHHHHHhc-----------------------------cccccEEEeCCCCCcc-------Ch
Confidence            0    122  5678999999998762                             3569999999998754       34


Q ss_pred             CCChHHHHHHHHHccCcCcEEEEEe
Q 038592          382 EFVRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       382 ~f~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                      ++-+.++|..++++++++|+++...
T Consensus       182 ~~W~~~~~~~l~~~~~~~~~~~t~t  206 (662)
T PRK01747        182 DMWSPNLFNALARLARPGATLATFT  206 (662)
T ss_pred             hhccHHHHHHHHHHhCCCCEEEEee
Confidence            6899999999999999999999654

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=97.22  E-value=0.0011  Score=66.06  Aligned_cols=60  Identities=30%  Similarity=0.315  Sum_probs=50.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHH-HHHhcCCCCCCCeEEEEchHHHH
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRV-ARQYFGLEDGEFLQVSVGDAIEF  323 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~v-A~~~Fg~~~d~rl~v~v~Dg~~~  323 (478)
                      +--||.+|-|+|.|+.-|.+. +.+|.+||+||.++.- .++.-|.+...+++|+++|.+..
T Consensus        59 tD~VLEvGPGTGnLT~~lLe~-~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~  119 (315)
T KOG0820|consen   59 TDVVLEVGPGTGNLTVKLLEA-GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKT  119 (315)
T ss_pred             CCEEEEeCCCCCHHHHHHHHh-cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccC
Confidence            457999999999999988875 7899999999998875 55555777678999999998764

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.22  E-value=0.0062  Score=57.64  Aligned_cols=122  Identities=17%  Similarity=0.262  Sum_probs=88.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      +.=+|.||+|.|....||.+..  +....+.||+|.-+++.++-... +..++.+++.|-..-++               
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~-n~~~~~~V~tdl~~~l~---------------  107 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARC-NRVHIDVVRTDLLSGLR---------------  107 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHh-cCCccceeehhHHhhhc---------------
Confidence            5679999999999999999975  47889999999999986654322 24568899999888774               


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC-----------------ChHHHHHHHHHccCcCcEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF-----------------VRKDVLLAARLILSDFGIFV  403 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f-----------------~~~efl~~~~~~L~~~Gilv  403 (478)
                                      .++.|+++..-   ..   +..++...                 ....++..+..+|+|.|+|-
T Consensus       108 ----------------~~~VDvLvfNP---PY---Vpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Y  165 (209)
T KOG3191|consen  108 ----------------NESVDVLVFNP---PY---VPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFY  165 (209)
T ss_pred             ----------------cCCccEEEECC---Cc---CcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEE
Confidence                            26789888732   11   11112211                 35678888999999999999


Q ss_pred             EEeCCCCchHHHHHHHHHHHh
Q 038592          404 MNVIPPNRSFYDMLIQEFRDV  424 (478)
Q Consensus       404 ~N~~~~~~~~~~~v~~~l~~v  424 (478)
                      ++...++.  .++++..++.-
T Consensus       166 lv~~~~N~--p~ei~k~l~~~  184 (209)
T KOG3191|consen  166 LVALRANK--PKEILKILEKK  184 (209)
T ss_pred             eeehhhcC--HHHHHHHHhhc
Confidence            98887754  34566655543

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=96.97  E-value=0.0015  Score=63.01  Aligned_cols=96  Identities=25%  Similarity=0.297  Sum_probs=70.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ...|+.+-+|-|..+..++++. ...|.++|++|..++..++...+. -..++.++.+|+.+++.               
T Consensus       102 ~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~---------------  166 (200)
T PF02475_consen  102 GEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP---------------  166 (200)
T ss_dssp             T-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG------------------
T ss_pred             ceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC---------------
Confidence            4699999999999887777754 578999999999999998876543 24679999999999963               


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFV  403 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv  403 (478)
                                      ...+|-|+++.            |.  .+.+||..+..+++++|++-
T Consensus       167 ----------------~~~~drvim~l------------p~--~~~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  167 ----------------EGKFDRVIMNL------------PE--SSLEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             ----------------TT-EEEEEE--------------TS--SGGGGHHHHHHHEEEEEEEE
T ss_pred             ----------------ccccCEEEECC------------hH--HHHHHHHHHHHHhcCCcEEE
Confidence                            45799999954            21  23579999999999999874

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=96.93  E-value=0.0036  Score=62.91  Aligned_cols=123  Identities=20%  Similarity=0.232  Sum_probs=73.1

Q ss_pred             CCCeEEEEeCchh----HHHHHHHhhC------CCEEEEEECChHHHHHHHHhc-C-------CCCC--CCeEEEEchH-
Q 038592          262 FRPKALCVGVGGG----ALVSFLRTQL------DFEVVGVEMDEVVLRVARQYF-G-------LEDG--EFLQVSVGDA-  320 (478)
Q Consensus       262 ~~~~VLvIGlGgG----~L~~~L~~~~------~~~V~~VEiDp~Vl~vA~~~F-g-------~~~d--~rl~v~v~Dg-  320 (478)
                      .+.||...||++|    ++++.|.+.+      .++|++.|||..+++.|+.-- +       ++..  .+.=...+|+ 
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~  175 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS  175 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence            3789999999999    7999998875      379999999999999998521 1       0000  0111122222 


Q ss_pred             HHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCc
Q 038592          321 IEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFG  400 (478)
Q Consensus       321 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~G  400 (478)
                      .++-+++.+.           .-++.++...... ..+.||+|++=    +..-.+..+    .....+...+..|+|||
T Consensus       176 y~v~~~ir~~-----------V~F~~~NLl~~~~-~~~~fD~IfCR----NVLIYFd~~----~q~~il~~f~~~L~~gG  235 (268)
T COG1352         176 YRVKEELRKM-----------VRFRRHNLLDDSP-FLGKFDLIFCR----NVLIYFDEE----TQERILRRFADSLKPGG  235 (268)
T ss_pred             EEEChHHhcc-----------cEEeecCCCCCcc-ccCCCCEEEEc----ceEEeeCHH----HHHHHHHHHHHHhCCCC
Confidence            1111111000           0022333333222 45679999981    111011111    46889999999999999


Q ss_pred             EEEE
Q 038592          401 IFVM  404 (478)
Q Consensus       401 ilv~  404 (478)
                      +|++
T Consensus       236 ~Lfl  239 (268)
T COG1352         236 LLFL  239 (268)
T ss_pred             EEEE
Confidence            9996

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=96.93  E-value=0.0013  Score=65.58  Aligned_cols=58  Identities=26%  Similarity=0.359  Sum_probs=52.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHH
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEF  323 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~  323 (478)
                      ...|+.||.|.|.++..|.+.. .++++||+|+...+.-++.|.  .+++++++.+|+.++
T Consensus        31 ~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~   88 (262)
T PF00398_consen   31 GDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKW   88 (262)
T ss_dssp             TSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTS
T ss_pred             CCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhh--hcccceeeecchhcc
Confidence            5699999999999999998876 899999999999999999887  578999999999987

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.93  E-value=0.0013  Score=63.16  Aligned_cols=42  Identities=24%  Similarity=0.389  Sum_probs=33.5

Q ss_pred             CCCeEEEEeCchh----HHHHHHHhhC------CCEEEEEECChHHHHHHHH
Q 038592          262 FRPKALCVGVGGG----ALVSFLRTQL------DFEVVGVEMDEVVLRVARQ  303 (478)
Q Consensus       262 ~~~~VLvIGlGgG----~L~~~L~~~~------~~~V~~VEiDp~Vl~vA~~  303 (478)
                      .+.||+..||++|    ++++.|.+..      .++|.+.|||+.+++.|++
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~   82 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA   82 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh
Confidence            4789999999999    6888888831      3699999999999999975

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PRK10742 putative methyltransferase; Provisional

Probab=96.80  E-value=0.0051  Score=61.01  Aligned_cols=65  Identities=18%  Similarity=0.154  Sum_probs=52.5

Q ss_pred             CCCCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-------C--CCCeEEEEchHHHHHHH
Q 038592          261 GFRPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-------D--GEFLQVSVGDAIEFLEK  326 (478)
Q Consensus       261 g~~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-------~--d~rl~v~v~Dg~~~l~~  326 (478)
                      |..++||.+=+|.|..+..+... +++|++||-+|.+..+-++-+...       .  ..|++++.+|+.+|+++
T Consensus        87 g~~p~VLD~TAGlG~Da~~las~-G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~  160 (250)
T PRK10742         87 DYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD  160 (250)
T ss_pred             CCCCEEEECCCCccHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhh
Confidence            34569999999999999776654 788999999999999887655421       1  15799999999999976

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=96.67  E-value=0.033  Score=53.00  Aligned_cols=120  Identities=24%  Similarity=0.218  Sum_probs=80.6

Q ss_pred             hhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhh-CCCEEEEEECChHHHH---HHHHhcCCCCCCC
Q 038592          237 HVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQ-LDFEVVGVEMDEVVLR---VARQYFGLEDGEF  312 (478)
Q Consensus       237 ~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~-~~~~V~~VEiDp~Vl~---vA~~~Fg~~~d~r  312 (478)
                      --|.+-+..++.+++.- .     ....+++.||.|+|.=+.-|.=. ++.+++.||-...=+.   .+.+.+++   ++
T Consensus        29 ~~~~~Hi~DSL~~~~~~-~-----~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L---~n   99 (184)
T PF02527_consen   29 EIWERHILDSLALLPFL-P-----DFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL---SN   99 (184)
T ss_dssp             HHHHHHHHHHHGGGGCS-------CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT----SS
T ss_pred             HHHHHHHHHHHHhhhhh-c-----cCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC---CC
Confidence            34555666666665421 1     11338999999999644434333 5789999999987555   44566776   36


Q ss_pred             eEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHH
Q 038592          313 LQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAA  392 (478)
Q Consensus       313 l~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~  392 (478)
                      ++++.+.+-+  .                             ....+||+|+.=+.++              -..++..+
T Consensus       100 v~v~~~R~E~--~-----------------------------~~~~~fd~v~aRAv~~--------------l~~l~~~~  134 (184)
T PF02527_consen  100 VEVINGRAEE--P-----------------------------EYRESFDVVTARAVAP--------------LDKLLELA  134 (184)
T ss_dssp             EEEEES-HHH--T-----------------------------TTTT-EEEEEEESSSS--------------HHHHHHHH
T ss_pred             EEEEEeeecc--c-----------------------------ccCCCccEEEeehhcC--------------HHHHHHHH
Confidence            9999999888  1                             1567899999965432              15788999


Q ss_pred             HHccCcCcEEEEEeCCCC
Q 038592          393 RLILSDFGIFVMNVIPPN  410 (478)
Q Consensus       393 ~~~L~~~Gilv~N~~~~~  410 (478)
                      ...|+++|.+++--....
T Consensus       135 ~~~l~~~G~~l~~KG~~~  152 (184)
T PF02527_consen  135 RPLLKPGGRLLAYKGPDA  152 (184)
T ss_dssp             GGGEEEEEEEEEEESS--
T ss_pred             HHhcCCCCEEEEEcCCCh
Confidence            999999999997766543

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=96.63  E-value=0.0088  Score=60.74  Aligned_cols=42  Identities=21%  Similarity=0.309  Sum_probs=36.4

Q ss_pred             CCeEEEEeCchh----HHHHHHHhhC-----CCEEEEEECChHHHHHHHHh
Q 038592          263 RPKALCVGVGGG----ALVSFLRTQL-----DFEVVGVEMDEVVLRVARQY  304 (478)
Q Consensus       263 ~~~VLvIGlGgG----~L~~~L~~~~-----~~~V~~VEiDp~Vl~vA~~~  304 (478)
                      +.||+..||.+|    +++|.|.+..     +++|++.|||+.+++.|++-
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G  166 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG  166 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC
Confidence            579999999999    6899888853     36899999999999999753

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=96.56  E-value=0.012  Score=60.48  Aligned_cols=99  Identities=26%  Similarity=0.292  Sum_probs=70.1

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC-CCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL-EDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~-~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      .+-||.+|+|.|.|.+|..+.-..+|.+||.++ |.+.|++-..- .-.+|+.|+-|-..+.                  
T Consensus       178 ~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdi------------------  238 (517)
T KOG1500|consen  178 DKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDI------------------  238 (517)
T ss_pred             CcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCccccc------------------
Confidence            467899999999999998877567999999874 67777765432 1246888887765443                  


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHH---HHHHHccCcCcEEEE
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVL---LAARLILSDFGIFVM  404 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl---~~~~~~L~~~Gilv~  404 (478)
                                   .-.++.|+||..     +++.|      |+++..|   ..+++.|+|+|.+.=
T Consensus       239 -------------eLPEk~DviISE-----PMG~m------L~NERMLEsYl~Ark~l~P~GkMfP  280 (517)
T KOG1500|consen  239 -------------ELPEKVDVIISE-----PMGYM------LVNERMLESYLHARKWLKPNGKMFP  280 (517)
T ss_pred             -------------cCchhccEEEec-----cchhh------hhhHHHHHHHHHHHhhcCCCCcccC
Confidence                         145789999983     33222      4555444   456789999997753

>PRK04148 hypothetical protein; Provisional

Probab=96.45  E-value=0.0095  Score=53.83  Aligned_cols=53  Identities=21%  Similarity=0.286  Sum_probs=44.3

Q ss_pred             CCeEEEEeCchhH-HHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHH
Q 038592          263 RPKALCVGVGGGA-LVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEF  323 (478)
Q Consensus       263 ~~~VLvIGlGgG~-L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~  323 (478)
                      ..++|+||+|.|. ++..|.+ .+.+|+++|++|..++.|++.       .++++++|..+-
T Consensus        17 ~~kileIG~GfG~~vA~~L~~-~G~~ViaIDi~~~aV~~a~~~-------~~~~v~dDlf~p   70 (134)
T PRK04148         17 NKKIVELGIGFYFKVAKKLKE-SGFDVIVIDINEKAVEKAKKL-------GLNAFVDDLFNP   70 (134)
T ss_pred             CCEEEEEEecCCHHHHHHHHH-CCCEEEEEECCHHHHHHHHHh-------CCeEEECcCCCC
Confidence            4789999999995 8888875 488999999999999999776       257888887753

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=96.44  E-value=0.031  Score=56.04  Aligned_cols=127  Identities=21%  Similarity=0.194  Sum_probs=87.7

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      ...|+.-|.|.|+++.++.+..  ..++...|.++.-.+-|++.|.-. -+.++++.+.|.-.-              .|
T Consensus       106 GsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~--------------GF  171 (314)
T KOG2915|consen  106 GSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGS--------------GF  171 (314)
T ss_pred             CCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccC--------------Cc
Confidence            3589999999999999998875  479999999999999999998533 346788888775321              11


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHH
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQ  419 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~  419 (478)
                      +              .....+|+|++|+-+++               +.+-.+..+|+.+|.-++++. +--+..+...+
T Consensus       172 ~--------------~ks~~aDaVFLDlPaPw---------------~AiPha~~~lk~~g~r~csFS-PCIEQvqrtce  221 (314)
T KOG2915|consen  172 L--------------IKSLKADAVFLDLPAPW---------------EAIPHAAKILKDEGGRLCSFS-PCIEQVQRTCE  221 (314)
T ss_pred             c--------------ccccccceEEEcCCChh---------------hhhhhhHHHhhhcCceEEecc-HHHHHHHHHHH
Confidence            1              13567999999985543               344445668988887666653 22344455555


Q ss_pred             HHHH-hcCccEEEee
Q 038592          420 EFRD-VFQELYEIDV  433 (478)
Q Consensus       420 ~l~~-vF~~v~~~~v  433 (478)
                      .|++ =|-++..+.+
T Consensus       222 ~l~~~gf~~i~~vEv  236 (314)
T KOG2915|consen  222 ALRSLGFIEIETVEV  236 (314)
T ss_pred             HHHhCCCceEEEEEe
Confidence            6665 3665554443

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.37  E-value=0.017  Score=58.80  Aligned_cols=102  Identities=16%  Similarity=0.171  Sum_probs=68.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHH---HHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLR---VARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~---vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      .++||.||+|.|+..-.+...-...|.++|-++.-.-   .++++.|.  +. .......|++.+..             
T Consensus       116 gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~--~~-~~~~lplgvE~Lp~-------------  179 (315)
T PF08003_consen  116 GKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQ--DP-PVFELPLGVEDLPN-------------  179 (315)
T ss_pred             CCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCC--Cc-cEEEcCcchhhccc-------------
Confidence            5799999999999775555443468999998876554   44566553  22 23334567777632             


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeC
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVI  407 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~  407 (478)
                                       .+.||+||.=  .--+  .+..|      -+.|..+++.|++||.+++...
T Consensus       180 -----------------~~~FDtVF~M--GVLY--Hrr~P------l~~L~~Lk~~L~~gGeLvLETl  220 (315)
T PF08003_consen  180 -----------------LGAFDTVFSM--GVLY--HRRSP------LDHLKQLKDSLRPGGELVLETL  220 (315)
T ss_pred             -----------------cCCcCEEEEe--eehh--ccCCH------HHHHHHHHHhhCCCCEEEEEEe
Confidence                             4579999981  0000  01223      6789999999999999998553

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=96.24  E-value=0.0067  Score=56.60  Aligned_cols=61  Identities=18%  Similarity=0.194  Sum_probs=44.5

Q ss_pred             eEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHH
Q 038592          265 KALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEK  326 (478)
Q Consensus       265 ~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~  326 (478)
                      .|+.+.+|.|+-+..+++. ..+|++||+||.-++.|+.....- ..++++++++|..+++++
T Consensus         2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~   63 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKR   63 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGG
T ss_pred             EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhh
Confidence            4677888888877666665 358999999999999999765321 257899999999998754

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=96.22  E-value=0.0085  Score=62.06  Aligned_cols=146  Identities=19%  Similarity=0.268  Sum_probs=88.5

Q ss_pred             CCCeEEEEeCc-hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhc-CCC---------CCCCeEEEEchHHHH-HHHHHh
Q 038592          262 FRPKALCVGVG-GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYF-GLE---------DGEFLQVSVGDAIEF-LEKLAR  329 (478)
Q Consensus       262 ~~~~VLvIGlG-gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~F-g~~---------~d~rl~v~v~Dg~~~-l~~~~~  329 (478)
                      ...+||.||+| ||=|..|.... -..++++||+++.++-|++.. .+.         .+-...++.+|...- |.+.  
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~--  138 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREK--  138 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCT--
T ss_pred             CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhh--
Confidence            36799999999 66688887642 369999999999999998655 110         012346677777632 1110  


Q ss_pred             hhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCC----hHHHHHHHHHccCcCcEEEEE
Q 038592          330 QIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFV----RKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~----~~efl~~~~~~L~~~Gilv~N  405 (478)
                                             -.....+||+|=+=.          |-.-.|-    -..||+++.+.|+|||+|+.-
T Consensus       139 -----------------------~~~~~~~FDvVScQF----------alHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT  185 (331)
T PF03291_consen  139 -----------------------LPPRSRKFDVVSCQF----------ALHYAFESEEKARQFLKNVSSLLKPGGYFIGT  185 (331)
T ss_dssp             -----------------------SSSTTS-EEEEEEES-----------GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             -----------------------ccccCCCcceeehHH----------HHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence                                   001236899998821          1122232    356999999999999999977


Q ss_pred             eCCCCchHHHHHHHHHHH--------hcC-ccEEEeeccc------ceEEEEEEcCCC
Q 038592          406 VIPPNRSFYDMLIQEFRD--------VFQ-ELYEIDVGNE------ENFVLIATGLSI  448 (478)
Q Consensus       406 ~~~~~~~~~~~v~~~l~~--------vF~-~v~~~~v~~~------~N~Vl~a~~~~~  448 (478)
                      +++.     ..++.+|++        .|+ .+|.+....+      ++...|.....+
T Consensus       186 ~~d~-----~~i~~~l~~~~~~~~~~~~gN~~y~I~f~~~~~~~~fG~~Y~F~L~~~v  238 (331)
T PF03291_consen  186 TPDS-----DEIVKRLREKKSNSEKKKFGNSVYSIEFDSDDFFPPFGAKYDFYLEDAV  238 (331)
T ss_dssp             EE-H-----HHHHCCHHC-EEECCCSCSETSSEEEEESCCSS--CTTEEEEEEETTCS
T ss_pred             ecCH-----HHHHHHHHhhcccccccccCCccEEEEecccCCCCCCCcEEEEEecCcC
Confidence            6543     233455555        233 4777776555      666666654443

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=96.20  E-value=0.031  Score=55.78  Aligned_cols=94  Identities=24%  Similarity=0.278  Sum_probs=65.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..++|.||.|.|..+.-+..++ .+|.+-|+++.|...-++. |      .+|+  |..+|- +                
T Consensus        95 ~~~lLDlGAGdG~VT~~l~~~f-~~v~aTE~S~~Mr~rL~~k-g------~~vl--~~~~w~-~----------------  147 (265)
T PF05219_consen   95 DKSLLDLGAGDGEVTERLAPLF-KEVYATEASPPMRWRLSKK-G------FTVL--DIDDWQ-Q----------------  147 (265)
T ss_pred             CCceEEecCCCcHHHHHHHhhc-ceEEeecCCHHHHHHHHhC-C------CeEE--ehhhhh-c----------------
Confidence            5689999999999998887665 3699999999997654432 3      2344  233341 1                


Q ss_pred             cccCCCccCCCCCCCCceeEEEE-eCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMV-DLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVI  407 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIiv-Dv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~  407 (478)
                                   .+.+||+|.+ .+-  |-     |    .--...|+.+++.|+|+|++++-++
T Consensus       148 -------------~~~~fDvIscLNvL--DR-----c----~~P~~LL~~i~~~l~p~G~lilAvV  189 (265)
T PF05219_consen  148 -------------TDFKFDVISCLNVL--DR-----C----DRPLTLLRDIRRALKPNGRLILAVV  189 (265)
T ss_pred             -------------cCCceEEEeehhhh--hc-----c----CCHHHHHHHHHHHhCCCCEEEEEEE
Confidence                         3567999986 111  10     0    1126789999999999999998664

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=96.16  E-value=0.011  Score=61.03  Aligned_cols=99  Identities=22%  Similarity=0.264  Sum_probs=69.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      .+.||.+|+|+|.|++|.++....+|.+||.+... +.|++-+... -+..++++.+..-+.  ++              
T Consensus        61 dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi--~L--------------  123 (346)
T KOG1499|consen   61 DKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDI--EL--------------  123 (346)
T ss_pred             CCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEE--ec--------------
Confidence            57899999999999999999877899999988776 8887765432 234677777766555  21              


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHH----HHccCcCcEEE
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAA----RLILSDFGIFV  403 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~----~~~L~~~Gilv  403 (478)
                                    +-+++|+|+..--      |     -.++-++.|..+    -+.|+|||++.
T Consensus       124 --------------P~eKVDiIvSEWM------G-----y~Ll~EsMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  124 --------------PVEKVDIIVSEWM------G-----YFLLYESMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             --------------CccceeEEeehhh------h-----HHHHHhhhhhhhhhhhhhccCCCceEc
Confidence                          4578999998421      1     112334444433    36799999875

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.15  E-value=0.053  Score=58.20  Aligned_cols=111  Identities=22%  Similarity=0.203  Sum_probs=82.7

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+++.+=||.|..+..|.+. ..+|.+||++++.++.|++.-....-.+++++.+|+.++..+.               
T Consensus       294 ~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~---------------  357 (432)
T COG2265         294 GERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAW---------------  357 (432)
T ss_pred             CCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhc---------------
Confidence            468999999999999888843 4799999999999999998876554456999999999998652               


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHH
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDM  416 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~  416 (478)
                                  .....+|+|++|            ||-.=.++++++.+.+.-.+ .  |+.+.|....+.+.
T Consensus       358 ------------~~~~~~d~VvvD------------PPR~G~~~~~lk~l~~~~p~-~--IvYVSCNP~TlaRD  404 (432)
T COG2265         358 ------------WEGYKPDVVVVD------------PPRAGADREVLKQLAKLKPK-R--IVYVSCNPATLARD  404 (432)
T ss_pred             ------------cccCCCCEEEEC------------CCCCCCCHHHHHHHHhcCCC-c--EEEEeCCHHHHHHH
Confidence                        134679999997            33333567888887765543 3  45566664444433

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=96.05  E-value=0.04  Score=54.45  Aligned_cols=106  Identities=23%  Similarity=0.194  Sum_probs=57.5

Q ss_pred             CCeEEEEeCchhH-HHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGA-LVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~-L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      .++||++|=..-. ++..| .+++.+|++||||+.+++.-++...- .+-.++.+..|.++=+.+               
T Consensus        45 gk~il~lGDDDLtSlA~al-~~~~~~I~VvDiDeRll~fI~~~a~~-~gl~i~~~~~DlR~~LP~---------------  107 (243)
T PF01861_consen   45 GKRILFLGDDDLTSLALAL-TGLPKRITVVDIDERLLDFINRVAEE-EGLPIEAVHYDLRDPLPE---------------  107 (243)
T ss_dssp             T-EEEEES-TT-HHHHHHH-HT--SEEEEE-S-HHHHHHHHHHHHH-HT--EEEE---TTS---T---------------
T ss_pred             CCEEEEEcCCcHHHHHHHh-hCCCCeEEEEEcCHHHHHHHHHHHHH-cCCceEEEEecccccCCH---------------
Confidence            5899999977654 55444 34578999999999999865543211 112399999999887643               


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCCh-HHHHHHHHHccCcCc-EEEEEeCCCC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVR-KDVLLAARLILSDFG-IFVMNVIPPN  410 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~-~efl~~~~~~L~~~G-ilv~N~~~~~  410 (478)
                                   .-..+||+++.|            ||...-. .-|+....+.|+..| ...+.+....
T Consensus       108 -------------~~~~~fD~f~TD------------PPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~  153 (243)
T PF01861_consen  108 -------------ELRGKFDVFFTD------------PPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKE  153 (243)
T ss_dssp             -------------TTSS-BSEEEE---------------SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT
T ss_pred             -------------HHhcCCCEEEeC------------CCCCHHHHHHHHHHHHHHhCCCCceEEEEEecCc
Confidence                         145789999997            3432211 458888889998766 5555555443

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>TIGR00478 tly hemolysin TlyA family protein

Probab=96.04  E-value=0.013  Score=57.52  Aligned_cols=38  Identities=24%  Similarity=0.187  Sum_probs=32.7

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHH
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRV  300 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~v  300 (478)
                      ...||.+|+|+|.++.++.+....+|++||+++.++..
T Consensus        76 ~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~  113 (228)
T TIGR00478        76 NKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE  113 (228)
T ss_pred             CCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence            46899999999999999988744699999999977765

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=95.97  E-value=0.02  Score=59.16  Aligned_cols=95  Identities=24%  Similarity=0.296  Sum_probs=68.4

Q ss_pred             CeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCccc
Q 038592          264 PKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACS  343 (478)
Q Consensus       264 ~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~  343 (478)
                      ...+.+|+|.|.+...+..+++ +|.+|+.|..-+..+..+++ +   .++-+.+|+++=+                   
T Consensus       179 ~~avDvGgGiG~v~k~ll~~fp-~ik~infdlp~v~~~a~~~~-~---gV~~v~gdmfq~~-------------------  234 (342)
T KOG3178|consen  179 NVAVDVGGGIGRVLKNLLSKYP-HIKGINFDLPFVLAAAPYLA-P---GVEHVAGDMFQDT-------------------  234 (342)
T ss_pred             ceEEEcCCcHhHHHHHHHHhCC-CCceeecCHHHHHhhhhhhc-C---CcceecccccccC-------------------
Confidence            4678899999998888777543 59999999887777777765 2   2677777877532                   


Q ss_pred             ccCCCccCCCCCCCCceeEEEE-----eCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE--EeCCC
Q 038592          344 LKDGNFLDNSDRVDNKFDVIMV-----DLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM--NVIPP  409 (478)
Q Consensus       344 ~~~~~~~~~~~~~~~~yDvIiv-----Dv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~--N~~~~  409 (478)
                                    ++-|+|++     |..+.|             -..||++|++.|.|+|.+++  |+.+.
T Consensus       235 --------------P~~daI~mkWiLhdwtDed-------------cvkiLknC~~sL~~~GkIiv~E~V~p~  280 (342)
T KOG3178|consen  235 --------------PKGDAIWMKWILHDWTDED-------------CVKILKNCKKSLPPGGKIIVVENVTPE  280 (342)
T ss_pred             --------------CCcCeEEEEeecccCChHH-------------HHHHHHHHHHhCCCCCEEEEEeccCCC
Confidence                          23458887     332222             26899999999999998876  65553

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=95.92  E-value=0.026  Score=61.77  Aligned_cols=61  Identities=16%  Similarity=0.255  Sum_probs=45.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC---------CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHH
Q 038592          263 RPKALCVGVGGGALVSFLRTQL---------DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEF  323 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~---------~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~  323 (478)
                      ..+||..|+|+|.+...+..+.         ...+.++|||+..+..|+..+........+++.+|.+..
T Consensus        32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~  101 (524)
T TIGR02987        32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSY  101 (524)
T ss_pred             ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccc
Confidence            5699999999998766555432         158899999999999998765433233467777777754

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.91  E-value=0.07  Score=54.82  Aligned_cols=105  Identities=22%  Similarity=0.196  Sum_probs=68.8

Q ss_pred             CCeEEEEeCc-hhHHHHHHHhhCC-CEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVG-GGALVSFLRTQLD-FEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlG-gG~L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+|||+|.| .|.++...++.++ .+|.++|+++.-+++|++ ||...-  ...-..+-.+.+.+.....         
T Consensus       170 Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~~--~~~~~~~~~~~~~~~v~~~---------  237 (354)
T KOG0024|consen  170 GSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATVT--DPSSHKSSPQELAELVEKA---------  237 (354)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeEE--eeccccccHHHHHHHHHhh---------
Confidence            5699999999 6777877777786 699999999999999999 887421  1111212233444433221         


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                    ..+..+|+.|-  .++-              ...++.+-..++.+|.+++--+..
T Consensus       238 --------------~g~~~~d~~~d--CsG~--------------~~~~~aai~a~r~gGt~vlvg~g~  276 (354)
T KOG0024|consen  238 --------------LGKKQPDVTFD--CSGA--------------EVTIRAAIKATRSGGTVVLVGMGA  276 (354)
T ss_pred             --------------ccccCCCeEEE--ccCc--------------hHHHHHHHHHhccCCEEEEeccCC
Confidence                          12345887775  2221              346777889999999965544433

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=95.73  E-value=0.02  Score=61.79  Aligned_cols=151  Identities=15%  Similarity=0.151  Sum_probs=97.4

Q ss_pred             hcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhh----C-CCEEEEEECChHHHHHHHHhcCCC-CCC
Q 038592          238 VYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQ----L-DFEVVGVEMDEVVLRVARQYFGLE-DGE  311 (478)
Q Consensus       238 ~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~----~-~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~  311 (478)
                      .|.+++..+|.=..+.    .++.+...++++|+|-|=|.....+.    . .+++.+||-+|..+-.-+. -.+. .+.
T Consensus       347 ~Yq~Ai~~AL~Drvpd----~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~  421 (649)
T KOG0822|consen  347 QYQQAILKALLDRVPD----ESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDN  421 (649)
T ss_pred             HHHHHHHHHHHhhCcc----cccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcC
Confidence            4667777775422221    11122567889999999877654443    1 3799999999987765543 2322 478


Q ss_pred             CeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHH
Q 038592          312 FLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLA  391 (478)
Q Consensus       312 rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~  391 (478)
                      +++++-+|.+.|-                              .+..+.|+|+..+-.+..        ..=+++|.|.-
T Consensus       422 ~Vtii~~DMR~w~------------------------------ap~eq~DI~VSELLGSFG--------DNELSPECLDG  463 (649)
T KOG0822|consen  422 RVTIISSDMRKWN------------------------------APREQADIIVSELLGSFG--------DNELSPECLDG  463 (649)
T ss_pred             eeEEEeccccccC------------------------------CchhhccchHHHhhcccc--------CccCCHHHHHH
Confidence            9999999999993                              124678999876644432        12267999999


Q ss_pred             HHHccCcCcEEEEEeCC----C--CchHHHHHHHHHHH--hcCccEEEe
Q 038592          392 ARLILSDFGIFVMNVIP----P--NRSFYDMLIQEFRD--VFQELYEID  432 (478)
Q Consensus       392 ~~~~L~~~Gilv~N~~~----~--~~~~~~~v~~~l~~--vF~~v~~~~  432 (478)
                      +.+.|+|+|+.+=.-..    +  ++.+++. +..+..  .|...|...
T Consensus       464 ~q~fLkpdgIsIP~sYtSyi~PImS~~l~q~-v~a~~~~~~fe~~YVV~  511 (649)
T KOG0822|consen  464 AQKFLKPDGISIPSSYTSYIAPIMSPKLYQE-VKATNDPNAFEAPYVVL  511 (649)
T ss_pred             HHhhcCCCceEccchhhhhhcccccHHHHHH-HHhcCCccccccceEEE
Confidence            99999999998732211    1  3333333 344444  677666544

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=95.63  E-value=0.029  Score=58.12  Aligned_cols=110  Identities=22%  Similarity=0.164  Sum_probs=72.6

Q ss_pred             CeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEc-hHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          264 PKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVG-DAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       264 ~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~-Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..||.==||+|+...... .++.++.+.|||..|++-|+..+..-.-+...++.. |+... .                 
T Consensus       199 ~~vlDPFcGTGgiLiEag-l~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~l-p-----------------  259 (347)
T COG1041         199 ELVLDPFCGTGGILIEAG-LMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNL-P-----------------  259 (347)
T ss_pred             CEeecCcCCccHHHHhhh-hcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccC-C-----------------
Confidence            478887889898664433 348999999999999999996553211122333333 76643 1                 


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCC--CChHHHHHHHHHccCcCcEEEEEeC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVE--FVRKDVLLAARLILSDFGIFVMNVI  407 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~--f~~~efl~~~~~~L~~~Gilv~N~~  407 (478)
                                  -.+..+|+|+.|..=+-.+.   .....  =+-.++|+.+.+.|++||.+++...
T Consensus       260 ------------l~~~~vdaIatDPPYGrst~---~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p  311 (347)
T COG1041         260 ------------LRDNSVDAIATDPPYGRSTK---IKGEGLDELYEEALESASEVLKPGGRIVFAAP  311 (347)
T ss_pred             ------------CCCCccceEEecCCCCcccc---cccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence                        13457999999864332210   01111  1237899999999999999997665

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=95.61  E-value=0.11  Score=54.11  Aligned_cols=119  Identities=17%  Similarity=0.171  Sum_probs=89.7

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCC-CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLED-GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~-d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ...|+..=.|-|..+.-++.+-..+|.++||+|.-++..++...+.. ..++..+.+|+.+++.+               
T Consensus       189 GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~---------------  253 (341)
T COG2520         189 GETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPE---------------  253 (341)
T ss_pred             CCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhc---------------
Confidence            46899999999987766666544459999999999999999987753 35699999999999744               


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHH
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEF  421 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l  421 (478)
                                     -..+|-|++-.           |+   .+.+|+..+.++|+++|++-+....++..........+
T Consensus       254 ---------------~~~aDrIim~~-----------p~---~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i  304 (341)
T COG2520         254 ---------------LGVADRIIMGL-----------PK---SAHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRI  304 (341)
T ss_pred             ---------------cccCCEEEeCC-----------CC---cchhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHH
Confidence                           15689999932           11   34789999999999999999887777555332234444


Q ss_pred             HHhc
Q 038592          422 RDVF  425 (478)
Q Consensus       422 ~~vF  425 (478)
                      ++..
T Consensus       305 ~~~~  308 (341)
T COG2520         305 KSAA  308 (341)
T ss_pred             HHHH
Confidence            4444

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=95.46  E-value=0.15  Score=51.62  Aligned_cols=131  Identities=21%  Similarity=0.240  Sum_probs=84.7

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGVG--GGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      ..+|+|+|+|  ||+++++|+..- ...|+++|.+..-.+.|. .+|.....      .+....  .             
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~-~lgv~d~~------~~~~~~--~-------------   60 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAAL-ELGVIDEL------TVAGLA--E-------------   60 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHh-hcCccccc------ccchhh--h-------------
Confidence            4689999999  899999999863 567888888888888874 35543110      011101  1             


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHH
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQ  419 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~  419 (478)
                                      .....|+||+-+            |.. .+.++++.+...|++ |.+++.+.+-.    ..+++
T Consensus        61 ----------------~~~~aD~Vivav------------Pi~-~~~~~l~~l~~~l~~-g~iv~Dv~S~K----~~v~~  106 (279)
T COG0287          61 ----------------AAAEADLVIVAV------------PIE-ATEEVLKELAPHLKK-GAIVTDVGSVK----SSVVE  106 (279)
T ss_pred             ----------------hcccCCEEEEec------------cHH-HHHHHHHHhcccCCC-CCEEEeccccc----HHHHH
Confidence                            234589999933            222 578899999998988 55666776653    44566


Q ss_pred             HHHHhcCc----cEEEeecc-------cceEEEEEEcCCCC
Q 038592          420 EFRDVFQE----LYEIDVGN-------EENFVLIATGLSIV  449 (478)
Q Consensus       420 ~l~~vF~~----v~~~~v~~-------~~N~Vl~a~~~~~~  449 (478)
                      .+.+..+.    +-..|+.+       ..|.+++-++.+..
T Consensus       107 a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~  147 (279)
T COG0287         107 AMEKYLPGDVRFVGGHPMFGPEADAGLFENAVVVLTPSEGT  147 (279)
T ss_pred             HHHHhccCCCeeEecCCCCCCcccccccCCCEEEEcCCCCC
Confidence            77777754    22233322       25677777766644

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=95.43  E-value=0.13  Score=52.83  Aligned_cols=80  Identities=20%  Similarity=0.244  Sum_probs=61.6

Q ss_pred             CeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          264 PKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       264 ~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..++..=+|+|+-+.++.+.+ +.+|.++|.||..++.|++.+. ...+|++++.++-.++.+.+..             
T Consensus        22 giyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~-~~~~R~~~i~~nF~~l~~~l~~-------------   87 (305)
T TIGR00006        22 GIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLS-DFEGRVVLIHDNFANFFEHLDE-------------   87 (305)
T ss_pred             CEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHh-hcCCcEEEEeCCHHHHHHHHHh-------------
Confidence            467778888888887777765 5899999999999999998653 1246899999999988655422             


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDS  369 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s  369 (478)
                                  ....++|.|+.|+--
T Consensus        88 ------------~~~~~vDgIl~DLGv  102 (305)
T TIGR00006        88 ------------LLVTKIDGILVDLGV  102 (305)
T ss_pred             ------------cCCCcccEEEEeccC
Confidence                        123569999999843

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=95.38  E-value=0.038  Score=55.61  Aligned_cols=40  Identities=23%  Similarity=0.278  Sum_probs=35.2

Q ss_pred             CCCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHH
Q 038592          262 FRPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVAR  302 (478)
Q Consensus       262 ~~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~  302 (478)
                      .+.+|||=|+|-|-|+-.|... +..+++.|.+--|+=...
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~-G~~~~gnE~S~~Mll~s~   95 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKL-GYAVQGNEFSYFMLLASN   95 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhc-cceEEEEEchHHHHHHHH
Confidence            3689999999999999999876 889999999999976654

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=95.21  E-value=0.058  Score=56.30  Aligned_cols=127  Identities=24%  Similarity=0.305  Sum_probs=74.6

Q ss_pred             CeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCccc
Q 038592          264 PKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACS  343 (478)
Q Consensus       264 ~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~  343 (478)
                      .++|.+=+|.|.++..|... ..+|++||+++..++.|++...+..-.+++++.+++-++......      .+.+..  
T Consensus       198 ~~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~------~r~~~~--  268 (352)
T PF05958_consen  198 GDVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAK------AREFNR--  268 (352)
T ss_dssp             TEEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCC------S-GGTT--
T ss_pred             CcEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHh------hHHHHh--
Confidence            48999999999999888765 359999999999999999888765556899999998877543211      000000  


Q ss_pred             ccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHHHH
Q 038592          344 LKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEFRD  423 (478)
Q Consensus       344 ~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l~~  423 (478)
                            ..........+|+|++|            ||-.=..+.+++.+.+ ++    =++.+.|....+.+. +..|.+
T Consensus       269 ------~~~~~~~~~~~d~vilD------------PPR~G~~~~~~~~~~~-~~----~ivYvSCnP~tlaRD-l~~L~~  324 (352)
T PF05958_consen  269 ------LKGIDLKSFKFDAVILD------------PPRAGLDEKVIELIKK-LK----RIVYVSCNPATLARD-LKILKE  324 (352)
T ss_dssp             ------GGGS-GGCTTESEEEE---------------TT-SCHHHHHHHHH-SS----EEEEEES-HHHHHHH-HHHHHC
T ss_pred             ------hhhhhhhhcCCCEEEEc------------CCCCCchHHHHHHHhc-CC----eEEEEECCHHHHHHH-HHHHhh
Confidence                  00000123469999997            3333345778887764 33    245676664444333 334544

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=95.20  E-value=0.35  Score=47.21  Aligned_cols=144  Identities=18%  Similarity=0.189  Sum_probs=91.1

Q ss_pred             chhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhH--HHHHHHhhCCCEEEEEECChHHH---HHHHHhcCCCCC
Q 038592          236 VHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGA--LVSFLRTQLDFEVVGVEMDEVVL---RVARQYFGLEDG  310 (478)
Q Consensus       236 ~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~--L~~~L~~~~~~~V~~VEiDp~Vl---~vA~~~Fg~~~d  310 (478)
                      .--|.+-+..++.+.... .     ..+.+++.||.|+|.  ++..+. .++.+|+.+|-...=+   +.+.+-+++   
T Consensus        47 ~e~~~rHilDSl~~~~~~-~-----~~~~~~~DIGSGaGfPGipLAI~-~p~~~vtLles~~Kk~~FL~~~~~eL~L---  116 (215)
T COG0357          47 EELWQRHILDSLVLLPYL-D-----GKAKRVLDIGSGAGFPGIPLAIA-FPDLKVTLLESLGKKIAFLREVKKELGL---  116 (215)
T ss_pred             HHHHHHHHHHHhhhhhcc-c-----ccCCEEEEeCCCCCCchhhHHHh-ccCCcEEEEccCchHHHHHHHHHHHhCC---
Confidence            344566666665554321 0     015799999999995  444332 3577899999887644   455566665   


Q ss_pred             CCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCc-eeEEEEeCCCCCCCCCCCCCCCCCChHHHH
Q 038592          311 EFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNK-FDVIMVDLDSGDARNGTSAPPVEFVRKDVL  389 (478)
Q Consensus       311 ~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-yDvIivDv~s~d~~~g~s~Pp~~f~~~efl  389 (478)
                      ++++++++.+-+|-.                               ..+ ||+|..-+..+              -..+.
T Consensus       117 ~nv~i~~~RaE~~~~-------------------------------~~~~~D~vtsRAva~--------------L~~l~  151 (215)
T COG0357         117 ENVEIVHGRAEEFGQ-------------------------------EKKQYDVVTSRAVAS--------------LNVLL  151 (215)
T ss_pred             CCeEEehhhHhhccc-------------------------------ccccCcEEEeehccc--------------hHHHH
Confidence            569999999888832                               223 99999965432              14577


Q ss_pred             HHHHHccCcCcEEEEEeCCCCchHHHHHHHHHHHhcC---ccEEEeec
Q 038592          390 LAARLILSDFGIFVMNVIPPNRSFYDMLIQEFRDVFQ---ELYEIDVG  434 (478)
Q Consensus       390 ~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l~~vF~---~v~~~~v~  434 (478)
                      +-+...|++||.++........+.....-..+.....   .++.+.+.
T Consensus       152 e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~~~~~~p  199 (215)
T COG0357         152 ELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKVFSLTVP  199 (215)
T ss_pred             HHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEEEEeecC
Confidence            8888999999988765555444444444444444432   34444443

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=95.12  E-value=0.072  Score=54.03  Aligned_cols=117  Identities=19%  Similarity=0.216  Sum_probs=70.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhh--------CCCEEEEEECChHHHHHHHHhcCCCC--CCCeEEEEchHHHHHHHHHhhhc
Q 038592          263 RPKALCVGVGGGALVSFLRTQ--------LDFEVVGVEMDEVVLRVARQYFGLED--GEFLQVSVGDAIEFLEKLARQIV  332 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~--------~~~~V~~VEiDp~Vl~vA~~~Fg~~~--d~rl~v~v~Dg~~~l~~~~~~~~  332 (478)
                      ..+|+.-.||+|++...+.++        ...++.++|+|+..+.+|+-.+-+..  .....+..+|.+.--..      
T Consensus        47 ~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~------  120 (311)
T PF02384_consen   47 GDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKF------  120 (311)
T ss_dssp             TEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSC------
T ss_pred             cceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccc------
Confidence            457999999999976665553        35799999999999999986543322  23356888887643110      


Q ss_pred             CCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCC-C-C---------CCCCCCCCCChHHHHHHHHHccCcCcE
Q 038592          333 GKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDA-R-N---------GTSAPPVEFVRKDVLLAARLILSDFGI  401 (478)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~-~-~---------g~s~Pp~~f~~~efl~~~~~~L~~~Gi  401 (478)
                                            ....+||+|+....=+.. . .         ....++..-.+..|++.+.+.|+++|.
T Consensus       121 ----------------------~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~  178 (311)
T PF02384_consen  121 ----------------------IKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGR  178 (311)
T ss_dssp             ----------------------TST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEE
T ss_pred             ----------------------ccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccc
Confidence                                  024689999986421111 0 0         000112222345699999999999998


Q ss_pred             EEEEeC
Q 038592          402 FVMNVI  407 (478)
Q Consensus       402 lv~N~~  407 (478)
                      +++=+.
T Consensus       179 ~~~Ilp  184 (311)
T PF02384_consen  179 AAIILP  184 (311)
T ss_dssp             EEEEEE
T ss_pred             eeEEec
Confidence            776554

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=95.10  E-value=0.078  Score=54.42  Aligned_cols=121  Identities=21%  Similarity=0.313  Sum_probs=76.5

Q ss_pred             CCeEEEEeCchhH-HHHHHHhhCCCEEEEEECChHHHHHHHHhcC-CCC-C----CCeEEEEchHHHH-HHHHHhhhcCC
Q 038592          263 RPKALCVGVGGGA-LVSFLRTQLDFEVVGVEMDEVVLRVARQYFG-LED-G----EFLQVSVGDAIEF-LEKLARQIVGK  334 (478)
Q Consensus       263 ~~~VLvIGlGgG~-L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg-~~~-d----~rl~v~v~Dg~~~-l~~~~~~~~~~  334 (478)
                      ...++++|||-|+ |..|.... =..+.++||-+.-++-|++... ... .    =...++.+|...- |.+..      
T Consensus       118 ~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~------  190 (389)
T KOG1975|consen  118 GDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLL------  190 (389)
T ss_pred             ccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhc------
Confidence            3578999999555 65554322 2489999999999999985432 110 1    1367888887653 32221      


Q ss_pred             CCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCCh----HHHHHHHHHccCcCcEEEEEeCCCC
Q 038592          335 NPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVR----KDVLLAARLILSDFGIFVMNVIPPN  410 (478)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~----~efl~~~~~~L~~~Gilv~N~~~~~  410 (478)
                                         +..+.+||+|=+--          |-.-.|-+    .-+|.++.++|+|||+|+-.+... 
T Consensus       191 -------------------e~~dp~fDivScQF----------~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds-  240 (389)
T KOG1975|consen  191 -------------------EFKDPRFDIVSCQF----------AFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS-  240 (389)
T ss_pred             -------------------cCCCCCcceeeeee----------eEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH-
Confidence                               11345588886621          11223333    458999999999999999766544 


Q ss_pred             chHHHHHHHHHHHh
Q 038592          411 RSFYDMLIQEFRDV  424 (478)
Q Consensus       411 ~~~~~~v~~~l~~v  424 (478)
                          +.++.+|++.
T Consensus       241 ----d~Ii~rlr~~  250 (389)
T KOG1975|consen  241 ----DVIIKRLRAG  250 (389)
T ss_pred             ----HHHHHHHHhc
Confidence                2356667665

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=95.09  E-value=0.19  Score=50.99  Aligned_cols=125  Identities=16%  Similarity=0.192  Sum_probs=84.0

Q ss_pred             CCCCeEEEEeCchhH-HHHHHHhhCC--CEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCC
Q 038592          261 GFRPKALCVGVGGGA-LVSFLRTQLD--FEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNP  336 (478)
Q Consensus       261 g~~~~VLvIGlGgG~-L~~~L~~~~~--~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~  336 (478)
                      |.|.+||.|-+|.|- +--.+.+++.  .+|..+|.+|.-++..++...-. -.+-+++..+|+.+.- +++        
T Consensus       134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~-~l~--------  204 (311)
T PF12147_consen  134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRD-SLA--------  204 (311)
T ss_pred             CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHh-Hhh--------
Confidence            568999999999885 4455666664  69999999999999888664321 1234599999999862 211        


Q ss_pred             CCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCCh----HHHHHHHHHccCcCcEEEEEeCCCCch
Q 038592          337 DSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVR----KDVLLAARLILSDFGIFVMNVIPPNRS  412 (478)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~----~efl~~~~~~L~~~Gilv~N~~~~~~~  412 (478)
                                        .-..+++++|+-        |+.   +-|-+    ..-+.-+.++|.|||.+|.---+-++.
T Consensus       205 ------------------~l~p~P~l~iVs--------GL~---ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ  255 (311)
T PF12147_consen  205 ------------------ALDPAPTLAIVS--------GLY---ELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQ  255 (311)
T ss_pred             ------------------ccCCCCCEEEEe--------cch---hhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcc
Confidence                              135678999981        321   22222    446777889999999999755444444


Q ss_pred             HHHHHHHHHHHh
Q 038592          413 FYDMLIQEFRDV  424 (478)
Q Consensus       413 ~~~~v~~~l~~v  424 (478)
                       .+++...|..+
T Consensus       256 -le~IAr~LtsH  266 (311)
T PF12147_consen  256 -LEMIARVLTSH  266 (311)
T ss_pred             -hHHHHHHHhcc
Confidence             34455555443

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=95.06  E-value=0.18  Score=52.41  Aligned_cols=111  Identities=15%  Similarity=0.144  Sum_probs=77.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..++|.||++.|+.+..|.+. +.+|++||..+.--.       +..+++++.+.+|++.|..                 
T Consensus       212 g~~vlDLGAsPGGWT~~L~~r-G~~V~AVD~g~l~~~-------L~~~~~V~h~~~d~fr~~p-----------------  266 (357)
T PRK11760        212 GMRAVDLGAAPGGWTYQLVRR-GMFVTAVDNGPMAQS-------LMDTGQVEHLRADGFKFRP-----------------  266 (357)
T ss_pred             CCEEEEeCCCCcHHHHHHHHc-CCEEEEEechhcCHh-------hhCCCCEEEEeccCcccCC-----------------
Confidence            569999999999999888876 679999996653222       2357999999999999841                 


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcC--cEEEEEeCCCCc---hHHHHH
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDF--GIFVMNVIPPNR---SFYDML  417 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~--Gilv~N~~~~~~---~~~~~v  417 (478)
                                   ....+|++++|+-.         .|     ...++.+.+.|..|  .-+|+|+--+..   +.....
T Consensus       267 -------------~~~~vDwvVcDmve---------~P-----~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~~v~~~  319 (357)
T PRK11760        267 -------------PRKNVDWLVCDMVE---------KP-----ARVAELMAQWLVNGWCREAIFNLKLPMKKRYEEVRQC  319 (357)
T ss_pred             -------------CCCCCCEEEEeccc---------CH-----HHHHHHHHHHHhcCcccEEEEEEEcCCCCCHHHHHHH
Confidence                         25679999999642         34     34667777777654  477888844322   223334


Q ss_pred             HHHHHHhc
Q 038592          418 IQEFRDVF  425 (478)
Q Consensus       418 ~~~l~~vF  425 (478)
                      ++.+.+.+
T Consensus       320 l~~i~~~l  327 (357)
T PRK11760        320 LELIEEQL  327 (357)
T ss_pred             HHHHHHHH
Confidence            44555544

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=94.97  E-value=0.14  Score=52.29  Aligned_cols=80  Identities=18%  Similarity=0.194  Sum_probs=59.7

Q ss_pred             CeEEEEeCchhHHHHHHHhhCC--CEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          264 PKALCVGVGGGALVSFLRTQLD--FEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       264 ~~VLvIGlGgG~L~~~L~~~~~--~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      .-.+..=+|+|+-+..+.+.++  .+++++|-||..++.|++.+.- -++|++++.+.-..+-..+..            
T Consensus        25 giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~-~~~r~~~v~~~F~~l~~~l~~------------   91 (314)
T COG0275          25 GIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKE-FDGRVTLVHGNFANLAEALKE------------   91 (314)
T ss_pred             cEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhc-cCCcEEEEeCcHHHHHHHHHh------------
Confidence            4566677888888888877763  6899999999999999987632 247999999886665443321            


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDS  369 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s  369 (478)
                                   ....++|-|++|+--
T Consensus        92 -------------~~i~~vDGiL~DLGV  106 (314)
T COG0275          92 -------------LGIGKVDGILLDLGV  106 (314)
T ss_pred             -------------cCCCceeEEEEeccC
Confidence                         135689999999853

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=94.88  E-value=0.29  Score=47.41  Aligned_cols=131  Identities=19%  Similarity=0.235  Sum_probs=85.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCC--CEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHH--HHHHHHhhhcCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQLD--FEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIE--FLEKLARQIVGKNPDS  338 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~--~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~--~l~~~~~~~~~~~~~~  338 (478)
                      ..+|+.||.--|+++..+.++.+  .+|.+||++|.-.           -+.+..+.+|...  ...++...        
T Consensus        46 ~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----------~~~V~~iq~d~~~~~~~~~l~~~--------  106 (205)
T COG0293          46 GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------IPGVIFLQGDITDEDTLEKLLEA--------  106 (205)
T ss_pred             CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----------CCCceEEeeeccCccHHHHHHHH--------
Confidence            46899999999999999999864  5799999998532           2335666665543  22222111        


Q ss_pred             CCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCC----CChHHHHHHHHHccCcCcEEEEEeCCCCchHH
Q 038592          339 FGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVE----FVRKDVLLAARLILSDFGIFVMNVIPPNRSFY  414 (478)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~----f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~  414 (478)
                                      ....++|+|+.|....  +.|+..- .+    -+....++.+...|+++|.|++=+.--. . .
T Consensus       107 ----------------l~~~~~DvV~sD~ap~--~~g~~~~-Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~-~-~  165 (205)
T COG0293         107 ----------------LGGAPVDVVLSDMAPN--TSGNRSV-DHARSMYLCELALEFALEVLKPGGSFVAKVFQGE-D-F  165 (205)
T ss_pred             ----------------cCCCCcceEEecCCCC--cCCCccc-cHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCC-C-H
Confidence                            1344589999997542  2233211 11    1334556677789999999998554331 1 4


Q ss_pred             HHHHHHHHHhcCccEEEee
Q 038592          415 DMLIQEFRDVFQELYEIDV  433 (478)
Q Consensus       415 ~~v~~~l~~vF~~v~~~~v  433 (478)
                      ..++..+++.|..|.....
T Consensus       166 ~~~l~~~~~~F~~v~~~KP  184 (205)
T COG0293         166 EDLLKALRRLFRKVKIFKP  184 (205)
T ss_pred             HHHHHHHHHhhceeEEecC
Confidence            5678999999998876654

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=94.80  E-value=0.28  Score=51.04  Aligned_cols=99  Identities=23%  Similarity=0.151  Sum_probs=69.9

Q ss_pred             eEEEEeCc-hhHHHHHHHhhCC-CEEEEEECChHHHHHHHHhcCCCCCCCeEEEEc-hHHHHHHHHHhhhcCCCCCCCCc
Q 038592          265 KALCVGVG-GGALVSFLRTQLD-FEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVG-DAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       265 ~VLvIGlG-gG~L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~-Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      +|+|+|.| -|.++..+.+..+ .+|.++|+++.-++.|+++++...   +...-. |...-+.+..             
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~---~~~~~~~~~~~~~~~~t-------------  234 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADV---VVNPSEDDAGAEILELT-------------  234 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeE---eecCccccHHHHHHHHh-------------
Confidence            89999999 6888777777775 699999999999999999987531   111111 3444333321             


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                    ....+|++|-  .++              ....+..+.+.++++|.+++.-+..
T Consensus       235 --------------~g~g~D~vie--~~G--------------~~~~~~~ai~~~r~gG~v~~vGv~~  272 (350)
T COG1063         235 --------------GGRGADVVIE--AVG--------------SPPALDQALEALRPGGTVVVVGVYG  272 (350)
T ss_pred             --------------CCCCCCEEEE--CCC--------------CHHHHHHHHHHhcCCCEEEEEeccC
Confidence                          2346999987  222              2458999999999999998755443

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=94.74  E-value=0.08  Score=47.72  Aligned_cols=43  Identities=21%  Similarity=0.336  Sum_probs=38.8

Q ss_pred             CCeEEEEeCchhHHHHHHHh-----hCCCEEEEEECChHHHHHHHHhc
Q 038592          263 RPKALCVGVGGGALVSFLRT-----QLDFEVVGVEMDEVVLRVARQYF  305 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~-----~~~~~V~~VEiDp~Vl~vA~~~F  305 (478)
                      +..|+.+|+|-|.|+++|..     .++.+|.+||.++..++.|.++-
T Consensus        26 ~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~   73 (141)
T PF13679_consen   26 CITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRA   73 (141)
T ss_pred             CCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHH
Confidence            67999999999999999998     55789999999999999988764

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=94.74  E-value=0.043  Score=54.18  Aligned_cols=111  Identities=18%  Similarity=0.169  Sum_probs=69.8

Q ss_pred             CCeEEEEeCchhHHHHHHHh-hCC--CEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRT-QLD--FEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~-~~~--~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      +.++|.||+|.|.+.-=|.+ ..+  ..|.++|-+|.-+++-+++-++.+ .++...+-|.-.=             ...
T Consensus        72 ~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~Dlt~~-------------~~~  137 (264)
T KOG2361|consen   72 AETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAFVWDLTSP-------------SLK  137 (264)
T ss_pred             hhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhcccceeccch-------------hcc
Confidence            34899999999975533444 444  899999999999999998876543 3333333332110             000


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCC
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIP  408 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~  408 (478)
                                   .+.....+|+|.+ +|-      +|+.+++ --...+.+++++|+|||.+++==.+
T Consensus       138 -------------~~~~~~svD~it~-IFv------LSAi~pe-k~~~a~~nl~~llKPGG~llfrDYg  185 (264)
T KOG2361|consen  138 -------------EPPEEGSVDIITL-IFV------LSAIHPE-KMQSVIKNLRTLLKPGGSLLFRDYG  185 (264)
T ss_pred             -------------CCCCcCccceEEE-EEE------EeccChH-HHHHHHHHHHHHhCCCcEEEEeecc
Confidence                         0124566887765 111      1222222 3477899999999999999874333

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=94.66  E-value=0.15  Score=50.37  Aligned_cols=116  Identities=21%  Similarity=0.301  Sum_probs=78.6

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECCh----HHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDE----VVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNP  336 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp----~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~  336 (478)
                      ..+||=+|.+.|+..+.+....  ..-|.+||.++    +++.+|++.      +++--+++||+.--+-          
T Consensus       157 GsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR------tNiiPIiEDArhP~KY----------  220 (317)
T KOG1596|consen  157 GSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR------TNIIPIIEDARHPAKY----------  220 (317)
T ss_pred             CceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc------CCceeeeccCCCchhe----------
Confidence            4699999999999888888765  46899999886    566677665      5677788888742110          


Q ss_pred             CCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC--C----
Q 038592          337 DSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP--N----  410 (478)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~--~----  410 (478)
                                       ...-.-.|+||.|+..+|.            ..-.-.++...|+++|-|++.+-..  +    
T Consensus       221 -----------------RmlVgmVDvIFaDvaqpdq------------~RivaLNA~~FLk~gGhfvisikancidstv~  271 (317)
T KOG1596|consen  221 -----------------RMLVGMVDVIFADVAQPDQ------------ARIVALNAQYFLKNGGHFVISIKANCIDSTVF  271 (317)
T ss_pred             -----------------eeeeeeEEEEeccCCCchh------------hhhhhhhhhhhhccCCeEEEEEeccccccccc
Confidence                             0122357999998855443            2445567788899999999866433  2    


Q ss_pred             -chHHHHHHHHHHH
Q 038592          411 -RSFYDMLIQEFRD  423 (478)
Q Consensus       411 -~~~~~~v~~~l~~  423 (478)
                       ...+..-++.|++
T Consensus       272 ae~vFa~Ev~klqe  285 (317)
T KOG1596|consen  272 AEAVFAAEVKKLQE  285 (317)
T ss_pred             HHHHHHHHHHHHHH
Confidence             2334444555554

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=94.63  E-value=0.2  Score=47.24  Aligned_cols=108  Identities=17%  Similarity=0.216  Sum_probs=66.6

Q ss_pred             CCeEEEEeCchhHHHHHHHhh-CCCE---------EEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhh
Q 038592          263 RPKALCVGVGGGALVSFLRTQ-LDFE---------VVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQI  331 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~-~~~~---------V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~  331 (478)
                      ...++.-=||+|+++...... ....         +.++|+|+.+++.|++.+... ....+.+...|+.++-       
T Consensus        29 ~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~-------  101 (179)
T PF01170_consen   29 GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELP-------  101 (179)
T ss_dssp             TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGG-------
T ss_pred             CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcc-------
Confidence            357999999999988665443 2434         999999999999999876321 2356889999998873       


Q ss_pred             cCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEE
Q 038592          332 VGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIF  402 (478)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gil  402 (478)
                                             .....+|+|+.|.-=+...+ .......|+ ..|++.+++.|++..++
T Consensus       102 -----------------------~~~~~~d~IvtnPPyG~r~~-~~~~~~~ly-~~~~~~~~~~l~~~~v~  147 (179)
T PF01170_consen  102 -----------------------LPDGSVDAIVTNPPYGRRLG-SKKDLEKLY-RQFLRELKRVLKPRAVF  147 (179)
T ss_dssp             -----------------------GTTSBSCEEEEE--STTSHC-HHHHHHHHH-HHHHHHHHCHSTTCEEE
T ss_pred             -----------------------cccCCCCEEEECcchhhhcc-CHHHHHHHH-HHHHHHHHHHCCCCEEE
Confidence                                   03568999999863322110 000001222 56788888889883333

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=94.60  E-value=0.12  Score=54.44  Aligned_cols=101  Identities=20%  Similarity=0.228  Sum_probs=71.9

Q ss_pred             CCeEEEEeCchhHHH-HHHHhhCC-CEEEEEECChHHHHHHHHhcCCC--CCCCeEEEEchHHHHHHHHHhhhcCCCCCC
Q 038592          263 RPKALCVGVGGGALV-SFLRTQLD-FEVVGVEMDEVVLRVARQYFGLE--DGEFLQVSVGDAIEFLEKLARQIVGKNPDS  338 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~-~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~~--~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~  338 (478)
                      +.++|..=.|.|.=+ ++..+..+ .+|++-|+||+.++..++...+.  .++++++...||..++..            
T Consensus        50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~------------  117 (377)
T PF02005_consen   50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYS------------  117 (377)
T ss_dssp             -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCH------------
T ss_pred             CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhh------------
Confidence            457777767778744 55555344 69999999999999999886443  234899999999999853            


Q ss_pred             CCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592          339 FGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                       ...+||+|=+|.|.+        |      ..||..+-+.++.||++.+-.
T Consensus       118 -----------------~~~~fD~IDlDPfGS--------p------~pfldsA~~~v~~gGll~vTa  154 (377)
T PF02005_consen  118 -----------------RQERFDVIDLDPFGS--------P------APFLDSALQAVKDGGLLCVTA  154 (377)
T ss_dssp             -----------------STT-EEEEEE--SS----------------HHHHHHHHHHEEEEEEEEEEE
T ss_pred             -----------------ccccCCEEEeCCCCC--------c------cHhHHHHHHHhhcCCEEEEec
Confidence                             467899999987653        2      469999999999999998754

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=94.53  E-value=0.092  Score=46.58  Aligned_cols=53  Identities=11%  Similarity=0.061  Sum_probs=41.7

Q ss_pred             EEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEc
Q 038592          266 ALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVG  318 (478)
Q Consensus       266 VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~  318 (478)
                      ++.||+|.|..+.++.+.. ..+|.++|.+|.+.+.+++.+....-++++++..
T Consensus         2 vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~   55 (143)
T TIGR01444         2 VIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNA   55 (143)
T ss_pred             EEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            7899999999998888775 4699999999999999998875432234665553

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=94.43  E-value=0.19  Score=48.67  Aligned_cols=154  Identities=19%  Similarity=0.185  Sum_probs=91.0

Q ss_pred             EEEEeCchhHHHHHHHhhCC-CEEEEEECChHHHHHHHHhcCC-CCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCccc
Q 038592          266 ALCVGVGGGALVSFLRTQLD-FEVVGVEMDEVVLRVARQYFGL-EDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACS  343 (478)
Q Consensus       266 VLvIGlGgG~L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~-~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~  343 (478)
                      |+.||+-=|.||.+|.+.-. .++.++|+.+.=++.|++.... ...++++++.+||++-+..                 
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~-----------------   63 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP-----------------   63 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G-----------------
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC-----------------
Confidence            57899999999999998753 5899999999999999976532 1246899999999998742                 


Q ss_pred             ccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHHHH
Q 038592          344 LKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEFRD  423 (478)
Q Consensus       344 ~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l~~  423 (478)
                                   .+..|.|++-        ||-    .-+-.++|+.....++..--|+++=......    +-+.|.+
T Consensus        64 -------------~e~~d~ivIA--------GMG----G~lI~~ILe~~~~~~~~~~~lILqP~~~~~~----LR~~L~~  114 (205)
T PF04816_consen   64 -------------GEDVDTIVIA--------GMG----GELIIEILEAGPEKLSSAKRLILQPNTHAYE----LRRWLYE  114 (205)
T ss_dssp             -------------GG---EEEEE--------EE-----HHHHHHHHHHTGGGGTT--EEEEEESS-HHH----HHHHHHH
T ss_pred             -------------CCCCCEEEEe--------cCC----HHHHHHHHHhhHHHhccCCeEEEeCCCChHH----HHHHHHH
Confidence                         2336888882        331    1255788888888887666777654433222    2223333


Q ss_pred             h-cCccEEEeecc--cceEEEEEEcCCCCC-CcchhhhhhhHHHHH
Q 038592          424 V-FQELYEIDVGN--EENFVLIATGLSIVS-SGSDCENAFGKKLRL  465 (478)
Q Consensus       424 v-F~~v~~~~v~~--~~N~Vl~a~~~~~~~-~~~~~~~~~~~~l~~  465 (478)
                      . |.-+-+.-+.+  -.-.|+.|.+..... ..++..-.|++.|.+
T Consensus       115 ~gf~I~~E~lv~e~~~~YeIi~~~~~~~~~~~~~~~~~~~G~~l~~  160 (205)
T PF04816_consen  115 NGFEIIDEDLVEENGRFYEIIVAERGEEKPESLSEAELEFGPVLLE  160 (205)
T ss_dssp             TTEEEEEEEEEEETTEEEEEEEEEESSS------HHHHHH-HHHHH
T ss_pred             CCCEEEEeEEEeECCEEEEEEEEEeCCCCCCCCChHHHHhCHHHHh
Confidence            3 43332222322  234677777666544 345566677776654

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=94.23  E-value=0.37  Score=50.15  Aligned_cols=95  Identities=22%  Similarity=0.279  Sum_probs=63.3

Q ss_pred             CCCeEEEEeCch-hHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          262 FRPKALCVGVGG-GALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       262 ~~~~VLvIGlGg-G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ...+|+|+|.|| |.++--+.+..+.+|++++.+++-.+.|++. |.  +   .++..-.-++++..             
T Consensus       166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~l-GA--d---~~i~~~~~~~~~~~-------------  226 (339)
T COG1064         166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKL-GA--D---HVINSSDSDALEAV-------------  226 (339)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHh-CC--c---EEEEcCCchhhHHh-------------
Confidence            357999999993 4466666666679999999999999999885 32  1   22321112222221             


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCC
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIP  408 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~  408 (478)
                                      ...+|+||.-+-                 ..-+....+.|+++|.+++.=..
T Consensus       227 ----------------~~~~d~ii~tv~-----------------~~~~~~~l~~l~~~G~~v~vG~~  261 (339)
T COG1064         227 ----------------KEIADAIIDTVG-----------------PATLEPSLKALRRGGTLVLVGLP  261 (339)
T ss_pred             ----------------HhhCcEEEECCC-----------------hhhHHHHHHHHhcCCEEEEECCC
Confidence                            123999998321                 33567788899999999874433

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=94.18  E-value=0.21  Score=52.93  Aligned_cols=141  Identities=15%  Similarity=0.139  Sum_probs=102.1

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..|||.+..--|+=+.+++.++  ...|.+-|.+..-+..-+..+....-.+.-+...|+.+|-++.             
T Consensus       242 gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~-------------  308 (460)
T KOG1122|consen  242 GERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKE-------------  308 (460)
T ss_pred             CCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccc-------------
Confidence            5699999998887777888876  3699999999888877665543222346778899999874321             


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC--------------ChHHHHHHHHHccCcCcEEEEEe
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF--------------VRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f--------------~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                     ....||=|++|+..+-.  |+-.-|..+              ++.+.|..+-..+++||+||.-+
T Consensus       309 ---------------~~~~fDRVLLDAPCSGt--gvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST  371 (460)
T KOG1122|consen  309 ---------------FPGSFDRVLLDAPCSGT--GVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST  371 (460)
T ss_pred             ---------------cCcccceeeecCCCCCC--cccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence                           22389999999966531  232223222              56788899999999999999988


Q ss_pred             CCCCchHHHHHHHHHHHhcCccEEEee
Q 038592          407 IPPNRSFYDMLIQEFRDVFQELYEIDV  433 (478)
Q Consensus       407 ~~~~~~~~~~v~~~l~~vF~~v~~~~v  433 (478)
                      .+-..+--+.+++..-+-||++...+.
T Consensus       372 CSI~~~ENE~vV~yaL~K~p~~kL~p~  398 (460)
T KOG1122|consen  372 CSITVEENEAVVDYALKKRPEVKLVPT  398 (460)
T ss_pred             eecchhhhHHHHHHHHHhCCceEeccc
Confidence            776666567778888888988766554

>KOG2730 consensus Methylase [General function prediction only]

Probab=94.16  E-value=0.16  Score=49.61  Aligned_cols=61  Identities=23%  Similarity=0.359  Sum_probs=42.0

Q ss_pred             CeEEEE--eCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHH
Q 038592          264 PKALCV--GVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKL  327 (478)
Q Consensus       264 ~~VLvI--GlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~  327 (478)
                      ..|++.  |+|||+ ..|..+  ...|.++||||.-+..|+.....- -..|+++++||-++....+
T Consensus        96 ~~iidaf~g~gGnt-iqfa~~--~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~l  159 (263)
T KOG2730|consen   96 EVIVDAFCGVGGNT-IQFALQ--GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKL  159 (263)
T ss_pred             chhhhhhhcCCchH-HHHHHh--CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHH
Confidence            344443  444444 334333  468999999999999999775321 1239999999999987664

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=93.88  E-value=0.5  Score=45.73  Aligned_cols=125  Identities=21%  Similarity=0.258  Sum_probs=83.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHH----HHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLR----VARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPD  337 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~----vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~  337 (478)
                      ..+||=+|.-+|+.++.+.... ...|.+||.+|.+.+    +|++      .+++--+.+||..=- +.+.        
T Consensus        77 g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~------R~Ni~PIL~DA~~P~-~Y~~--------  141 (231)
T COG1889          77 GSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK------RPNIIPILEDARKPE-KYRH--------  141 (231)
T ss_pred             CCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh------CCCceeeecccCCcH-Hhhh--------
Confidence            4699999999999999998876 479999999997654    5554      366777888887421 1110        


Q ss_pred             CCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC-------C
Q 038592          338 SFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP-------N  410 (478)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~-------~  410 (478)
                                        --+..|+|+.|+-.++.            ..=+..++...|+++|-+++-+-.|       .
T Consensus       142 ------------------~Ve~VDviy~DVAQp~Q------------a~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp  191 (231)
T COG1889         142 ------------------LVEKVDVIYQDVAQPNQ------------AEILADNAEFFLKKGGYVVIAIKARSIDVTADP  191 (231)
T ss_pred             ------------------hcccccEEEEecCCchH------------HHHHHHHHHHhcccCCeEEEEEEeecccccCCH
Confidence                              23459999999855432            3668889999999999444333222       2


Q ss_pred             chHHHHHHHHHHHh-cCccEEEe
Q 038592          411 RSFYDMLIQEFRDV-FQELYEID  432 (478)
Q Consensus       411 ~~~~~~v~~~l~~v-F~~v~~~~  432 (478)
                      .+.++.-+..|.+- |.-+-.+.
T Consensus       192 ~~vf~~ev~kL~~~~f~i~e~~~  214 (231)
T COG1889         192 EEVFKDEVEKLEEGGFEILEVVD  214 (231)
T ss_pred             HHHHHHHHHHHHhcCceeeEEec
Confidence            34455555666655 44333333

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=93.73  E-value=0.57  Score=51.36  Aligned_cols=44  Identities=20%  Similarity=0.210  Sum_probs=37.1

Q ss_pred             CCeEEEEeCc-hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC
Q 038592          263 RPKALCVGVG-GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL  307 (478)
Q Consensus       263 ~~~VLvIGlG-gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~  307 (478)
                      +.+|+|+|+| .|..+....+.++.+|.++|.+++.++.|++ +|.
T Consensus       165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes-lGA  209 (509)
T PRK09424        165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES-MGA  209 (509)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cCC
Confidence            7899999999 4666666667778899999999999999988 563

>PRK08818 prephenate dehydrogenase; Provisional

Probab=93.71  E-value=0.24  Score=52.14  Aligned_cols=89  Identities=21%  Similarity=0.318  Sum_probs=60.2

Q ss_pred             CCeEEEEeC-c--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGV-G--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGl-G--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      .++|+|||+ |  ||++++.|.+..+.+|.++|.+               |+.    ..|..+.                
T Consensus         4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~---------------d~~----~~~~~~~----------------   48 (370)
T PRK08818          4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPA---------------DPG----SLDPATL----------------   48 (370)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCC---------------ccc----cCCHHHH----------------
Confidence            479999999 9  8999999997667799999874               100    0011111                


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHc---cCcCcEEEEEeCCCCchHHHH
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLI---LSDFGIFVMNVIPPNRSFYDM  416 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~---L~~~Gilv~N~~~~~~~~~~~  416 (478)
                                       -...|+||+-+            |.. ...++++.+...   |++ |.+++.+.+-.....+.
T Consensus        49 -----------------v~~aDlVilav------------Pv~-~~~~~l~~l~~~~~~l~~-~~iVtDVgSvK~~i~~~   97 (370)
T PRK08818         49 -----------------LQRADVLIFSA------------PIR-HTAALIEEYVALAGGRAA-GQLWLDVTSIKQAPVAA   97 (370)
T ss_pred             -----------------hcCCCEEEEeC------------CHH-HHHHHHHHHhhhhcCCCC-CeEEEECCCCcHHHHHH
Confidence                             13479999932            333 457888888876   565 77888998876555444


Q ss_pred             H
Q 038592          417 L  417 (478)
Q Consensus       417 v  417 (478)
                      +
T Consensus        98 ~   98 (370)
T PRK08818         98 M   98 (370)
T ss_pred             H
Confidence            3

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=93.52  E-value=0.8  Score=47.31  Aligned_cols=114  Identities=16%  Similarity=0.133  Sum_probs=72.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-----CCEEEEEECChHHHHHHHHhcCCCCCCCeEE--EEchHHHHHHHHHhhhcCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-----DFEVVGVEMDEVVLRVARQYFGLEDGEFLQV--SVGDAIEFLEKLARQIVGKN  335 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-----~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v--~v~Dg~~~l~~~~~~~~~~~  335 (478)
                      ...++.+|+|.|.=.+.|.+.+     ....+.|||+.+.++.|.+.+....-|.+++  +++|-.+-+.-+...     
T Consensus        77 ~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~-----  151 (319)
T TIGR03439        77 GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRP-----  151 (319)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccc-----
Confidence            3478889999998665555543     3689999999999999988876333466777  566555443321100     


Q ss_pred             CCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHH-ccCcCcEEEEEeC
Q 038592          336 PDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARL-ILSDFGIFVMNVI  407 (478)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~-~L~~~Gilv~N~~  407 (478)
                                         .......+|+.   -+...+.+ .|+   -...||+.+++ .|+|+|.|++-+-
T Consensus       152 -------------------~~~~~~r~~~f---lGSsiGNf-~~~---ea~~fL~~~~~~~l~~~d~lLiG~D  198 (319)
T TIGR03439       152 -------------------ENRSRPTTILW---LGSSIGNF-SRP---EAAAFLAGFLATALSPSDSFLIGLD  198 (319)
T ss_pred             -------------------cccCCccEEEE---eCccccCC-CHH---HHHHHHHHHHHhhCCCCCEEEEecC
Confidence                               01223455555   22223222 122   23689999999 9999999998663

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PRK11524 putative methyltransferase; Provisional

Probab=93.49  E-value=0.26  Score=49.81  Aligned_cols=70  Identities=16%  Similarity=0.163  Sum_probs=45.3

Q ss_pred             CCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC-----C-
Q 038592          311 EFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF-----V-  384 (478)
Q Consensus       311 ~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f-----~-  384 (478)
                      ..-+++.+|++++++.+                            .+.+||+|++|.-=.... .........     . 
T Consensus         7 ~~~~i~~gD~~~~l~~l----------------------------~~~siDlIitDPPY~~~~-~~~~~~~~~~~~~~~~   57 (284)
T PRK11524          7 EAKTIIHGDALTELKKI----------------------------PSESVDLIFADPPYNIGK-NFDGLIEAWKEDLFID   57 (284)
T ss_pred             CCCEEEeccHHHHHHhc----------------------------ccCcccEEEECCCccccc-ccccccccccHHHHHH
Confidence            44589999999998763                            466899999984210000 000011111     1 


Q ss_pred             -hHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          385 -RKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       385 -~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                       -.+++..++++|+++|.++++....
T Consensus        58 ~l~~~l~~~~rvLK~~G~i~i~~~~~   83 (284)
T PRK11524         58 WLYEWIDECHRVLKKQGTMYIMNSTE   83 (284)
T ss_pred             HHHHHHHHHHHHhCCCcEEEEEcCch
Confidence             1578899999999999999875443

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.43  E-value=0.21  Score=50.23  Aligned_cols=40  Identities=25%  Similarity=0.400  Sum_probs=32.2

Q ss_pred             CeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHh
Q 038592          264 PKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQY  304 (478)
Q Consensus       264 ~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~  304 (478)
                      ++|.|||+|  |+.++..|.+. +.+|+++|.|++.++.+.++
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~-G~~V~~~d~~~~~~~~~~~~   43 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVS-GFQTTLVDIKQEQLESAQQE   43 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHH
Confidence            479999999  56666666543 67999999999999988765

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=93.30  E-value=0.89  Score=49.89  Aligned_cols=44  Identities=20%  Similarity=0.195  Sum_probs=35.5

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL  307 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~  307 (478)
                      +.+|+|+|+|. |..+..+.+.++..|+++|.+++.++.+++ +|.
T Consensus       164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~-lGa  208 (511)
T TIGR00561       164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS-MGA  208 (511)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cCC
Confidence            67999999994 555555666678889999999999999987 553

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=93.30  E-value=0.32  Score=45.15  Aligned_cols=44  Identities=23%  Similarity=0.154  Sum_probs=34.1

Q ss_pred             CCeEEEEeCc-hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcC
Q 038592          263 RPKALCVGVG-GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFG  306 (478)
Q Consensus       263 ~~~VLvIGlG-gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg  306 (478)
                      |.+|+++|.| .|.-+..+...++.++++.|..++.++..+..+.
T Consensus        20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~   64 (168)
T PF01262_consen   20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGA   64 (168)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTT
T ss_pred             CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccC
Confidence            7899999999 4555556666689999999999999988777654

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=93.29  E-value=0.85  Score=37.65  Aligned_cols=102  Identities=25%  Similarity=0.254  Sum_probs=67.6

Q ss_pred             EEEEeCchhHHHHHHHhhCC--CEEEEEECChHHHHHHHHhcCCCCCCC-eEEEEchHHHH-HHHHHhhhcCCCCCCCCc
Q 038592          266 ALCVGVGGGALVSFLRTQLD--FEVVGVEMDEVVLRVARQYFGLEDGEF-LQVSVGDAIEF-LEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       266 VLvIGlGgG~L~~~L~~~~~--~~V~~VEiDp~Vl~vA~~~Fg~~~d~r-l~v~v~Dg~~~-l~~~~~~~~~~~~~~~~~  341 (478)
                      ++.+|+|.|... ++.....  ..++++|+++.+++.++..... .... +.+..+|.... +.                
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----------------  113 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLP----------------  113 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCC----------------
Confidence            999999999876 4444332  4888899999999996654332 2111 67777777652 10                


Q ss_pred             ccccCCCccCCCCCCC-CceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          342 CSLKDGNFLDNSDRVD-NKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~-~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                   ... ..||++ .-......          ......+..+.+.|+++|.+++.....
T Consensus       114 -------------~~~~~~~d~~-~~~~~~~~----------~~~~~~~~~~~~~l~~~g~~~~~~~~~  158 (257)
T COG0500         114 -------------FEDSASFDLV-ISLLVLHL----------LPPAKALRELLRVLKPGGRLVLSDLLR  158 (257)
T ss_pred             -------------CCCCCceeEE-eeeeehhc----------CCHHHHHHHHHHhcCCCcEEEEEeccC
Confidence                         122 479999 42111100          014789999999999999998876654

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=92.95  E-value=3.5  Score=39.64  Aligned_cols=144  Identities=17%  Similarity=0.249  Sum_probs=90.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEE----EEchHHHHHHHHHhhhcCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQV----SVGDAIEFLEKLARQIVGKNP  336 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v----~v~Dg~~~l~~~~~~~~~~~~  336 (478)
                      ..+||.+|..-|++.....+..  +..|.+|||-         ++.-+  +...+    .+.|-..+.+=. +.      
T Consensus        70 ~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll---------h~~p~--~Ga~~i~~~dvtdp~~~~ki~-e~------  131 (232)
T KOG4589|consen   70 EDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL---------HIEPP--EGATIIQGNDVTDPETYRKIF-EA------  131 (232)
T ss_pred             CCEEEEccCCCChHHHHHHHhhCCCceEEEEeee---------eccCC--CCcccccccccCCHHHHHHHH-Hh------
Confidence            4689999999999998877764  5799999983         23211  22233    334555543221 10      


Q ss_pred             CCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC----ChHHHHHHHHHccCcCcEEEEEeCCCCch
Q 038592          337 DSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF----VRKDVLLAARLILSDFGIFVMNVIPPNRS  412 (478)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f----~~~efl~~~~~~L~~~Gilv~N~~~~~~~  412 (478)
                                        -++.+.|+|+.|..... + |+.. -.+.    +-.+.|.-....+.|+|.|++-+|.-+.+
T Consensus       132 ------------------lp~r~VdvVlSDMapna-T-Gvr~-~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~  190 (232)
T KOG4589|consen  132 ------------------LPNRPVDVVLSDMAPNA-T-GVRI-RDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEE  190 (232)
T ss_pred             ------------------CCCCcccEEEeccCCCC-c-Ccch-hhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCch
Confidence                              15678999999975432 1 3321 1111    11224444456778999999999876443


Q ss_pred             HHHHHHHHHHHhcCccEEEee----cccceEEEEEEcCC
Q 038592          413 FYDMLIQEFRDVFQELYEIDV----GNEENFVLIATGLS  447 (478)
Q Consensus       413 ~~~~v~~~l~~vF~~v~~~~v----~~~~N~Vl~a~~~~  447 (478)
                        ..+.++|+++|..|..++.    ++..-..++|++-.
T Consensus       191 --~~l~r~l~~~f~~Vk~vKP~Asr~eS~E~y~v~~~~k  227 (232)
T KOG4589|consen  191 --ALLQRRLQAVFTNVKKVKPDASRDESAETYLVCLNFK  227 (232)
T ss_pred             --HHHHHHHHHHhhhcEeeCCccccccccceeeeeeecc
Confidence              3467899999999987764    34445667776543

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=92.82  E-value=0.67  Score=48.51  Aligned_cols=101  Identities=21%  Similarity=0.193  Sum_probs=77.6

Q ss_pred             CCeEEEEeCchhHHH-HHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALV-SFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~-~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      +.+||.-=.|+|.=+ ++..+....+|+.=||+|.-++++++...+...+...++..|+-.++.+               
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~---------------  117 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHE---------------  117 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHh---------------
Confidence            568888777888744 3333333359999999999999999998776445566666999999976               


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                    ....||+|=+|.|.+        |      ..|++++.+..+.+|++.+-.
T Consensus       118 --------------~~~~fd~IDiDPFGS--------P------aPFlDaA~~s~~~~G~l~vTA  154 (380)
T COG1867         118 --------------LHRAFDVIDIDPFGS--------P------APFLDAALRSVRRGGLLCVTA  154 (380)
T ss_pred             --------------cCCCccEEecCCCCC--------C------chHHHHHHHHhhcCCEEEEEe
Confidence                          357899999987754        2      348999999999999998754

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=92.78  E-value=2  Score=40.67  Aligned_cols=38  Identities=26%  Similarity=0.412  Sum_probs=24.9

Q ss_pred             eEEEEeCchhH--HHHHHHhhCCCEEEEEECChHHHHHHHH
Q 038592          265 KALCVGVGGGA--LVSFLRTQLDFEVVGVEMDEVVLRVARQ  303 (478)
Q Consensus       265 ~VLvIGlGgG~--L~~~L~~~~~~~V~~VEiDp~Vl~vA~~  303 (478)
                      +|.|+|+|-=+  ++..+.+ .+.+|.+||+|++.++.-.+
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~-~G~~V~g~D~~~~~v~~l~~   41 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAE-KGHQVIGVDIDEEKVEALNN   41 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHH-TTSEEEEE-S-HHHHHHHHT
T ss_pred             EEEEECCCcchHHHHHHHHh-CCCEEEEEeCChHHHHHHhh
Confidence            79999999433  4444443 37899999999999988764

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=92.66  E-value=0.13  Score=50.62  Aligned_cols=103  Identities=20%  Similarity=0.291  Sum_probs=73.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeE--EEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQ--VSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~--v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      -+.+++||+|-|.+.+.|+..---+++.+|.+-.|++-|++-    +||.+.  -.++|-- ++.               
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~----qdp~i~~~~~v~DEE-~Ld---------------  132 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA----QDPSIETSYFVGDEE-FLD---------------  132 (325)
T ss_pred             CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc----CCCceEEEEEecchh-ccc---------------
Confidence            468999999999999888765324899999999999999865    345443  3455532 321               


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                    ...+++|+||.-+.-.+..          --+..+..|+..|+|+|+|+--+..-
T Consensus       133 --------------f~ens~DLiisSlslHW~N----------dLPg~m~~ck~~lKPDg~Fiasmlgg  177 (325)
T KOG2940|consen  133 --------------FKENSVDLIISSLSLHWTN----------DLPGSMIQCKLALKPDGLFIASMLGG  177 (325)
T ss_pred             --------------ccccchhhhhhhhhhhhhc----------cCchHHHHHHHhcCCCccchhHHhcc
Confidence                          2567899999854322211          11457788999999999999766554

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.65  E-value=0.84  Score=46.33  Aligned_cols=40  Identities=23%  Similarity=0.402  Sum_probs=32.1

Q ss_pred             CeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHh
Q 038592          264 PKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQY  304 (478)
Q Consensus       264 ~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~  304 (478)
                      ++|.+||+|  |++++..|.+. +.+|+++|.+++.++.+++.
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~-g~~V~~~d~~~~~~~~~~~~   46 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARK-GLQVVLIDVMEGALERARGV   46 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhC-CCeEEEEECCHHHHHHHHHH
Confidence            589999999  66677666543 67999999999998887764

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=92.46  E-value=0.34  Score=46.97  Aligned_cols=152  Identities=19%  Similarity=0.210  Sum_probs=74.2

Q ss_pred             chhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhh---C--CCEEEEEECChHHH-HHHHHhcCCCC
Q 038592          236 VHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQ---L--DFEVVGVEMDEVVL-RVARQYFGLED  309 (478)
Q Consensus       236 ~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~---~--~~~V~~VEiDp~Vl-~vA~~~Fg~~~  309 (478)
                      ...|-+-|++-..++-..        .|..|+.+|.-.|+.+.|.+..   +  ..+|.+||||..-. ..|.+.-.+  
T Consensus        14 i~q~P~Dm~~~qeli~~~--------kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~--   83 (206)
T PF04989_consen   14 IIQYPQDMVAYQELIWEL--------KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPM--   83 (206)
T ss_dssp             ESS-HHHHHHHHHHHHHH----------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-----
T ss_pred             hhcCHHHHHHHHHHHHHh--------CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccc--
Confidence            344555666655554321        3788999999866655555432   3  37999999975433 333333222  


Q ss_pred             CCCeEEEEchHHHH--HHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHH
Q 038592          310 GEFLQVSVGDAIEF--LEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKD  387 (478)
Q Consensus       310 d~rl~v~v~Dg~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~e  387 (478)
                      .+|++++.||..+-  +.+...                        -.......+||.|....-.           -...
T Consensus        84 ~~rI~~i~Gds~d~~~~~~v~~------------------------~~~~~~~vlVilDs~H~~~-----------hvl~  128 (206)
T PF04989_consen   84 SPRITFIQGDSIDPEIVDQVRE------------------------LASPPHPVLVILDSSHTHE-----------HVLA  128 (206)
T ss_dssp             -TTEEEEES-SSSTHHHHTSGS------------------------S----SSEEEEESS----S-----------SHHH
T ss_pred             cCceEEEECCCCCHHHHHHHHH------------------------hhccCCceEEEECCCccHH-----------HHHH
Confidence            48999999998753  221000                        0123456788887653221           2345


Q ss_pred             HHHHHHHccCcCcEEEE-EeCCC--------Cch-----HHHHHHHHHHHhcCccEEEee
Q 038592          388 VLLAARLILSDFGIFVM-NVIPP--------NRS-----FYDMLIQEFRDVFQELYEIDV  433 (478)
Q Consensus       388 fl~~~~~~L~~~Gilv~-N~~~~--------~~~-----~~~~v~~~l~~vF~~v~~~~v  433 (478)
                      -|+....++++|+.+|+ .+...        ++.     -....+..+.+.++. |.++.
T Consensus       129 eL~~y~plv~~G~Y~IVeDt~~~~~~~~~~~~~~w~~g~~p~~av~~fL~~~~~-f~iD~  187 (206)
T PF04989_consen  129 ELEAYAPLVSPGSYLIVEDTIIEDWPESWFPDRPWGPGNNPKTAVKEFLAEHPD-FEIDT  187 (206)
T ss_dssp             HHHHHHHT--TT-EEEETSHHHHHHHHS-------------HHHHHHHHHTTTT-EEEET
T ss_pred             HHHHhCccCCCCCEEEEEeccccccccccccccchhhhhHHHHHHHHHHHHCCC-cEecc
Confidence            66779999999999986 22100        111     123445556666777 77764

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=92.41  E-value=0.85  Score=45.75  Aligned_cols=39  Identities=36%  Similarity=0.361  Sum_probs=32.6

Q ss_pred             eEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHh
Q 038592          265 KALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQY  304 (478)
Q Consensus       265 ~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~  304 (478)
                      +|.|||+|  ||+++..|.+. +.+|.+++.++..++.+.+.
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~-g~~V~~~d~~~~~~~~a~~~   42 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSL-GHTVYGVSRRESTCERAIER   42 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHC
Confidence            68999999  67888888765 67999999999988887653

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=92.40  E-value=1.2  Score=45.27  Aligned_cols=40  Identities=25%  Similarity=0.374  Sum_probs=31.4

Q ss_pred             CeEEEEeCc--hhHHHHHHHhhC-CCEEEEEECChHHHHHHHH
Q 038592          264 PKALCVGVG--GGALVSFLRTQL-DFEVVGVEMDEVVLRVARQ  303 (478)
Q Consensus       264 ~~VLvIGlG--gG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~  303 (478)
                      .+|+|||+|  |++++..|.+.. ..+|.+++.+++-.+.+++
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~   49 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE   49 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh
Confidence            589999999  456777776542 3589999999998888765

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=92.40  E-value=0.96  Score=51.60  Aligned_cols=79  Identities=19%  Similarity=0.181  Sum_probs=54.3

Q ss_pred             cHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhh-----------------------------------
Q 038592          239 YLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQ-----------------------------------  283 (478)
Q Consensus       239 Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~-----------------------------------  283 (478)
                      --+.+++++.....-.      .....++.-+||+|+++......                                   
T Consensus       173 l~etlAaa~l~~a~w~------~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~  246 (702)
T PRK11783        173 LKENLAAAILLRSGWP------QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQE  246 (702)
T ss_pred             CcHHHHHHHHHHcCCC------CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHH
Confidence            3456666665543210      11357888999999987554331                                   


Q ss_pred             --------CCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHH
Q 038592          284 --------LDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEF  323 (478)
Q Consensus       284 --------~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~  323 (478)
                              ...+|+++|+|+.+++.|++..... -..++++..+|..++
T Consensus       247 ~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~  295 (702)
T PRK11783        247 RARAGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADL  295 (702)
T ss_pred             HHhhcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhc
Confidence                    0137999999999999999876432 235789999999876

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=92.38  E-value=0.98  Score=44.15  Aligned_cols=161  Identities=20%  Similarity=0.208  Sum_probs=76.2

Q ss_pred             CCCeEEEEeCchhHHHHHHHhhC--C-CEEEEEECChHHHHHHHHhcCCCCCCCe---------------EEEEchHHHH
Q 038592          262 FRPKALCVGVGGGALVSFLRTQL--D-FEVVGVEMDEVVLRVARQYFGLEDGEFL---------------QVSVGDAIEF  323 (478)
Q Consensus       262 ~~~~VLvIGlGgG~L~~~L~~~~--~-~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl---------------~v~v~Dg~~~  323 (478)
                      .|..+-.=.||+|.|...|.-+.  . ..|.+-|||+.++++|++.+++...+.+               +..+.|+.+-
T Consensus        51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s  130 (246)
T PF11599_consen   51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES  130 (246)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred             CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence            36788888999998776554433  2 5999999999999999999876421000               1111222221


Q ss_pred             HHHHHhhhcCCCCCCCCccccc--CCCccCCC----CCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccC
Q 038592          324 LEKLARQIVGKNPDSFGACSLK--DGNFLDNS----DRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILS  397 (478)
Q Consensus       324 l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~  397 (478)
                      ...+...-...    .+..+.+  .-|.....    -......|+||.|+.-++.+. +..+-..=-...+|..++..|.
T Consensus       131 A~RL~~~l~~~----g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~-W~g~~~~~p~~~ml~~l~~vLp  205 (246)
T PF11599_consen  131 ADRLRERLAAE----GGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTS-WQGEGSGGPVAQMLNSLAPVLP  205 (246)
T ss_dssp             HHHHHHHHHHT----TSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSS-TTS---HHHHHHHHHHHHCCS-
T ss_pred             HHHHHHHHHhc----CCCCchhheeecccCCchhhhhccCCCCCEEEecCCCccccc-ccCCCCCCcHHHHHHHHHhhCC
Confidence            11111100000    0000000  00000000    012344699999997766442 2221111124789999999997


Q ss_pred             cCcEEEEEeCCCCchHHHHHHHHHHHhcCccEEEeeccc
Q 038592          398 DFGIFVMNVIPPNRSFYDMLIQEFRDVFQELYEIDVGNE  436 (478)
Q Consensus       398 ~~Gilv~N~~~~~~~~~~~v~~~l~~vF~~v~~~~v~~~  436 (478)
                      +++++++  ..+.....       ..-|..+-.++++.-
T Consensus       206 ~~sVV~v--~~k~~Ki~-------~~~~r~~~rlKvGkR  235 (246)
T PF11599_consen  206 ERSVVAV--SDKGRKIP-------HDRFRRLERLKVGKR  235 (246)
T ss_dssp             TT-EEEE--EESSSS----------TTS--SEEEEETTE
T ss_pred             CCcEEEE--ecCCcccc-------cchhHHHHHHhccce
Confidence            7888877  33333321       256777777777653

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=92.32  E-value=2.5  Score=38.85  Aligned_cols=126  Identities=17%  Similarity=0.196  Sum_probs=75.0

Q ss_pred             CeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          264 PKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       264 ~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      .+|-+||+|  |..++.-|.+. +.+|.+.|.+++-.+...+. +       -....+..+.+++               
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~-g~~v~~~d~~~~~~~~~~~~-g-------~~~~~s~~e~~~~---------------   57 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKA-GYEVTVYDRSPEKAEALAEA-G-------AEVADSPAEAAEQ---------------   57 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHT-TTEEEEEESSHHHHHHHHHT-T-------EEEESSHHHHHHH---------------
T ss_pred             CEEEEEchHHHHHHHHHHHHhc-CCeEEeeccchhhhhhhHHh-h-------hhhhhhhhhHhhc---------------
Confidence            489999999  33455555433 68999999999888776654 2       2344566666543               


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHH--HHHccCcCcEEEEEeCCCCchHHHHHHH
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLA--ARLILSDFGIFVMNVIPPNRSFYDMLIQ  419 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~--~~~~L~~~Gilv~N~~~~~~~~~~~v~~  419 (478)
                                        -|+|++-+.+.+            ...+.+..  +...|++ |.+++++.+.+++..+.+.+
T Consensus        58 ------------------~dvvi~~v~~~~------------~v~~v~~~~~i~~~l~~-g~iiid~sT~~p~~~~~~~~  106 (163)
T PF03446_consen   58 ------------------ADVVILCVPDDD------------AVEAVLFGENILAGLRP-GKIIIDMSTISPETSRELAE  106 (163)
T ss_dssp             ------------------BSEEEE-SSSHH------------HHHHHHHCTTHGGGS-T-TEEEEE-SS--HHHHHHHHH
T ss_pred             ------------------ccceEeecccch------------hhhhhhhhhHHhhcccc-ceEEEecCCcchhhhhhhhh
Confidence                              499998543211            23555555  6666765 66667888888887777777


Q ss_pred             HHHHhcCccEEEeec------ccceEEEEEE
Q 038592          420 EFRDVFQELYEIDVG------NEENFVLIAT  444 (478)
Q Consensus       420 ~l~~vF~~v~~~~v~------~~~N~Vl~a~  444 (478)
                      .+.+.--+....++.      +.....++++
T Consensus       107 ~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~g  137 (163)
T PF03446_consen  107 RLAAKGVRYVDAPVSGGPPGAEEGTLTIMVG  137 (163)
T ss_dssp             HHHHTTEEEEEEEEESHHHHHHHTTEEEEEE
T ss_pred             hhhhccceeeeeeeecccccccccceEEEcc
Confidence            777654444445542      2345556665

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=92.24  E-value=0.63  Score=47.88  Aligned_cols=80  Identities=20%  Similarity=0.188  Sum_probs=53.4

Q ss_pred             CeEEEEeCchhHHHHHHHhh-CCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          264 PKALCVGVGGGALVSFLRTQ-LDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       264 ~~VLvIGlGgG~L~~~L~~~-~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ...+..=+|+|+-+..+.+. .+.+|.++|.||++++.|++.+.- .++|+.++.++-.++-+.+...            
T Consensus        22 g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~-~~~r~~~~~~~F~~l~~~l~~~------------   88 (310)
T PF01795_consen   22 GIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKK-FDDRFIFIHGNFSNLDEYLKEL------------   88 (310)
T ss_dssp             -EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCC-CCTTEEEEES-GGGHHHHHHHT------------
T ss_pred             ceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhh-ccceEEEEeccHHHHHHHHHHc------------
Confidence            45666667777777666665 469999999999999999887652 2689999998877665443221            


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLD  368 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~  368 (478)
                                  ..-.++|-|++|+-
T Consensus        89 ------------~~~~~~dgiL~DLG  102 (310)
T PF01795_consen   89 ------------NGINKVDGILFDLG  102 (310)
T ss_dssp             ------------TTTS-EEEEEEE-S
T ss_pred             ------------cCCCccCEEEEccc
Confidence                        02457999999984

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.20  E-value=1.1  Score=44.87  Aligned_cols=114  Identities=12%  Similarity=0.128  Sum_probs=65.7

Q ss_pred             CeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC-----CCCCCeEEEEchHHHHHHHHHhhhcCCCC
Q 038592          264 PKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL-----EDGEFLQVSVGDAIEFLEKLARQIVGKNP  336 (478)
Q Consensus       264 ~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~-----~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~  336 (478)
                      .+|.|||+|  |+.++..+... +.+|+++|++++.++.+++...-     .+...+  -..+....+..+         
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~-g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~--~~~~~~~~~~~l---------   71 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVA-GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKM--TEADKEAALARI---------   71 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC--CHHHHHHHHhCe---------
Confidence            479999999  77787777655 67999999999999766543210     000000  000111111000         


Q ss_pred             CCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCch
Q 038592          337 DSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRS  412 (478)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~  412 (478)
                      +.+.       +     ...-...|+||.-+           |+..-...+++..+.+.++++-+++.|+.+....
T Consensus        72 ~~~~-------~-----~~~~~~aDlVi~av-----------~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~  124 (282)
T PRK05808         72 TGTT-------D-----LDDLKDADLVIEAA-----------TENMDLKKKIFAQLDEIAKPEAILATNTSSLSIT  124 (282)
T ss_pred             EEeC-------C-----HHHhccCCeeeecc-----------cccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH
Confidence            0000       0     00113368888832           2222244789999999999999988888776443

>TIGR00518 alaDH alanine dehydrogenase

Probab=92.16  E-value=1.7  Score=45.79  Aligned_cols=44  Identities=20%  Similarity=0.212  Sum_probs=32.9

Q ss_pred             CCeEEEEeCc-hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcC
Q 038592          263 RPKALCVGVG-GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFG  306 (478)
Q Consensus       263 ~~~VLvIGlG-gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg  306 (478)
                      +.+|+|+|.| .|..+......++.+|+++|.+++-++.+...++
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g  211 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFG  211 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcC
Confidence            6789999998 3444444445567899999999988877766655

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.16  E-value=1.2  Score=44.84  Aligned_cols=40  Identities=18%  Similarity=0.299  Sum_probs=31.2

Q ss_pred             CeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHh
Q 038592          264 PKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQY  304 (478)
Q Consensus       264 ~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~  304 (478)
                      .+|.|||+|  |++++..+... +.+|+.+|.+++.++.+++.
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~-G~~V~l~d~~~~~l~~~~~~   45 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFH-GFDVTIYDISDEALEKAKER   45 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHH
Confidence            589999999  45566655543 67999999999988887654

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=92.04  E-value=0.49  Score=45.81  Aligned_cols=108  Identities=17%  Similarity=0.201  Sum_probs=67.2

Q ss_pred             eEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHh---cCCCC-CCCeEEEEchH-HHHHHHHHhhhcCCCCCC
Q 038592          265 KALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQY---FGLED-GEFLQVSVGDA-IEFLEKLARQIVGKNPDS  338 (478)
Q Consensus       265 ~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~---Fg~~~-d~rl~v~v~Dg-~~~l~~~~~~~~~~~~~~  338 (478)
                      +||.||.|+|--+.++..++ .....--|+|+....--+.|   .++++ -+-+.+=+.+. -.+..             
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~-------------   94 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWEL-------------   94 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCcccc-------------
Confidence            69999999999888888876 68999999999986433333   34331 12223222222 11100             


Q ss_pred             CCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592          339 FGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                   ........||+|++  -+--   .++  |.. ....+++.+.++|++||+|++.=
T Consensus        95 -------------~~~~~~~~~D~i~~--~N~l---HI~--p~~-~~~~lf~~a~~~L~~gG~L~~YG  141 (204)
T PF06080_consen   95 -------------PAPLSPESFDAIFC--INML---HIS--PWS-AVEGLFAGAARLLKPGGLLFLYG  141 (204)
T ss_pred             -------------ccccCCCCcceeee--hhHH---Hhc--CHH-HHHHHHHHHHHhCCCCCEEEEeC
Confidence                         00013567999997  1111   111  222 45889999999999999999754

The function of this family is unknown.

>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted

Probab=91.88  E-value=1.8  Score=43.18  Aligned_cols=105  Identities=16%  Similarity=0.219  Sum_probs=65.3

Q ss_pred             CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEE
Q 038592          285 DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIM  364 (478)
Q Consensus       285 ~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi  364 (478)
                      +-+....|+.|+-.+.-++.|.  .+.+++||..||.+-+....-                          +..+=-+|+
T Consensus        79 qDrl~l~ELHp~d~~~L~~~~~--~~~~v~v~~~DG~~~l~allP--------------------------P~~rRglVL  130 (245)
T PF04378_consen   79 QDRLVLFELHPQDFEALKKNFR--RDRRVRVHHRDGYEGLKALLP--------------------------PPERRGLVL  130 (245)
T ss_dssp             TSEEEEE--SHHHHHHHTTS----TTS-EEEE-S-HHHHHHHH-S---------------------------TTS-EEEE
T ss_pred             cceEEEEecCchHHHHHHHHhc--cCCccEEEeCchhhhhhhhCC--------------------------CCCCCeEEE
Confidence            4699999999999998888876  468999999999999887542                          455667899


Q ss_pred             EeCCCCCCCCCCCCCCCCCCh--HHHHHHHHHccC--cCcEEEEEeCCCCchHHHHHHHHHHHh-cCccE
Q 038592          365 VDLDSGDARNGTSAPPVEFVR--KDVLLAARLILS--DFGIFVMNVIPPNRSFYDMLIQEFRDV-FQELY  429 (478)
Q Consensus       365 vDv~s~d~~~g~s~Pp~~f~~--~efl~~~~~~L~--~~Gilv~N~~~~~~~~~~~v~~~l~~v-F~~v~  429 (478)
                      +|-            |-+.-+  ......+.+.++  +.|+++++..--+....+.+.+.|++. .+.+.
T Consensus       131 IDP------------pYE~~~dy~~v~~~l~~a~kR~~~G~~~iWYPi~~~~~~~~~~~~l~~~~~~~~l  188 (245)
T PF04378_consen  131 IDP------------PYEQKDDYQRVVDALAKALKRWPTGVYAIWYPIKDRERVDRFLRALKALGIKKVL  188 (245)
T ss_dssp             E-----------------STTHHHHHHHHHHHHHHH-TTSEEEEEEEESSHHHHHHHHHHHHHH-SSE-E
T ss_pred             ECC------------CCCCchHHHHHHHHHHHHHHhcCCcEEEEEeecccHHHHHHHHHHHHhcCCCCeE
Confidence            973            322111  334455555554  589999887666666677788888866 44443

; PDB: 2OO3_A.

>PRK13699 putative methylase; Provisional

Probab=91.67  E-value=0.63  Score=45.65  Aligned_cols=67  Identities=16%  Similarity=0.146  Sum_probs=42.7

Q ss_pred             eEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCC---CCCCCCCCCCCC--ChHH
Q 038592          313 LQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGD---ARNGTSAPPVEF--VRKD  387 (478)
Q Consensus       313 l~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d---~~~g~s~Pp~~f--~~~e  387 (478)
                      .+++.+|+++.++++                            +++..|+||.|--=..   ...+-.--...+  ...+
T Consensus         2 ~~l~~gD~le~l~~l----------------------------pd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~   53 (227)
T PRK13699          2 SRFILGNCIDVMARF----------------------------PDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQP   53 (227)
T ss_pred             CeEEechHHHHHHhC----------------------------CccccceEEeCCCcccccccCCCcccccccHHHHHHH
Confidence            378999999999874                            6788999999841100   000000000110  1246


Q ss_pred             HHHHHHHccCcCcEEEEEeC
Q 038592          388 VLLAARLILSDFGIFVMNVI  407 (478)
Q Consensus       388 fl~~~~~~L~~~Gilv~N~~  407 (478)
                      ++..+++.|+|||.+++...
T Consensus        54 ~l~E~~RVLKpgg~l~if~~   73 (227)
T PRK13699         54 ACNEMYRVLKKDALMVSFYG   73 (227)
T ss_pred             HHHHHHHHcCCCCEEEEEec
Confidence            78999999999999987544

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=91.63  E-value=0.77  Score=44.89  Aligned_cols=162  Identities=17%  Similarity=0.148  Sum_probs=104.0

Q ss_pred             CeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          264 PKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       264 ~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      .++..||+=-+.||.+|.+.- ...++++|+.+--++.|.++|.-. ..+++++..+||+.-++                
T Consensus        18 ~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~----------------   81 (226)
T COG2384          18 ARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLE----------------   81 (226)
T ss_pred             CceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccC----------------
Confidence            359999999999999988764 569999999999999999999654 35899999999987663                


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHH
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEF  421 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l  421 (478)
                                    .+...|+|++-        ||-    ..+=.++|+.-++.|+.-=-++++=... ....+   +.|
T Consensus        82 --------------~~d~~d~ivIA--------GMG----G~lI~~ILee~~~~l~~~~rlILQPn~~-~~~LR---~~L  131 (226)
T COG2384          82 --------------LEDEIDVIVIA--------GMG----GTLIREILEEGKEKLKGVERLILQPNIH-TYELR---EWL  131 (226)
T ss_pred             --------------ccCCcCEEEEe--------CCc----HHHHHHHHHHhhhhhcCcceEEECCCCC-HHHHH---HHH
Confidence                          35579999992        332    1245789999999998433444322222 11111   111


Q ss_pred             HH-hcCccEEEeec--ccceEEEEEEcCCCCCCc-chhhhhhhHHHHHHhcccc
Q 038592          422 RD-VFQELYEIDVG--NEENFVLIATGLSIVSSG-SDCENAFGKKLRLLISGEY  471 (478)
Q Consensus       422 ~~-vF~~v~~~~v~--~~~N~Vl~a~~~~~~~~~-~~~~~~~~~~l~~~i~~~~  471 (478)
                      .. -|.-..+.=+.  +..-.|++|.+++-.... ++..=.|++.|.++-+..|
T Consensus       132 ~~~~~~I~~E~ileE~~kiYEIlv~e~~~~~~~~~~~~~~~~Gp~L~k~k~~~~  185 (226)
T COG2384         132 SANSYEIKAETILEEDGKIYEILVVEKSSKPALYATEEDLLFGPKLLKEKSALF  185 (226)
T ss_pred             HhCCceeeeeeeecccCeEEEEEEEecCCchhhhhcchhhhcCHHHHhcchHHH
Confidence            11 13211111122  234577888776533222 3555667777776544433

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=91.50  E-value=1.2  Score=44.77  Aligned_cols=45  Identities=20%  Similarity=0.183  Sum_probs=37.0

Q ss_pred             CCCeEEEEeCchhHHHHHHHhhCC--CEEEEEECChHHHHHHHHhcC
Q 038592          262 FRPKALCVGVGGGALVSFLRTQLD--FEVVGVEMDEVVLRVARQYFG  306 (478)
Q Consensus       262 ~~~~VLvIGlGgG~L~~~L~~~~~--~~V~~VEiDp~Vl~vA~~~Fg  306 (478)
                      .|.+||.+|.|.|+..-.+...++  .++++||.++.++++|+.-+.
T Consensus        33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~   79 (274)
T PF09243_consen   33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLR   79 (274)
T ss_pred             CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHh
Confidence            378999999999986666666553  599999999999999987654

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=91.23  E-value=1.1  Score=48.55  Aligned_cols=102  Identities=18%  Similarity=0.188  Sum_probs=73.0

Q ss_pred             CeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCccc
Q 038592          264 PKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACS  343 (478)
Q Consensus       264 ~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~  343 (478)
                      -++|++|+|.--+...+.+-.--.|+.+|+++.+++.+..--+ .+.+-+++...|.....                   
T Consensus        50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~-~~~~~~~~~~~d~~~l~-------------------  109 (482)
T KOG2352|consen   50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNA-KERPEMQMVEMDMDQLV-------------------  109 (482)
T ss_pred             ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccc-cCCcceEEEEecchhcc-------------------
Confidence            3899999998877665555434699999999999998876544 55677888888887652                   


Q ss_pred             ccCCCccCCCCCCCCceeEEEE----eCCCCCCCCCCCCCCCCC----ChHHHHHHHHHccCcCcEEEE
Q 038592          344 LKDGNFLDNSDRVDNKFDVIMV----DLDSGDARNGTSAPPVEF----VRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       344 ~~~~~~~~~~~~~~~~yDvIiv----Dv~s~d~~~g~s~Pp~~f----~~~efl~~~~~~L~~~Gilv~  404 (478)
                                 .+++.||++|.    |..-.+        -...    .-...+..+.+.|+++|.++.
T Consensus       110 -----------fedESFdiVIdkGtlDal~~d--------e~a~~~~~~v~~~~~eVsrvl~~~gk~~s  159 (482)
T KOG2352|consen  110 -----------FEDESFDIVIDKGTLDALFED--------EDALLNTAHVSNMLDEVSRVLAPGGKYIS  159 (482)
T ss_pred             -----------CCCcceeEEEecCccccccCC--------chhhhhhHHhhHHHhhHHHHhccCCEEEE
Confidence                       25677888875    222222        1111    345678899999999998764

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=91.11  E-value=1.9  Score=41.74  Aligned_cols=58  Identities=21%  Similarity=0.252  Sum_probs=37.7

Q ss_pred             CeEEEEeCchhHHHHHHHhhCCC-EEEEEECChHHHHHHHH----------hcCCCCCCCeEEEEchHHH
Q 038592          264 PKALCVGVGGGALVSFLRTQLDF-EVVGVEMDEVVLRVARQ----------YFGLEDGEFLQVSVGDAIE  322 (478)
Q Consensus       264 ~~VLvIGlGgG~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~----------~Fg~~~d~rl~v~v~Dg~~  322 (478)
                      ...+.||.|.|-......-..++ +..+||+.|...+.|+.          ++|.. ..+++++.+|.++
T Consensus        44 dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~-~~~v~l~~gdfl~  112 (205)
T PF08123_consen   44 DVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKR-PGKVELIHGDFLD  112 (205)
T ss_dssp             -EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB----EEEEECS-TTT
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcc-cccceeeccCccc
Confidence            46788999999877665555565 59999999999998864          33432 3578888888764

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=90.96  E-value=0.94  Score=45.65  Aligned_cols=39  Identities=23%  Similarity=0.388  Sum_probs=31.3

Q ss_pred             CeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHH
Q 038592          264 PKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQ  303 (478)
Q Consensus       264 ~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~  303 (478)
                      ++|.|||+|  |+.++..+... +.+|+++|.+++.++.+++
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~-G~~V~l~d~~~~~l~~~~~   44 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFART-GYDVTIVDVSEEILKNAME   44 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHHHH
Confidence            589999999  56677666554 6799999999999987654

>PTZ00357 methyltransferase; Provisional

Probab=90.94  E-value=0.62  Score=52.31  Aligned_cols=111  Identities=19%  Similarity=0.175  Sum_probs=68.3

Q ss_pred             CeEEEEeCchhHHHHHHHhhC-----CCEEEEEECChHHHHHH-HHhcCC--------CCCCCeEEEEchHHHHHHHHHh
Q 038592          264 PKALCVGVGGGALVSFLRTQL-----DFEVVGVEMDEVVLRVA-RQYFGL--------EDGEFLQVSVGDAIEFLEKLAR  329 (478)
Q Consensus       264 ~~VLvIGlGgG~L~~~L~~~~-----~~~V~~VEiDp~Vl~vA-~~~Fg~--------~~d~rl~v~v~Dg~~~l~~~~~  329 (478)
                      ..|+|+|.|=|-|.....+..     .++|.+||-+|.-+... .++-..        ..+++++|+.+|.+.|-..  .
T Consensus       702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~p--e  779 (1072)
T PTZ00357        702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATA--A  779 (1072)
T ss_pred             EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccc--c
Confidence            468999999887765554432     36999999995522222 221111        1256899999999999311  0


Q ss_pred             hhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCc----CcE
Q 038592          330 QIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSD----FGI  401 (478)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~----~Gi  401 (478)
                           +..+..            .+..-.++|+|+.-+-.+..-+        =+++|.|.-+.+.|++    +|+
T Consensus       780 -----~~~s~~------------~P~~~gKaDIVVSELLGSFGDN--------ELSPECLDGaQrfLKdiqhsdGI  830 (1072)
T PTZ00357        780 -----ENGSLT------------LPADFGLCDLIVSELLGSLGDN--------ELSPECLEAFHAQLEDIQLSRGI  830 (1072)
T ss_pred             -----cccccc------------ccccccccceehHhhhcccccc--------cCCHHHHHHHHHhhhhhcccccc
Confidence                 000000            0012247999998775544321        2568899999988876    776

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=90.89  E-value=1.7  Score=44.41  Aligned_cols=44  Identities=27%  Similarity=0.416  Sum_probs=33.5

Q ss_pred             CCeEEEEeCc-hhHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCC
Q 038592          263 RPKALCVGVG-GGALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGL  307 (478)
Q Consensus       263 ~~~VLvIGlG-gG~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~  307 (478)
                      ..+|||+|+| .|.++..+.+..+. +|.+++.+++-++.|++ +|.
T Consensus       170 g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~-lGa  215 (343)
T PRK09880        170 GKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE-MGA  215 (343)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH-cCC
Confidence            4689999876 24455556666676 79999999999999988 563

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=90.83  E-value=5.5  Score=38.93  Aligned_cols=150  Identities=21%  Similarity=0.237  Sum_probs=85.3

Q ss_pred             chhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchh----HHHHHHHhh-CCCEEEEEECChHHHHHHHHhcCC-CC
Q 038592          236 VHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGG----ALVSFLRTQ-LDFEVVGVEMDEVVLRVARQYFGL-ED  309 (478)
Q Consensus       236 ~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG----~L~~~L~~~-~~~~V~~VEiDp~Vl~vA~~~Fg~-~~  309 (478)
                      ..+++.+|.+|.              +.+-++++..++|    +++.....+ -+.++..|--|++-+..+++.++- ..
T Consensus        29 ~aEfISAlAAG~--------------nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~   94 (218)
T PF07279_consen   29 VAEFISALAAGW--------------NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL   94 (218)
T ss_pred             HHHHHHHHhccc--------------cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc
Confidence            556666666652              1356777766654    233333333 478999999999988888887752 22


Q ss_pred             CCCeEEEEchHH-HHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHH
Q 038592          310 GEFLQVSVGDAI-EFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDV  388 (478)
Q Consensus       310 d~rl~v~v~Dg~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~ef  388 (478)
                      .+.++++++|.- +.+..                              =...|.+++|....+           + ..++
T Consensus        95 ~~~vEfvvg~~~e~~~~~------------------------------~~~iDF~vVDc~~~d-----------~-~~~v  132 (218)
T PF07279_consen   95 SDVVEFVVGEAPEEVMPG------------------------------LKGIDFVVVDCKRED-----------F-AARV  132 (218)
T ss_pred             cccceEEecCCHHHHHhh------------------------------ccCCCEEEEeCCchh-----------H-HHHH
Confidence            345689999865 45543                              235899999864322           1 1356


Q ss_pred             HHHHHHccCcCcEEEE--EeCCCCch--HHHHHHHHHHHhcCccEEEeecccceEEEEEEc
Q 038592          389 LLAARLILSDFGIFVM--NVIPPNRS--FYDMLIQEFRDVFQELYEIDVGNEENFVLIATG  445 (478)
Q Consensus       389 l~~~~~~L~~~Gilv~--N~~~~~~~--~~~~v~~~l~~vF~~v~~~~v~~~~N~Vl~a~~  445 (478)
                      |+.++  +++.|.+++  |...+...  -+..++ +-+.+.. ...+|++++.-.--+++.
T Consensus       133 l~~~~--~~~~GaVVV~~Na~~r~~~~~~w~~~~-~~~r~Vr-sv~LPIG~GleVt~ig~~  189 (218)
T PF07279_consen  133 LRAAK--LSPRGAVVVCYNAFSRSTNGFSWRSVL-RGRRVVR-SVFLPIGKGLEVTRIGAS  189 (218)
T ss_pred             HHHhc--cCCCceEEEEeccccCCcCCccHHHhc-CCCCcee-EEEeccCCCeEEEEEeec
Confidence            66544  666676554  87775321  122222 1112222 234777765444444443

The function of this family is unknown.

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=90.82  E-value=3.9  Score=43.69  Aligned_cols=130  Identities=8%  Similarity=0.076  Sum_probs=67.2

Q ss_pred             CeEEEEeCchhH--HHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          264 PKALCVGVGGGA--LVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       264 ~~VLvIGlGgG~--L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      .+|.|||+|--+  ++..|.+. +.+|+++|+|++.++.-+.  |.     +.+...+--+.+++....+   +.+.+  
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~-G~~V~~~D~~~~~v~~l~~--g~-----~~~~e~~l~~~l~~~~~~g---~l~~~--   70 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASR-QKQVIGVDINQHAVDTINR--GE-----IHIVEPDLDMVVKTAVEGG---YLRAT--   70 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhC-CCEEEEEeCCHHHHHHHHC--CC-----CCcCCCCHHHHHHHHhhcC---ceeee--
Confidence            589999999444  44444443 6899999999999886332  21     2222223333444321110   00000  


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHH
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEF  421 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l  421 (478)
                                   .....-|+||+-+..+....+   .|.--.-.+.++.+...|++|- ++++..+-.....+.+...+
T Consensus        71 -------------~~~~~aDvvii~vptp~~~~~---~~dl~~v~~~~~~i~~~l~~g~-iVI~~STv~pgtt~~~~~~l  133 (415)
T PRK11064         71 -------------TTPEPADAFLIAVPTPFKGDH---EPDLTYVEAAAKSIAPVLKKGD-LVILESTSPVGATEQMAEWL  133 (415)
T ss_pred             -------------cccccCCEEEEEcCCCCCCCC---CcChHHHHHHHHHHHHhCCCCC-EEEEeCCCCCCHHHHHHHHH
Confidence                         011257999997654321111   1111133556677888887754 45555443334344444444


Q ss_pred             HH
Q 038592          422 RD  423 (478)
Q Consensus       422 ~~  423 (478)
                      .+
T Consensus       134 ~~  135 (415)
T PRK11064        134 AE  135 (415)
T ss_pred             HH
Confidence            43

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=90.76  E-value=2.2  Score=43.93  Aligned_cols=96  Identities=24%  Similarity=0.303  Sum_probs=59.7

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+|||.|.|+ |.++..+.+..+. +|.+++.++.-.+.|++ +|.  +.-+.....|..+.+.+..            
T Consensus       177 g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~-~Ga--~~~i~~~~~~~~~~i~~~~------------  241 (358)
T TIGR03451       177 GDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE-FGA--THTVNSSGTDPVEAIRALT------------  241 (358)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-cCC--ceEEcCCCcCHHHHHHHHh------------
Confidence            46899998653 4444555555676 59999999999999976 464  2112222234445454421            


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                     ....+|+|+ |.- +              ..+.++.+.+.|+++|.+++
T Consensus       242 ---------------~~~g~d~vi-d~~-g--------------~~~~~~~~~~~~~~~G~iv~  274 (358)
T TIGR03451       242 ---------------GGFGADVVI-DAV-G--------------RPETYKQAFYARDLAGTVVL  274 (358)
T ss_pred             ---------------CCCCCCEEE-ECC-C--------------CHHHHHHHHHHhccCCEEEE
Confidence                           233588776 421 1              12456667788999999875

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=90.28  E-value=0.11  Score=51.37  Aligned_cols=75  Identities=31%  Similarity=0.447  Sum_probs=44.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcC---CCCC------CCeEEEEchHHHHHHHHHhhhcC
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFG---LEDG------EFLQVSVGDAIEFLEKLARQIVG  333 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg---~~~d------~rl~v~v~Dg~~~l~~~~~~~~~  333 (478)
                      ..+||..=+|-|.-+..+. .++.+|+++|-+|.+..+-++-+.   -..+      .|++++.+|+.+|++.       
T Consensus        76 ~~~VLDaTaGLG~Da~vlA-~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~-------  147 (234)
T PF04445_consen   76 RPSVLDATAGLGRDAFVLA-SLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQ-------  147 (234)
T ss_dssp             ---EEETT-TTSHHHHHHH-HHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCC-------
T ss_pred             CCEEEECCCcchHHHHHHH-ccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhh-------
Confidence            4689997666666554444 357899999999999887653221   1112      4899999999999852       


Q ss_pred             CCCCCCCcccccCCCccCCCCCCCCceeEEEEeC
Q 038592          334 KNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDL  367 (478)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv  367 (478)
                                            +...||+|.+|-
T Consensus       148 ----------------------~~~s~DVVY~DP  159 (234)
T PF04445_consen  148 ----------------------PDNSFDVVYFDP  159 (234)
T ss_dssp             ----------------------HSS--SEEEE--
T ss_pred             ----------------------cCCCCCEEEECC
Confidence                                  467899999974

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>PLN02494 adenosylhomocysteinase

Probab=90.15  E-value=6  Score=43.09  Aligned_cols=40  Identities=20%  Similarity=0.249  Sum_probs=28.5

Q ss_pred             CCeEEEEeCch-h-HHHHHHHhhCCCEEEEEECChHHHHHHHH
Q 038592          263 RPKALCVGVGG-G-ALVSFLRTQLDFEVVGVEMDEVVLRVARQ  303 (478)
Q Consensus       263 ~~~VLvIGlGg-G-~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~  303 (478)
                      .++|+|+|.|. | .+++.++ .++.+|.++|.||.-...|..
T Consensus       254 GKtVvViGyG~IGr~vA~~ak-a~Ga~VIV~e~dp~r~~eA~~  295 (477)
T PLN02494        254 GKVAVICGYGDVGKGCAAAMK-AAGARVIVTEIDPICALQALM  295 (477)
T ss_pred             CCEEEEECCCHHHHHHHHHHH-HCCCEEEEEeCCchhhHHHHh
Confidence            57999999994 3 3444443 468899999999976544543

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=90.01  E-value=0.42  Score=51.62  Aligned_cols=106  Identities=17%  Similarity=0.159  Sum_probs=78.8

Q ss_pred             CCCCeEEEEeCchhH-HHHHHHhhCC-CEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCC
Q 038592          261 GFRPKALCVGVGGGA-LVSFLRTQLD-FEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPD  337 (478)
Q Consensus       261 g~~~~VLvIGlGgG~-L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~  337 (478)
                      ..+.+||..=.++|. ..+|..+..+ .+|++-|.|+..++..++.-.+. .+..++.+.+|+.-.+-+.          
T Consensus       108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~----------  177 (525)
T KOG1253|consen  108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEH----------  177 (525)
T ss_pred             cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhc----------
Confidence            346788887666676 3355555555 49999999999999887765443 3467899999999876541          


Q ss_pred             CCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592          338 SFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                      ......||+|=+|-+.+.              ..||..+-+.+++||++.+-.
T Consensus       178 ----------------~~~~~~FDvIDLDPyGs~--------------s~FLDsAvqav~~gGLL~vT~  216 (525)
T KOG1253|consen  178 ----------------PMVAKFFDVIDLDPYGSP--------------SPFLDSAVQAVRDGGLLCVTC  216 (525)
T ss_pred             ----------------cccccccceEecCCCCCc--------------cHHHHHHHHHhhcCCEEEEEe
Confidence                            124578999999876542              459999999999999998754

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=89.88  E-value=1.1  Score=43.77  Aligned_cols=70  Identities=23%  Similarity=0.305  Sum_probs=51.9

Q ss_pred             eEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHH-hcCCCCCCCeEEEEchHHH--HHHHHHhhhcCCCCCCC
Q 038592          265 KALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQ-YFGLEDGEFLQVSVGDAIE--FLEKLARQIVGKNPDSF  339 (478)
Q Consensus       265 ~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~-~Fg~~~d~rl~v~v~Dg~~--~l~~~~~~~~~~~~~~~  339 (478)
                      +++|+|+|  |+.++..|.+. +..|++||.|++.++.+.. .+      -.+++++|+.+  .|+++            
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~-g~~Vv~Id~d~~~~~~~~~~~~------~~~~v~gd~t~~~~L~~a------------   62 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEE-GHNVVLIDRDEERVEEFLADEL------DTHVVIGDATDEDVLEEA------------   62 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhC-CCceEEEEcCHHHHHHHhhhhc------ceEEEEecCCCHHHHHhc------------
Confidence            78999999  67788877754 6799999999999887322 22      36888899876  45542            


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCC
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDS  369 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s  369 (478)
                                      .-..+|+++....+
T Consensus        63 ----------------gi~~aD~vva~t~~   76 (225)
T COG0569          63 ----------------GIDDADAVVAATGN   76 (225)
T ss_pred             ----------------CCCcCCEEEEeeCC
Confidence                            34679999997544

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=89.85  E-value=3.2  Score=42.56  Aligned_cols=44  Identities=23%  Similarity=0.466  Sum_probs=34.3

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL  307 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~  307 (478)
                      ..+|||+|.|+ |.++..+.+..+.+|.+++.+++-++.|++ +|.
T Consensus       167 g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~-~Ga  211 (349)
T TIGR03201       167 GDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG-FGA  211 (349)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH-hCC
Confidence            46899999864 555555666667899999999999999976 564

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=89.82  E-value=2.4  Score=42.65  Aligned_cols=39  Identities=15%  Similarity=0.261  Sum_probs=29.8

Q ss_pred             CeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHH
Q 038592          264 PKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQ  303 (478)
Q Consensus       264 ~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~  303 (478)
                      ++|.+||+|  |+.++..+... +.+|+++|.+++.++.+.+
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~~~   45 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALA-GYDVLLNDVSADRLEAGLA   45 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHH
Confidence            589999999  44555555433 6799999999999887654

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=89.81  E-value=1.5  Score=37.40  Aligned_cols=95  Identities=20%  Similarity=0.184  Sum_probs=58.9

Q ss_pred             EEEEeCchh--HHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHH--HHHHHhhhcCCCCCCCCc
Q 038592          266 ALCVGVGGG--ALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEF--LEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       266 VLvIGlGgG--~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~--l~~~~~~~~~~~~~~~~~  341 (478)
                      |+++|.|.-  .++..|.+ .+.+|++||.|++.++.+++.+       +.++.+|+.+.  ++++              
T Consensus         1 vvI~G~g~~~~~i~~~L~~-~~~~vvvid~d~~~~~~~~~~~-------~~~i~gd~~~~~~l~~a--------------   58 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKE-GGIDVVVIDRDPERVEELREEG-------VEVIYGDATDPEVLERA--------------   58 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHTT-------SEEEES-TTSHHHHHHT--------------
T ss_pred             eEEEcCCHHHHHHHHHHHh-CCCEEEEEECCcHHHHHHHhcc-------cccccccchhhhHHhhc--------------
Confidence            578888732  24455554 3469999999999999998763       57999999864  4441              


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                    .-.+.|.|++..++..            . --.+-...+.+.+...+++-+..+
T Consensus        59 --------------~i~~a~~vv~~~~~d~------------~-n~~~~~~~r~~~~~~~ii~~~~~~   99 (116)
T PF02254_consen   59 --------------GIEKADAVVILTDDDE------------E-NLLIALLARELNPDIRIIARVNDP   99 (116)
T ss_dssp             --------------TGGCESEEEEESSSHH------------H-HHHHHHHHHHHTTTSEEEEEESSH
T ss_pred             --------------CccccCEEEEccCCHH------------H-HHHHHHHHHHHCCCCeEEEEECCH
Confidence                          3456899999654211            1 122233345566666676555443

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=89.71  E-value=2.5  Score=42.82  Aligned_cols=95  Identities=24%  Similarity=0.322  Sum_probs=57.9

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCCE-EEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDFE-VVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~~-V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+|||+|.|+ |.++..+.+..+.+ |.+++.+++-.+.|++ +|..  .-+.....+ .+-+.+..            
T Consensus       164 g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~-~ga~--~~i~~~~~~-~~~~~~~~------------  227 (339)
T cd08239         164 RDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKA-LGAD--FVINSGQDD-VQEIRELT------------  227 (339)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-hCCC--EEEcCCcch-HHHHHHHh------------
Confidence            46999998652 33444455556776 9999999999999966 5642  111112223 33333321            


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                     ....+|+||--+  +              ....+..+.+.|+++|.+++
T Consensus       228 ---------------~~~~~d~vid~~--g--------------~~~~~~~~~~~l~~~G~~v~  260 (339)
T cd08239         228 ---------------SGAGADVAIECS--G--------------NTAARRLALEAVRPWGRLVL  260 (339)
T ss_pred             ---------------CCCCCCEEEECC--C--------------CHHHHHHHHHHhhcCCEEEE
Confidence                           234699887511  1              13456677788999999875

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=89.69  E-value=4.8  Score=37.62  Aligned_cols=116  Identities=18%  Similarity=0.212  Sum_probs=66.1

Q ss_pred             CCeEEEEeCc-hhH-HHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVG-GGA-LVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlG-gG~-L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      .++|.|||.| .|. ++..+ +.++++|.+++..+.-...+... +        +...+--+.+++              
T Consensus        36 g~tvgIiG~G~IG~~vA~~l-~~fG~~V~~~d~~~~~~~~~~~~-~--------~~~~~l~ell~~--------------   91 (178)
T PF02826_consen   36 GKTVGIIGYGRIGRAVARRL-KAFGMRVIGYDRSPKPEEGADEF-G--------VEYVSLDELLAQ--------------   91 (178)
T ss_dssp             TSEEEEESTSHHHHHHHHHH-HHTT-EEEEEESSCHHHHHHHHT-T--------EEESSHHHHHHH--------------
T ss_pred             CCEEEEEEEcCCcCeEeeee-ecCCceeEEecccCChhhhcccc-c--------ceeeehhhhcch--------------
Confidence            5799999999 343 44444 35789999999999877633222 1        122244455543              


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHH
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQE  420 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~  420 (478)
                                         -|+|++=+...+.       ..++++.++|..++    + |.+++|+..-.----+.+++.
T Consensus        92 -------------------aDiv~~~~plt~~-------T~~li~~~~l~~mk----~-ga~lvN~aRG~~vde~aL~~a  140 (178)
T PF02826_consen   92 -------------------ADIVSLHLPLTPE-------TRGLINAEFLAKMK----P-GAVLVNVARGELVDEDALLDA  140 (178)
T ss_dssp             --------------------SEEEE-SSSSTT-------TTTSBSHHHHHTST----T-TEEEEESSSGGGB-HHHHHHH
T ss_pred             -------------------hhhhhhhhccccc-------cceeeeeeeeeccc----c-ceEEEeccchhhhhhhHHHHH
Confidence                               6899995543322       24578888887654    3 667789764311112345666


Q ss_pred             HHHhcCccEEEee
Q 038592          421 FRDVFQELYEIDV  433 (478)
Q Consensus       421 l~~vF~~v~~~~v  433 (478)
                      |++=--.-+.+++
T Consensus       141 L~~g~i~ga~lDV  153 (178)
T PF02826_consen  141 LESGKIAGAALDV  153 (178)
T ss_dssp             HHTTSEEEEEESS
T ss_pred             HhhccCceEEEEC
Confidence            6653222344444

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PLN02256 arogenate dehydrogenase

Probab=89.60  E-value=2.9  Score=42.80  Aligned_cols=106  Identities=18%  Similarity=0.227  Sum_probs=66.6

Q ss_pred             CCCCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCC
Q 038592          261 GFRPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDS  338 (478)
Q Consensus       261 g~~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~  338 (478)
                      +...+|.+||+|  ||+++..|.+. +.+|.+++.++. .+.|++ +|.      .. ..|.-+.+              
T Consensus        34 ~~~~kI~IIG~G~mG~slA~~L~~~-G~~V~~~d~~~~-~~~a~~-~gv------~~-~~~~~e~~--------------   89 (304)
T PLN02256         34 SRKLKIGIVGFGNFGQFLAKTFVKQ-GHTVLATSRSDY-SDIAAE-LGV------SF-FRDPDDFC--------------   89 (304)
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhC-CCEEEEEECccH-HHHHHH-cCC------ee-eCCHHHHh--------------
Confidence            446799999999  67788777653 578999999974 355554 343      11 23333322              


Q ss_pred             CCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHH-HHccCcCcEEEEEeCCCCchHHHHH
Q 038592          339 FGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAA-RLILSDFGIFVMNVIPPNRSFYDML  417 (478)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~-~~~L~~~Gilv~N~~~~~~~~~~~v  417 (478)
                                        ....|+|++-+           ||.  ...+++..+ ...++++ .+++++.+-    +..+
T Consensus        90 ------------------~~~aDvVilav-----------p~~--~~~~vl~~l~~~~l~~~-~iviDv~Sv----K~~~  133 (304)
T PLN02256         90 ------------------EEHPDVVLLCT-----------SIL--STEAVLRSLPLQRLKRS-TLFVDVLSV----KEFP  133 (304)
T ss_pred             ------------------hCCCCEEEEec-----------CHH--HHHHHHHhhhhhccCCC-CEEEecCCc----hHHH
Confidence                              12369999922           332  346777777 4567765 566788764    2345


Q ss_pred             HHHHHHhcC
Q 038592          418 IQEFRDVFQ  426 (478)
Q Consensus       418 ~~~l~~vF~  426 (478)
                      ++.+++.++
T Consensus       134 ~~~~~~~l~  142 (304)
T PLN02256        134 KNLLLQVLP  142 (304)
T ss_pred             HHHHHHhCC
Confidence            667777765

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=89.54  E-value=3.9  Score=42.68  Aligned_cols=45  Identities=20%  Similarity=0.239  Sum_probs=36.2

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGL  307 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~  307 (478)
                      ..+|||+|.|+ |.++..+.+..+. +|.+++.+++..+.++++++.
T Consensus       185 g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~  231 (386)
T cd08283         185 GDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGA  231 (386)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc
Confidence            46899998876 6666667766675 699999999999999998653

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=89.19  E-value=3.7  Score=41.89  Aligned_cols=96  Identities=14%  Similarity=0.212  Sum_probs=58.5

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCCE-EEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDFE-VVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~~-V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+|||.|.|+ |.++..+.+..+.+ |.+++.+++-.+.+++ +|..  .-+.....+ .+.+.+..            
T Consensus       161 g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~-~Ga~--~~i~~~~~~-~~~~~~~~------------  224 (347)
T PRK10309        161 GKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS-LGAM--QTFNSREMS-APQIQSVL------------  224 (347)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH-cCCc--eEecCcccC-HHHHHHHh------------
Confidence            46999998653 33444455556775 7899999999999866 5542  111111223 22232211            


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                     .+..+|.+++|.-..               ...+....+.|+++|.+++
T Consensus       225 ---------------~~~~~d~~v~d~~G~---------------~~~~~~~~~~l~~~G~iv~  258 (347)
T PRK10309        225 ---------------RELRFDQLILETAGV---------------PQTVELAIEIAGPRAQLAL  258 (347)
T ss_pred             ---------------cCCCCCeEEEECCCC---------------HHHHHHHHHHhhcCCEEEE
Confidence                           234588777774211               3467778899999999875

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=89.15  E-value=3.1  Score=43.10  Aligned_cols=95  Identities=24%  Similarity=0.295  Sum_probs=59.0

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+|||.|.|+ |.++..+.+..+. +|.+++.++.-.+.|++ +|..  .-+.....|..+.+.+.             
T Consensus       192 g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~-~Ga~--~~i~~~~~~~~~~i~~~-------------  255 (371)
T cd08281         192 GQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE-LGAT--ATVNAGDPNAVEQVREL-------------  255 (371)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH-cCCc--eEeCCCchhHHHHHHHH-------------
Confidence            46899998652 4455555666677 79999999999999976 4642  11111122333444332             


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                     ....+|+||- . .+              ..+.++.+.+.|+++|.+++
T Consensus       256 ---------------~~~g~d~vid-~-~G--------------~~~~~~~~~~~l~~~G~iv~  288 (371)
T cd08281         256 ---------------TGGGVDYAFE-M-AG--------------SVPALETAYEITRRGGTTVT  288 (371)
T ss_pred             ---------------hCCCCCEEEE-C-CC--------------ChHHHHHHHHHHhcCCEEEE
Confidence                           1225898874 2 11              13466777788999998875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=88.71  E-value=3.3  Score=42.70  Aligned_cols=60  Identities=18%  Similarity=0.214  Sum_probs=48.0

Q ss_pred             CCeEEEEeCc-hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHH
Q 038592          263 RPKALCVGVG-GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEK  326 (478)
Q Consensus       263 ~~~VLvIGlG-gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~  326 (478)
                      +.+|.|||+| .|+-+.-+.-.++..|+..|++..-++.-...|+    .|+++.......+-+.
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~----~rv~~~~st~~~iee~  228 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG----GRVHTLYSTPSNIEEA  228 (371)
T ss_pred             CccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC----ceeEEEEcCHHHHHHH
Confidence            6789999999 5666655665668999999999999999888886    5788888887776443

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=88.57  E-value=1.9  Score=43.47  Aligned_cols=40  Identities=20%  Similarity=0.282  Sum_probs=31.5

Q ss_pred             CeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHh
Q 038592          264 PKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQY  304 (478)
Q Consensus       264 ~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~  304 (478)
                      ++|.+||+|  |..++..+... +.+|.++|.+++.++.+++.
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~   46 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAA-GMDVWLLDSDPAALSRGLDS   46 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHH
Confidence            589999999  55677666544 68999999999998866543

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=88.51  E-value=5.7  Score=39.39  Aligned_cols=44  Identities=23%  Similarity=0.243  Sum_probs=32.6

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCCE-EEEEECChHHHHHHHHhcCC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDFE-VVGVEMDEVVLRVARQYFGL  307 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~~-V~~VEiDp~Vl~vA~~~Fg~  307 (478)
                      ..+|||+|.|+ |.++..+.+..+.+ |.+++.++.-.+.|++ +|.
T Consensus       121 g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~-~Ga  166 (280)
T TIGR03366       121 GRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS-FGA  166 (280)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-cCC
Confidence            46899998763 44555566666765 9999999999999987 454

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=88.32  E-value=2.2  Score=43.51  Aligned_cols=40  Identities=20%  Similarity=0.208  Sum_probs=29.5

Q ss_pred             CCeEEEEeCchhH--HHHHHHhhCCCEEEEEECChHHHHHHHH
Q 038592          263 RPKALCVGVGGGA--LVSFLRTQLDFEVVGVEMDEVVLRVARQ  303 (478)
Q Consensus       263 ~~~VLvIGlGgG~--L~~~L~~~~~~~V~~VEiDp~Vl~vA~~  303 (478)
                      ..+|+|||.|.-+  +...|+ .++.+|++++.++.-.+.++.
T Consensus       152 g~kvlViG~G~iG~~~a~~L~-~~Ga~V~v~~r~~~~~~~~~~  193 (296)
T PRK08306        152 GSNVLVLGFGRTGMTLARTLK-ALGANVTVGARKSAHLARITE  193 (296)
T ss_pred             CCEEEEECCcHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHH
Confidence            5799999999533  233333 357899999999987777765

>cd08293 PTGR2 Prostaglandin reductase

Probab=88.30  E-value=5  Score=40.63  Aligned_cols=94  Identities=16%  Similarity=0.246  Sum_probs=60.4

Q ss_pred             CeEEEEeCc--hhHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          264 PKALCVGVG--GGALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       264 ~~VLvIGlG--gG~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      .+|||.|.+  .|..+..+.++.+. +|.++.-+++-.+.+++.+|..  .-+.....|..+.+++.             
T Consensus       156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~--~vi~~~~~~~~~~i~~~-------------  220 (345)
T cd08293         156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFD--AAINYKTDNVAERLREL-------------  220 (345)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCc--EEEECCCCCHHHHHHHH-------------
Confidence            689999963  45566666667787 8999999999888888767752  21111123444444432             


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                     ....+|+|+ |.-.+               . .+..+.+.|+++|.++.
T Consensus       221 ---------------~~~gvd~vi-d~~g~---------------~-~~~~~~~~l~~~G~iv~  252 (345)
T cd08293         221 ---------------CPEGVDVYF-DNVGG---------------E-ISDTVISQMNENSHIIL  252 (345)
T ss_pred             ---------------CCCCceEEE-ECCCc---------------H-HHHHHHHHhccCCEEEE
Confidence                           224589887 42111               1 24667788999999885

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=87.94  E-value=4.2  Score=40.90  Aligned_cols=122  Identities=14%  Similarity=0.120  Sum_probs=74.4

Q ss_pred             eEEEEeCchhHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCccc
Q 038592          265 KALCVGVGGGALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACS  343 (478)
Q Consensus       265 ~VLvIGlGgG~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~  343 (478)
                      +|+.+-+|.|++...+.+. ++ .+.++|+|+..++..+..|.-.      ++++|..++...                 
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~-G~~~v~a~e~~~~a~~~~~~N~~~~------~~~~Di~~~~~~-----------------   57 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKA-GFEIVAANEIDKSAAETYEANFPNK------LIEGDITKIDEK-----------------   57 (275)
T ss_pred             cEEEEccCcchHHHHHHHc-CCEEEEEEeCCHHHHHHHHHhCCCC------CccCccccCchh-----------------
Confidence            6788889999888777754 45 5788999999999999988521      667777665322                 


Q ss_pred             ccCCCccCCCCCCCCceeEEEEeCCCCCCC-----CCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC----CchHH
Q 038592          344 LKDGNFLDNSDRVDNKFDVIMVDLDSGDAR-----NGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP----NRSFY  414 (478)
Q Consensus       344 ~~~~~~~~~~~~~~~~yDvIivDv~s~d~~-----~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~----~~~~~  414 (478)
                                 .....+|+|+.+....+.+     .+...+ ..-+-.+|++.+.. ++|.=+++=|+..-    ....+
T Consensus        58 -----------~~~~~~D~l~~gpPCq~fS~ag~~~~~~d~-r~~L~~~~~~~i~~-~~P~~~v~ENV~g~~~~~~~~~~  124 (275)
T cd00315          58 -----------DFIPDIDLLTGGFPCQPFSIAGKRKGFEDT-RGTLFFEIIRILKE-KKPKYFLLENVKGLLTHDNGNTL  124 (275)
T ss_pred             -----------hcCCCCCEEEeCCCChhhhHHhhcCCCCCc-hHHHHHHHHHHHHh-cCCCEEEEEcCcchhccCchHHH
Confidence                       0034599999976443221     111111 11122456655554 47765555588653    23445


Q ss_pred             HHHHHHHHH
Q 038592          415 DMLIQEFRD  423 (478)
Q Consensus       415 ~~v~~~l~~  423 (478)
                      +.+++.|.+
T Consensus       125 ~~i~~~l~~  133 (275)
T cd00315         125 KVILNTLEE  133 (275)
T ss_pred             HHHHHHHHh
Confidence            566666654

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=87.84  E-value=5.1  Score=40.05  Aligned_cols=96  Identities=22%  Similarity=0.336  Sum_probs=60.4

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+|||.|.|+ |.++..+.+..+.+|++++.+++..+.+++ +|..  ..+.....+..+.++.               
T Consensus       166 ~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~-~g~~--~~~~~~~~~~~~~~~~---------------  227 (338)
T cd08254         166 GETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE-LGAD--EVLNSLDDSPKDKKAA---------------  227 (338)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH-hCCC--EEEcCCCcCHHHHHHH---------------
Confidence            46899977552 555556666678899999999999999966 5542  1111111233333311               


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                   ..+..+|+++- . .+              ....++.+.+.|+++|.++.-
T Consensus       228 -------------~~~~~~D~vid-~-~g--------------~~~~~~~~~~~l~~~G~~v~~  262 (338)
T cd08254         228 -------------GLGGGFDVIFD-F-VG--------------TQPTFEDAQKAVKPGGRIVVV  262 (338)
T ss_pred             -------------hcCCCceEEEE-C-CC--------------CHHHHHHHHHHhhcCCEEEEE
Confidence                         13456997764 1 10              135778889999999998853

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=87.77  E-value=2.1  Score=36.96  Aligned_cols=90  Identities=23%  Similarity=0.313  Sum_probs=61.0

Q ss_pred             chhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccC
Q 038592          272 GGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLD  351 (478)
Q Consensus       272 GgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (478)
                      |-|.++..+.++.+.+|.+++.++.-.+.++++ |..  .-+.....|..+.+++..                       
T Consensus         1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~-Ga~--~~~~~~~~~~~~~i~~~~-----------------------   54 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKEL-GAD--HVIDYSDDDFVEQIRELT-----------------------   54 (130)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-TES--EEEETTTSSHHHHHHHHT-----------------------
T ss_pred             ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh-ccc--cccccccccccccccccc-----------------------
Confidence            457777777777789999999999999999885 421  111111123455555531                       


Q ss_pred             CCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeC
Q 038592          352 NSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVI  407 (478)
Q Consensus       352 ~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~  407 (478)
                          .+..+|+||--+  +              ..+.++.+.+.|+++|.+++--.
T Consensus        55 ----~~~~~d~vid~~--g--------------~~~~~~~~~~~l~~~G~~v~vg~   90 (130)
T PF00107_consen   55 ----GGRGVDVVIDCV--G--------------SGDTLQEAIKLLRPGGRIVVVGV   90 (130)
T ss_dssp             ----TTSSEEEEEESS--S--------------SHHHHHHHHHHEEEEEEEEEESS
T ss_pred             ----ccccceEEEEec--C--------------cHHHHHHHHHHhccCCEEEEEEc
Confidence                235799998721  1              26789999999999999986433

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PLN02712 arogenate dehydrogenase

Probab=87.68  E-value=3.9  Score=46.45  Aligned_cols=104  Identities=19%  Similarity=0.239  Sum_probs=64.6

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      +.+|.|||+|  ||.+++.|.+. +.+|.+++.+... +.|+++ |.      . ...|..+.+                
T Consensus        52 ~~kIgIIG~G~mG~slA~~L~~~-G~~V~~~dr~~~~-~~A~~~-Gv------~-~~~d~~e~~----------------  105 (667)
T PLN02712         52 QLKIAIIGFGNYGQFLAKTLISQ-GHTVLAHSRSDHS-LAARSL-GV------S-FFLDPHDLC----------------  105 (667)
T ss_pred             CCEEEEEccCHHHHHHHHHHHHC-CCEEEEEeCCHHH-HHHHHc-CC------E-EeCCHHHHh----------------
Confidence            5789999999  67788887764 6799999988553 455443 42      1 133433332                


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHH-HccCcCcEEEEEeCCCCchHHHHHHH
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAAR-LILSDFGIFVMNVIPPNRSFYDMLIQ  419 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~-~~L~~~Gilv~N~~~~~~~~~~~v~~  419 (478)
                                      ....|+|++-+           |+.  ...+++..+. ..+++ |.+++++.+-..    .+++
T Consensus       106 ----------------~~~aDvViLav-----------P~~--~~~~vl~~l~~~~l~~-g~iVvDv~SvK~----~~~~  151 (667)
T PLN02712        106 ----------------ERHPDVILLCT-----------SII--STENVLKSLPLQRLKR-NTLFVDVLSVKE----FAKN  151 (667)
T ss_pred             ----------------hcCCCEEEEcC-----------CHH--HHHHHHHhhhhhcCCC-CeEEEECCCCcH----HHHH
Confidence                            12369999932           332  3466777765 45666 457888875543    3455


Q ss_pred             HHHHhcC
Q 038592          420 EFRDVFQ  426 (478)
Q Consensus       420 ~l~~vF~  426 (478)
                      .+.+.++
T Consensus       152 ~l~~~l~  158 (667)
T PLN02712        152 LLLDYLP  158 (667)
T ss_pred             HHHHhcC
Confidence            5666654

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=87.67  E-value=8.4  Score=41.45  Aligned_cols=41  Identities=20%  Similarity=0.160  Sum_probs=28.8

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCCEEEEEECChHHHHHHHH
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDFEVVGVEMDEVVLRVARQ  303 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~  303 (478)
                      .++|+|+|.|. |.......+.++.+|+++|+||.-...|..
T Consensus       212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~  253 (425)
T PRK05476        212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAM  253 (425)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh
Confidence            57999999994 332222333457899999999987665544

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=87.47  E-value=9.3  Score=38.73  Aligned_cols=93  Identities=18%  Similarity=0.211  Sum_probs=58.8

Q ss_pred             eEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          265 KALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       265 ~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      +|.+||+|  |+.++.-|.+. +.+|.+.+.+++.++.+++. +...       ..+..+..+.                
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~-g~~V~~~dr~~~~~~~l~~~-g~~~-------~~s~~~~~~~----------------   56 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKR-GHDCVGYDHDQDAVKAMKED-RTTG-------VANLRELSQR----------------   56 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHc-CCcc-------cCCHHHHHhh----------------
Confidence            68999999  34566666543 67999999999988877653 2211       1222222211                


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPN  410 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~  410 (478)
                                    -..-|+|++=+            |.. ...+.++.+...|+++ -++++..+..
T Consensus        57 --------------~~~~dvIi~~v------------p~~-~~~~v~~~l~~~l~~g-~ivid~st~~   96 (298)
T TIGR00872        57 --------------LSAPRVVWVMV------------PHG-IVDAVLEELAPTLEKG-DIVIDGGNSY   96 (298)
T ss_pred             --------------cCCCCEEEEEc------------Cch-HHHHHHHHHHhhCCCC-CEEEECCCCC
Confidence                          12468898833            333 4577788888888775 5667776554

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=87.30  E-value=8.2  Score=40.70  Aligned_cols=44  Identities=16%  Similarity=0.119  Sum_probs=33.1

Q ss_pred             CCeEEEEeC-c-hhHHHHHHHhhCC---CEEEEEECChHHHHHHHHhcC
Q 038592          263 RPKALCVGV-G-GGALVSFLRTQLD---FEVVGVEMDEVVLRVARQYFG  306 (478)
Q Consensus       263 ~~~VLvIGl-G-gG~L~~~L~~~~~---~~V~~VEiDp~Vl~vA~~~Fg  306 (478)
                      ..+|||+|+ | -|.++..+.+..+   .+|.+++.+++-++.|+++++
T Consensus       176 g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~  224 (410)
T cd08238         176 GGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFP  224 (410)
T ss_pred             CCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhcc
Confidence            358999984 3 4556655566543   389999999999999999765

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=87.19  E-value=6.6  Score=32.21  Aligned_cols=56  Identities=25%  Similarity=0.232  Sum_probs=37.0

Q ss_pred             eEEEEeCc--hhHHHHHHHhhC--CCEEEEE-ECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHH
Q 038592          265 KALCVGVG--GGALVSFLRTQL--DFEVVGV-EMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEK  326 (478)
Q Consensus       265 ~VLvIGlG--gG~L~~~L~~~~--~~~V~~V-EiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~  326 (478)
                      +|.+||.|  |.+++.-|.+.-  ..+|..+ +.+++-++-..+.++      ..+...|-.+.+++
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~------~~~~~~~~~~~~~~   61 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG------VQATADDNEEAAQE   61 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT------TEEESEEHHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc------cccccCChHHhhcc
Confidence            57889888  445555555542  2689966 999998887766665      34444466666643

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PHA01634 hypothetical protein

Probab=87.19  E-value=1.6  Score=39.36  Aligned_cols=147  Identities=10%  Similarity=0.066  Sum_probs=91.0

Q ss_pred             ccchhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCe
Q 038592          234 VLVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFL  313 (478)
Q Consensus       234 ~L~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl  313 (478)
                      .+.+.|-+.....-..+.-         ..++|++||.+-|..+.+..-.-..+|.++|.+|...+..++...+.     
T Consensus         9 ~~~c~ywrey~~~Y~~idv---------k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~n-----   74 (156)
T PHA01634          9 KLECDYWREYPHAYGMLNV---------YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYF-----   74 (156)
T ss_pred             HccchHHHHHHHHhhheee---------cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhh-----
Confidence            3567888877777655532         25799999999999887766443469999999999999988744321     


Q ss_pred             EEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 038592          314 QVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAAR  393 (478)
Q Consensus       314 ~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~  393 (478)
                       .++.-|.--- +                          .+..=+.||+-.+|.+.-.          ..++.+.|+..+
T Consensus        75 -nI~DK~v~~~-e--------------------------W~~~Y~~~Di~~iDCeGCE----------~~l~v~~l~ky~  116 (156)
T PHA01634         75 -NICDKAVMKG-E--------------------------WNGEYEDVDIFVMDCEGCE----------EKLNVSMLKKYK  116 (156)
T ss_pred             -eeeeceeecc-c--------------------------ccccCCCcceEEEEccchH----------HhcCHHHHHHHH
Confidence             1111111100 0                          0113356999999986533          346677777776


Q ss_pred             HccCcCcEEEEEeCCCCchHHHHHHHHHHHhcCccEEEeecccceEEEEEE
Q 038592          394 LILSDFGIFVMNVIPPNRSFYDMLIQEFRDVFQELYEIDVGNEENFVLIAT  444 (478)
Q Consensus       394 ~~L~~~Gilv~N~~~~~~~~~~~v~~~l~~vF~~v~~~~v~~~~N~Vl~a~  444 (478)
                      +-.     +.+.-|..      .-+..|++.....+.+- .+++-++.+|.
T Consensus       117 q~c-----i~ihdwt~------nrvel~rk~~g~~ftyv-sddgre~~lck  155 (156)
T PHA01634        117 QWC-----IGIHDWTK------NRVELMRKMEGATFTYV-SDDGREITLCK  155 (156)
T ss_pred             hhe-----eeeehhhh------hHHHHHHHhcCcEEEEE-ccCCcEEEEee
Confidence            532     22333332      23566777777666554 34456666663

>PLN02740 Alcohol dehydrogenase-like

Probab=87.14  E-value=8.9  Score=39.91  Aligned_cols=44  Identities=16%  Similarity=0.344  Sum_probs=33.1

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGL  307 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~  307 (478)
                      ..+|||+|.|+ |.++..+.+..+. +|.+++.+++-++.|++ +|.
T Consensus       199 g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~-~Ga  244 (381)
T PLN02740        199 GSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE-MGI  244 (381)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH-cCC
Confidence            46999998752 4455555566677 79999999999999976 464

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=87.02  E-value=3  Score=43.93  Aligned_cols=32  Identities=25%  Similarity=0.402  Sum_probs=25.1

Q ss_pred             CCeEEEEe-Cc--hhHHHHHHHhhCCCEEEEEECCh
Q 038592          263 RPKALCVG-VG--GGALVSFLRTQLDFEVVGVEMDE  295 (478)
Q Consensus       263 ~~~VLvIG-lG--gG~L~~~L~~~~~~~V~~VEiDp  295 (478)
                      ..+|.||| +|  ||+++..|.+. +..|++++.++
T Consensus        98 ~~~I~IiGG~GlmG~slA~~l~~~-G~~V~~~d~~~  132 (374)
T PRK11199         98 LRPVVIVGGKGQLGRLFAKMLTLS-GYQVRILEQDD  132 (374)
T ss_pred             cceEEEEcCCChhhHHHHHHHHHC-CCeEEEeCCCc
Confidence            47899999 78  67788887764 57899998763

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=86.80  E-value=3.5  Score=41.90  Aligned_cols=39  Identities=21%  Similarity=0.202  Sum_probs=31.1

Q ss_pred             CeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHH
Q 038592          264 PKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQ  303 (478)
Q Consensus       264 ~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~  303 (478)
                      .+|.|||+|  |++++..|.+. +.+|+++|.+++.++.++.
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~-G~~V~v~d~~~~~~~~~~~   43 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARA-GHEVRLWDADPAAAAAAPA   43 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHC-CCeeEEEeCCHHHHHHHHH
Confidence            479999999  55677777664 6799999999998887654

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=86.71  E-value=7.7  Score=39.16  Aligned_cols=40  Identities=23%  Similarity=0.161  Sum_probs=30.3

Q ss_pred             CeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHh
Q 038592          264 PKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQY  304 (478)
Q Consensus       264 ~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~  304 (478)
                      .+|.+||+|  |+.++..|.+. +.+|++++.++..++..++.
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~~-g~~V~~~~r~~~~~~~~~~~   43 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLARN-GHDVTLWARDPEQAAEINAD   43 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHc
Confidence            379999999  55666666643 57899999999888766554

>PRK13869 plasmid-partitioning protein RepA; Provisional

Probab=86.68  E-value=9.7  Score=40.57  Aligned_cols=43  Identities=21%  Similarity=0.388  Sum_probs=26.0

Q ss_pred             CCeEEEEe---CchhH--HHHHHHhhC---CCEEEEEECChHHHHHHHHhcCC
Q 038592          263 RPKALCVG---VGGGA--LVSFLRTQL---DFEVVGVEMDEVVLRVARQYFGL  307 (478)
Q Consensus       263 ~~~VLvIG---lGgG~--L~~~L~~~~---~~~V~~VEiDp~Vl~vA~~~Fg~  307 (478)
                      +.+|+.|.   +|.|-  ++.-|...+   +.+|.+||+||.  .-+..+||+
T Consensus       120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ--~~lt~~~g~  170 (405)
T PRK13869        120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQ--ASLSALLGV  170 (405)
T ss_pred             CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCC--CCHHHHcCC
Confidence            34665555   44442  333333332   679999999998  334567875

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=86.40  E-value=8  Score=38.62  Aligned_cols=94  Identities=15%  Similarity=0.208  Sum_probs=60.4

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+|||.|.+  .|.++.-+.+..+.+|.++.-+++-.+.+++ +|..  .-+.....|..+.+.+.             
T Consensus       144 g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~-~Ga~--~vi~~~~~~~~~~v~~~-------------  207 (329)
T cd08294         144 GETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE-LGFD--AVFNYKTVSLEEALKEA-------------  207 (329)
T ss_pred             CCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCCC--EEEeCCCccHHHHHHHH-------------
Confidence            4689999853  4556666666678899999999999999988 6752  11111122333333331             


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                     ....+|+|+ |.-.                .+.++.+.+.|+++|.++.
T Consensus       208 ---------------~~~gvd~vl-d~~g----------------~~~~~~~~~~l~~~G~iv~  239 (329)
T cd08294         208 ---------------APDGIDCYF-DNVG----------------GEFSSTVLSHMNDFGRVAV  239 (329)
T ss_pred             ---------------CCCCcEEEE-ECCC----------------HHHHHHHHHhhccCCEEEE
Confidence                           224589877 4211                2456778888999999874

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=86.38  E-value=0.7  Score=42.62  Aligned_cols=42  Identities=21%  Similarity=0.260  Sum_probs=34.7

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYF  305 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~F  305 (478)
                      .++++.+|+|.|-|. +-...+ .-.|.++||||+-++++++..
T Consensus        49 gkkl~DLgcgcGmLs-~a~sm~~~e~vlGfDIdpeALEIf~rNa   91 (185)
T KOG3420|consen   49 GKKLKDLGCGCGMLS-IAFSMPKNESVLGFDIDPEALEIFTRNA   91 (185)
T ss_pred             CcchhhhcCchhhhH-HHhhcCCCceEEeeecCHHHHHHHhhch
Confidence            578999999999988 333445 469999999999999998764

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=86.26  E-value=3.9  Score=42.32  Aligned_cols=100  Identities=14%  Similarity=0.069  Sum_probs=62.9

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcC----------CCC---CCCeEEEEchHHHHHHHH
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFG----------LED---GEFLQVSVGDAIEFLEKL  327 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg----------~~~---d~rl~v~v~Dg~~~l~~~  327 (478)
                      .++|.|||+|  |..++..+.. .+.+|+.+|.+|+.++.++.+..          +..   ..++++.. |    +++ 
T Consensus         7 i~~VaVIGaG~MG~giA~~~a~-aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~----l~~-   79 (321)
T PRK07066          7 IKTFAAIGSGVIGSGWVARALA-HGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-T----IEA-   79 (321)
T ss_pred             CCEEEEECcCHHHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-C----HHH-
Confidence            3689999999  5556655554 37999999999998877655421          110   01222111 1    111 


Q ss_pred             HhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC-ChHHHHHHHHHccCcCcEEEEEe
Q 038592          328 ARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF-VRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f-~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                                  .-..-|+|+--+            |+.+ +..++|..+-+.++++-+|..|.
T Consensus        80 ----------------------------av~~aDlViEav------------pE~l~vK~~lf~~l~~~~~~~aIlaSnT  119 (321)
T PRK07066         80 ----------------------------CVADADFIQESA------------PEREALKLELHERISRAAKPDAIIASST  119 (321)
T ss_pred             ----------------------------HhcCCCEEEECC------------cCCHHHHHHHHHHHHHhCCCCeEEEECC
Confidence                                        112357777732            4443 46788899999999988888888


Q ss_pred             CCC
Q 038592          407 IPP  409 (478)
Q Consensus       407 ~~~  409 (478)
                      .+-
T Consensus       120 S~l  122 (321)
T PRK07066        120 SGL  122 (321)
T ss_pred             Ccc
Confidence            754

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=86.04  E-value=4  Score=43.17  Aligned_cols=85  Identities=13%  Similarity=0.267  Sum_probs=54.2

Q ss_pred             EEEEECChHHHHHHHHhcCC-CCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEe
Q 038592          288 VVGVEMDEVVLRVARQYFGL-EDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVD  366 (478)
Q Consensus       288 V~~VEiDp~Vl~vA~~~Fg~-~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivD  366 (478)
                      +.++|||+.+++.|+..--- ...+.+++..+|+..+-.                              .-..||+||.+
T Consensus       257 ~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~------------------------------~~~~~gvvI~N  306 (381)
T COG0116         257 IYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKE------------------------------PLEEYGVVISN  306 (381)
T ss_pred             EEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCC------------------------------CCCcCCEEEeC
Confidence            77999999999999976421 124679999999987721                              11679999996


Q ss_pred             CCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          367 LDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       367 v~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                      ..=+.-.+.-. -...|| .+|.+.+++.++--+.+++
T Consensus       307 PPYGeRlg~~~-~v~~LY-~~fg~~lk~~~~~ws~~v~  342 (381)
T COG0116         307 PPYGERLGSEA-LVAKLY-REFGRTLKRLLAGWSRYVF  342 (381)
T ss_pred             CCcchhcCChh-hHHHHH-HHHHHHHHHHhcCCceEEE
Confidence            43332211000 001122 5677777788877666664

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=86.03  E-value=13  Score=37.57  Aligned_cols=107  Identities=24%  Similarity=0.275  Sum_probs=64.6

Q ss_pred             eEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          265 KALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       265 ~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      +|.+||+|  |..++..|.+. +.+|.+.+.+++..+.+++ .|.      + ...+..+.+++                
T Consensus         2 ~Ig~IGlG~mG~~mA~~L~~~-g~~v~v~dr~~~~~~~~~~-~g~------~-~~~s~~~~~~~----------------   56 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERLRED-GHEVVGYDVNQEAVDVAGK-LGI------T-ARHSLEELVSK----------------   56 (299)
T ss_pred             EEEEEcccHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHH-CCC------e-ecCCHHHHHHh----------------
Confidence            68899999  44566656543 5789999999988777654 332      1 12233344322                


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHHH
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEFR  422 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l~  422 (478)
                                    ....|+||+-+.+           .. ..++.+..+...|++ |-+++++.+.++.....+.+.+.
T Consensus        57 --------------~~~advVi~~vp~-----------~~-~~~~v~~~i~~~l~~-g~ivid~st~~~~~~~~~~~~~~  109 (299)
T PRK12490         57 --------------LEAPRTIWVMVPA-----------GE-VTESVIKDLYPLLSP-GDIVVDGGNSRYKDDLRRAEELA  109 (299)
T ss_pred             --------------CCCCCEEEEEecC-----------ch-HHHHHHHHHhccCCC-CCEEEECCCCCchhHHHHHHHHH
Confidence                          1235888884322           11 235566777777766 55777886665555556666665


Q ss_pred             H
Q 038592          423 D  423 (478)
Q Consensus       423 ~  423 (478)
                      +
T Consensus       110 ~  110 (299)
T PRK12490        110 E  110 (299)
T ss_pred             H
Confidence            4

>TIGR00936 ahcY adenosylhomocysteinase

Probab=85.54  E-value=29  Score=37.20  Aligned_cols=41  Identities=17%  Similarity=0.184  Sum_probs=29.4

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCCEEEEEECChHHHHHHHH
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDFEVVGVEMDEVVLRVARQ  303 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~  303 (478)
                      .++|+|+|.|. |.......+.++.+|.++|.||.-...|+.
T Consensus       195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~  236 (406)
T TIGR00936       195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAM  236 (406)
T ss_pred             cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHh
Confidence            57999999995 433333444568899999999976655544

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=85.38  E-value=5.3  Score=40.33  Aligned_cols=121  Identities=18%  Similarity=0.078  Sum_probs=63.8

Q ss_pred             CCeEEEEeCch---hHHHHHHHh-hCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCC
Q 038592          263 RPKALCVGVGG---GALVSFLRT-QLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDS  338 (478)
Q Consensus       263 ~~~VLvIGlGg---G~L~~~L~~-~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~  338 (478)
                      -...|.||+|-   |.+-...++ .++.+|+.||.||.|+.-++.-+.-....+..++.+|.++-=.=+ ....      
T Consensus        69 IrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL-~~p~------  141 (267)
T PF04672_consen   69 IRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAIL-AHPE------  141 (267)
T ss_dssp             --EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHH-CSHH------
T ss_pred             cceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHh-cCHH------
Confidence            46899999994   333322222 357999999999999999998876433334899999988742111 1000      


Q ss_pred             CCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          339 FGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                ..... .-++..=++++.+-.        +-|..=--...+..++..|.||..|++.-.+.
T Consensus       142 ----------~~~~l-D~~rPVavll~~vLh--------~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~  193 (267)
T PF04672_consen  142 ----------VRGLL-DFDRPVAVLLVAVLH--------FVPDDDDPAGIVARLRDALAPGSYLAISHATD  193 (267)
T ss_dssp             ----------HHCC---TTS--EEEECT-GG--------GS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred             ----------HHhcC-CCCCCeeeeeeeeec--------cCCCccCHHHHHHHHHHhCCCCceEEEEecCC
Confidence                      00000 124556677775521        11121123789999999999999999865544

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PRK08655 prephenate dehydrogenase; Provisional

Probab=85.29  E-value=13  Score=40.07  Aligned_cols=102  Identities=22%  Similarity=0.404  Sum_probs=61.8

Q ss_pred             eEEEEe-Cc--hhHHHHHHHhhCCCEEEEEECChHHH-HHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          265 KALCVG-VG--GGALVSFLRTQLDFEVVGVEMDEVVL-RVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       265 ~VLvIG-lG--gG~L~~~L~~~~~~~V~~VEiDp~Vl-~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      +|++|| +|  |++++..|.+. +.+|++++.++... +.|.+ +|.      . ...|..+.+                
T Consensus         2 kI~IIGG~G~mG~slA~~L~~~-G~~V~v~~r~~~~~~~~a~~-~gv------~-~~~~~~e~~----------------   56 (437)
T PRK08655          2 KISIIGGTGGLGKWFARFLKEK-GFEVIVTGRDPKKGKEVAKE-LGV------E-YANDNIDAA----------------   56 (437)
T ss_pred             EEEEEecCCHHHHHHHHHHHHC-CCEEEEEECChHHHHHHHHH-cCC------e-eccCHHHHh----------------
Confidence            689998 56  45577766653 56899999998775 55544 332      1 112222222                


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHH
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQE  420 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~  420 (478)
                                       ...|+||+-+            |.. ...+++..+...++++. +++++.+-..    ...+.
T Consensus        57 -----------------~~aDvVIlav------------p~~-~~~~vl~~l~~~l~~~~-iViDvsSvK~----~~~~~  101 (437)
T PRK08655         57 -----------------KDADIVIISV------------PIN-VTEDVIKEVAPHVKEGS-LLMDVTSVKE----RPVEA  101 (437)
T ss_pred             -----------------ccCCEEEEec------------CHH-HHHHHHHHHHhhCCCCC-EEEEcccccH----HHHHH
Confidence                             2369999832            222 23678888888888755 6666665433    33556


Q ss_pred             HHHhcC
Q 038592          421 FRDVFQ  426 (478)
Q Consensus       421 l~~vF~  426 (478)
                      +.+.++
T Consensus       102 l~~~~~  107 (437)
T PRK08655        102 MEEYAP  107 (437)
T ss_pred             HHHhcC
Confidence            666665

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=85.05  E-value=3.6  Score=41.88  Aligned_cols=32  Identities=25%  Similarity=0.417  Sum_probs=25.1

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECCh
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDE  295 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp  295 (478)
                      ..+|+|||+|  ||.++..|.+. +.+|+.+.-++
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~-g~~V~~~~r~~   38 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARA-GFDVHFLLRSD   38 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHC-CCeEEEEEeCC
Confidence            5689999999  66778777664 57888888876

>cd08230 glucose_DH Glucose dehydrogenase

Probab=85.04  E-value=6.6  Score=40.28  Aligned_cols=44  Identities=25%  Similarity=0.392  Sum_probs=33.2

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCCEEEEEEC---ChHHHHHHHHhcCC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDFEVVGVEM---DEVVLRVARQYFGL  307 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~~V~~VEi---Dp~Vl~vA~~~Fg~  307 (478)
                      ..+|||+|.|+ |.++..+.+..+.+|++++.   ++.-.+.|++ +|.
T Consensus       173 g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~-~Ga  220 (355)
T cd08230         173 PRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEE-LGA  220 (355)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH-cCC
Confidence            46899999863 55666666667789999986   7888888876 553

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=85.02  E-value=20  Score=36.07  Aligned_cols=44  Identities=14%  Similarity=0.231  Sum_probs=33.4

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL  307 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~  307 (478)
                      ..+|||.|.+  .|.++..+.+..+.+|.++.-+++-.+.+++ +|.
T Consensus       139 g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~-lGa  184 (325)
T TIGR02825       139 GETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK-LGF  184 (325)
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCC
Confidence            4689999953  4555555666668899999999999999976 564

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=84.99  E-value=6.4  Score=39.32  Aligned_cols=38  Identities=24%  Similarity=0.290  Sum_probs=28.1

Q ss_pred             eEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHH
Q 038592          265 KALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQ  303 (478)
Q Consensus       265 ~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~  303 (478)
                      +|+|||+|  |+.++..|.+. +.+|+.++-+++-++..++
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~-g~~V~~~~r~~~~~~~~~~   41 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQA-GHDVTLVARRGAHLDALNE   41 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCeEEEEECChHHHHHHHH
Confidence            69999998  45566666643 5789999998877766554

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=84.90  E-value=12  Score=37.42  Aligned_cols=39  Identities=15%  Similarity=0.198  Sum_probs=29.3

Q ss_pred             CeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHH
Q 038592          264 PKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQ  303 (478)
Q Consensus       264 ~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~  303 (478)
                      .+|.+||+|  |+.++..+.+ .+.+|.+++.++..++.+.+
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~-~g~~v~~~d~~~~~~~~~~~   43 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLK-AGYSLVVYDRNPEAVAEVIA   43 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHH-CCCeEEEEcCCHHHHHHHHH
Confidence            379999999  3456666654 36789999999988776544

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=84.89  E-value=1.9  Score=43.86  Aligned_cols=98  Identities=12%  Similarity=0.095  Sum_probs=58.4

Q ss_pred             CeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          264 PKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       264 ~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      .+|+|+|+|  ||.++-+|.+. +.+|+.|.-.++-++.-++--|      +++. .++..+.-...        ..   
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~-G~~V~lv~r~~~~~~~i~~~~G------l~i~-~~g~~~~~~~~--------~~---   63 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARA-GLPVRLILRDRQRLAAYQQAGG------LTLV-EQGQASLYAIP--------AE---   63 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhC-CCCeEEEEechHHHHHHhhcCC------eEEe-eCCcceeeccC--------CC---
Confidence            489999999  56677777654 6789999988655554443222      2222 12211100000        00   


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                 .......||+||+-+-             .+...+.++.++..+.++..++.
T Consensus        64 -----------~~~~~~~~D~viv~vK-------------~~~~~~al~~l~~~l~~~t~vv~  102 (305)
T PRK05708         64 -----------TADAAEPIHRLLLACK-------------AYDAEPAVASLAHRLAPGAELLL  102 (305)
T ss_pred             -----------CcccccccCEEEEECC-------------HHhHHHHHHHHHhhCCCCCEEEE
Confidence                       0012357999999432             23457889999999999886653

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=84.87  E-value=10  Score=38.56  Aligned_cols=96  Identities=18%  Similarity=0.257  Sum_probs=58.5

Q ss_pred             CCeEEEEeCc-hhHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVG-GGALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlG-gG~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+|||.|.| .|.++..+.+..+. .|.+++.+++-.+++++ +|.  +.-+.....|..+-+.+..            
T Consensus       167 g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~-~g~--~~~v~~~~~~~~~~i~~~~------------  231 (351)
T cd08285         167 GDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE-YGA--TDIVDYKNGDVVEQILKLT------------  231 (351)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-cCC--ceEecCCCCCHHHHHHHHh------------
Confidence            4689999755 23344445555666 69999999999999986 564  2111211223333333311            


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                     ....+|+|+--+  +              ....+..+.+.|+++|.++.
T Consensus       232 ---------------~~~~~d~vld~~--g--------------~~~~~~~~~~~l~~~G~~v~  264 (351)
T cd08285         232 ---------------GGKGVDAVIIAG--G--------------GQDTFEQALKVLKPGGTISN  264 (351)
T ss_pred             ---------------CCCCCcEEEECC--C--------------CHHHHHHHHHHhhcCCEEEE
Confidence                           234589887511  1              13467788889999998874

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=84.68  E-value=18  Score=36.67  Aligned_cols=108  Identities=15%  Similarity=0.078  Sum_probs=64.1

Q ss_pred             eEEEEeCch--hHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          265 KALCVGVGG--GALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       265 ~VLvIGlGg--G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      +|.+||+|.  ..++.-|.+. +.+|.+++.+++.++.+.+ .|.      + ...+..+.++.                
T Consensus         2 ~Ig~IGlG~MG~~mA~~L~~~-g~~v~v~dr~~~~~~~~~~-~g~------~-~~~~~~e~~~~----------------   56 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRLLRG-GHEVVGYDRNPEAVEALAE-EGA------T-GADSLEELVAK----------------   56 (301)
T ss_pred             EEEEEcccHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHH-CCC------e-ecCCHHHHHhh----------------
Confidence            689999993  4466656543 6799999999988877654 232      1 12233344322                


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHHH
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEFR  422 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l~  422 (478)
                                    ....|+|++=+.+           .. ...+.+..+...|+++ -+++++.+.++.....+.+.++
T Consensus        57 --------------~~~~dvvi~~v~~-----------~~-~~~~v~~~l~~~l~~g-~ivid~st~~~~~~~~~~~~~~  109 (301)
T PRK09599         57 --------------LPAPRVVWLMVPA-----------GE-ITDATIDELAPLLSPG-DIVIDGGNSYYKDDIRRAELLA  109 (301)
T ss_pred             --------------cCCCCEEEEEecC-----------Cc-HHHHHHHHHHhhCCCC-CEEEeCCCCChhHHHHHHHHHH
Confidence                          1125888884322           11 2355667777788775 5666776655544444555555


Q ss_pred             Hh
Q 038592          423 DV  424 (478)
Q Consensus       423 ~v  424 (478)
                      +.
T Consensus       110 ~~  111 (301)
T PRK09599        110 EK  111 (301)
T ss_pred             Hc
Confidence            44

>PRK06545 prephenate dehydrogenase; Validated

Probab=84.59  E-value=5.7  Score=41.43  Aligned_cols=97  Identities=24%  Similarity=0.347  Sum_probs=57.3

Q ss_pred             eEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHh-cCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          265 KALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQY-FGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       265 ~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~-Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      +|.+||+|  ||+++..|.+. +..+.+++.|+.-.+.++.. ++...+     ...|    +++               
T Consensus         2 ~I~iIG~GliG~siA~~L~~~-G~~v~i~~~~~~~~~~~~a~~~~~~~~-----~~~~----~~~---------------   56 (359)
T PRK06545          2 TVLIVGLGLIGGSLALAIKAA-GPDVFIIGYDPSAAQLARALGFGVIDE-----LAAD----LQR---------------   56 (359)
T ss_pred             eEEEEEeCHHHHHHHHHHHhc-CCCeEEEEeCCCHHHHHHHhcCCCCcc-----cccC----HHH---------------
Confidence            79999999  78888888765 44666677776655554321 221110     0111    111               


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHH-ccCcCcEEEEEeCCCCchHH
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARL-ILSDFGIFVMNVIPPNRSFY  414 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~-~L~~~Gilv~N~~~~~~~~~  414 (478)
                                    .-...|+||+-+           ||.  ...++++.+.. .++++ .+++++.+-.....
T Consensus        57 --------------~~~~aDlVilav-----------P~~--~~~~vl~~l~~~~l~~~-~ivtDv~SvK~~i~  102 (359)
T PRK06545         57 --------------AAAEADLIVLAV-----------PVD--ATAALLAELADLELKPG-VIVTDVGSVKGAIL  102 (359)
T ss_pred             --------------HhcCCCEEEEeC-----------CHH--HHHHHHHHHhhcCCCCC-cEEEeCccccHHHH
Confidence                          123479999932           333  34678888887 47765 67777776654433

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=84.36  E-value=15  Score=39.00  Aligned_cols=37  Identities=32%  Similarity=0.544  Sum_probs=27.5

Q ss_pred             eEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHH
Q 038592          265 KALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVAR  302 (478)
Q Consensus       265 ~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~  302 (478)
                      +|.+||+|  |..++..|.+ .+.+|+++|.|+..++...
T Consensus         2 kI~vIGlG~~G~~lA~~La~-~G~~V~~~d~~~~~v~~l~   40 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLAD-LGHEVTGVDIDQEKVDKLN   40 (411)
T ss_pred             EEEEECCCchhHHHHHHHHh-cCCeEEEEECCHHHHHHhh
Confidence            68999999  3445555543 3679999999999887644

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=84.16  E-value=6.4  Score=33.52  Aligned_cols=55  Identities=24%  Similarity=0.269  Sum_probs=37.7

Q ss_pred             eEEEEeCchhH--HHHHHHhh-CCCEEE-EEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHH
Q 038592          265 KALCVGVGGGA--LVSFLRTQ-LDFEVV-GVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEK  326 (478)
Q Consensus       265 ~VLvIGlGgG~--L~~~L~~~-~~~~V~-~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~  326 (478)
                      ||.+||+|..+  ....+.+. .+.+++ ++|.+++-.+.+.+.++.+       ...|..+.+..
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~-------~~~~~~~ll~~   60 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIP-------VYTDLEELLAD   60 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSE-------EESSHHHHHHH
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhccc-------chhHHHHHHHh
Confidence            79999998653  22223333 456765 6899999988877777753       67777777643

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=83.98  E-value=4.5  Score=45.55  Aligned_cols=53  Identities=23%  Similarity=0.456  Sum_probs=41.6

Q ss_pred             CCeEEEEeCc-hh-HHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHH
Q 038592          263 RPKALCVGVG-GG-ALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEF  323 (478)
Q Consensus       263 ~~~VLvIGlG-gG-~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~  323 (478)
                      ..+|+|+|.| -| .+++.|.+. +.+++++|.|++.++.++++ |      .+++.||+.+-
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~-g~~vvvID~d~~~v~~~~~~-g------~~v~~GDat~~  454 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSS-GVKMTVLDHDPDHIETLRKF-G------MKVFYGDATRM  454 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHhc-C------CeEEEEeCCCH
Confidence            4689999999 34 366666653 67999999999999999873 4      57999999874

>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=83.68  E-value=3.2  Score=40.88  Aligned_cols=59  Identities=19%  Similarity=0.213  Sum_probs=46.6

Q ss_pred             CeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHH
Q 038592          264 PKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEF  323 (478)
Q Consensus       264 ~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~  323 (478)
                      .=|..||-|-|++.+.+.+.--.++.+||+|+..+.-- +++.-..+.++.+|++|++.|
T Consensus        52 ~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~L-Q~L~EAa~~~~~IHh~D~LR~  110 (326)
T KOG0821|consen   52 AYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGL-QMLSEAAPGKLRIHHGDVLRF  110 (326)
T ss_pred             ceeEEecCCCCchhHHHHhcchhheeeeeeccccChHH-HHHhhcCCcceEEecccccee
Confidence            45889999999999988876446999999999876654 333323456999999999998

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=83.62  E-value=11  Score=37.70  Aligned_cols=38  Identities=13%  Similarity=0.112  Sum_probs=27.9

Q ss_pred             eEEEEeCch--hHHHHHHHhhCCCEEEEEECChHHHHHHHH
Q 038592          265 KALCVGVGG--GALVSFLRTQLDFEVVGVEMDEVVLRVARQ  303 (478)
Q Consensus       265 ~VLvIGlGg--G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~  303 (478)
                      +|.+||+|.  ..++..|.+. +.+|++++.+++.++.+.+
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~-G~~V~~~dr~~~~~~~~~~   40 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKA-GYQLHVTTIGPEVADELLA   40 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHC-CCeEEEEcCCHHHHHHHHH
Confidence            478999983  4466555543 6799999999988777654

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=83.59  E-value=9.4  Score=38.98  Aligned_cols=38  Identities=18%  Similarity=0.219  Sum_probs=28.2

Q ss_pred             eEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHH
Q 038592          265 KALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQ  303 (478)
Q Consensus       265 ~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~  303 (478)
                      +|.|||.|  |++++..|.+. +.+|+.+..+++.++.-++
T Consensus         2 kI~IiGaGa~G~ala~~L~~~-g~~V~l~~r~~~~~~~i~~   41 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSK-KISVNLWGRNHTTFESINT   41 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHC-CCeEEEEecCHHHHHHHHH
Confidence            68999999  45577666653 5789999999887765544

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=83.35  E-value=4.5  Score=41.13  Aligned_cols=124  Identities=17%  Similarity=0.140  Sum_probs=70.4

Q ss_pred             CCeEEEEeCchh-HHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGG-ALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG-~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      .++|+++|=-.= +++..|.. ++-+|.+||||+.+++.-.+.-.-..-.+++.++=|-+.-+.+-              
T Consensus       153 gK~I~vvGDDDLtsia~aLt~-mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~--------------  217 (354)
T COG1568         153 GKEIFVVGDDDLTSIALALTG-MPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPED--------------  217 (354)
T ss_pred             CCeEEEEcCchhhHHHHHhcC-CCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHH--------------
Confidence            578999994321 23433332 35799999999999986554321111234667777776654331              


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCCh-HHHHHHHHHccCcC---cEEEEEeCCCCchHHHHH
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVR-KDVLLAARLILSDF---GIFVMNVIPPNRSFYDML  417 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~-~efl~~~~~~L~~~---Gilv~N~~~~~~~~~~~v  417 (478)
                                    -..+||+++.|            ||+.+.- .-|+..=-..|+.-   |.|-+...-.+-.-..++
T Consensus       218 --------------~~~kFDvfiTD------------PpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~ei  271 (354)
T COG1568         218 --------------LKRKFDVFITD------------PPETIKALKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREI  271 (354)
T ss_pred             --------------HHhhCCeeecC------------chhhHHHHHHHHhccHHHhcCCCccceEeeeeccccHHHHHHH
Confidence                          35689999996            3443221 44555555667654   666554433333333444


Q ss_pred             HHHHHHhcCc
Q 038592          418 IQEFRDVFQE  427 (478)
Q Consensus       418 ~~~l~~vF~~  427 (478)
                      .+.|-.-|..
T Consensus       272 Qr~lIn~~gv  281 (354)
T COG1568         272 QRILINEMGV  281 (354)
T ss_pred             HHHHHHhcCe
Confidence            4445555543

>PRK08507 prephenate dehydrogenase; Validated

Probab=83.27  E-value=8.9  Score=38.24  Aligned_cols=39  Identities=31%  Similarity=0.391  Sum_probs=31.4

Q ss_pred             eEEEEeCc--hhHHHHHHHhhC-CCEEEEEECChHHHHHHHH
Q 038592          265 KALCVGVG--GGALVSFLRTQL-DFEVVGVEMDEVVLRVARQ  303 (478)
Q Consensus       265 ~VLvIGlG--gG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~  303 (478)
                      +|.+||+|  ||+++..|.+.- ..+|.+++.+++-++.+++
T Consensus         2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~   43 (275)
T PRK08507          2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALE   43 (275)
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH
Confidence            68999999  677888877652 4589999999998887764

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=83.21  E-value=6.3  Score=39.15  Aligned_cols=98  Identities=24%  Similarity=0.274  Sum_probs=70.7

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      .+.+|.||.-+|+.+.++.+.-..+|.+||.--.-+.+     .+..|+|+.++..-=+.++...               
T Consensus        80 ~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~-----kLR~d~rV~~~E~tN~r~l~~~---------------  139 (245)
T COG1189          80 GKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHW-----KLRNDPRVIVLERTNVRYLTPE---------------  139 (245)
T ss_pred             CCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCH-----hHhcCCcEEEEecCChhhCCHH---------------
Confidence            57899999999999998888756799999976544333     3446899998887777776431               


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCC-hHHHHHHHHHccCcCcEEEEEe
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFV-RKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~-~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                  .-.+..|+|++|+.              |. -...|-.+...|+++|.++.=+
T Consensus       140 ------------~~~~~~d~~v~DvS--------------FISL~~iLp~l~~l~~~~~~~v~Lv  178 (245)
T COG1189         140 ------------DFTEKPDLIVIDVS--------------FISLKLILPALLLLLKDGGDLVLLV  178 (245)
T ss_pred             ------------HcccCCCeEEEEee--------------hhhHHHHHHHHHHhcCCCceEEEEe
Confidence                        12337899999862              11 2557777888888887776544

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=83.18  E-value=6.2  Score=40.06  Aligned_cols=39  Identities=13%  Similarity=0.106  Sum_probs=27.4

Q ss_pred             CCeEEEEeCch--hHHHHHHHhhCCCEEEEEECChHHHHHHH
Q 038592          263 RPKALCVGVGG--GALVSFLRTQLDFEVVGVEMDEVVLRVAR  302 (478)
Q Consensus       263 ~~~VLvIGlGg--G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~  302 (478)
                      .++++|+|.|.  ..+++.|+ .++.+|++++.++.-.+.+.
T Consensus       151 gk~v~IiG~G~iG~avA~~L~-~~G~~V~v~~R~~~~~~~~~  191 (287)
T TIGR02853       151 GSNVMVLGFGRTGMTIARTFS-ALGARVFVGARSSADLARIT  191 (287)
T ss_pred             CCEEEEEcChHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHH
Confidence            57999999994  23444444 34789999999987554443

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=83.12  E-value=1.7  Score=44.47  Aligned_cols=56  Identities=14%  Similarity=0.200  Sum_probs=36.5

Q ss_pred             CCeEEEEeCchhH-HHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC--CCCCeEEEEc
Q 038592          263 RPKALCVGVGGGA-LVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE--DGEFLQVSVG  318 (478)
Q Consensus       263 ~~~VLvIGlGgG~-L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~--~d~rl~v~v~  318 (478)
                      ..++|.||.|+.+ .|....+.++.++++.|||+.-++.|++.....  -.++++++..
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~  161 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQ  161 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE-
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEc
Confidence            5689999999775 354444445899999999999999999876432  2568888755

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=83.08  E-value=15  Score=35.07  Aligned_cols=42  Identities=24%  Similarity=0.393  Sum_probs=32.2

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCCEEEEEECChHHHHHHHHh
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDFEVVGVEMDEVVLRVARQY  304 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~  304 (478)
                      ..+|||.|.|+ |.....+.+..+.+|.+++.++.-.+.+++.
T Consensus       135 ~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~  177 (271)
T cd05188         135 GDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL  177 (271)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh
Confidence            56899999886 4444445555578999999999988888664

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PLN02712 arogenate dehydrogenase

Probab=82.87  E-value=12  Score=42.56  Aligned_cols=105  Identities=18%  Similarity=0.221  Sum_probs=65.2

Q ss_pred             CCCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          262 FRPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       262 ~~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      .+.+|.+||+|  ||.+++.|.+ .+.+|.+++.++.. +.|++ +|.      . ...|.-+.+.              
T Consensus       368 ~~~kIgIIGlG~mG~slA~~L~~-~G~~V~~~dr~~~~-~~a~~-~Gv------~-~~~~~~el~~--------------  423 (667)
T PLN02712        368 SKLKIAIVGFGNFGQFLAKTMVK-QGHTVLAYSRSDYS-DEAQK-LGV------S-YFSDADDLCE--------------  423 (667)
T ss_pred             CCCEEEEEecCHHHHHHHHHHHH-CcCEEEEEECChHH-HHHHH-cCC------e-EeCCHHHHHh--------------
Confidence            35799999999  6778887765 35789999998764 44543 342      1 2334443321              


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHH-ccCcCcEEEEEeCCCCchHHHHHH
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARL-ILSDFGIFVMNVIPPNRSFYDMLI  418 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~-~L~~~Gilv~N~~~~~~~~~~~v~  418 (478)
                                        ...|+||+-+           ||.  ...+++..+.. .+++ |.+++++.+-...    .+
T Consensus       424 ------------------~~aDvVILav-----------P~~--~~~~vi~~l~~~~lk~-g~ivvDv~SvK~~----~~  467 (667)
T PLN02712        424 ------------------EHPEVILLCT-----------SIL--STEKVLKSLPFQRLKR-STLFVDVLSVKEF----PR  467 (667)
T ss_pred             ------------------cCCCEEEECC-----------ChH--HHHHHHHHHHHhcCCC-CcEEEECCCccHH----HH
Confidence                              1369999932           222  45677777764 4665 5677788776432    34


Q ss_pred             HHHHHhcC
Q 038592          419 QEFRDVFQ  426 (478)
Q Consensus       419 ~~l~~vF~  426 (478)
                      +.+.+.++
T Consensus       468 ~~~~~~l~  475 (667)
T PLN02712        468 NLFLQHLP  475 (667)
T ss_pred             HHHHHhcc
Confidence            45555554

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=82.87  E-value=17  Score=37.52  Aligned_cols=98  Identities=21%  Similarity=0.205  Sum_probs=61.4

Q ss_pred             CCeEEEEeCch--hHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGG--GALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGg--G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+|||.|..|  |.++..|.+..+..+.++=-.++-.+.+++...   +.-+...-.|-.+-+++..            
T Consensus       143 g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGA---d~vi~y~~~~~~~~v~~~t------------  207 (326)
T COG0604         143 GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGA---DHVINYREEDFVEQVRELT------------  207 (326)
T ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCC---CEEEcCCcccHHHHHHHHc------------
Confidence            57899999554  567777777777555555555555557777643   2223333445444444421            


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeC
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVI  407 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~  407 (478)
                                     .+..+|+|+--                 ...+.+......|+++|.++.--.
T Consensus       208 ---------------~g~gvDvv~D~-----------------vG~~~~~~~l~~l~~~G~lv~ig~  242 (326)
T COG0604         208 ---------------GGKGVDVVLDT-----------------VGGDTFAASLAALAPGGRLVSIGA  242 (326)
T ss_pred             ---------------CCCCceEEEEC-----------------CCHHHHHHHHHHhccCCEEEEEec
Confidence                           34569998861                 225677778899999999987443

>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein

Probab=82.61  E-value=3  Score=41.91  Aligned_cols=124  Identities=23%  Similarity=0.303  Sum_probs=62.4

Q ss_pred             CCeEEEEeCch--hHHH--HHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCC
Q 038592          263 RPKALCVGVGG--GALV--SFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNP  336 (478)
Q Consensus       263 ~~~VLvIGlGg--G~L~--~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~  336 (478)
                      ..|||-+|.|+  |..|  ..|++.+  +.-++-.||.+-|-+            --..+++|-..|.            
T Consensus        62 nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~vSD------------a~~~~~~Dc~t~~------------  117 (299)
T PF06460_consen   62 NMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYVSD------------ADQSIVGDCRTYM------------  117 (299)
T ss_dssp             T-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-S------------SSEEEES-GGGEE------------
T ss_pred             CcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhccc------------cCCceeccccccC------------
Confidence            46899999984  4333  3466665  356666676543221            2356778877773            


Q ss_pred             CCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCC--CCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHH
Q 038592          337 DSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARN--GTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFY  414 (478)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~--g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~  414 (478)
                                         ...++|+||.|++++....  |-+.-.+.|+ .-+..-+++.|+-||-+++-+.-.+-   
T Consensus       118 -------------------~~~k~DlIiSDmYd~~~k~~~~~n~~~~~fF-~yl~~~i~~kLaLGGSvaiKiTE~Sw---  174 (299)
T PF06460_consen  118 -------------------PPDKFDLIISDMYDGRTKNCDGENNSKEGFF-TYLCGFIKEKLALGGSVAIKITEHSW---  174 (299)
T ss_dssp             -------------------ESS-EEEEEE----TTS-SS-S------THH-HHHHHHHHHHEEEEEEEEEEE-SSS----
T ss_pred             -------------------CCCcccEEEEecccccccccccccCCccccH-HHHHHHHHhhhhcCceEEEEeecccc---
Confidence                               5788999999999654321  1111123332 33456678899999999987743321   


Q ss_pred             HHHHHHHHHhcCc--cEEEee
Q 038592          415 DMLIQEFRDVFQE--LYEIDV  433 (478)
Q Consensus       415 ~~v~~~l~~vF~~--v~~~~v  433 (478)
                      ..-+-.|.+.|..  ++...+
T Consensus       175 ~~~Lyel~~~F~~wt~FcT~V  195 (299)
T PF06460_consen  175 NAQLYELMGYFSWWTCFCTAV  195 (299)
T ss_dssp             -HHHHHHHTTEEEEEEEEEGG
T ss_pred             cHHHHHHHhhcccEEEEeccc
Confidence            1224567788885  344444

This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=82.56  E-value=5.1  Score=40.14  Aligned_cols=37  Identities=22%  Similarity=0.247  Sum_probs=26.6

Q ss_pred             eEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHH
Q 038592          265 KALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQ  303 (478)
Q Consensus       265 ~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~  303 (478)
                      +|+|||+|  |+.++..|.+. +.+|+.++. ++.++..++
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~-g~~V~~~~r-~~~~~~~~~   40 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEA-GRDVTFLVR-PKRAKALRE   40 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHC-CCceEEEec-HHHHHHHHh
Confidence            69999999  44466666654 578999998 666665554

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=82.48  E-value=7  Score=39.51  Aligned_cols=40  Identities=20%  Similarity=0.313  Sum_probs=32.2

Q ss_pred             CeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHh
Q 038592          264 PKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQY  304 (478)
Q Consensus       264 ~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~  304 (478)
                      .+|.|||+|  |+.++..+... +.+|+.+|.+|+-++.+++.
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~~~~~~~~~~   47 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARA-GVDVLVFETTEELATAGRNR   47 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHH
Confidence            589999999  56666655543 78999999999999987654

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=82.44  E-value=4.9  Score=44.14  Aligned_cols=42  Identities=14%  Similarity=0.188  Sum_probs=32.9

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhc
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYF  305 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~F  305 (478)
                      -++|.+||+|  |+.++..+... +..|+++|.+++.++.++++.
T Consensus         7 i~~V~VIGaG~MG~gIA~~la~a-G~~V~l~D~~~e~l~~~~~~i   50 (507)
T PRK08268          7 IATVAVIGAGAMGAGIAQVAAQA-GHTVLLYDARAGAAAAARDGI   50 (507)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHH
Confidence            3689999999  55666665543 789999999999999876543

>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]

Probab=82.36  E-value=14  Score=36.99  Aligned_cols=140  Identities=16%  Similarity=0.199  Sum_probs=92.1

Q ss_pred             CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEE
Q 038592          285 DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIM  364 (478)
Q Consensus       285 ~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi  364 (478)
                      +-++...|+-|.=..+-++.|.  .+.+++|+.+||..-+....                          .+..+=-+|+
T Consensus       110 qDRl~l~ELHp~D~~~L~~~f~--~d~~vrv~~~DG~~~l~a~L--------------------------PP~erRglVL  161 (279)
T COG2961         110 QDRLVLTELHPSDAPLLRNNFA--GDRRVRVLRGDGFLALKAHL--------------------------PPKERRGLVL  161 (279)
T ss_pred             hceeeeeecCccHHHHHHHHhC--CCcceEEEecCcHHHHhhhC--------------------------CCCCcceEEE
Confidence            5699999999999999888887  68899999999999886632                          1455667899


Q ss_pred             EeCCCCCCCCCCCCCCCCCCh--HHHHHHHHHccC--cCcEEEEEeCCCCchHHHHHHHHHHHh-cCccEEE--eec--c
Q 038592          365 VDLDSGDARNGTSAPPVEFVR--KDVLLAARLILS--DFGIFVMNVIPPNRSFYDMLIQEFRDV-FQELYEI--DVG--N  435 (478)
Q Consensus       365 vDv~s~d~~~g~s~Pp~~f~~--~efl~~~~~~L~--~~Gilv~N~~~~~~~~~~~v~~~l~~v-F~~v~~~--~v~--~  435 (478)
                      +|            ||-+.-+  ....+.+++.++  ++|+.+++...-+....+.+.+.|++. .+.+..+  .+.  .
T Consensus       162 ID------------PPfE~~~eY~rvv~~l~~~~kRf~~g~yaiWYPik~r~~~~~f~~~L~~~~i~kiL~iEL~VrP~~  229 (279)
T COG2961         162 ID------------PPFELKDEYQRVVEALAEAYKRFATGTYAIWYPIKDRRQIRRFLRALEALGIRKILQIELAVRPDS  229 (279)
T ss_pred             eC------------CCcccccHHHHHHHHHHHHHHhhcCceEEEEEeecchHHHHHHHHHHhhcCccceeeeEEEecCCC
Confidence            97            3443322  223444444444  479999988877777788888888877 4454333  221  1


Q ss_pred             ------cceEEEEEEcCCCCCCcchhhhhhhHHHHHHhc
Q 038592          436 ------EENFVLIATGLSIVSSGSDCENAFGKKLRLLIS  468 (478)
Q Consensus       436 ------~~N~Vl~a~~~~~~~~~~~~~~~~~~~l~~~i~  468 (478)
                            ..-+|++  +-|.  +..+..+..++.|...+.
T Consensus       230 d~~gm~gSGMivI--NPPw--tle~ql~~~LP~L~~~L~  264 (279)
T COG2961         230 DPRGMNGSGMIVI--NPPW--TLEQQLRAALPWLTTLLA  264 (279)
T ss_pred             CCCCccceeEEEE--CCCc--cHHHHHHHHHHHHHHHhc
Confidence                  1123333  3333  344556666777766554

>PF14314 Methyltrans_Mon: Virus-capping methyltransferase

Probab=82.29  E-value=3.7  Score=46.45  Aligned_cols=72  Identities=11%  Similarity=0.156  Sum_probs=49.0

Q ss_pred             CCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCC-CCchHHHHHHHHHHHhcCccEEEee
Q 038592          356 VDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIP-PNRSFYDMLIQEFRDVFQELYEIDV  433 (478)
Q Consensus       356 ~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~-~~~~~~~~v~~~l~~vF~~v~~~~v  433 (478)
                      .+-++|+|++|+...|...      ..-.+...-+.+..+|.++|.+++=... +=...-..++..+...|+.|..+..
T Consensus       412 ~~~~idLiv~DmEV~d~~~------~~kIe~~l~~~~~~ll~~~gtLIfKTYlt~l~~~~~~il~~lg~~F~~V~l~qT  484 (675)
T PF14314_consen  412 HNLSIDLIVMDMEVRDDSI------IRKIEDNLRDYVHSLLEEPGTLIFKTYLTRLLSPDYNILDLLGRYFKSVELVQT  484 (675)
T ss_pred             cCCcccEEEEeceecChHH------HHHHHHHHHHHHHHhcCCCcEEEEehhHhhhhcchhhHHHHHHhhcCceEEEEC
Confidence            5778999999987665421      1113344445566788999999985533 2122234689999999999987774

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=81.96  E-value=4.3  Score=39.25  Aligned_cols=102  Identities=23%  Similarity=0.258  Sum_probs=63.8

Q ss_pred             CCCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          262 FRPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       262 ~~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..++||.+|.|.|..+......-...|...|+||-.+...+-.-.. +.-.+.+...|.+-                   
T Consensus        79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~a-ngv~i~~~~~d~~g-------------------  138 (218)
T COG3897          79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAA-NGVSILFTHADLIG-------------------  138 (218)
T ss_pred             ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhh-ccceeEEeeccccC-------------------
Confidence            4689999999999877554443346999999998888776543221 22234444444431                   


Q ss_pred             ccccCCCccCCCCCCCCceeEEEE-eCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMV-DLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPN  410 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIiv-Dv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~  410 (478)
                                    ....+|+|+. |++=.        .+    ..+-+-.++..|...|..++ +..+.
T Consensus       139 --------------~~~~~Dl~LagDlfy~--------~~----~a~~l~~~~~~l~~~g~~vl-vgdp~  181 (218)
T COG3897         139 --------------SPPAFDLLLAGDLFYN--------HT----EADRLIPWKDRLAEAGAAVL-VGDPG  181 (218)
T ss_pred             --------------CCcceeEEEeeceecC--------ch----HHHHHHHHHHHHHhCCCEEE-EeCCC
Confidence                          3567999998 33211        11    12233347888888888877 54443

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=81.92  E-value=19  Score=34.68  Aligned_cols=50  Identities=18%  Similarity=0.089  Sum_probs=31.5

Q ss_pred             CCeEEEEeCchhHHH--HHHHhhCCCEEEEEE--CChHHHHHHHHhcCCCCCCCeEEEEchH
Q 038592          263 RPKALCVGVGGGALV--SFLRTQLDFEVVGVE--MDEVVLRVARQYFGLEDGEFLQVSVGDA  320 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~--~~L~~~~~~~V~~VE--iDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg  320 (478)
                      .++|||||+|.=+..  +.|.+ .+.+|++|+  +++++.+++++       .+++++.++.
T Consensus         9 gk~vlVvGgG~va~rk~~~Ll~-~ga~VtVvsp~~~~~l~~l~~~-------~~i~~~~~~~   62 (205)
T TIGR01470         9 GRAVLVVGGGDVALRKARLLLK-AGAQLRVIAEELESELTLLAEQ-------GGITWLARCF   62 (205)
T ss_pred             CCeEEEECcCHHHHHHHHHHHH-CCCEEEEEcCCCCHHHHHHHHc-------CCEEEEeCCC
Confidence            469999999954433  34443 367888885  45566666533       2566666553

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=81.87  E-value=16  Score=37.62  Aligned_cols=45  Identities=18%  Similarity=0.193  Sum_probs=34.9

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL  307 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~  307 (478)
                      ..+|||.|.+  .|.++..+.+..+.+|.+++.+++-.+.+++-+|.
T Consensus       159 g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa  205 (348)
T PLN03154        159 GDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGF  205 (348)
T ss_pred             CCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCC
Confidence            4689999973  45566666667788999999999989988755674

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=81.87  E-value=7.6  Score=39.19  Aligned_cols=42  Identities=24%  Similarity=0.094  Sum_probs=30.3

Q ss_pred             CCeEEEEeCc-hhHHHHHHHhhCCCE-EEEEECChHHHHHHHHh
Q 038592          263 RPKALCVGVG-GGALVSFLRTQLDFE-VVGVEMDEVVLRVARQY  304 (478)
Q Consensus       263 ~~~VLvIGlG-gG~L~~~L~~~~~~~-V~~VEiDp~Vl~vA~~~  304 (478)
                      ..+|||+|+| -|.++..+.+..+.+ |.+++.+++-++.|+.+
T Consensus       145 ~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~  188 (308)
T TIGR01202       145 VLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY  188 (308)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc
Confidence            4589999876 355666666666764 77889998888777653

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=81.81  E-value=7.5  Score=38.62  Aligned_cols=100  Identities=23%  Similarity=0.265  Sum_probs=59.6

Q ss_pred             HHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCC
Q 038592          276 LVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSD  354 (478)
Q Consensus       276 L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (478)
                      +++.|++.. ..+|.++|.++..++.|++. |...     -...+ .+.+                              
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~-g~~~-----~~~~~-~~~~------------------------------   43 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAALEL-GIID-----EASTD-IEAV------------------------------   43 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHHHT-TSSS-----EEESH-HHHG------------------------------
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHHHC-CCee-----eccCC-HhHh------------------------------
Confidence            456777774 68999999999999999764 5421     11223 3332                              


Q ss_pred             CCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHHHHhcC----ccEE
Q 038592          355 RVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEFRDVFQ----ELYE  430 (478)
Q Consensus       355 ~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l~~vF~----~v~~  430 (478)
                         ..+|+||+-+            |.. ...++++.+...|+++. +++.+.+-.....    +.+++..+    .+-.
T Consensus        44 ---~~~Dlvvlav------------P~~-~~~~~l~~~~~~~~~~~-iv~Dv~SvK~~~~----~~~~~~~~~~~~~v~~  102 (258)
T PF02153_consen   44 ---EDADLVVLAV------------PVS-AIEDVLEEIAPYLKPGA-IVTDVGSVKAPIV----EAMERLLPEGVRFVGG  102 (258)
T ss_dssp             ---GCCSEEEE-S-------------HH-HHHHHHHHHHCGS-TTS-EEEE--S-CHHHH----HHHHHHHTSSGEEEEE
T ss_pred             ---cCCCEEEEcC------------CHH-HHHHHHHHhhhhcCCCc-EEEEeCCCCHHHH----HHHHHhcCcccceeec
Confidence               2369999932            332 46889999999888764 5567776655544    44444444    4555


Q ss_pred             Eee
Q 038592          431 IDV  433 (478)
Q Consensus       431 ~~v  433 (478)
                      .|+
T Consensus       103 HPM  105 (258)
T PF02153_consen  103 HPM  105 (258)
T ss_dssp             EES
T ss_pred             CCC
Confidence            665

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=81.64  E-value=7.9  Score=41.10  Aligned_cols=54  Identities=22%  Similarity=0.243  Sum_probs=39.2

Q ss_pred             CCeEEEEeCch-h-HHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHH
Q 038592          263 RPKALCVGVGG-G-ALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIE  322 (478)
Q Consensus       263 ~~~VLvIGlGg-G-~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~  322 (478)
                      +.+++|+|+|. | .+++.|.+ .+.+|++||.||+.++.+++.+     +.+.++.+|+.+
T Consensus       231 ~~~iiIiG~G~~g~~l~~~L~~-~~~~v~vid~~~~~~~~~~~~~-----~~~~~i~gd~~~  286 (453)
T PRK09496        231 VKRVMIVGGGNIGYYLAKLLEK-EGYSVKLIERDPERAEELAEEL-----PNTLVLHGDGTD  286 (453)
T ss_pred             CCEEEEECCCHHHHHHHHHHHh-CCCeEEEEECCHHHHHHHHHHC-----CCCeEEECCCCC
Confidence            57899999973 2 34454443 3679999999999888776643     235788999854

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=81.39  E-value=21  Score=36.07  Aligned_cols=96  Identities=20%  Similarity=0.256  Sum_probs=56.8

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCC-CEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLD-FEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+|||.|.|+ |..+..+.+..+ .+|.+++.++.-.+.++++ |.  +.-+.....+....+.+..            
T Consensus       167 g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-g~--~~~v~~~~~~~~~~i~~~~------------  231 (345)
T cd08286         167 GDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKL-GA--THTVNSAKGDAIEQVLELT------------  231 (345)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-CC--CceeccccccHHHHHHHHh------------
Confidence            46888876431 223333445567 7899999999988888764 53  2222222234333333321            


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                     ....+|+|+ |...               ....++.+.+.|+++|.++.
T Consensus       232 ---------------~~~~~d~vl-d~~g---------------~~~~~~~~~~~l~~~g~~v~  264 (345)
T cd08286         232 ---------------DGRGVDVVI-EAVG---------------IPATFELCQELVAPGGHIAN  264 (345)
T ss_pred             ---------------CCCCCCEEE-ECCC---------------CHHHHHHHHHhccCCcEEEE
Confidence                           234599887 3211               13356777889999999874

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=81.32  E-value=16  Score=39.83  Aligned_cols=101  Identities=8%  Similarity=-0.026  Sum_probs=61.3

Q ss_pred             eEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          265 KALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       265 ~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      +|.+||+|  |+.++.-|.+. +.+|++.+.+++.++...+...- ....++ ...|..++++.                
T Consensus         3 ~IgvIGLG~MG~~lA~nL~~~-G~~V~v~dr~~~~~~~l~~~~~~-~g~~i~-~~~s~~e~v~~----------------   63 (470)
T PTZ00142          3 DIGLIGLAVMGQNLALNIASR-GFKISVYNRTYEKTEEFVKKAKE-GNTRVK-GYHTLEELVNS----------------   63 (470)
T ss_pred             EEEEEeEhHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHhhhh-cCCcce-ecCCHHHHHhc----------------
Confidence            79999999  45566666654 67999999999998766543110 011111 23344455432                


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCc
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNR  411 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~  411 (478)
                                    -.+.|+||+=+-           |.. ...++++.+...|++| -++++..+...
T Consensus        64 --------------l~~~d~Iil~v~-----------~~~-~v~~vi~~l~~~L~~g-~iIID~gn~~~  105 (470)
T PTZ00142         64 --------------LKKPRKVILLIK-----------AGE-AVDETIDNLLPLLEKG-DIIIDGGNEWY  105 (470)
T ss_pred             --------------CCCCCEEEEEeC-----------ChH-HHHHHHHHHHhhCCCC-CEEEECCCCCH
Confidence                          123587777332           222 3467788888888875 55667766543

>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon

Probab=81.16  E-value=18  Score=36.10  Aligned_cols=70  Identities=19%  Similarity=0.222  Sum_probs=43.6

Q ss_pred             CCceeEEEEeCCCCCCCC---CC--------CCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHHHHhc
Q 038592          357 DNKFDVIMVDLDSGDARN---GT--------SAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEFRDVF  425 (478)
Q Consensus       357 ~~~yDvIivDv~s~d~~~---g~--------s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l~~vF  425 (478)
                      ...||+|++|.-.+...-   .+        -.+|.   ...+...-.+.|..+..|++|-..+.+.+-+.+...+++..
T Consensus       115 ~~~~~~iliD~P~g~~~~~~~al~~aD~vL~V~~~D---a~s~~~L~q~~l~~~~~~liNq~~~~s~l~~D~~~~~~~~l  191 (243)
T PF06564_consen  115 LGPYDWILIDTPPGPSPYTRQALAAADLVLVVVNPD---AASHARLHQRALPAGHRFLINQYDPASQLQRDLLQVWRQSL  191 (243)
T ss_pred             cCCCCEEEEeCCCCCcHHHHHHHHhCCeEEEEeCCC---HHHHHHHHHhcccCCcEEEEeccCccchHHHHHHHHHHHhh
Confidence            467999999986543110   00        00111   12333344456788889999999887777777777777777


Q ss_pred             CccE
Q 038592          426 QELY  429 (478)
Q Consensus       426 ~~v~  429 (478)
                      +...
T Consensus       192 ~~ll  195 (243)
T PF06564_consen  192 GRLL  195 (243)
T ss_pred             cccc
Confidence            6543

It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=81.11  E-value=22  Score=36.03  Aligned_cols=45  Identities=18%  Similarity=0.209  Sum_probs=34.7

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL  307 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~  307 (478)
                      ..+|||.|..  .|.++..+.+..+.+|.++..+++-.+.+++.+|.
T Consensus       152 g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa  198 (338)
T cd08295         152 GETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGF  198 (338)
T ss_pred             CCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC
Confidence            4699999963  45555556666788999999999999999886675

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=80.85  E-value=10  Score=38.83  Aligned_cols=41  Identities=20%  Similarity=0.162  Sum_probs=30.0

Q ss_pred             CCeEEEEeCch-hHHHHHHHhh-C-CCEEEEEECChHHHHHHHH
Q 038592          263 RPKALCVGVGG-GALVSFLRTQ-L-DFEVVGVEMDEVVLRVARQ  303 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~-~-~~~V~~VEiDp~Vl~vA~~  303 (478)
                      ..+|||+|+|+ |.++..+.+. . ..+|++++.+++=++.|++
T Consensus       164 g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~  207 (341)
T cd08237         164 RNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF  207 (341)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence            46899999764 4444444443 4 4689999999999999876

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=80.75  E-value=3.4  Score=38.88  Aligned_cols=110  Identities=15%  Similarity=0.217  Sum_probs=59.0

Q ss_pred             eEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-----CCCCeEEEEchHHHHHHHHHhhhcCCCCC
Q 038592          265 KALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-----DGEFLQVSVGDAIEFLEKLARQIVGKNPD  337 (478)
Q Consensus       265 ~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-----~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~  337 (478)
                      +|.|||.|  |.+++..+..+ +.+|+.+|.|++.++.++++..-.     ...++.  .......+..         .+
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~--~~~~~~~~~~---------i~   68 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARA-GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLS--QEEADAALAR---------IS   68 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHT-TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTT--HHHHHHHHHT---------EE
T ss_pred             CEEEEcCCHHHHHHHHHHHhC-CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccch--hhhhhhhhhh---------cc
Confidence            58999998  33455555444 899999999999999988775310     000000  0000111110         00


Q ss_pred             CCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC-ChHHHHHHHHHccCcCcEEEEEeCCCC
Q 038592          338 SFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF-VRKDVLLAARLILSDFGIFVMNVIPPN  410 (478)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f-~~~efl~~~~~~L~~~Gilv~N~~~~~  410 (478)
                      ...       +.    .... ..|+||=-+            |+.+ ...++|+.+.+.+.|+=+|+.|..+-.
T Consensus        69 ~~~-------dl----~~~~-~adlViEai------------~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~  118 (180)
T PF02737_consen   69 FTT-------DL----EEAV-DADLVIEAI------------PEDLELKQELFAELDEICPPDTILASNTSSLS  118 (180)
T ss_dssp             EES-------SG----GGGC-TESEEEE-S-------------SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-
T ss_pred             ccc-------CH----HHHh-hhheehhhc------------cccHHHHHHHHHHHHHHhCCCceEEecCCCCC
Confidence            000       00    0112 567777622            3433 458899999999999999999987664

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []

Probab=80.52  E-value=14  Score=30.39  Aligned_cols=79  Identities=19%  Similarity=0.152  Sum_probs=53.1

Q ss_pred             EEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeC
Q 038592          288 VVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDL  367 (478)
Q Consensus       288 V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv  367 (478)
                      |..||=|+...+..+++|. ..+-..-....|+-+.+..+.                            ...||+|++|.
T Consensus         1 Ilivd~~~~~~~~l~~~l~-~~~~~~v~~~~~~~~~~~~~~----------------------------~~~~d~iiid~   51 (112)
T PF00072_consen    1 ILIVDDDPEIRELLEKLLE-RAGYEEVTTASSGEEALELLK----------------------------KHPPDLIIIDL   51 (112)
T ss_dssp             EEEEESSHHHHHHHHHHHH-HTTEEEEEEESSHHHHHHHHH----------------------------HSTESEEEEES
T ss_pred             cEEEECCHHHHHHHHHHHH-hCCCCEEEEECCHHHHHHHhc----------------------------ccCceEEEEEe
Confidence            5678999999999999987 222112336677777776542                            24599999997


Q ss_pred             CCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeC
Q 038592          368 DSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVI  407 (478)
Q Consensus       368 ~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~  407 (478)
                      ...+.           -..++++.+++.- ++.-+++=..
T Consensus        52 ~~~~~-----------~~~~~~~~i~~~~-~~~~ii~~t~   79 (112)
T PF00072_consen   52 ELPDG-----------DGLELLEQIRQIN-PSIPIIVVTD   79 (112)
T ss_dssp             SSSSS-----------BHHHHHHHHHHHT-TTSEEEEEES
T ss_pred             eeccc-----------ccccccccccccc-ccccEEEecC
Confidence            55432           3478899998777 5555554343

Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=80.44  E-value=23  Score=36.20  Aligned_cols=42  Identities=19%  Similarity=0.191  Sum_probs=28.5

Q ss_pred             CCeEEEEeCch-hH-HHHHHHhhCCCEEEEEECChHH-HHHHHHh
Q 038592          263 RPKALCVGVGG-GA-LVSFLRTQLDFEVVGVEMDEVV-LRVARQY  304 (478)
Q Consensus       263 ~~~VLvIGlGg-G~-L~~~L~~~~~~~V~~VEiDp~V-l~vA~~~  304 (478)
                      ..+|++||.|. |. ++..|...-..+|++++.+++- .+.|+++
T Consensus       178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~  222 (311)
T cd05213         178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL  222 (311)
T ss_pred             CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc
Confidence            57999999983 33 3444444223689999999874 5677664

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=80.36  E-value=5.9  Score=43.49  Aligned_cols=41  Identities=15%  Similarity=0.194  Sum_probs=31.5

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHh
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQY  304 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~  304 (478)
                      -++|.|||+|  |..++..+... +..|+++|.+++.++.++++
T Consensus         5 ~~kV~VIGaG~MG~gIA~~la~a-G~~V~l~d~~~e~l~~~~~~   47 (503)
T TIGR02279         5 VVTVAVIGAGAMGAGIAQVAASA-GHQVLLYDIRAEALARAIAG   47 (503)
T ss_pred             ccEEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHH
Confidence            4689999999  44566655543 78999999999999876543

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=80.30  E-value=19  Score=33.12  Aligned_cols=34  Identities=21%  Similarity=0.088  Sum_probs=22.1

Q ss_pred             CCeEEEEeCchhH--HHHHHHhhCCCEEEEEECChHHHH
Q 038592          263 RPKALCVGVGGGA--LVSFLRTQLDFEVVGVEMDEVVLR  299 (478)
Q Consensus       263 ~~~VLvIGlGgG~--L~~~L~~~~~~~V~~VEiDp~Vl~  299 (478)
                      .++|||+|+|.=+  .++.|.+ .+.+|++|  +|++.+
T Consensus        13 ~~~vlVvGGG~va~rka~~Ll~-~ga~V~VI--sp~~~~   48 (157)
T PRK06719         13 NKVVVIIGGGKIAYRKASGLKD-TGAFVTVV--SPEICK   48 (157)
T ss_pred             CCEEEEECCCHHHHHHHHHHHh-CCCEEEEE--cCccCH
Confidence            5799999999433  3444443 36788888  455443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	478
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	2e-19
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	9e-08
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	6e-06
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	5e-05
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	8e-05
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	1e-04
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	1e-04
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	2e-04
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	2e-04
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	2e-04
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	2e-04
2i7c_A	283	Spermidine synthase; transferase, structural genom	2e-04
2pt6_A	321	Spermidine synthase; transferase, structural genom	3e-04
2o07_A	304	Spermidine synthase; structural genomics, structur	4e-04

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} Length = 317

 Score = 88.1 bits (218), Expect = 2e-19
 Identities = 30/218 (13%), Positives = 63/218 (28%), Gaps = 46/218 (21%)

Query: 235 LVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFL-RTQLDFEVVGVEM 293
           L   Y+  +            +      + +   +G G   +  +            VE+
Sbjct: 66  LEFEYMRWIATGARAFIDAHQD----ASKLRITHLGGGACTMARYFADVYPQSRNTVVEL 121

Query: 294 DEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNS 353
           D  + R++R++F +     +++ V DA    E                            
Sbjct: 122 DAELARLSREWFDIPRAPRVKIRVDDARMVAESFT------------------------- 156

Query: 354 DRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIP-PNRS 412
                  DVI+ D+ +G         P  F   +        L+  G++V N     +  
Sbjct: 157 ---PASRDVIIRDVFAGA------ITPQNFTTVEFFEHCHRGLAPGGLYVANCGDHSDLR 207

Query: 413 FYDMLIQEFRDVFQELYEIDV------GNEENFVLIAT 444
                +    +VF+ +  I            N +L+ +
Sbjct: 208 GAKSELAGMMEVFEHVAVIADPPMLKGRRYGNIILMGS 245

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 6e-08
 Identities = 72/499 (14%), Positives = 140/499 (28%), Gaps = 220/499 (44%)

Query: 28  HHNHHNDNHLLRVAVLDSPVQLSDSLAQPQVALMFVPKHREHDWIFSTESGHLQLLLSCH 87
           HH+HH D                                         E+G  Q     +
Sbjct: 2   HHHHHMD----------------------------------------FETGEHQ-----Y 16

Query: 88  QFSRLILIGDEPTTDDSPDLPITTKHDSFDQKSLEDSVKPLVIALSRKFCFDKNGIYNVP 147
           Q+  ++ + ++   D+            FD K ++D  K     LS++       I    
Sbjct: 17  QYKDILSVFEDAFVDN------------FDCKDVQDMPKS---ILSKEEIDH---IIMSK 58

Query: 148 ------------LLSYEDNVVSSVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRL- 194
                       LLS ++ +V   V E    ++  + L+  ++ E     R+     R+ 
Sbjct: 59  DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY--KFLMSPIKTE----QRQPSMMTRMY 112

Query: 195 --RFKRMPNLVQTEVKL-VP---------EAAISLDSVKIGGKVRFRPHIGVLVHVYLVP 242
             +  R+ N  Q   K  V          +A + L           RP   VL+      
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL-----------RPAKNVLID----- 156

Query: 243 MVASCALIGSYIGERIRFGFRPKALCVGVGG-G-------ALVSF-LRTQLDFEV----V 289
                                      GV G G         +S+ ++ ++DF++    +
Sbjct: 157 ---------------------------GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189

Query: 290 G-VEMDEVVL--------RVARQYFGLEDGEF-LQVSVGDAIEFLEKLARQIVGKNPDSF 339
                 E VL        ++   +    D    +++ +      L +L +    +N    
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN---- 245

Query: 340 GACSLKDGNFLDN--SDRVDNKFDV---IMV---DLDSGDARNG--TSAPPVEFVRKDV- 388
             C L     L N  + +  N F++   I++        D  +   T+   ++     + 
Sbjct: 246 --CLL----VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 389 ------LLAARLILSDFGI---------FVMNVIP------PNR---------------- 411
                 LL   L      +           +++I                          
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359

Query: 412 -SFYDML-IQEFRDVFQEL 428
            S  ++L   E+R +F  L
Sbjct: 360 ESSLNVLEPAEYRKMFDRL 378

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 5e-07
 Identities = 55/340 (16%), Positives = 107/340 (31%), Gaps = 92/340 (27%)

Query: 39  RVAVLDSPVQLSDSLAQPQVALMFVPKHREHDWIFSTESGHLQLLLSC--HQFSRL---- 92
           ++ +     Q++D L     A         H     T      LLL     +   L    
Sbjct: 267 KILLTTRFKQVTDFL---SAATTTHISLDHHSMTL-TPDEVKSLLLKYLDCRPQDLPREV 322

Query: 93  -------I-LIGDEPTTDDSPDLPITTKHDSFDQKS--LEDSVKPLVIALSRKFCFDKNG 142
                  + +I +     D        KH + D+ +  +E S+  L  A  RK  FD+  
Sbjct: 323 LTTNPRRLSIIAES--IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK-MFDRLS 379

Query: 143 IYNVPLLSYEDNV-VSSVVLEKCVGDFAGEMLVEDVE-IESEGGCRKRE--FRRRLRFK- 197
           ++         +  + +++L         +++  DV  + ++    K     ++      
Sbjct: 380 VF-------PPSAHIPTILLSL----IWFDVIKSDVMVVVNK--LHKYSLVEKQPKESTI 426

Query: 198 RMPNLVQTEVKLVPEAAISL-----DSVKIGGKVRFRPHIGVLVHV--YLVPMVASCALI 250
            +P++   E+K+  E   +L     D   I     F     +  ++  Y           
Sbjct: 427 SIPSI-YLELKVKLENEYALHRSIVDHYNI--PKTFDSDDLIPPYLDQY----------F 473

Query: 251 GSYIG---------ERIR--------FGF-RPKALCVGVGGGALVSFLRTQLDFEVVGVE 292
            S+IG         ER+         F F   K         A  S L T          
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ------- 526

Query: 293 MDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIV 332
                L+  + Y    D ++ ++ V   ++FL K+   ++
Sbjct: 527 -----LKFYKPYICDNDPKYERL-VNAILDFLPKIEENLI 560

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* Length = 314

 Score = 47.0 bits (112), Expect = 6e-06
 Identities = 30/171 (17%), Positives = 62/171 (36%), Gaps = 43/171 (25%)

Query: 265 KALCVGVG-GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYF-GLEDGEF----LQVSVG 318
           + L VG G G  L   L+     + V V++D  ++ VA+++      G F      + + 
Sbjct: 80  RVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVID 139

Query: 319 DAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDL-DSGDARNGTS 377
           DA  +LE+                              + ++DV+++DL D      G  
Sbjct: 140 DARAYLER-----------------------------TEERYDVVIIDLTDP----VGED 166

Query: 378 APPVEFVRKDVLLAARLILSDFGIFVM---NVIPPNRSFYDMLIQEFRDVF 425
            P       +     +  L+  G+  M    ++  +   + ++ +  R+ F
Sbjct: 167 NPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAF 217

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* Length = 304

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 35/109 (32%)

Query: 265 KALCVGVG-GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYF-----GLEDGEFLQVSVG 318
           + L +G G GG L   LR         V++D  V+  ++Q+F      L D     V VG
Sbjct: 98  RVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLAD-PRATVRVG 156

Query: 319 DAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDL 367
           D + F+                                DN +DV+++D 
Sbjct: 157 DGLAFVR----------------------------QTPDNTYDVVIIDT 177

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* Length = 296

 Score = 43.4 bits (103), Expect = 8e-05
 Identities = 33/170 (19%), Positives = 58/170 (34%), Gaps = 45/170 (26%)

Query: 265 KALCVGVG-GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEF----LQVSVGD 319
           K L +G G GG L   L+     + +  E+D +V+  AR+Y       F     ++ + +
Sbjct: 93  KVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIAN 152

Query: 320 AIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAP 379
             E++ K                               N+FDVI++  DS D   G    
Sbjct: 153 GAEYVRK-----------------------------FKNEFDVIII--DSTDPTAGQGGH 181

Query: 380 P--VEFVRKDVLLAARLILSDFGIFVM--NVIPPNRSFYDMLIQEFRDVF 425
               EF +          L + G+F         +  ++ +  +    VF
Sbjct: 182 LFTEEFYQA-----CYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVF 226

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 Length = 275

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 34/108 (31%)

Query: 265 KALCVGVG-GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEF----LQVSVGD 319
             L VG G GG +   L+     +   V++D  V+  ++++     G+     + V V D
Sbjct: 78  HVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDD 137

Query: 320 AIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDL 367
               + K                              +N++DVIMVD 
Sbjct: 138 GFMHIAK-----------------------------SENQYDVIMVDS 156

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* Length = 281

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 42/114 (36%)

Query: 265 KALCVGVG-GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEF----------L 313
           + L +G G GG +   L+  +D EV+ VE+DE V+ V++    +++G             
Sbjct: 78  RVLVIGGGDGGTVREVLQHDVD-EVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKA 136

Query: 314 QVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDL 367
           ++++GD  EF++                               +  FDVI+ D 
Sbjct: 137 KLTIGDGFEFIKN------------------------------NRGFDVIIADS 160

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A Length = 334

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 13/85 (15%), Positives = 33/85 (38%), Gaps = 32/85 (37%)

Query: 287 EVVGVEMDEVVLRVARQYFGLEDGEF----LQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342
           ++   E+D++V+ V++Q+F      +    + + +GD + FL+                 
Sbjct: 146 QIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLK----------------- 188

Query: 343 SLKDGNFLDNSDRVDNKFDVIMVDL 367
                      +  +  +D ++VD 
Sbjct: 189 -----------NAAEGSYDAVIVDS 202

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A Length = 262

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 18/144 (12%), Positives = 37/144 (25%), Gaps = 48/144 (33%)

Query: 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIE 322
             K + +  G    ++    + D  +  V+ DE +L     +F          +   A +
Sbjct: 72  ELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ 131

Query: 323 FLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVE 382
            L+                                 K+D+I               P + 
Sbjct: 132 LLDL-----------------------------DIKKYDLIFCL----------QEPDIH 152

Query: 383 FVRKDVLLAARL--ILSDFGIFVM 404
                      L  +L + G+F+ 
Sbjct: 153 R-------IDGLKRMLKEDGVFIS 169

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 Length = 314

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 35/86 (40%)

Query: 287 EVVGVEMDEVVLRVARQYF-----GLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341
           +V   E+DE+V+ VA+++      G      L +  GD  EFL+                
Sbjct: 134 KVTMCEIDEMVIDVAKKFLPGMSCGFSH-PKLDLFCGDGFEFLKN--------------- 177

Query: 342 CSLKDGNFLDNSDRVDNKFDVIMVDL 367
                           N+FDVI+ D 
Sbjct: 178 --------------HKNEFDVIITDS 189

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* Length = 283

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 35/86 (40%)

Query: 287 EVVGVEMDEVVLRVARQYF-----GLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341
            +   E+DE V+ V++ YF     G ED + + V + DA +FLE                
Sbjct: 104 NIDICEIDETVIEVSKIYFKNISCGYED-KRVNVFIEDASKFLEN--------------- 147

Query: 342 CSLKDGNFLDNSDRVDNKFDVIMVDL 367
                         V N +DVI+VD 
Sbjct: 148 --------------VTNTYDVIIVDS 159

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* Length = 321

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 35/86 (40%)

Query: 287 EVVGVEMDEVVLRVARQYF-----GLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341
            +   E+DE V+ V++ YF     G ED + + V + DA +FLE                
Sbjct: 142 NIDICEIDETVIEVSKIYFKNISCGYED-KRVNVFIEDASKFLEN--------------- 185

Query: 342 CSLKDGNFLDNSDRVDNKFDVIMVDL 367
                         V N +DVI+VD 
Sbjct: 186 --------------VTNTYDVIIVDS 197

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* Length = 304

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 35/86 (40%)

Query: 287 EVVGVEMDEVVLRVARQYF-----GLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341
            VV  E+DE V++V++++      G      L + VGD  EF+++               
Sbjct: 121 SVVQCEIDEDVIQVSKKFLPGMAIGYSS-SKLTLHVGDGFEFMKQ--------------- 164

Query: 342 CSLKDGNFLDNSDRVDNKFDVIMVDL 367
                           + FDVI+ D 
Sbjct: 165 --------------NQDAFDVIITDS 176

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	478
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	99.97
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.96
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	99.96
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.93
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.92
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.92
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.91
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.9
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.9
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.89
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.89
2o07_A	304	Spermidine synthase; structural genomics, structur	99.87
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.87
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.86
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.85
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.83
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.28
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.23
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.22
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.22
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.18
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.18
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.18
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.16
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.15
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.15
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.14
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.13
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.11
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.1
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.08
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.07
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.07
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.04
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.03
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.03
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.02
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.02
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	98.99
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	98.98
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	98.96
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	98.95
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	98.95
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	98.94
3lpm_A	259	Putative methyltransferase; structural genomics, p	98.94
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	98.94
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	98.93
1ws6_A	171	Methyltransferase; structural genomics, riken stru	98.93
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	98.93
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	98.93
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	98.92
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	98.92
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	98.9
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	98.9
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	98.89
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	98.88
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	98.87
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	98.87
2b3t_A	276	Protein methyltransferase HEMK; translation termin	98.86
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	98.86
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	98.85
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	98.85
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	98.85
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	98.84
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	98.84
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	98.84
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	98.84
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	98.83
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	98.82
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	98.82
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	98.81
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	98.81
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	98.81
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	98.81
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	98.8
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	98.8
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.8
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	98.8
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	98.79
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	98.78
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	98.78
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.77
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	98.77
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	98.77
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	98.77
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	98.77
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	98.77
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	98.77
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	98.76
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	98.76
3i9f_A	170	Putative type 11 methyltransferase; structural gen	98.76
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	98.76
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.76
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.75
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	98.75
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	98.75
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.75
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	98.75
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	98.74
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	98.74
3f4k_A	257	Putative methyltransferase; structural genomics, P	98.74
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.74
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	98.74
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	98.73
3ocj_A	305	Putative exported protein; structural genomics, PS	98.73
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	98.73
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	98.73
2p7i_A	250	Hypothetical protein; putative methyltransferase,	98.72
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.72
2frn_A	278	Hypothetical protein PH0793; structural genomics,	98.72
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	98.71
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.71
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	98.7
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	98.7
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	98.7
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	98.7
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	98.7
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	98.7
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	98.69
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	98.69
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	98.69
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	98.69
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	98.68
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	98.68
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	98.68
2b25_A	336	Hypothetical protein; structural genomics, methyl	98.68
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	98.68
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	98.68
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	98.68
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.68
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	98.67
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	98.67
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	98.67
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	98.67
3lcc_A	235	Putative methyl chloride transferase; halide methy	98.66
2qm3_A	373	Predicted methyltransferase; putative methyltransf	98.66
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	98.66
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	98.65
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	98.64
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	98.64
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	98.64
1xxl_A	239	YCGJ protein; structural genomics, protein structu	98.64
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	98.63
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	98.63
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	98.63
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	98.63
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	98.63
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.62
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.62
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	98.62
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	98.6
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	98.6
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	98.6
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.6
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	98.59
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.59
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	98.59
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	98.58
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	98.58
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	98.58
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	98.58
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	98.58
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	98.57
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	98.57
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	98.56
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	98.56
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	98.56
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	98.56
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.56
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.55
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	98.55
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	98.54
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	98.54
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.53
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	98.52
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	98.52
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	98.52
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	98.52
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	98.52
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	98.51
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	98.51
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.51
3k6r_A	278	Putative transferase PH0793; structural genomics,	98.5
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	98.5
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.5
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.49
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	98.48
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.48
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	98.48
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.48
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	98.47
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.46
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	98.46
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	98.46
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.45
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	98.45
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	98.44
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	98.44
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.44
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.43
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	98.42
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.4
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.4
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.38
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.38
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	98.37
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.37
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.36
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.33
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.32
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	98.32
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.32
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.31
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	98.29
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	98.28
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	98.27
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.25
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.25
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	98.24
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.23
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.23
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	98.22
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	98.21
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.2
2h00_A	254	Methyltransferase 10 domain containing protein; st	98.2
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	98.19
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	98.19
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.19
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.18
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.18
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	98.17
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.17
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.14
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.14
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.13
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.11
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	98.1
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.09
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.08
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.08
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.07
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.06
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	98.03
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	98.03
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.0
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	97.98
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	97.98
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	97.97
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	97.97
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	97.96
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	97.95
3ll7_A	410	Putative methyltransferase; methytransferase, stru	97.95
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	97.94
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	97.93
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	97.93
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	97.91
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	97.9
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	97.89
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	97.84
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	97.82
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	97.81
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	97.76
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	97.74
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	97.69
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	97.68
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	97.66
2oo3_A	283	Protein involved in catabolism of external DNA; st	97.64
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	97.62
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	97.56
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	97.54
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	97.5
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	97.5
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	97.46
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	97.45
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	97.44
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	97.41
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	97.4
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	97.35
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	97.34
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	97.33
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	97.33
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.05
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	96.99
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	96.97
3lkd_A	542	Type I restriction-modification system methyltrans	96.96
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	96.96
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	96.83
3khk_A	544	Type I restriction-modification system methylation	96.71
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	96.55
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	96.51
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	96.5
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	95.82
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	95.8
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	95.46
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	95.41
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	95.26
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	95.06
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	94.97
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	94.96
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	94.77
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	94.74
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	94.68
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	94.47
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	94.44
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	94.42
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	94.41
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	94.3
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	94.27
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	94.19
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	94.14
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	94.11
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	94.09
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	93.57
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	93.56
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	93.53
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	93.52
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	93.4
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	93.39
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	93.37
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	93.35
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	93.28
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	93.24
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	93.21
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	93.18
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	93.16
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	93.15
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	93.15
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	93.14
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	93.0
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	92.98
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	92.93
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	92.85
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	92.76
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	92.59
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	92.53
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	92.38
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	92.28
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	92.24
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	92.24
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	92.22
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	92.14
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	92.09
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	92.08
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	91.97
4eye_A	342	Probable oxidoreductase; structural genomics, niai	91.96
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	91.87
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	91.85
3gms_A	340	Putative NADPH:quinone reductase; structural genom	91.8
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	91.65
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	91.65
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	91.52
2zig_A	297	TTHA0409, putative modification methylase; methylt	91.45
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	91.43
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	91.4
3c85_A	183	Putative glutathione-regulated potassium-efflux S	91.15
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	91.1
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	91.09
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	91.03
3ufb_A	530	Type I restriction-modification system methyltran	91.01
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	90.98
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	90.94
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	90.92
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	90.92
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	90.91
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	90.8
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	90.77
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	90.76
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	90.74
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	90.67
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	90.65
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	90.64
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	90.63
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	90.63
1id1_A	153	Putative potassium channel protein; RCK domain, E.	90.56
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	90.38
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	90.34
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	90.3
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	90.3
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	90.17
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	90.16
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	90.09
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	90.02
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	90.01
2zig_A	297	TTHA0409, putative modification methylase; methylt	89.91
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	89.9
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	89.89
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	89.88
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	89.82
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	89.77
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	89.75
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	89.52
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	89.44
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	89.38
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	89.38
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	89.35
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	89.19
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	89.19
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	89.12
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	89.09
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	89.01
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	88.96
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	88.91
2hwk_A	320	Helicase NSP2; rossman fold, alpha/beta/alpha, mul	88.88
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	88.7
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	88.68
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	88.63
4g65_A	461	TRK system potassium uptake protein TRKA; structur	88.6
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	88.56
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	88.45
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	88.43
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	88.38
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	88.21
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	88.11
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	87.98
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	87.83
3qha_A	296	Putative oxidoreductase; seattle structural genomi	87.63
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	87.3
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	87.21
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	86.97
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	86.78
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	86.45
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	86.31
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	86.28
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	86.12
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	86.03
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	85.9
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	85.75
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	85.72
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	85.33
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	85.13
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	85.12
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	85.12
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	85.01
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	84.87
4ezb_A	317	Uncharacterized conserved protein; structural geno	84.77
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	84.72
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	84.65
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	84.55
4e7p_A	150	Response regulator; DNA binding, cytosol, transcri	84.34
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	84.33
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	84.32
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	84.0
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	83.97
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	83.92
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	83.81
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	83.6
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	83.49
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	83.37
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	83.22
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	83.07
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	82.93
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	82.52
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	82.4
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	82.18
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	82.01
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	81.86
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	81.8
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	81.78
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	81.6
3t8y_A	164	CHEB, chemotaxis response regulator protein-glutam	81.48
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	81.05
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	80.98
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	80.8
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	80.76
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	80.43
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	80.21
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	80.15

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=99.97  E-value=3.3e-31  Score=265.22  Aligned_cols=209  Identities=19%  Similarity=0.189  Sum_probs=168.7

Q ss_pred             ceeeEEEEeEecccCceEEEEEeeccccCCccccceeeEEEEeeCCCeEEeeeeecccccccccccccCCccccccCCcc
Q 038592          155 VVSSVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGV  234 (478)
Q Consensus       155 i~~r~vl~~~~S~~~g~~vVedv~~e~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~d~~~  234 (478)
                      +++.++|++++|+||...|+|.            ..|+|+++++  +.+|+.                 .+     |   
T Consensus        25 ~~v~~vl~~~~S~yQ~i~v~~s------------~~~G~~L~LD--g~~q~t-----------------e~-----D---   65 (294)
T 3o4f_A           25 FAVDNVLYHEKTDHQDLIIFEN------------AAFGRVMALD--GVVQTT-----------------ER-----D---   65 (294)
T ss_dssp             EEESEEEEEEC---CCEEEEEE------------TTTEEEEEET--TEEEEE-----------------TT-----T---
T ss_pred             EEEeeEEEeccCCCceEEEEEc------------CCcceEEEEC--Cchhhc-----------------cc-----c---
Confidence            5677999999999999999983            1367777774  899975                 11     2   


Q ss_pred             cchhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhCC-CEEEEEECChHHHHHHHHhcC-----CC
Q 038592          235 LVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLD-FEVVGVEMDEVVLRVARQYFG-----LE  308 (478)
Q Consensus       235 L~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg-----~~  308 (478)
                       ++.||++|++..++.++         +|++|||||+|+|++++++.++++ .+|++|||||+|+++|++||.     ..
T Consensus        66 -e~~YhE~l~h~~l~~~p---------~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~  135 (294)
T 3o4f_A           66 -EFIYHEMMTHVPLLAHG---------HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSY  135 (294)
T ss_dssp             -HHHHHHHHHHHHHHHSS---------CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGG
T ss_pred             -HHHHHHHHHHHHHhhCC---------CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCcccccccc
Confidence             68999999998776654         389999999999999999999975 699999999999999999984     23


Q ss_pred             CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHH
Q 038592          309 DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDV  388 (478)
Q Consensus       309 ~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~ef  388 (478)
                      .|||++++++||++||++                             ..++||+||+|++++..      |+..|++.+|
T Consensus       136 ~dpRv~v~~~Dg~~~l~~-----------------------------~~~~yDvIi~D~~dp~~------~~~~L~t~eF  180 (294)
T 3o4f_A          136 DDPRFKLVIDDGVNFVNQ-----------------------------TSQTFDVIISDCTDPIG------PGESLFTSAF  180 (294)
T ss_dssp             GCTTEEEEESCTTTTTSC-----------------------------SSCCEEEEEESCCCCCC------TTCCSSCCHH
T ss_pred             CCCcEEEEechHHHHHhh-----------------------------ccccCCEEEEeCCCcCC------CchhhcCHHH
Confidence            689999999999999854                             56789999999876542      5788999999


Q ss_pred             HHHHHHccCcCcEEEEEeCCC--CchHHHHHHHHHHHhcCccEEE--eec---ccceEEEEEEcCC
Q 038592          389 LLAARLILSDFGIFVMNVIPP--NRSFYDMLIQEFRDVFQELYEI--DVG---NEENFVLIATGLS  447 (478)
Q Consensus       389 l~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~~~--~v~---~~~N~Vl~a~~~~  447 (478)
                      ++.++++|+|||++++|..++  +......+.++++++|+.+..+  .++   .+.....+|++.+
T Consensus       181 y~~~~~~L~p~Gv~v~q~~sp~~~~~~~~~~~~~l~~~F~~v~~~~~~vPty~~g~w~f~~as~~~  246 (294)
T 3o4f_A          181 YEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHYFSDVGFYQAAIPTYYGGIMTFAWATDND  246 (294)
T ss_dssp             HHHHHHTEEEEEEEEEEEEESSSCCHHHHHHHHHHHHHCSEEEEEEECCTTSSSSCEEEEEEESCT
T ss_pred             HHHHHHHhCCCCEEEEecCCcccChHHHHHHHHHHHhhCCceeeeeeeeccCCCcceeheeEECCC
Confidence            999999999999999998776  5566778899999999987444  333   2334556788764

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.96  E-value=1.1e-28  Score=249.67  Aligned_cols=197  Identities=17%  Similarity=0.189  Sum_probs=165.2

Q ss_pred             eeEEEEeeCCCeEEeeeeecccccccccccccCCccccccCCcccchhcHHHHHHHHhh---hcccccccccCCCCCeEE
Q 038592          191 RRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGVLVHVYLVPMVASCAL---IGSYIGERIRFGFRPKAL  267 (478)
Q Consensus       191 ~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~d~~~L~~~Y~~~m~~~l~l---~~~~~~~~~~~g~~~~VL  267 (478)
                      +.|+++++  +.+||.+.+.                    ||..+++.||++|++.+++   .++.       +.+.+||
T Consensus        44 ~g~~L~lD--G~~Qs~~~l~--------------------dP~~le~~Y~e~m~~~~~~l~~~~p~-------p~~~rVL   94 (317)
T 3gjy_A           44 DGWLISIN--GVPSSHIVLG--------------------QPQALEFEYMRWIATGARAFIDAHQD-------ASKLRIT   94 (317)
T ss_dssp             TEEEEEET--TEEEEEEETT--------------------CTTCCCSHHHHHHHHHHHHHHHHHSC-------GGGCEEE
T ss_pred             ceEEEEEC--CEeEEEEECC--------------------CCcchhhHHHHHHHHHHHhhcccCCC-------CCCCEEE
Confidence            56777774  8999986652                    5678899999999999876   3332       1134999


Q ss_pred             EEeCchhHHHHHHHhh-CCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccC
Q 038592          268 CVGVGGGALVSFLRTQ-LDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKD  346 (478)
Q Consensus       268 vIGlGgG~L~~~L~~~-~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~  346 (478)
                      +||+|+|+++++|.++ ++.+|++|||||.|+++|++||++..++|++++++||++|+++                    
T Consensus        95 dIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~--------------------  154 (317)
T 3gjy_A           95 HLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAES--------------------  154 (317)
T ss_dssp             EESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHT--------------------
T ss_pred             EEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhh--------------------
Confidence            9999999999999995 5789999999999999999999987789999999999999864                    


Q ss_pred             CCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC-CchHHHHHHHHHHHhc
Q 038592          347 GNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP-NRSFYDMLIQEFRDVF  425 (478)
Q Consensus       347 ~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~-~~~~~~~v~~~l~~vF  425 (478)
                              ....+||+||+|+++...      +|.++++.+||+.++++|+|||+|++|+.+. +....+.++++|+++|
T Consensus       155 --------~~~~~fDvIi~D~~~~~~------~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~vF  220 (317)
T 3gjy_A          155 --------FTPASRDVIIRDVFAGAI------TPQNFTTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEVF  220 (317)
T ss_dssp             --------CCTTCEEEEEECCSTTSC------CCGGGSBHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHHC
T ss_pred             --------ccCCCCCEEEECCCCccc------cchhhhHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHHC
Confidence                    135689999999877542      4678899999999999999999999999854 3456788999999999


Q ss_pred             CccEEEee------cccceEEEEEEcCCCCC
Q 038592          426 QELYEIDV------GNEENFVLIATGLSIVS  450 (478)
Q Consensus       426 ~~v~~~~v------~~~~N~Vl~a~~~~~~~  450 (478)
                      ++++.+..      ...+|+|++|++.++..
T Consensus       221 ~~v~~~~~~~~~~g~~~gN~Vl~As~~plp~  251 (317)
T 3gjy_A          221 EHVAVIADPPMLKGRRYGNIILMGSDTEFFS  251 (317)
T ss_dssp             SEEEEEECHHHHTTSSCEEEEEEEESSCCCC
T ss_pred             CceEEEEecCCCCCCcCceEEEEEECCCCCc
Confidence            99887763      25689999999999876

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=99.96  E-value=5.9e-29  Score=256.09  Aligned_cols=197  Identities=15%  Similarity=0.144  Sum_probs=157.2

Q ss_pred             ceeeEEEEeEecccCceEEEEEeeccccCCccccceeeEEEEeeCCCeEEeeeeecccccccccccccCCccccccCCcc
Q 038592          155 VVSSVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGV  234 (478)
Q Consensus       155 i~~r~vl~~~~S~~~g~~vVedv~~e~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~d~~~  234 (478)
                      +.+.++|++++|+||...|+|.            ..|+|+++++  +.+|+.     +                 .|   
T Consensus       149 y~v~~vl~~~~S~yQ~I~V~es------------~~~Gr~L~LD--G~~Q~t-----e-----------------~D---  189 (381)
T 3c6k_A          149 YDIDEVVYDEDSPYQNIKILHS------------KQFGNILILS--GDVNLA-----E-----------------SD---  189 (381)
T ss_dssp             CCEEEEEEEEECSSCEEEEEEE------------TTTEEEEEET--TEEEEE-----T-----------------TC---
T ss_pred             EEeEEEEEeCCCCCceEEEEEc------------CCcceEEEEC--Cceeee-----C-----------------Ch---
Confidence            4568999999999999999983            1367777774  899975     1                 12   


Q ss_pred             cchhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC------
Q 038592          235 LVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE------  308 (478)
Q Consensus       235 L~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~------  308 (478)
                        +.||++|++.+++.+          +|++|||||+|+|++++++.++...+|++|||||+|+++|++||...      
T Consensus       190 --~~Y~e~l~h~~l~~~----------~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d  257 (381)
T 3c6k_A          190 --LAYTRAIMGSGKEDY----------TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLD  257 (381)
T ss_dssp             --HHHHHHHTTTTCCCC----------TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCS
T ss_pred             --HHHHHHHHHHHhhcC----------CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhc
Confidence              569999998865543          26899999999999999999987789999999999999999998642      


Q ss_pred             --CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChH
Q 038592          309 --DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRK  386 (478)
Q Consensus       309 --~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~  386 (478)
                        .++|++++++||++|+++.+.                          ...+||+||+|+++.....+...|+..+++.
T Consensus       258 ~pr~~rv~vii~Da~~fl~~~~~--------------------------~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~  311 (381)
T 3c6k_A          258 NLKGDCYQVLIEDCIPVLKRYAK--------------------------EGREFDYVINDLTAVPISTSPEEDSTWEFLR  311 (381)
T ss_dssp             SSEETTEEEEESCHHHHHHHHHH--------------------------HTCCEEEEEEECCSSCCCCC----CHHHHHH
T ss_pred             cccccceeeehHHHHHHHHhhhh--------------------------ccCceeEEEECCCCCcccCcccCcchHHHHH
Confidence              347899999999999987543                          3568999999998754333333456678999


Q ss_pred             HHHHHHHHccCcCcEEEEEeCCC-CchHHHHHHHHHHHhcCcc
Q 038592          387 DVLLAARLILSDFGIFVMNVIPP-NRSFYDMLIQEFRDVFQEL  428 (478)
Q Consensus       387 efl~~~~~~L~~~Gilv~N~~~~-~~~~~~~v~~~l~~vF~~v  428 (478)
                      +||+.++++|+|+|+++++..+. ..+....+.++|+++|+.+
T Consensus       312 eFy~~~~~~L~p~GVlv~Q~~s~~~~~~~~~i~~tl~~vF~~v  354 (381)
T 3c6k_A          312 LILDLSMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYCPV  354 (381)
T ss_dssp             HHHHHHHHTEEEEEEEEEEEEETTCHHHHHHHHHHHTTSSSCE
T ss_pred             HHHHHHHHhcCCCCEEEEecCCCcchhHHHHHHHHHHHhCCcc
Confidence            99999999999999999987554 2344677889999999976

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.93  E-value=2e-24  Score=214.24  Aligned_cols=207  Identities=20%  Similarity=0.240  Sum_probs=163.4

Q ss_pred             ceeeEEEEeEecccCceEEEEEeeccccCCccccceeeEEEEeeCCCeEEeeeeecccccccccccccCCccccccCCcc
Q 038592          155 VVSSVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGV  234 (478)
Q Consensus       155 i~~r~vl~~~~S~~~g~~vVedv~~e~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~d~~~  234 (478)
                      ++.++++++.+|+|+...|+++-            .++|.++++  +.+||..                      .|   
T Consensus        17 ~~~~~~l~~~~s~~~~i~v~~~~------------~~g~~L~ld--g~~q~~~----------------------~d---   57 (275)
T 1iy9_A           17 MKVNKTLHTEQTEFQHLEMVETE------------EFGNMLFLD--GMVMTSE----------------------KD---   57 (275)
T ss_dssp             EEEEEEEEEEECSSCEEEEEEET------------TTEEEEEET--TEEEEET----------------------TT---
T ss_pred             EeeeeEEEEEECCCceEEEEEcC------------CCCEEEEEC--CEEeecc----------------------cc---
Confidence            67789999999999877777621            244556664  6789751                      02   


Q ss_pred             cchhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhc-----CCC
Q 038592          235 LVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYF-----GLE  308 (478)
Q Consensus       235 L~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~F-----g~~  308 (478)
                       .+.||++|.+..++.++         .+.+||+||+|+|.++..+.+++ ..+|++||+||.|+++|+++|     ++ 
T Consensus        58 -e~~y~e~l~~~~l~~~~---------~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~-  126 (275)
T 1iy9_A           58 -EFVYHEMVAHVPLFTHP---------NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKL-  126 (275)
T ss_dssp             -HHHHHHHHHHHHHHHSS---------SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTT-
T ss_pred             -hhHHHHHHHHHHHhhCC---------CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhcccc-
Confidence             58899988875444332         26899999999999999999886 479999999999999999998     33 


Q ss_pred             CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHH
Q 038592          309 DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDV  388 (478)
Q Consensus       309 ~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~ef  388 (478)
                      .++|++++++|+++++.+                             ...+||+|++|.....      .|+..+++.+|
T Consensus       127 ~~~rv~v~~~D~~~~l~~-----------------------------~~~~fD~Ii~d~~~~~------~~~~~l~~~~~  171 (275)
T 1iy9_A          127 DDPRVDVQVDDGFMHIAK-----------------------------SENQYDVIMVDSTEPV------GPAVNLFTKGF  171 (275)
T ss_dssp             TSTTEEEEESCSHHHHHT-----------------------------CCSCEEEEEESCSSCC------SCCCCCSTTHH
T ss_pred             CCCceEEEECcHHHHHhh-----------------------------CCCCeeEEEECCCCCC------CcchhhhHHHH
Confidence            478999999999999864                             3567999999876532      25778899999


Q ss_pred             HHHHHHccCcCcEEEEEeCCC--CchHHHHHHHHHHHhcCccEEEe--ec---ccceEEEEEEcC
Q 038592          389 LLAARLILSDFGIFVMNVIPP--NRSFYDMLIQEFRDVFQELYEID--VG---NEENFVLIATGL  446 (478)
Q Consensus       389 l~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~~~~--v~---~~~N~Vl~a~~~  446 (478)
                      ++.++++|+|||++++|..++  +.+....+.++|+++|+++..+.  ++   .+.+.+++|++.
T Consensus       172 ~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~~~~ask~  236 (275)
T 1iy9_A          172 YAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWTFTIGSKK  236 (275)
T ss_dssp             HHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEECCTTSGGGCEEEEEEESS
T ss_pred             HHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEEEEecCcccCcceEEEEeeCC
Confidence            999999999999999998764  46667889999999999865443  33   334666788875

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.92  E-value=8.3e-24  Score=213.55  Aligned_cols=211  Identities=18%  Similarity=0.165  Sum_probs=166.1

Q ss_pred             ceeeEEEEeEecccCceEEEEEeeccccCCccccceeeEEEEeeCCCeEEeeeeecccccccccccccCCccccccCCcc
Q 038592          155 VVSSVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGV  234 (478)
Q Consensus       155 i~~r~vl~~~~S~~~g~~vVedv~~e~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~d~~~  234 (478)
                      ++.++++++.+|+|+...|+|+-            .++++++++  +.+||..+                          
T Consensus        19 ~~~~~vl~~~~s~~q~i~v~~~~------------~~g~~l~ld--g~~q~~~~--------------------------   58 (314)
T 1uir_A           19 RRMERVIASGKTPFQDYFLFESK------------GFGKVLILD--KDVQSTER--------------------------   58 (314)
T ss_dssp             EECSEEEEEEECSSCEEEEEEET------------TTEEEEEET--TEEEEETT--------------------------
T ss_pred             EecceEEEEEECCCCCEEEEEcC------------CCcEEEEEC--CEEeeeec--------------------------
Confidence            56789999999999999888731            256667764  68998621                          


Q ss_pred             cchhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCC-----C
Q 038592          235 LVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGL-----E  308 (478)
Q Consensus       235 L~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~-----~  308 (478)
                      ..+.||++|.+..++.++         .+.+||+||+|+|.++..+.+++ ..+|++||+||.++++|+++|..     .
T Consensus        59 ~e~~Y~e~l~~~~l~~~~---------~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~  129 (314)
T 1uir_A           59 DEYIYHETLVHPAMLTHP---------EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAF  129 (314)
T ss_dssp             THHHHHHHHHHHHHHHSS---------CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGG
T ss_pred             chhHHHHHHHHHHHhcCC---------CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccc
Confidence            257899999876544432         26899999999999999999886 57999999999999999999852     1


Q ss_pred             CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHH
Q 038592          309 DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDV  388 (478)
Q Consensus       309 ~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~ef  388 (478)
                      .+++++++++|+.+++..                             ...+||+|++|.....   ++.+|+..+++.+|
T Consensus       130 ~~~~v~~~~~D~~~~l~~-----------------------------~~~~fD~Ii~d~~~~~---~~~~~~~~l~~~~~  177 (314)
T 1uir_A          130 DDPRAVLVIDDARAYLER-----------------------------TEERYDVVIIDLTDPV---GEDNPARLLYTVEF  177 (314)
T ss_dssp             GCTTEEEEESCHHHHHHH-----------------------------CCCCEEEEEEECCCCB---STTCGGGGGSSHHH
T ss_pred             cCCceEEEEchHHHHHHh-----------------------------cCCCccEEEECCCCcc---cccCcchhccHHHH
Confidence            368999999999999865                             3567999999976533   12346677889999


Q ss_pred             HHHHHHccCcCcEEEEEeCCC---CchHHHHHHHHHHHhcCccEEE----eecccceEEEEEEcC
Q 038592          389 LLAARLILSDFGIFVMNVIPP---NRSFYDMLIQEFRDVFQELYEI----DVGNEENFVLIATGL  446 (478)
Q Consensus       389 l~~~~~~L~~~Gilv~N~~~~---~~~~~~~v~~~l~~vF~~v~~~----~v~~~~N~Vl~a~~~  446 (478)
                      ++.++++|+|||++++|..++   +.+....+.+.++++|+++..+    +..++.+.+++|++.
T Consensus       178 l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vP~~~g~~~~~~as~~  242 (314)
T 1uir_A          178 YRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLNFGFLLASDA  242 (314)
T ss_dssp             HHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEEEEGGGTEEEEEEEEESS
T ss_pred             HHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHHCCceEEEEEecCCCCCeEEEEEEECC
Confidence            999999999999999997553   3566788999999999976433    234446778889987

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.90  E-value=2.7e-22  Score=199.22  Aligned_cols=208  Identities=22%  Similarity=0.224  Sum_probs=158.3

Q ss_pred             ceeeEEEEeEecccCceEEEEEeeccccCCccccceeeEEEEeeCCCeEEeeeeecccccccccccccCCccccccCCcc
Q 038592          155 VVSSVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGV  234 (478)
Q Consensus       155 i~~r~vl~~~~S~~~g~~vVedv~~e~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~d~~~  234 (478)
                      ++.++++++.+|+|+...|+++-            .++|.++++  +.+|+..                      .|   
T Consensus        17 ~~~~~~l~~~~s~~~~i~v~~~~------------~~g~~L~ld--g~~q~~~----------------------~d---   57 (281)
T 1mjf_A           17 FKIKKKIYEKLSKYQKIEVYETE------------GFGRLLALD--GTVQLVT----------------------LG---   57 (281)
T ss_dssp             ECEEEEEEEEECSSCEEEEEEES------------SSCEEEEET--TEEEEET----------------------TT---
T ss_pred             EeeccEEEEeeCCCccEEEEECC------------CccEEEEEC--CEeeecc----------------------cc---
Confidence            56789999999999988887731            233445553  6899751                      01   


Q ss_pred             cchhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhc----CCC--
Q 038592          235 LVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYF----GLE--  308 (478)
Q Consensus       235 L~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~F----g~~--  308 (478)
                       .+.||++|.+...+..+         .+.+||+||+|+|.++..+.++...+|++||+||.++++|+++|    ++.  
T Consensus        58 -~~~y~e~l~~~~l~~~~---------~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~  127 (281)
T 1mjf_A           58 -ERSYHEPLVHPAMLAHP---------KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEA  127 (281)
T ss_dssp             -THHHHHHHHHHHHHHSS---------CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHH
T ss_pred             -chHHHHHHHHHHHhhCC---------CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHhhccccccc
Confidence             57899998865433332         26799999999999999999884469999999999999999999    321  


Q ss_pred             ----CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCC
Q 038592          309 ----DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFV  384 (478)
Q Consensus       309 ----~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~  384 (478)
                          .+++++++++|+.+++..                              ..+||+|++|.....      +|+..++
T Consensus       128 ~~~~~~~~v~~~~~D~~~~l~~------------------------------~~~fD~Ii~d~~~~~------~~~~~l~  171 (281)
T 1mjf_A          128 MLNGKHEKAKLTIGDGFEFIKN------------------------------NRGFDVIIADSTDPV------GPAKVLF  171 (281)
T ss_dssp             HHTTCCSSEEEEESCHHHHHHH------------------------------CCCEEEEEEECCCCC-----------TT
T ss_pred             cccCCCCcEEEEECchHHHhcc------------------------------cCCeeEEEECCCCCC------Ccchhhh
Confidence                368999999999999853                              346999999976532      2567778


Q ss_pred             hHHHHHHHHHccCcCcEEEEEeCCC--CchHHHHHHHHHHHhcCccEEEe--e--cccceEEEEEEcCC
Q 038592          385 RKDVLLAARLILSDFGIFVMNVIPP--NRSFYDMLIQEFRDVFQELYEID--V--GNEENFVLIATGLS  447 (478)
Q Consensus       385 ~~efl~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~~~~--v--~~~~N~Vl~a~~~~  447 (478)
                      +.+|++.++++|+|||++++|..++  +.+..+.+.+.++++|+++..+.  +  .++.+.+++|++.+
T Consensus       172 ~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~~vP~~~g~~~~~~as~~~  240 (281)
T 1mjf_A          172 SEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYYYSFPVIGYASPWAFLVGVKGD  240 (281)
T ss_dssp             SHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCSEEEEEEECCTTSSSSEEEEEEEESS
T ss_pred             HHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCceEEEEEecCCCCceEEEEEeeCCC
Confidence            8999999999999999999997554  56677889999999999865443  2  33457788998873

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.90  E-value=3.8e-22  Score=198.50  Aligned_cols=208  Identities=19%  Similarity=0.215  Sum_probs=159.3

Q ss_pred             ceeeEEEEeEecccCceEEEEEeeccccCCccccceeeEEEEeeCCCeEEeeeeecccccccccccccCCccccccCCcc
Q 038592          155 VVSSVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGV  234 (478)
Q Consensus       155 i~~r~vl~~~~S~~~g~~vVedv~~e~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~d~~~  234 (478)
                      ++..+++++.+|+|+...|+|+-            .++++++++  +.+|+..                      .|   
T Consensus        20 ~~~~~~l~~~~s~~q~i~v~~~~------------~~g~~l~ld--g~~q~~~----------------------~~---   60 (283)
T 2i7c_A           20 LKIKKILYETKSKYQNVLVFEST------------TYGKVLVLD--GVIQLTE----------------------KD---   60 (283)
T ss_dssp             EEEEEEEEEEECSSSEEEEEEES------------SSCEEEEET--TEEEEET----------------------TT---
T ss_pred             EecccEEEEEECCCccEEEEEcC------------CCCEEEEEC--CEeeecc----------------------cc---
Confidence            56789999999999987777631            244555554  7889740                      01   


Q ss_pred             cchhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCC----C
Q 038592          235 LVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLE----D  309 (478)
Q Consensus       235 L~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~----~  309 (478)
                       .+.||++|.+..++..+         .+.+||+||+|+|.+++.+.++. ..+|++||+||.++++|+++|...    .
T Consensus        61 -e~~Y~e~l~~~~l~~~~---------~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~  130 (283)
T 2i7c_A           61 -EFAYHEMMTHVPMTVSK---------EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYE  130 (283)
T ss_dssp             -HHHHHHHHHHHHHTTSS---------SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGG
T ss_pred             -hhhHHHHHHHHHHhcCC---------CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccC
Confidence             57898876654333222         36899999999999999999886 579999999999999999998643    3


Q ss_pred             CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHH
Q 038592          310 GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVL  389 (478)
Q Consensus       310 d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl  389 (478)
                      ++|++++++|+.+++..                             ...+||+|++|..+..      .|+..+++.+|+
T Consensus       131 ~~~v~~~~~D~~~~l~~-----------------------------~~~~fD~Ii~d~~~~~------~~~~~l~~~~~l  175 (283)
T 2i7c_A          131 DKRVNVFIEDASKFLEN-----------------------------VTNTYDVIIVDSSDPI------GPAETLFNQNFY  175 (283)
T ss_dssp             STTEEEEESCHHHHHHH-----------------------------CCSCEEEEEEECCCTT------TGGGGGSSHHHH
T ss_pred             CCcEEEEECChHHHHHh-----------------------------CCCCceEEEEcCCCCC------CcchhhhHHHHH
Confidence            68999999999999865                             3567999999975432      245678889999


Q ss_pred             HHHHHccCcCcEEEEEeCCC--CchHHHHHHHHHHHhcCccE--EEeecc--cce-EEEEEEcC
Q 038592          390 LAARLILSDFGIFVMNVIPP--NRSFYDMLIQEFRDVFQELY--EIDVGN--EEN-FVLIATGL  446 (478)
Q Consensus       390 ~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~--~~~v~~--~~N-~Vl~a~~~  446 (478)
                      +.++++|+|||++++|..++  +.+....+.+.++++|+.+.  ...+..  .++ ..++|++.
T Consensus       176 ~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vP~y~~g~~g~~~~s~~  239 (283)
T 2i7c_A          176 EKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGILCCSKT  239 (283)
T ss_dssp             HHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEEECTTSGGGEEEEEEEESS
T ss_pred             HHHHHhcCCCcEEEEECCCcccCHHHHHHHHHHHHHHCCceEEEEEEcCCcCCCcEEEEEEeCC
Confidence            99999999999999998764  45667888999999999764  344443  244 45667765

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.89  E-value=9e-22  Score=199.04  Aligned_cols=209  Identities=19%  Similarity=0.197  Sum_probs=151.1

Q ss_pred             ceeeEEEEeEecccCceEEEEEeeccccCCccccceeeEEEEeeCCCeEEeeeeecccccccccccccCCccccccCCcc
Q 038592          155 VVSSVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGV  234 (478)
Q Consensus       155 i~~r~vl~~~~S~~~g~~vVedv~~e~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~d~~~  234 (478)
                      ++..+++++.+|+|+...|+|+-            .+++.++++  +.+|+..                      .|   
T Consensus        50 ~~~~~vl~~~~s~~q~i~v~~~~------------~~g~~l~ld--g~~q~~~----------------------~d---   90 (314)
T 2b2c_A           50 LQVKKVLFHEKSKYQDVLVFEST------------TYGNVLVLD--GIVQATE----------------------RD---   90 (314)
T ss_dssp             EEEEEEEEEEECSSCEEEEEEET------------TTEEEEEET--TEEEEES----------------------SS---
T ss_pred             eecccEEEEEECCCCCEEEEEcC------------CCCEEEEEC--CEeecCC----------------------cc---
Confidence            56789999999999987777621            244555654  7888740                      11   


Q ss_pred             cchhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCC----C
Q 038592          235 LVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLE----D  309 (478)
Q Consensus       235 L~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~----~  309 (478)
                       .+.||++|++..++..+         .+.+||+||+|+|.++..+.++. ..+|++||+||.++++|+++|...    .
T Consensus        91 -e~~Y~e~l~~l~l~~~~---------~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~  160 (314)
T 2b2c_A           91 -EFSYQEMLAHLPMFAHP---------DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFS  160 (314)
T ss_dssp             -SSHHHHHHHHHHHHHSS---------SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGG
T ss_pred             -hhHHHHHHHHHHHhhCC---------CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccC
Confidence             57898876654333322         26899999999999999999886 579999999999999999999642    3


Q ss_pred             CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHH
Q 038592          310 GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVL  389 (478)
Q Consensus       310 d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl  389 (478)
                      ++|++++++|+.+++..                             ...+||+|++|..+..      .|+..+++.+|+
T Consensus       161 ~~rv~~~~~D~~~~l~~-----------------------------~~~~fD~Ii~d~~~~~------~~~~~l~t~~~l  205 (314)
T 2b2c_A          161 HPKLDLFCGDGFEFLKN-----------------------------HKNEFDVIITDSSDPV------GPAESLFGQSYY  205 (314)
T ss_dssp             CTTEEEECSCHHHHHHH-----------------------------CTTCEEEEEECCC-------------------HH
T ss_pred             CCCEEEEEChHHHHHHh-----------------------------cCCCceEEEEcCCCCC------CcchhhhHHHHH
Confidence            68999999999999865                             3567999999875432      255678889999


Q ss_pred             HHHHHccCcCcEEEEEeCCC--CchHHHHHHHHHHHhcCccEEE--eecc--cce-EEEEEEcCC
Q 038592          390 LAARLILSDFGIFVMNVIPP--NRSFYDMLIQEFRDVFQELYEI--DVGN--EEN-FVLIATGLS  447 (478)
Q Consensus       390 ~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~~~--~v~~--~~N-~Vl~a~~~~  447 (478)
                      +.++++|+|||+++++..+.  +......+.+.++++|+++..+  .++.  .++ .+++|++.+
T Consensus       206 ~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~iP~~~~g~~g~~~ask~~  270 (314)
T 2b2c_A          206 ELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVTYAQSIVSTYPSGSMGYLICAKNA  270 (314)
T ss_dssp             HHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEEEEEESST
T ss_pred             HHHHhhcCCCeEEEEECCCcccCHHHHHHHHHHHHHHCCcceEEEEEecCcCCCceEEEEEeCCC
Confidence            99999999999999997554  4556778899999999976433  3332  234 467777663

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.89  E-value=1.2e-21  Score=196.22  Aligned_cols=209  Identities=16%  Similarity=0.168  Sum_probs=155.3

Q ss_pred             ceeeEEEEeEecccCceEEEEEeeccccCCccccceeeEEEEeeCCCeEEeeeeecccccccccccccCCccccccCCcc
Q 038592          155 VVSSVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGV  234 (478)
Q Consensus       155 i~~r~vl~~~~S~~~g~~vVedv~~e~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~d~~~  234 (478)
                      +...+++++.+|+|+...|+++-            .+++.++++  +.+|+..                      .|   
T Consensus        32 ~~~~~~l~~~~s~~q~i~v~~~~------------~~g~~l~ld--g~~~~~~----------------------~d---   72 (296)
T 1inl_A           32 MKMNRVIYSGQSDIQRIDIFENP------------DLGVVFALD--GITMTTE----------------------KD---   72 (296)
T ss_dssp             EECSEEEEEEECSSCEEEEEEET------------TTEEEEEET--TEEEEET----------------------TT---
T ss_pred             eecccEEEEEECCCccEEEEEcC------------CCcEEEEEC--CEEeecc----------------------cc---
Confidence            56788999999999887777621            244455554  6788740                      11   


Q ss_pred             cchhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCC----CC
Q 038592          235 LVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGL----ED  309 (478)
Q Consensus       235 L~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~----~~  309 (478)
                       .+.||++|.+..++.++         .+.+||+||+|+|.++..+.++. ..+|++||+|+.++++|+++|..    ..
T Consensus        73 -e~~y~e~l~~~~l~~~~---------~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~  142 (296)
T 1inl_A           73 -EFMYHEMLAHVPMFLHP---------NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFD  142 (296)
T ss_dssp             -HHHHHHHHHHHHHHHSS---------SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGG
T ss_pred             -hhHHHHHHhHHHHhcCC---------CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccC
Confidence             57899988765444332         26799999999999999999885 57999999999999999999831    23


Q ss_pred             CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHH
Q 038592          310 GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVL  389 (478)
Q Consensus       310 d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl  389 (478)
                      +++++++++|+.+++..                             ...+||+|++|+.+.. .    .|+..+++.+|+
T Consensus       143 ~~~v~~~~~D~~~~l~~-----------------------------~~~~fD~Ii~d~~~~~-~----~~~~~l~~~~~l  188 (296)
T 1inl_A          143 DPRAEIVIANGAEYVRK-----------------------------FKNEFDVIIIDSTDPT-A----GQGGHLFTEEFY  188 (296)
T ss_dssp             CTTEEEEESCHHHHGGG-----------------------------CSSCEEEEEEEC---------------CCSHHHH
T ss_pred             CCceEEEECcHHHHHhh-----------------------------CCCCceEEEEcCCCcc-c----CchhhhhHHHHH
Confidence            68999999999999743                             3567999999976531 1    256678889999


Q ss_pred             HHHHHccCcCcEEEEEeCCC--CchHHHHHHHHHHHhcCccEEEe--ec---ccceEEEEEEcC
Q 038592          390 LAARLILSDFGIFVMNVIPP--NRSFYDMLIQEFRDVFQELYEID--VG---NEENFVLIATGL  446 (478)
Q Consensus       390 ~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~~~~--v~---~~~N~Vl~a~~~  446 (478)
                      +.++++|+|||+++++..++  +.+....+++.++++|+.+..+.  +.   .+.+.+++|++.
T Consensus       189 ~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~p~g~~~f~~as~~  252 (296)
T 1inl_A          189 QACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFMTTYPSGMWSYTFASKG  252 (296)
T ss_dssp             HHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEEEEECTTSTTSEEEEEEEESS
T ss_pred             HHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHHCCceEEEEeecCccCCCceEEEEecCC
Confidence            99999999999999998764  45667889999999999865443  33   334566788865

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.87  E-value=8.7e-21  Score=190.84  Aligned_cols=209  Identities=15%  Similarity=0.193  Sum_probs=150.3

Q ss_pred             ceeeEEEEeEecccCceEEEEEeeccccCCccccceeeEEEEeeCCCeEEeeeeecccccccccccccCCccccccCCcc
Q 038592          155 VVSSVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGV  234 (478)
Q Consensus       155 i~~r~vl~~~~S~~~g~~vVedv~~e~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~d~~~  234 (478)
                      +++.+++++.+|+|+...|+++-           .+-|.|++   ++.+|+.-                          .
T Consensus        37 ~~~~~~l~~~~s~~q~i~v~~~~-----------~~g~~L~l---dg~~~~~~--------------------------~   76 (304)
T 2o07_A           37 LQVEQLLHHRRSRYQDILVFRSK-----------TYGNVLVL---DGVIQCTE--------------------------R   76 (304)
T ss_dssp             EEEEEEEEEEECSSSEEEEEEES-----------SSCEEEEE---TTEEEEET--------------------------T
T ss_pred             EEeccEEEEEECCCcEEEEEEcC-----------CCceEEEE---CCEEEeec--------------------------c
Confidence            56789999999999887777631           12355555   37889740                          0


Q ss_pred             cchhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCC----CC
Q 038592          235 LVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGL----ED  309 (478)
Q Consensus       235 L~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~----~~  309 (478)
                      ..+.||++|.+..++..+         .+.+||+||+|+|.++..+.++. ..+|++||+|+.++++|+++|..    ..
T Consensus        77 de~~y~e~l~~~~l~~~~---------~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~  147 (304)
T 2o07_A           77 DEFSYQEMIANLPLCSHP---------NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYS  147 (304)
T ss_dssp             THHHHHHHHHHHHHTTSS---------SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGG
T ss_pred             cchHHHHHHHHHHHhhCC---------CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccC
Confidence            157898877654332221         36899999999999999999886 47999999999999999999853    13


Q ss_pred             CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHH
Q 038592          310 GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVL  389 (478)
Q Consensus       310 d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl  389 (478)
                      +++++++++|+.+++..                             ...+||+|++|.....      .|+..+.+.+|+
T Consensus       148 ~~rv~v~~~Da~~~l~~-----------------------------~~~~fD~Ii~d~~~~~------~~~~~l~~~~~l  192 (304)
T 2o07_A          148 SSKLTLHVGDGFEFMKQ-----------------------------NQDAFDVIITDSSDPM------GPAESLFKESYY  192 (304)
T ss_dssp             CTTEEEEESCHHHHHHT-----------------------------CSSCEEEEEEECC-----------------CHHH
T ss_pred             CCcEEEEECcHHHHHhh-----------------------------CCCCceEEEECCCCCC------CcchhhhHHHHH
Confidence            68999999999999854                             3567999999976432      245567789999


Q ss_pred             HHHHHccCcCcEEEEEeCCC--CchHHHHHHHHHHHhcCccEEE--eecc---cceEEEEEEcCC
Q 038592          390 LAARLILSDFGIFVMNVIPP--NRSFYDMLIQEFRDVFQELYEI--DVGN---EENFVLIATGLS  447 (478)
Q Consensus       390 ~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~~~--~v~~---~~N~Vl~a~~~~  447 (478)
                      +.++++|+|||+++++..+.  +....+.+.+.++++|+++...  .+..   +.-..++|++.+
T Consensus       193 ~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~~vP~~~~g~~g~~~as~~~  257 (304)
T 2o07_A          193 QLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVAYAYCTIPTYPSGQIGFMLCSKNP  257 (304)
T ss_dssp             HHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEEEEEESST
T ss_pred             HHHHhccCCCeEEEEecCCcccchHHHHHHHHHHHHhCCCceeEEEEeccccCcceEEEEEeCCc
Confidence            99999999999999987543  4566778899999999976333  2322   222346787664

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.87  E-value=2.5e-20  Score=188.86  Aligned_cols=209  Identities=19%  Similarity=0.234  Sum_probs=158.1

Q ss_pred             ceeeEEEEeEecccCceEEEEEeeccccCCccccceeeEEEEeeCCCeEEeeeeecccccccccccccCCccccccCCcc
Q 038592          155 VVSSVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGV  234 (478)
Q Consensus       155 i~~r~vl~~~~S~~~g~~vVedv~~e~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~d~~~  234 (478)
                      ++..+++++.+|+|+...+++.-           .+-|.|. .  .+.+|+.     .                 .|   
T Consensus        58 ~~~~~~l~~~~s~~q~i~v~~~~-----------~~g~~l~-l--dg~~~~~-----~-----------------~d---   98 (321)
T 2pt6_A           58 LKIKKILYETKSKYQNVLVFEST-----------TYGKVLV-L--DGVIQLT-----E-----------------KD---   98 (321)
T ss_dssp             EEEEEEEEEEECSSCEEEEEEES-----------SSCEEEE-E--TTEEEEE-----T-----------------TT---
T ss_pred             EecccEEEEEECCCceEEEEEcC-----------CCcEEEE-E--CCEeeeC-----c-----------------cc---
Confidence            67789999999999877666521           1234554 4  3677863     0                 12   


Q ss_pred             cchhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCC----C
Q 038592          235 LVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLE----D  309 (478)
Q Consensus       235 L~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~----~  309 (478)
                       .+.||++|++..++..+         .+.+||+||+|+|.++..+.+++ ..+|++||+||.++++|++++...    .
T Consensus        99 -e~~y~e~l~~~~l~~~~---------~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~  168 (321)
T 2pt6_A           99 -EFAYHEMMTHVPMTVSK---------EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYE  168 (321)
T ss_dssp             -HHHHHHHHHHHHHHHSS---------SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGG
T ss_pred             -chHHHHHHHHHHHhcCC---------CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccC
Confidence             57899987764333322         26899999999999999999886 579999999999999999998641    2


Q ss_pred             CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHH
Q 038592          310 GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVL  389 (478)
Q Consensus       310 d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl  389 (478)
                      +++++++++|+.+++..                             ...+||+|++|..+..      .|+..+++.+|+
T Consensus       169 ~~~v~~~~~D~~~~l~~-----------------------------~~~~fDvIi~d~~~p~------~~~~~l~~~~~l  213 (321)
T 2pt6_A          169 DKRVNVFIEDASKFLEN-----------------------------VTNTYDVIIVDSSDPI------GPAETLFNQNFY  213 (321)
T ss_dssp             STTEEEEESCHHHHHHH-----------------------------CCSCEEEEEEECCCSS------SGGGGGSSHHHH
T ss_pred             CCcEEEEEccHHHHHhh-----------------------------cCCCceEEEECCcCCC------CcchhhhHHHHH
Confidence            68999999999999865                             3567999999875432      145667889999


Q ss_pred             HHHHHccCcCcEEEEEeCCC--CchHHHHHHHHHHHhcCccEEE--eecc--cceE-EEEEEcCC
Q 038592          390 LAARLILSDFGIFVMNVIPP--NRSFYDMLIQEFRDVFQELYEI--DVGN--EENF-VLIATGLS  447 (478)
Q Consensus       390 ~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~~~--~v~~--~~N~-Vl~a~~~~  447 (478)
                      +.+++.|+|||+++++..++  +.+....+.+.++++|+.+..+  .+..  .+++ .++|++.+
T Consensus       214 ~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~f~~as~~~  278 (321)
T 2pt6_A          214 EKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGILCCSKTD  278 (321)
T ss_dssp             HHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTTCSEEEEEEEECTTSGGGEEEEEEEESST
T ss_pred             HHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCCeEEEEEEeccccCceEEEEEeeCCC
Confidence            99999999999999998665  5566788999999999976444  3332  3455 46788763

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.86  E-value=3.9e-20  Score=185.78  Aligned_cols=213  Identities=17%  Similarity=0.148  Sum_probs=155.5

Q ss_pred             ceeeEEEEeEecccCceEEEEEeeccccCCccccceeeEEEEeeCCCeEEeeeeecccccccccccccCCccccccCCcc
Q 038592          155 VVSSVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGV  234 (478)
Q Consensus       155 i~~r~vl~~~~S~~~g~~vVedv~~e~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~d~~~  234 (478)
                      +...+++++.+|+|+...|++.-   .++      .++++++++  +.+|+...                          
T Consensus        34 ~~~~~~l~~~~s~~q~i~v~~~~---p~g------~~g~~l~ld--g~~~~~~~--------------------------   76 (304)
T 3bwc_A           34 LRVEKVLYDAPTKFQHLTIFESD---PKG------PWGTVMALD--GCIQVTDY--------------------------   76 (304)
T ss_dssp             EEEEEEEEEEECSSSEEEEEEEC---TTS------SCCEEEEET--TEEEEETT--------------------------
T ss_pred             EecccEEEEeECCCCCEEEEEec---CCC------ccceEEEEC--Ceeeeecc--------------------------
Confidence            56789999999999887777631   111      355556664  68897510                          


Q ss_pred             cchhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcC----CCC
Q 038592          235 LVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFG----LED  309 (478)
Q Consensus       235 L~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg----~~~  309 (478)
                      ..+.|+++|.+..++..+         .+.+||+||+|+|.++..+.++. ..+|++||+|+.++++|++++.    ...
T Consensus        77 de~~y~e~l~~~~l~~~~---------~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~  147 (304)
T 3bwc_A           77 DEFVYHEVLGHTSLCSHP---------KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLA  147 (304)
T ss_dssp             THHHHHHHHHHHHHTTSS---------SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGG
T ss_pred             cchHHHHHHhhhhhhcCC---------CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccC
Confidence            157899888765333221         36899999999999999999886 4799999999999999999982    124


Q ss_pred             CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHH
Q 038592          310 GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVL  389 (478)
Q Consensus       310 d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl  389 (478)
                      +++++++++|+.+++.+                            ....+||+|++|.....      .|+..+++.+|+
T Consensus       148 ~~~v~~~~~D~~~~~~~----------------------------~~~~~fDvIi~d~~~~~------~~~~~l~~~~~l  193 (304)
T 3bwc_A          148 DPRATVRVGDGLAFVRQ----------------------------TPDNTYDVVIIDTTDPA------GPASKLFGEAFY  193 (304)
T ss_dssp             CTTEEEEESCHHHHHHS----------------------------SCTTCEEEEEEECC---------------CCHHHH
T ss_pred             CCcEEEEECcHHHHHHh----------------------------ccCCceeEEEECCCCcc------ccchhhhHHHHH
Confidence            68999999999999743                            03567999999875532      256778889999


Q ss_pred             HHHHHccCcCcEEEEEeCCC--CchHHHHHHHHHHHh-cCccEEEe--ec---ccceEEEEEEcCC
Q 038592          390 LAARLILSDFGIFVMNVIPP--NRSFYDMLIQEFRDV-FQELYEID--VG---NEENFVLIATGLS  447 (478)
Q Consensus       390 ~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~v-F~~v~~~~--v~---~~~N~Vl~a~~~~  447 (478)
                      +.++++|+|||+++++..++  .....+.+.+.|+++ |+.+..+.  +.   .+....++|++.+
T Consensus       194 ~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~~~~vP~yp~g~w~f~~as~~~  259 (304)
T 3bwc_A          194 KDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYALMHVPTYPCGSIGTLVCSKKA  259 (304)
T ss_dssp             HHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEEECCCTTSTTSCCEEEEEESSS
T ss_pred             HHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEEEeecccccCcceEEEEEeCCc
Confidence            99999999999999998764  445677889999999 99775554  22   2233456788764

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.85  E-value=1e-20  Score=186.59  Aligned_cols=194  Identities=11%  Similarity=-0.003  Sum_probs=148.8

Q ss_pred             ceeeEEEEeEecccCceEEEEEeeccccCCccccceeeEEEEeeCCCeEEeeeeecccccccccccccCCccccccCCcc
Q 038592          155 VVSSVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGV  234 (478)
Q Consensus       155 i~~r~vl~~~~S~~~g~~vVedv~~e~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~d~~~  234 (478)
                      +++++++++++|+|+...|+++-            .++++++++  +. ||..                      .|   
T Consensus        15 ~~~~~vl~~~~s~~q~i~v~~~~------------~~g~~l~ld--g~-q~~~----------------------~d---   54 (262)
T 2cmg_A           15 YTIEAKLLDVRSEHNILEIFKSK------------DFGEIAMLN--RQ-LLFK----------------------NF---   54 (262)
T ss_dssp             EECSEEEEEEECSSCEEEEEEET------------TTEEEEEET--TE-EEEG----------------------GG---
T ss_pred             EEEeeEEEeeECCCceEEEEECC------------CccEEEEEc--Cc-cccc----------------------ch---
Confidence            56789999999999988887721            244445553  66 8751                      01   


Q ss_pred             cchhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC----CC
Q 038592          235 LVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE----DG  310 (478)
Q Consensus       235 L~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~----~d  310 (478)
                       .+.||++|.+..++.++         .+.+||+||+|+|.+++.+.++ +.+|++||+||.|+++|+++|...    .+
T Consensus        55 -~~~y~e~l~~~~~~~~~---------~~~~VL~iG~G~G~~~~~ll~~-~~~v~~veid~~~i~~ar~~~~~~~~~~~~  123 (262)
T 2cmg_A           55 -LHIESELLAHMGGCTKK---------ELKEVLIVDGFDLELAHQLFKY-DTHIDFVQADEKILDSFISFFPHFHEVKNN  123 (262)
T ss_dssp             -THHHHHHHHHHHHTTSS---------CCCEEEEESSCCHHHHHHHTTS-SCEEEEECSCHHHHGGGTTTSTTHHHHHTC
T ss_pred             -HHHHHHHHHHHhhhcCC---------CCCEEEEEeCCcCHHHHHHHhC-CCEEEEEECCHHHHHHHHHHHHhhccccCC
Confidence             57899988876544332         3689999999999999988888 489999999999999999998541    46


Q ss_pred             CCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHH
Q 038592          311 EFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLL  390 (478)
Q Consensus       311 ~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~  390 (478)
                      +|++++++||.+|+                                 .+||+|++|..  +        |     ..|++
T Consensus       124 ~rv~~~~~D~~~~~---------------------------------~~fD~Ii~d~~--d--------p-----~~~~~  155 (262)
T 2cmg_A          124 KNFTHAKQLLDLDI---------------------------------KKYDLIFCLQE--P--------D-----IHRID  155 (262)
T ss_dssp             TTEEEESSGGGSCC---------------------------------CCEEEEEESSC--C--------C-----HHHHH
T ss_pred             CeEEEEechHHHHH---------------------------------hhCCEEEECCC--C--------h-----HHHHH
Confidence            89999999998873                                 46999999842  2        2     23999


Q ss_pred             HHHHccCcCcEEEEEeCCC--CchHHHHHHHHHHHhcCccEEEee--c-ccceEEEEEEcCC
Q 038592          391 AARLILSDFGIFVMNVIPP--NRSFYDMLIQEFRDVFQELYEIDV--G-NEENFVLIATGLS  447 (478)
Q Consensus       391 ~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~~~~v--~-~~~N~Vl~a~~~~  447 (478)
                      .+++.|+|||+++++..++  +......+.++++++|+.+..+..  + .+.+.+++|++.+
T Consensus       156 ~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~~~~~~~~vP~~g~~~~~~as~~~  217 (262)
T 2cmg_A          156 GLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGGVFSVAMPFVAPLRILSNKGYIYASFKT  217 (262)
T ss_dssp             HHHTTEEEEEEEEEEEECTTTCHHHHHHHHHHHHTTCSEEEEECCTTCTTCCEEEEEEESSC
T ss_pred             HHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHhCCceEEEEEccCCCcccEEEEeeCCC
Confidence            9999999999999987665  445677889999999998755542  2 3456667898763

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.83  E-value=3.7e-19  Score=181.40  Aligned_cols=209  Identities=15%  Similarity=0.207  Sum_probs=154.0

Q ss_pred             ceeeEEEEeEecccCceEEEEEeeccccCCccccceeeEEEEeeCCCeEEeeeeecccccccccccccCCccccccCCcc
Q 038592          155 VVSSVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGV  234 (478)
Q Consensus       155 i~~r~vl~~~~S~~~g~~vVedv~~e~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~d~~~  234 (478)
                      +++.+++++.+|+|+...+++.            ..+.+.+++  .+.+|+.     .                 .|   
T Consensus        62 ~~v~~vl~~~~s~~q~I~v~~~------------~~~g~~l~l--dg~~~~~-----~-----------------~d---  102 (334)
T 1xj5_A           62 LKVEKVLFQGKSDYQDVIVFQS------------ATYGKVLVL--DGVIQLT-----E-----------------RD---  102 (334)
T ss_dssp             EEEEEEEEEEECSSCEEEEEEE------------SSSCEEEEE--TTEEEEE-----T-----------------TT---
T ss_pred             EEeeeEEEEeecCCeEEEEEEc------------CCCCeEEEE--CCEeecC-----c-----------------Cc---
Confidence            6778999999999998878772            134444444  3678863     0                 12   


Q ss_pred             cchhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCC----CC
Q 038592          235 LVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGL----ED  309 (478)
Q Consensus       235 L~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~----~~  309 (478)
                       .+.||++|++..++..         ..+.+||+||+|+|.++..|.++. ..+|++||+|+.++++|+++|..    ..
T Consensus       103 -e~~y~e~L~~l~l~~~---------~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~  172 (334)
T 1xj5_A          103 -ECAYQEMITHLPLCSI---------PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYE  172 (334)
T ss_dssp             -HHHHHHHHHHHHHTTS---------SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGG
T ss_pred             -chHHHHHHHHHHHhhC---------CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccC
Confidence             6889998776433222         136899999999999999999886 47999999999999999999842    13


Q ss_pred             CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHH
Q 038592          310 GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVL  389 (478)
Q Consensus       310 d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl  389 (478)
                      +++++++++|+.+++...                            ...+||+|++|.....      .++..++..+|+
T Consensus       173 ~~rv~~~~~D~~~~l~~~----------------------------~~~~fDlIi~d~~~p~------~~~~~l~~~~~l  218 (334)
T 1xj5_A          173 DPRVNLVIGDGVAFLKNA----------------------------AEGSYDAVIVDSSDPI------GPAKELFEKPFF  218 (334)
T ss_dssp             STTEEEEESCHHHHHHTS----------------------------CTTCEEEEEECCCCTT------SGGGGGGSHHHH
T ss_pred             CCcEEEEECCHHHHHHhc----------------------------cCCCccEEEECCCCcc------CcchhhhHHHHH
Confidence            579999999999998541                            2467999999875432      134556789999


Q ss_pred             HHHHHccCcCcEEEEEeCCC--CchHHHHHHHHHHHhcCccE---EEeeccc---ceEEEEEEcC
Q 038592          390 LAARLILSDFGIFVMNVIPP--NRSFYDMLIQEFRDVFQELY---EIDVGNE---ENFVLIATGL  446 (478)
Q Consensus       390 ~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~---~~~v~~~---~N~Vl~a~~~  446 (478)
                      +.++++|+|||+++++..+.  .....+.++++++++|+.+.   ...+...   .-..++|++.
T Consensus       219 ~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~~~~~~~~~vP~y~~g~~gf~~as~~  283 (334)
T 1xj5_A          219 QSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIFKGSVNYAWTSVPTYPSGVIGFMLCSTE  283 (334)
T ss_dssp             HHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSSCEEEEEEECTTSGGGEEEEEEEECS
T ss_pred             HHHHHhcCCCcEEEEecCCccccHHHHHHHHHHHHHhCccccceEEEeCCcccCCceEEEEcccC
Confidence            99999999999999985443  45556778899999999533   2233332   2345677764

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.28  E-value=3.2e-12  Score=128.00  Aligned_cols=143  Identities=16%  Similarity=0.140  Sum_probs=100.3

Q ss_pred             CCCeEEEEeCchhHHH-HHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          262 FRPKALCVGVGGGALV-SFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       262 ~~~~VLvIGlGgG~L~-~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      .+.+||.||+|.|.++ ..+.+.++.+|++||+||++++.|++.+.-..-++++++.+|+.++                 
T Consensus       122 ~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l-----------------  184 (298)
T 3fpf_A          122 RGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVI-----------------  184 (298)
T ss_dssp             TTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGG-----------------
T ss_pred             CcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhC-----------------
Confidence            3679999999977654 4555556899999999999999999986311116899999999875                 


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchH-HHHHHH
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSF-YDMLIQ  419 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~-~~~v~~  419 (478)
                                     ++..||+|+++...         +    -...+++.+++.|+|||.++++.......+ +..+..
T Consensus       185 ---------------~d~~FDvV~~~a~~---------~----d~~~~l~el~r~LkPGG~Lvv~~~~~~r~~l~~~v~~  236 (298)
T 3fpf_A          185 ---------------DGLEFDVLMVAALA---------E----PKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSD  236 (298)
T ss_dssp             ---------------GGCCCSEEEECTTC---------S----CHHHHHHHHHHHCCTTCEEEEEECCGGGGGSSCCCCT
T ss_pred             ---------------CCCCcCEEEECCCc---------c----CHHHHHHHHHHHcCCCcEEEEEcCcchhhhccccCCh
Confidence                           24579999995421         1    237899999999999999999775432221 111112


Q ss_pred             HHHHhcCccEEE-eecccceEEEEEEcCCCC
Q 038592          420 EFRDVFQELYEI-DVGNEENFVLIATGLSIV  449 (478)
Q Consensus       420 ~l~~vF~~v~~~-~v~~~~N~Vl~a~~~~~~  449 (478)
                      ...+-|..+..+ +.++..|.|+++++....
T Consensus       237 ~~~~gf~~~~~~~p~~~v~N~vv~a~k~~~~  267 (298)
T 3fpf_A          237 DDITGFRRAGVVLPSGKVNNTSVLVFKCPDK  267 (298)
T ss_dssp             GGGTTEEEEEEECCCTTCCCEEEEEEECC--
T ss_pred             hhhhhhhheeEECCCCCcCcEEEEEEccCCc
Confidence            234467655544 345557999999877653

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.23  E-value=4.1e-10  Score=106.03  Aligned_cols=106  Identities=21%  Similarity=0.210  Sum_probs=86.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      +.+||.||+|.|.++.++.+.+  +.+|++||+++.+++.|++++... ..++++++++|+.+++......         
T Consensus        59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~---------  129 (223)
T 3duw_A           59 ARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENE---------  129 (223)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHT---------
T ss_pred             CCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhc---------
Confidence            5799999999999999998875  579999999999999999887422 2467999999999988764321         


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                      ...+||+|++|....             ....+++.+.+.|+|||+++++-
T Consensus       130 ----------------~~~~fD~v~~d~~~~-------------~~~~~l~~~~~~L~pgG~lv~~~  167 (223)
T 3duw_A          130 ----------------KYEPFDFIFIDADKQ-------------NNPAYFEWALKLSRPGTVIIGDN  167 (223)
T ss_dssp             ----------------TCCCCSEEEECSCGG-------------GHHHHHHHHHHTCCTTCEEEEES
T ss_pred             ----------------CCCCcCEEEEcCCcH-------------HHHHHHHHHHHhcCCCcEEEEeC
Confidence                            225799999975311             23689999999999999999853

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.22  E-value=2.2e-11  Score=117.09  Aligned_cols=107  Identities=17%  Similarity=0.032  Sum_probs=86.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.||+|.|.++.++.++...++++||++|.|++.|++++.- ...+++++.+|+.+.+..                
T Consensus        61 G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~-~~~~~~~~~~~a~~~~~~----------------  123 (236)
T 3orh_A           61 GGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPR-QTHKVIPLKGLWEDVAPT----------------  123 (236)
T ss_dssp             CEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGG-CSSEEEEEESCHHHHGGG----------------
T ss_pred             CCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhh-CCCceEEEeehHHhhccc----------------
Confidence            469999999999999999887667999999999999999998753 346789999999887643                


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC-ChHHHHHHHHHccCcCcEEEE
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF-VRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f-~~~efl~~~~~~L~~~Gilv~  404 (478)
                                  ..+..||.|+.|.......      ..++ ....+++.++++|+|||+|++
T Consensus       124 ------------~~~~~FD~i~~D~~~~~~~------~~~~~~~~~~~~e~~rvLkPGG~l~f  168 (236)
T 3orh_A          124 ------------LPDGHFDGILYDTYPLSEE------TWHTHQFNFIKNHAFRLLKPGGVLTY  168 (236)
T ss_dssp             ------------SCTTCEEEEEECCCCCBGG------GTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred             ------------ccccCCceEEEeeeecccc------hhhhcchhhhhhhhhheeCCCCEEEE
Confidence                        2567899999987654321      1222 346789999999999999986

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.22  E-value=2.2e-11  Score=116.39  Aligned_cols=102  Identities=13%  Similarity=0.236  Sum_probs=84.2

Q ss_pred             CeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCC-CC-CCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          264 PKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLE-DG-EFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       264 ~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~-~d-~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      .+||.||+|+|..+.++.+.+  +.+|++||+++.+++.|++++... .. ++++++++|+.+++...            
T Consensus        58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~------------  125 (221)
T 3dr5_A           58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRL------------  125 (221)
T ss_dssp             CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGS------------
T ss_pred             CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHh------------
Confidence            499999999999999998864  589999999999999999988532 23 58999999999987541            


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE-Ee
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM-NV  406 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~-N~  406 (478)
                                      ...+||+|++|....             ....+++.+.+.|+|||++++ |+
T Consensus       126 ----------------~~~~fD~V~~d~~~~-------------~~~~~l~~~~~~LkpGG~lv~dn~  164 (221)
T 3dr5_A          126 ----------------ANDSYQLVFGQVSPM-------------DLKALVDAAWPLLRRGGALVLADA  164 (221)
T ss_dssp             ----------------CTTCEEEEEECCCTT-------------THHHHHHHHHHHEEEEEEEEETTT
T ss_pred             ----------------cCCCcCeEEEcCcHH-------------HHHHHHHHHHHHcCCCcEEEEeCC
Confidence                            256799999985322             126799999999999999998 44

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.18  E-value=1.4e-10  Score=112.66  Aligned_cols=107  Identities=12%  Similarity=0.162  Sum_probs=85.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      +.+||.||+|+|..+.++.+.+  +.+|++||+++.+++.|++++... .+++++++++|+.+++.......        
T Consensus        80 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~--------  151 (247)
T 1sui_A           80 AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDE--------  151 (247)
T ss_dssp             CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSG--------
T ss_pred             cCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhcc--------
Confidence            6799999999999999998875  589999999999999999987422 24689999999999987642200        


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                     ....+||+|++|.+..             ....+++.+.++|+|||++++.
T Consensus       152 ---------------~~~~~fD~V~~d~~~~-------------~~~~~l~~~~~~LkpGG~lv~d  189 (247)
T 1sui_A          152 ---------------KNHGSYDFIFVDADKD-------------NYLNYHKRLIDLVKVGGVIGYD  189 (247)
T ss_dssp             ---------------GGTTCBSEEEECSCST-------------THHHHHHHHHHHBCTTCCEEEE
T ss_pred             ---------------CCCCCEEEEEEcCchH-------------HHHHHHHHHHHhCCCCeEEEEe
Confidence                           0146799999985421             2378999999999999999983

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.18  E-value=6.3e-11  Score=114.00  Aligned_cols=107  Identities=16%  Similarity=0.173  Sum_probs=86.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      +.+||.||+|.|..+.++.+.+  +.+|++||+++.+++.|++++... ..++++++++|+.+++......         
T Consensus        71 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~---------  141 (237)
T 3c3y_A           71 AKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQG---------  141 (237)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHS---------
T ss_pred             CCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhc---------
Confidence            6799999999999999998874  589999999999999999987421 2468999999999998764321         


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                    .....+||+|++|.+..             ....+++.+.++|+|||++++.
T Consensus       142 --------------~~~~~~fD~I~~d~~~~-------------~~~~~l~~~~~~L~pGG~lv~d  180 (237)
T 3c3y_A          142 --------------QESEGSYDFGFVDADKP-------------NYIKYHERLMKLVKVGGIVAYD  180 (237)
T ss_dssp             --------------TTCTTCEEEEEECSCGG-------------GHHHHHHHHHHHEEEEEEEEEE
T ss_pred             --------------cCCCCCcCEEEECCchH-------------HHHHHHHHHHHhcCCCeEEEEe
Confidence                          00146799999985321             2378999999999999999983

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.18  E-value=5.7e-11  Score=109.88  Aligned_cols=157  Identities=14%  Similarity=0.103  Sum_probs=88.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      +.+||.+|+|+|.++..+.+.. +.++++||+++.+++.|++.+..... +++++++|+.+.+.....            
T Consensus        31 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~------------   97 (215)
T 4dzr_A           31 GTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA-VVDWAAADGIEWLIERAE------------   97 (215)
T ss_dssp             TEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------CCHHHHHHHHHHHHH------------
T ss_pred             CCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC-ceEEEEcchHhhhhhhhh------------
Confidence            5799999999999999998876 57999999999999999988764333 789999999997654211            


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCC-----------------hHHHHHHHHHccCcCcE-EE
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFV-----------------RKDVLLAARLILSDFGI-FV  403 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~-----------------~~efl~~~~~~L~~~Gi-lv  403 (478)
                                    ...+||+|++|..-.... .+...+....                 -..+++.+++.|+|||. ++
T Consensus        98 --------------~~~~fD~i~~npp~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  162 (215)
T 4dzr_A           98 --------------RGRPWHAIVSNPPYIPTG-EIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVF  162 (215)
T ss_dssp             --------------TTCCBSEEEECCCCCC-------------------------CTTHHHHHHHTCCGGGBCSSSEEEE
T ss_pred             --------------ccCcccEEEECCCCCCCc-cccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEE
Confidence                          346899999963211000 0000000100                 07889999999999999 66


Q ss_pred             EEeCCCCchHHHHHHHHHHHhcCccEEEeecccceEEEEEEcCC
Q 038592          404 MNVIPPNRSFYDMLIQEFRDVFQELYEIDVGNEENFVLIATGLS  447 (478)
Q Consensus       404 ~N~~~~~~~~~~~v~~~l~~vF~~v~~~~v~~~~N~Vl~a~~~~  447 (478)
                      +.+.....+....++..++.-|..+.......+...++++.+..
T Consensus       163 ~~~~~~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~~~~~~  206 (215)
T 4dzr_A          163 LEVGHNQADEVARLFAPWRERGFRVRKVKDLRGIDRVIAVTREP  206 (215)
T ss_dssp             EECTTSCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEEEEECC
T ss_pred             EEECCccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEEEEEcC
Confidence            66654443333333332234466555555444456777776543

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.16  E-value=1.9e-10  Score=111.24  Aligned_cols=104  Identities=23%  Similarity=0.250  Sum_probs=84.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      +.+||.||+|.|..+..+.+.+  +.+|++||+++.+++.|++++... ..++++++++|+.+++...            
T Consensus        64 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~------------  131 (248)
T 3tfw_A           64 AKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESL------------  131 (248)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTC------------
T ss_pred             CCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhc------------
Confidence            5799999999999999998875  579999999999999999987422 2358999999999987541            


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                     ....+||+|++|....             ....+++.+.+.|+|||+++++-
T Consensus       132 ---------------~~~~~fD~V~~d~~~~-------------~~~~~l~~~~~~LkpGG~lv~~~  170 (248)
T 3tfw_A          132 ---------------GECPAFDLIFIDADKP-------------NNPHYLRWALRYSRPGTLIIGDN  170 (248)
T ss_dssp             ---------------CSCCCCSEEEECSCGG-------------GHHHHHHHHHHTCCTTCEEEEEC
T ss_pred             ---------------CCCCCeEEEEECCchH-------------HHHHHHHHHHHhcCCCeEEEEeC
Confidence                           1235899999976311             23679999999999999999843

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.15  E-value=3.5e-10  Score=102.62  Aligned_cols=139  Identities=17%  Similarity=0.202  Sum_probs=103.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCC--CeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGE--FLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~--rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.+|+|.|.++..+.+. +.+++++|+++.+++.|++.+....-+  +++++.+|..+.+                
T Consensus        53 ~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----------------  115 (194)
T 1dus_A           53 DDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENV----------------  115 (194)
T ss_dssp             TCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTC----------------
T ss_pred             CCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccc----------------
Confidence            569999999999999988887 789999999999999999887432222  5999999987652                


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHH
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQE  420 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~  420 (478)
                                     ...+||+|+++..       ..  ...-....+++.+++.|+|||.+++......  ....+.+.
T Consensus       116 ---------------~~~~~D~v~~~~~-------~~--~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~--~~~~~~~~  169 (194)
T 1dus_A          116 ---------------KDRKYNKIITNPP-------IR--AGKEVLHRIIEEGKELLKDNGEIWVVIQTKQ--GAKSLAKY  169 (194)
T ss_dssp             ---------------TTSCEEEEEECCC-------ST--TCHHHHHHHHHHHHHHEEEEEEEEEEEESTH--HHHHHHHH
T ss_pred             ---------------ccCCceEEEECCC-------cc--cchhHHHHHHHHHHHHcCCCCEEEEEECCCC--ChHHHHHH
Confidence                           3457999999521       00  0001236899999999999999998887652  23457788


Q ss_pred             HHHhcCccEEEeecccceEEEEEEc
Q 038592          421 FRDVFQELYEIDVGNEENFVLIATG  445 (478)
Q Consensus       421 l~~vF~~v~~~~v~~~~N~Vl~a~~  445 (478)
                      +++.|..+..+...+ ...++.+.+
T Consensus       170 l~~~~~~~~~~~~~~-~~~~~~~~k  193 (194)
T 1dus_A          170 MKDVFGNVETVTIKG-GYRVLKSKK  193 (194)
T ss_dssp             HHHHHSCCEEEEEET-TEEEEEEEC
T ss_pred             HHHHhcceEEEecCC-cEEEEEEee
Confidence            888898877665333 456666653

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.15  E-value=1.3e-10  Score=111.09  Aligned_cols=100  Identities=20%  Similarity=0.274  Sum_probs=83.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHH-HHHhhhcCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLE-KLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~-~~~~~~~~~~~~~~  339 (478)
                      +.+||.||+|.|.++.++.+.. +.+|++||+++.+++.|++++... ..++++++++|+.+++. .             
T Consensus        72 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-------------  138 (232)
T 3ntv_A           72 VKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENV-------------  138 (232)
T ss_dssp             CCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHH-------------
T ss_pred             CCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhh-------------
Confidence            5799999999999999998865 689999999999999999987432 23589999999998875 4             


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                      ...+||+|++|....             ....+++.+.+.|+|||++++
T Consensus       139 ----------------~~~~fD~V~~~~~~~-------------~~~~~l~~~~~~LkpgG~lv~  174 (232)
T 3ntv_A          139 ----------------NDKVYDMIFIDAAKA-------------QSKKFFEIYTPLLKHQGLVIT  174 (232)
T ss_dssp             ----------------TTSCEEEEEEETTSS-------------SHHHHHHHHGGGEEEEEEEEE
T ss_pred             ----------------ccCCccEEEEcCcHH-------------HHHHHHHHHHHhcCCCeEEEE
Confidence                            246799999985321             236799999999999999998

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.14  E-value=4e-10  Score=103.71  Aligned_cols=107  Identities=16%  Similarity=0.052  Sum_probs=85.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.+|+|+|.++..+......+|++||+|+.+++.|++.+....-++++++.+|+.++....               
T Consensus        45 ~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~---------------  109 (189)
T 3p9n_A           45 GLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAG---------------  109 (189)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHC---------------
T ss_pred             CCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhc---------------
Confidence            56999999999999987776545699999999999999998764222257999999999997541               


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC---ChHHHHHHHHH--ccCcCcEEEEEeCCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF---VRKDVLLAARL--ILSDFGIFVMNVIPP  409 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f---~~~efl~~~~~--~L~~~Gilv~N~~~~  409 (478)
                                   ...+||+|++|.            |-..   ...++++.+.+  .|+|||++++....+
T Consensus       110 -------------~~~~fD~i~~~~------------p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~  156 (189)
T 3p9n_A          110 -------------TTSPVDLVLADP------------PYNVDSADVDAILAALGTNGWTREGTVAVVERATT  156 (189)
T ss_dssp             -------------CSSCCSEEEECC------------CTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred             -------------cCCCccEEEECC------------CCCcchhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence                         356899999963            2222   24678999998  999999999977655

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.13  E-value=1e-10  Score=113.26  Aligned_cols=108  Identities=20%  Similarity=0.289  Sum_probs=86.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      +.+||.||+|+|..+.++.+..  +.+|++||+++.+++.|++++... ..++++++++|+.+++.......        
T Consensus        61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~--------  132 (242)
T 3r3h_A           61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEG--------  132 (242)
T ss_dssp             CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHH--------
T ss_pred             cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhcc--------
Confidence            6799999999999999999875  579999999999999999987422 24689999999999987643210        


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE-EeC
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM-NVI  407 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~-N~~  407 (478)
                                      ...+||+|++|....             ....+|+.+.+.|+|||++++ |+.
T Consensus       133 ----------------~~~~fD~V~~d~~~~-------------~~~~~l~~~~~~LkpGG~lv~d~~~  172 (242)
T 3r3h_A          133 ----------------GEHQFDFIFIDADKT-------------NYLNYYELALKLVTPKGLIAIDNIF  172 (242)
T ss_dssp             ----------------CSSCEEEEEEESCGG-------------GHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred             ----------------CCCCEeEEEEcCChH-------------HhHHHHHHHHHhcCCCeEEEEECCc
Confidence                            246799999986421             236799999999999999998 443

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.11  E-value=1.8e-10  Score=107.74  Aligned_cols=100  Identities=18%  Similarity=0.206  Sum_probs=82.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      +.+||.||+|.|..+.++.+..  +.+|++||+++.+++.|++++... ..++++++.+|+.+++..             
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-------------  123 (210)
T 3c3p_A           57 PQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAG-------------  123 (210)
T ss_dssp             CSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTT-------------
T ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhcc-------------
Confidence            5799999999999999998875  579999999999999999887421 235799999999988632             


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                      ... ||+|++|....             ....+++.+++.|+|||++++.
T Consensus       124 ----------------~~~-fD~v~~~~~~~-------------~~~~~l~~~~~~LkpgG~lv~~  159 (210)
T 3c3p_A          124 ----------------QRD-IDILFMDCDVF-------------NGADVLERMNRCLAKNALLIAV  159 (210)
T ss_dssp             ----------------CCS-EEEEEEETTTS-------------CHHHHHHHHGGGEEEEEEEEEE
T ss_pred             ----------------CCC-CCEEEEcCChh-------------hhHHHHHHHHHhcCCCeEEEEE
Confidence                            235 99999984321             2478999999999999999983

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.10  E-value=3.5e-10  Score=106.48  Aligned_cols=106  Identities=17%  Similarity=0.235  Sum_probs=84.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      +.+||.||+|.|..+.++.+.+  +.+|++||+++.+++.|++.+... ..++++++++|+.+++......         
T Consensus        65 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~---------  135 (225)
T 3tr6_A           65 AKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHA---------  135 (225)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTT---------
T ss_pred             CCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhc---------
Confidence            5799999999999999998875  579999999999999999987422 2467999999999988663210         


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                     ....+||+|++|....             ....+++.+++.|+|||++++.
T Consensus       136 ---------------~~~~~fD~v~~~~~~~-------------~~~~~l~~~~~~L~pgG~lv~~  173 (225)
T 3tr6_A          136 ---------------GQAWQYDLIYIDADKA-------------NTDLYYEESLKLLREGGLIAVD  173 (225)
T ss_dssp             ---------------TCTTCEEEEEECSCGG-------------GHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ---------------cCCCCccEEEECCCHH-------------HHHHHHHHHHHhcCCCcEEEEe
Confidence                           0126799999975311             2367999999999999999984

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.08  E-value=6.4e-10  Score=104.99  Aligned_cols=106  Identities=25%  Similarity=0.224  Sum_probs=84.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      +.+||.||+|.|.++..+.+.+  +.+|++||+++.+++.|++++... ..++++++.+|+.+++.+....         
T Consensus        70 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~---------  140 (229)
T 2avd_A           70 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAA---------  140 (229)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHT---------
T ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhc---------
Confidence            5799999999999999998875  579999999999999999987422 2468999999999988764320         


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                     ....+||+|++|....             ....+++.+.+.|+|||++++.
T Consensus       141 ---------------~~~~~~D~v~~d~~~~-------------~~~~~l~~~~~~L~pgG~lv~~  178 (229)
T 2avd_A          141 ---------------GEAGTFDVAVVDADKE-------------NCSAYYERCLQLLRPGGILAVL  178 (229)
T ss_dssp             ---------------TCTTCEEEEEECSCST-------------THHHHHHHHHHHEEEEEEEEEE
T ss_pred             ---------------CCCCCccEEEECCCHH-------------HHHHHHHHHHHHcCCCeEEEEE
Confidence                           0125799999975311             2368999999999999999983

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.07  E-value=5.7e-10  Score=106.72  Aligned_cols=105  Identities=23%  Similarity=0.321  Sum_probs=85.1

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      +.+||.||+|.|..+.++...+  +.+|++||+++..++.|++++... ..++++++++|+.+++.+...          
T Consensus        73 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~----------  142 (232)
T 3cbg_A           73 AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQ----------  142 (232)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHT----------
T ss_pred             CCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHh----------
Confidence            5799999999999999998875  479999999999999999987321 235799999999998876431          


Q ss_pred             CcccccCCCccCCCCCCC--CceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592          340 GACSLKDGNFLDNSDRVD--NKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~--~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                      .+  ..||+|++|....             ....+++.+.+.|+|||++++.-
T Consensus       143 ----------------~~~~~~fD~V~~d~~~~-------------~~~~~l~~~~~~LkpgG~lv~~~  182 (232)
T 3cbg_A          143 ----------------GKPLPEFDLIFIDADKR-------------NYPRYYEIGLNLLRRGGLMVIDN  182 (232)
T ss_dssp             ----------------SSSCCCEEEEEECSCGG-------------GHHHHHHHHHHTEEEEEEEEEEC
T ss_pred             ----------------cCCCCCcCEEEECCCHH-------------HHHHHHHHHHHHcCCCeEEEEeC
Confidence                            12  6799999985311             23679999999999999999853

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.07  E-value=3.3e-10  Score=107.08  Aligned_cols=109  Identities=11%  Similarity=0.133  Sum_probs=81.6

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      +.+||.||+|.|.++.++.+.+  +.+|++||++|.+++.|++++... ..++++++++|+.+++.....          
T Consensus        59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~----------  128 (221)
T 3u81_A           59 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKK----------  128 (221)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTT----------
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHH----------
Confidence            5799999999999999998864  579999999999999999976421 245799999999998754210          


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                    .....+||+|++|.....          ..-..++++.+ +.|+|||++++.-
T Consensus       129 --------------~~~~~~fD~V~~d~~~~~----------~~~~~~~~~~~-~~LkpgG~lv~~~  170 (221)
T 3u81_A          129 --------------KYDVDTLDMVFLDHWKDR----------YLPDTLLLEKC-GLLRKGTVLLADN  170 (221)
T ss_dssp             --------------TSCCCCCSEEEECSCGGG----------HHHHHHHHHHT-TCCCTTCEEEESC
T ss_pred             --------------hcCCCceEEEEEcCCccc----------chHHHHHHHhc-cccCCCeEEEEeC
Confidence                          001267999999753211          01123567777 9999999999843

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.04  E-value=4.4e-09  Score=100.55  Aligned_cols=116  Identities=19%  Similarity=0.213  Sum_probs=84.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      +.+||.||+|.|.++..+.+..  +.+|++||+++.+++.|++++... ..++++++.+|+.+++.+.....  ..+   
T Consensus        61 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~--~~~---  135 (239)
T 2hnk_A           61 AKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSK--SAP---  135 (239)
T ss_dssp             CSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCS--SCC---
T ss_pred             cCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhc--ccc---
Confidence            5799999999999999998875  579999999999999999987421 23579999999999876532100  000   


Q ss_pred             CcccccCCCccCCCCCCC--CceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592          340 GACSLKDGNFLDNSDRVD--NKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~--~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                .-.+....  .+||+|++|....             .-..+++.+.+.|+|||++++..
T Consensus       136 ----------~~~~~f~~~~~~fD~I~~~~~~~-------------~~~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          136 ----------SWASDFAFGPSSIDLFFLDADKE-------------NYPNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             ----------GGGTTTCCSTTCEEEEEECSCGG-------------GHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ----------cccccccCCCCCcCEEEEeCCHH-------------HHHHHHHHHHHHcCCCeEEEEEc
Confidence                      00000112  6799999974211             12589999999999999999854

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.03  E-value=1.3e-09  Score=102.95  Aligned_cols=155  Identities=15%  Similarity=0.097  Sum_probs=101.8

Q ss_pred             CCeEEEEeCc-hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVG-GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlG-gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.+|+| +|.++..+.+..+.+|++||+++.+++.|++.+....- +++++.+|+..+. .               
T Consensus        56 ~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~-~---------------  118 (230)
T 3evz_A           56 GEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS-NVRLVKSNGGIIK-G---------------  118 (230)
T ss_dssp             SCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC-CCEEEECSSCSST-T---------------
T ss_pred             CCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEeCCchhhh-h---------------
Confidence            5799999999 99999988877678999999999999999987643222 7899999974321 0               


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCC-CCCCCCCC-------CC-CChHHHHHHHHHccCcCcEEEEEeCCCCch
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDA-RNGTSAPP-------VE-FVRKDVLLAARLILSDFGIFVMNVIPPNRS  412 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~-~~g~s~Pp-------~~-f~~~efl~~~~~~L~~~Gilv~N~~~~~~~  412 (478)
                                   ..+.+||+|++|..-... ......|-       .. -.-..+++.+.+.|+|||.+++.+... ..
T Consensus       119 -------------~~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~  184 (230)
T 3evz_A          119 -------------VVEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK-EK  184 (230)
T ss_dssp             -------------TCCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC-HH
T ss_pred             -------------cccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc-Hh
Confidence                         134789999996311000 00000000       00 012789999999999999999876554 23


Q ss_pred             HHHHHHHHHHHhcCccEEEee--cccceEEEEEEcCCC
Q 038592          413 FYDMLIQEFRDVFQELYEIDV--GNEENFVLIATGLSI  448 (478)
Q Consensus       413 ~~~~v~~~l~~vF~~v~~~~v--~~~~N~Vl~a~~~~~  448 (478)
                      ....+.+.+++..-.+..+..  +.....++..++.+.
T Consensus       185 ~~~~~~~~l~~~g~~~~~~~~~~g~~~~~~l~f~~~~~  222 (230)
T 3evz_A          185 LLNVIKERGIKLGYSVKDIKFKVGTRWRHSLIFFKGIS  222 (230)
T ss_dssp             HHHHHHHHHHHTTCEEEEEEECCCC-CEEEEEEECCC-
T ss_pred             HHHHHHHHHHHcCCceEEEEecCCCeEEEEEEEecccc
Confidence            355667777766334444433  445567777676553

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.03  E-value=1.1e-09  Score=104.29  Aligned_cols=130  Identities=18%  Similarity=0.192  Sum_probs=94.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||+|+|.++..+.+.. +.+|++||+++.+++.|++......-++++++.+|+.+++...              
T Consensus        35 ~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~--------------  100 (218)
T 3dxy_A           35 APVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKM--------------  100 (218)
T ss_dssp             CCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHH--------------
T ss_pred             CCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHH--------------
Confidence            5799999999999998888765 6899999999999999998753222346999999999987652              


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHH
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEF  421 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l  421 (478)
                                   ..+..||.|++...+..+..  ......+..++|++.+++.|+|||+|++-..  .....+.+...+
T Consensus       101 -------------~~~~~~d~v~~~~~~p~~~~--~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td--~~~~~~~~~~~~  163 (218)
T 3dxy_A          101 -------------IPDNSLRMVQLFFPDPWHKA--RHNKRRIVQVPFAELVKSKLQLGGVFHMATD--WEPYAEHMLEVM  163 (218)
T ss_dssp             -------------SCTTCEEEEEEESCCCCCSG--GGGGGSSCSHHHHHHHHHHEEEEEEEEEEES--CHHHHHHHHHHH
T ss_pred             -------------cCCCChheEEEeCCCCccch--hhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC--CHHHHHHHHHHH
Confidence                         14568999998532221110  0011234567899999999999999987553  334445555555


Q ss_pred             HH
Q 038592          422 RD  423 (478)
Q Consensus       422 ~~  423 (478)
                      .+
T Consensus       164 ~~  165 (218)
T 3dxy_A          164 SS  165 (218)
T ss_dssp             HT
T ss_pred             Hh
Confidence            54

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.02  E-value=1.2e-09  Score=106.48  Aligned_cols=155  Identities=19%  Similarity=0.180  Sum_probs=103.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCC---CC-CCCeEEEEchHHHHHHHHHhhhcCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGL---ED-GEFLQVSVGDAIEFLEKLARQIVGKNPD  337 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~---~~-d~rl~v~v~Dg~~~l~~~~~~~~~~~~~  337 (478)
                      ..+||.+|+|.|.++..+.+.. ..+|++||+++.+++.|++.+..   .. .++++++.+|..++..+....       
T Consensus        37 ~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~-------  109 (260)
T 2ozv_A           37 ACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEA-------  109 (260)
T ss_dssp             CEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHT-------
T ss_pred             CCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhh-------
Confidence            4699999999999999998886 57999999999999999998764   32 347999999998875432110       


Q ss_pred             CCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCC---------CCChHHHHHHHHHccCcCcEEEEEeCC
Q 038592          338 SFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPV---------EFVRKDVLLAARLILSDFGIFVMNVIP  408 (478)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~---------~f~~~efl~~~~~~L~~~Gilv~N~~~  408 (478)
                                      .....+||+|+++.--.... +..+|..         ...-..+++.+.++|+|||.|++-...
T Consensus       110 ----------------~~~~~~fD~Vv~nPPy~~~~-~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  172 (260)
T 2ozv_A          110 ----------------GLPDEHFHHVIMNPPYNDAG-DRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRP  172 (260)
T ss_dssp             ----------------TCCTTCEEEEEECCCC----------------------CCHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred             ----------------ccCCCCcCEEEECCCCcCCC-CCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcH
Confidence                            01356799999962100000 0000000         012468999999999999999975432


Q ss_pred             CCchHHHHHHHHHHHhcCccEEEee----cccceEEEEEE
Q 038592          409 PNRSFYDMLIQEFRDVFQELYEIDV----GNEENFVLIAT  444 (478)
Q Consensus       409 ~~~~~~~~v~~~l~~vF~~v~~~~v----~~~~N~Vl~a~  444 (478)
                      .   ....++..+++.|..+....+    +...+.+|+..
T Consensus       173 ~---~~~~~~~~l~~~~~~~~i~~v~~~~~~~~~~~lv~~  209 (260)
T 2ozv_A          173 Q---SVAEIIAACGSRFGGLEITLIHPRPGEDAVRMLVTA  209 (260)
T ss_dssp             G---GHHHHHHHHTTTEEEEEEEEEESSTTSCCCEEEEEE
T ss_pred             H---HHHHHHHHHHhcCCceEEEEEcCCCCCCceEEEEEE
Confidence            2   244567777766664433332    34567777764

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.02  E-value=1e-09  Score=99.41  Aligned_cols=106  Identities=15%  Similarity=0.108  Sum_probs=84.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCC-CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLED-GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~-d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.+|+|.|.++..+.+....+|++||+++.+++.|++.+.... .++++++.+|+.+++..               
T Consensus        32 ~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~---------------   96 (177)
T 2esr_A           32 GGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDC---------------   96 (177)
T ss_dssp             SCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHH---------------
T ss_pred             CCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHh---------------
Confidence            56999999999999988887744799999999999999998875332 35799999999998754               


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCC-CChHHHHHHHH--HccCcCcEEEEEeCCC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVE-FVRKDVLLAAR--LILSDFGIFVMNVIPP  409 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~-f~~~efl~~~~--~~L~~~Gilv~N~~~~  409 (478)
                                    ...+||+|++|.            |-. ....++++.+.  +.|+|||++++.....
T Consensus        97 --------------~~~~fD~i~~~~------------~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~  141 (177)
T 2esr_A           97 --------------LTGRFDLVFLDP------------PYAKETIVATIEALAAKNLLSEQVMVVCETDKT  141 (177)
T ss_dssp             --------------BCSCEEEEEECC------------SSHHHHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             --------------hcCCCCEEEECC------------CCCcchHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence                          235699999962            210 12367788887  8999999999987665

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.99  E-value=7.8e-10  Score=105.43  Aligned_cols=107  Identities=17%  Similarity=0.035  Sum_probs=81.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.||+|+|.++..+.+....+|++||+++.+++.|++.+... ..+++++.+|+.+++..                
T Consensus        61 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~----------------  123 (236)
T 1zx0_A           61 GGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQ-THKVIPLKGLWEDVAPT----------------  123 (236)
T ss_dssp             CEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGC-SSEEEEEESCHHHHGGG----------------
T ss_pred             CCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhc-CCCeEEEecCHHHhhcc----------------
Confidence            4699999999999999997654459999999999999999987532 26799999999987532                


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC-ChHHHHHHHHHccCcCcEEEE
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF-VRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f-~~~efl~~~~~~L~~~Gilv~  404 (478)
                                  ..+.+||+|++|.+.. ..     +..+. .-..+++.+++.|+|||.|++
T Consensus       124 ------------~~~~~fD~V~~d~~~~-~~-----~~~~~~~~~~~l~~~~r~LkpgG~l~~  168 (236)
T 1zx0_A          124 ------------LPDGHFDGILYDTYPL-SE-----ETWHTHQFNFIKNHAFRLLKPGGVLTY  168 (236)
T ss_dssp             ------------SCTTCEEEEEECCCCC-BG-----GGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred             ------------cCCCceEEEEECCccc-ch-----hhhhhhhHHHHHHHHHHhcCCCeEEEE
Confidence                        1456899999975442 11     11111 123679999999999999985

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=98.98  E-value=1.3e-09  Score=98.91  Aligned_cols=110  Identities=19%  Similarity=0.163  Sum_probs=84.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCC-CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLED-GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~-d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.+|+|.|.++..+.+....+|++||+++.+++.|++.+.... .++++++.+|+.+++.....            
T Consensus        45 ~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~------------  112 (187)
T 2fhp_A           45 GGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYE------------  112 (187)
T ss_dssp             SCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHH------------
T ss_pred             CCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHh------------
Confidence            56999999999999988777545799999999999999998764321 35799999999998754321            


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHH--HHccCcCcEEEEEeCCC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAA--RLILSDFGIFVMNVIPP  409 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~--~~~L~~~Gilv~N~~~~  409 (478)
                                    ...+||+|++|..  .         ..-....+++.+  .+.|+|||++++.....
T Consensus       113 --------------~~~~fD~i~~~~~--~---------~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~  157 (187)
T 2fhp_A          113 --------------EKLQFDLVLLDPP--Y---------AKQEIVSQLEKMLERQLLTNEAVIVCETDKT  157 (187)
T ss_dssp             --------------TTCCEEEEEECCC--G---------GGCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             --------------cCCCCCEEEECCC--C---------CchhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence                          2567999999631  0         011346777877  78899999999877654

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=98.96  E-value=4.8e-09  Score=94.46  Aligned_cols=122  Identities=16%  Similarity=0.059  Sum_probs=89.1

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCC-CCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLED-GEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~-d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.+|+|.|.++..+.+.. +.+|+++|+++.+++.|++.+.... ..++ ++.+|+.+.+..              
T Consensus        26 ~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~--------------   90 (178)
T 3hm2_A           26 HETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDD--------------   90 (178)
T ss_dssp             TEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGG--------------
T ss_pred             CCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhc--------------
Confidence            4699999999999999988875 6899999999999999998764322 3378 888998765422              


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHH
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQE  420 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~  420 (478)
                                     ...+||+|+++..       +       ....+++.+++.|+|||.+++.......  ...+...
T Consensus        91 ---------------~~~~~D~i~~~~~-------~-------~~~~~l~~~~~~L~~gG~l~~~~~~~~~--~~~~~~~  139 (178)
T 3hm2_A           91 ---------------VPDNPDVIFIGGG-------L-------TAPGVFAAAWKRLPVGGRLVANAVTVES--EQMLWAL  139 (178)
T ss_dssp             ---------------CCSCCSEEEECC--------T-------TCTTHHHHHHHTCCTTCEEEEEECSHHH--HHHHHHH
T ss_pred             ---------------cCCCCCEEEECCc-------c-------cHHHHHHHHHHhcCCCCEEEEEeecccc--HHHHHHH
Confidence                           2367999998421       0       1167999999999999999988765522  2344555


Q ss_pred             HHHhcCccEE
Q 038592          421 FRDVFQELYE  430 (478)
Q Consensus       421 l~~vF~~v~~  430 (478)
                      +++....+..
T Consensus       140 ~~~~~~~~~~  149 (178)
T 3hm2_A          140 RKQFGGTISS  149 (178)
T ss_dssp             HHHHCCEEEE
T ss_pred             HHHcCCeeEE
Confidence            5555444433

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=98.95  E-value=1.7e-09  Score=102.75  Aligned_cols=103  Identities=20%  Similarity=0.255  Sum_probs=84.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      +.+||.||+|.|.++..+.+.. +.+|++||+++.+++.|++.+... ..++++++.+|+.+++....            
T Consensus        55 ~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~------------  122 (233)
T 2gpy_A           55 PARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLE------------  122 (233)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHT------------
T ss_pred             CCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcc------------
Confidence            5699999999999999998876 689999999999999999987421 23579999999998765420            


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                     ....||+|++|....             ....+++.+.+.|+|||++++.
T Consensus       123 ---------------~~~~fD~I~~~~~~~-------------~~~~~l~~~~~~L~pgG~lv~~  159 (233)
T 2gpy_A          123 ---------------LYPLFDVLFIDAAKG-------------QYRRFFDMYSPMVRPGGLILSD  159 (233)
T ss_dssp             ---------------TSCCEEEEEEEGGGS-------------CHHHHHHHHGGGEEEEEEEEEE
T ss_pred             ---------------cCCCccEEEECCCHH-------------HHHHHHHHHHHHcCCCeEEEEE
Confidence                           145799999975321             3478999999999999999986

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=98.95  E-value=1.2e-08  Score=92.21  Aligned_cols=117  Identities=19%  Similarity=0.177  Sum_probs=90.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.+|+|.|.++..+.+.. .+|+++|+++.+++.|++.+... ..++++++.+|..+.+.                
T Consensus        34 ~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----------------   96 (192)
T 1l3i_A           34 NDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALC----------------   96 (192)
T ss_dssp             TCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHT----------------
T ss_pred             CCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcc----------------
Confidence            5699999999999999888776 89999999999999999876422 23689999999988542                


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHH
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEF  421 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l  421 (478)
                                    ...+||+|+++...           .  .-..+++.+++.|+|||.+++.....  .....+.+.+
T Consensus        97 --------------~~~~~D~v~~~~~~-----------~--~~~~~l~~~~~~l~~gG~l~~~~~~~--~~~~~~~~~l  147 (192)
T 1l3i_A           97 --------------KIPDIDIAVVGGSG-----------G--ELQEILRIIKDKLKPGGRIIVTAILL--ETKFEAMECL  147 (192)
T ss_dssp             --------------TSCCEEEEEESCCT-----------T--CHHHHHHHHHHTEEEEEEEEEEECBH--HHHHHHHHHH
T ss_pred             --------------cCCCCCEEEECCch-----------H--HHHHHHHHHHHhcCCCcEEEEEecCc--chHHHHHHHH
Confidence                          12479999985211           1  13789999999999999999877643  3345566677


Q ss_pred             HHh-c
Q 038592          422 RDV-F  425 (478)
Q Consensus       422 ~~v-F  425 (478)
                      ++. |
T Consensus       148 ~~~g~  152 (192)
T 1l3i_A          148 RDLGF  152 (192)
T ss_dssp             HHTTC
T ss_pred             HHCCC
Confidence            765 6

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=98.94  E-value=3.8e-09  Score=107.17  Aligned_cols=132  Identities=18%  Similarity=0.146  Sum_probs=90.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC--CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE--DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~--~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.+|+|+|.++..+... +.+|++||+++.+++.|++.+...  .+.+++++.+|+.+++.....           
T Consensus       154 ~~~VLDlgcGtG~~sl~la~~-ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~-----------  221 (332)
T 2igt_A          154 PLKVLNLFGYTGVASLVAAAA-GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREER-----------  221 (332)
T ss_dssp             CCEEEEETCTTCHHHHHHHHT-TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHH-----------
T ss_pred             CCcEEEcccccCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHh-----------
Confidence            569999999999999888875 459999999999999999886432  123699999999999865322           


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC-----ChHHHHHHHHHccCcCcEEEEEeCCCCchHHH
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF-----VRKDVLLAARLILSDFGIFVMNVIPPNRSFYD  415 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f-----~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~  415 (478)
                                     ...+||+|++|...-    +.+ +....     .-.++++.+.++|+|||++++...+....-..
T Consensus       222 ---------------~~~~fD~Ii~dPP~~----~~~-~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~  281 (332)
T 2igt_A          222 ---------------RGSTYDIILTDPPKF----GRG-THGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFY  281 (332)
T ss_dssp             ---------------HTCCBSEEEECCCSE----EEC-TTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHH
T ss_pred             ---------------cCCCceEEEECCccc----cCC-chHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHH
Confidence                           246799999974210    000 00000     12578999999999999976654443221123


Q ss_pred             HHHHHHHHhcC
Q 038592          416 MLIQEFRDVFQ  426 (478)
Q Consensus       416 ~v~~~l~~vF~  426 (478)
                      .+.+.+++.+.
T Consensus       282 ~~~~~l~~a~~  292 (332)
T 2igt_A          282 SMHELMRETMR  292 (332)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHH
Confidence            34445555554

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=98.94  E-value=2.7e-09  Score=103.43  Aligned_cols=151  Identities=17%  Similarity=0.150  Sum_probs=98.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.+|+|.|.++..+.+....+|++||+++.+++.|++.+... ..++++++.+|+.++...               
T Consensus        50 ~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~---------------  114 (259)
T 3lpm_A           50 KGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDL---------------  114 (259)
T ss_dssp             CCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGT---------------
T ss_pred             CCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhh---------------
Confidence            5799999999999999998876569999999999999999887532 245899999999887422               


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCC-CCCCCCCCCC---------CChHHHHHHHHHccCcCcEEEEEeCCCCc
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDA-RNGTSAPPVE---------FVRKDVLLAARLILSDFGIFVMNVIPPNR  411 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~-~~g~s~Pp~~---------f~~~efl~~~~~~L~~~Gilv~N~~~~~~  411 (478)
                                   ....+||+|++|.---.. ..+..+|...         ..-..+++.+.+.|+|||.+++-....  
T Consensus       115 -------------~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--  179 (259)
T 3lpm_A          115 -------------IPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPE--  179 (259)
T ss_dssp             -------------SCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTT--
T ss_pred             -------------hccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHH--
Confidence                         135789999996311000 0011111100         012579999999999999999843222  


Q ss_pred             hHHHHHHHHHHHh-cCccEEEee----cccceEEEEEE
Q 038592          412 SFYDMLIQEFRDV-FQELYEIDV----GNEENFVLIAT  444 (478)
Q Consensus       412 ~~~~~v~~~l~~v-F~~v~~~~v----~~~~N~Vl~a~  444 (478)
                       ....+...+++. |.......+    +...+.+++..
T Consensus       180 -~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~~  216 (259)
T 3lpm_A          180 -RLLDIIDIMRKYRLEPKRIQFVHPRSDREANTVLVEG  216 (259)
T ss_dssp             -THHHHHHHHHHTTEEEEEEEEEESSTTSCCSEEEEEE
T ss_pred             -HHHHHHHHHHHCCCceEEEEEeecCCCCCcEEEEEEE
Confidence             234456666653 332221111    34557777753

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=98.94  E-value=4.3e-09  Score=100.79  Aligned_cols=120  Identities=12%  Similarity=0.034  Sum_probs=87.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhh-CCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQ-LDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~-~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||+|+|.++..+... ++.+|++||+++.+++.|++.+....-++++++.+|+.++...               
T Consensus        71 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---------------  135 (240)
T 1xdz_A           71 VNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQR---------------  135 (240)
T ss_dssp             CCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTC---------------
T ss_pred             CCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhccc---------------
Confidence            579999999999988888875 4689999999999999999865321123599999999876310               


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHH
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEF  421 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l  421 (478)
                                  .....+||+|+++...              --..+++.+++.|+|||.+++.......+....+.+.+
T Consensus       136 ------------~~~~~~fD~V~~~~~~--------------~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l  189 (240)
T 1xdz_A          136 ------------KDVRESYDIVTARAVA--------------RLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAI  189 (240)
T ss_dssp             ------------TTTTTCEEEEEEECCS--------------CHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHH
T ss_pred             ------------ccccCCccEEEEeccC--------------CHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHH
Confidence                        0024679999996421              13789999999999999999865444333344445555


Q ss_pred             HH
Q 038592          422 RD  423 (478)
Q Consensus       422 ~~  423 (478)
                      ++
T Consensus       190 ~~  191 (240)
T 1xdz_A          190 TT  191 (240)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=98.93  E-value=2.4e-09  Score=100.21  Aligned_cols=107  Identities=16%  Similarity=0.114  Sum_probs=80.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.+|+|.|.++..+......+|++||+++.+++.|++.+....-++++++.+|+.+++..                
T Consensus        55 ~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~----------------  118 (202)
T 2fpo_A           55 DAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQ----------------  118 (202)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSS----------------
T ss_pred             CCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhh----------------
Confidence            4699999999999998766554459999999999999999876422225899999999998632                


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHH--ccCcCcEEEEEeCCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARL--ILSDFGIFVMNVIPP  409 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~--~L~~~Gilv~N~~~~  409 (478)
                                   ...+||+|++|..   .        ..-...++++.+.+  .|+|||++++.....
T Consensus       119 -------------~~~~fD~V~~~~p---~--------~~~~~~~~l~~l~~~~~L~pgG~l~i~~~~~  163 (202)
T 2fpo_A          119 -------------KGTPHNIVFVDPP---F--------RRGLLEETINLLEDNGWLADEALIYVESEVE  163 (202)
T ss_dssp             -------------CCCCEEEEEECCS---S--------STTTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred             -------------cCCCCCEEEECCC---C--------CCCcHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence                         3467999999631   0        00134678888876  499999999866543

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=98.93  E-value=3.1e-09  Score=94.94  Aligned_cols=107  Identities=17%  Similarity=0.109  Sum_probs=82.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.+|+|.|.++..+.+. +.+|++||+++.+++.|++.+....- +++++.+|+.+++.....             
T Consensus        42 ~~~vLD~GcG~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~-------------  106 (171)
T 1ws6_A           42 RGRFLDPFAGSGAVGLEAASE-GWEAVLVEKDPEAVRLLKENVRRTGL-GARVVALPVEVFLPEAKA-------------  106 (171)
T ss_dssp             CCEEEEETCSSCHHHHHHHHT-TCEEEEECCCHHHHHHHHHHHHHHTC-CCEEECSCHHHHHHHHHH-------------
T ss_pred             CCeEEEeCCCcCHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHHHHcCC-ceEEEeccHHHHHHhhhc-------------
Confidence            469999999999999888876 34599999999999999987643222 799999999998755321             


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHH--HccCcCcEEEEEeCCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAAR--LILSDFGIFVMNVIPP  409 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~--~~L~~~Gilv~N~~~~  409 (478)
                                   ...+||+|++|.--.            -...++++.+.  +.|+|||++++.....
T Consensus       107 -------------~~~~~D~i~~~~~~~------------~~~~~~~~~~~~~~~L~~gG~~~~~~~~~  150 (171)
T 1ws6_A          107 -------------QGERFTVAFMAPPYA------------MDLAALFGELLASGLVEAGGLYVLQHPKD  150 (171)
T ss_dssp             -------------TTCCEEEEEECCCTT------------SCTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred             -------------cCCceEEEEECCCCc------------hhHHHHHHHHHhhcccCCCcEEEEEeCCc
Confidence                         245799999963110            12246777777  9999999999887665

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=98.93  E-value=7.5e-09  Score=97.20  Aligned_cols=114  Identities=11%  Similarity=-0.021  Sum_probs=87.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCC-CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLED-GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~-d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||+|.|.++..+.+. +.+|++||+++.+++.|++.+.... ..+++++.+|+.+.+.                
T Consensus        56 ~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~----------------  118 (204)
T 3njr_A           56 GELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALA----------------  118 (204)
T ss_dssp             TCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGT----------------
T ss_pred             CCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcc----------------
Confidence            569999999999999998887 8899999999999999998753211 2379999999988542                


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHH
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEF  421 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l  421 (478)
                                    ....||+|+++.  +            +... +++.+.+.|+|||.+++.....  +....+...+
T Consensus       119 --------------~~~~~D~v~~~~--~------------~~~~-~l~~~~~~LkpgG~lv~~~~~~--~~~~~~~~~l  167 (204)
T 3njr_A          119 --------------DLPLPEAVFIGG--G------------GSQA-LYDRLWEWLAPGTRIVANAVTL--ESETLLTQLH  167 (204)
T ss_dssp             --------------TSCCCSEEEECS--C------------CCHH-HHHHHHHHSCTTCEEEEEECSH--HHHHHHHHHH
T ss_pred             --------------cCCCCCEEEECC--c------------ccHH-HHHHHHHhcCCCcEEEEEecCc--ccHHHHHHHH
Confidence                          234699999853  1            1224 9999999999999999887754  2344455566


Q ss_pred             HHh
Q 038592          422 RDV  424 (478)
Q Consensus       422 ~~v  424 (478)
                      ++.
T Consensus       168 ~~~  170 (204)
T 3njr_A          168 ARH  170 (204)
T ss_dssp             HHH
T ss_pred             HhC
Confidence            655

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=98.93  E-value=9.1e-09  Score=100.82  Aligned_cols=103  Identities=14%  Similarity=0.203  Sum_probs=78.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC---CCEEEEEECChHHHHHHHHhcCC-CCCCCeEEEEchHHHHHHHHHhhhcCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL---DFEVVGVEMDEVVLRVARQYFGL-EDGEFLQVSVGDAIEFLEKLARQIVGKNPDS  338 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~---~~~V~~VEiDp~Vl~vA~~~Fg~-~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~  338 (478)
                      ..+||.||||+|.++..|.+..   +.+|++||++|.|++.|++.+.- ....+++++++|..++               
T Consensus        71 ~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~---------------  135 (261)
T 4gek_A           71 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI---------------  135 (261)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTC---------------
T ss_pred             CCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccc---------------
Confidence            4699999999999998888764   47999999999999999988642 2356899999998654               


Q ss_pred             CCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592          339 FGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                       +.+.||+|++-.  .  .  ...|+.  ....+|+.+++.|+|||+|++-
T Consensus       136 -----------------~~~~~d~v~~~~--~--l--~~~~~~--~~~~~l~~i~~~LkpGG~lii~  177 (261)
T 4gek_A          136 -----------------AIENASMVVLNF--T--L--QFLEPS--ERQALLDKIYQGLNPGGALVLS  177 (261)
T ss_dssp             -----------------CCCSEEEEEEES--C--G--GGSCHH--HHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -----------------cccccccceeee--e--e--eecCch--hHhHHHHHHHHHcCCCcEEEEE
Confidence                             345699998831  0  0  001111  1246899999999999999873

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=98.92  E-value=2e-09  Score=100.04  Aligned_cols=117  Identities=14%  Similarity=0.105  Sum_probs=89.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||+|.|.++..+.+.. ..+|++||+++.+++.|++.+....-++++++.+|+.+.+.                
T Consensus        41 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----------------  104 (204)
T 3e05_A           41 DLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLD----------------  104 (204)
T ss_dssp             TCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCT----------------
T ss_pred             CCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhh----------------
Confidence            5699999999999999998875 58999999999999999987632222679999999876532                


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHH
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEF  421 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l  421 (478)
                                    ....||+|+++....             .-..+++.+.+.|+|||.+++.....  .....+.+.+
T Consensus       105 --------------~~~~~D~i~~~~~~~-------------~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~l  155 (204)
T 3e05_A          105 --------------DLPDPDRVFIGGSGG-------------MLEEIIDAVDRRLKSEGVIVLNAVTL--DTLTKAVEFL  155 (204)
T ss_dssp             --------------TSCCCSEEEESCCTT-------------CHHHHHHHHHHHCCTTCEEEEEECBH--HHHHHHHHHH
T ss_pred             --------------cCCCCCEEEECCCCc-------------CHHHHHHHHHHhcCCCeEEEEEeccc--ccHHHHHHHH
Confidence                          235699999963211             34789999999999999999876554  2234455556


Q ss_pred             HHh
Q 038592          422 RDV  424 (478)
Q Consensus       422 ~~v  424 (478)
                      ++.
T Consensus       156 ~~~  158 (204)
T 3e05_A          156 EDH  158 (204)
T ss_dssp             HHT
T ss_pred             HHC
Confidence            554

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=98.92  E-value=6.1e-09  Score=98.38  Aligned_cols=130  Identities=15%  Similarity=0.214  Sum_probs=91.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||+|.|.++..|.+.. +.+|++||+++.+++.|++......-++++++.+|+.++...               
T Consensus        39 ~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~---------------  103 (213)
T 2fca_A           39 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDV---------------  103 (213)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHH---------------
T ss_pred             CceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhh---------------
Confidence            5689999999999999888875 689999999999999999875322225799999999884321               


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHH
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEF  421 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l  421 (478)
                                   .....||.|++...+.......  -...+....+++.+++.|+|||.+++-..  .......+...+
T Consensus       104 -------------~~~~~~d~v~~~~~~p~~~~~~--~~~rl~~~~~l~~~~~~LkpgG~l~~~td--~~~~~~~~~~~~  166 (213)
T 2fca_A          104 -------------FEPGEVKRVYLNFSDPWPKKRH--EKRRLTYSHFLKKYEEVMGKGGSIHFKTD--NRGLFEYSLKSF  166 (213)
T ss_dssp             -------------CCTTSCCEEEEESCCCCCSGGG--GGGSTTSHHHHHHHHHHHTTSCEEEEEES--CHHHHHHHHHHH
T ss_pred             -------------cCcCCcCEEEEECCCCCcCccc--cccccCcHHHHHHHHHHcCCCCEEEEEeC--CHHHHHHHHHHH
Confidence                         1345799999854222110000  01124468999999999999999997653  334445555556


Q ss_pred             HHh
Q 038592          422 RDV  424 (478)
Q Consensus       422 ~~v  424 (478)
                      .+.
T Consensus       167 ~~~  169 (213)
T 2fca_A          167 SEY  169 (213)
T ss_dssp             HHH
T ss_pred             HHC
Confidence            554

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=98.90  E-value=5.7e-09  Score=97.91  Aligned_cols=130  Identities=19%  Similarity=0.246  Sum_probs=90.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||+|.|.++..+.+.. +.++++||+++.+++.|++.+....-++++++.+|+.++...               
T Consensus        42 ~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~---------------  106 (214)
T 1yzh_A           42 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDY---------------  106 (214)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGT---------------
T ss_pred             CCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhh---------------
Confidence            5689999999999998888875 689999999999999999876321125799999999874211               


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHH
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEF  421 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l  421 (478)
                                   .....||+|+++........  .--+..+....+++.+++.|+|||.+++...  .......+.+.+
T Consensus       107 -------------~~~~~~D~i~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~--~~~~~~~~~~~~  169 (214)
T 1yzh_A          107 -------------FEDGEIDRLYLNFSDPWPKK--RHEKRRLTYKTFLDTFKRILPENGEIHFKTD--NRGLFEYSLVSF  169 (214)
T ss_dssp             -------------SCTTCCSEEEEESCCCCCSG--GGGGGSTTSHHHHHHHHHHSCTTCEEEEEES--CHHHHHHHHHHH
T ss_pred             -------------cCCCCCCEEEEECCCCcccc--chhhhccCCHHHHHHHHHHcCCCcEEEEEeC--CHHHHHHHHHHH
Confidence                         13457999999742211000  0000123457899999999999999998653  234444555555


Q ss_pred             HHh
Q 038592          422 RDV  424 (478)
Q Consensus       422 ~~v  424 (478)
                      .+.
T Consensus       170 ~~~  172 (214)
T 1yzh_A          170 SQY  172 (214)
T ss_dssp             HHH
T ss_pred             HHC
Confidence            543

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=98.90  E-value=2.4e-09  Score=100.17  Aligned_cols=108  Identities=16%  Similarity=0.126  Sum_probs=80.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCC--CCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDG--EFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d--~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.+|+|.|.++..+......+|++||+|+.+++.|++.+....-  ++++++.+|+.+++..              
T Consensus        54 ~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~--------------  119 (201)
T 2ift_A           54 QSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQ--------------  119 (201)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTS--------------
T ss_pred             CCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHh--------------
Confidence            469999999999999876655446999999999999999987643221  5899999999987521              


Q ss_pred             cccccCCCccCCCCCCCCc-eeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHH--HHccCcCcEEEEEeCCC
Q 038592          341 ACSLKDGNFLDNSDRVDNK-FDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAA--RLILSDFGIFVMNVIPP  409 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~-yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~--~~~L~~~Gilv~N~~~~  409 (478)
                                    ....+ ||+|++|..  .         ..-...++++.+  .+.|+|||++++...+.
T Consensus       120 --------------~~~~~~fD~I~~~~~--~---------~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~  166 (201)
T 2ift_A          120 --------------PQNQPHFDVVFLDPP--F---------HFNLAEQAISLLCENNWLKPNALIYVETEKD  166 (201)
T ss_dssp             --------------CCSSCCEEEEEECCC--S---------SSCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred             --------------hccCCCCCEEEECCC--C---------CCccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence                          02467 999999631  0         001236788888  55799999999876554

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=98.89  E-value=4.5e-09  Score=97.58  Aligned_cols=135  Identities=17%  Similarity=0.159  Sum_probs=94.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.+|+|.|.++..+.+....+|++||+++.+++.|++.+....-++++++.+|..++                   
T Consensus        61 ~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-------------------  121 (205)
T 3grz_A           61 PLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLAD-------------------  121 (205)
T ss_dssp             CCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTT-------------------
T ss_pred             CCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEecccccc-------------------
Confidence            5799999999999999988765569999999999999999886532223399999998654                   


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHHH
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEFR  422 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l~  422 (478)
                                   ...+||+|+.+.            +.+ .-..+++.+++.|+|||.+++......  ....+.+.++
T Consensus       122 -------------~~~~fD~i~~~~------------~~~-~~~~~l~~~~~~L~~gG~l~~~~~~~~--~~~~~~~~~~  173 (205)
T 3grz_A          122 -------------VDGKFDLIVANI------------LAE-ILLDLIPQLDSHLNEDGQVIFSGIDYL--QLPKIEQALA  173 (205)
T ss_dssp             -------------CCSCEEEEEEES------------CHH-HHHHHGGGSGGGEEEEEEEEEEEEEGG--GHHHHHHHHH
T ss_pred             -------------CCCCceEEEECC------------cHH-HHHHHHHHHHHhcCCCCEEEEEecCcc--cHHHHHHHHH
Confidence                         346799999963            111 126789999999999999998644332  2334455555


Q ss_pred             Hh-cCccEEEeecccceEEEEEEcCC
Q 038592          423 DV-FQELYEIDVGNEENFVLIATGLS  447 (478)
Q Consensus       423 ~v-F~~v~~~~v~~~~N~Vl~a~~~~  447 (478)
                      +. |..+..   ....++..+.++.+
T Consensus       174 ~~Gf~~~~~---~~~~~w~~~~~~~~  196 (205)
T 3grz_A          174 ENSFQIDLK---MRAGRWIGLAISRK  196 (205)
T ss_dssp             HTTEEEEEE---EEETTEEEEEEEEC
T ss_pred             HcCCceEEe---eccCCEEEEEEecc
Confidence            44 443322   22334555555444

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=98.88  E-value=5.8e-09  Score=95.12  Aligned_cols=115  Identities=12%  Similarity=0.048  Sum_probs=80.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.+|+|.|.++..+.+. +.+|++||+++.+++.|++.+....-++++++.+|...+. .                
T Consensus        23 ~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~-~----------------   84 (185)
T 3mti_A           23 ESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLD-H----------------   84 (185)
T ss_dssp             TCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGG-G----------------
T ss_pred             CCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHH-h----------------
Confidence            469999999999999999887 8899999999999999998763211267999997765431 1                


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCC-CCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDS-GDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s-~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                  ..+.+||+|++++.. ......+..  ..-....+++.+.+.|+|||.+++-+.+.
T Consensus        85 ------------~~~~~fD~v~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  138 (185)
T 3mti_A           85 ------------YVREPIRAAIFNLGYLPSADKSVIT--KPHTTLEAIEKILDRLEVGGRLAIMIYYG  138 (185)
T ss_dssp             ------------TCCSCEEEEEEEEC-------------CHHHHHHHHHHHHHHEEEEEEEEEEEC--
T ss_pred             ------------hccCCcCEEEEeCCCCCCcchhccc--ChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Confidence                        135679999987411 000000000  00123578899999999999999877654

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=98.87  E-value=1.7e-08  Score=104.29  Aligned_cols=136  Identities=13%  Similarity=0.098  Sum_probs=94.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCC-CC-CeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLED-GE-FLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~-d~-rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.+|+|+|+++..+......+|++||+++.+++.|++.+.... ++ +++++.+|+.+++.....           
T Consensus       213 ~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~-----------  281 (385)
T 2b78_A          213 GKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARR-----------  281 (385)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHH-----------
T ss_pred             CCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHH-----------
Confidence            46999999999999998887533599999999999999998874332 23 799999999999876432           


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC-ChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHH
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF-VRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQ  419 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f-~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~  419 (478)
                                     .+.+||+|++|........+.  -+..+ .-.+++..+.+.|+|||++++...+.... .+...+
T Consensus       282 ---------------~~~~fD~Ii~DPP~~~~~~~~--~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~-~~~~~~  343 (385)
T 2b78_A          282 ---------------HHLTYDIIIIDPPSFARNKKE--VFSVSKDYHKLIRQGLEILSENGLIIASTNAANMT-VSQFKK  343 (385)
T ss_dssp             ---------------TTCCEEEEEECCCCC-----C--CCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC-HHHHHH
T ss_pred             ---------------hCCCccEEEECCCCCCCChhh--HHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCC-HHHHHH
Confidence                           345799999985321000000  01100 11357788899999999999877665432 344455


Q ss_pred             HHHHhcCc
Q 038592          420 EFRDVFQE  427 (478)
Q Consensus       420 ~l~~vF~~  427 (478)
                      .+++.+..
T Consensus       344 ~i~~~~~~  351 (385)
T 2b78_A          344 QIEKGFGK  351 (385)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHH
Confidence            56665543

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=98.87  E-value=2.5e-08  Score=94.79  Aligned_cols=143  Identities=17%  Similarity=0.177  Sum_probs=96.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.+|+|.|.++..|.+.. ..+|++||+++.+++.|++.....  ++++++.+|+.+.....              
T Consensus        75 ~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~--------------  138 (230)
T 1fbn_A           75 DSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQEYA--------------  138 (230)
T ss_dssp             TCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGGGGT--------------
T ss_pred             CCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC--CCeEEEECCCCCccccc--------------
Confidence            4689999999999999999885 479999999999999999886532  78999999987521100              


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCC----CCc---hHH
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIP----PNR---SFY  414 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~----~~~---~~~  414 (478)
                                   .....||+|+.|+...          .  ....+++.+.+.|+|||.+++-+..    ...   .+.
T Consensus       139 -------------~~~~~~D~v~~~~~~~----------~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~  193 (230)
T 1fbn_A          139 -------------NIVEKVDVIYEDVAQP----------N--QAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIF  193 (230)
T ss_dssp             -------------TTSCCEEEEEECCCST----------T--HHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHH
T ss_pred             -------------ccCccEEEEEEecCCh----------h--HHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhh
Confidence                         0125799999764221          1  2467899999999999999885321    111   112


Q ss_pred             HHHHHHHHHh-cCccEEEeecc--cceEEEEEEcC
Q 038592          415 DMLIQEFRDV-FQELYEIDVGN--EENFVLIATGL  446 (478)
Q Consensus       415 ~~v~~~l~~v-F~~v~~~~v~~--~~N~Vl~a~~~  446 (478)
                      ...+..|.+. |..+...++..  ..+.+++|.+.
T Consensus       194 ~~~l~~l~~~Gf~~~~~~~~~~~~~~~~~v~~~k~  228 (230)
T 1fbn_A          194 KEQKEILEAGGFKIVDEVDIEPFEKDHVMFVGIWE  228 (230)
T ss_dssp             HHHHHHHHHHTEEEEEEEECTTTSTTEEEEEEEEC
T ss_pred             HHHHHHHHHCCCEEEEEEccCCCccceEEEEEEeC
Confidence            1223355554 65444444432  23566666653

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=98.86  E-value=1.1e-08  Score=100.14  Aligned_cols=148  Identities=16%  Similarity=0.167  Sum_probs=99.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      +.+||.+|+|.|.++..+.... +.+|++||+++.+++.|++.+....-++++++.+|..+.+                 
T Consensus       110 ~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~-----------------  172 (276)
T 2b3t_A          110 PCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSAL-----------------  172 (276)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGG-----------------
T ss_pred             CCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhc-----------------
Confidence            5699999999999999888765 6899999999999999998763211237999999987652                 


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCC-----C--CCCCCCCC--------ChHHHHHHHHHccCcCcEEEEEe
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARN-----G--TSAPPVEF--------VRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~-----g--~s~Pp~~f--------~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                    ...+||+|+.+..-.....     .  ...|...+        .-..+++.+++.|+|||.+++..
T Consensus       173 --------------~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~  238 (276)
T 2b3t_A          173 --------------AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH  238 (276)
T ss_dssp             --------------TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             --------------ccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence                          2457999999631100000     0  01122222        23678999999999999999876


Q ss_pred             CCCCchHHHHHHHHHHHh-cCccEEEeecccceEEEEEE
Q 038592          407 IPPNRSFYDMLIQEFRDV-FQELYEIDVGNEENFVLIAT  444 (478)
Q Consensus       407 ~~~~~~~~~~v~~~l~~v-F~~v~~~~v~~~~N~Vl~a~  444 (478)
                      .....+   .+.+.+++. |..+...+--.+...++++.
T Consensus       239 ~~~~~~---~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~  274 (276)
T 2b3t_A          239 GWQQGE---AVRQAFILAGYHDVETCRDYGDNERVTLGR  274 (276)
T ss_dssp             CSSCHH---HHHHHHHHTTCTTCCEEECTTSSEEEEEEE
T ss_pred             CchHHH---HHHHHHHHCCCcEEEEEecCCCCCcEEEEE
Confidence            544433   344445544 76555444334456666664

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=98.86  E-value=1.1e-08  Score=94.55  Aligned_cols=105  Identities=19%  Similarity=0.117  Sum_probs=81.7

Q ss_pred             CeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          264 PKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       264 ~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      .+||.||+|.|.++..+.+.++.+|+++|+++.+++.|++.+... ..++++++.+|+.+.-                  
T Consensus        45 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~------------------  106 (219)
T 3dlc_A           45 GTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIP------------------  106 (219)
T ss_dssp             EEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCS------------------
T ss_pred             CEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCC------------------
Confidence            499999999999999998886789999999999999999886422 2468999999986531                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIP  408 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~  408 (478)
                                  ..+.+||+|++.-.       +...+   ....+++.+++.|+|||.+++....
T Consensus       107 ------------~~~~~~D~v~~~~~-------l~~~~---~~~~~l~~~~~~L~pgG~l~~~~~~  150 (219)
T 3dlc_A          107 ------------IEDNYADLIVSRGS-------VFFWE---DVATAFREIYRILKSGGKTYIGGGF  150 (219)
T ss_dssp             ------------SCTTCEEEEEEESC-------GGGCS---CHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             ------------CCcccccEEEECch-------Hhhcc---CHHHHHHHHHHhCCCCCEEEEEecc
Confidence                        14578999998421       10001   2378999999999999999986443

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=98.85  E-value=8.5e-09  Score=98.96  Aligned_cols=121  Identities=23%  Similarity=0.247  Sum_probs=93.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhh-C-CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQ-L-DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~-~-~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      ..+||.+|+|.|.++..+.+. . ..+|+++|+++.+++.|++.+... ..++++++.+|+.+.+               
T Consensus        94 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------------  158 (255)
T 3mb5_A           94 GDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGI---------------  158 (255)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCC---------------
T ss_pred             CCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhcc---------------
Confidence            569999999999999999887 3 689999999999999999886321 2356999999988542               


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHH
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQ  419 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~  419 (478)
                                      ....||+|++|...               ...+++.+++.|+|||.+++...+.  +....+.+
T Consensus       159 ----------------~~~~~D~v~~~~~~---------------~~~~l~~~~~~L~~gG~l~~~~~~~--~~~~~~~~  205 (255)
T 3mb5_A          159 ----------------EEENVDHVILDLPQ---------------PERVVEHAAKALKPGGFFVAYTPCS--NQVMRLHE  205 (255)
T ss_dssp             ----------------CCCSEEEEEECSSC---------------GGGGHHHHHHHEEEEEEEEEEESSH--HHHHHHHH
T ss_pred             ----------------CCCCcCEEEECCCC---------------HHHHHHHHHHHcCCCCEEEEEECCH--HHHHHHHH
Confidence                            34579999996321               1468999999999999999876544  33455667


Q ss_pred             HHHHh---cCccEEE
Q 038592          420 EFRDV---FQELYEI  431 (478)
Q Consensus       420 ~l~~v---F~~v~~~  431 (478)
                      .+++.   |..+..+
T Consensus       206 ~l~~~g~~f~~~~~~  220 (255)
T 3mb5_A          206 KLREFKDYFMKPRTI  220 (255)
T ss_dssp             HHHHTGGGBSCCEEE
T ss_pred             HHHHcCCCccccEEE
Confidence            77766   7765444

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=98.85  E-value=2.5e-08  Score=97.86  Aligned_cols=142  Identities=13%  Similarity=0.075  Sum_probs=97.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-C-CEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-D-FEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~-~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.+|+|.|..+..+.+.. + .+|+++|+++..++.+++.+....-++++++.+|+.++......           
T Consensus        84 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~-----------  152 (274)
T 3ajd_A           84 DDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLK-----------  152 (274)
T ss_dssp             TCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-----------
T ss_pred             cCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhh-----------
Confidence            4699999999999999888875 4 79999999999999999875322224799999999988643211           


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCC--C---C-----CCCChHHHHHHHHHccCcCcEEEEEeCCCC
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSA--P---P-----VEFVRKDVLLAARLILSDFGIFVMNVIPPN  410 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~--P---p-----~~f~~~efl~~~~~~L~~~Gilv~N~~~~~  410 (478)
                                     ...+||+|++|+..+..  |+.-  |   +     ..-...++++.+.+.|+|||.+++...+..
T Consensus       153 ---------------~~~~fD~Vl~d~Pcs~~--g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~  215 (274)
T 3ajd_A          153 ---------------NEIFFDKILLDAPCSGN--IIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSME  215 (274)
T ss_dssp             ---------------TTCCEEEEEEEECCC--------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred             ---------------ccccCCEEEEcCCCCCC--cccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCC
Confidence                           24579999999643210  1100  0   0     001347899999999999999999776654


Q ss_pred             chHHHHHHHHHHHhcCccEEEe
Q 038592          411 RSFYDMLIQEFRDVFQELYEID  432 (478)
Q Consensus       411 ~~~~~~v~~~l~~vF~~v~~~~  432 (478)
                      ++.-..+++.+.+-++.....+
T Consensus       216 ~~ene~~v~~~l~~~~~~~~~~  237 (274)
T 3ajd_A          216 VEENEEVIKYILQKRNDVELII  237 (274)
T ss_dssp             TTSSHHHHHHHHHHCSSEEEEC
T ss_pred             hHHhHHHHHHHHHhCCCcEEec
Confidence            3333445555555555543333

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=98.85  E-value=5.4e-09  Score=101.90  Aligned_cols=104  Identities=14%  Similarity=0.098  Sum_probs=78.6

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC-----------------CCCCCeEEEEchHHHHHH
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL-----------------EDGEFLQVSVGDAIEFLE  325 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~-----------------~~d~rl~v~v~Dg~~~l~  325 (478)
                      ..+||++|||.|..+.+|.+. +.+|++||+++.+++.|++..+.                 ...++++++++|+.++-.
T Consensus        69 ~~~vLD~GCG~G~~~~~La~~-G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~  147 (252)
T 2gb4_A           69 GLRVFFPLCGKAIEMKWFADR-GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPR  147 (252)
T ss_dssp             SCEEEETTCTTCTHHHHHHHT-TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGG
T ss_pred             CCeEEEeCCCCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCCc
Confidence            569999999999999999876 77999999999999999877653                 124689999999877521


Q ss_pred             HHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          326 KLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                      .                             ...+||+|+.- ..   ...+  |+.  ....+++.+++.|+|||.+++
T Consensus       148 ~-----------------------------~~~~FD~V~~~-~~---l~~l--~~~--~~~~~l~~~~~~LkpGG~l~l  189 (252)
T 2gb4_A          148 A-----------------------------NIGKFDRIWDR-GA---LVAI--NPG--DHDRYADIILSLLRKEFQYLV  189 (252)
T ss_dssp             G-----------------------------CCCCEEEEEES-SS---TTTS--CGG--GHHHHHHHHHHTEEEEEEEEE
T ss_pred             c-----------------------------cCCCEEEEEEh-hh---hhhC--CHH--HHHHHHHHHHHHcCCCeEEEE
Confidence            0                             12689999952 11   1111  221  246799999999999999864

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=98.84  E-value=3.7e-09  Score=98.01  Aligned_cols=103  Identities=16%  Similarity=0.029  Sum_probs=81.1

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.+|+|+|.++..+.... +.+|++||+++.+++.|++.+....-++++++.+|+.++.                 
T Consensus        66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----------------  128 (207)
T 1jsx_A           66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-----------------  128 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-----------------
T ss_pred             CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC-----------------
Confidence            4699999999999998888875 6899999999999999998764322234999999987652                 


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPN  410 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~  410 (478)
                                    ...+||+|++...        .      .-..+++.+++.|+|||.+++......
T Consensus       129 --------------~~~~~D~i~~~~~--------~------~~~~~l~~~~~~L~~gG~l~~~~~~~~  169 (207)
T 1jsx_A          129 --------------SEPPFDGVISRAF--------A------SLNDMVSWCHHLPGEQGRFYALKGQMP  169 (207)
T ss_dssp             --------------CCSCEEEEECSCS--------S------SHHHHHHHHTTSEEEEEEEEEEESSCC
T ss_pred             --------------ccCCcCEEEEecc--------C------CHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence                          2457999997321        0      126899999999999999998766543

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=98.84  E-value=5.7e-08  Score=90.50  Aligned_cols=140  Identities=14%  Similarity=0.144  Sum_probs=99.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      +.+||.||+|.|.++..+.+. ..+|++||+++.+++.|++.+.-  .++++++++|+.++.                  
T Consensus        52 ~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~------------------  110 (216)
T 3ofk_A           52 VSNGLEIGCAAGAFTEKLAPH-CKRLTVIDVMPRAIGRACQRTKR--WSHISWAATDILQFS------------------  110 (216)
T ss_dssp             EEEEEEECCTTSHHHHHHGGG-EEEEEEEESCHHHHHHHHHHTTT--CSSEEEEECCTTTCC------------------
T ss_pred             CCcEEEEcCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHhccc--CCCeEEEEcchhhCC------------------
Confidence            569999999999999988876 46999999999999999998763  348999999987652                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCCh----HHHHHHHHHccCcCcEEEEEeCCC-------Cc
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVR----KDVLLAARLILSDFGIFVMNVIPP-------NR  411 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~----~efl~~~~~~L~~~Gilv~N~~~~-------~~  411 (478)
                                   ...+||+|++.-    .   +    .++-+    ..+++.+++.|+|||.+++.....       ..
T Consensus       111 -------------~~~~fD~v~~~~----~---l----~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~  166 (216)
T 3ofk_A          111 -------------TAELFDLIVVAE----V---L----YYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARDATCRRWGHV  166 (216)
T ss_dssp             -------------CSCCEEEEEEES----C---G----GGSSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHTTCS
T ss_pred             -------------CCCCccEEEEcc----H---H----HhCCCHHHHHHHHHHHHHHcCCCCEEEEEecCCCcchhhhhh
Confidence                         356899999941    1   0    11221    478999999999999999865322       12


Q ss_pred             hHHHHHHHHHHHhcCccEEEeec---ccceEEEEEEcCC
Q 038592          412 SFYDMLIQEFRDVFQELYEIDVG---NEENFVLIATGLS  447 (478)
Q Consensus       412 ~~~~~v~~~l~~vF~~v~~~~v~---~~~N~Vl~a~~~~  447 (478)
                      .....+...+.+.|..+-.+...   .....++.....+
T Consensus       167 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~l~~~~~~  205 (216)
T 3ofk_A          167 AGAETVITILTEALTEVERVQCQGQSADEDCLLARFRNP  205 (216)
T ss_dssp             CCHHHHHHHHHHHSEEEEEEEEECSSTTCEEEEEEEECC
T ss_pred             hhHHHHHHHHHhhccceEEEeccCCccccchhHHHHhCC
Confidence            22345666777777766544432   2334555444444

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=98.84  E-value=2e-08  Score=94.81  Aligned_cols=142  Identities=19%  Similarity=0.282  Sum_probs=95.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.+|+|.|.++..+.+..  ..+|++||+++.+++.|++.....  ++++++.+|+.+...-  .           
T Consensus        74 ~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~--~~v~~~~~d~~~~~~~--~-----------  138 (227)
T 1g8a_A           74 GKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--RNIVPILGDATKPEEY--R-----------  138 (227)
T ss_dssp             TCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--TTEEEEECCTTCGGGG--T-----------
T ss_pred             CCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc--CCCEEEEccCCCcchh--h-----------
Confidence            4699999999999999998874  479999999999999998876532  6899999998763100  0           


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC----Cc---hH
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP----NR---SF  413 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~----~~---~~  413 (478)
                                    ....+||+|++|...          |.  ....++..+++.|+|||.+++-+...    ..   .+
T Consensus       139 --------------~~~~~~D~v~~~~~~----------~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  192 (227)
T 1g8a_A          139 --------------ALVPKVDVIFEDVAQ----------PT--QAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQV  192 (227)
T ss_dssp             --------------TTCCCEEEEEECCCS----------TT--HHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHH
T ss_pred             --------------cccCCceEEEECCCC----------Hh--HHHHHHHHHHHhcCCCCEEEEEEecCCCCCCCChhhh
Confidence                          023479999987531          11  23456999999999999998764221    11   12


Q ss_pred             HHHHHHHHHHhcCccEEEeecc--cceEEEEEEc
Q 038592          414 YDMLIQEFRDVFQELYEIDVGN--EENFVLIATG  445 (478)
Q Consensus       414 ~~~v~~~l~~vF~~v~~~~v~~--~~N~Vl~a~~  445 (478)
                      ....+..+.+.|..+....+..  ....++++.+
T Consensus       193 ~~~~l~~l~~~f~~~~~~~~~~~~~~~~~~~~~~  226 (227)
T 1g8a_A          193 FREVERELSEYFEVIERLNLEPYEKDHALFVVRK  226 (227)
T ss_dssp             HHHHHHHHHTTSEEEEEEECTTTSSSEEEEEEEC
T ss_pred             hHHHHHHHHhhceeeeEeccCcccCCCEEEEEEe
Confidence            2223344444476555555432  2345555543

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=98.84  E-value=7.4e-09  Score=95.36  Aligned_cols=116  Identities=14%  Similarity=0.148  Sum_probs=84.1

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCC-CCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLED-GEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~-d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      ..+||.+|+|.|.++..+.+..  ..+|++||+++.+++.|++.+.... .++++++.+|+.++...             
T Consensus        23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-------------   89 (197)
T 3eey_A           23 GDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKY-------------   89 (197)
T ss_dssp             TCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGT-------------
T ss_pred             CCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhh-------------
Confidence            4699999999999999988874  4799999999999999998864321 36899999998766321             


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCC-CCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDS-GDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s-~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                      ...+||+|++|..- ..........+  -...++++.+.+.|+|||.+++.....
T Consensus        90 ----------------~~~~fD~v~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~Lk~gG~l~~~~~~~  142 (197)
T 3eey_A           90 ----------------IDCPVKAVMFNLGYLPSGDHSISTRP--ETTIQALSKAMELLVTGGIITVVIYYG  142 (197)
T ss_dssp             ----------------CCSCEEEEEEEESBCTTSCTTCBCCH--HHHHHHHHHHHHHEEEEEEEEEEECCB
T ss_pred             ----------------ccCCceEEEEcCCcccCcccccccCc--ccHHHHHHHHHHhCcCCCEEEEEEccC
Confidence                            34689999997521 00000000000  022579999999999999999877543

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=98.83  E-value=1.1e-07  Score=88.76  Aligned_cols=99  Identities=20%  Similarity=0.217  Sum_probs=79.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      +.+||.||+|.|.++..+.+. +.+|++||+++.+++.|++.+.    .+++++.+|+.++-                  
T Consensus        46 ~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~d~~~~~------------------  102 (220)
T 3hnr_A           46 FGNVLEFGVGTGNLTNKLLLA-GRTVYGIEPSREMRMIAKEKLP----KEFSITEGDFLSFE------------------  102 (220)
T ss_dssp             CSEEEEECCTTSHHHHHHHHT-TCEEEEECSCHHHHHHHHHHSC----TTCCEESCCSSSCC------------------
T ss_pred             CCeEEEeCCCCCHHHHHHHhC-CCeEEEEeCCHHHHHHHHHhCC----CceEEEeCChhhcC------------------
Confidence            569999999999999988876 7899999999999999999876    57889999887641                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCCh---HHHHHHHHHccCcCcEEEEEeCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVR---KDVLLAARLILSDFGIFVMNVIP  408 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~---~efl~~~~~~L~~~Gilv~N~~~  408 (478)
                                  .. .+||+|++..    .   +    ..+-.   ..+|+.+++.|+|||.+++....
T Consensus       103 ------------~~-~~fD~v~~~~----~---l----~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  147 (220)
T 3hnr_A          103 ------------VP-TSIDTIVSTY----A---F----HHLTDDEKNVAIAKYSQLLNKGGKIVFADTI  147 (220)
T ss_dssp             ------------CC-SCCSEEEEES----C---G----GGSCHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred             ------------CC-CCeEEEEECc----c---h----hcCChHHHHHHHHHHHHhcCCCCEEEEEecc
Confidence                        13 7899999952    1   1    11222   34999999999999999987543

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=98.82  E-value=1.6e-08  Score=93.77  Aligned_cols=101  Identities=13%  Similarity=0.156  Sum_probs=81.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.||+|.|.++..+.+. +.+|++||+++.+++.|++ .+   .++++++.+|+.++.                  
T Consensus        47 ~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~-~~---~~~~~~~~~d~~~~~------------------  103 (218)
T 3ou2_A           47 RGDVLELASGTGYWTRHLSGL-ADRVTALDGSAEMIAEAGR-HG---LDNVEFRQQDLFDWT------------------  103 (218)
T ss_dssp             CSEEEEESCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHGG-GC---CTTEEEEECCTTSCC------------------
T ss_pred             CCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHh-cC---CCCeEEEecccccCC------------------
Confidence            469999999999999998887 7799999999999999998 23   267999999987651                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCCh---HHHHHHHHHccCcCcEEEEEeCCCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVR---KDVLLAARLILSDFGIFVMNVIPPN  410 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~---~efl~~~~~~L~~~Gilv~N~~~~~  410 (478)
                                   ...+||+|++..       .+    .++-.   ..+++.+++.|+|||.+++...++.
T Consensus       104 -------------~~~~~D~v~~~~-------~l----~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  150 (218)
T 3ou2_A          104 -------------PDRQWDAVFFAH-------WL----AHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDH  150 (218)
T ss_dssp             -------------CSSCEEEEEEES-------CG----GGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred             -------------CCCceeEEEEec-------hh----hcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence                         467899999842       11    11222   7899999999999999998776653

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=98.82  E-value=1.2e-08  Score=98.32  Aligned_cols=130  Identities=12%  Similarity=0.134  Sum_probs=89.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcC------CCCCCCeEEEEchHHHHHHHHHhhhcCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFG------LEDGEFLQVSVGDAIEFLEKLARQIVGKN  335 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg------~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~  335 (478)
                      ..+||.||+|.|.++..|.+.. +..|++||+++.+++.|++...      ....++++++.+|+.+++...        
T Consensus        47 ~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~--------  118 (235)
T 3ckk_A           47 QVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNF--------  118 (235)
T ss_dssp             CEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHH--------
T ss_pred             CCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhh--------
Confidence            5689999999999999988875 6899999999999999986532      112357999999998865432        


Q ss_pred             CCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHH
Q 038592          336 PDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYD  415 (478)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~  415 (478)
                                         .....||.|++...+.......  .-..+....+++.+++.|+|||.|++....  .....
T Consensus       119 -------------------~~~~~~D~v~~~~~dp~~k~~h--~krr~~~~~~l~~~~~~LkpGG~l~~~td~--~~~~~  175 (235)
T 3ckk_A          119 -------------------FYKGQLTKMFFLFPDPHFKRTK--HKWRIISPTLLAEYAYVLRVGGLVYTITDV--LELHD  175 (235)
T ss_dssp             -------------------CCTTCEEEEEEESCC-------------CCCHHHHHHHHHHEEEEEEEEEEESC--HHHHH
T ss_pred             -------------------CCCcCeeEEEEeCCCchhhhhh--hhhhhhhHHHHHHHHHHCCCCCEEEEEeCC--HHHHH
Confidence                               1356799999854221110000  001234578999999999999999976543  34444


Q ss_pred             HHHHHHHH
Q 038592          416 MLIQEFRD  423 (478)
Q Consensus       416 ~v~~~l~~  423 (478)
                      .+...+.+
T Consensus       176 ~~~~~l~~  183 (235)
T 3ckk_A          176 WMCTHFEE  183 (235)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            44444443

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=98.81  E-value=3.6e-08  Score=101.46  Aligned_cols=114  Identities=24%  Similarity=0.238  Sum_probs=86.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.+|+|.|.++..+... ..+|++||+++..++.|++.+....-++++++.+|+.+++.....             
T Consensus       210 ~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~-------------  275 (382)
T 1wxx_A          210 GERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEK-------------  275 (382)
T ss_dssp             EEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHH-------------
T ss_pred             CCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHh-------------
Confidence            358999999999999998887 679999999999999999987543223499999999999876432             


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC-----ChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF-----VRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f-----~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                   .+.+||+|++|...-.    .  .+...     .-.+++..+.+.|+|||++++...+.
T Consensus       276 -------------~~~~fD~Ii~dpP~~~----~--~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  328 (382)
T 1wxx_A          276 -------------EGERFDLVVLDPPAFA----K--GKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH  328 (382)
T ss_dssp             -------------TTCCEEEEEECCCCSC----C--STTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             -------------cCCCeeEEEECCCCCC----C--ChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence                         3568999999742110    0  01111     12568899999999999999876654

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=98.81  E-value=1.3e-08  Score=99.63  Aligned_cols=98  Identities=20%  Similarity=0.099  Sum_probs=77.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.||||+|.++..|.++ ..+|++||+++.+++.|+++      ++++++++|+.+.                   
T Consensus        40 ~~~vLDvGcGtG~~~~~l~~~-~~~v~gvD~s~~ml~~a~~~------~~v~~~~~~~e~~-------------------   93 (257)
T 4hg2_A           40 RGDALDCGCGSGQASLGLAEF-FERVHAVDPGEAQIRQALRH------PRVTYAVAPAEDT-------------------   93 (257)
T ss_dssp             SSEEEEESCTTTTTHHHHHTT-CSEEEEEESCHHHHHTCCCC------TTEEEEECCTTCC-------------------
T ss_pred             CCCEEEEcCCCCHHHHHHHHh-CCEEEEEeCcHHhhhhhhhc------CCceeehhhhhhh-------------------
Confidence            568999999999999988876 46999999999999988653      6799999997543                   


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIP  408 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~  408 (478)
                                 +.++..||+|++-  .  .   +    ..+-...+++.+++.|+|||+|++....
T Consensus        94 -----------~~~~~sfD~v~~~--~--~---~----h~~~~~~~~~e~~rvLkpgG~l~~~~~~  137 (257)
T 4hg2_A           94 -----------GLPPASVDVAIAA--Q--A---M----HWFDLDRFWAELRRVARPGAVFAAVTYG  137 (257)
T ss_dssp             -----------CCCSSCEEEEEEC--S--C---C----TTCCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             -----------cccCCcccEEEEe--e--e---h----hHhhHHHHHHHHHHHcCCCCEEEEEECC
Confidence                       1256789999982  1  1   1    1233478999999999999999875543

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=98.81  E-value=1.1e-08  Score=95.07  Aligned_cols=99  Identities=24%  Similarity=0.219  Sum_probs=78.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.||+|.|.++..+.+. ..+|++||+++.+++.|++.+....-++++++.+|+.+...                 
T Consensus        78 ~~~vLdiG~G~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----------------  139 (210)
T 3lbf_A           78 QSRVLEIGTGSGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQ-----------------  139 (210)
T ss_dssp             TCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG-----------------
T ss_pred             CCEEEEEcCCCCHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCc-----------------
Confidence            579999999999999988887 78999999999999999988743223479999999987531                 


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIP  408 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~  408 (478)
                                   ...+||+|+++..-           .++.     ..+++.|+|||.+++.+..
T Consensus       140 -------------~~~~~D~i~~~~~~-----------~~~~-----~~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          140 -------------ARAPFDAIIVTAAP-----------PEIP-----TALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             -------------GGCCEEEEEESSBC-----------SSCC-----THHHHTEEEEEEEEEEECS
T ss_pred             -------------cCCCccEEEEccch-----------hhhh-----HHHHHhcccCcEEEEEEcC
Confidence                         24679999996311           1112     2588999999999998876

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=98.81  E-value=1.8e-08  Score=95.17  Aligned_cols=102  Identities=24%  Similarity=0.367  Sum_probs=81.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      +.+||.||+|.|.++..+.+.. +.+|++||+++.+++.|++.+...  ++++++.+|+.++.                 
T Consensus        45 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~-----------------  105 (234)
T 3dtn_A           45 NPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGN--LKVKYIEADYSKYD-----------------  105 (234)
T ss_dssp             SCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSC--TTEEEEESCTTTCC-----------------
T ss_pred             CCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccC--CCEEEEeCchhccC-----------------
Confidence            5799999999999999998876 789999999999999999987532  38999999987651                 


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCCh---HHHHHHHHHccCcCcEEEEEeCC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVR---KDVLLAARLILSDFGIFVMNVIP  408 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~---~efl~~~~~~L~~~Gilv~N~~~  408 (478)
                                    ...+||+|++..    .       -..+-.   ..+++.+++.|+|||.+++....
T Consensus       106 --------------~~~~fD~v~~~~----~-------l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  150 (234)
T 3dtn_A          106 --------------FEEKYDMVVSAL----S-------IHHLEDEDKKELYKRSYSILKESGIFINADLV  150 (234)
T ss_dssp             --------------CCSCEEEEEEES----C-------GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             --------------CCCCceEEEEeC----c-------cccCCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence                          236899999952    1       112222   25999999999999999985533

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=98.80  E-value=3.2e-08  Score=96.15  Aligned_cols=121  Identities=12%  Similarity=-0.017  Sum_probs=87.6

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||+|+|.++..|.... +.+|++||+++.+++.|++......-.+++++.+|+.++...               
T Consensus        81 ~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~---------------  145 (249)
T 3g89_A           81 PLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLARE---------------  145 (249)
T ss_dssp             SCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTS---------------
T ss_pred             CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcc---------------
Confidence            5799999999999988888774 689999999999999999765321123599999999887311               


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHH
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEF  421 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l  421 (478)
                                  .....+||+|+.....              --..+++.+.+.|+|||.+++-......+....+...+
T Consensus       146 ------------~~~~~~fD~I~s~a~~--------------~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l  199 (249)
T 3g89_A          146 ------------AGHREAYARAVARAVA--------------PLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPAL  199 (249)
T ss_dssp             ------------TTTTTCEEEEEEESSC--------------CHHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHH
T ss_pred             ------------cccCCCceEEEECCcC--------------CHHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHH
Confidence                        0124689999996421              12679999999999999998755443333333444444


Q ss_pred             HHh
Q 038592          422 RDV  424 (478)
Q Consensus       422 ~~v  424 (478)
                      +..
T Consensus       200 ~~~  202 (249)
T 3g89_A          200 ERL  202 (249)
T ss_dssp             HHH
T ss_pred             HHc
Confidence            443

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=98.80  E-value=2.3e-09  Score=103.28  Aligned_cols=98  Identities=17%  Similarity=0.273  Sum_probs=77.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhh-----CCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHH--HHHHHhhhcCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQ-----LDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEF--LEKLARQIVGKN  335 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~-----~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~--l~~~~~~~~~~~  335 (478)
                      +.+||.||+|.|.++..|.+.     .+.+|++||+++.+++.|+.   +  .++++++++|+.++  +..         
T Consensus        82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~---~--~~~v~~~~gD~~~~~~l~~---------  147 (236)
T 2bm8_A           82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS---D--MENITLHQGDCSDLTTFEH---------  147 (236)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG---G--CTTEEEEECCSSCSGGGGG---------
T ss_pred             CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc---c--CCceEEEECcchhHHHHHh---------
Confidence            569999999999999988876     36899999999999999973   2  36899999999874  221         


Q ss_pred             CCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHH-ccCcCcEEEEEe
Q 038592          336 PDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARL-ILSDFGIFVMNV  406 (478)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~-~L~~~Gilv~N~  406 (478)
                                         ....+||+|++|...           .  .-..+|..+.+ .|+|||++++.-
T Consensus       148 -------------------~~~~~fD~I~~d~~~-----------~--~~~~~l~~~~r~~LkpGG~lv~~d  187 (236)
T 2bm8_A          148 -------------------LREMAHPLIFIDNAH-----------A--NTFNIMKWAVDHLLEEGDYFIIED  187 (236)
T ss_dssp             -------------------GSSSCSSEEEEESSC-----------S--SHHHHHHHHHHHTCCTTCEEEECS
T ss_pred             -------------------hccCCCCEEEECCch-----------H--hHHHHHHHHHHhhCCCCCEEEEEe
Confidence                               023369999998531           1  23679999997 999999999853

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.80  E-value=8.5e-08  Score=86.83  Aligned_cols=121  Identities=21%  Similarity=0.233  Sum_probs=87.6

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      +.+||.||+|.|.++..+.+. +.+++++|+++.+++.|++.+     ++++++.+|..++-                  
T Consensus        47 ~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~~~~~~~~a~~~~-----~~~~~~~~d~~~~~------------------  102 (195)
T 3cgg_A           47 GAKILDAGCGQGRIGGYLSKQ-GHDVLGTDLDPILIDYAKQDF-----PEARWVVGDLSVDQ------------------  102 (195)
T ss_dssp             TCEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTTSC------------------
T ss_pred             CCeEEEECCCCCHHHHHHHHC-CCcEEEEcCCHHHHHHHHHhC-----CCCcEEEcccccCC------------------
Confidence            579999999999999988876 679999999999999999986     35889999976531                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHHH
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEFR  422 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l~  422 (478)
                                  ....+||+|++....-.   .+  ++.  ....+++.+++.|+|||.+++............+.+.+.
T Consensus       103 ------------~~~~~~D~i~~~~~~~~---~~--~~~--~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~  163 (195)
T 3cgg_A          103 ------------ISETDFDLIVSAGNVMG---FL--AED--GREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAE  163 (195)
T ss_dssp             ------------CCCCCEEEEEECCCCGG---GS--CHH--HHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHH
T ss_pred             ------------CCCCceeEEEECCcHHh---hc--ChH--HHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHH
Confidence                        13567999998411000   00  000  126899999999999999999776553222444555555


Q ss_pred             Hh-cC
Q 038592          423 DV-FQ  426 (478)
Q Consensus       423 ~v-F~  426 (478)
                      +. |.
T Consensus       164 ~~Gf~  168 (195)
T 3cgg_A          164 RVGLE  168 (195)
T ss_dssp             HHTEE
T ss_pred             HcCCE
Confidence            54 54

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=98.80  E-value=2.7e-08  Score=95.13  Aligned_cols=117  Identities=21%  Similarity=0.162  Sum_probs=88.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      ..+||.+|+|.|.++..+.+..  ..+|+++|+++.+++.|++.+... ..++++++.+|+.+.  .             
T Consensus        97 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~--~-------------  161 (258)
T 2pwy_A           97 GMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEA--E-------------  161 (258)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGC--C-------------
T ss_pred             CCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhc--C-------------
Confidence            4699999999999999888873  579999999999999999886211 146899999998764  0             


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHH
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQ  419 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~  419 (478)
                                     .....||+|++|..+               ...+++.+.+.|+|||.+++...+.  +....+++
T Consensus       162 ---------------~~~~~~D~v~~~~~~---------------~~~~l~~~~~~L~~gG~l~~~~~~~--~~~~~~~~  209 (258)
T 2pwy_A          162 ---------------LEEAAYDGVALDLME---------------PWKVLEKAALALKPDRFLVAYLPNI--TQVLELVR  209 (258)
T ss_dssp             ---------------CCTTCEEEEEEESSC---------------GGGGHHHHHHHEEEEEEEEEEESCH--HHHHHHHH
T ss_pred             ---------------CCCCCcCEEEECCcC---------------HHHHHHHHHHhCCCCCEEEEEeCCH--HHHHHHHH
Confidence                           134579999996421               1368999999999999999877544  33445555


Q ss_pred             HHHHh-cC
Q 038592          420 EFRDV-FQ  426 (478)
Q Consensus       420 ~l~~v-F~  426 (478)
                      .|++. |.
T Consensus       210 ~l~~~gf~  217 (258)
T 2pwy_A          210 AAEAHPFR  217 (258)
T ss_dssp             HHTTTTEE
T ss_pred             HHHHCCCc
Confidence            56543 44

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=98.79  E-value=1.1e-08  Score=98.40  Aligned_cols=130  Identities=12%  Similarity=0.191  Sum_probs=89.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCC--------CCCCeEEEEchHHHHHHHHHhhhcC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLE--------DGEFLQVSVGDAIEFLEKLARQIVG  333 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~--------~d~rl~v~v~Dg~~~l~~~~~~~~~  333 (478)
                      ..+||.||+|.|.++..+.... +.+|++||+++.+++.|++.+...        .-++++++.+|+.+++.+.      
T Consensus        50 ~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~------  123 (246)
T 2vdv_E           50 KVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNF------  123 (246)
T ss_dssp             CEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGT------
T ss_pred             CCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHh------
Confidence            5689999999999999888875 579999999999999998765211        1247999999998866431      


Q ss_pred             CCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchH
Q 038592          334 KNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSF  413 (478)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~  413 (478)
                                           .....+|.|++...+......-  --..+...+++..+.+.|+|||.|++.+.  ...+
T Consensus       124 ---------------------~~~~~~d~v~~~~p~p~~k~~~--~~~r~~~~~~l~~~~~~LkpgG~l~~~td--~~~~  178 (246)
T 2vdv_E          124 ---------------------FEKGQLSKMFFCFPDPHFKQRK--HKARIITNTLLSEYAYVLKEGGVVYTITD--VKDL  178 (246)
T ss_dssp             ---------------------SCTTCEEEEEEESCCCC--------CSSCCCHHHHHHHHHHEEEEEEEEEEES--CHHH
T ss_pred             ---------------------ccccccCEEEEECCCcccccch--hHHhhccHHHHHHHHHHcCCCCEEEEEec--cHHH
Confidence                                 1356799998864222110000  00123457999999999999999998543  2344


Q ss_pred             HHHHHHHHHH
Q 038592          414 YDMLIQEFRD  423 (478)
Q Consensus       414 ~~~v~~~l~~  423 (478)
                      .+.+...+.+
T Consensus       179 ~~~~~~~~~~  188 (246)
T 2vdv_E          179 HEWMVKHLEE  188 (246)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            4444444433

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.78  E-value=7.7e-08  Score=88.76  Aligned_cols=103  Identities=19%  Similarity=0.237  Sum_probs=81.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      +.+||.||+|.|.++..|.+. +.+|++||+++.+++.|++.+     ++++++.+|+.++-                  
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~------------------   97 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL-GHQIEGLEPATRLVELARQTH-----PSVTFHHGTITDLS------------------   97 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT-TCCEEEECCCHHHHHHHHHHC-----TTSEEECCCGGGGG------------------
T ss_pred             CCeEEEecCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHhC-----CCCeEEeCcccccc------------------
Confidence            469999999999999988876 679999999999999999884     47899999987641                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                  ..+.+||+|++.-    ....+  |+.  .-..+++.+++.|+|||.+++.....
T Consensus        98 ------------~~~~~fD~v~~~~----~l~~~--~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~  144 (203)
T 3h2b_A           98 ------------DSPKRWAGLLAWY----SLIHM--GPG--ELPDALVALRMAVEDGGGLLMSFFSG  144 (203)
T ss_dssp             ------------GSCCCEEEEEEES----SSTTC--CTT--THHHHHHHHHHTEEEEEEEEEEEECC
T ss_pred             ------------cCCCCeEEEEehh----hHhcC--CHH--HHHHHHHHHHHHcCCCcEEEEEEccC
Confidence                        1457899999942    11011  111  24789999999999999999877554

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=98.78  E-value=4.5e-08  Score=103.70  Aligned_cols=134  Identities=16%  Similarity=0.163  Sum_probs=98.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-C-CEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-D-FEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~-~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.+|+|.|+.+..|.+.. + .+|+++|+++..++.|++.+....-. ++++.+|+.++...              
T Consensus       102 g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~--------------  166 (464)
T 3m6w_A          102 GERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEA--------------  166 (464)
T ss_dssp             TCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHH--------------
T ss_pred             CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhh--------------
Confidence            4699999999999999998875 3 79999999999999999775311123 89999999997543              


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCC-CCCCCC-------------ChHHHHHHHHHccCcCcEEEEEe
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTS-APPVEF-------------VRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s-~Pp~~f-------------~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                     ...+||+|++|+..+..  |+. --|...             ...++|+.+.+.|+|||.|++.+
T Consensus       167 ---------------~~~~FD~Il~D~PcSg~--G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysT  229 (464)
T 3m6w_A          167 ---------------FGTYFHRVLLDAPCSGE--GMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYST  229 (464)
T ss_dssp             ---------------HCSCEEEEEEECCCCCG--GGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             ---------------ccccCCEEEECCCcCCc--cccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence                           24579999999865321  221 112211             23789999999999999999887


Q ss_pred             CCCCchHHHHHHHHHHHhcCcc
Q 038592          407 IPPNRSFYDMLIQEFRDVFQEL  428 (478)
Q Consensus       407 ~~~~~~~~~~v~~~l~~vF~~v  428 (478)
                      .+..++--+.++..+.+-++..
T Consensus       230 Cs~~~eEne~vv~~~l~~~~~~  251 (464)
T 3m6w_A          230 CTFAPEENEGVVAHFLKAHPEF  251 (464)
T ss_dssp             SCCCGGGTHHHHHHHHHHCTTE
T ss_pred             ccCchhcCHHHHHHHHHHCCCc
Confidence            7665554555666666666543

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.77  E-value=8.2e-09  Score=101.29  Aligned_cols=146  Identities=14%  Similarity=0.098  Sum_probs=95.9

Q ss_pred             CCeEEEEeCchhHHHHHHHh--------hCC-----CEEEEEECCh--------------HHHHHHHHhcC---------
Q 038592          263 RPKALCVGVGGGALVSFLRT--------QLD-----FEVVGVEMDE--------------VVLRVARQYFG---------  306 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~--------~~~-----~~V~~VEiDp--------------~Vl~vA~~~Fg---------  306 (478)
                      +.+||.||.|+|.....+.+        .++     .+++++|.+|              ++.+.|++.+.         
T Consensus        61 ~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g~  140 (257)
T 2qy6_A           61 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC  140 (257)
T ss_dssp             EEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSEE
T ss_pred             CCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccch
Confidence            57999999999986655433        232     5899999997              44446666532         


Q ss_pred             ----CC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCC
Q 038592          307 ----LE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPV  381 (478)
Q Consensus       307 ----~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~  381 (478)
                          +. ...+++++.+|+.+.+.+...                         .....||+|++|.+++..       .+
T Consensus       141 ~r~~~~~~~~~l~l~~GDa~~~l~~~~~-------------------------~~~~~~D~iflD~fsp~~-------~p  188 (257)
T 2qy6_A          141 HRLLLDEGRVTLDLWFGDINELISQLDD-------------------------SLNQKVDAWFLDGFAPAK-------NP  188 (257)
T ss_dssp             EEEEEC--CEEEEEEESCHHHHGGGSCG-------------------------GGTTCEEEEEECSSCTTT-------CG
T ss_pred             hheeccCCceEEEEEECcHHHHHhhccc-------------------------ccCCeEEEEEECCCCccc-------Ch
Confidence                11 124688999999998765200                         012379999999877542       23


Q ss_pred             CCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHHHHh-cCccEEEeecccceEEEEEEcCC
Q 038592          382 EFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEFRDV-FQELYEIDVGNEENFVLIATGLS  447 (478)
Q Consensus       382 ~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l~~v-F~~v~~~~v~~~~N~Vl~a~~~~  447 (478)
                      ++.+.++|+.++++|+|||+|+.  .+....    +.+.|++. |. +...+-......++.+.+.+
T Consensus       189 ~lw~~~~l~~l~~~L~pGG~l~t--ysaa~~----vrr~L~~aGF~-v~~~~g~~~kr~m~~a~~~~  248 (257)
T 2qy6_A          189 DMWTQNLFNAMARLARPGGTLAT--FTSAGF----VRRGLQEAGFT-MQKRKGFGRKREMLCGVMEQ  248 (257)
T ss_dssp             GGCCHHHHHHHHHHEEEEEEEEE--SCCBHH----HHHHHHHHTEE-EEEECCSTTCCCEEEEEEC-
T ss_pred             hhcCHHHHHHHHHHcCCCcEEEE--EeCCHH----HHHHHHHCCCE-EEeCCCCCCCCceEEEEecC
Confidence            67899999999999999999994  444333    44556665 64 44443322334566665544

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=98.77  E-value=2.1e-08  Score=96.91  Aligned_cols=104  Identities=13%  Similarity=0.095  Sum_probs=82.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      +.+||.||+|.|.++..+.+....+|++||+++.+++.|++.+... ..++++++++|+.++-                 
T Consensus        47 ~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------------  109 (267)
T 3kkz_A           47 KSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLP-----------------  109 (267)
T ss_dssp             TCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC-----------------
T ss_pred             CCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCC-----------------
Confidence            5799999999999999999886679999999999999999876321 2467999999985531                 


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVI  407 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~  407 (478)
                                   ....+||+|++.-  .     +    ..+-...+++.+++.|+|||.+++...
T Consensus       110 -------------~~~~~fD~i~~~~--~-----~----~~~~~~~~l~~~~~~LkpgG~l~~~~~  151 (267)
T 3kkz_A          110 -------------FRNEELDLIWSEG--A-----I----YNIGFERGLNEWRKYLKKGGYLAVSEC  151 (267)
T ss_dssp             -------------CCTTCEEEEEESS--C-----G----GGTCHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             -------------CCCCCEEEEEEcC--C-----c----eecCHHHHHHHHHHHcCCCCEEEEEEe
Confidence                         1356899999831  0     1    112347899999999999999998653

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=98.77  E-value=5.6e-08  Score=100.42  Aligned_cols=119  Identities=20%  Similarity=0.126  Sum_probs=87.1

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCC--CCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLED--GEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~--d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.+|+|.|+++..+......+|++||+++..++.|++.+....  +++++++.+|+.+++.....           
T Consensus       221 ~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~-----------  289 (396)
T 3c0k_A          221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRD-----------  289 (396)
T ss_dssp             TCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHH-----------
T ss_pred             CCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHh-----------
Confidence            46999999999999998887644699999999999999998875432  23799999999999876432           


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCC-CCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDAR-NGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~-~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                     ...+||+|++|....... ..+.  ...-.-.+++..+.+.|+|||++++...+.
T Consensus       290 ---------------~~~~fD~Ii~dpP~~~~~~~~~~--~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  342 (396)
T 3c0k_A          290 ---------------RGEKFDVIVMDPPKFVENKSQLM--GACRGYKDINMLAIQLLNEGGILLTFSCSG  342 (396)
T ss_dssp             ---------------TTCCEEEEEECCSSTTTCSSSSS--CCCTHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             ---------------cCCCCCEEEECCCCCCCChhHHH--HHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence                           246799999985221100 0000  000123678999999999999999866554

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=98.77  E-value=4.8e-08  Score=91.07  Aligned_cols=144  Identities=15%  Similarity=0.108  Sum_probs=99.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.||+|.|.++..+.+..  ..+|++||+++.+++.|++.+....-++++++.+|+.++-                
T Consensus        38 ~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~----------------  101 (219)
T 3dh0_A           38 GMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIP----------------  101 (219)
T ss_dssp             TCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCS----------------
T ss_pred             CCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCC----------------
Confidence            5699999999999998888874  5799999999999999998864222247999999986541                


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCc---------
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNR---------  411 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~---------  411 (478)
                                    ..+.+||+|++...       +...+   ....+++.+++.|+|||.+++..+....         
T Consensus       102 --------------~~~~~fD~v~~~~~-------l~~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~  157 (219)
T 3dh0_A          102 --------------LPDNTVDFIFMAFT-------FHELS---EPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEE  157 (219)
T ss_dssp             --------------SCSSCEEEEEEESC-------GGGCS---SHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGG
T ss_pred             --------------CCCCCeeEEEeehh-------hhhcC---CHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhc
Confidence                          14568999998421       10011   2378999999999999999986543211         


Q ss_pred             -hHHHHHHHHHHHh-cCccEEEeecccceEEEEEEcCC
Q 038592          412 -SFYDMLIQEFRDV-FQELYEIDVGNEENFVLIATGLS  447 (478)
Q Consensus       412 -~~~~~v~~~l~~v-F~~v~~~~v~~~~N~Vl~a~~~~  447 (478)
                       -..+.+.+.+++. |..+....... ....+++.+..
T Consensus       158 ~~~~~~~~~~l~~~Gf~~~~~~~~~~-~~~~~~~~k~~  194 (219)
T 3dh0_A          158 VYSEWEVGLILEDAGIRVGRVVEVGK-YCFGVYAMIVK  194 (219)
T ss_dssp             SCCHHHHHHHHHHTTCEEEEEEEETT-TEEEEEEECC-
T ss_pred             ccCHHHHHHHHHHCCCEEEEEEeeCC-ceEEEEEEecc
Confidence             0134556666665 66555444443 46666776543

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=98.77  E-value=4.5e-09  Score=98.43  Aligned_cols=101  Identities=16%  Similarity=0.180  Sum_probs=75.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC------------CCCCeEEEEchHHHHHHHHHhh
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE------------DGEFLQVSVGDAIEFLEKLARQ  330 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~------------~d~rl~v~v~Dg~~~l~~~~~~  330 (478)
                      ..+||.+|||.|..+.+|.+. +.+|++||+++.+++.|++..+..            ..++++++++|+.++-..    
T Consensus        23 ~~~vLD~GCG~G~~~~~la~~-g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~----   97 (203)
T 1pjz_A           23 GARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR----   97 (203)
T ss_dssp             TCEEEETTTCCSHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH----
T ss_pred             CCEEEEeCCCCcHhHHHHHHC-CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc----
Confidence            579999999999999999886 679999999999999999876541            135799999998765211    


Q ss_pred             hcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcE
Q 038592          331 IVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGI  401 (478)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gi  401 (478)
                                               ...+||+|+.-. .      +...|.. ....+++.+++.|+|||.
T Consensus        98 -------------------------~~~~fD~v~~~~-~------l~~l~~~-~~~~~l~~~~r~LkpgG~  135 (203)
T 1pjz_A           98 -------------------------DIGHCAAFYDRA-A------MIALPAD-MRERYVQHLEALMPQACS  135 (203)
T ss_dssp             -------------------------HHHSEEEEEEES-C------GGGSCHH-HHHHHHHHHHHHSCSEEE
T ss_pred             -------------------------cCCCEEEEEECc-c------hhhCCHH-HHHHHHHHHHHHcCCCcE
Confidence                                     014699998621 0      1101111 235689999999999997

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=98.77  E-value=1.2e-08  Score=97.18  Aligned_cols=105  Identities=24%  Similarity=0.209  Sum_probs=79.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      +.+||.||+|.|.++..|.+....+|++||+++.+++.|++.+......+++++.+|+.++.                  
T Consensus        80 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~------------------  141 (241)
T 2ex4_A           80 TSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFT------------------  141 (241)
T ss_dssp             CSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCC------------------
T ss_pred             CCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcC------------------
Confidence            57999999999999988877666799999999999999999875432346899999976541                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                  ....+||+|+++-.    ...+  +..  .-..+++.+++.|+|||.+++.
T Consensus       142 ------------~~~~~fD~v~~~~~----l~~~--~~~--~~~~~l~~~~~~LkpgG~l~i~  184 (241)
T 2ex4_A          142 ------------PEPDSYDVIWIQWV----IGHL--TDQ--HLAEFLRRCKGSLRPNGIIVIK  184 (241)
T ss_dssp             ------------CCSSCEEEEEEESC----GGGS--CHH--HHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ------------CCCCCEEEEEEcch----hhhC--CHH--HHHHHHHHHHHhcCCCeEEEEE
Confidence                        13457999998621    0000  100  0147999999999999999883

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=98.77  E-value=1.3e-08  Score=99.38  Aligned_cols=107  Identities=14%  Similarity=0.165  Sum_probs=84.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCC-CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLED-GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~-d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      +.+||.||+|.|.++..+.+. +.+|++||+++.+++.|++.+.-.. .++++++.+|+.+....               
T Consensus        69 ~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---------------  132 (285)
T 4htf_A           69 KLRVLDAGGGEGQTAIKMAER-GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASH---------------  132 (285)
T ss_dssp             CCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGG---------------
T ss_pred             CCEEEEeCCcchHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhh---------------
Confidence            569999999999999998887 7899999999999999998874322 36899999999876311               


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                    .+.+||+|++.-.       +...+   -...+++.+++.|+|||.+++....+
T Consensus       133 --------------~~~~fD~v~~~~~-------l~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~  176 (285)
T 4htf_A          133 --------------LETPVDLILFHAV-------LEWVA---DPRSVLQTLWSVLRPGGVLSLMFYNA  176 (285)
T ss_dssp             --------------CSSCEEEEEEESC-------GGGCS---CHHHHHHHHHHTEEEEEEEEEEEEBH
T ss_pred             --------------cCCCceEEEECch-------hhccc---CHHHHHHHHHHHcCCCeEEEEEEeCC
Confidence                          4578999998421       10011   12789999999999999999987654

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=98.76  E-value=3.6e-08  Score=94.33  Aligned_cols=103  Identities=17%  Similarity=0.201  Sum_probs=82.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      +.+||.||+|.|.++..+.+....+|++||+++.+++.|++.+.   .++++++.+|+.++-                  
T Consensus        45 ~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~------------------  103 (253)
T 3g5l_A           45 QKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT---SPVVCYEQKAIEDIA------------------  103 (253)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC---CTTEEEEECCGGGCC------------------
T ss_pred             CCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc---cCCeEEEEcchhhCC------------------
Confidence            67999999999999999988754499999999999999999986   578999999986531                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIP  408 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~  408 (478)
                                  ....+||+|++..    ....+   +   .-..+++.+++.|+|||.+++.+..
T Consensus       104 ------------~~~~~fD~v~~~~----~l~~~---~---~~~~~l~~~~~~LkpgG~l~~~~~~  147 (253)
T 3g5l_A          104 ------------IEPDAYNVVLSSL----ALHYI---A---SFDDICKKVYINLKSSGSFIFSVEH  147 (253)
T ss_dssp             ------------CCTTCEEEEEEES----CGGGC---S---CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ------------CCCCCeEEEEEch----hhhhh---h---hHHHHHHHHHHHcCCCcEEEEEeCC
Confidence                        1457899999942    11011   1   2378999999999999999987543

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=98.76  E-value=5.1e-08  Score=86.43  Aligned_cols=126  Identities=20%  Similarity=0.259  Sum_probs=87.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHH--HHHHhhhcCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFL--EKLARQIVGKNPDS  338 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l--~~~~~~~~~~~~~~  338 (478)
                      ..+||.+|+|.|.++..+.+..  +.+++++|+++ +++.          ++++++.+|..+.-  +.....        
T Consensus        23 ~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------~~~~~~~~d~~~~~~~~~~~~~--------   83 (180)
T 1ej0_A           23 GMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------VGVDFLQGDFRDELVMKALLER--------   83 (180)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------TTEEEEESCTTSHHHHHHHHHH--------
T ss_pred             CCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------CcEEEEEcccccchhhhhhhcc--------
Confidence            4699999999999999988874  58999999999 6532          57999999987651  111100        


Q ss_pred             CCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCC--------hHHHHHHHHHccCcCcEEEEEeCCCC
Q 038592          339 FGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFV--------RKDVLLAARLILSDFGIFVMNVIPPN  410 (478)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~--------~~efl~~~~~~L~~~Gilv~N~~~~~  410 (478)
                                      ....+||+|+.|..-..       .+....        ...+++.+++.|+|||.+++......
T Consensus        84 ----------------~~~~~~D~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  140 (180)
T 1ej0_A           84 ----------------VGDSKVQVVMSDMAPNM-------SGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE  140 (180)
T ss_dssp             ----------------HTTCCEEEEEECCCCCC-------CSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST
T ss_pred             ----------------CCCCceeEEEECCCccc-------cCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence                            03467999999632110       010000        16899999999999999998776543


Q ss_pred             chHHHHHHHHHHHhcCccEEEe
Q 038592          411 RSFYDMLIQEFRDVFQELYEID  432 (478)
Q Consensus       411 ~~~~~~v~~~l~~vF~~v~~~~  432 (478)
                      .  ...+...+++.|..+....
T Consensus       141 ~--~~~~~~~~~~~~~~~~~~~  160 (180)
T 1ej0_A          141 G--FDEYLREIRSLFTKVKVRK  160 (180)
T ss_dssp             T--HHHHHHHHHHHEEEEEEEC
T ss_pred             c--HHHHHHHHHHhhhhEEeec
Confidence            2  3456777888887665443

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=98.76  E-value=4.9e-08  Score=87.53  Aligned_cols=98  Identities=15%  Similarity=0.177  Sum_probs=77.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.+|+|.|.++..+.+... +|++||+++.+++.|++.     .++++++.+| ..                    
T Consensus        18 ~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-----~~~v~~~~~d-~~--------------------   70 (170)
T 3i9f_A           18 KGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEK-----FDSVITLSDP-KE--------------------   70 (170)
T ss_dssp             CEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHH-----CTTSEEESSG-GG--------------------
T ss_pred             CCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHh-----CCCcEEEeCC-CC--------------------
Confidence            46999999999999998887754 999999999999999988     3579999999 11                    


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                  ..+.+||+|++.-.       +...+   -...+++.+++.|+|||.+++..+..
T Consensus        71 ------------~~~~~~D~v~~~~~-------l~~~~---~~~~~l~~~~~~L~pgG~l~~~~~~~  115 (170)
T 3i9f_A           71 ------------IPDNSVDFILFANS-------FHDMD---DKQHVISEVKRILKDDGRVIIIDWRK  115 (170)
T ss_dssp             ------------SCTTCEEEEEEESC-------STTCS---CHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             ------------CCCCceEEEEEccc-------hhccc---CHHHHHHHHHHhcCCCCEEEEEEcCc
Confidence                        14678999998421       11011   24789999999999999999865443

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=98.76  E-value=4e-08  Score=101.29  Aligned_cols=140  Identities=16%  Similarity=0.163  Sum_probs=97.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcC---CCCCCCeEEEEchHHHHHHHHHhhhcCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFG---LEDGEFLQVSVGDAIEFLEKLARQIVGKNPDS  338 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg---~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~  338 (478)
                      ..+||.+|+|.|.++..+.+.. +.+|++||+++.+++.|++.+.   +....+++++.+|+.+.+              
T Consensus       223 ~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~--------------  288 (375)
T 4dcm_A          223 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV--------------  288 (375)
T ss_dssp             CSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTC--------------
T ss_pred             CCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccC--------------
Confidence            4799999999999999998875 7899999999999999998763   222236888999987642              


Q ss_pred             CCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHH
Q 038592          339 FGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLI  418 (478)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~  418 (478)
                                       ...+||+|++|.--  .. +. ..+. -...++++.+++.|+|||.+++-. .+....    .
T Consensus       289 -----------------~~~~fD~Ii~nppf--h~-~~-~~~~-~~~~~~l~~~~~~LkpgG~l~iv~-n~~~~~----~  341 (375)
T 4dcm_A          289 -----------------EPFRFNAVLCNPPF--HQ-QH-ALTD-NVAWEMFHHARRCLKINGELYIVA-NRHLDY----F  341 (375)
T ss_dssp             -----------------CTTCEEEEEECCCC-----------C-CHHHHHHHHHHHHEEEEEEEEEEE-ETTSCH----H
T ss_pred             -----------------CCCCeeEEEECCCc--cc-Cc-ccCH-HHHHHHHHHHHHhCCCCcEEEEEE-ECCcCH----H
Confidence                             45689999996310  00 00 0011 133579999999999999999833 333332    3


Q ss_pred             HHHHHhcCccEEEeecccceEEEEEE
Q 038592          419 QEFRDVFQELYEIDVGNEENFVLIAT  444 (478)
Q Consensus       419 ~~l~~vF~~v~~~~v~~~~N~Vl~a~  444 (478)
                      ..+++.|..+..+.-. ..-.|+-+.
T Consensus       342 ~~l~~~fg~~~~~a~~-~~F~V~~~~  366 (375)
T 4dcm_A          342 HKLKKIFGNCTTIATN-NKFVVLKAV  366 (375)
T ss_dssp             HHHHHHHSCCEEEEEC-SSEEEEEEE
T ss_pred             HHHHHhcCCEEEEeeC-CCEEEEEEc
Confidence            4677889887766532 234444444

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.76  E-value=1.7e-08  Score=95.71  Aligned_cols=110  Identities=15%  Similarity=0.108  Sum_probs=76.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCC---CCCeEEEEchHHHH--------------HH
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLED---GEFLQVSVGDAIEF--------------LE  325 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~---d~rl~v~v~Dg~~~--------------l~  325 (478)
                      +++||.+|.|  +.+.++.+..+.+|++||.|++..+.|+++|.-..   ..+++++++|+.+.              +.
T Consensus        31 a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~  108 (202)
T 3cvo_A           31 AEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYP  108 (202)
T ss_dssp             CSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTT
T ss_pred             CCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhHH
Confidence            5799999985  45556665447899999999999999999985321   56899999997542              11


Q ss_pred             HHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE-
Q 038592          326 KLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM-  404 (478)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~-  404 (478)
                      +.+...                  ..  .....+||+||+|.+.               ...++..+..+|++||++++ 
T Consensus       109 ~~~~~i------------------~~--~~~~~~fDlIfIDg~k---------------~~~~~~~~l~~l~~GG~Iv~D  153 (202)
T 3cvo_A          109 DYPLAV------------------WR--TEGFRHPDVVLVDGRF---------------RVGCALATAFSITRPVTLLFD  153 (202)
T ss_dssp             HHHHGG------------------GG--CTTCCCCSEEEECSSS---------------HHHHHHHHHHHCSSCEEEEET
T ss_pred             HHhhhh------------------hc--cccCCCCCEEEEeCCC---------------chhHHHHHHHhcCCCeEEEEe
Confidence            111000                  00  0023679999998631               13566777899999999998 


Q ss_pred             EeCCC
Q 038592          405 NVIPP  409 (478)
Q Consensus       405 N~~~~  409 (478)
                      |+..+
T Consensus       154 Nv~~r  158 (202)
T 3cvo_A          154 DYSQR  158 (202)
T ss_dssp             TGGGC
T ss_pred             CCcCC
Confidence            76544

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.75  E-value=3.1e-08  Score=94.29  Aligned_cols=102  Identities=21%  Similarity=0.331  Sum_probs=80.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.||+|.|.++..+.+. +.+|++||+++.+++.|++.        ++++.+|+.+++..                
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~--------~~~~~~d~~~~~~~----------------   96 (240)
T 3dli_A           42 CRRVLDIGCGRGEFLELCKEE-GIESIGVDINEDMIKFCEGK--------FNVVKSDAIEYLKS----------------   96 (240)
T ss_dssp             CSCEEEETCTTTHHHHHHHHH-TCCEEEECSCHHHHHHHHTT--------SEEECSCHHHHHHT----------------
T ss_pred             CCeEEEEeCCCCHHHHHHHhC-CCcEEEEECCHHHHHHHHhh--------cceeeccHHHHhhh----------------
Confidence            579999999999999888876 67899999999999999876        78999999998643                


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                  ..+.+||+|++.-    ....+  +++  .-..+++.+++.|+|||.+++.....
T Consensus        97 ------------~~~~~fD~i~~~~----~l~~~--~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~  143 (240)
T 3dli_A           97 ------------LPDKYLDGVMISH----FVEHL--DPE--RLFELLSLCYSKMKYSSYIVIESPNP  143 (240)
T ss_dssp             ------------SCTTCBSEEEEES----CGGGS--CGG--GHHHHHHHHHHHBCTTCCEEEEEECT
T ss_pred             ------------cCCCCeeEEEECC----chhhC--CcH--HHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence                        1457899999831    10001  111  12789999999999999999987665

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=98.75  E-value=6.1e-08  Score=100.06  Aligned_cols=115  Identities=22%  Similarity=0.245  Sum_probs=86.1

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCC-CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLED-GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~-d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.+|+|.|.++..+......+|++||+++.+++.|++.+.... +++++++.+|+.+++.....            
T Consensus       218 ~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~------------  285 (396)
T 2as0_A          218 GDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQK------------  285 (396)
T ss_dssp             TCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHH------------
T ss_pred             CCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHh------------
Confidence            46999999999999998887633599999999999999998875432 23799999999999865432            


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC-----ChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF-----VRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f-----~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                    ...+||+|++|...-.    .  .+...     .-.+++..+.+.|+|||++++...+.
T Consensus       286 --------------~~~~fD~Vi~dpP~~~----~--~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  338 (396)
T 2as0_A          286 --------------KGEKFDIVVLDPPAFV----Q--HEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ  338 (396)
T ss_dssp             --------------TTCCEEEEEECCCCSC----S--SGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred             --------------hCCCCCEEEECCCCCC----C--CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence                          3567999999742100    0  00011     13578899999999999988766554

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=98.75  E-value=6.1e-08  Score=93.34  Aligned_cols=97  Identities=20%  Similarity=0.183  Sum_probs=77.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      +.+||.||+|.|.++..|.+. +.+|++||+++.+++.|++.+.     +++++++|+.++-                  
T Consensus        51 ~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~-----~~~~~~~d~~~~~------------------  106 (263)
T 3pfg_A           51 AASLLDVACGTGMHLRHLADS-FGTVEGLELSADMLAIARRRNP-----DAVLHHGDMRDFS------------------  106 (263)
T ss_dssp             CCEEEEETCTTSHHHHHHTTT-SSEEEEEESCHHHHHHHHHHCT-----TSEEEECCTTTCC------------------
T ss_pred             CCcEEEeCCcCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCC-----CCEEEECChHHCC------------------
Confidence            579999999999999888876 5699999999999999999864     7899999987641                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC----ChHHHHHHHHHccCcCcEEEEEe
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF----VRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f----~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                   ...+||+|++..+.   .       ..+    ....+++.+++.|+|||.+++..
T Consensus       107 -------------~~~~fD~v~~~~~~---l-------~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~  151 (263)
T 3pfg_A          107 -------------LGRRFSAVTCMFSS---I-------GHLAGQAELDAALERFAAHVLPDGVVVVEP  151 (263)
T ss_dssp             -------------CSCCEEEEEECTTG---G-------GGSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             -------------ccCCcCEEEEcCch---h-------hhcCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence                         25689999983211   0       112    22578999999999999999864

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.75  E-value=4.4e-08  Score=92.26  Aligned_cols=104  Identities=18%  Similarity=0.186  Sum_probs=77.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      +.+||.||+|.|.++..+.+.. .+|+++|+++.+++.|++.+     ++++++.+|..++-                  
T Consensus        41 ~~~vLdiG~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~-----~~~~~~~~d~~~~~------------------   96 (239)
T 3bxo_A           41 ASSLLDVACGTGTHLEHFTKEF-GDTAGLELSEDMLTHARKRL-----PDATLHQGDMRDFR------------------   96 (239)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHH-SEEEEEESCHHHHHHHHHHC-----TTCEEEECCTTTCC------------------
T ss_pred             CCeEEEecccCCHHHHHHHHhC-CcEEEEeCCHHHHHHHHHhC-----CCCEEEECCHHHcc------------------
Confidence            5799999999999998888764 39999999999999999885     46899999986541                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                   ...+||+|++-...   ...+.. +.  ....+++.+++.|+|||.+++.....
T Consensus        97 -------------~~~~~D~v~~~~~~---~~~~~~-~~--~~~~~l~~~~~~L~pgG~l~~~~~~~  144 (239)
T 3bxo_A           97 -------------LGRKFSAVVSMFSS---VGYLKT-TE--ELGAAVASFAEHLEPGGVVVVEPWWF  144 (239)
T ss_dssp             -------------CSSCEEEEEECTTG---GGGCCS-HH--HHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred             -------------cCCCCcEEEEcCch---HhhcCC-HH--HHHHHHHHHHHhcCCCeEEEEEeccC
Confidence                         24579999962111   000100 01  22689999999999999999876544

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=98.75  E-value=1.4e-07  Score=84.60  Aligned_cols=113  Identities=16%  Similarity=0.103  Sum_probs=87.7

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.+|+|.|.++..+.+ ...+++++|+++.+++.|++.+....-++++++.+|+.+.+                  
T Consensus        36 ~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~------------------   96 (183)
T 2yxd_A           36 DDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVL------------------   96 (183)
T ss_dssp             TCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHG------------------
T ss_pred             CCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccc------------------
Confidence            56999999999999998887 67899999999999999998864222257999999998843                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHHH
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEFR  422 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l~  422 (478)
                                   ...+||+|+++..              -....+++.+++.  |||.+++.....  .....+.+.++
T Consensus        97 -------------~~~~~D~i~~~~~--------------~~~~~~l~~~~~~--~gG~l~~~~~~~--~~~~~~~~~l~  145 (183)
T 2yxd_A           97 -------------DKLEFNKAFIGGT--------------KNIEKIIEILDKK--KINHIVANTIVL--ENAAKIINEFE  145 (183)
T ss_dssp             -------------GGCCCSEEEECSC--------------SCHHHHHHHHHHT--TCCEEEEEESCH--HHHHHHHHHHH
T ss_pred             -------------cCCCCcEEEECCc--------------ccHHHHHHHHhhC--CCCEEEEEeccc--ccHHHHHHHHH
Confidence                         2357999999532              1347899999988  999999877544  33455666776


Q ss_pred             Hhc
Q 038592          423 DVF  425 (478)
Q Consensus       423 ~vF  425 (478)
                      +.-
T Consensus       146 ~~g  148 (183)
T 2yxd_A          146 SRG  148 (183)
T ss_dssp             HTT
T ss_pred             HcC
Confidence            663

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=98.74  E-value=1.3e-08  Score=99.72  Aligned_cols=113  Identities=18%  Similarity=0.179  Sum_probs=86.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhh-C-CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQ-L-DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~-~-~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      ..+||.+|+|.|.++..+.+. . +.+|++||+++.+++.|++.+... ..++++++.+|+.+++               
T Consensus       111 ~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~---------------  175 (275)
T 1yb2_A          111 GMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFI---------------  175 (275)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCC---------------
T ss_pred             cCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccC---------------
Confidence            469999999999999998886 3 689999999999999999887432 2467999999987632               


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHH
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQ  419 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~  419 (478)
                                      .+.+||+|++|+.+               ...+++.+++.|+|||.+++...+.  .....+.+
T Consensus       176 ----------------~~~~fD~Vi~~~~~---------------~~~~l~~~~~~LkpgG~l~i~~~~~--~~~~~~~~  222 (275)
T 1yb2_A          176 ----------------SDQMYDAVIADIPD---------------PWNHVQKIASMMKPGSVATFYLPNF--DQSEKTVL  222 (275)
T ss_dssp             ----------------CSCCEEEEEECCSC---------------GGGSHHHHHHTEEEEEEEEEEESSH--HHHHHHHH
T ss_pred             ----------------cCCCccEEEEcCcC---------------HHHHHHHHHHHcCCCCEEEEEeCCH--HHHHHHHH
Confidence                            34679999995421               1468999999999999999877543  22334445


Q ss_pred             HHHH
Q 038592          420 EFRD  423 (478)
Q Consensus       420 ~l~~  423 (478)
                      .+++
T Consensus       223 ~l~~  226 (275)
T 1yb2_A          223 SLSA  226 (275)
T ss_dssp             HSGG
T ss_pred             HHHH
Confidence            5544

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=98.74  E-value=2.3e-08  Score=98.66  Aligned_cols=109  Identities=18%  Similarity=0.162  Sum_probs=83.1

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||+|.|.++..+.+..+.+|++||+++.+++.|++.+.-. ..++++++.+|..++                  
T Consensus        73 ~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------------------  134 (302)
T 3hem_A           73 GMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF------------------  134 (302)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC------------------
T ss_pred             cCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc------------------
Confidence            4699999999999999998876689999999999999999886421 235899999998654                  


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCC----CCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAP----PVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~P----p~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                     +.+||+|+...    ....+..|    +.. .-..+++.+++.|+|||.+++.....
T Consensus       135 ---------------~~~fD~v~~~~----~~~~~~d~~~~~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~  186 (302)
T 3hem_A          135 ---------------DEPVDRIVSLG----AFEHFADGAGDAGFE-RYDTFFKKFYNLTPDDGRMLLHTITI  186 (302)
T ss_dssp             ---------------CCCCSEEEEES----CGGGTTCCSSCCCTT-HHHHHHHHHHHSSCTTCEEEEEEEEC
T ss_pred             ---------------CCCccEEEEcc----hHHhcCccccccchh-HHHHHHHHHHHhcCCCcEEEEEEEec
Confidence                           35699999841    11111111    111 23689999999999999999977655

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=98.74  E-value=3.3e-08  Score=94.47  Aligned_cols=103  Identities=12%  Similarity=0.105  Sum_probs=81.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC-CCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL-EDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~-~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||+|.|.++..+.+..+.+|++||+++.+++.|++.+.- ...++++++++|+.++-                 
T Consensus        47 ~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------------  109 (257)
T 3f4k_A           47 DAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLP-----------------  109 (257)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCS-----------------
T ss_pred             CCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCC-----------------
Confidence            469999999999999999988766999999999999999987632 12457999999985430                 


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                   ..+.+||+|++.--       +    .++-...+++.+++.|+|||.+++..
T Consensus       110 -------------~~~~~fD~v~~~~~-------l----~~~~~~~~l~~~~~~L~pgG~l~~~~  150 (257)
T 3f4k_A          110 -------------FQNEELDLIWSEGA-------I----YNIGFERGMNEWSKYLKKGGFIAVSE  150 (257)
T ss_dssp             -------------SCTTCEEEEEEESC-------S----CCCCHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             -------------CCCCCEEEEEecCh-------H----hhcCHHHHHHHHHHHcCCCcEEEEEE
Confidence                         14578999998521       1    11234789999999999999999865

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=98.74  E-value=1.4e-07  Score=91.40  Aligned_cols=141  Identities=18%  Similarity=0.215  Sum_probs=102.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.+|+|+|.++..|.+..  ..+|.+||++|.+++.|++...  ..+++..+.+|+...-.-              
T Consensus        78 G~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~--~~~ni~~V~~d~~~p~~~--------------  141 (233)
T 4df3_A           78 GDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVR--DRRNIFPILGDARFPEKY--------------  141 (233)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHST--TCTTEEEEESCTTCGGGG--------------
T ss_pred             CCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhH--hhcCeeEEEEeccCcccc--------------
Confidence            4699999999999999999874  5799999999999999998764  346789999987653110              


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC-------CchH
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP-------NRSF  413 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~-------~~~~  413 (478)
                                   ......+|+|+.|+...+            ....++.++++.|+|||.+++-+..+       ....
T Consensus       142 -------------~~~~~~vDvVf~d~~~~~------------~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~  196 (233)
T 4df3_A          142 -------------RHLVEGVDGLYADVAQPE------------QAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEV  196 (233)
T ss_dssp             -------------TTTCCCEEEEEECCCCTT------------HHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHH
T ss_pred             -------------ccccceEEEEEEeccCCh------------hHHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHH
Confidence                         124567999999864321            23679999999999999999865433       3345


Q ss_pred             HHHHHHHHHHh-cCccEEEeecc--cceEEEEEE
Q 038592          414 YDMLIQEFRDV-FQELYEIDVGN--EENFVLIAT  444 (478)
Q Consensus       414 ~~~v~~~l~~v-F~~v~~~~v~~--~~N~Vl~a~  444 (478)
                      +++.++.|++. |.-+-.+....  ..+.++|+.
T Consensus       197 ~~~ev~~L~~~GF~l~e~i~L~pf~~~H~lv~~~  230 (233)
T 4df3_A          197 YKREIKTLMDGGLEIKDVVHLDPFDRDHAMIYAV  230 (233)
T ss_dssp             HHHHHHHHHHTTCCEEEEEECTTTSTTEEEEEEC
T ss_pred             HHHHHHHHHHCCCEEEEEEccCCCCCceEEEEEE
Confidence            56667777765 76555555432  335555553

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=98.74  E-value=5e-08  Score=94.70  Aligned_cols=119  Identities=20%  Similarity=0.194  Sum_probs=88.6

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.+|+|.|.++..+.+. +.+|++||+||.+++.|++.+....-. ++++.+|..+.+                  
T Consensus       121 ~~~VLDiGcG~G~l~~~la~~-g~~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~~~~~------------------  180 (254)
T 2nxc_A          121 GDKVLDLGTGSGVLAIAAEKL-GGKALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAAL------------------  180 (254)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT-TCEEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHHG------------------
T ss_pred             CCEEEEecCCCcHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChhhcC------------------
Confidence            579999999999999888875 349999999999999999876432222 899999998853                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHHH
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEFR  422 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l~  422 (478)
                                   ...+||+|+.+...            + .-..++..+++.|+|||.+++.-...  ...+.+.+.++
T Consensus       181 -------------~~~~fD~Vv~n~~~------------~-~~~~~l~~~~~~LkpgG~lils~~~~--~~~~~v~~~l~  232 (254)
T 2nxc_A          181 -------------PFGPFDLLVANLYA------------E-LHAALAPRYREALVPGGRALLTGILK--DRAPLVREAMA  232 (254)
T ss_dssp             -------------GGCCEEEEEEECCH------------H-HHHHHHHHHHHHEEEEEEEEEEEEEG--GGHHHHHHHHH
T ss_pred             -------------cCCCCCEEEECCcH------------H-HHHHHHHHHHHHcCCCCEEEEEeecc--CCHHHHHHHHH
Confidence                         23579999986311            1 12679999999999999999854333  22455666676


Q ss_pred             Hh-cCccE
Q 038592          423 DV-FQELY  429 (478)
Q Consensus       423 ~v-F~~v~  429 (478)
                      +. |..+.
T Consensus       233 ~~Gf~~~~  240 (254)
T 2nxc_A          233 GAGFRPLE  240 (254)
T ss_dssp             HTTCEEEE
T ss_pred             HCCCEEEE
Confidence            65 65433

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=98.73  E-value=4.3e-08  Score=101.28  Aligned_cols=140  Identities=24%  Similarity=0.176  Sum_probs=97.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.+|+|.|.++..+.+. +.+|++||+|+.+++.|++.+... .-.++++.+|+.++..                 
T Consensus       234 ~~~VLDlGcG~G~~~~~la~~-g~~V~gvDis~~al~~A~~n~~~~-~~~v~~~~~D~~~~~~-----------------  294 (381)
T 3dmg_A          234 GRQVLDLGAGYGALTLPLARM-GAEVVGVEDDLASVLSLQKGLEAN-ALKAQALHSDVDEALT-----------------  294 (381)
T ss_dssp             TCEEEEETCTTSTTHHHHHHT-TCEEEEEESBHHHHHHHHHHHHHT-TCCCEEEECSTTTTSC-----------------
T ss_pred             CCEEEEEeeeCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHc-CCCeEEEEcchhhccc-----------------
Confidence            469999999999999988876 679999999999999999886432 1238999999987631                 


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHHH
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEFR  422 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l~  422 (478)
                                   ...+||+|+++.--..   +....  .-....+++.+++.|+|||.+++-.... ..    .-..+.
T Consensus       295 -------------~~~~fD~Ii~npp~~~---~~~~~--~~~~~~~l~~~~~~LkpGG~l~iv~n~~-l~----~~~~l~  351 (381)
T 3dmg_A          295 -------------EEARFDIIVTNPPFHV---GGAVI--LDVAQAFVNVAAARLRPGGVFFLVSNPF-LK----YEPLLE  351 (381)
T ss_dssp             -------------TTCCEEEEEECCCCCT---TCSSC--CHHHHHHHHHHHHHEEEEEEEEEEECTT-SC----HHHHHH
T ss_pred             -------------cCCCeEEEEECCchhh---ccccc--HHHHHHHHHHHHHhcCcCcEEEEEEcCC-CC----hHHHHH
Confidence                         2468999999531110   00000  0123689999999999999999865433 22    234577


Q ss_pred             HhcCccEEEeecccceEEEEEEcC
Q 038592          423 DVFQELYEIDVGNEENFVLIATGL  446 (478)
Q Consensus       423 ~vF~~v~~~~v~~~~N~Vl~a~~~  446 (478)
                      +.|..+..+  .+..=.|+-+.+.
T Consensus       352 ~~f~~v~~l--~~~gF~Vl~a~~~  373 (381)
T 3dmg_A          352 EKFGAFQTL--KVAEYKVLFAEKR  373 (381)
T ss_dssp             HHHSCCEEE--EESSSEEEEEECC
T ss_pred             HhhccEEEE--eCCCEEEEEEEEe
Confidence            889988777  3323345555443

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=98.73  E-value=3.3e-08  Score=97.93  Aligned_cols=108  Identities=14%  Similarity=0.062  Sum_probs=80.5

Q ss_pred             CCeEEEEeCchhHHHHHHH--hhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLR--TQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~--~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      +.+||.||+|.|..+..+.  ..++.+|++||+++.+++.|++.+... ..++++++.+|+.++-               
T Consensus       119 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------------  183 (305)
T 3ocj_A          119 GCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLD---------------  183 (305)
T ss_dssp             TCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCC---------------
T ss_pred             CCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCC---------------
Confidence            5799999999999998884  345789999999999999999987533 2457999999988641               


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCC
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIP  408 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~  408 (478)
                                      ...+||+|++..  .     +..-|..-....+++.+++.|+|||.+++....
T Consensus       184 ----------------~~~~fD~v~~~~--~-----~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  229 (305)
T 3ocj_A          184 ----------------TREGYDLLTSNG--L-----NIYEPDDARVTELYRRFWQALKPGGALVTSFLT  229 (305)
T ss_dssp             ----------------CCSCEEEEECCS--S-----GGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             ----------------ccCCeEEEEECC--h-----hhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecC
Confidence                            237899999731  0     000011111234899999999999999987754

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=98.73  E-value=3.1e-08  Score=94.71  Aligned_cols=106  Identities=14%  Similarity=0.163  Sum_probs=83.1

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.||+|.|.++..+.+..+.+|++||+++.+++.|++.+...  ++++++++|+.+.-                  
T Consensus        56 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~------------------  115 (266)
T 3ujc_A           56 NSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN--NKIIFEANDILTKE------------------  115 (266)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC--TTEEEEECCTTTCC------------------
T ss_pred             CCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEECccccCC------------------
Confidence            5699999999999999998866789999999999999999987643  78999999987540                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIP  408 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~  408 (478)
                                  ..+.+||+|+..-    ....+  |+.  .-..+++.+++.|+|||.+++....
T Consensus       116 ------------~~~~~fD~v~~~~----~l~~~--~~~--~~~~~l~~~~~~L~pgG~l~~~~~~  161 (266)
T 3ujc_A          116 ------------FPENNFDLIYSRD----AILAL--SLE--NKNKLFQKCYKWLKPTGTLLITDYC  161 (266)
T ss_dssp             ------------CCTTCEEEEEEES----CGGGS--CHH--HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             ------------CCCCcEEEEeHHH----HHHhc--ChH--HHHHHHHHHHHHcCCCCEEEEEEec
Confidence                        1467899999841    10001  111  2378999999999999999986543

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=98.73  E-value=3.5e-08  Score=92.35  Aligned_cols=103  Identities=16%  Similarity=0.087  Sum_probs=78.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCC-----CCCeEEEEchHHHHHHHHHhhhcCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLED-----GEFLQVSVGDAIEFLEKLARQIVGKNP  336 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~-----d~rl~v~v~Dg~~~l~~~~~~~~~~~~  336 (478)
                      +.+||.||+|.|.++..+.+.. ..+|++||+++.+++.|++.+....     .++++++.+|.... .           
T Consensus        30 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-~-----------   97 (217)
T 3jwh_A           30 ARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQ-D-----------   97 (217)
T ss_dssp             CCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSC-C-----------
T ss_pred             CCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccc-c-----------
Confidence            5799999999999999998875 4799999999999999999875332     13899999996311 0           


Q ss_pred             CCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCC---hHHHHHHHHHccCcCcEEEEEe
Q 038592          337 DSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFV---RKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~---~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                        ....+||+|++.-    .   +    ..+-   -..+++.+++.|+|||++++..
T Consensus        98 ------------------~~~~~fD~v~~~~----~---l----~~~~~~~~~~~l~~~~~~LkpgG~li~~~  141 (217)
T 3jwh_A           98 ------------------KRFHGYDAATVIE----V---I----EHLDLSRLGAFERVLFEFAQPKIVIVTTP  141 (217)
T ss_dssp             ------------------GGGCSCSEEEEES----C---G----GGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred             ------------------ccCCCcCEEeeHH----H---H----HcCCHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence                              1346799999731    1   0    1121   1589999999999999887643

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=98.72  E-value=1.9e-08  Score=94.86  Aligned_cols=101  Identities=14%  Similarity=0.048  Sum_probs=80.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      +.+||.||+|.|.++..+.+. ..+|++||+++.+++.|++.+..    +++++++|+.++.                  
T Consensus        43 ~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~----~v~~~~~d~~~~~------------------   99 (250)
T 2p7i_A           43 PGNLLELGSFKGDFTSRLQEH-FNDITCVEASEEAISHAQGRLKD----GITYIHSRFEDAQ------------------   99 (250)
T ss_dssp             SSCEEEESCTTSHHHHHHTTT-CSCEEEEESCHHHHHHHHHHSCS----CEEEEESCGGGCC------------------
T ss_pred             CCcEEEECCCCCHHHHHHHHh-CCcEEEEeCCHHHHHHHHHhhhC----CeEEEEccHHHcC------------------
Confidence            568999999999999988875 35899999999999999998753    7999999987651                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHH-HccCcCcEEEEEeCCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAAR-LILSDFGIFVMNVIPP  409 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~-~~L~~~Gilv~N~~~~  409 (478)
                                   .+.+||+|++--    ....+   +   -...+|+.++ +.|+|||.+++.....
T Consensus       100 -------------~~~~fD~v~~~~----~l~~~---~---~~~~~l~~~~~~~LkpgG~l~i~~~~~  144 (250)
T 2p7i_A          100 -------------LPRRYDNIVLTH----VLEHI---D---DPVALLKRINDDWLAEGGRLFLVCPNA  144 (250)
T ss_dssp             -------------CSSCEEEEEEES----CGGGC---S---SHHHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred             -------------cCCcccEEEEhh----HHHhh---c---CHHHHHHHHHHHhcCCCCEEEEEcCCh
Confidence                         456799999831    10011   1   1268999999 9999999999977554

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.72  E-value=2.9e-08  Score=94.34  Aligned_cols=117  Identities=18%  Similarity=0.128  Sum_probs=87.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC-CCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL-EDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~-~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||++|+|.|.++..+.+. ..+|+++|+++.+++.|++.+.. ..+++++++.+|..+..                 
T Consensus        92 ~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------------  153 (248)
T 2yvl_A           92 EKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAE-----------------  153 (248)
T ss_dssp             TCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSC-----------------
T ss_pred             CCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcc-----------------
Confidence            469999999999999988887 78999999999999999987632 12367999999987542                 


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHH
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEF  421 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l  421 (478)
                                   .....||+|+.|..               ....+++.+.+.|+|||.+++...+.  +....+...+
T Consensus       154 -------------~~~~~~D~v~~~~~---------------~~~~~l~~~~~~L~~gG~l~~~~~~~--~~~~~~~~~l  203 (248)
T 2yvl_A          154 -------------VPEGIFHAAFVDVR---------------EPWHYLEKVHKSLMEGAPVGFLLPTA--NQVIKLLESI  203 (248)
T ss_dssp             -------------CCTTCBSEEEECSS---------------CGGGGHHHHHHHBCTTCEEEEEESSH--HHHHHHHHHS
T ss_pred             -------------cCCCcccEEEECCc---------------CHHHHHHHHHHHcCCCCEEEEEeCCH--HHHHHHHHHH
Confidence                         02357999999532               11468899999999999999877654  2334445555


Q ss_pred             HHhcCc
Q 038592          422 RDVFQE  427 (478)
Q Consensus       422 ~~vF~~  427 (478)
                      ++.|..
T Consensus       204 ~~~f~~  209 (248)
T 2yvl_A          204 ENYFGN  209 (248)
T ss_dssp             TTTEEE
T ss_pred             HhhCCc
Confidence            544543

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=98.72  E-value=9e-09  Score=101.40  Aligned_cols=117  Identities=16%  Similarity=0.129  Sum_probs=89.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.+|+|.|.++..+.+....+|++||++|.+++.|++.+... -+++++++.+|+.++.                 
T Consensus       126 ~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~-----------------  188 (278)
T 2frn_A          126 DELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-----------------  188 (278)
T ss_dssp             TCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-----------------
T ss_pred             CCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhc-----------------
Confidence            4699999999999999888875348999999999999999876432 2356999999998773                 


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC----CchHHHHH
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP----NRSFYDML  417 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~----~~~~~~~v  417 (478)
                                    ...+||+|++|.            |.  ...+++..+.+.|+|||++++...++    .....+.+
T Consensus       189 --------------~~~~fD~Vi~~~------------p~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i  240 (278)
T 2frn_A          189 --------------GENIADRILMGY------------VV--RTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETF  240 (278)
T ss_dssp             --------------CCSCEEEEEECC------------CS--SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHH
T ss_pred             --------------ccCCccEEEECC------------ch--hHHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHH
Confidence                          356799999952            21  23679999999999999999855443    23445555


Q ss_pred             HHHHHHh
Q 038592          418 IQEFRDV  424 (478)
Q Consensus       418 ~~~l~~v  424 (478)
                      .+.+++.
T Consensus       241 ~~~~~~~  247 (278)
T 2frn_A          241 KRITKEY  247 (278)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHc
Confidence            5555554

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=98.71  E-value=1.1e-07  Score=88.32  Aligned_cols=122  Identities=15%  Similarity=0.123  Sum_probs=88.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.||+|.|.++..+.+. +.+|++||+++.+++.|++.+      +++++.+|..+.                   
T Consensus        44 ~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~------~~~~~~~d~~~~-------------------   97 (211)
T 3e23_A           44 GAKILELGCGAGYQAEAMLAA-GFDVDATDGSPELAAEASRRL------GRPVRTMLFHQL-------------------   97 (211)
T ss_dssp             TCEEEESSCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHH------TSCCEECCGGGC-------------------
T ss_pred             CCcEEEECCCCCHHHHHHHHc-CCeEEEECCCHHHHHHHHHhc------CCceEEeeeccC-------------------
Confidence            569999999999999988876 679999999999999999987      356777887543                   


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCc-----------
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNR-----------  411 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~-----------  411 (478)
                                  ....+||+|++.-    .   +..-+.. .-..+++.+++.|+|||.+++.+.....           
T Consensus        98 ------------~~~~~fD~v~~~~----~---l~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  157 (211)
T 3e23_A           98 ------------DAIDAYDAVWAHA----C---LLHVPRD-ELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYN  157 (211)
T ss_dssp             ------------CCCSCEEEEEECS----C---GGGSCHH-HHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEEC
T ss_pred             ------------CCCCcEEEEEecC----c---hhhcCHH-HHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhcc
Confidence                        1457899999831    0   1000100 1257999999999999999987654321           


Q ss_pred             -hHHHHHHHHHHHh--cCccEE
Q 038592          412 -SFYDMLIQEFRDV--FQELYE  430 (478)
Q Consensus       412 -~~~~~v~~~l~~v--F~~v~~  430 (478)
                       --.+.+.+.+++.  |..+..
T Consensus       158 ~~~~~~~~~~l~~aG~f~~~~~  179 (211)
T 3e23_A          158 YPSEEWLRARYAEAGTWASVAV  179 (211)
T ss_dssp             CCCHHHHHHHHHHHCCCSEEEE
T ss_pred             CCCHHHHHHHHHhCCCcEEEEE
Confidence             1245566667765  775543

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.71  E-value=6.1e-08  Score=90.11  Aligned_cols=103  Identities=24%  Similarity=0.331  Sum_probs=80.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      +.+||.||+|.|.++..+.+. +.+|++||+++.+++.|++.      .+++++.+|..++....               
T Consensus        53 ~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~---------------  110 (227)
T 3e8s_A           53 PERVLDLGCGEGWLLRALADR-GIEAVGVDGDRTLVDAARAA------GAGEVHLASYAQLAEAK---------------  110 (227)
T ss_dssp             CSEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHT------CSSCEEECCHHHHHTTC---------------
T ss_pred             CCEEEEeCCCCCHHHHHHHHC-CCEEEEEcCCHHHHHHHHHh------cccccchhhHHhhcccc---------------
Confidence            579999999999999988877 77999999999999999987      45778999988763210               


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                 .....+||+|++...       +. .+   --..+++.+++.|+|||.+++....+
T Consensus       111 -----------~~~~~~fD~v~~~~~-------l~-~~---~~~~~l~~~~~~L~pgG~l~~~~~~~  155 (227)
T 3e8s_A          111 -----------VPVGKDYDLICANFA-------LL-HQ---DIIELLSAMRTLLVPGGALVIQTLHP  155 (227)
T ss_dssp             -----------SCCCCCEEEEEEESC-------CC-SS---CCHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             -----------cccCCCccEEEECch-------hh-hh---hHHHHHHHHHHHhCCCeEEEEEecCc
Confidence                       013456999998421       11 01   22689999999999999999977543

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=98.70  E-value=3.3e-08  Score=90.31  Aligned_cols=102  Identities=15%  Similarity=0.176  Sum_probs=77.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      +.+||.||+|.|.++..+.+. +.+|++||+++.+++.|++.+....-++++++.+|..++-                  
T Consensus        33 ~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~------------------   93 (199)
T 2xvm_A           33 PGKTLDLGCGNGRNSLYLAAN-GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLT------------------   93 (199)
T ss_dssp             SCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCC------------------
T ss_pred             CCeEEEEcCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCC------------------
Confidence            569999999999999988877 7799999999999999998764222246999999987641                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                   ...+||+|+....-    ..+  ++.  ....+++.+++.|+|||.+++
T Consensus        94 -------------~~~~~D~v~~~~~l----~~~--~~~--~~~~~l~~~~~~L~~gG~l~~  134 (199)
T 2xvm_A           94 -------------FDRQYDFILSTVVL----MFL--EAK--TIPGLIANMQRCTKPGGYNLI  134 (199)
T ss_dssp             -------------CCCCEEEEEEESCG----GGS--CGG--GHHHHHHHHHHTEEEEEEEEE
T ss_pred             -------------CCCCceEEEEcchh----hhC--CHH--HHHHHHHHHHHhcCCCeEEEE
Confidence                         25679999984210    000  111  237899999999999999765

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=98.70  E-value=7e-08  Score=96.87  Aligned_cols=132  Identities=20%  Similarity=0.197  Sum_probs=91.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.+|+|.|..+..|.+..  ..+|+++|+++.+++.|++.+....-++++++.+|+.++..               
T Consensus       119 g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~---------------  183 (315)
T 1ixk_A          119 GEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGE---------------  183 (315)
T ss_dssp             TCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGG---------------
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhccc---------------
Confidence            4699999999999999888875  37999999999999999987632112369999999987631               


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCC-CCCCCCC-------------ChHHHHHHHHHccCcCcEEEEEe
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGT-SAPPVEF-------------VRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~-s~Pp~~f-------------~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                     ...+||+|++|+..+..  |+ .--|...             ....+|+.+.+.|+|||.+++..
T Consensus       184 ---------------~~~~fD~Il~d~Pcsg~--g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~st  246 (315)
T 1ixk_A          184 ---------------LNVEFDKILLDAPCTGS--GTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYST  246 (315)
T ss_dssp             ---------------GCCCEEEEEEECCTTST--TTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ---------------ccccCCEEEEeCCCCCc--ccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence                           23579999999753311  21 1112110             12589999999999999999877


Q ss_pred             CCCCchHHHHHHHHHHHhcC
Q 038592          407 IPPNRSFYDMLIQEFRDVFQ  426 (478)
Q Consensus       407 ~~~~~~~~~~v~~~l~~vF~  426 (478)
                      .+..++.-..++..+.+-++
T Consensus       247 cs~~~~Ene~~v~~~l~~~~  266 (315)
T 1ixk_A          247 CSLEPEENEFVIQWALDNFD  266 (315)
T ss_dssp             SCCCGGGTHHHHHHHHHHSS
T ss_pred             CCCChHHhHHHHHHHHhcCC
Confidence            66544333444444444344

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=98.70  E-value=6.6e-08  Score=92.94  Aligned_cols=102  Identities=21%  Similarity=0.336  Sum_probs=77.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.||+|.|.++..|.+.. .+|++||+++.+++.|++.+.-..-++++++++|+.++-                  
T Consensus        38 ~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~------------------   98 (260)
T 1vl5_A           38 NEEVLDVATGGGHVANAFAPFV-KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP------------------   98 (260)
T ss_dssp             CCEEEEETCTTCHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCC------------------
T ss_pred             CCEEEEEeCCCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCC------------------
Confidence            5799999999999999888764 499999999999999998763222257999999986530                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                  ..+..||+|+....-    ..+   +   -...+|+.+++.|+|||.+++-
T Consensus        99 ------------~~~~~fD~V~~~~~l----~~~---~---d~~~~l~~~~r~LkpgG~l~~~  139 (260)
T 1vl5_A           99 ------------FTDERFHIVTCRIAA----HHF---P---NPASFVSEAYRVLKKGGQLLLV  139 (260)
T ss_dssp             ------------SCTTCEEEEEEESCG----GGC---S---CHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ------------CCCCCEEEEEEhhhh----Hhc---C---CHHHHHHHHHHHcCCCCEEEEE
Confidence                        145789999984210    001   1   1368999999999999999874

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=98.70  E-value=5.7e-08  Score=92.76  Aligned_cols=101  Identities=16%  Similarity=0.134  Sum_probs=80.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      +.+||.||+|.|.++..+.+.. +.+|++||+++.+++.|++.     .++++++++|+.++.                 
T Consensus        34 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~-----~~~~~~~~~d~~~~~-----------------   91 (259)
T 2p35_A           34 VLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR-----LPNTNFGKADLATWK-----------------   91 (259)
T ss_dssp             CSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH-----STTSEEEECCTTTCC-----------------
T ss_pred             CCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-----CCCcEEEECChhhcC-----------------
Confidence            5799999999999999888874 68999999999999999987     257899999976541                 


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                    ...+||+|++...    ...+   +   -...+++.+++.|+|||.+++.....
T Consensus        92 --------------~~~~fD~v~~~~~----l~~~---~---~~~~~l~~~~~~L~pgG~l~~~~~~~  135 (259)
T 2p35_A           92 --------------PAQKADLLYANAV----FQWV---P---DHLAVLSQLMDQLESGGVLAVQMPDN  135 (259)
T ss_dssp             --------------CSSCEEEEEEESC----GGGS---T---THHHHHHHHGGGEEEEEEEEEEEECC
T ss_pred             --------------ccCCcCEEEEeCc----hhhC---C---CHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence                          3467999998421    0001   1   23789999999999999999987544

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=98.70  E-value=1.7e-08  Score=99.55  Aligned_cols=108  Identities=19%  Similarity=0.258  Sum_probs=82.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCC---CCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLED---GEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~---d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      +.+||.||+|.|.++..|.+. +.+|++||+++.+++.|++.+....   ..+++++++|+.++                
T Consensus        83 ~~~vLDlGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~----------------  145 (299)
T 3g2m_A           83 SGPVLELAAGMGRLTFPFLDL-GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAF----------------  145 (299)
T ss_dssp             CSCEEEETCTTTTTHHHHHTT-TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBC----------------
T ss_pred             CCcEEEEeccCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcC----------------
Confidence            459999999999999888876 6799999999999999998875321   15799999998764                


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                     ....+||+|++....   . ..  .+.. ....+|+.+++.|+|||.|++.+..+
T Consensus       146 ---------------~~~~~fD~v~~~~~~---~-~~--~~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~  193 (299)
T 3g2m_A          146 ---------------ALDKRFGTVVISSGS---I-NE--LDEA-DRRGLYASVREHLEPGGKFLLSLAMS  193 (299)
T ss_dssp             ---------------CCSCCEEEEEECHHH---H-TT--SCHH-HHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             ---------------CcCCCcCEEEECCcc---c-cc--CCHH-HHHHHHHHHHHHcCCCcEEEEEeecC
Confidence                           135679999872110   0 00  0100 12789999999999999999988776

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=98.70  E-value=2.6e-08  Score=98.46  Aligned_cols=44  Identities=23%  Similarity=0.330  Sum_probs=39.6

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFG  306 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg  306 (478)
                      +.+||.||+|.|.++..|...+ +.+|++||+|+.+++.|++...
T Consensus        47 ~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~   91 (292)
T 3g07_A           47 GRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIR   91 (292)
T ss_dssp             TSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-
T ss_pred             CCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHH
Confidence            5799999999999999999886 6899999999999999998753

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=98.69  E-value=6.7e-08  Score=93.93  Aligned_cols=114  Identities=20%  Similarity=0.198  Sum_probs=88.1

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCC---CCCCeEEEEchHHHHHHHHHhhhcCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLE---DGEFLQVSVGDAIEFLEKLARQIVGKNPD  337 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~---~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~  337 (478)
                      ..+||.+|+|.|.++..+.+..  ..+|+++|+++.+++.|++.+...   ..++++++.+|+.+..             
T Consensus       100 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~-------------  166 (280)
T 1i9g_A          100 GARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE-------------  166 (280)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC-------------
T ss_pred             CCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC-------------
Confidence            4699999999999999988863  589999999999999999886321   1357999999987541             


Q ss_pred             CCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHH
Q 038592          338 SFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDML  417 (478)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v  417 (478)
                                       .....||+|++|+.+               ..++++.+.+.|+|||.+++...+.  +....+
T Consensus       167 -----------------~~~~~~D~v~~~~~~---------------~~~~l~~~~~~L~pgG~l~~~~~~~--~~~~~~  212 (280)
T 1i9g_A          167 -----------------LPDGSVDRAVLDMLA---------------PWEVLDAVSRLLVAGGVLMVYVATV--TQLSRI  212 (280)
T ss_dssp             -----------------CCTTCEEEEEEESSC---------------GGGGHHHHHHHEEEEEEEEEEESSH--HHHHHH
T ss_pred             -----------------CCCCceeEEEECCcC---------------HHHHHHHHHHhCCCCCEEEEEeCCH--HHHHHH
Confidence                             134579999996421               1368999999999999999887654  334556


Q ss_pred             HHHHHH
Q 038592          418 IQEFRD  423 (478)
Q Consensus       418 ~~~l~~  423 (478)
                      +..+++
T Consensus       213 ~~~l~~  218 (280)
T 1i9g_A          213 VEALRA  218 (280)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            666765

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.69  E-value=8.6e-08  Score=93.36  Aligned_cols=100  Identities=24%  Similarity=0.301  Sum_probs=79.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.||+|.|.++..+.+ .+.+|++||+++.+++.|++.+     ++++++++|+.++                   
T Consensus        58 ~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~-------------------  112 (279)
T 3ccf_A           58 GEFILDLGCGTGQLTEKIAQ-SGAEVLGTDNAATMIEKARQNY-----PHLHFDVADARNF-------------------  112 (279)
T ss_dssp             TCEEEEETCTTSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHC-----TTSCEEECCTTTC-------------------
T ss_pred             CCEEEEecCCCCHHHHHHHh-CCCeEEEEECCHHHHHHHHhhC-----CCCEEEECChhhC-------------------
Confidence            56999999999999998887 6789999999999999999886     5688999998653                   


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                  ....+||+|++.--    ...+   +   -...+++.+++.|+|||.+++.....
T Consensus       113 ------------~~~~~fD~v~~~~~----l~~~---~---d~~~~l~~~~~~LkpgG~l~~~~~~~  157 (279)
T 3ccf_A          113 ------------RVDKPLDAVFSNAM----LHWV---K---EPEAAIASIHQALKSGGRFVAEFGGK  157 (279)
T ss_dssp             ------------CCSSCEEEEEEESC----GGGC---S---CHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             ------------CcCCCcCEEEEcch----hhhC---c---CHHHHHHHHHHhcCCCcEEEEEecCC
Confidence                        12457999998421    0001   1   23689999999999999999877655

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=98.69  E-value=5.9e-08  Score=94.69  Aligned_cols=106  Identities=19%  Similarity=0.128  Sum_probs=81.1

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||+|.|.++..+.+..+.+|++||+++.+++.|++.+.-. ..++++++.+|..++                  
T Consensus        65 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~------------------  126 (287)
T 1kpg_A           65 GMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF------------------  126 (287)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC------------------
T ss_pred             cCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhC------------------
Confidence            5699999999999999888655779999999999999999876422 246899999998533                  


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                    + .+||+|+..-    ....+  ++.  .-..+++.+++.|+|||.+++.....
T Consensus       127 --------------~-~~fD~v~~~~----~l~~~--~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~  171 (287)
T 1kpg_A          127 --------------D-EPVDRIVSIG----AFEHF--GHE--RYDAFFSLAHRLLPADGVMLLHTITG  171 (287)
T ss_dssp             --------------C-CCCSEEEEES----CGGGT--CTT--THHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred             --------------C-CCeeEEEEeC----chhhc--ChH--HHHHHHHHHHHhcCCCCEEEEEEecC
Confidence                          3 6799999731    00001  111  23789999999999999999876543

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=98.69  E-value=2.8e-08  Score=91.77  Aligned_cols=111  Identities=20%  Similarity=0.167  Sum_probs=82.1

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.||+|.|.++..+.+....+|+++|+++.+++.|++.+.-  .++++++.+|+.++  .                
T Consensus        43 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~--~~~i~~~~~d~~~~--~----------------  102 (215)
T 2pxx_A           43 EDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH--VPQLRWETMDVRKL--D----------------  102 (215)
T ss_dssp             TCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT--CTTCEEEECCTTSC--C----------------
T ss_pred             CCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc--CCCcEEEEcchhcC--C----------------
Confidence            579999999999999888876434999999999999999998752  46899999998654  0                


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCC---CCC-----C-ChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAP---PVE-----F-VRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~P---p~~-----f-~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                  ..+..||+|+....-    ..+.|.   |..     . ....+++.+++.|+|||.+++...+.
T Consensus       103 ------------~~~~~fD~v~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  162 (215)
T 2pxx_A          103 ------------FPSASFDVVLEKGTL----DALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA  162 (215)
T ss_dssp             ------------SCSSCEEEEEEESHH----HHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             ------------CCCCcccEEEECcch----hhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence                        135679999974210    000000   000     0 12789999999999999999877765

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.68  E-value=2.7e-08  Score=92.96  Aligned_cols=106  Identities=28%  Similarity=0.343  Sum_probs=80.1

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      +.+||.||+|.|.++..+.+... +|++||+++.+++.|++.+... .++++++.+|..++-                  
T Consensus        39 ~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~------------------   98 (227)
T 1ve3_A           39 RGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSR-ESNVEFIVGDARKLS------------------   98 (227)
T ss_dssp             CCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHT-TCCCEEEECCTTSCC------------------
T ss_pred             CCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhc-CCCceEEECchhcCC------------------
Confidence            57999999999999988887644 9999999999999999887432 267999999976530                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIP  408 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~  408 (478)
                                  ....+||+|++.-.  -.   .. ...  -...+++.+++.|+|||.+++....
T Consensus        99 ------------~~~~~~D~v~~~~~--~~---~~-~~~--~~~~~l~~~~~~L~~gG~l~~~~~~  144 (227)
T 1ve3_A           99 ------------FEDKTFDYVIFIDS--IV---HF-EPL--ELNQVFKEVRRVLKPSGKFIMYFTD  144 (227)
T ss_dssp             ------------SCTTCEEEEEEESC--GG---GC-CHH--HHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ------------CCCCcEEEEEEcCc--hH---hC-CHH--HHHHHHHHHHHHcCCCcEEEEEecC
Confidence                        13568999998411  00   00 000  1267999999999999999987654

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=98.68  E-value=1.6e-07  Score=88.75  Aligned_cols=137  Identities=17%  Similarity=0.196  Sum_probs=88.7

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHH----HHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLR----VARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPD  337 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~----vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~  337 (478)
                      ..+||.||+|+|.++..+.+.. ..+|++||++|.+++    .|++.      +++.++++|+.+....  .        
T Consensus        58 g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~------~~v~~~~~d~~~~~~~--~--------  121 (210)
T 1nt2_A           58 DERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER------NNIIPLLFDASKPWKY--S--------  121 (210)
T ss_dssp             SCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC------SSEEEECSCTTCGGGT--T--------
T ss_pred             CCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC------CCeEEEEcCCCCchhh--c--------
Confidence            4699999999999999888876 479999999998654    44432      3688888887653100  0        


Q ss_pred             CCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCC-----C-C-
Q 038592          338 SFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIP-----P-N-  410 (478)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~-----~-~-  410 (478)
                                       ....+||+|++|+..          |.  ....+++.+++.|+|||.|++.+..     + + 
T Consensus       122 -----------------~~~~~fD~V~~~~~~----------~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~  172 (210)
T 1nt2_A          122 -----------------GIVEKVDLIYQDIAQ----------KN--QIEILKANAEFFLKEKGEVVIMVKARSIDSTAEP  172 (210)
T ss_dssp             -----------------TTCCCEEEEEECCCS----------TT--HHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCH
T ss_pred             -----------------ccccceeEEEEeccC----------hh--HHHHHHHHHHHHhCCCCEEEEEEecCCccccCCH
Confidence                             023679999997411          21  2345699999999999999987521     1 1 


Q ss_pred             chHHHHHHHHHHHhcCccEEEeecc--cceEEEEEE
Q 038592          411 RSFYDMLIQEFRDVFQELYEIDVGN--EENFVLIAT  444 (478)
Q Consensus       411 ~~~~~~v~~~l~~vF~~v~~~~v~~--~~N~Vl~a~  444 (478)
                      .+.....++.|++.|.-+-......  ..+.++++.
T Consensus       173 ~~~~~~~~~~l~~~f~~~~~~~~~p~~~~h~~~~~~  208 (210)
T 1nt2_A          173 EEVFKSVLKEMEGDFKIVKHGSLMPYHRDHIFIHAY  208 (210)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEEECTTTCTTEEEEEEE
T ss_pred             HHHHHHHHHHHHhhcEEeeeecCCCCCCCcEEEEEE
Confidence            2222233445666676555554422  245556654

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=98.68  E-value=8.4e-08  Score=90.65  Aligned_cols=103  Identities=21%  Similarity=0.289  Sum_probs=81.6

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.||+|.|.++..+.+. +.+|++||+++.+++.|++..   ..++++++.+|+.++-                  
T Consensus        54 ~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~------------------  111 (242)
T 3l8d_A           54 EAEVLDVGCGDGYGTYKLSRT-GYKAVGVDISEVMIQKGKERG---EGPDLSFIKGDLSSLP------------------  111 (242)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHTTT---CBTTEEEEECBTTBCS------------------
T ss_pred             CCeEEEEcCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhc---ccCCceEEEcchhcCC------------------
Confidence            569999999999999988887 779999999999999999875   3478999999987541                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                  ..+.+||+|++.-.       +...+   ....+++.+++.|+|||.+++....+
T Consensus       112 ------------~~~~~fD~v~~~~~-------l~~~~---~~~~~l~~~~~~L~pgG~l~i~~~~~  156 (242)
T 3l8d_A          112 ------------FENEQFEAIMAINS-------LEWTE---EPLRALNEIKRVLKSDGYACIAILGP  156 (242)
T ss_dssp             ------------SCTTCEEEEEEESC-------TTSSS---CHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             ------------CCCCCccEEEEcCh-------Hhhcc---CHHHHHHHHHHHhCCCeEEEEEEcCC
Confidence                        14678999998311       11011   23689999999999999999877544

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=98.68  E-value=5.6e-08  Score=97.79  Aligned_cols=117  Identities=18%  Similarity=0.199  Sum_probs=85.1

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCC-------C----CCCCeEEEEchHHHHHHHHHh
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGL-------E----DGEFLQVSVGDAIEFLEKLAR  329 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~-------~----~d~rl~v~v~Dg~~~l~~~~~  329 (478)
                      ..+||.+|+|.|.++..+.+..  ..+|++||++|.+++.|++.+..       .    ..++++++.+|+.+.+...  
T Consensus       106 g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~--  183 (336)
T 2b25_A          106 GDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDI--  183 (336)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-----
T ss_pred             CCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccccc--
Confidence            4699999999999999988864  38999999999999999987641       1    1358999999998754221  


Q ss_pred             hhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          330 QIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                                ....||+|++|..+         |      ..++..+++.|+|||.+++...+ 
T Consensus       184 --------------------------~~~~fD~V~~~~~~---------~------~~~l~~~~~~LkpgG~lv~~~~~-  221 (336)
T 2b25_A          184 --------------------------KSLTFDAVALDMLN---------P------HVTLPVFYPHLKHGGVCAVYVVN-  221 (336)
T ss_dssp             ------------------------------EEEEEECSSS---------T------TTTHHHHGGGEEEEEEEEEEESS-
T ss_pred             --------------------------CCCCeeEEEECCCC---------H------HHHHHHHHHhcCCCcEEEEEeCC-
Confidence                                      23469999996421         1      12789999999999999976653 


Q ss_pred             CchHHHHHHHHHHHh
Q 038592          410 NRSFYDMLIQEFRDV  424 (478)
Q Consensus       410 ~~~~~~~v~~~l~~v  424 (478)
                       ......+++.+++.
T Consensus       222 -~~~~~~~~~~l~~~  235 (336)
T 2b25_A          222 -ITQVIELLDGIRTC  235 (336)
T ss_dssp             -HHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHhc
Confidence             33344556666653

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=98.68  E-value=1.1e-07  Score=98.59  Aligned_cols=110  Identities=17%  Similarity=0.128  Sum_probs=79.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.+|+|+|.++..+... +.+|++||+++.+++.|++.+....-. .++.++|+.+++..                
T Consensus       215 g~~VLDlg~GtG~~sl~~a~~-ga~V~avDis~~al~~a~~n~~~ng~~-~~~~~~D~~~~l~~----------------  276 (393)
T 4dmg_A          215 GERVLDVYSYVGGFALRAARK-GAYALAVDKDLEALGVLDQAALRLGLR-VDIRHGEALPTLRG----------------  276 (393)
T ss_dssp             TCEEEEESCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCC-CEEEESCHHHHHHT----------------
T ss_pred             CCeEEEcccchhHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHhCCC-CcEEEccHHHHHHH----------------
Confidence            469999999999999888875 556999999999999999886322111 25779999999854                


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC-----ChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF-----VRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f-----~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                   ....||+|++|...-..      .....     .-.+++..+.+.|+|||.+++-..+.
T Consensus       277 -------------~~~~fD~Ii~dpP~f~~------~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~  329 (393)
T 4dmg_A          277 -------------LEGPFHHVLLDPPTLVK------RPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSY  329 (393)
T ss_dssp             -------------CCCCEEEEEECCCCCCS------SGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             -------------hcCCCCEEEECCCcCCC------CHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence                         12339999997421000      00111     11578899999999999998655544

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=98.68  E-value=4.4e-08  Score=97.24  Aligned_cols=106  Identities=16%  Similarity=0.091  Sum_probs=81.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||+|.|.++..+.+..+.+|++||+++.+++.|++.+.-. ..++++++.+|..++                  
T Consensus        91 ~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------------------  152 (318)
T 2fk8_A           91 GMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF------------------  152 (318)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC------------------
T ss_pred             cCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC------------------
Confidence            5699999999999998888776789999999999999999876422 236799999997543                  


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                    + .+||+|++.-    ....+  |+.  .-..+++.+++.|+|||.+++.....
T Consensus       153 --------------~-~~fD~v~~~~----~l~~~--~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~  197 (318)
T 2fk8_A          153 --------------A-EPVDRIVSIE----AFEHF--GHE--NYDDFFKRCFNIMPADGRMTVQSSVS  197 (318)
T ss_dssp             --------------C-CCCSEEEEES----CGGGT--CGG--GHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred             --------------C-CCcCEEEEeC----hHHhc--CHH--HHHHHHHHHHHhcCCCcEEEEEEecc
Confidence                          2 5799999841    00000  111  23789999999999999999877655

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=98.68  E-value=2.6e-08  Score=95.15  Aligned_cols=103  Identities=16%  Similarity=0.114  Sum_probs=79.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||+|.|.++..+.+..+.+|++||+++.+++.|++.+... ..++++++.+|+.+..                 
T Consensus        37 ~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------------   99 (256)
T 1nkv_A           37 GTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV-----------------   99 (256)
T ss_dssp             TCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC-----------------
T ss_pred             CCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCC-----------------
Confidence            5699999999999999998877889999999999999999876321 2357999999987541                 


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                    .+..||+|++-- .-..      .+   --..+|+.+++.|+|||.+++..
T Consensus       100 --------------~~~~fD~V~~~~-~~~~------~~---~~~~~l~~~~r~LkpgG~l~~~~  140 (256)
T 1nkv_A          100 --------------ANEKCDVAACVG-ATWI------AG---GFAGAEELLAQSLKPGGIMLIGE  140 (256)
T ss_dssp             --------------CSSCEEEEEEES-CGGG------TS---SSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             --------------cCCCCCEEEECC-ChHh------cC---CHHHHHHHHHHHcCCCeEEEEec
Confidence                          246799999821 1000      11   13789999999999999998853

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.68  E-value=7e-08  Score=102.06  Aligned_cols=133  Identities=16%  Similarity=0.120  Sum_probs=95.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.+|+|.|+.+..|.+..  ..+|+++|+++..++.+++.+....-.++.++.+|+.++...              
T Consensus       106 g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~--------------  171 (456)
T 3m4x_A          106 GEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPH--------------  171 (456)
T ss_dssp             TCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHH--------------
T ss_pred             CCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhh--------------
Confidence            4699999999999998888764  379999999999999998765211123699999999988643              


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCC-C--------CCC-----ChHHHHHHHHHccCcCcEEEEEe
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAP-P--------VEF-----VRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~P-p--------~~f-----~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                     ....||+|++|+..+..  |+..- |        ..+     ...++|..+.+.|+|||.+++.+
T Consensus       172 ---------------~~~~FD~Il~DaPCSg~--G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT  234 (456)
T 3m4x_A          172 ---------------FSGFFDRIVVDAPCSGE--GMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYST  234 (456)
T ss_dssp             ---------------HTTCEEEEEEECCCCCG--GGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ---------------ccccCCEEEECCCCCCc--cccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence                           24579999999854321  22100 1        110     23488999999999999999988


Q ss_pred             CCCCchHHHHHHHHHHHhcC
Q 038592          407 IPPNRSFYDMLIQEFRDVFQ  426 (478)
Q Consensus       407 ~~~~~~~~~~v~~~l~~vF~  426 (478)
                      .+..++--+.++..+.+-++
T Consensus       235 Cs~~~eEne~vv~~~l~~~~  254 (456)
T 3m4x_A          235 CTFAPEENEEIISWLVENYP  254 (456)
T ss_dssp             SCCCGGGTHHHHHHHHHHSS
T ss_pred             eecccccCHHHHHHHHHhCC
Confidence            77655545555666655554

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=98.67  E-value=7.6e-08  Score=91.95  Aligned_cols=102  Identities=24%  Similarity=0.220  Sum_probs=80.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.||+|.|.++..+.+. +.+|++||+++.+++.|++.+ ....++++++++|+.++-                  
T Consensus        40 ~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~------------------   99 (263)
T 2yqz_A           40 EPVFLELGVGTGRIALPLIAR-GYRYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAIP------------------   99 (263)
T ss_dssp             CCEEEEETCTTSTTHHHHHTT-TCEEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSCC------------------
T ss_pred             CCEEEEeCCcCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHh-hccCCceEEEEcccccCC------------------
Confidence            579999999999999888876 679999999999999999987 233578999999986431                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                  ..+.+||+|++...       +...+   -...+++.+++.|+|||.+++..
T Consensus       100 ------------~~~~~fD~v~~~~~-------l~~~~---~~~~~l~~~~~~L~pgG~l~~~~  141 (263)
T 2yqz_A          100 ------------LPDESVHGVIVVHL-------WHLVP---DWPKVLAEAIRVLKPGGALLEGW  141 (263)
T ss_dssp             ------------SCTTCEEEEEEESC-------GGGCT---THHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ------------CCCCCeeEEEECCc-------hhhcC---CHHHHHHHHHHHCCCCcEEEEEe
Confidence                        13567999998411       10011   23789999999999999998863

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=98.67  E-value=3.7e-08  Score=92.15  Aligned_cols=102  Identities=15%  Similarity=0.137  Sum_probs=77.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCC-----CCCeEEEEchHHHHHHHHHhhhcCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLED-----GEFLQVSVGDAIEFLEKLARQIVGKNP  336 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~-----d~rl~v~v~Dg~~~l~~~~~~~~~~~~  336 (478)
                      +.+||.||+|.|.++..+.+.. ..+|++||+++.+++.|++.+....     .++++++.+|.... .           
T Consensus        30 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-~-----------   97 (219)
T 3jwg_A           30 AKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYR-D-----------   97 (219)
T ss_dssp             CCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSC-C-----------
T ss_pred             CCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccc-c-----------
Confidence            5799999999999999998875 4799999999999999999875321     13899999997221 0           


Q ss_pred             CCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCCh---HHHHHHHHHccCcCcEEEEE
Q 038592          337 DSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVR---KDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~---~efl~~~~~~L~~~Gilv~N  405 (478)
                                        ....+||+|++.-    .       -.++..   ..+++.+++.|+|||+++..
T Consensus        98 ------------------~~~~~fD~V~~~~----~-------l~~~~~~~~~~~l~~~~~~LkpgG~~i~~  140 (219)
T 3jwg_A           98 ------------------KRFSGYDAATVIE----V-------IEHLDENRLQAFEKVLFEFTRPQTVIVST  140 (219)
T ss_dssp             ------------------GGGTTCSEEEEES----C-------GGGCCHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred             ------------------cccCCCCEEEEHH----H-------HHhCCHHHHHHHHHHHHHhhCCCEEEEEc
Confidence                              1346799999731    1       112222   48999999999999988764

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=98.67  E-value=4.2e-08  Score=95.06  Aligned_cols=104  Identities=19%  Similarity=0.185  Sum_probs=81.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||+|.|.++..+.+.. +.+|++||+++.+++.|++.+....-++++++.+|+.++.                 
T Consensus        38 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~-----------------  100 (276)
T 3mgg_A           38 GAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLP-----------------  100 (276)
T ss_dssp             TCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCC-----------------
T ss_pred             CCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCC-----------------
Confidence            5799999999999999998876 6899999999999999998874333357999999987641                 


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                   ....+||+|++...-.    .+   +   -...+++.+++.|+|||.+++..
T Consensus       101 -------------~~~~~fD~v~~~~~l~----~~---~---~~~~~l~~~~~~L~pgG~l~~~~  142 (276)
T 3mgg_A          101 -------------FEDSSFDHIFVCFVLE----HL---Q---SPEEALKSLKKVLKPGGTITVIE  142 (276)
T ss_dssp             -------------SCTTCEEEEEEESCGG----GC---S---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -------------CCCCCeeEEEEechhh----hc---C---CHHHHHHHHHHHcCCCcEEEEEE
Confidence                         1457899999842110    01   1   12689999999999999999854

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=98.67  E-value=2.7e-08  Score=97.71  Aligned_cols=119  Identities=11%  Similarity=0.016  Sum_probs=91.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.+|+|.|.++..+.+.. ..+|++||++|.+++.|++.+....-++++++.+|+.++ .                
T Consensus       120 ~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~----------------  182 (272)
T 3a27_A          120 NEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-E----------------  182 (272)
T ss_dssp             TCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-C----------------
T ss_pred             CCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-C----------------
Confidence            4699999999999999988875 579999999999999999876443334688999999876 2                


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCc---hHHHHHH
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNR---SFYDMLI  418 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~---~~~~~v~  418 (478)
                                    ...+||+|++|.            |.  -..+++..+.+.|+|||++++.......   +.....+
T Consensus       183 --------------~~~~~D~Vi~d~------------p~--~~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~  234 (272)
T 3a27_A          183 --------------LKDVADRVIMGY------------VH--KTHKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERL  234 (272)
T ss_dssp             --------------CTTCEEEEEECC------------CS--SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHH
T ss_pred             --------------ccCCceEEEECC------------cc--cHHHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHH
Confidence                          245799999973            22  2356899999999999999986655421   3345566


Q ss_pred             HHHHHhcC
Q 038592          419 QEFRDVFQ  426 (478)
Q Consensus       419 ~~l~~vF~  426 (478)
                      +.+.+.+.
T Consensus       235 ~~~~~~~~  242 (272)
T 3a27_A          235 KFYAEKNG  242 (272)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHhC
Confidence            67776653

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=98.66  E-value=3e-08  Score=93.93  Aligned_cols=106  Identities=23%  Similarity=0.297  Sum_probs=81.1

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      +.+||.||+|.|.++..|.+ .+.+|++||+++.+++.|++.+.-. ...+++++++|+.++.                 
T Consensus        67 ~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------------  128 (235)
T 3lcc_A           67 LGRALVPGCGGGHDVVAMAS-PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-----------------  128 (235)
T ss_dssp             CEEEEEETCTTCHHHHHHCB-TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-----------------
T ss_pred             CCCEEEeCCCCCHHHHHHHh-CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-----------------
Confidence            45999999999999988865 4679999999999999999987632 2357999999987641                 


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIP  408 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~  408 (478)
                                    ...+||+|+.-..    ...+  |+.  ....+++.+++.|+|||.+++....
T Consensus       129 --------------~~~~fD~v~~~~~----l~~~--~~~--~~~~~l~~~~~~LkpgG~l~~~~~~  173 (235)
T 3lcc_A          129 --------------PTELFDLIFDYVF----FCAI--EPE--MRPAWAKSMYELLKPDGELITLMYP  173 (235)
T ss_dssp             --------------CSSCEEEEEEESS----TTTS--CGG--GHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             --------------CCCCeeEEEEChh----hhcC--CHH--HHHHHHHHHHHHCCCCcEEEEEEec
Confidence                          3458999997311    0001  111  3478999999999999999986554

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=98.66  E-value=4e-08  Score=100.78  Aligned_cols=106  Identities=11%  Similarity=0.004  Sum_probs=78.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      +.+||.+| |+|.++..+.... ..+|++||+||.+++.|++++....-.+++++.+|+.+++..               
T Consensus       173 ~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~---------------  236 (373)
T 2qm3_A          173 NKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPD---------------  236 (373)
T ss_dssp             TCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCT---------------
T ss_pred             CCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchh---------------
Confidence            57999999 9999998888764 479999999999999999886311112799999999874311               


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCc-EEEEEeCC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFG-IFVMNVIP  408 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~G-ilv~N~~~  408 (478)
                                   ....+||+|++|..-.         +..  ...|++.+.+.|+||| ++++-+..
T Consensus       237 -------------~~~~~fD~Vi~~~p~~---------~~~--~~~~l~~~~~~LkpgG~~~~~~~~~  280 (373)
T 2qm3_A          237 -------------YALHKFDTFITDPPET---------LEA--IRAFVGRGIATLKGPRCAGYFGITR  280 (373)
T ss_dssp             -------------TTSSCBSEEEECCCSS---------HHH--HHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred             -------------hccCCccEEEECCCCc---------hHH--HHHHHHHHHHHcccCCeEEEEEEec
Confidence                         0235799999963100         111  3789999999999999 54655554

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=98.66  E-value=1.9e-08  Score=94.76  Aligned_cols=104  Identities=16%  Similarity=0.216  Sum_probs=79.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCC------CEEEEEECChHHHHHHHHhcCCCC-----CCCeEEEEchHHHHHHHHHhhh
Q 038592          263 RPKALCVGVGGGALVSFLRTQLD------FEVVGVEMDEVVLRVARQYFGLED-----GEFLQVSVGDAIEFLEKLARQI  331 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~------~~V~~VEiDp~Vl~vA~~~Fg~~~-----d~rl~v~v~Dg~~~l~~~~~~~  331 (478)
                      ..+||.||+|.|.++..+.+..+      .+|++||+++.+++.|++.+....     .++++++.+|+.+...+...  
T Consensus        81 ~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~--  158 (227)
T 2pbf_A           81 GSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKK--  158 (227)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHH--
T ss_pred             CCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCc--
Confidence            46999999999999988888753      699999999999999998864221     35799999999874311000  


Q ss_pred             cCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCC
Q 038592          332 VGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIP  408 (478)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~  408 (478)
                                              ...+||+|+++...           .+     +++.+.+.|+|||.+++.+..
T Consensus       159 ------------------------~~~~fD~I~~~~~~-----------~~-----~~~~~~~~LkpgG~lv~~~~~  195 (227)
T 2pbf_A          159 ------------------------ELGLFDAIHVGASA-----------SE-----LPEILVDLLAENGKLIIPIEE  195 (227)
T ss_dssp             ------------------------HHCCEEEEEECSBB-----------SS-----CCHHHHHHEEEEEEEEEEEEE
T ss_pred             ------------------------cCCCcCEEEECCch-----------HH-----HHHHHHHhcCCCcEEEEEEcc
Confidence                                    13469999995311           12     347889999999999998865

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=98.65  E-value=5.4e-08  Score=95.04  Aligned_cols=103  Identities=13%  Similarity=0.077  Sum_probs=79.1

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      +.+||.+|+|.|.++..|.+. +.+|++||+++.+++.|++.+..... +++++.+|+.++.                  
T Consensus       121 ~~~vLD~GcG~G~~~~~l~~~-g~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~------------------  180 (286)
T 3m70_A          121 PCKVLDLGCGQGRNSLYLSLL-GYDVTSWDHNENSIAFLNETKEKENL-NISTALYDINAAN------------------  180 (286)
T ss_dssp             SCEEEEESCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCGGGCC------------------
T ss_pred             CCcEEEECCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHcCC-ceEEEEecccccc------------------
Confidence            579999999999999998877 67999999999999999987643222 7999999987641                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                   ...+||+|++...    ..  ..++.  ....+++.+++.|+|||.+++..
T Consensus       181 -------------~~~~fD~i~~~~~----~~--~~~~~--~~~~~l~~~~~~LkpgG~l~i~~  223 (286)
T 3m70_A          181 -------------IQENYDFIVSTVV----FM--FLNRE--RVPSIIKNMKEHTNVGGYNLIVA  223 (286)
T ss_dssp             -------------CCSCEEEEEECSS----GG--GSCGG--GHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             -------------ccCCccEEEEccc----hh--hCCHH--HHHHHHHHHHHhcCCCcEEEEEE
Confidence                         2567999999421    00  00111  23589999999999999977643

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=98.64  E-value=4.6e-08  Score=95.59  Aligned_cols=114  Identities=17%  Similarity=0.181  Sum_probs=87.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      ..+||.+|+|.|.++..+.+..  ..+|+++|+++.+++.|++.+... ..++++++.+|..+++               
T Consensus       113 ~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------------  177 (277)
T 1o54_A          113 GDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGF---------------  177 (277)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCC---------------
T ss_pred             CCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcc---------------
Confidence            4699999999999999988874  579999999999999999886321 1357999999987652               


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHH
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQ  419 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~  419 (478)
                                      ....||+|++|...               ...+++.+.+.|+|||.+++...+.  .....+.+
T Consensus       178 ----------------~~~~~D~V~~~~~~---------------~~~~l~~~~~~L~pgG~l~~~~~~~--~~~~~~~~  224 (277)
T 1o54_A          178 ----------------DEKDVDALFLDVPD---------------PWNYIDKCWEALKGGGRFATVCPTT--NQVQETLK  224 (277)
T ss_dssp             ----------------SCCSEEEEEECCSC---------------GGGTHHHHHHHEEEEEEEEEEESSH--HHHHHHHH
T ss_pred             ----------------cCCccCEEEECCcC---------------HHHHHHHHHHHcCCCCEEEEEeCCH--HHHHHHHH
Confidence                            34579999996311               1468999999999999999877543  22345566


Q ss_pred             HHHHh
Q 038592          420 EFRDV  424 (478)
Q Consensus       420 ~l~~v  424 (478)
                      .|++.
T Consensus       225 ~l~~~  229 (277)
T 1o54_A          225 KLQEL  229 (277)
T ss_dssp             HHHHS
T ss_pred             HHHHC
Confidence            66653

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=98.64  E-value=7e-08  Score=90.35  Aligned_cols=109  Identities=17%  Similarity=0.227  Sum_probs=81.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCC-----CCCeEEEEchHHHHHHHHHhhhcCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLED-----GEFLQVSVGDAIEFLEKLARQIVGKNPD  337 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~-----d~rl~v~v~Dg~~~l~~~~~~~~~~~~~  337 (478)
                      ..+||.||+|.|.++..+... +.+|++||+++.+++.|++.+....     ..+++++.+|+.++-             
T Consensus        31 ~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------------   96 (235)
T 3sm3_A           31 DDEILDIGCGSGKISLELASK-GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLS-------------   96 (235)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCC-------------
T ss_pred             CCeEEEECCCCCHHHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccC-------------
Confidence            579999999999999988877 7799999999999999999875321     246899999976431             


Q ss_pred             CCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          338 SFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                       ....+||+|++...       +...+..-....+++.+++.|+|||.+++....+
T Consensus        97 -----------------~~~~~~D~v~~~~~-------l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  144 (235)
T 3sm3_A           97 -----------------FHDSSFDFAVMQAF-------LTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQ  144 (235)
T ss_dssp             -----------------SCTTCEEEEEEESC-------GGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred             -----------------CCCCceeEEEEcch-------hhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCc
Confidence                             14578999998421       1101111012279999999999999999876544

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=98.64  E-value=4e-08  Score=92.80  Aligned_cols=107  Identities=23%  Similarity=0.293  Sum_probs=80.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.||+|.|.++..+.+.  .+|++||+++.+++.|++.+... ..+++++.+|..++-                  
T Consensus        34 ~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~------------------   92 (243)
T 3d2l_A           34 GKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMET-NRHVDFWVQDMRELE------------------   92 (243)
T ss_dssp             TCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHT-TCCCEEEECCGGGCC------------------
T ss_pred             CCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhc-CCceEEEEcChhhcC------------------
Confidence            469999999999999888876  89999999999999999876422 257899999976541                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                   ...+||+|++..+.-..   +  ++. -....+++.+++.|+|||.+++.+.++
T Consensus        93 -------------~~~~fD~v~~~~~~~~~---~--~~~-~~~~~~l~~~~~~L~pgG~l~~~~~~~  140 (243)
T 3d2l_A           93 -------------LPEPVDAITILCDSLNY---L--QTE-ADVKQTFDSAARLLTDGGKLLFDVHSP  140 (243)
T ss_dssp             -------------CSSCEEEEEECTTGGGG---C--CSH-HHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             -------------CCCCcCEEEEeCCchhh---c--CCH-HHHHHHHHHHHHhcCCCeEEEEEcCCH
Confidence                         23679999984211100   0  000 023678999999999999999877654

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=98.64  E-value=1.3e-07  Score=90.13  Aligned_cols=102  Identities=19%  Similarity=0.276  Sum_probs=77.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.||+|.|.++..+.+.. .+|++||+++.+++.|++.+....-++++++.+|+.++-                  
T Consensus        22 ~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------------------   82 (239)
T 1xxl_A           22 EHRVLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP------------------   82 (239)
T ss_dssp             TCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCC------------------
T ss_pred             CCEEEEEccCcCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCC------------------
Confidence            5799999999999998888764 599999999999999998763222247999999975430                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                  ..+..||+|++..--    ..+   +   --..+++.+++.|+|||.+++.
T Consensus        83 ------------~~~~~fD~v~~~~~l----~~~---~---~~~~~l~~~~~~LkpgG~l~~~  123 (239)
T 1xxl_A           83 ------------FPDDSFDIITCRYAA----HHF---S---DVRKAVREVARVLKQDGRFLLV  123 (239)
T ss_dssp             ------------SCTTCEEEEEEESCG----GGC---S---CHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ------------CCCCcEEEEEECCch----hhc---c---CHHHHHHHHHHHcCCCcEEEEE
Confidence                        145689999985210    001   1   1378999999999999999874

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=98.63  E-value=1.8e-07  Score=99.50  Aligned_cols=133  Identities=14%  Similarity=0.188  Sum_probs=92.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.+|+|.|+.+..|.+..  ..+|+++|+++..++.+++.+....-++++++.+|+.++...              
T Consensus       118 g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~--------------  183 (479)
T 2frx_A          118 PQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAA--------------  183 (479)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHH--------------
T ss_pred             CCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhh--------------
Confidence            4699999999999999998876  379999999999999999775211123699999999887432              


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCC-CCCCCCC-------------ChHHHHHHHHHccCcCcEEEEEe
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGT-SAPPVEF-------------VRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~-s~Pp~~f-------------~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                     ....||+|++|+..+..  |+ .--|...             +..++|..+.+.|+|||.+++-.
T Consensus       184 ---------------~~~~fD~Il~D~PcSg~--G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysT  246 (479)
T 2frx_A          184 ---------------VPEMFDAILLDAPCSGE--GVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYST  246 (479)
T ss_dssp             ---------------STTCEEEEEEECCCCCG--GGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ---------------ccccCCEEEECCCcCCc--ccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEec
Confidence                           24579999999854321  21 1112211             13578999999999999999876


Q ss_pred             CCCCchHHHHHHHHHHHhcC
Q 038592          407 IPPNRSFYDMLIQEFRDVFQ  426 (478)
Q Consensus       407 ~~~~~~~~~~v~~~l~~vF~  426 (478)
                      .+...+--..++..+.+-++
T Consensus       247 cs~~~~Ene~vv~~~l~~~~  266 (479)
T 2frx_A          247 CTLNQEENEAVCLWLKETYP  266 (479)
T ss_dssp             SCCSSTTTHHHHHHHHHHST
T ss_pred             ccCCcccCHHHHHHHHHHCC
Confidence            65433222334444444343

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=98.63  E-value=8.8e-08  Score=91.18  Aligned_cols=104  Identities=15%  Similarity=0.081  Sum_probs=79.6

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      +.+||.||+|.|.++..|.+....+|++||+++.+++.|++.+...  ++++++.+|..++-                  
T Consensus        94 ~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~------------------  153 (254)
T 1xtp_A           94 TSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETAT------------------  153 (254)
T ss_dssp             CSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGGCC------------------
T ss_pred             CCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC--CceEEEEccHHHCC------------------
Confidence            5799999999999998887765568999999999999999987532  67999999986531                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                  ....+||+|++.-    .   +...+.. .-..+++.+++.|+|||.+++-.
T Consensus       154 ------------~~~~~fD~v~~~~----~---l~~~~~~-~~~~~l~~~~~~LkpgG~l~i~~  197 (254)
T 1xtp_A          154 ------------LPPNTYDLIVIQW----T---AIYLTDA-DFVKFFKHCQQALTPNGYIFFKE  197 (254)
T ss_dssp             ------------CCSSCEEEEEEES----C---GGGSCHH-HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ------------CCCCCeEEEEEcc----h---hhhCCHH-HHHHHHHHHHHhcCCCeEEEEEe
Confidence                        1356899999831    1   1000100 13689999999999999998854

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=98.63  E-value=9.2e-08  Score=93.76  Aligned_cols=104  Identities=20%  Similarity=0.164  Sum_probs=81.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      +.+||.||+|.|.++..+.+.+  +.+|++||++|.+++.|++.+... ..+++++++|+.++-                
T Consensus        23 ~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~~v~~~~~d~~~~~----------------   85 (284)
T 3gu3_A           23 PVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL-PYDSEFLEGDATEIE----------------   85 (284)
T ss_dssp             CCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSS-SSEEEEEESCTTTCC----------------
T ss_pred             CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhc-CCceEEEEcchhhcC----------------
Confidence            6799999999999999998875  379999999999999999987532 238999999987641                


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCC
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIP  408 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~  408 (478)
                                     ...+||+|++...       +...+   -...+++.+++.|+|||.+++....
T Consensus        86 ---------------~~~~fD~v~~~~~-------l~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A           86 ---------------LNDKYDIAICHAF-------LLHMT---TPETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             ---------------CSSCEEEEEEESC-------GGGCS---SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             ---------------cCCCeeEEEECCh-------hhcCC---CHHHHHHHHHHHcCCCCEEEEEecc
Confidence                           2457999999531       11111   2278999999999999999976554

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.63  E-value=4.9e-08  Score=93.13  Aligned_cols=106  Identities=22%  Similarity=0.275  Sum_probs=79.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      +.+||.+|+|.|.++..|.+. +.+|++||+++.+++.|++.+... +.+++++.+|..++-                  
T Consensus        42 ~~~vLDlGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~------------------  101 (252)
T 1wzn_A           42 VRRVLDLACGTGIPTLELAER-GYEVVGLDLHEEMLRVARRKAKER-NLKIEFLQGDVLEIA------------------  101 (252)
T ss_dssp             CCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHT-TCCCEEEESCGGGCC------------------
T ss_pred             CCEEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHhc-CCceEEEECChhhcc------------------
Confidence            579999999999999888876 679999999999999999876421 236899999987641                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIP  408 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~  408 (478)
                                   ...+||+|++..... .   .. ++.  ....+++.+++.|+|||.+++.+.+
T Consensus       102 -------------~~~~fD~v~~~~~~~-~---~~-~~~--~~~~~l~~~~~~L~pgG~li~~~~~  147 (252)
T 1wzn_A          102 -------------FKNEFDAVTMFFSTI-M---YF-DEE--DLRKLFSKVAEALKPGGVFITDFPC  147 (252)
T ss_dssp             -------------CCSCEEEEEECSSGG-G---GS-CHH--HHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             -------------cCCCccEEEEcCCch-h---cC-CHH--HHHHHHHHHHHHcCCCeEEEEeccc
Confidence                         235799999732110 0   00 000  2367999999999999999987754

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=98.63  E-value=8.9e-08  Score=92.45  Aligned_cols=105  Identities=21%  Similarity=0.195  Sum_probs=81.1

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||+|.|.++..+.+..+.+|++||+++.+++.|++.+... ..++++++.+|+.+.-                 
T Consensus        62 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------------  124 (273)
T 3bus_A           62 GDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLP-----------------  124 (273)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC-----------------
T ss_pred             CCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCC-----------------
Confidence            5799999999999999998877889999999999999999876321 2457999999986530                 


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVI  407 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~  407 (478)
                                   ..+.+||+|+.--    ....+  +    -...+++.+++.|+|||.+++...
T Consensus       125 -------------~~~~~fD~v~~~~----~l~~~--~----~~~~~l~~~~~~L~pgG~l~i~~~  167 (273)
T 3bus_A          125 -------------FEDASFDAVWALE----SLHHM--P----DRGRALREMARVLRPGGTVAIADF  167 (273)
T ss_dssp             -------------SCTTCEEEEEEES----CTTTS--S----CHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             -------------CCCCCccEEEEec----hhhhC--C----CHHHHHHHHHHHcCCCeEEEEEEe
Confidence                         1356899999731    11011  1    137899999999999999987553

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.62  E-value=1.8e-07  Score=103.89  Aligned_cols=114  Identities=15%  Similarity=0.164  Sum_probs=84.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCC--CCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLED--GEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~--d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.+|+|+|+++..+...-..+|++||+++.+++.|++.+....  +++++++.+|+.+++..              
T Consensus       540 g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~--------------  605 (703)
T 3v97_A          540 GKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLRE--------------  605 (703)
T ss_dssp             TCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHH--------------
T ss_pred             CCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHh--------------
Confidence            46999999999999988776434589999999999999999874332  25899999999999865              


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCC-C----ChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVE-F----VRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~-f----~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                     ...+||+|++|...-....    .... +    .-.+++..+.++|+|||+|++-..++
T Consensus       606 ---------------~~~~fD~Ii~DPP~f~~~~----~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~  660 (703)
T 3v97_A          606 ---------------ANEQFDLIFIDPPTFSNSK----RMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKR  660 (703)
T ss_dssp             ---------------CCCCEEEEEECCCSBC-----------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred             ---------------cCCCccEEEECCccccCCc----cchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCc
Confidence                           3568999999853211000    0000 1    12567889999999999999766553

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.62  E-value=1.8e-07  Score=88.88  Aligned_cols=108  Identities=14%  Similarity=0.149  Sum_probs=79.6

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.||+|.|.++..|.+... +|++||+++.+++.|++.+.   ..+++++++|..++-....-.            
T Consensus        57 ~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~~------------  120 (245)
T 3ggd_A           57 ELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENT---AANISYRLLDGLVPEQAAQIH------------  120 (245)
T ss_dssp             TSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSC---CTTEEEEECCTTCHHHHHHHH------------
T ss_pred             CCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCc---ccCceEEECcccccccccccc------------
Confidence            46899999999999999988754 99999999999999999874   358999999998753221000            


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVI  407 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~  407 (478)
                                   ....||+|+....-..    +  ++.  ....+++.+++.|+|||.+++.-.
T Consensus       121 -------------~~~~~d~v~~~~~~~~----~--~~~--~~~~~l~~~~~~LkpgG~l~i~~~  164 (245)
T 3ggd_A          121 -------------SEIGDANIYMRTGFHH----I--PVE--KRELLGQSLRILLGKQGAMYLIEL  164 (245)
T ss_dssp             -------------HHHCSCEEEEESSSTT----S--CGG--GHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred             -------------cccCccEEEEcchhhc----C--CHH--HHHHHHHHHHHHcCCCCEEEEEeC
Confidence                         1234999998532110    0  111  237899999999999998665443

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=98.62  E-value=6.9e-08  Score=99.71  Aligned_cols=103  Identities=21%  Similarity=0.196  Sum_probs=78.1

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      .+.||.||+|+|.|++++++.-..+|++||.++ +++.|++..... ..++++++.+|..++                  
T Consensus        84 ~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~------------------  144 (376)
T 4hc4_A           84 GKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETV------------------  144 (376)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTC------------------
T ss_pred             CCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeee------------------
Confidence            468999999999999998876557999999997 788888765321 257899999998664                  


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                   ....++|+|+......-       ...+-.-+.++....+.|+|||+++-
T Consensus       145 -------------~lpe~~DvivsE~~~~~-------l~~e~~l~~~l~a~~r~Lkp~G~~iP  187 (376)
T 4hc4_A          145 -------------ELPEQVDAIVSEWMGYG-------LLHESMLSSVLHARTKWLKEGGLLLP  187 (376)
T ss_dssp             -------------CCSSCEEEEECCCCBTT-------BTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred             -------------cCCccccEEEeeccccc-------ccccchhhhHHHHHHhhCCCCceECC
Confidence                         13468999998654321       11222347888999999999999873

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.60  E-value=2e-07  Score=87.92  Aligned_cols=102  Identities=19%  Similarity=0.140  Sum_probs=79.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.||+|.|.++..+.+....+|++||+++.+++.|++.+..   .+++++.+|..++-                  
T Consensus        44 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~------------------  102 (243)
T 3bkw_A           44 GLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD---TGITYERADLDKLH------------------  102 (243)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS---SSEEEEECCGGGCC------------------
T ss_pred             CCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc---CCceEEEcChhhcc------------------
Confidence            579999999999999888876323999999999999999998753   47999999987641                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVI  407 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~  407 (478)
                                  ....+||+|++..    ....+   +   ....+++.+++.|+|||.+++...
T Consensus       103 ------------~~~~~fD~v~~~~----~l~~~---~---~~~~~l~~~~~~L~pgG~l~~~~~  145 (243)
T 3bkw_A          103 ------------LPQDSFDLAYSSL----ALHYV---E---DVARLFRTVHQALSPGGHFVFSTE  145 (243)
T ss_dssp             ------------CCTTCEEEEEEES----CGGGC---S---CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ------------CCCCCceEEEEec----ccccc---c---hHHHHHHHHHHhcCcCcEEEEEeC
Confidence                        1356899999842    11011   1   237899999999999999998664

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=98.60  E-value=8.3e-08  Score=93.74  Aligned_cols=114  Identities=14%  Similarity=0.124  Sum_probs=82.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcC---C-CCCCCeEEEEchHHHHHHHHHhhhcCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFG---L-EDGEFLQVSVGDAIEFLEKLARQIVGKNPDS  338 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg---~-~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~  338 (478)
                      +.+||.||+|.|.++..|.+. +.+|++||+++.+++.|++...   . ....++.+..+|..++-...           
T Consensus        58 ~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-----------  125 (293)
T 3thr_A           58 CHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDV-----------  125 (293)
T ss_dssp             CCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHS-----------
T ss_pred             CCEEEEecCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcccc-----------
Confidence            579999999999999988876 5699999999999999987641   1 12257889999988764331           


Q ss_pred             CCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCC---CCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          339 FGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPV---EFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~---~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                      ....+||+|++--.   ....+  +..   .=.-..+|+.+++.|+|||.+++.....
T Consensus       126 ----------------~~~~~fD~V~~~g~---~l~~~--~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  178 (293)
T 3thr_A          126 ----------------PAGDGFDAVICLGN---SFAHL--PDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNY  178 (293)
T ss_dssp             ----------------CCTTCEEEEEECTT---CGGGS--CCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             ----------------ccCCCeEEEEEcCh---HHhhc--CccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCH
Confidence                            14568999998211   00011  110   0014789999999999999999877543

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=98.60  E-value=7.2e-08  Score=95.80  Aligned_cols=104  Identities=12%  Similarity=0.057  Sum_probs=81.6

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||+|.|.++..+.+.++.+|++||+++.+++.|++.+... ..++++++.+|+.+.-                 
T Consensus       118 ~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------------  180 (312)
T 3vc1_A          118 DDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTP-----------------  180 (312)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC-----------------
T ss_pred             CCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCC-----------------
Confidence            5799999999999999988876789999999999999999875422 2358999999986430                 


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVI  407 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~  407 (478)
                                   ..+.+||+|+..-    .   +    ..+--..+|+.+++.|+|||.+++...
T Consensus       181 -------------~~~~~fD~V~~~~----~---l----~~~~~~~~l~~~~~~LkpgG~l~~~~~  222 (312)
T 3vc1_A          181 -------------FDKGAVTASWNNE----S---T----MYVDLHDLFSEHSRFLKVGGRYVTITG  222 (312)
T ss_dssp             -------------CCTTCEEEEEEES----C---G----GGSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -------------CCCCCEeEEEECC----c---h----hhCCHHHHHHHHHHHcCCCcEEEEEEc
Confidence                         1457899999831    1   1    111258899999999999999997554

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.60  E-value=1.8e-07  Score=86.80  Aligned_cols=101  Identities=26%  Similarity=0.238  Sum_probs=78.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||+|.|.++..+    +. ++++||+++.+++.|++.+     ++++++.+|+.++-                 
T Consensus        37 ~~~vLdiG~G~G~~~~~l----~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~-----------------   90 (211)
T 2gs9_A           37 GESLLEVGAGTGYWLRRL----PYPQKVGVEPSEAMLAVGRRRA-----PEATWVRAWGEALP-----------------   90 (211)
T ss_dssp             CSEEEEETCTTCHHHHHC----CCSEEEEECCCHHHHHHHHHHC-----TTSEEECCCTTSCC-----------------
T ss_pred             CCeEEEECCCCCHhHHhC----CCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcccccCC-----------------
Confidence            579999999999988766    56 9999999999999999987     56888988875430                 


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCch
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRS  412 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~  412 (478)
                                   ..+.+||+|++.-.    ...+   +   ....+++.+++.|+|||.+++....+...
T Consensus        91 -------------~~~~~fD~v~~~~~----l~~~---~---~~~~~l~~~~~~L~pgG~l~i~~~~~~~~  138 (211)
T 2gs9_A           91 -------------FPGESFDVVLLFTT----LEFV---E---DVERVLLEARRVLRPGGALVVGVLEALSP  138 (211)
T ss_dssp             -------------SCSSCEEEEEEESC----TTTC---S---CHHHHHHHHHHHEEEEEEEEEEEECTTSH
T ss_pred             -------------CCCCcEEEEEEcCh----hhhc---C---CHHHHHHHHHHHcCCCCEEEEEecCCcCc
Confidence                         14568999998421    1011   1   23789999999999999999988776543

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=98.59  E-value=2.7e-08  Score=94.19  Aligned_cols=90  Identities=18%  Similarity=0.200  Sum_probs=74.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.||+|.|.++..+.+. +.+|++||+++.+++.|++.     .++++++++|+.+.+.                 
T Consensus        49 ~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~-----------------  105 (226)
T 3m33_A           49 QTRVLEAGCGHGPDAARFGPQ-AARWAAYDFSPELLKLARAN-----APHADVYEWNGKGELP-----------------  105 (226)
T ss_dssp             TCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHH-----CTTSEEEECCSCSSCC-----------------
T ss_pred             CCeEEEeCCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHh-----CCCceEEEcchhhccC-----------------
Confidence            579999999999999998887 67999999999999999988     3478999999864321                 


Q ss_pred             cccCCCccCCCCCC-CCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEE
Q 038592          343 SLKDGNFLDNSDRV-DNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFV  403 (478)
Q Consensus       343 ~~~~~~~~~~~~~~-~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv  403 (478)
                                  .. +.+||+|+...   +        +     ..+++.+++.|+|||.++
T Consensus       106 ------------~~~~~~fD~v~~~~---~--------~-----~~~l~~~~~~LkpgG~l~  139 (226)
T 3m33_A          106 ------------AGLGAPFGLIVSRR---G--------P-----TSVILRLPELAAPDAHFL  139 (226)
T ss_dssp             ------------TTCCCCEEEEEEES---C--------C-----SGGGGGHHHHEEEEEEEE
T ss_pred             ------------CcCCCCEEEEEeCC---C--------H-----HHHHHHHHHHcCCCcEEE
Confidence                        13 56899999851   1        1     347788999999999998

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.59  E-value=6.2e-08  Score=89.30  Aligned_cols=103  Identities=23%  Similarity=0.347  Sum_probs=78.9

Q ss_pred             eEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccc
Q 038592          265 KALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSL  344 (478)
Q Consensus       265 ~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~  344 (478)
                      +||.||+|.|.++..+.+. +.+|++||+++.+++.|++.+... ..+++++.+|..++-                    
T Consensus        32 ~vLdiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~--------------------   89 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLASL-GYEVTAVDQSSVGLAKAKQLAQEK-GVKITTVQSNLADFD--------------------   89 (202)
T ss_dssp             EEEECCCSCTHHHHHHHTT-TCEEEEECSSHHHHHHHHHHHHHH-TCCEEEECCBTTTBS--------------------
T ss_pred             CEEEECCCCCHhHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhc-CCceEEEEcChhhcC--------------------
Confidence            9999999999999888876 679999999999999999876321 126899999976541                    


Q ss_pred             cCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          345 KDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       345 ~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                ....+||+|++....      +  ++.  ....+++.+++.|+|||.+++.....
T Consensus        90 ----------~~~~~fD~v~~~~~~------~--~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~  134 (202)
T 2kw5_A           90 ----------IVADAWEGIVSIFCH------L--PSS--LRQQLYPKVYQGLKPGGVFILEGFAP  134 (202)
T ss_dssp             ----------CCTTTCSEEEEECCC------C--CHH--HHHHHHHHHHTTCCSSEEEEEEEECT
T ss_pred             ----------CCcCCccEEEEEhhc------C--CHH--HHHHHHHHHHHhcCCCcEEEEEEecc
Confidence                      135689999983210      0  111  23789999999999999999876543

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=98.59  E-value=1.2e-07  Score=96.50  Aligned_cols=105  Identities=21%  Similarity=0.170  Sum_probs=79.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||+|.|.++.++.+....+|++||+++ +++.|++..... ..++++++.+|..++-                 
T Consensus        67 ~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------------  128 (349)
T 3q7e_A           67 DKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVE-----------------  128 (349)
T ss_dssp             TCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCC-----------------
T ss_pred             CCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHcc-----------------
Confidence            579999999999999999987556999999995 999999876422 2457999999987651                 


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                   .+..+||+|+.+.....    +   ...-.-..++..+.+.|+|||+++.+
T Consensus       129 -------------~~~~~fD~Iis~~~~~~----l---~~~~~~~~~l~~~~r~LkpgG~li~~  172 (349)
T 3q7e_A          129 -------------LPVEKVDIIISEWMGYC----L---FYESMLNTVLHARDKWLAPDGLIFPD  172 (349)
T ss_dssp             -------------CSSSCEEEEEECCCBBT----B---TBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred             -------------CCCCceEEEEEcccccc----c---cCchhHHHHHHHHHHhCCCCCEEccc
Confidence                         14578999999642110    0   01113467999999999999999743

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=98.58  E-value=1.1e-07  Score=97.73  Aligned_cols=103  Identities=21%  Similarity=0.165  Sum_probs=78.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||+|.|.++.++.+....+|++||++ .+++.|++.+... ..++++++.+|+.++.                 
T Consensus        64 ~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------------  125 (376)
T 3r0q_C           64 GKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDIS-----------------  125 (376)
T ss_dssp             TCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCC-----------------
T ss_pred             CCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcC-----------------
Confidence            57999999999999999998744599999999 9999999876422 2467999999997651                 


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                    ...+||+|+.+.....       ....-.-..++..+++.|+|||++++
T Consensus       126 --------------~~~~~D~Iv~~~~~~~-------l~~e~~~~~~l~~~~~~LkpgG~li~  167 (376)
T 3r0q_C          126 --------------LPEKVDVIISEWMGYF-------LLRESMFDSVISARDRWLKPTGVMYP  167 (376)
T ss_dssp             --------------CSSCEEEEEECCCBTT-------BTTTCTHHHHHHHHHHHEEEEEEEES
T ss_pred             --------------cCCcceEEEEcChhhc-------ccchHHHHHHHHHHHhhCCCCeEEEE
Confidence                          2368999999642110       11111246799999999999999975

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=98.58  E-value=5.9e-08  Score=90.49  Aligned_cols=102  Identities=21%  Similarity=0.066  Sum_probs=77.1

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCC--CEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQLD--FEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~--~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.||+|.|.++..+.+..+  .+|++||+++.+++.|++.+....-++++++.+|+.+.+.               
T Consensus        78 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---------------  142 (215)
T 2yxe_A           78 GMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYE---------------  142 (215)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCG---------------
T ss_pred             CCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC---------------
Confidence            56999999999999988888753  7999999999999999987632122459999999853321               


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCC
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPN  410 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~  410 (478)
                                     ....||+|+++..-           .++.     +.+.+.|+|||.+++.+....
T Consensus       143 ---------------~~~~fD~v~~~~~~-----------~~~~-----~~~~~~L~pgG~lv~~~~~~~  181 (215)
T 2yxe_A          143 ---------------PLAPYDRIYTTAAG-----------PKIP-----EPLIRQLKDGGKLLMPVGRYL  181 (215)
T ss_dssp             ---------------GGCCEEEEEESSBB-----------SSCC-----HHHHHTEEEEEEEEEEESSSS
T ss_pred             ---------------CCCCeeEEEECCch-----------HHHH-----HHHHHHcCCCcEEEEEECCCC
Confidence                           24579999995211           1111     478999999999999886553

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=98.58  E-value=8.6e-08  Score=93.97  Aligned_cols=105  Identities=20%  Similarity=0.265  Sum_probs=80.7

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC-CCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL-EDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~-~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||+|.|.++..+.+..+.+|++||+++.+++.|++.+.. ...++++++.+|+.+.-                 
T Consensus        83 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------------  145 (297)
T 2o57_A           83 QAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP-----------------  145 (297)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS-----------------
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCC-----------------
Confidence            579999999999999988887678999999999999999987531 12467999999986530                 


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVI  407 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~  407 (478)
                                   ..+.+||+|++.-    ....+   +.   -..+|+.+++.|+|||.+++...
T Consensus       146 -------------~~~~~fD~v~~~~----~l~~~---~~---~~~~l~~~~~~LkpgG~l~~~~~  188 (297)
T 2o57_A          146 -------------CEDNSYDFIWSQD----AFLHS---PD---KLKVFQECARVLKPRGVMAITDP  188 (297)
T ss_dssp             -------------SCTTCEEEEEEES----CGGGC---SC---HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -------------CCCCCEeEEEecc----hhhhc---CC---HHHHHHHHHHHcCCCeEEEEEEe
Confidence                         1456899999831    10001   11   37899999999999999988653

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=98.58  E-value=1.3e-07  Score=93.20  Aligned_cols=107  Identities=15%  Similarity=0.122  Sum_probs=81.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCC--CCCCeEEEEchHHHHHHHHHhhhcCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLE--DGEFLQVSVGDAIEFLEKLARQIVGKNPDS  338 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~--~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~  338 (478)
                      +.+||.||+|.|.++..|.+.+  ..+|++||+++.+++.|++.+...  ..++++++++|+.++-..  .         
T Consensus        37 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~--~---------  105 (299)
T 3g5t_A           37 RKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFL--G---------  105 (299)
T ss_dssp             CSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGG--C---------
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCcc--c---------
Confidence            6799999999999999998754  689999999999999999886432  246899999998764210  0         


Q ss_pred             CCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          339 FGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                   .......+||+|++..    .   +    ..+--..+++.+++.|+|||.+++
T Consensus       106 -------------~~~~~~~~fD~V~~~~----~---l----~~~~~~~~l~~~~~~LkpgG~l~i  147 (299)
T 3g5t_A          106 -------------ADSVDKQKIDMITAVE----C---A----HWFDFEKFQRSAYANLRKDGTIAI  147 (299)
T ss_dssp             -------------TTTTTSSCEEEEEEES----C---G----GGSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             -------------cccccCCCeeEEeHhh----H---H----HHhCHHHHHHHHHHhcCCCcEEEE
Confidence                         0000136899999942    0   1    112447899999999999999987

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=98.58  E-value=2.7e-07  Score=85.93  Aligned_cols=129  Identities=13%  Similarity=0.164  Sum_probs=88.1

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHH-----HHHHHhhhcCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEF-----LEKLARQIVGKNPD  337 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~-----l~~~~~~~~~~~~~  337 (478)
                      ..+||.+|+|.|.++..+.+. ..+|++||++|..           ..++++++.+|..+.     +.+....       
T Consensus        26 g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~-----------~~~~v~~~~~D~~~~~~~~~~~~~~~~-------   86 (191)
T 3dou_A           26 GDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEME-----------EIAGVRFIRCDIFKETIFDDIDRALRE-------   86 (191)
T ss_dssp             TCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCC-----------CCTTCEEEECCTTSSSHHHHHHHHHHH-------
T ss_pred             CCEEEEEeecCCHHHHHHHHc-CCcEEEEeccccc-----------cCCCeEEEEccccCHHHHHHHHHHhhc-------
Confidence            469999999999999999887 7899999999851           235799999997642     1111100       


Q ss_pred             CCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC----ChHHHHHHHHHccCcCcEEEEEeCCCCchH
Q 038592          338 SFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF----VRKDVLLAARLILSDFGIFVMNVIPPNRSF  413 (478)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f----~~~efl~~~~~~L~~~Gilv~N~~~~~~~~  413 (478)
                                       ....+||+|+.|....  ..|... ....    +....++.+.+.|+|||.|++-+.....  
T Consensus        87 -----------------~~~~~~D~Vlsd~~~~--~~g~~~-~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~--  144 (191)
T 3dou_A           87 -----------------EGIEKVDDVVSDAMAK--VSGIPS-RDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDM--  144 (191)
T ss_dssp             -----------------HTCSSEEEEEECCCCC--CCSCHH-HHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTH--
T ss_pred             -----------------ccCCcceEEecCCCcC--CCCCcc-cCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCC--
Confidence                             0113899999986211  111100 0000    1246788899999999999987765432  


Q ss_pred             HHHHHHHHHHhcCccEEEe
Q 038592          414 YDMLIQEFRDVFQELYEID  432 (478)
Q Consensus       414 ~~~v~~~l~~vF~~v~~~~  432 (478)
                      ...+...+++.|..|...+
T Consensus       145 ~~~~~~~l~~~F~~v~~~k  163 (191)
T 3dou_A          145 TNDFIAIWRKNFSSYKISK  163 (191)
T ss_dssp             HHHHHHHHGGGEEEEEEEC
T ss_pred             HHHHHHHHHHhcCEEEEEC
Confidence            3567888899999887665

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=98.57  E-value=5.4e-08  Score=91.75  Aligned_cols=108  Identities=22%  Similarity=0.212  Sum_probs=80.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      +.+||.||+|.|.++..+.+. +.++++||+++.+++.|++.+... ..+++++.+|..++-                  
T Consensus        38 ~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~------------------   97 (246)
T 1y8c_A           38 FDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEMLSEAENKFRSQ-GLKPRLACQDISNLN------------------   97 (246)
T ss_dssp             TTEEEEETCTTSTTHHHHGGG-SSEEEEECSCHHHHHHHHHHHHHT-TCCCEEECCCGGGCC------------------
T ss_pred             CCeEEEeCCCCCHHHHHHHHC-CCcEEEEECCHHHHHHHHHHHhhc-CCCeEEEecccccCC------------------
Confidence            579999999999999888876 679999999999999999886422 127899999987541                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                   ...+||+|++..+.   ...+   +..-....+|+.+++.|+|||.+++.+..+
T Consensus        98 -------------~~~~fD~v~~~~~~---l~~~---~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  145 (246)
T 1y8c_A           98 -------------INRKFDLITCCLDS---TNYI---IDSDDLKKYFKAVSNHLKEGGVFIFDINSY  145 (246)
T ss_dssp             -------------CSCCEEEEEECTTG---GGGC---CSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred             -------------ccCCceEEEEcCcc---cccc---CCHHHHHHHHHHHHHhcCCCcEEEEEecCH
Confidence                         22679999983211   1001   000023689999999999999999877643

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=98.57  E-value=1.6e-07  Score=95.33  Aligned_cols=103  Identities=24%  Similarity=0.182  Sum_probs=77.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||+|.|.++.++.+....+|++||+++ +++.|++.+... ..++++++.+|+.++-                 
T Consensus        65 ~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------------  126 (340)
T 2fyt_A           65 DKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVH-----------------  126 (340)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSC-----------------
T ss_pred             CCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhc-----------------
Confidence            579999999999999999887446999999997 899999876321 2368999999987641                 


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEE
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFV  403 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv  403 (478)
                                   .+..+||+|+.+....    .+  .... .-..++..+++.|+|||.++
T Consensus       127 -------------~~~~~~D~Ivs~~~~~----~l--~~~~-~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          127 -------------LPVEKVDVIISEWMGY----FL--LFES-MLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             -------------CSCSCEEEEEECCCBT----TB--TTTC-HHHHHHHHHHHHEEEEEEEE
T ss_pred             -------------CCCCcEEEEEEcCchh----hc--cCHH-HHHHHHHHHHhhcCCCcEEE
Confidence                         1346899999853110    00  0111 23579999999999999998

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=98.56  E-value=2.4e-07  Score=91.74  Aligned_cols=144  Identities=15%  Similarity=0.153  Sum_probs=92.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.+|+|.|.++..+.+.++.+|++||+++.++++|++..... ...+++++.+|..+.+.                
T Consensus       124 ~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~----------------  187 (284)
T 1nv8_A          124 IKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFK----------------  187 (284)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGG----------------
T ss_pred             CCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcc----------------
Confidence            4699999999999999888775579999999999999999876321 23479999999987531                


Q ss_pred             ccccCCCccCCCCCCCCce---eEEEEeCCCCCCCCCC-----CCCCCCCC----hHHHHHHHH-HccCcCcEEEEEeCC
Q 038592          342 CSLKDGNFLDNSDRVDNKF---DVIMVDLDSGDARNGT-----SAPPVEFV----RKDVLLAAR-LILSDFGIFVMNVIP  408 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~y---DvIivDv~s~d~~~g~-----s~Pp~~f~----~~efl~~~~-~~L~~~Gilv~N~~~  408 (478)
                                      .+|   |+|+.+.--......+     ..|...++    ..+|++.+. +.|+|||.+++-+..
T Consensus       188 ----------------~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~  251 (284)
T 1nv8_A          188 ----------------EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE  251 (284)
T ss_dssp             ----------------GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT
T ss_pred             ----------------cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECc
Confidence                            257   9999963111000000     00100000    127999999 999999999986654


Q ss_pred             CCchHHHHHHHHHHHhcCccEEEeecccceEEEEEEc
Q 038592          409 PNRSFYDMLIQEFRDVFQELYEIDVGNEENFVLIATG  445 (478)
Q Consensus       409 ~~~~~~~~v~~~l~~vF~~v~~~~v~~~~N~Vl~a~~  445 (478)
                      ...   +    .+.+.|......+--.+...++++.+
T Consensus       252 ~q~---~----~v~~~~~~~~~~~D~~g~~R~~~~~~  281 (284)
T 1nv8_A          252 DQV---E----ELKKIVSDTVFLKDSAGKYRFLLLNR  281 (284)
T ss_dssp             TCH---H----HHTTTSTTCEEEECTTSSEEEEEEEC
T ss_pred             hHH---H----HHHHHHHhCCeecccCCCceEEEEEE
Confidence            322   2    23444543322221223456666654

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=98.56  E-value=4.4e-08  Score=92.66  Aligned_cols=101  Identities=20%  Similarity=0.276  Sum_probs=77.6

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCC-------CEEEEEECChHHHHHHHHhcCCCC-----CCCeEEEEchHHHHHHHHHhh
Q 038592          263 RPKALCVGVGGGALVSFLRTQLD-------FEVVGVEMDEVVLRVARQYFGLED-----GEFLQVSVGDAIEFLEKLARQ  330 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~-------~~V~~VEiDp~Vl~vA~~~Fg~~~-----d~rl~v~v~Dg~~~l~~~~~~  330 (478)
                      ..+||.||+|.|.++..+.+..+       .+|++||+++.+++.|++.+....     .++++++.+|+.+.+.     
T Consensus        85 ~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-----  159 (227)
T 1r18_A           85 GARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYP-----  159 (227)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCG-----
T ss_pred             CCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCC-----
Confidence            46999999999999988887643       599999999999999998764211     3579999999876321     


Q ss_pred             hcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          331 IVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                               ....||+|+++...           .+     +++.+.+.|+|||.+++.+...
T Consensus       160 -------------------------~~~~fD~I~~~~~~-----------~~-----~~~~~~~~LkpgG~lvi~~~~~  197 (227)
T 1r18_A          160 -------------------------PNAPYNAIHVGAAA-----------PD-----TPTELINQLASGGRLIVPVGPD  197 (227)
T ss_dssp             -------------------------GGCSEEEEEECSCB-----------SS-----CCHHHHHTEEEEEEEEEEESCS
T ss_pred             -------------------------cCCCccEEEECCch-----------HH-----HHHHHHHHhcCCCEEEEEEecC
Confidence                                     23579999985321           11     2377899999999999998764

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=98.56  E-value=9.1e-08  Score=90.85  Aligned_cols=104  Identities=24%  Similarity=0.203  Sum_probs=75.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.+|+|.|.++..|.+..  ..+|++||+++.+++.+.+....  .++++++.+|+.+...- .            
T Consensus        78 ~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~--~~~v~~~~~d~~~~~~~-~------------  142 (233)
T 2ipx_A           78 GAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKK--RTNIIPVIEDARHPHKY-R------------  142 (233)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHH--CTTEEEECSCTTCGGGG-G------------
T ss_pred             CCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhc--cCCeEEEEcccCChhhh-c------------
Confidence            4699999999999999998874  47999999998765544433221  16799999998764210 0            


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeC
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVI  407 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~  407 (478)
                                    ....+||+|++|...          |.  ....++..+++.|+|||.+++.+.
T Consensus       143 --------------~~~~~~D~V~~~~~~----------~~--~~~~~~~~~~~~LkpgG~l~i~~~  183 (233)
T 2ipx_A          143 --------------MLIAMVDVIFADVAQ----------PD--QTRIVALNAHTFLRNGGHFVISIK  183 (233)
T ss_dssp             --------------GGCCCEEEEEECCCC----------TT--HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             --------------ccCCcEEEEEEcCCC----------cc--HHHHHHHHHHHHcCCCeEEEEEEc
Confidence                          134679999996531          11  225578889999999999998554

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=98.56  E-value=1.6e-07  Score=88.47  Aligned_cols=98  Identities=19%  Similarity=0.263  Sum_probs=77.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.||+|.|.++..+.+.. .+|++||+++.+++.|++.+....  +++++.+|+.+.+.                 
T Consensus        71 ~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~--~v~~~~~d~~~~~~-----------------  130 (231)
T 1vbf_A           71 GQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYN--NIKLILGDGTLGYE-----------------  130 (231)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCS--SEEEEESCGGGCCG-----------------
T ss_pred             CCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcC--CeEEEECCcccccc-----------------
Confidence            5699999999999999888875 899999999999999999876432  79999999876221                 


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                   ...+||+|+++..           ..++.     ..+++.|+|||.+++.....
T Consensus       131 -------------~~~~fD~v~~~~~-----------~~~~~-----~~~~~~L~pgG~l~~~~~~~  168 (231)
T 1vbf_A          131 -------------EEKPYDRVVVWAT-----------APTLL-----CKPYEQLKEGGIMILPIGVG  168 (231)
T ss_dssp             -------------GGCCEEEEEESSB-----------BSSCC-----HHHHHTEEEEEEEEEEECSS
T ss_pred             -------------cCCCccEEEECCc-----------HHHHH-----HHHHHHcCCCcEEEEEEcCC
Confidence                         2457999998521           11222     36889999999999887654

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.56  E-value=8.9e-08  Score=88.46  Aligned_cols=108  Identities=16%  Similarity=0.186  Sum_probs=77.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      +.+||.+|+|+|.+...+....+.+|++||+++.+++.|++.+... ..+++++.+|+.++-                  
T Consensus        24 ~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~------------------   84 (209)
T 2p8j_A           24 DKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSREN-NFKLNISKGDIRKLP------------------   84 (209)
T ss_dssp             CSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHH-TCCCCEEECCTTSCC------------------
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhc-CCceEEEECchhhCC------------------
Confidence            5799999999998643333445789999999999999999875321 246888999886530                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                  ....+||+|++.  .  ....+  ++.  ....+++.+++.|+|||.+++...+.
T Consensus        85 ------------~~~~~fD~v~~~--~--~l~~~--~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~  131 (209)
T 2p8j_A           85 ------------FKDESMSFVYSY--G--TIFHM--RKN--DVKEAIDEIKRVLKPGGLACINFLTT  131 (209)
T ss_dssp             ------------SCTTCEEEEEEC--S--CGGGS--CHH--HHHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred             ------------CCCCceeEEEEc--C--hHHhC--CHH--HHHHHHHHHHHHcCCCcEEEEEEecc
Confidence                        135689999983  1  10001  111  24789999999999999999877543

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=98.55  E-value=3.6e-07  Score=88.26  Aligned_cols=138  Identities=18%  Similarity=0.292  Sum_probs=91.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHH----HHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVL----RVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNP  336 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl----~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~  336 (478)
                      ..+||.+|+|.|+++..+.+..  ..+|++||+++.++    +.|++.      +++.++++|+...-..          
T Consensus        77 g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r------~nv~~i~~Da~~~~~~----------  140 (232)
T 3id6_C           77 GTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR------PNIFPLLADARFPQSY----------  140 (232)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC------TTEEEEECCTTCGGGT----------
T ss_pred             CCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc------CCeEEEEcccccchhh----------
Confidence            4699999999999999998874  57999999999775    455442      4799999998743100          


Q ss_pred             CCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC-------
Q 038592          337 DSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP-------  409 (478)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~-------  409 (478)
                                       .....+||+|++|+..          |.  ...-+...+++.|+|||.|++-+-.+       
T Consensus       141 -----------------~~~~~~~D~I~~d~a~----------~~--~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~  191 (232)
T 3id6_C          141 -----------------KSVVENVDVLYVDIAQ----------PD--QTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKD  191 (232)
T ss_dssp             -----------------TTTCCCEEEEEECCCC----------TT--HHHHHHHHHHHHEEEEEEEEEEEC-------CC
T ss_pred             -----------------hccccceEEEEecCCC----------hh--HHHHHHHHHHHhCCCCeEEEEEEccCCcccCCC
Confidence                             0123579999998521          11  22334566777999999999865322       


Q ss_pred             CchHHHHHHHHHHHh-cCccEEEeec--ccceEEEEEEc
Q 038592          410 NRSFYDMLIQEFRDV-FQELYEIDVG--NEENFVLIATG  445 (478)
Q Consensus       410 ~~~~~~~v~~~l~~v-F~~v~~~~v~--~~~N~Vl~a~~  445 (478)
                      ..+..+.+...|++. |.-+..+...  +....+++|.+
T Consensus       192 ~~e~~~~~~~~L~~~gf~~~~~~~l~p~~~~h~~v~~~~  230 (232)
T 3id6_C          192 PKEIYKTEVEKLENSNFETIQIINLDPYDKDHAIVLSKY  230 (232)
T ss_dssp             SSSSTTHHHHHHHHTTEEEEEEEECTTTCSSCEEEEEEE
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEeccCCCcCceEEEEEEe
Confidence            122345667777764 6655555553  23456666653

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=98.55  E-value=5e-08  Score=91.84  Aligned_cols=101  Identities=23%  Similarity=0.232  Sum_probs=77.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCC-----CCCCeEEEEchHHHHHHHHHhhhcCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLE-----DGEFLQVSVGDAIEFLEKLARQIVGKN  335 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~-----~d~rl~v~v~Dg~~~l~~~~~~~~~~~  335 (478)
                      ..+||.||+|.|.++..+.+..  ..+|+++|+++.+++.|++.+...     ..++++++.+|+.....          
T Consensus        78 ~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----------  147 (226)
T 1i1n_A           78 GAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA----------  147 (226)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG----------
T ss_pred             CCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcc----------
Confidence            5699999999999998888764  369999999999999999875321     13579999999864310          


Q ss_pred             CCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          336 PDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                          ....||+|+++...           .+     +++.+.+.|+|||.+++.+.+.
T Consensus       148 --------------------~~~~fD~i~~~~~~-----------~~-----~~~~~~~~LkpgG~lv~~~~~~  185 (226)
T 1i1n_A          148 --------------------EEAPYDAIHVGAAA-----------PV-----VPQALIDQLKPGGRLILPVGPA  185 (226)
T ss_dssp             --------------------GGCCEEEEEECSBB-----------SS-----CCHHHHHTEEEEEEEEEEESCT
T ss_pred             --------------------cCCCcCEEEECCch-----------HH-----HHHHHHHhcCCCcEEEEEEecC
Confidence                                24569999986321           12     3467899999999999988754

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=98.54  E-value=9.2e-08  Score=91.03  Aligned_cols=101  Identities=18%  Similarity=0.163  Sum_probs=75.7

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.||+|.|.++..+.+..+.+|++||+++.+++.|++.+....-++++++.+|+..-+.                 
T Consensus        92 ~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----------------  154 (235)
T 1jg1_A           92 GMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFP-----------------  154 (235)
T ss_dssp             TCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG-----------------
T ss_pred             CCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCC-----------------
Confidence            469999999999999888876448999999999999999987642222459999999822110                 


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                   ...+||+|+++..           ...+.     ..+.+.|+|||.+++.+...
T Consensus       155 -------------~~~~fD~Ii~~~~-----------~~~~~-----~~~~~~L~pgG~lvi~~~~~  192 (235)
T 1jg1_A          155 -------------PKAPYDVIIVTAG-----------APKIP-----EPLIEQLKIGGKLIIPVGSY  192 (235)
T ss_dssp             -------------GGCCEEEEEECSB-----------BSSCC-----HHHHHTEEEEEEEEEEECSS
T ss_pred             -------------CCCCccEEEECCc-----------HHHHH-----HHHHHhcCCCcEEEEEEecC
Confidence                         2335999998521           11222     36889999999999988755

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=98.54  E-value=2.8e-07  Score=92.90  Aligned_cols=104  Identities=21%  Similarity=0.219  Sum_probs=77.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||+|.|.++.++.+....+|++||+++ +++.|++.+... ..++++++.+|+.++-                 
T Consensus        39 ~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------------  100 (328)
T 1g6q_1           39 DKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVH-----------------  100 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSC-----------------
T ss_pred             CCEEEEecCccHHHHHHHHHCCCCEEEEEChHH-HHHHHHHHHHHcCCCCCEEEEECchhhcc-----------------
Confidence            469999999999999999887446999999995 899998876321 2467999999987641                 


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                   .+..+||+|+.+.....    +  .... .-..++..+++.|+|||+++.
T Consensus       101 -------------~~~~~~D~Ivs~~~~~~----l--~~~~-~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1          101 -------------LPFPKVDIIISEWMGYF----L--LYES-MMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             -------------CSSSCEEEEEECCCBTT----B--STTC-CHHHHHHHHHHHEEEEEEEES
T ss_pred             -------------CCCCcccEEEEeCchhh----c--ccHH-HHHHHHHHHHhhcCCCeEEEE
Confidence                         13468999999632110    1  0111 236789999999999999973

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.53  E-value=9.8e-08  Score=92.91  Aligned_cols=111  Identities=19%  Similarity=0.058  Sum_probs=81.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||+|.|.++..+.+....+|++||+++.+++.|++.+... ...+++++++|+.+.--                
T Consensus        65 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------------  128 (298)
T 1ri5_A           65 GDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHM----------------  128 (298)
T ss_dssp             TCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCC----------------
T ss_pred             CCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCcccccc----------------
Confidence            5799999999998888777765569999999999999999887532 23578999999875410                


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC-ChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF-VRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f-~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                   ....+||+|++..-       +....... ....+++.+++.|+|||.+++.+...
T Consensus       129 -------------~~~~~fD~v~~~~~-------l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  177 (298)
T 1ri5_A          129 -------------DLGKEFDVISSQFS-------FHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR  177 (298)
T ss_dssp             -------------CCSSCEEEEEEESC-------GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             -------------CCCCCcCEEEECch-------hhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence                         03567999998521       10000000 23689999999999999999887554

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=98.52  E-value=1.6e-07  Score=95.37  Aligned_cols=104  Identities=18%  Similarity=0.121  Sum_probs=76.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||+|.|.++.++.+....+|++||+++ +++.|++.+... ..++++++.+|..++-                 
T Consensus        51 ~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-----------------  112 (348)
T 2y1w_A           51 DKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS-----------------  112 (348)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCC-----------------
T ss_pred             cCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCC-----------------
Confidence            579999999999999999887556999999997 778988775321 2368999999986540                 


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                    ...+||+|+.+....    .+  ..+  .-.+++..+++.|+|||+++++.
T Consensus       113 --------------~~~~~D~Ivs~~~~~----~~--~~~--~~~~~l~~~~~~LkpgG~li~~~  155 (348)
T 2y1w_A          113 --------------LPEQVDIIISEPMGY----ML--FNE--RMLESYLHAKKYLKPSGNMFPTI  155 (348)
T ss_dssp             --------------CSSCEEEEEECCCBT----TB--TTT--SHHHHHHHGGGGEEEEEEEESCE
T ss_pred             --------------CCCceeEEEEeCchh----cC--ChH--HHHHHHHHHHhhcCCCeEEEEec
Confidence                          235799999952110    00  011  12567788899999999998543

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=98.52  E-value=1.6e-08  Score=96.20  Aligned_cols=102  Identities=17%  Similarity=0.199  Sum_probs=76.6

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCC-CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLED-GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~-d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.+|+|.|.++..+.+. +.+|++||+++.+++.|++.+.... .++++++++|+.++.                 
T Consensus        79 ~~~vLD~gcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------------  140 (241)
T 3gdh_A           79 CDVVVDAFCGVGGNTIQFALT-GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-----------------  140 (241)
T ss_dssp             CSEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-----------------
T ss_pred             CCEEEECccccCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-----------------
Confidence            579999999999999998876 5899999999999999998764322 257999999999874                 


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                    ...+||+|++|..-.    +...      ....+..+++.|+|||++++..
T Consensus       141 --------------~~~~~D~v~~~~~~~----~~~~------~~~~~~~~~~~L~pgG~~i~~~  181 (241)
T 3gdh_A          141 --------------SFLKADVVFLSPPWG----GPDY------ATAETFDIRTMMSPDGFEIFRL  181 (241)
T ss_dssp             --------------GGCCCSEEEECCCCS----SGGG------GGSSSBCTTTSCSSCHHHHHHH
T ss_pred             --------------ccCCCCEEEECCCcC----Ccch------hhhHHHHHHhhcCCcceeHHHH
Confidence                          235799999963111    1110      1114556888999999877543

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=98.52  E-value=1.3e-07  Score=95.73  Aligned_cols=111  Identities=14%  Similarity=0.163  Sum_probs=86.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCC-CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLED-GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~-d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.+|+|.|.++.. .. ...+|++||++|..++.|++.+.... .++++++.+|+.+++                 
T Consensus       196 ~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~-----------------  256 (336)
T 2yx1_A          196 NDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD-----------------  256 (336)
T ss_dssp             TCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC-----------------
T ss_pred             CCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc-----------------
Confidence            46999999999999988 65 46799999999999999998875332 357999999998762                 


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHH
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEF  421 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l  421 (478)
                                      .+||+|++|.            |.  ...+++..+.+.|+|||++++...+..   ...+.+.+
T Consensus       257 ----------------~~fD~Vi~dp------------P~--~~~~~l~~~~~~L~~gG~l~~~~~~~~---~~~~~~~l  303 (336)
T 2yx1_A          257 ----------------VKGNRVIMNL------------PK--FAHKFIDKALDIVEEGGVIHYYTIGKD---FDKAIKLF  303 (336)
T ss_dssp             ----------------CCEEEEEECC------------TT--TGGGGHHHHHHHEEEEEEEEEEEEESS---SHHHHHHH
T ss_pred             ----------------CCCcEEEECC------------cH--hHHHHHHHHHHHcCCCCEEEEEEeecC---chHHHHHH
Confidence                            4699999963            21  124899999999999999988665554   33455666


Q ss_pred             HHhc
Q 038592          422 RDVF  425 (478)
Q Consensus       422 ~~vF  425 (478)
                      ++.+
T Consensus       304 ~~~~  307 (336)
T 2yx1_A          304 EKKC  307 (336)
T ss_dssp             HHHS
T ss_pred             HHhc
Confidence            6664

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=98.52  E-value=2e-07  Score=94.30  Aligned_cols=132  Identities=17%  Similarity=0.162  Sum_probs=93.7

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      +.+||.+|+|.|.++..+.+.. ..+|++||+++.+++.|++.+... +...+++.+|..++                  
T Consensus       197 ~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~-~~~~~~~~~d~~~~------------------  257 (343)
T 2pjd_A          197 KGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAAN-GVEGEVFASNVFSE------------------  257 (343)
T ss_dssp             CSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHT-TCCCEEEECSTTTT------------------
T ss_pred             CCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh-CCCCEEEEcccccc------------------
Confidence            4689999999999999988875 579999999999999999886421 22367888888654                  


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC-------ChHHHHHHHHHccCcCcEEEEEeCCCCchHH
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF-------VRKDVLLAARLILSDFGIFVMNVIPPNRSFY  414 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f-------~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~  414 (478)
                                    ...+||+|+++.            |-+.       ....+++.+++.|+|||.+++-.... .. +
T Consensus       258 --------------~~~~fD~Iv~~~------------~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~-~~-~  309 (343)
T 2pjd_A          258 --------------VKGRFDMIISNP------------PFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAF-LP-Y  309 (343)
T ss_dssp             --------------CCSCEEEEEECC------------CCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETT-SS-H
T ss_pred             --------------ccCCeeEEEECC------------CcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCC-CC-c
Confidence                          245799999942            2111       13789999999999999998744322 12 1


Q ss_pred             HHHHHHHHHhcCccEEEeecccceEEEEEEc
Q 038592          415 DMLIQEFRDVFQELYEIDVGNEENFVLIATG  445 (478)
Q Consensus       415 ~~v~~~l~~vF~~v~~~~v~~~~N~Vl~a~~  445 (478)
                         -..+.+.|..+..+.- +..-.|+-+.+
T Consensus       310 ---~~~l~~~f~~~~~~~~-~~gf~v~~~~k  336 (343)
T 2pjd_A          310 ---PDVLDETFGFHEVIAQ-TGRFKVYRAIM  336 (343)
T ss_dssp             ---HHHHHHHHSCCEEEEE-CSSEEEEEEEC
T ss_pred             ---HHHHHHhcCceEEEee-CCCEEEEEEEe
Confidence               2456777887765542 33445555544

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=98.52  E-value=3.8e-07  Score=82.85  Aligned_cols=115  Identities=14%  Similarity=0.159  Sum_probs=80.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      +.+||.+|+|+|.++..+.+..  +|++||+++.+++.         .++++++.+|+.+.+                  
T Consensus        24 ~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~---------~~~~~~~~~d~~~~~------------------   74 (170)
T 3q87_B           24 MKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES---------HRGGNLVRADLLCSI------------------   74 (170)
T ss_dssp             SCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT---------CSSSCEEECSTTTTB------------------
T ss_pred             CCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc---------ccCCeEEECChhhhc------------------
Confidence            4699999999999999998875  99999999999988         357899999987642                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCC-----CCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHH
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPV-----EFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDML  417 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~-----~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v  417 (478)
                                   ...+||+|+.+..-.    ..  ++.     .-...++++.+.+.| |||.+++-.....  ..+.+
T Consensus        75 -------------~~~~fD~i~~n~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~--~~~~l  132 (170)
T 3q87_B           75 -------------NQESVDVVVFNPPYV----PD--TDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEAN--RPKEV  132 (170)
T ss_dssp             -------------CGGGCSEEEECCCCB----TT--CCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGG--CHHHH
T ss_pred             -------------ccCCCCEEEECCCCc----cC--CccccccCCcchHHHHHHHHhhC-CCCEEEEEEecCC--CHHHH
Confidence                         346799999953110    00  010     001256888888888 9999987654432  23445


Q ss_pred             HHHHHHh-cCcc
Q 038592          418 IQEFRDV-FQEL  428 (478)
Q Consensus       418 ~~~l~~v-F~~v  428 (478)
                      .+.+++. |..+
T Consensus       133 ~~~l~~~gf~~~  144 (170)
T 3q87_B          133 LARLEERGYGTR  144 (170)
T ss_dssp             HHHHHHTTCEEE
T ss_pred             HHHHHHCCCcEE
Confidence            5556554 5543

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=98.51  E-value=1e-06  Score=81.55  Aligned_cols=115  Identities=20%  Similarity=0.220  Sum_probs=81.7

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.+|+|.|.++..+.+....+|++||+++.+++.|++.+....- +++++.+|+.++                   
T Consensus        50 ~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~-------------------  109 (207)
T 1wy7_A           50 GKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEF-------------------  109 (207)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGC-------------------
T ss_pred             cCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC-CEEEEECchHHc-------------------
Confidence            569999999999999998876445899999999999999988753222 799999998764                   


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHHH
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEFR  422 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l~  422 (478)
                                   + .+||+|++|..-...        ..-....+++.+.+.|  +|++++.+..  ......+.+.+.
T Consensus       110 -------------~-~~~D~v~~~~p~~~~--------~~~~~~~~l~~~~~~l--~~~~~~~~~~--~~~~~~~~~~l~  163 (207)
T 1wy7_A          110 -------------N-SRVDIVIMNPPFGSQ--------RKHADRPFLLKAFEIS--DVVYSIHLAK--PEVRRFIEKFSW  163 (207)
T ss_dssp             -------------C-CCCSEEEECCCCSSS--------STTTTHHHHHHHHHHC--SEEEEEEECC--HHHHHHHHHHHH
T ss_pred             -------------C-CCCCEEEEcCCCccc--------cCCchHHHHHHHHHhc--CcEEEEEeCC--cCCHHHHHHHHH
Confidence                         1 379999997421111        1113478999999998  6777665432  233344444454


Q ss_pred             H
Q 038592          423 D  423 (478)
Q Consensus       423 ~  423 (478)
                      +
T Consensus       164 ~  164 (207)
T 1wy7_A          164 E  164 (207)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=98.51  E-value=1.2e-07  Score=94.92  Aligned_cols=101  Identities=19%  Similarity=0.129  Sum_probs=77.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.||+|.|.++..+.+..  ..+|++||+++.+++.|++.+....-++++++.+|+.+.+.               
T Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~---------------  140 (317)
T 1dl5_A           76 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP---------------  140 (317)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG---------------
T ss_pred             cCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccc---------------
Confidence            5699999999999998888764  36899999999999999988642222459999999976431               


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                     ...+||+|+++..-           .++.     +.+++.|+|||++++.+.+.
T Consensus       141 ---------------~~~~fD~Iv~~~~~-----------~~~~-----~~~~~~LkpgG~lvi~~~~~  178 (317)
T 1dl5_A          141 ---------------EFSPYDVIFVTVGV-----------DEVP-----ETWFTQLKEGGRVIVPINLK  178 (317)
T ss_dssp             ---------------GGCCEEEEEECSBB-----------SCCC-----HHHHHHEEEEEEEEEEBCBG
T ss_pred             ---------------cCCCeEEEEEcCCH-----------HHHH-----HHHHHhcCCCcEEEEEECCC
Confidence                           23579999996311           1111     57889999999999987543

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.51  E-value=1.4e-07  Score=94.37  Aligned_cols=116  Identities=14%  Similarity=0.101  Sum_probs=73.6

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCC-CC-----CeEEEEchHHH--HHHHHHhhhcCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLED-GE-----FLQVSVGDAIE--FLEKLARQIVGK  334 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~-d~-----rl~v~v~Dg~~--~l~~~~~~~~~~  334 (478)
                      ..+||.||||+|.....+......+|++||+++.+++.|++...-.. ..     +++++++|...  +-.++...    
T Consensus        49 ~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~----  124 (302)
T 2vdw_A           49 KRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREV----  124 (302)
T ss_dssp             CCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTT----
T ss_pred             CCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcc----
Confidence            46999999999964433333335799999999999999998753111 10     25677777621  10111110    


Q ss_pred             CCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          335 NPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                          ..+.+||+|++-. .   . .....+++  ...++++++++|+|||+|++.+.++
T Consensus       125 --------------------~~~~~FD~V~~~~-~---l-hy~~~~~~--~~~~l~~~~r~LkpGG~~i~~~~~~  172 (302)
T 2vdw_A          125 --------------------FYFGKFNIIDWQF-A---I-HYSFHPRH--YATVMNNLSELTASGGKVLITTMDG  172 (302)
T ss_dssp             --------------------CCSSCEEEEEEES-C---G-GGTCSTTT--HHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             --------------------ccCCCeeEEEECc-h---H-HHhCCHHH--HHHHHHHHHHHcCCCCEEEEEeCCH
Confidence                                1346899998731 1   0 00011223  2789999999999999999877654

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=98.50  E-value=3.9e-08  Score=97.58  Aligned_cols=99  Identities=16%  Similarity=0.089  Sum_probs=80.6

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.+|+|.|.++..+......+|+++|+||..++.+++...+. -.++++++.+|+.++.                 
T Consensus       126 g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~-----------------  188 (278)
T 3k6r_A          126 DELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-----------------  188 (278)
T ss_dssp             TCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-----------------
T ss_pred             CCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhc-----------------
Confidence            4699999999999988887775679999999999999999876543 2468999999998873                 


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                    ....||.|++|.           ||   ...+||..+.++|++||++.+..
T Consensus       189 --------------~~~~~D~Vi~~~-----------p~---~~~~~l~~a~~~lk~gG~ih~~~  225 (278)
T 3k6r_A          189 --------------GENIADRILMGY-----------VV---RTHEFIPKALSIAKDGAIIHYHN  225 (278)
T ss_dssp             --------------CCSCEEEEEECC-----------CS---SGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             --------------cccCCCEEEECC-----------CC---cHHHHHHHHHHHcCCCCEEEEEe
Confidence                          356799999863           22   24679999999999999987643

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=98.50  E-value=2.5e-07  Score=95.08  Aligned_cols=110  Identities=19%  Similarity=0.244  Sum_probs=82.1

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhc--------CCCCCCCeEEEEchHHHHHHHHHhhhc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYF--------GLEDGEFLQVSVGDAIEFLEKLARQIV  332 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~F--------g~~~d~rl~v~v~Dg~~~l~~~~~~~~  332 (478)
                      +.+||.||+|.|.++..|.+..  +.+|++||+++.+++.|++.+        |....++++++.+|+.+....      
T Consensus        84 ~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~------  157 (383)
T 4fsd_A           84 GATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATA------  157 (383)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGC------
T ss_pred             CCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhc------
Confidence            5799999999999998888873  579999999999999999875        312346899999998764210      


Q ss_pred             CCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592          333 GKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                        ...+..+.+||+|+...-       +...+   -...+|+.+++.|+|||.|++..
T Consensus       158 ------------------~~~~~~~~~fD~V~~~~~-------l~~~~---d~~~~l~~~~r~LkpgG~l~i~~  203 (383)
T 4fsd_A          158 ------------------EPEGVPDSSVDIVISNCV-------CNLST---NKLALFKEIHRVLRDGGELYFSD  203 (383)
T ss_dssp             ------------------BSCCCCTTCEEEEEEESC-------GGGCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ------------------ccCCCCCCCEEEEEEccc-------hhcCC---CHHHHHHHHHHHcCCCCEEEEEE
Confidence                              000124578999998521       11111   13789999999999999999854

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.50  E-value=3.4e-07  Score=94.57  Aligned_cols=101  Identities=15%  Similarity=0.048  Sum_probs=81.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCC---------------CCCCeEEEEchHHHHHHH
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLE---------------DGEFLQVSVGDAIEFLEK  326 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~---------------~d~rl~v~v~Dg~~~l~~  326 (478)
                      +.+||.+|+|.|.++..+.... ..+|++||+|+..++.|++.....               .-++++++.+|+.+++..
T Consensus        48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~  127 (378)
T 2dul_A           48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE  127 (378)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred             CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHh
Confidence            4699999999999998888875 579999999999999999875321               112399999999999865


Q ss_pred             HHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592          327 LARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                                   ...+||+|++|.+.              ...+|+..+.+.|+++|++.+..
T Consensus       128 -----------------------------~~~~fD~I~lDP~~--------------~~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          128 -----------------------------RHRYFHFIDLDPFG--------------SPMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             -----------------------------STTCEEEEEECCSS--------------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -----------------------------ccCCCCEEEeCCCC--------------CHHHHHHHHHHhcCCCCEEEEEe
Confidence                                         23579999997421              12689999999999999888754

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.49  E-value=7e-07  Score=82.10  Aligned_cols=147  Identities=12%  Similarity=0.084  Sum_probs=84.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC---CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL---DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~---~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      ..+||.||+|.|.++..+.+..   +.+|++||+++..           ..++++++.+|..+.-..     ...|+...
T Consensus        23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~~~v~~~~~d~~~~~~~-----~~~~~~~i   86 (201)
T 2plw_A           23 NKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PIPNVYFIQGEIGKDNMN-----NIKNINYI   86 (201)
T ss_dssp             TEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CCTTCEEEECCTTTTSSC-----CC------
T ss_pred             CCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CCCCceEEEccccchhhh-----hhcccccc
Confidence            4689999999999999998875   4799999999931           125688899988654100     00000000


Q ss_pred             Ccccc--cCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC----ChHHHHHHHHHccCcCcEEEEEeCCCCchH
Q 038592          340 GACSL--KDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF----VRKDVLLAARLILSDFGIFVMNVIPPNRSF  413 (478)
Q Consensus       340 ~~~~~--~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f----~~~efl~~~~~~L~~~Gilv~N~~~~~~~~  413 (478)
                      .....  ...+...  .....+||+|+.|..-..  .|... +...    ....+++.+++.|+|||.|++.+.....  
T Consensus        87 ~~~~~~~~~~~~~~--~~~~~~fD~v~~~~~~~~--~g~~~-~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~--  159 (201)
T 2plw_A           87 DNMNNNSVDYKLKE--ILQDKKIDIILSDAAVPC--IGNKI-DDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQ--  159 (201)
T ss_dssp             -----CHHHHHHHH--HHTTCCEEEEEECCCCCC--CSCHH-HHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTT--
T ss_pred             ccccchhhHHHHHh--hcCCCcccEEEeCCCcCC--CCCcc-cCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCC--
Confidence            00000  0000000  003457999999742110  01000 0000    0124788999999999999987765422  


Q ss_pred             HHHHHHHHHHhcCccEEEe
Q 038592          414 YDMLIQEFRDVFQELYEID  432 (478)
Q Consensus       414 ~~~v~~~l~~vF~~v~~~~  432 (478)
                      ...+...++..|..+..++
T Consensus       160 ~~~l~~~l~~~f~~v~~~~  178 (201)
T 2plw_A          160 TNNLKTYLKGMFQLVHTTK  178 (201)
T ss_dssp             HHHHHHHHHTTEEEEEECC
T ss_pred             HHHHHHHHHHHHheEEEEC
Confidence            3456777788887665543

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=98.48  E-value=9e-07  Score=86.18  Aligned_cols=157  Identities=13%  Similarity=0.075  Sum_probs=106.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.||+|.|.++..|.+.. ..+|++||+||..++.|++..... -.++++++.+|+.+.+.               
T Consensus        22 g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~---------------   86 (244)
T 3gnl_A           22 NERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIE---------------   86 (244)
T ss_dssp             SEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC---------------
T ss_pred             CCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccC---------------
Confidence            3589999999999999998874 469999999999999999875321 24689999999988641               


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHH
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQE  420 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~  420 (478)
                                     ++.+||+|++-        ||-   . -+-.+++......|+++|.|+++-...    ...+.+.
T Consensus        87 ---------------~~~~~D~Ivia--------gmG---g-~lI~~IL~~~~~~L~~~~~lIlq~~~~----~~~lr~~  135 (244)
T 3gnl_A           87 ---------------KKDAIDTIVIA--------GMG---G-TLIRTILEEGAAKLAGVTKLILQPNIA----AWQLREW  135 (244)
T ss_dssp             ---------------GGGCCCEEEEE--------EEC---H-HHHHHHHHHTGGGGTTCCEEEEEESSC----HHHHHHH
T ss_pred             ---------------ccccccEEEEe--------CCc---h-HHHHHHHHHHHHHhCCCCEEEEEcCCC----hHHHHHH
Confidence                           12359999871        221   1 134779999999999999999876543    3345555


Q ss_pred             HHHh-cCccEEEee--cccceEEEEEEcCCCCCCcchhhhhhhHHHHH
Q 038592          421 FRDV-FQELYEIDV--GNEENFVLIATGLSIVSSGSDCENAFGKKLRL  465 (478)
Q Consensus       421 l~~v-F~~v~~~~v--~~~~N~Vl~a~~~~~~~~~~~~~~~~~~~l~~  465 (478)
                      |.+. |.-+-..-+  .+-.-.|+.+.+.......++.+-.|++.|.+
T Consensus       136 L~~~Gf~i~~E~lv~e~~k~Yeii~~~~~~~~~~~~~~~~~~G~~l~~  183 (244)
T 3gnl_A          136 SEQNNWLITSEAILREDNKVYEIMVLAPSEKPVTWTKQEIFFGPCLLK  183 (244)
T ss_dssp             HHHHTEEEEEEEEEEETTEEEEEEEEEECSSCCCCCHHHHHHCHHHHH
T ss_pred             HHHCCCEEEEEEEEEECCEEEEEEEEEeCCCCCCCCHHHHHhCHHHHh
Confidence            6655 553322222  23345677777654333334445556666543

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.48  E-value=1.2e-06  Score=86.09  Aligned_cols=113  Identities=19%  Similarity=0.081  Sum_probs=81.7

Q ss_pred             CCeEEEEeCch---hHHHHHHHhh-CCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHH--HHHHH---hhhcC
Q 038592          263 RPKALCVGVGG---GALVSFLRTQ-LDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEF--LEKLA---RQIVG  333 (478)
Q Consensus       263 ~~~VLvIGlGg---G~L~~~L~~~-~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~--l~~~~---~~~~~  333 (478)
                      ..+||.||+|.   |.+...+.+. ++.+|++||+||.|++.|++.+.  ..++++++.+|..+.  +-...   ..   
T Consensus        78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~--~~~~v~~~~~D~~~~~~~~~~~~~~~~---  152 (274)
T 2qe6_A           78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLA--KDPNTAVFTADVRDPEYILNHPDVRRM---  152 (274)
T ss_dssp             CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHT--TCTTEEEEECCTTCHHHHHHSHHHHHH---
T ss_pred             CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcC--CCCCeEEEEeeCCCchhhhccchhhcc---
Confidence            46999999999   9887766665 47899999999999999999874  346899999999753  21000   00   


Q ss_pred             CCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          334 KNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                           ....+||+|++-.       -+..-|.. .-..+|+.+++.|+|||.|++.....
T Consensus       153 ---------------------~d~~~~d~v~~~~-------vlh~~~d~-~~~~~l~~~~~~L~pGG~l~i~~~~~  199 (274)
T 2qe6_A          153 ---------------------IDFSRPAAIMLVG-------MLHYLSPD-VVDRVVGAYRDALAPGSYLFMTSLVD  199 (274)
T ss_dssp             ---------------------CCTTSCCEEEETT-------TGGGSCTT-THHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred             ---------------------CCCCCCEEEEEec-------hhhhCCcH-HHHHHHHHHHHhCCCCcEEEEEEecC
Confidence                                 0224799999821       11111222 34789999999999999999876554

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=98.48  E-value=5.1e-08  Score=93.71  Aligned_cols=44  Identities=18%  Similarity=0.177  Sum_probs=38.6

Q ss_pred             CCeEEEEeCchhHHHHHHHhh--C-CCEEEEEECChHHHHHHHHhcC
Q 038592          263 RPKALCVGVGGGALVSFLRTQ--L-DFEVVGVEMDEVVLRVARQYFG  306 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~--~-~~~V~~VEiDp~Vl~vA~~~Fg  306 (478)
                      +.+||.+|+|+|.++..+.+.  . ..+|++||+|+.+++.|++...
T Consensus        52 ~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~   98 (250)
T 1o9g_A           52 PVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLA   98 (250)
T ss_dssp             CEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHH
T ss_pred             CCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHH
Confidence            569999999999999988876  3 5799999999999999997653

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.48  E-value=1.2e-06  Score=80.01  Aligned_cols=126  Identities=19%  Similarity=0.195  Sum_probs=85.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCC----------CEEEEEECChHHHHHHHHhcCCCCCCCeEEE-EchHHHHH--HHHHh
Q 038592          263 RPKALCVGVGGGALVSFLRTQLD----------FEVVGVEMDEVVLRVARQYFGLEDGEFLQVS-VGDAIEFL--EKLAR  329 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~----------~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~-v~Dg~~~l--~~~~~  329 (478)
                      ..+||.||+|.|.++..|.+..+          .+|++||+++..        .   -++++++ .+|....-  .....
T Consensus        23 ~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~--------~---~~~~~~~~~~d~~~~~~~~~~~~   91 (196)
T 2nyu_A           23 GLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF--------P---LEGATFLCPADVTDPRTSQRILE   91 (196)
T ss_dssp             TCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC--------C---CTTCEEECSCCTTSHHHHHHHHH
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc--------c---CCCCeEEEeccCCCHHHHHHHHH
Confidence            46999999999999999998853          799999999941        1   2468888 88865431  11100


Q ss_pred             hhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCCh--------HHHHHHHHHccCcCcE
Q 038592          330 QIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVR--------KDVLLAARLILSDFGI  401 (478)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~--------~efl~~~~~~L~~~Gi  401 (478)
                      .                        ..+.+||+|+.|.... .. +     ....+        ..+++.+.+.|+|||.
T Consensus        92 ~------------------------~~~~~fD~V~~~~~~~-~~-~-----~~~~~~~~~~~~~~~~l~~~~~~LkpgG~  140 (196)
T 2nyu_A           92 V------------------------LPGRRADVILSDMAPN-AT-G-----FRDLDHDRLISLCLTLLSVTPDILQPGGT  140 (196)
T ss_dssp             H------------------------SGGGCEEEEEECCCCC-CC-S-----CHHHHHHHHHHHHHHHHHHHHHHEEEEEE
T ss_pred             h------------------------cCCCCCcEEEeCCCCC-CC-C-----CcccCHHHHHHHHHHHHHHHHHHhcCCCE
Confidence            0                        0235799999974211 00 0     01111        3789999999999999


Q ss_pred             EEEEeCCCCchHHHHHHHHHHHhcCccEEEe
Q 038592          402 FVMNVIPPNRSFYDMLIQEFRDVFQELYEID  432 (478)
Q Consensus       402 lv~N~~~~~~~~~~~v~~~l~~vF~~v~~~~  432 (478)
                      |++...... . ...+...++..|..+..+.
T Consensus       141 lv~~~~~~~-~-~~~~~~~l~~~f~~v~~~~  169 (196)
T 2nyu_A          141 FLCKTWAGS-Q-SRRLQRRLTEEFQNVRIIK  169 (196)
T ss_dssp             EEEEECCSG-G-GHHHHHHHHHHEEEEEEEC
T ss_pred             EEEEecCCc-c-HHHHHHHHHHHhcceEEEC
Confidence            999876552 2 3456777888888776554

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=98.47  E-value=1.1e-06  Score=81.19  Aligned_cols=94  Identities=17%  Similarity=0.178  Sum_probs=70.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.+|+|.|.++..+.+....+|++||+++.+++.|++.+.     +++++.+|+.++                   
T Consensus        52 ~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~-----~~~~~~~d~~~~-------------------  107 (200)
T 1ne2_A           52 GRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEI-------------------  107 (200)
T ss_dssp             TSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGC-------------------
T ss_pred             CCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC-----CCEEEECcHHHC-------------------
Confidence            56999999999999998887733589999999999999999875     689999998764                   


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                   + .+||+|++|..-..    .   +. -....+++.+.+.|  |+++++
T Consensus       108 -------------~-~~~D~v~~~~p~~~----~---~~-~~~~~~l~~~~~~~--g~~~~~  145 (200)
T 1ne2_A          108 -------------S-GKYDTWIMNPPFGS----V---VK-HSDRAFIDKAFETS--MWIYSI  145 (200)
T ss_dssp             -------------C-CCEEEEEECCCC---------------CHHHHHHHHHHE--EEEEEE
T ss_pred             -------------C-CCeeEEEECCCchh----c---cC-chhHHHHHHHHHhc--CcEEEE
Confidence                         2 57999999631100    0   01 12367999999998  454443

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.46  E-value=1.2e-07  Score=94.01  Aligned_cols=116  Identities=16%  Similarity=0.074  Sum_probs=81.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-------CCCCeEEEEchHHHHHHHHHhhhcCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-------DGEFLQVSVGDAIEFLEKLARQIVGKN  335 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-------~d~rl~v~v~Dg~~~l~~~~~~~~~~~  335 (478)
                      +.+||.||+|.|.++..+.+....+|+++|+++.+++.|++.+...       ...+++++++|+.+..-.  .      
T Consensus        35 ~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~--~------  106 (313)
T 3bgv_A           35 DITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLI--D------  106 (313)
T ss_dssp             CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCST--T------
T ss_pred             CCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchh--h------
Confidence            5799999999999888888765679999999999999999876311       234789999998764100  0      


Q ss_pred             CCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC-ChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          336 PDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF-VRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f-~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                        .+              .....+||+|++..    ...  .+ .... .-..+|+.+++.|+|||++++.+...
T Consensus       107 --~~--------------~~~~~~fD~V~~~~----~l~--~~-~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  158 (313)
T 3bgv_A          107 --KF--------------RDPQMCFDICSCQF----VCH--YS-FESYEQADMMLRNACERLSPGGYFIGTTPNS  158 (313)
T ss_dssp             --TC--------------SSTTCCEEEEEEET----CGG--GG-GGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred             --hc--------------ccCCCCEEEEEEec----chh--hc-cCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence              00              01235799999842    000  00 0000 12589999999999999999887654

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=98.46  E-value=4.3e-07  Score=95.53  Aligned_cols=135  Identities=14%  Similarity=0.182  Sum_probs=93.7

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-C-CEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-D-FEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~-~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.+|+|.|..+..|.... + .+|+++|+++..++.+++.+....-++++++.+|+.++...              
T Consensus       260 g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~--------------  325 (450)
T 2yxl_A          260 GETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEI--------------  325 (450)
T ss_dssp             TCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSS--------------
T ss_pred             cCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchh--------------
Confidence            4699999999999999998876 4 79999999999999999875321124699999998754210              


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCC-CCC--------CCC-----ChHHHHHHHHHccCcCcEEEEEe
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTS-APP--------VEF-----VRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s-~Pp--------~~f-----~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                    ..+.+||+|++|+..+..  |+. --|        ..+     +...+|+.+.+.|+|||.+++-.
T Consensus       326 --------------~~~~~fD~Vl~D~Pcsg~--g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~t  389 (450)
T 2yxl_A          326 --------------IGEEVADKVLLDAPCTSS--GTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTT  389 (450)
T ss_dssp             --------------SCSSCEEEEEEECCCCCG--GGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             --------------hccCCCCEEEEcCCCCCC--eeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence                          123579999999754321  211 011        111     12679999999999999999877


Q ss_pred             CCCCchHHHHHHHHHHHhcCc
Q 038592          407 IPPNRSFYDMLIQEFRDVFQE  427 (478)
Q Consensus       407 ~~~~~~~~~~v~~~l~~vF~~  427 (478)
                      .+..++--..++..+.+-++.
T Consensus       390 cs~~~~ene~~v~~~l~~~~~  410 (450)
T 2yxl_A          390 CSIFKEENEKNIRWFLNVHPE  410 (450)
T ss_dssp             SCCCGGGTHHHHHHHHHHCSS
T ss_pred             CCCChhhHHHHHHHHHHhCCC
Confidence            666544334455555455544

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=98.46  E-value=8e-07  Score=92.83  Aligned_cols=134  Identities=18%  Similarity=0.162  Sum_probs=92.7

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.+|+|.|..+..+.+.. +.+|+++|+++..++.+++.+.... -+++++.+|+.++....              
T Consensus       247 g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g-~~~~~~~~D~~~~~~~~--------------  311 (429)
T 1sqg_A          247 GEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLG-MKATVKQGDGRYPSQWC--------------  311 (429)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTT-CCCEEEECCTTCTHHHH--------------
T ss_pred             cCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcC-CCeEEEeCchhhchhhc--------------
Confidence            4699999999999999998876 4799999999999999998763211 13789999998764321              


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCC-CCCCC--------CC-----ChHHHHHHHHHccCcCcEEEEEeC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGT-SAPPV--------EF-----VRKDVLLAARLILSDFGIFVMNVI  407 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~-s~Pp~--------~f-----~~~efl~~~~~~L~~~Gilv~N~~  407 (478)
                                    ...+||+|++|+..+..  |+ .-.|.        .+     +..++++.+.+.|+|||.+++-..
T Consensus       312 --------------~~~~fD~Vl~D~Pcsg~--g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystc  375 (429)
T 1sqg_A          312 --------------GEQQFDRILLDAPCSAT--GVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC  375 (429)
T ss_dssp             --------------TTCCEEEEEEECCCCCG--GGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred             --------------ccCCCCEEEEeCCCCcc--cccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence                          34679999999844321  21 11111        00     125889999999999999998776


Q ss_pred             CCCchHHHHHHHHHHHhcCc
Q 038592          408 PPNRSFYDMLIQEFRDVFQE  427 (478)
Q Consensus       408 ~~~~~~~~~v~~~l~~vF~~  427 (478)
                      +..++--..++..+-+-++.
T Consensus       376 s~~~~ene~~v~~~l~~~~~  395 (429)
T 1sqg_A          376 SVLPEENSLQIKAFLQRTAD  395 (429)
T ss_dssp             CCCGGGTHHHHHHHHHHCTT
T ss_pred             CCChhhHHHHHHHHHHhCCC
Confidence            55433333444444444443

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.45  E-value=4.7e-07  Score=87.28  Aligned_cols=101  Identities=24%  Similarity=0.241  Sum_probs=77.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      +.+||.||+|.|.++..+.+. +.+|++||+++.+++.|++...    .  .++.+|+.++-                  
T Consensus        55 ~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~----~--~~~~~d~~~~~------------------  109 (260)
T 2avn_A           55 PCRVLDLGGGTGKWSLFLQER-GFEVVLVDPSKEMLEVAREKGV----K--NVVEAKAEDLP------------------  109 (260)
T ss_dssp             CCEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHHTC----S--CEEECCTTSCC------------------
T ss_pred             CCeEEEeCCCcCHHHHHHHHc-CCeEEEEeCCHHHHHHHHhhcC----C--CEEECcHHHCC------------------
Confidence            579999999999999988876 6799999999999999998864    1  27777765430                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                  ..+.+||+|++.-.-      ...++.   ...+++.+++.|+|||.+++.+.++
T Consensus       110 ------------~~~~~fD~v~~~~~~------~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~  155 (260)
T 2avn_A          110 ------------FPSGAFEAVLALGDV------LSYVEN---KDKAFSEIRRVLVPDGLLIATVDNF  155 (260)
T ss_dssp             ------------SCTTCEEEEEECSSH------HHHCSC---HHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred             ------------CCCCCEEEEEEcchh------hhcccc---HHHHHHHHHHHcCCCeEEEEEeCCh
Confidence                        135679999983100      000111   4789999999999999999887664

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=98.45  E-value=6.7e-07  Score=86.05  Aligned_cols=155  Identities=18%  Similarity=0.088  Sum_probs=103.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.||+|.|.++..+.+.. ..+|++||++|..++.|++..... -.++++++.+|+.+-+.               
T Consensus        16 g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~---------------   80 (225)
T 3kr9_A           16 GAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFE---------------   80 (225)
T ss_dssp             TEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC---------------
T ss_pred             CCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcc---------------
Confidence            3589999999999999998874 469999999999999999875321 24589999999987541               


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHH
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQE  420 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~  420 (478)
                                     ...+||+|++-        ||-   .. +-.+++..+...|+++|.|+++-...    ...+.+.
T Consensus        81 ---------------~~~~~D~Ivia--------G~G---g~-~i~~Il~~~~~~L~~~~~lVlq~~~~----~~~vr~~  129 (225)
T 3kr9_A           81 ---------------ETDQVSVITIA--------GMG---GR-LIARILEEGLGKLANVERLILQPNNR----EDDLRIW  129 (225)
T ss_dssp             ---------------GGGCCCEEEEE--------EEC---HH-HHHHHHHHTGGGCTTCCEEEEEESSC----HHHHHHH
T ss_pred             ---------------cCcCCCEEEEc--------CCC---hH-HHHHHHHHHHHHhCCCCEEEEECCCC----HHHHHHH
Confidence                           12269999872        221   11 34789999999999999999977632    2344445


Q ss_pred             HHHh-cCccEEEee--cccceEEEEEEcCCCCCCcchhhhhhhHHHHH
Q 038592          421 FRDV-FQELYEIDV--GNEENFVLIATGLSIVSSGSDCENAFGKKLRL  465 (478)
Q Consensus       421 l~~v-F~~v~~~~v--~~~~N~Vl~a~~~~~~~~~~~~~~~~~~~l~~  465 (478)
                      |.+. |.-+-..-+  .+-.-.|+.+.+.+..  .++.+-.|++.|.+
T Consensus       130 L~~~Gf~i~~e~lv~e~~~~Yeii~~~~~~~~--~~~~~~~~G~~l~~  175 (225)
T 3kr9_A          130 LQDHGFQIVAESILEEAGKFYEILVVEAGQMK--LSASDVRFGPFLSK  175 (225)
T ss_dssp             HHHTTEEEEEEEEEEETTEEEEEEEEEESCCC--CCHHHHHHCTTHHH
T ss_pred             HHHCCCEEEEEEEEEECCEEEEEEEEEeCCCC--CCHHHHHhCHHHHh
Confidence            5544 443222212  2223467777765432  23334455555533

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=98.44  E-value=7.4e-07  Score=90.38  Aligned_cols=111  Identities=18%  Similarity=0.114  Sum_probs=80.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.+|+|.|+++..+....  +.+|+++|+|+.+++.|++.+....-++++++.+|+.++..               
T Consensus       204 ~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~---------------  268 (354)
T 3tma_A          204 GMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPR---------------  268 (354)
T ss_dssp             TCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGG---------------
T ss_pred             CCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcc---------------
Confidence            4689999999999998888753  58999999999999999987642211279999999988631               


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC--ChHHHHHHHHHccCcCcEEEEEeC
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF--VRKDVLLAARLILSDFGIFVMNVI  407 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f--~~~efl~~~~~~L~~~Gilv~N~~  407 (478)
                                     ....||+|++|..-+...    .+...+  +-..+++.+++.|+|||.+++-..
T Consensus       269 ---------------~~~~~D~Ii~npPyg~r~----~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~  318 (354)
T 3tma_A          269 ---------------FFPEVDRILANPPHGLRL----GRKEGLFHLYWDFLRGALALLPPGGRVALLTL  318 (354)
T ss_dssp             ---------------TCCCCSEEEECCCSCC--------CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred             ---------------ccCCCCEEEECCCCcCcc----CCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence                           234589999974221110    000111  116799999999999999997544

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=98.44  E-value=7.4e-07  Score=90.96  Aligned_cols=100  Identities=16%  Similarity=0.114  Sum_probs=77.0

Q ss_pred             CCCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          262 FRPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       262 ~~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      ...+||.||+|.|.++..+.+.. +.+++++|+ |.+++.|++.+.-. ..++++++.+|..+.                
T Consensus       202 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~----------------  264 (369)
T 3gwz_A          202 GAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFET----------------  264 (369)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTC----------------
T ss_pred             cCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCC----------------
Confidence            36799999999999998888775 689999999 99999999887422 247899999998721                


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCCh---HHHHHHHHHccCcCcEEEEE
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVR---KDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~---~efl~~~~~~L~~~Gilv~N  405 (478)
                                     .+. .||+|++---       +    ..+-+   ..+|+.+++.|+|||.+++.
T Consensus       265 ---------------~p~-~~D~v~~~~v-------l----h~~~d~~~~~~L~~~~~~L~pgG~l~i~  306 (369)
T 3gwz_A          265 ---------------IPD-GADVYLIKHV-------L----HDWDDDDVVRILRRIATAMKPDSRLLVI  306 (369)
T ss_dssp             ---------------CCS-SCSEEEEESC-------G----GGSCHHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             ---------------CCC-CceEEEhhhh-------h----ccCCHHHHHHHHHHHHHHcCCCCEEEEE
Confidence                           122 7999998310       1    11222   36999999999999999874

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.44  E-value=2.1e-07  Score=89.89  Aligned_cols=95  Identities=16%  Similarity=0.246  Sum_probs=76.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||+|+|.++..+.+.. +.+|++||+++.+++.|++..     +++.++.+|+.+.-                 
T Consensus        86 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~-----------------  143 (269)
T 1p91_A           86 ATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRLP-----------------  143 (269)
T ss_dssp             CCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSCS-----------------
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcchhhCC-----------------
Confidence            5799999999999998888875 689999999999999999875     46788898875430                 


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                   ..+..||+|+.- +.          +      .+++.+++.|+|||.+++.....
T Consensus       144 -------------~~~~~fD~v~~~-~~----------~------~~l~~~~~~L~pgG~l~~~~~~~  181 (269)
T 1p91_A          144 -------------FSDTSMDAIIRI-YA----------P------CKAEELARVVKPGGWVITATPGP  181 (269)
T ss_dssp             -------------BCTTCEEEEEEE-SC----------C------CCHHHHHHHEEEEEEEEEEEECT
T ss_pred             -------------CCCCceeEEEEe-CC----------h------hhHHHHHHhcCCCcEEEEEEcCH
Confidence                         135679999972 11          1      25889999999999999877655

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.43  E-value=4.2e-07  Score=84.57  Aligned_cols=101  Identities=16%  Similarity=0.192  Sum_probs=77.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      +.+||.||+|.|.++..+.+. +.+++++|+++.+++.|++.+.       +++.+|+.++..                 
T Consensus        33 ~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~~~~~~~~~~~~~~-------~~~~~d~~~~~~-----------------   87 (230)
T 3cc8_A           33 WKEVLDIGCSSGALGAAIKEN-GTRVSGIEAFPEAAEQAKEKLD-------HVVLGDIETMDM-----------------   87 (230)
T ss_dssp             CSEEEEETCTTSHHHHHHHTT-TCEEEEEESSHHHHHHHHTTSS-------EEEESCTTTCCC-----------------
T ss_pred             CCcEEEeCCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHhCC-------cEEEcchhhcCC-----------------
Confidence            579999999999999999887 6899999999999999998752       677888764310                 


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                 +..+.+||+|++.-    ....+   +   -...+++.+++.|+|||.+++.+...
T Consensus        88 -----------~~~~~~fD~v~~~~----~l~~~---~---~~~~~l~~~~~~L~~gG~l~~~~~~~  133 (230)
T 3cc8_A           88 -----------PYEEEQFDCVIFGD----VLEHL---F---DPWAVIEKVKPYIKQNGVILASIPNV  133 (230)
T ss_dssp             -----------CSCTTCEEEEEEES----CGGGS---S---CHHHHHHHTGGGEEEEEEEEEEEECT
T ss_pred             -----------CCCCCccCEEEECC----hhhhc---C---CHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence                       11356899999841    11011   1   12689999999999999999877554

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=98.42  E-value=1.3e-06  Score=84.32  Aligned_cols=155  Identities=17%  Similarity=0.060  Sum_probs=105.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.||+|.|.++..+.+.. ..+|++||+||..++.|++..... -.++++++.+|+.+.+.               
T Consensus        22 g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~---------------   86 (230)
T 3lec_A           22 GARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFE---------------   86 (230)
T ss_dssp             TEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC---------------
T ss_pred             CCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccc---------------
Confidence            3589999999999999998874 469999999999999999876321 24689999999988641               


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHH
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQE  420 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~  420 (478)
                                     +..+||+|++-        ||-   . -+-.+++......|+++|.|+++-...    .+.+.+.
T Consensus        87 ---------------~~~~~D~Ivia--------GmG---g-~lI~~IL~~~~~~l~~~~~lIlqp~~~----~~~lr~~  135 (230)
T 3lec_A           87 ---------------EADNIDTITIC--------GMG---G-RLIADILNNDIDKLQHVKTLVLQPNNR----EDDLRKW  135 (230)
T ss_dssp             ---------------GGGCCCEEEEE--------EEC---H-HHHHHHHHHTGGGGTTCCEEEEEESSC----HHHHHHH
T ss_pred             ---------------cccccCEEEEe--------CCc---h-HHHHHHHHHHHHHhCcCCEEEEECCCC----hHHHHHH
Confidence                           22369999872        221   1 134779999999999999999876543    3344455


Q ss_pred             HHHh-cCccEEEeec--ccceEEEEEEcCCCCCCcchhhhhhhHHHHH
Q 038592          421 FRDV-FQELYEIDVG--NEENFVLIATGLSIVSSGSDCENAFGKKLRL  465 (478)
Q Consensus       421 l~~v-F~~v~~~~v~--~~~N~Vl~a~~~~~~~~~~~~~~~~~~~l~~  465 (478)
                      |.+. |.-+-..-+.  +-.-.|+.+.+.+..  .++.+-.|++.|.+
T Consensus       136 L~~~Gf~i~~E~lv~e~~~~Yeii~~~~~~~~--~~~~~~~~G~~l~~  181 (230)
T 3lec_A          136 LAANDFEIVAEDILTENDKRYEILVVKHGHMN--LTAKELRFGPFLLS  181 (230)
T ss_dssp             HHHTTEEEEEEEEEEC--CEEEEEEEEECCCC--CCHHHHHHCHHHHH
T ss_pred             HHHCCCEEEEEEEEEECCEEEEEEEEEeCCCC--CCHHHHHhCHHHhh
Confidence            5554 4432222222  233567777766432  33445556666644

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.40  E-value=3.8e-07  Score=91.38  Aligned_cols=100  Identities=17%  Similarity=0.087  Sum_probs=77.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.||+|.|.++..+.+.. +.+++++|+ |.+++.|++++.-. ..++++++.+|..+-                 
T Consensus       170 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----------------  231 (332)
T 3i53_A          170 LGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDP-----------------  231 (332)
T ss_dssp             GSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC-----------------
T ss_pred             CCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCC-----------------
Confidence            5799999999999998888764 689999999 99999999886421 247899999998621                 


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCCh---HHHHHHHHHccCcCcEEEEEe
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVR---KDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~---~efl~~~~~~L~~~Gilv~N~  406 (478)
                                    .+. .||+|++--    .   +    ..+-+   ..+|+++++.|+|||.+++.-
T Consensus       232 --------------~p~-~~D~v~~~~----v---l----h~~~~~~~~~~l~~~~~~L~pgG~l~i~e  274 (332)
T 3i53_A          232 --------------LPA-GAGGYVLSA----V---L----HDWDDLSAVAILRRCAEAAGSGGVVLVIE  274 (332)
T ss_dssp             --------------CCC-SCSEEEEES----C---G----GGSCHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             --------------CCC-CCcEEEEeh----h---h----ccCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence                          122 799999821    0   1    11222   689999999999999998754

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.40  E-value=8.6e-07  Score=87.13  Aligned_cols=115  Identities=14%  Similarity=0.085  Sum_probs=74.9

Q ss_pred             CCeEEEEeCchhHHHHH----HHhh-CCCEE--EEEECChHHHHHHHHhcCCC-CCCCe--EEEEchHHHHHHHHHhhhc
Q 038592          263 RPKALCVGVGGGALVSF----LRTQ-LDFEV--VGVEMDEVVLRVARQYFGLE-DGEFL--QVSVGDAIEFLEKLARQIV  332 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~----L~~~-~~~~V--~~VEiDp~Vl~vA~~~Fg~~-~d~rl--~v~v~Dg~~~l~~~~~~~~  332 (478)
                      +.+||.||+|+|.++..    +... ++.+|  ++||+++.|++.|++.+.-. .-+++  .+..+|+.++..+...   
T Consensus        53 ~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---  129 (292)
T 2aot_A           53 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLE---  129 (292)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHT---
T ss_pred             CCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcc---
Confidence            46899999999976542    2222 35654  99999999999999886321 11334  4556777666432110   


Q ss_pred             CCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCc
Q 038592          333 GKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNR  411 (478)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~  411 (478)
                                           +..+.+||+|++-.    ....+   +   --..+|+.++++|+|||.+++-..+.+.
T Consensus       130 ---------------------~~~~~~fD~V~~~~----~l~~~---~---d~~~~l~~~~r~LkpgG~l~i~~~~~~~  177 (292)
T 2aot_A          130 ---------------------KKELQKWDFIHMIQ----MLYYV---K---DIPATLKFFHSLLGTNAKMLIIVVSGSS  177 (292)
T ss_dssp             ---------------------TTCCCCEEEEEEES----CGGGC---S---CHHHHHHHHHHTEEEEEEEEEEEECTTS
T ss_pred             ---------------------ccCCCceeEEEEee----eeeec---C---CHHHHHHHHHHHcCCCcEEEEEEecCCc
Confidence                                 01356899999831    10001   1   1367999999999999999986655543

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.38  E-value=2.8e-07  Score=89.00  Aligned_cols=97  Identities=18%  Similarity=0.085  Sum_probs=74.6

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      +.+||.||+|.|.++..+.+ .+.+|++||+++.+++.|++..      +++++++|+.++-                  
T Consensus        35 ~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~d~~~~~------------------   89 (261)
T 3ege_A           35 GSVIADIGAGTGGYSVALAN-QGLFVYAVEPSIVMRQQAVVHP------QVEWFTGYAENLA------------------   89 (261)
T ss_dssp             TCEEEEETCTTSHHHHHHHT-TTCEEEEECSCHHHHHSSCCCT------TEEEECCCTTSCC------------------
T ss_pred             CCEEEEEcCcccHHHHHHHh-CCCEEEEEeCCHHHHHHHHhcc------CCEEEECchhhCC------------------
Confidence            67999999999999998887 5789999999999999887653      7999999986530                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVI  407 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~  407 (478)
                                  ..+.+||+|++-.-       +...+   --..+++.+++.|+ ||.+++...
T Consensus        90 ------------~~~~~fD~v~~~~~-------l~~~~---~~~~~l~~~~~~Lk-gG~~~~~~~  131 (261)
T 3ege_A           90 ------------LPDKSVDGVISILA-------IHHFS---HLEKSFQEMQRIIR-DGTIVLLTF  131 (261)
T ss_dssp             ------------SCTTCBSEEEEESC-------GGGCS---SHHHHHHHHHHHBC-SSCEEEEEE
T ss_pred             ------------CCCCCEeEEEEcch-------Hhhcc---CHHHHHHHHHHHhC-CcEEEEEEc
Confidence                        14578999998421       10011   23789999999999 996655443

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.38  E-value=6e-07  Score=93.16  Aligned_cols=101  Identities=14%  Similarity=0.092  Sum_probs=81.7

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-C-CEEEEEECChHHHHHHHHhcCCCC-CCC-eEEEEchHHHHHH-HHHhhhcCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-D-FEVVGVEMDEVVLRVARQYFGLED-GEF-LQVSVGDAIEFLE-KLARQIVGKNPD  337 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~-~~V~~VEiDp~Vl~vA~~~Fg~~~-d~r-l~v~v~Dg~~~l~-~~~~~~~~~~~~  337 (478)
                      ..+||.+++|.|+++..+.... + .+|++||+++..++.+++...+.. +++ ++++.+|+.++++ +           
T Consensus        53 g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~-----------  121 (392)
T 3axs_A           53 PVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKE-----------  121 (392)
T ss_dssp             CEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSC-----------
T ss_pred             CCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHh-----------
Confidence            4689999999999998888764 4 599999999999999998875432 345 9999999999986 4           


Q ss_pred             CCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592          338 SFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                        ...+||+|++|.+.              ...+|+..+.+.|++||++.+-.
T Consensus       122 ------------------~~~~fD~V~lDP~g--------------~~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          122 ------------------WGFGFDYVDLDPFG--------------TPVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             ------------------CSSCEEEEEECCSS--------------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ------------------hCCCCcEEEECCCc--------------CHHHHHHHHHHHhCCCCEEEEEe
Confidence                              23569999998621              01569999999999999888744

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=98.37  E-value=2.8e-06  Score=83.47  Aligned_cols=108  Identities=15%  Similarity=0.157  Sum_probs=74.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEEC-ChHHHHHHHHhc-----CCCC-C----CCeEEEEch---HHHHHHHHH
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEM-DEVVLRVARQYF-----GLED-G----EFLQVSVGD---AIEFLEKLA  328 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEi-Dp~Vl~vA~~~F-----g~~~-d----~rl~v~v~D---g~~~l~~~~  328 (478)
                      ..+||.||+|.|.++..+.+....+|++||+ ++.+++.|++..     .... .    ++++++..|   ...-+....
T Consensus        80 ~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  159 (281)
T 3bzb_A           80 GKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRCT  159 (281)
T ss_dssp             TCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHHH
T ss_pred             CCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhhc
Confidence            4699999999999998888754359999999 999999999887     2211 1    468887433   222221100


Q ss_pred             hhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEE-eCCCCCCCCCCCCCCCCCChHHHHHHHHHccC---c--CcEE
Q 038592          329 RQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMV-DLDSGDARNGTSAPPVEFVRKDVLLAARLILS---D--FGIF  402 (478)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIiv-Dv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~---~--~Gil  402 (478)
                                                 ...+||+|+. |+.-.        ++   .-..+++.++++|+   |  ||.+
T Consensus       160 ---------------------------~~~~fD~Ii~~dvl~~--------~~---~~~~ll~~l~~~Lk~~~p~~gG~l  201 (281)
T 3bzb_A          160 ---------------------------GLQRFQVVLLADLLSF--------HQ---AHDALLRSVKMLLALPANDPTAVA  201 (281)
T ss_dssp             ---------------------------SCSSBSEEEEESCCSC--------GG---GHHHHHHHHHHHBCCTTTCTTCEE
T ss_pred             ---------------------------cCCCCCEEEEeCcccC--------hH---HHHHHHHHHHHHhcccCCCCCCEE
Confidence                                       2467999987 54211        11   24789999999999   9  9987


Q ss_pred             EEEeCC
Q 038592          403 VMNVIP  408 (478)
Q Consensus       403 v~N~~~  408 (478)
                      ++-+..
T Consensus       202 ~v~~~~  207 (281)
T 3bzb_A          202 LVTFTH  207 (281)
T ss_dssp             EEEECC
T ss_pred             EEEEEe
Confidence            765444

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.37  E-value=5.3e-07  Score=93.74  Aligned_cols=97  Identities=21%  Similarity=0.350  Sum_probs=71.2

Q ss_pred             CCeEEEEeCc-------hhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHH--HHHHHHhhhc
Q 038592          263 RPKALCVGVG-------GGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIE--FLEKLARQIV  332 (478)
Q Consensus       263 ~~~VLvIGlG-------gG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~--~l~~~~~~~~  332 (478)
                      +.+||.||+|       +|....++.+++ +.+|++||+++.+.      +   ..++++++++|+.+  |..+...   
T Consensus       217 ~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~------~---~~~rI~fv~GDa~dlpf~~~l~~---  284 (419)
T 3sso_A          217 QVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH------V---DELRIRTIQGDQNDAEFLDRIAR---  284 (419)
T ss_dssp             CCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG------G---CBTTEEEEECCTTCHHHHHHHHH---
T ss_pred             CCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh------h---cCCCcEEEEecccccchhhhhhc---
Confidence            6899999999       566555566654 78999999999972      1   35789999999865  5543322   


Q ss_pred             CCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592          333 GKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                             ...+||+|+.|... .       . .  -...+|+.+++.|+|||+|++.
T Consensus       285 -----------------------~d~sFDlVisdgsH-~-------~-~--d~~~aL~el~rvLKPGGvlVi~  323 (419)
T 3sso_A          285 -----------------------RYGPFDIVIDDGSH-I-------N-A--HVRTSFAALFPHVRPGGLYVIE  323 (419)
T ss_dssp             -----------------------HHCCEEEEEECSCC-C-------H-H--HHHHHHHHHGGGEEEEEEEEEE
T ss_pred             -----------------------ccCCccEEEECCcc-c-------c-h--hHHHHHHHHHHhcCCCeEEEEE
Confidence                                   23579999986311 0       0 0  1367899999999999999984

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.36  E-value=7.6e-07  Score=89.24  Aligned_cols=124  Identities=15%  Similarity=0.134  Sum_probs=86.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEEC----ChHHHHHHH-HhcCCCCCCCeEEEEc-hHHHHHHHHHhhhcCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEM----DEVVLRVAR-QYFGLEDGEFLQVSVG-DAIEFLEKLARQIVGKNP  336 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEi----Dp~Vl~vA~-~~Fg~~~d~rl~v~v~-Dg~~~l~~~~~~~~~~~~  336 (478)
                      ..+||.||+|.|.++.++.+.  .+|++||+    .+..++.+. +-.   ..++++++.+ |...+             
T Consensus        83 g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~D~~~l-------------  144 (305)
T 2p41_A           83 EGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIPMSTY---GWNLVRLQSGVDVFFI-------------  144 (305)
T ss_dssp             CEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCCCCST---TGGGEEEECSCCTTTS-------------
T ss_pred             CCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHHhhhc---CCCCeEEEeccccccC-------------
Confidence            369999999999999999887  58999999    443322110 101   1256888888 76543             


Q ss_pred             CCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChH----HHHHHHHHccCcCcEEEEEeCCCCch
Q 038592          337 DSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRK----DVLLAARLILSDFGIFVMNVIPPNRS  412 (478)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~----efl~~~~~~L~~~Gilv~N~~~~~~~  412 (478)
                                         +..+||+|++|+...  . |.     .+.+.    .+|..+++.|+|||.|++.+......
T Consensus       145 -------------------~~~~fD~V~sd~~~~--~-g~-----~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~~~~  197 (305)
T 2p41_A          145 -------------------PPERCDTLLCDIGES--S-PN-----PTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMS  197 (305)
T ss_dssp             -------------------CCCCCSEEEECCCCC--C-SS-----HHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSH
T ss_pred             -------------------CcCCCCEEEECCccc--c-Cc-----chhhHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCc
Confidence                               345799999986321  1 11     11111    47888999999999999988876544


Q ss_pred             HHHHHHHHHHHhcCccEEE
Q 038592          413 FYDMLIQEFRDVFQELYEI  431 (478)
Q Consensus       413 ~~~~v~~~l~~vF~~v~~~  431 (478)
                      ....++..+++.|..+...
T Consensus       198 ~~~~~l~~l~~~f~~v~~~  216 (305)
T 2p41_A          198 SVIEKMEALQRKHGGALVR  216 (305)
T ss_dssp             HHHHHHHHHHHHHCCEEEC
T ss_pred             hHHHHHHHHHHHcCCEEEe
Confidence            4567788889999887654

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.33  E-value=1e-06  Score=89.61  Aligned_cols=101  Identities=16%  Similarity=0.111  Sum_probs=74.7

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+|+.||+|.|.++..|.+.. +.++++.|+ |.|++.|+++......+|++++.+|..+-                  
T Consensus       180 ~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~------------------  240 (353)
T 4a6d_A          180 FPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKD------------------  240 (353)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTS------------------
T ss_pred             CCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccC------------------
Confidence            5799999999999888877764 789999998 89999999998766678999999996421                  


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                    +...+|+|++--    .   +..=|.. .....|+++++.|+|||.+++
T Consensus       241 --------------~~~~~D~~~~~~----v---lh~~~d~-~~~~iL~~~~~al~pgg~lli  281 (353)
T 4a6d_A          241 --------------PLPEADLYILAR----V---LHDWADG-KCSHLLERIYHTCKPGGGILV  281 (353)
T ss_dssp             --------------CCCCCSEEEEES----S---GGGSCHH-HHHHHHHHHHHHCCTTCEEEE
T ss_pred             --------------CCCCceEEEeee----e---cccCCHH-HHHHHHHHHHhhCCCCCEEEE
Confidence                          234589999821    0   1000110 125789999999999997766

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.32  E-value=7.9e-07  Score=90.58  Aligned_cols=105  Identities=12%  Similarity=0.041  Sum_probs=76.7

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      +.+||.||+|.|.++..+.+.. +.+++++|+ |.+++.|++.+.-. ..+|++++.+|..+.                 
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----------------  241 (363)
T 3dp7_A          180 PKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDR-----------------  241 (363)
T ss_dssp             CSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSS-----------------
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEcccccc-----------------
Confidence            6799999999999998887764 789999999 99999999987532 236899999997542                 


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                  +..-...||+|++---       +..-+.. ....+|+.+++.|+|||.+++.
T Consensus       242 ------------~~~~p~~~D~v~~~~v-------lh~~~~~-~~~~~l~~~~~~L~pgG~l~i~  286 (363)
T 3dp7_A          242 ------------DVPFPTGFDAVWMSQF-------LDCFSEE-EVISILTRVAQSIGKDSKVYIM  286 (363)
T ss_dssp             ------------SCCCCCCCSEEEEESC-------STTSCHH-HHHHHHHHHHHHCCTTCEEEEE
T ss_pred             ------------CCCCCCCcCEEEEech-------hhhCCHH-HHHHHHHHHHHhcCCCcEEEEE
Confidence                        0001257999998210       1000100 1247899999999999988773

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=98.32  E-value=4.4e-07  Score=96.48  Aligned_cols=104  Identities=19%  Similarity=0.147  Sum_probs=75.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||+|.|.+++++.+....+|++||+++ +++.|++.+... ..++++++.+|..++-                 
T Consensus       159 ~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~-----------------  220 (480)
T 3b3j_A          159 DKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS-----------------  220 (480)
T ss_dssp             TCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCC-----------------
T ss_pred             CCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCc-----------------
Confidence            579999999999999999886567999999999 889998765321 2368999999987640                 


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                    ...+||+|+.+...       ...... -..+.+..+++.|+|||++++..
T Consensus       221 --------------~~~~fD~Ivs~~~~-------~~~~~e-~~~~~l~~~~~~LkpgG~li~~~  263 (480)
T 3b3j_A          221 --------------LPEQVDIIISEPMG-------YMLFNE-RMLESYLHAKKYLKPSGNMFPTI  263 (480)
T ss_dssp             --------------CSSCEEEEECCCCH-------HHHTCH-HHHHHHHHGGGGEEEEEEEESCE
T ss_pred             --------------cCCCeEEEEEeCch-------HhcCcH-HHHHHHHHHHHhcCCCCEEEEEe
Confidence                          23579999984210       000000 11456677889999999998543

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.32  E-value=2.3e-07  Score=91.18  Aligned_cols=126  Identities=15%  Similarity=0.060  Sum_probs=86.1

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC---CCCCeEEE--EchHHHHHHHHHhhhcCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE---DGEFLQVS--VGDAIEFLEKLARQIVGKNPD  337 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~---~d~rl~v~--v~Dg~~~l~~~~~~~~~~~~~  337 (478)
                      ..+||.||+|.|.++..+.+.  .+|++||+++ ++..|++. ...   .+.++.++  .+|+.++              
T Consensus        75 g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~-~~~~~~~~~~v~~~~~~~D~~~l--------------  136 (265)
T 2oxt_A           75 TGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEV-PRITESYGWNIVKFKSRVDIHTL--------------  136 (265)
T ss_dssp             CEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCC-CCCCCBTTGGGEEEECSCCTTTS--------------
T ss_pred             CCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhh-hhhhhccCCCeEEEecccCHhHC--------------
Confidence            458999999999999988876  7999999999 43322211 111   01157777  7787653              


Q ss_pred             CCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCCh----HHHHHHHHHccCcCc--EEEEEeCCCCc
Q 038592          338 SFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVR----KDVLLAARLILSDFG--IFVMNVIPPNR  411 (478)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~----~efl~~~~~~L~~~G--ilv~N~~~~~~  411 (478)
                                        ++.+||+|++|..  ...      +....+    ..+|..+++.|+|||  .|++-+..+..
T Consensus       137 ------------------~~~~fD~V~sd~~--~~~------~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~~~~  190 (265)
T 2oxt_A          137 ------------------PVERTDVIMCDVG--ESS------PKWSVESERTIKILELLEKWKVKNPSADFVVKVLCPYS  190 (265)
T ss_dssp             ------------------CCCCCSEEEECCC--CCC------SCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESCTTS
T ss_pred             ------------------CCCCCcEEEEeCc--ccC------CccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCCCCC
Confidence                              3567999999864  111      111111    137899999999999  99998877544


Q ss_pred             hHHHHHHHHHHHhcCccEEEe
Q 038592          412 SFYDMLIQEFRDVFQELYEID  432 (478)
Q Consensus       412 ~~~~~v~~~l~~vF~~v~~~~  432 (478)
                      ......+..+++.|..+....
T Consensus       191 ~~~~~~l~~l~~~f~~v~~~k  211 (265)
T 2oxt_A          191 VEVMERLSVMQRKWGGGLVRN  211 (265)
T ss_dssp             HHHHHHHHHHHHHHCCEEECC
T ss_pred             hhHHHHHHHHHHHcCCEEEEE
Confidence            333356778888998765554

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.31  E-value=3.8e-07  Score=90.17  Aligned_cols=127  Identities=16%  Similarity=0.082  Sum_probs=87.1

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC---CCCCeEEE--EchHHHHHHHHHhhhcCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE---DGEFLQVS--VGDAIEFLEKLARQIVGKNPD  337 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~---~d~rl~v~--v~Dg~~~l~~~~~~~~~~~~~  337 (478)
                      ..+||.||+|.|.++..+.+.  .+|++||+++ ++..|++. ...   .+.++.++  .+|+.++              
T Consensus        83 g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~-~~~~~~~~~~v~~~~~~~D~~~l--------------  144 (276)
T 2wa2_A           83 KGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEK-PRLVETFGWNLITFKSKVDVTKM--------------  144 (276)
T ss_dssp             CEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCC-CCCCCCTTGGGEEEECSCCGGGC--------------
T ss_pred             CCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhc-hhhhhhcCCCeEEEeccCcHhhC--------------
Confidence            468999999999999988877  7999999999 43333221 111   11267888  8887653              


Q ss_pred             CCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCC---hHHHHHHHHHccCcCc--EEEEEeCCCCch
Q 038592          338 SFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFV---RKDVLLAARLILSDFG--IFVMNVIPPNRS  412 (478)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~---~~efl~~~~~~L~~~G--ilv~N~~~~~~~  412 (478)
                                        ++.+||+|++|..  .. .    +...+-   ...+|+.+.+.|+|||  .|++.+..+...
T Consensus       145 ------------------~~~~fD~Vvsd~~--~~-~----~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~~~~~  199 (276)
T 2wa2_A          145 ------------------EPFQADTVLCDIG--ES-N----PTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLNPYSC  199 (276)
T ss_dssp             ------------------CCCCCSEEEECCC--CC-C----SCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESCCCSH
T ss_pred             ------------------CCCCcCEEEECCC--cC-C----CchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCCCCch
Confidence                              3567999999853  11 0    111111   1137899999999999  999988776444


Q ss_pred             HHHHHHHHHHHhcCccEEEe
Q 038592          413 FYDMLIQEFRDVFQELYEID  432 (478)
Q Consensus       413 ~~~~v~~~l~~vF~~v~~~~  432 (478)
                      .....+..+++.|..+...+
T Consensus       200 ~~~~~l~~l~~~f~~v~v~P  219 (276)
T 2wa2_A          200 DVLEALMKMQARFGGGLIRV  219 (276)
T ss_dssp             HHHHHHHHHHHHHCCEEECC
T ss_pred             hHHHHHHHHHHHcCCEEEEc
Confidence            34456778888998776554

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=98.29  E-value=8.2e-07  Score=82.96  Aligned_cols=107  Identities=14%  Similarity=0.022  Sum_probs=73.1

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHH----HHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVA----RQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPD  337 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA----~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~  337 (478)
                      ..+||.||+|.|.++..|.+.. +.+|++||+++.+++.+    ++......-++++++++|+.++-             
T Consensus        28 ~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~-------------   94 (218)
T 3mq2_A           28 DDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLP-------------   94 (218)
T ss_dssp             SEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCC-------------
T ss_pred             CCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCC-------------
Confidence            4689999999999999998876 68999999999988853    22221122357999999987631             


Q ss_pred             CCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCC-CCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592          338 SFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDAR-NGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~-~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                       ..... |.|++........ ..+   +   -...+++.+++.|+|||.+++.+
T Consensus        95 -----------------~~~~~-d~v~~~~~~~~~~~~~~---~---~~~~~l~~~~~~LkpgG~l~~~~  140 (218)
T 3mq2_A           95 -----------------PLSGV-GELHVLMPWGSLLRGVL---G---SSPEMLRGMAAVCRPGASFLVAL  140 (218)
T ss_dssp             -----------------SCCCE-EEEEEESCCHHHHHHHH---T---SSSHHHHHHHHTEEEEEEEEEEE
T ss_pred             -----------------CCCCC-CEEEEEccchhhhhhhh---c---cHHHHHHHHHHHcCCCcEEEEEe
Confidence                             12334 7777533110000 000   0   01679999999999999999854

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=98.28  E-value=6.3e-07  Score=84.37  Aligned_cols=97  Identities=9%  Similarity=0.092  Sum_probs=70.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhh-CCCEEEEEECChHHHHHHHHhcCCCCCC-CeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQ-LDFEVVGVEMDEVVLRVARQYFGLEDGE-FLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~-~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~-rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      +.+||.||||.|.++..+... +..+++++|+|+.++++|++.+....-+ ++++  .|...-.                
T Consensus        50 ~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~----------------  111 (200)
T 3fzg_A           50 VSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDV----------------  111 (200)
T ss_dssp             CSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHH----------------
T ss_pred             CCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccC----------------
Confidence            679999999999999888776 4689999999999999999987532222 4444  6665432                


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCCh--HHHHHHHHHccCcCcEEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVR--KDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~--~efl~~~~~~L~~~Gilv~  404 (478)
                                     ....||+|+.  ++-          -++++  +..+..+.+.|+|+|+||.
T Consensus       112 ---------------~~~~~DvVLa--~k~----------LHlL~~~~~al~~v~~~L~pggvfIS  150 (200)
T 3fzg_A          112 ---------------YKGTYDVVFL--LKM----------LPVLKQQDVNILDFLQLFHTQNFVIS  150 (200)
T ss_dssp             ---------------TTSEEEEEEE--ETC----------HHHHHHTTCCHHHHHHTCEEEEEEEE
T ss_pred             ---------------CCCCcChhhH--hhH----------HHhhhhhHHHHHHHHHHhCCCCEEEE
Confidence                           4678999998  221          11121  1345589999999998873

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=98.27  E-value=1.3e-06  Score=91.77  Aligned_cols=103  Identities=12%  Similarity=-0.020  Sum_probs=74.7

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCC-CEEEEEECChHHHHHH-------HHhcCCCC--CCCeEEEEchHHH---HHHHHHh
Q 038592          263 RPKALCVGVGGGALVSFLRTQLD-FEVVGVEMDEVVLRVA-------RQYFGLED--GEFLQVSVGDAIE---FLEKLAR  329 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~-~~V~~VEiDp~Vl~vA-------~~~Fg~~~--d~rl~v~v~Dg~~---~l~~~~~  329 (478)
                      ..+||.||+|.|.++..+.+..+ .+|++||+++.+++.|       ++.+....  -.+++++.+|+..   .+..   
T Consensus       243 g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~~---  319 (433)
T 1u2z_A          243 GDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAE---  319 (433)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHH---
T ss_pred             CCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcccccccccc---
Confidence            56999999999999999988654 6899999999999999       76542111  2579999987652   1211   


Q ss_pred             hhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592          330 QIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                                ....||+|++...-       . .+   --..+|+.+.+.|+|||.+++-
T Consensus       320 --------------------------~~~~FDvIvvn~~l-------~-~~---d~~~~L~el~r~LKpGG~lVi~  358 (433)
T 1u2z_A          320 --------------------------LIPQCDVILVNNFL-------F-DE---DLNKKVEKILQTAKVGCKIISL  358 (433)
T ss_dssp             --------------------------HGGGCSEEEECCTT-------C-CH---HHHHHHHHHHTTCCTTCEEEES
T ss_pred             --------------------------ccCCCCEEEEeCcc-------c-cc---cHHHHHHHHHHhCCCCeEEEEe
Confidence                                      12469999983110       0 01   1256789999999999999873

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.25  E-value=2.2e-06  Score=92.78  Aligned_cols=65  Identities=18%  Similarity=0.236  Sum_probs=55.6

Q ss_pred             CCCCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHH
Q 038592          261 GFRPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEK  326 (478)
Q Consensus       261 g~~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~  326 (478)
                      +.|.|||.||||+|.++..|.+. +.+|++||+++..+++|+.+..-...-++++.++|+.++...
T Consensus        65 ~~~~~vLDvGCG~G~~~~~la~~-ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~  129 (569)
T 4azs_A           65 GRPLNVLDLGCAQGFFSLSLASK-GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAA  129 (569)
T ss_dssp             TSCCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHH
T ss_pred             CCCCeEEEECCCCcHHHHHHHhC-CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhh
Confidence            34789999999999999999875 889999999999999999997543334689999999998754

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.25  E-value=8.7e-07  Score=91.19  Aligned_cols=106  Identities=19%  Similarity=0.216  Sum_probs=75.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      +.+||.+|+|.|.++..+.++.  ..+|++||+|+.++++|         ++++++.+|..++.                
T Consensus        40 ~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------~~~~~~~~D~~~~~----------------   94 (421)
T 2ih2_A           40 GGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILADFLLWE----------------   94 (421)
T ss_dssp             TCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESCGGGCC----------------
T ss_pred             CCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------CCCcEEeCChhhcC----------------
Confidence            4599999999999998888763  57999999999999888         47899999988651                


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCC--CC--CCCC---------------CCChHHHHHHHHHccCcCcE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNG--TS--APPV---------------EFVRKDVLLAARLILSDFGI  401 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g--~s--~Pp~---------------~f~~~efl~~~~~~L~~~Gi  401 (478)
                                     ...+||+|+.+.-=......  +.  +++.               .=....|++.+.++|+++|.
T Consensus        95 ---------------~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~  159 (421)
T 2ih2_A           95 ---------------PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGV  159 (421)
T ss_dssp             ---------------CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEE
T ss_pred             ---------------ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCE
Confidence                           34679999995311100000  00  0000               00123789999999999999


Q ss_pred             EEEEeCC
Q 038592          402 FVMNVIP  408 (478)
Q Consensus       402 lv~N~~~  408 (478)
                      +++-+..
T Consensus       160 ~~~i~p~  166 (421)
T 2ih2_A          160 LVFVVPA  166 (421)
T ss_dssp             EEEEEEG
T ss_pred             EEEEECh
Confidence            9876644

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=98.24  E-value=2.8e-06  Score=83.43  Aligned_cols=105  Identities=11%  Similarity=0.086  Sum_probs=71.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.||+|+|.++..|.+. +.+|++||+++.+++.|++.+...   .+.....|.-.-+..                
T Consensus        46 g~~VLDlGcGtG~~a~~La~~-g~~V~gvD~S~~ml~~Ar~~~~~~---~v~~~~~~~~~~~~~----------------  105 (261)
T 3iv6_A           46 GSTVAVIGASTRFLIEKALER-GASVTVFDFSQRMCDDLAEALADR---CVTIDLLDITAEIPK----------------  105 (261)
T ss_dssp             TCEEEEECTTCHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTSSS---CCEEEECCTTSCCCG----------------
T ss_pred             cCEEEEEeCcchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhc---cceeeeeeccccccc----------------
Confidence            569999999999999988875 679999999999999999987532   233333332110000                


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIP  408 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~  408 (478)
                                  ....+||+|+++.--    ..+  ++.  -...+++.+.++| |||.+++.+..
T Consensus       106 ------------~~~~~fD~Vv~~~~l----~~~--~~~--~~~~~l~~l~~lL-PGG~l~lS~~~  150 (261)
T 3iv6_A          106 ------------ELAGHFDFVLNDRLI----NRF--TTE--EARRACLGMLSLV-GSGTVRASVKL  150 (261)
T ss_dssp             ------------GGTTCCSEEEEESCG----GGS--CHH--HHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred             ------------ccCCCccEEEEhhhh----HhC--CHH--HHHHHHHHHHHhC-cCcEEEEEecc
Confidence                        024579999996210    000  111  1256899999999 99999987643

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.23  E-value=3.5e-07  Score=87.40  Aligned_cols=111  Identities=15%  Similarity=0.091  Sum_probs=74.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCC-----------------------------CCe
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDG-----------------------------EFL  313 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d-----------------------------~rl  313 (478)
                      +.+||.||+|.|.++..+......+|+++|+++.+++.|++++.-...                             .++
T Consensus        57 ~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v  136 (265)
T 2i62_A           57 GELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRAI  136 (265)
T ss_dssp             EEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHHE
T ss_pred             CCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhhhh
Confidence            468999999999988777654334999999999999999998753210                             025


Q ss_pred             -EEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC-ChHHHHHH
Q 038592          314 -QVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF-VRKDVLLA  391 (478)
Q Consensus       314 -~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f-~~~efl~~  391 (478)
                       +++.+|..+....                          .+....+||+|+.-..       +.+-+..+ .-..+++.
T Consensus       137 ~~~~~~d~~~~~~~--------------------------~~~~~~~fD~v~~~~~-------l~~~~~~~~~~~~~l~~  183 (265)
T 2i62_A          137 KQVLKCDVTQSQPL--------------------------GGVSLPPADCLLSTLC-------LDAACPDLPAYRTALRN  183 (265)
T ss_dssp             EEEEECCTTSSSTT--------------------------TTCCCCCEEEEEEESC-------HHHHCSSHHHHHHHHHH
T ss_pred             eeEEEeeeccCCCC--------------------------CccccCCccEEEEhhh-------hhhhcCChHHHHHHHHH
Confidence             6777776543100                          0012267999998321       10001111 23678999


Q ss_pred             HHHccCcCcEEEEEe
Q 038592          392 ARLILSDFGIFVMNV  406 (478)
Q Consensus       392 ~~~~L~~~Gilv~N~  406 (478)
                      ++++|+|||.+++..
T Consensus       184 ~~~~LkpgG~li~~~  198 (265)
T 2i62_A          184 LGSLLKPGGFLVMVD  198 (265)
T ss_dssp             HHTTEEEEEEEEEEE
T ss_pred             HHhhCCCCcEEEEEe
Confidence            999999999998854

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.23  E-value=2.4e-06  Score=89.50  Aligned_cols=97  Identities=21%  Similarity=0.274  Sum_probs=75.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.+|+|.|.++..|.+. ..+|++||+++.+++.|++.+....-+ ++++.+|+.+++                  
T Consensus       291 ~~~VLDlgcG~G~~sl~la~~-~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~------------------  350 (425)
T 2jjq_A          291 GEKILDMYSGVGTFGIYLAKR-GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVS------------------  350 (425)
T ss_dssp             SSEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCC------------------
T ss_pred             CCEEEEeeccchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcC------------------
Confidence            469999999999999988875 569999999999999999876432223 899999988763                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                   .. +||+|++|.            |..=....+++.++. |+|+|++++..
T Consensus       351 -------------~~-~fD~Vv~dP------------Pr~g~~~~~~~~l~~-l~p~givyvsc  387 (425)
T 2jjq_A          351 -------------VK-GFDTVIVDP------------PRAGLHPRLVKRLNR-EKPGVIVYVSC  387 (425)
T ss_dssp             -------------CT-TCSEEEECC------------CTTCSCHHHHHHHHH-HCCSEEEEEES
T ss_pred             -------------cc-CCCEEEEcC------------CccchHHHHHHHHHh-cCCCcEEEEEC
Confidence                         12 799999963            222234668887764 99999988654

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=98.22  E-value=5e-07  Score=86.23  Aligned_cols=108  Identities=14%  Similarity=0.076  Sum_probs=73.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhh-CCCEEEEEECC-hHHHHHH---HHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQ-LDFEVVGVEMD-EVVLRVA---RQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPD  337 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~-~~~~V~~VEiD-p~Vl~vA---~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~  337 (478)
                      ..+||.||||+|.++..|.+. ++.+|++||++ +.|++.|   ++......-++++++.+|+.++- .           
T Consensus        25 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~-~-----------   92 (225)
T 3p2e_A           25 DRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLP-F-----------   92 (225)
T ss_dssp             SEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCC-G-----------
T ss_pred             CCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhh-h-----------
Confidence            468999999999999888864 47899999999 8888877   65443222357999999987651 1           


Q ss_pred             CCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          338 SFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                       .....+|.|.+.........     .......++|+.+++.|+|||.+++
T Consensus        93 -----------------~~~d~v~~i~~~~~~~~~~~-----~~~~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A           93 -----------------ELKNIADSISILFPWGTLLE-----YVIKPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             -----------------GGTTCEEEEEEESCCHHHHH-----HHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred             -----------------hccCeEEEEEEeCCCcHHhh-----hhhcchHHHHHHHHHhcCCCcEEEE
Confidence                             01245777776421100000     0001125789999999999999998

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=98.21  E-value=3.8e-06  Score=87.63  Aligned_cols=103  Identities=18%  Similarity=0.127  Sum_probs=75.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCC-EEEEEECChHHHHHHHHh----------cCCCCCCCeEEEEchHHHHHHHHHhhh
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDF-EVVGVEMDEVVLRVARQY----------FGLEDGEFLQVSVGDAIEFLEKLARQI  331 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~----------Fg~~~d~rl~v~v~Dg~~~l~~~~~~~  331 (478)
                      ..+||.||+|.|.++..+....+. +|++||+++.++++|++.          +|+. .++++++.+|..+.--..    
T Consensus       174 gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~-~~rVefi~GD~~~lp~~d----  248 (438)
T 3uwp_A          174 DDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKK-HAEYTLERGDFLSEEWRE----  248 (438)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBC-CCEEEEEECCTTSHHHHH----
T ss_pred             CCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCC-CCCeEEEECcccCCcccc----
Confidence            468999999999999888876655 699999999999999852          3442 358999999987752110    


Q ss_pred             cCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592          332 VGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                              .-..+|+|++...   ..     .|   --...|..+.+.|+|||.|++.
T Consensus       249 ------------------------~~~~aDVVf~Nn~---~F-----~p---dl~~aL~Ei~RvLKPGGrIVss  287 (438)
T 3uwp_A          249 ------------------------RIANTSVIFVNNF---AF-----GP---EVDHQLKERFANMKEGGRIVSS  287 (438)
T ss_dssp             ------------------------HHHTCSEEEECCT---TC-----CH---HHHHHHHHHHTTSCTTCEEEES
T ss_pred             ------------------------ccCCccEEEEccc---cc-----Cc---hHHHHHHHHHHcCCCCcEEEEe
Confidence                                    0125999998311   00     01   1256678889999999999973

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.20  E-value=9.4e-06  Score=81.46  Aligned_cols=135  Identities=12%  Similarity=0.105  Sum_probs=89.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.+|+|.|+.+..|....  ..+|+++|+++..++.+++.+....-.+++++.+|+.++....             
T Consensus       103 g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~-------------  169 (309)
T 2b9e_A          103 GSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSD-------------  169 (309)
T ss_dssp             TCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTC-------------
T ss_pred             CCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccc-------------
Confidence            4699999999999998888864  4799999999999999998763211246999999988752110             


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCC--C---------CCCC-----ChHHHHHHHHHccCcCcEEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSA--P---------PVEF-----VRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~--P---------p~~f-----~~~efl~~~~~~L~~~Gilv~  404 (478)
                                    ....+||.|++|+-.+..  |+.-  |         +..+     ++.++|..+.+.|+ +|.+++
T Consensus       170 --------------~~~~~fD~Vl~D~PcSg~--G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvY  232 (309)
T 2b9e_A          170 --------------PRYHEVHYILLDPSCSGS--GMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVY  232 (309)
T ss_dssp             --------------GGGTTEEEEEECCCCCC--------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEE
T ss_pred             --------------cccCCCCEEEEcCCcCCC--CCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEE
Confidence                          011469999999865321  2211  1         1111     23467888888887 999998


Q ss_pred             EeCCCCchHHHHHHHHHHHhcCc
Q 038592          405 NVIPPNRSFYDMLIQEFRDVFQE  427 (478)
Q Consensus       405 N~~~~~~~~~~~v~~~l~~vF~~  427 (478)
                      ...+-.++.-..++..+.+-++.
T Consensus       233 sTCs~~~~Ene~~v~~~l~~~~~  255 (309)
T 2b9e_A          233 STCSLCQEENEDVVRDALQQNPG  255 (309)
T ss_dssp             EESCCCGGGTHHHHHHHHTTSTT
T ss_pred             ECCCCChHHhHHHHHHHHHhCCC
Confidence            87766544444455555554554

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=98.20  E-value=4.3e-07  Score=87.18  Aligned_cols=60  Identities=13%  Similarity=0.287  Sum_probs=49.7

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHH
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIE  322 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~  322 (478)
                      +.+||.+|+|.|.++..+.... +.+|++||+++.+++.|++.+... ..++++++.+|+.+
T Consensus        66 ~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  127 (254)
T 2h00_A           66 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKT  127 (254)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTC
T ss_pred             CCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhh
Confidence            5699999999999887777664 689999999999999999876422 23579999999765

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=98.19  E-value=5.1e-06  Score=84.09  Aligned_cols=103  Identities=9%  Similarity=0.006  Sum_probs=75.9

Q ss_pred             CCCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          262 FRPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       262 ~~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      ...+||.||+|.|.++..+.+.. +.+++++|+ |.+++.|++.+.-. ..+|++++.+|..+.                
T Consensus       190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----------------  252 (359)
T 1x19_A          190 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE----------------  252 (359)
T ss_dssp             TCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTS----------------
T ss_pred             CCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccC----------------
Confidence            36799999999999998888875 689999999 99999999876321 245799999998753                


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                      .-..+|+|++.--       +..-+.. .-..+|+.+++.|+|||.+++.
T Consensus       253 ----------------~~~~~D~v~~~~v-------lh~~~d~-~~~~~l~~~~~~L~pgG~l~i~  294 (359)
T 1x19_A          253 ----------------SYPEADAVLFCRI-------LYSANEQ-LSTIMCKKAFDAMRSGGRLLIL  294 (359)
T ss_dssp             ----------------CCCCCSEEEEESC-------GGGSCHH-HHHHHHHHHHTTCCTTCEEEEE
T ss_pred             ----------------CCCCCCEEEEech-------hccCCHH-HHHHHHHHHHHhcCCCCEEEEE
Confidence                            1122499998310       1000110 1377899999999999999653

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=98.19  E-value=3.5e-06  Score=85.39  Aligned_cols=102  Identities=19%  Similarity=0.172  Sum_probs=77.1

Q ss_pred             CCCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          262 FRPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       262 ~~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      ...+||.||+|.|.++..+.+.. +.+++++|+ +.+++.|++.+.-. ..++++++.+|..+.+               
T Consensus       182 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------------  245 (374)
T 1qzz_A          182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPL---------------  245 (374)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC---------------
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcC---------------
Confidence            35799999999999999888875 689999999 99999999876321 2358999999986421               


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCCh---HHHHHHHHHccCcCcEEEEEeC
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVR---KDVLLAARLILSDFGIFVMNVI  407 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~---~efl~~~~~~L~~~Gilv~N~~  407 (478)
                                      + ..||+|++.--       +    .++-+   ..+|+.+++.|+|||.+++.-.
T Consensus       246 ----------------~-~~~D~v~~~~v-------l----~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          246 ----------------P-VTADVVLLSFV-------L----LNWSDEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             ----------------S-CCEEEEEEESC-------G----GGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ----------------C-CCCCEEEEecc-------c----cCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence                            2 23999998310       1    11222   3799999999999998876443

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.19  E-value=2.6e-06  Score=84.16  Aligned_cols=105  Identities=18%  Similarity=0.219  Sum_probs=70.2

Q ss_pred             CCeEEEEeCchhH----HHHHHHhh-C----CCEEEEEECChHHHHHHHHhcC-------C--------------CCC--
Q 038592          263 RPKALCVGVGGGA----LVSFLRTQ-L----DFEVVGVEMDEVVLRVARQYFG-------L--------------EDG--  310 (478)
Q Consensus       263 ~~~VLvIGlGgG~----L~~~L~~~-~----~~~V~~VEiDp~Vl~vA~~~Fg-------~--------------~~d--  310 (478)
                      +.+|+.+|||+|.    +++.|.+. .    +.+|+++|||+.+++.|++-.-       +              ..+  
T Consensus       106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~  185 (274)
T 1af7_A          106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL  185 (274)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred             CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence            4699999999997    78888776 3    2699999999999999987420       0              001  


Q ss_pred             --------CCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCC
Q 038592          311 --------EFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVE  382 (478)
Q Consensus       311 --------~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~  382 (478)
                              .++++...|..+.                             .-....+||+|++-  +  ..  +.-+++ 
T Consensus       186 ~~v~~~lr~~V~F~~~dl~~~-----------------------------~~~~~~~fDlI~cr--n--vl--iyf~~~-  229 (274)
T 1af7_A          186 VRVRQELANYVEFSSVNLLEK-----------------------------QYNVPGPFDAIFCR--N--VM--IYFDKT-  229 (274)
T ss_dssp             EEECHHHHTTEEEEECCTTCS-----------------------------SCCCCCCEEEEEEC--S--SG--GGSCHH-
T ss_pred             eeechhhcccCeEEecccCCC-----------------------------CCCcCCCeeEEEEC--C--ch--HhCCHH-
Confidence                    2455555554431                             00014579999991  1  10  000111 


Q ss_pred             CChHHHHHHHHHccCcCcEEEE
Q 038592          383 FVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       383 f~~~efl~~~~~~L~~~Gilv~  404 (478)
                       ....+++.+++.|+|||.|++
T Consensus       230 -~~~~vl~~~~~~L~pgG~L~l  250 (274)
T 1af7_A          230 -TQEDILRRFVPLLKPDGLLFA  250 (274)
T ss_dssp             -HHHHHHHHHGGGEEEEEEEEE
T ss_pred             -HHHHHHHHHHHHhCCCcEEEE
Confidence             236899999999999999997

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.18  E-value=2.5e-06  Score=85.81  Aligned_cols=102  Identities=12%  Similarity=0.092  Sum_probs=77.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCC-CCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGL-EDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~-~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      +.+||.||+|.|.++..+.+.. +.+++++|+ |.+++.|++++.- ...+|++++.+|..+.-.               
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------------  243 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARN---------------  243 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGG---------------
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcc---------------
Confidence            6799999999999998888765 689999999 8999999987642 224689999999765410               


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCC---hHHHHHHHHHccCcCcEEEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFV---RKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~---~~efl~~~~~~L~~~Gilv~N  405 (478)
                                    .....||+|++--    .   +    ..+-   ...+|+.+++.|+|||.+++.
T Consensus       244 --------------~~~~~~D~v~~~~----v---l----h~~~~~~~~~~l~~~~~~L~pgG~l~i~  286 (352)
T 3mcz_A          244 --------------FEGGAADVVMLND----C---L----HYFDAREAREVIGHAAGLVKPGGALLIL  286 (352)
T ss_dssp             --------------GTTCCEEEEEEES----C---G----GGSCHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             --------------cCCCCccEEEEec----c---c----ccCCHHHHHHHHHHHHHHcCCCCEEEEE
Confidence                          0234599999821    0   1    0111   268999999999999998874

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.18  E-value=1.1e-06  Score=85.92  Aligned_cols=44  Identities=9%  Similarity=0.030  Sum_probs=36.1

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcC
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFG  306 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg  306 (478)
                      +.+||.||+|.|.++..+......+|++||+++.+++.|++++.
T Consensus        72 ~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~  115 (289)
T 2g72_A           72 GRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQ  115 (289)
T ss_dssp             CSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHT
T ss_pred             CCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHh
Confidence            57999999999995544443345799999999999999999864

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=98.17  E-value=9e-06  Score=80.83  Aligned_cols=101  Identities=19%  Similarity=0.235  Sum_probs=75.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.||+|.|.++..+.+.. +.+++++|++ .+++.|++.+.-. ..++++++.+|..+.  .              
T Consensus       166 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~--------------  228 (335)
T 2r3s_A          166 PLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEV--D--------------  228 (335)
T ss_dssp             CSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTS--C--------------
T ss_pred             CCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccC--C--------------
Confidence            5799999999999999888875 6899999999 9999999876321 135799999997653  0              


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC---ChHHHHHHHHHccCcCcEEEEEe
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF---VRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f---~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                     ....||+|++--    .       ...+   ....+++.+++.|+|||.+++.-
T Consensus       229 ---------------~~~~~D~v~~~~----~-------l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e  271 (335)
T 2r3s_A          229 ---------------YGNDYDLVLLPN----F-------LHHFDVATCEQLLRKIKTALAVEGKVIVFD  271 (335)
T ss_dssp             ---------------CCSCEEEEEEES----C-------GGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ---------------CCCCCcEEEEcc----h-------hccCCHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence                           123499999821    0       0111   12589999999999999776643

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.17  E-value=3.8e-06  Score=78.65  Aligned_cols=96  Identities=23%  Similarity=0.282  Sum_probs=73.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      +.+||.||+|.|.++..+...     +++|+++.+++.|++.       +++++.+|+.++-                  
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~-------~~~~~~~d~~~~~------------------   97 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR-------GVFVLKGTAENLP------------------   97 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT-------TCEEEECBTTBCC------------------
T ss_pred             CCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc-------CCEEEEcccccCC------------------
Confidence            469999999999988877654     9999999999999987       5788888875430                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPN  410 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~  410 (478)
                                  ....+||+|++.-    ....+   +   -...+++.+++.|+|||.+++....+.
T Consensus        98 ------------~~~~~fD~v~~~~----~l~~~---~---~~~~~l~~~~~~L~pgG~l~i~~~~~~  143 (219)
T 1vlm_A           98 ------------LKDESFDFALMVT----TICFV---D---DPERALKEAYRILKKGGYLIVGIVDRE  143 (219)
T ss_dssp             ------------SCTTCEEEEEEES----CGGGS---S---CHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred             ------------CCCCCeeEEEEcc----hHhhc---c---CHHHHHHHHHHHcCCCcEEEEEEeCCc
Confidence                        1356799999842    10011   1   136899999999999999998776553

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.14  E-value=5.2e-06  Score=82.03  Aligned_cols=60  Identities=27%  Similarity=0.266  Sum_probs=51.1

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHH
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEF  323 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~  323 (478)
                      ..+||.||+|.|.++..|.+. ..+|++||+|+.+++.|++.+... ..++++++.+|+.++
T Consensus        29 ~~~VLDiG~G~G~lt~~L~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~   89 (285)
T 1zq9_A           29 TDVVLEVGPGTGNMTVKLLEK-AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT   89 (285)
T ss_dssp             TCEEEEECCTTSTTHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS
T ss_pred             CCEEEEEcCcccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecc
Confidence            468999999999999999876 569999999999999999887532 236899999999765

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.14  E-value=4.2e-06  Score=80.67  Aligned_cols=110  Identities=18%  Similarity=0.175  Sum_probs=76.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChH------HHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEV------VLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVG  333 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~------Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~  333 (478)
                      ..+||.||+|.|.++..+.+..  ..+|++||+++.      +++.|++.+... ..++++++.+|  ++....      
T Consensus        44 ~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d--~~~~~~------  115 (275)
T 3bkx_A           44 GEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNT--NLSDDL------  115 (275)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSC--CTTTCC------
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECC--hhhhcc------
Confidence            5699999999999999888874  389999999997      999999887432 23689999998  332110      


Q ss_pred             CCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          334 KNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                         .+....+||+|++.--    ...+   +.   ...+++.++.++++||.+++.....
T Consensus       116 -------------------~~~~~~~fD~v~~~~~----l~~~---~~---~~~~~~~~~~l~~~gG~l~~~~~~~  162 (275)
T 3bkx_A          116 -------------------GPIADQHFDRVVLAHS----LWYF---AS---ANALALLFKNMAAVCDHVDVAEWSM  162 (275)
T ss_dssp             -------------------GGGTTCCCSEEEEESC----GGGS---SC---HHHHHHHHHHHTTTCSEEEEEEECS
T ss_pred             -------------------CCCCCCCEEEEEEccc----hhhC---CC---HHHHHHHHHHHhCCCCEEEEEEecC
Confidence                               0013568999998421    0001   11   2447777788888899999865443

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.13  E-value=2.7e-06  Score=84.96  Aligned_cols=101  Identities=23%  Similarity=0.197  Sum_probs=75.7

Q ss_pred             CeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          264 PKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       264 ~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      .+||.||+|.|.++..+.+.. +.+++++|+ |.+++.|++.+.-. ..++++++.+|..+.                  
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------------------  229 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQE------------------  229 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTC------------------
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCC------------------
Confidence            799999999999998888875 689999999 99999999876311 136899999997641                  


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                    ....||+|++----.+    +  ++.  ....+++.+++.|+|||.+++.
T Consensus       230 --------------~~~~~D~v~~~~vl~~----~--~~~--~~~~~l~~~~~~L~pgG~l~i~  271 (334)
T 2ip2_A          230 --------------VPSNGDIYLLSRIIGD----L--DEA--ASLRLLGNCREAMAGDGRVVVI  271 (334)
T ss_dssp             --------------CCSSCSEEEEESCGGG----C--CHH--HHHHHHHHHHHHSCTTCEEEEE
T ss_pred             --------------CCCCCCEEEEchhccC----C--CHH--HHHHHHHHHHHhcCCCCEEEEE
Confidence                          1256999998311000    0  000  1248999999999999998875

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.11  E-value=5.1e-06  Score=83.79  Aligned_cols=100  Identities=22%  Similarity=0.257  Sum_probs=75.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.||+|.|.++..+.+.. +.+++++|+ +.+++.|++.+.-. ..++++++.+|..+.+                
T Consensus       184 ~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------------  246 (360)
T 1tw3_A          184 VRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL----------------  246 (360)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC----------------
T ss_pred             CcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCC----------------
Confidence            5799999999999998888775 689999999 99999999876321 2358999999986421                


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCCh---HHHHHHHHHccCcCcEEEEEe
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVR---KDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~---~efl~~~~~~L~~~Gilv~N~  406 (478)
                                     + ..||+|++.--       +    .++-.   ..+++.+++.|+|||.+++.-
T Consensus       247 ---------------~-~~~D~v~~~~v-------l----~~~~~~~~~~~l~~~~~~L~pgG~l~i~e  288 (360)
T 1tw3_A          247 ---------------P-RKADAIILSFV-------L----LNWPDHDAVRILTRCAEALEPGGRILIHE  288 (360)
T ss_dssp             ---------------S-SCEEEEEEESC-------G----GGSCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ---------------C-CCccEEEEccc-------c----cCCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence                           2 24999998310       0    01222   479999999999999888643

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=98.10  E-value=3.3e-06  Score=88.31  Aligned_cols=102  Identities=23%  Similarity=0.190  Sum_probs=75.6

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.+|+|.|.++..|.+. ..+|++||+++.+++.|++......-++++++.+|+.+++.+..              
T Consensus       287 ~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~--------------  351 (433)
T 1uwv_A          287 EDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQP--------------  351 (433)
T ss_dssp             TCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSG--------------
T ss_pred             CCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhh--------------
Confidence            469999999999999999876 67999999999999999987643222479999999987642200              


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                  ....+||+|++|            ||..-. .++++.+.. ++|++++.+.
T Consensus       352 ------------~~~~~fD~Vv~d------------PPr~g~-~~~~~~l~~-~~p~~ivyvs  388 (433)
T 1uwv_A          352 ------------WAKNGFDKVLLD------------PARAGA-AGVMQQIIK-LEPIRIVYVS  388 (433)
T ss_dssp             ------------GGTTCCSEEEEC------------CCTTCC-HHHHHHHHH-HCCSEEEEEE
T ss_pred             ------------hhcCCCCEEEEC------------CCCccH-HHHHHHHHh-cCCCeEEEEE
Confidence                        024579999996            233223 367776664 7888877653

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.09  E-value=3e-06  Score=85.63  Aligned_cols=112  Identities=18%  Similarity=0.180  Sum_probs=77.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-C-----CEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-D-----FEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNP  336 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~-----~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~  336 (478)
                      ..+||.+|+|+|.+...+.+.. .     .+|+++|+|+..+++|+..+.... -+++++.+|.++..            
T Consensus       131 ~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g-~~~~i~~~D~l~~~------------  197 (344)
T 2f8l_A          131 NVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR-QKMTLLHQDGLANL------------  197 (344)
T ss_dssp             EEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT-CCCEEEESCTTSCC------------
T ss_pred             CCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCC-CCceEEECCCCCcc------------
Confidence            4689999999999888777764 2     799999999999999998653211 15789999976421            


Q ss_pred             CCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCC-C----C--CCCCC-CCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592          337 DSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDA-R----N--GTSAP-PVEFVRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~-~----~--g~s~P-p~~f~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                         ...+||+|+.+..=+.. .    .  ....+ +.......|++.+.+.|+|||.+++-+
T Consensus       198 -------------------~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~  256 (344)
T 2f8l_A          198 -------------------LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLV  256 (344)
T ss_dssp             -------------------CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             -------------------ccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEE
Confidence                               34679999997420000 0    0  00000 111233479999999999999988766

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.08  E-value=1.2e-05  Score=82.15  Aligned_cols=63  Identities=17%  Similarity=0.126  Sum_probs=52.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHH
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEK  326 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~  326 (478)
                      ..+||.+|+|.|.++..|.+. ..+|++||+++.+++.|++......-++++++.+|+.+++..
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~  276 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQA  276 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHH
T ss_pred             CCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHH
Confidence            368999999999999988864 469999999999999999876432225799999999999865

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.08  E-value=2.2e-06  Score=88.39  Aligned_cols=102  Identities=18%  Similarity=0.217  Sum_probs=71.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.||+|.|.++..+.+. +.+|++||+++.+++.|++. +...  .......+..+.+..                
T Consensus       108 ~~~VLDiGcG~G~~~~~l~~~-g~~v~gvD~s~~~~~~a~~~-~~~~--~~~~~~~~~~~~l~~----------------  167 (416)
T 4e2x_A          108 DPFIVEIGCNDGIMLRTIQEA-GVRHLGFEPSSGVAAKAREK-GIRV--RTDFFEKATADDVRR----------------  167 (416)
T ss_dssp             SCEEEEETCTTTTTHHHHHHT-TCEEEEECCCHHHHHHHHTT-TCCE--ECSCCSHHHHHHHHH----------------
T ss_pred             CCEEEEecCCCCHHHHHHHHc-CCcEEEECCCHHHHHHHHHc-CCCc--ceeeechhhHhhccc----------------
Confidence            569999999999999888875 67999999999999999987 3221  111122233333321                


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVI  407 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~  407 (478)
                                   .+.+||+|+..-  .  ...+   +   --..+|+.+++.|+|||++++.+.
T Consensus       168 -------------~~~~fD~I~~~~--v--l~h~---~---d~~~~l~~~~r~LkpgG~l~i~~~  209 (416)
T 4e2x_A          168 -------------TEGPANVIYAAN--T--LCHI---P---YVQSVLEGVDALLAPDGVFVFEDP  209 (416)
T ss_dssp             -------------HHCCEEEEEEES--C--GGGC---T---THHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -------------CCCCEEEEEECC--h--HHhc---C---CHHHHHHHHHHHcCCCeEEEEEeC
Confidence                         246799999831  1  1011   1   247899999999999999998754

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.07  E-value=1.1e-06  Score=85.31  Aligned_cols=44  Identities=5%  Similarity=0.023  Sum_probs=35.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcC
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFG  306 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg  306 (478)
                      ..+||.||+|+|.++..+....-.+|+++|+++.+++.|+++..
T Consensus        56 g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~   99 (263)
T 2a14_A           56 GDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLK   99 (263)
T ss_dssp             EEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHH
T ss_pred             CceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHh
Confidence            46899999999987765443322379999999999999999864

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.06  E-value=2.3e-06  Score=85.35  Aligned_cols=99  Identities=15%  Similarity=0.063  Sum_probs=70.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.||+|+|.++..|.+....+|++||+++.|++.|.+.     ++++......-+.++..  .             
T Consensus        86 g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~-----~~rv~~~~~~ni~~l~~--~-------------  145 (291)
T 3hp7_A           86 DMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQ-----DDRVRSMEQYNFRYAEP--V-------------  145 (291)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHT-----CTTEEEECSCCGGGCCG--G-------------
T ss_pred             ccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-----CcccceecccCceecch--h-------------
Confidence            469999999999999988877456999999999999996553     45665443322223211  0             


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                 .-+...||+|++|+--.           .  -..+|..+++.|+|||.+++=
T Consensus       146 -----------~l~~~~fD~v~~d~sf~-----------s--l~~vL~e~~rvLkpGG~lv~l  184 (291)
T 3hp7_A          146 -----------DFTEGLPSFASIDVSFI-----------S--LNLILPALAKILVDGGQVVAL  184 (291)
T ss_dssp             -----------GCTTCCCSEEEECCSSS-----------C--GGGTHHHHHHHSCTTCEEEEE
T ss_pred             -----------hCCCCCCCEEEEEeeHh-----------h--HHHHHHHHHHHcCcCCEEEEE
Confidence                       01234599999975210           1  166899999999999999874

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=98.03  E-value=9.5e-06  Score=83.17  Aligned_cols=106  Identities=16%  Similarity=0.070  Sum_probs=74.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCC-CEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQLD-FEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.+|+|+|.++..+..... .+|+++|+|+.+++.|++.+... .+++++++.+|+.++-                
T Consensus       218 ~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~----------------  281 (373)
T 3tm4_A          218 GGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLS----------------  281 (373)
T ss_dssp             SCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGG----------------
T ss_pred             CCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCC----------------
Confidence            46899999999999998887753 59999999999999999876322 1357999999998762                


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC--ChHHHHHHHHHccCcCcEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF--VRKDVLLAARLILSDFGIFV  403 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f--~~~efl~~~~~~L~~~Gilv  403 (478)
                                    ....+||+|++|..=+... +   ....+  +-.++++.+++.| .+++++
T Consensus       282 --------------~~~~~fD~Ii~npPyg~r~-~---~~~~~~~ly~~~~~~l~r~l-~g~~~~  327 (373)
T 3tm4_A          282 --------------QYVDSVDFAISNLPYGLKI-G---KKSMIPDLYMKFFNELAKVL-EKRGVF  327 (373)
T ss_dssp             --------------GTCSCEEEEEEECCCC----------CCHHHHHHHHHHHHHHHE-EEEEEE
T ss_pred             --------------cccCCcCEEEECCCCCccc-C---cchhHHHHHHHHHHHHHHHc-CCeEEE
Confidence                          1346799999974211100 0   00111  1267889999989 434333

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=98.03  E-value=1.5e-05  Score=89.12  Aligned_cols=102  Identities=13%  Similarity=0.111  Sum_probs=76.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCC--CEEEEEECChHHHHHHHHhcCC------CCCCCeEEEEchHHHHHHHHHhhhcCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQLD--FEVVGVEMDEVVLRVARQYFGL------EDGEFLQVSVGDAIEFLEKLARQIVGK  334 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~--~~V~~VEiDp~Vl~vA~~~Fg~------~~d~rl~v~v~Dg~~~l~~~~~~~~~~  334 (478)
                      +.+||.||+|.|.++..|.+..+  .+|++||+++.+++.|++.+..      ...++++++++|+.++-          
T Consensus       722 g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp----------  791 (950)
T 3htx_A          722 ASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFD----------  791 (950)
T ss_dssp             CSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCC----------
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCC----------
Confidence            57999999999999999988753  6999999999999999884320      12257999999987641          


Q ss_pred             CCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCCh---HHHHHHHHHccCcCcEEEEEe
Q 038592          335 NPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVR---KDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~---~efl~~~~~~L~~~Gilv~N~  406 (478)
                                          .....||+|++.-    .       -.++..   ..+++.+++.|+|| .+++.+
T Consensus       792 --------------------~~d~sFDlVV~~e----V-------LeHL~dp~l~~~L~eI~RvLKPG-~LIIST  834 (950)
T 3htx_A          792 --------------------SRLHDVDIGTCLE----V-------IEHMEEDQACEFGEKVLSLFHPK-LLIVST  834 (950)
T ss_dssp             --------------------TTSCSCCEEEEES----C-------GGGSCHHHHHHHHHHHHHTTCCS-EEEEEE
T ss_pred             --------------------cccCCeeEEEEeC----c-------hhhCChHHHHHHHHHHHHHcCCC-EEEEEe
Confidence                                1456799999931    1       122333   34899999999998 666544

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.00  E-value=4.7e-06  Score=82.98  Aligned_cols=60  Identities=25%  Similarity=0.295  Sum_probs=46.1

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHH
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEF  323 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~  323 (478)
                      ..+||.||+|.|.++..|.+. +.+|++||+|+.+++.|++.+.....++++++.+|+.++
T Consensus        43 ~~~VLDiG~G~G~lt~~La~~-~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~  102 (299)
T 2h1r_A           43 SDIVLEIGCGTGNLTVKLLPL-AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKT  102 (299)
T ss_dssp             TCEEEEECCTTSTTHHHHTTT-SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSS
T ss_pred             cCEEEEEcCcCcHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhC
Confidence            469999999999999988875 579999999999999999876321225799999998754

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=97.98  E-value=5.1e-06  Score=84.86  Aligned_cols=95  Identities=18%  Similarity=0.213  Sum_probs=70.1

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||+|.|.++..|.+.. +.+++++|+ |.|++.|+++      ++++++.+|..+-                  
T Consensus       204 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~------------------  258 (368)
T 3reo_A          204 LTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF------SGVEHLGGDMFDG------------------  258 (368)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC------TTEEEEECCTTTC------------------
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc------CCCEEEecCCCCC------------------
Confidence            5799999999999998888764 789999999 9999888643      6899999997641                  


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                   .+..  |+|++---       +..-+.. .-..+|+++++.|+|||.+++.
T Consensus       259 -------------~p~~--D~v~~~~v-------lh~~~~~-~~~~~l~~~~~~L~pgG~l~i~  299 (368)
T 3reo_A          259 -------------VPKG--DAIFIKWI-------CHDWSDE-HCLKLLKNCYAALPDHGKVIVA  299 (368)
T ss_dssp             -------------CCCC--SEEEEESC-------GGGBCHH-HHHHHHHHHHHHSCTTCEEEEE
T ss_pred             -------------CCCC--CEEEEech-------hhcCCHH-HHHHHHHHHHHHcCCCCEEEEE
Confidence                         1222  99988310       0000000 1247899999999999988774

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=97.98  E-value=3.6e-05  Score=76.67  Aligned_cols=132  Identities=16%  Similarity=0.210  Sum_probs=85.0

Q ss_pred             CCeEEEEeCc------hhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEE-EEchHHHHHHHHHhhhcC
Q 038592          263 RPKALCVGVG------GGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQV-SVGDAIEFLEKLARQIVG  333 (478)
Q Consensus       263 ~~~VLvIGlG------gG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v-~v~Dg~~~l~~~~~~~~~  333 (478)
                      ..+||.+|+|      .|+  ..+.+..  +.+|++||++|.          +   +++++ +.+|+.+.-         
T Consensus        64 g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~----------v---~~v~~~i~gD~~~~~---------  119 (290)
T 2xyq_A           64 NMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF----------V---SDADSTLIGDCATVH---------  119 (290)
T ss_dssp             TCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC----------B---CSSSEEEESCGGGCC---------
T ss_pred             CCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC----------C---CCCEEEEECccccCC---------
Confidence            4699999994      477  3444443  479999999998          1   36788 999986531         


Q ss_pred             CCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCC--C--CCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          334 KNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAP--P--VEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~P--p--~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                            ...+||+|+.|.....  .|....  .  ..+ -..+++.+++.|+|||.|++-+...
T Consensus       120 ----------------------~~~~fD~Vvsn~~~~~--~g~~~~d~~~~~~l-~~~~l~~a~r~LkpGG~~v~~~~~~  174 (290)
T 2xyq_A          120 ----------------------TANKWDLIISDMYDPR--TKHVTKENDSKEGF-FTYLCGFIKQKLALGGSIAVKITEH  174 (290)
T ss_dssp             ----------------------CSSCEEEEEECCCCCC-----CCSCCCCCCTH-HHHHHHHHHHHEEEEEEEEEEECSS
T ss_pred             ----------------------ccCcccEEEEcCCccc--cccccccccchHHH-HHHHHHHHHHhcCCCcEEEEEEecc
Confidence                                  2357999999864221  111100  0  112 2578999999999999999977554


Q ss_pred             CchHHHHHHHHHHHh-cCccEEEee-cccceEEEEEEc
Q 038592          410 NRSFYDMLIQEFRDV-FQELYEIDV-GNEENFVLIATG  445 (478)
Q Consensus       410 ~~~~~~~v~~~l~~v-F~~v~~~~v-~~~~N~Vl~a~~  445 (478)
                      ..  .+.+...+++. |..+..... .+....+++|..
T Consensus       175 ~~--~~~l~~~l~~~GF~~v~~~asr~~s~e~~lv~~~  210 (290)
T 2xyq_A          175 SW--NADLYKLMGHFSWWTAFVTNVNASSSEAFLIGAN  210 (290)
T ss_dssp             SC--CHHHHHHHTTEEEEEEEEEGGGTTSSCEEEEEEE
T ss_pred             CC--HHHHHHHHHHcCCcEEEEEEcCCCchheEEecCC
Confidence            22  13566677777 766554422 233456677754

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=97.97  E-value=9.7e-06  Score=80.50  Aligned_cols=123  Identities=19%  Similarity=0.107  Sum_probs=86.4

Q ss_pred             CCCeEEEEeCchhHHHHHHHhhC------CCEEEEEECCh--------------------------HHHHHHHHhcCCC-
Q 038592          262 FRPKALCVGVGGGALVSFLRTQL------DFEVVGVEMDE--------------------------VVLRVARQYFGLE-  308 (478)
Q Consensus       262 ~~~~VLvIGlGgG~L~~~L~~~~------~~~V~~VEiDp--------------------------~Vl~vA~~~Fg~~-  308 (478)
                      .|.+||.+|+..|..+.+++..+      +.+|+++|..+                          ..++.|+++|.-. 
T Consensus       106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g  185 (282)
T 2wk1_A          106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD  185 (282)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred             CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence            47899999999998887776542      56899999642                          1466778776421 


Q ss_pred             -CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHH
Q 038592          309 -DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKD  387 (478)
Q Consensus       309 -~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~e  387 (478)
                       .+++++++.||+.+.+.+                            ....+||+|++|++...            ....
T Consensus       186 l~~~~I~li~Gda~etL~~----------------------------~~~~~~d~vfIDaD~y~------------~~~~  225 (282)
T 2wk1_A          186 LLDEQVRFLPGWFKDTLPT----------------------------APIDTLAVLRMDGDLYE------------STWD  225 (282)
T ss_dssp             CCSTTEEEEESCHHHHSTT----------------------------CCCCCEEEEEECCCSHH------------HHHH
T ss_pred             CCcCceEEEEeCHHHHHhh----------------------------CCCCCEEEEEEcCCccc------------cHHH
Confidence             147899999999988744                            13467999999975311            2468


Q ss_pred             HHHHHHHccCcCcEEEE-EeCCCCchHHHHHHHHHHHhcC
Q 038592          388 VLLAARLILSDFGIFVM-NVIPPNRSFYDMLIQEFRDVFQ  426 (478)
Q Consensus       388 fl~~~~~~L~~~Gilv~-N~~~~~~~~~~~v~~~l~~vF~  426 (478)
                      +|+.+..+|++||++++ |+. -.+.. ...++.+.+..+
T Consensus       226 ~Le~~~p~L~pGGiIv~DD~~-~~~G~-~~Av~Ef~~~~~  263 (282)
T 2wk1_A          226 TLTNLYPKVSVGGYVIVDDYM-MCPPC-KDAVDEYRAKFD  263 (282)
T ss_dssp             HHHHHGGGEEEEEEEEESSCT-TCHHH-HHHHHHHHHHTT
T ss_pred             HHHHHHhhcCCCEEEEEcCCC-CCHHH-HHHHHHHHHhcC
Confidence            99999999999999998 652 22332 333444444444

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=97.97  E-value=1.1e-05  Score=80.55  Aligned_cols=58  Identities=22%  Similarity=0.256  Sum_probs=51.7

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHH
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEF  323 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~  323 (478)
                      ..+||.||+|.|.++..|.+. ..+|++||+|+.+++.|++.+.  ..++++++.+|+.++
T Consensus        51 ~~~VLEIG~G~G~lT~~La~~-~~~V~aVEid~~li~~a~~~~~--~~~~v~vi~gD~l~~  108 (295)
T 3gru_A           51 DDVVLEIGLGKGILTEELAKN-AKKVYVIEIDKSLEPYANKLKE--LYNNIEIIWGDALKV  108 (295)
T ss_dssp             TCEEEEECCTTSHHHHHHHHH-SSEEEEEESCGGGHHHHHHHHH--HCSSEEEEESCTTTS
T ss_pred             cCEEEEECCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhc--cCCCeEEEECchhhC
Confidence            469999999999999999887 6799999999999999998875  346899999999875

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=97.96  E-value=2.8e-05  Score=76.97  Aligned_cols=122  Identities=13%  Similarity=0.067  Sum_probs=76.6

Q ss_pred             CCeEEEEeCch---hHHHHHHHhh-CCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCC
Q 038592          263 RPKALCVGVGG---GALVSFLRTQ-LDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDS  338 (478)
Q Consensus       263 ~~~VLvIGlGg---G~L~~~L~~~-~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~  338 (478)
                      ..++|.||+|.   |.+...+++. ++.+|++||.||.|++.|+..+.-....+++++.+|..+.-.-+....   ...+
T Consensus        79 ~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~---~~~~  155 (277)
T 3giw_A           79 IRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPE---LRDT  155 (277)
T ss_dssp             CCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHH---HHTT
T ss_pred             CCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccc---cccc
Confidence            46899999995   5555545544 578999999999999999998763333579999999987621100000   0000


Q ss_pred             CCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCC
Q 038592          339 FGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPN  410 (478)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~  410 (478)
                      ++               .+..+++++.-+        +..-|..-.-...++.+++.|+|||.|++...+.+
T Consensus       156 ~D---------------~~~p~av~~~av--------LH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d  204 (277)
T 3giw_A          156 LD---------------LTRPVALTVIAI--------VHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAE  204 (277)
T ss_dssp             CC---------------TTSCCEEEEESC--------GGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCT
T ss_pred             cC---------------cCCcchHHhhhh--------HhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence            11               123344444311        11011110114799999999999999999776653

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=97.95  E-value=2.7e-05  Score=72.25  Aligned_cols=123  Identities=17%  Similarity=0.148  Sum_probs=79.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.||+|.|.++..+    ..+|++||+++.               +++++.+|+.+.                   
T Consensus        68 ~~~vLDiG~G~G~~~~~l----~~~v~~~D~s~~---------------~~~~~~~d~~~~-------------------  109 (215)
T 2zfu_A           68 SLVVADFGCGDCRLASSI----RNPVHCFDLASL---------------DPRVTVCDMAQV-------------------  109 (215)
T ss_dssp             TSCEEEETCTTCHHHHHC----CSCEEEEESSCS---------------STTEEESCTTSC-------------------
T ss_pred             CCeEEEECCcCCHHHHHh----hccEEEEeCCCC---------------CceEEEeccccC-------------------
Confidence            579999999999988765    479999999998               356777776542                   


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHHH
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEFR  422 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l~  422 (478)
                                 +....+||+|++...       +.    .-....+++.+++.|+|||.+++............+.+.++
T Consensus       110 -----------~~~~~~fD~v~~~~~-------l~----~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~  167 (215)
T 2zfu_A          110 -----------PLEDESVDVAVFCLS-------LM----GTNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVT  167 (215)
T ss_dssp             -----------SCCTTCEEEEEEESC-------CC----SSCHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHH
T ss_pred             -----------CCCCCCEeEEEEehh-------cc----ccCHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHH
Confidence                       014567999998321       11    01347899999999999999998554332112344555565


Q ss_pred             Hh-cCccEEEeecccceEEEEEEcC
Q 038592          423 DV-FQELYEIDVGNEENFVLIATGL  446 (478)
Q Consensus       423 ~v-F~~v~~~~v~~~~N~Vl~a~~~  446 (478)
                      +. |..+. .......-.++++.+.
T Consensus       168 ~~Gf~~~~-~~~~~~~~~~~~~~k~  191 (215)
T 2zfu_A          168 KLGFKIVS-KDLTNSHFFLFDFQKT  191 (215)
T ss_dssp             HTTEEEEE-EECCSTTCEEEEEEEC
T ss_pred             HCCCEEEE-EecCCCeEEEEEEEec
Confidence            54 54333 2323333355555544

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=97.95  E-value=1.7e-05  Score=82.66  Aligned_cols=145  Identities=18%  Similarity=0.141  Sum_probs=90.6

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC--CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE--DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~--~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.+|+|.|..+.++.+. +.+|++||+|+.++++|++.+...  .-++++++.+|+.+++...             
T Consensus        94 g~~VLDLgcG~G~~al~LA~~-g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~-------------  159 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSK-ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLI-------------  159 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHH-------------
T ss_pred             CCEEEEeCCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhc-------------
Confidence            469999999999999888765 579999999999999999876321  1157999999999987642             


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCC-CCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHH
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNG-TSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQ  419 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g-~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~  419 (478)
                                     ...+||+|++|-.-....+| +..+ + -+++.+......++.....+++-+ ++.-++ ...+ 
T Consensus       160 ---------------~~~~fDvV~lDPPrr~~~~grv~~l-e-d~~P~l~~~~~~l~~~~~~~~vK~-sP~ld~-~~~~-  219 (410)
T 3ll7_A          160 ---------------KTFHPDYIYVDPARRSGADKRVYAI-A-DCEPDLIPLATELLPFCSSILAKL-SPMIDL-WDTL-  219 (410)
T ss_dssp             ---------------HHHCCSEEEECCEEC-----CCCCG-G-GEESCHHHHHHHHGGGSSEEEEEE-CTTSCH-HHHH-
T ss_pred             ---------------cCCCceEEEECCCCcCCCCceEEeh-h-hcCCCHHHHHHHHHhhCCcEEEEc-CCCCCh-HHHH-
Confidence                           12469999998532221111 1111 1 123444444444444445566655 343332 1122 


Q ss_pred             HHHHhcC---ccEEEeecccceEEEEEE
Q 038592          420 EFRDVFQ---ELYEIDVGNEENFVLIAT  444 (478)
Q Consensus       420 ~l~~vF~---~v~~~~v~~~~N~Vl~a~  444 (478)
                        + .++   ++..+.+.++..+.++-+
T Consensus       220 --~-~l~~~~ev~~vSv~ge~kE~~l~~  244 (410)
T 3ll7_A          220 --Q-SLLHVQELHVVAAHGEVKELLVRM  244 (410)
T ss_dssp             --H-HCSSEEEEEEEEETTEEEEEEEEE
T ss_pred             --h-hCCCCcEEEEEEeCCeEEEEEEEe
Confidence              2 234   356666777788866654

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=97.94  E-value=2e-05  Score=77.78  Aligned_cols=55  Identities=27%  Similarity=0.306  Sum_probs=50.4

Q ss_pred             eEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHH
Q 038592          265 KALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEF  323 (478)
Q Consensus       265 ~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~  323 (478)
                      +||.||+|.|.++..|.+. +.+|++||+|+.+++.+++.+.   +.+++++.+|+.++
T Consensus        49 ~VLEIG~G~G~lt~~L~~~-~~~V~avEid~~~~~~l~~~~~---~~~v~vi~~D~l~~  103 (271)
T 3fut_A           49 PVFEVGPGLGALTRALLEA-GAEVTAIEKDLRLRPVLEETLS---GLPVRLVFQDALLY  103 (271)
T ss_dssp             CEEEECCTTSHHHHHHHHT-TCCEEEEESCGGGHHHHHHHTT---TSSEEEEESCGGGS
T ss_pred             eEEEEeCchHHHHHHHHHc-CCEEEEEECCHHHHHHHHHhcC---CCCEEEEECChhhC
Confidence            9999999999999999886 4799999999999999999886   36899999999876

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=97.93  E-value=8.5e-06  Score=82.99  Aligned_cols=92  Identities=14%  Similarity=0.161  Sum_probs=71.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||+|.|.++..+.+.. +.+++++|+ |.+++.|+++      ++++++.+|..+-                  
T Consensus       210 ~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~------------------  264 (372)
T 1fp1_D          210 ISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL------SGIEHVGGDMFAS------------------  264 (372)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC------TTEEEEECCTTTC------------------
T ss_pred             CCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc------CCCEEEeCCcccC------------------
Confidence            5799999999999998888875 689999999 9999988763      5699999998641                  


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCCh---HHHHHHHHHccCcCcEEEEE
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVR---KDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~---~efl~~~~~~L~~~Gilv~N  405 (478)
                                   .+.  ||+|++--    .   +    .++-+   ..+|+.+++.|+|||.+++.
T Consensus       265 -------------~~~--~D~v~~~~----~---l----h~~~d~~~~~~l~~~~~~L~pgG~l~i~  305 (372)
T 1fp1_D          265 -------------VPQ--GDAMILKA----V---C----HNWSDEKCIEFLSNCHKALSPNGKVIIV  305 (372)
T ss_dssp             -------------CCC--EEEEEEES----S---G----GGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -------------CCC--CCEEEEec----c---c----ccCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence                         022  99999831    0   1    01122   38999999999999988874

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=97.93  E-value=1.1e-05  Score=81.47  Aligned_cols=97  Identities=16%  Similarity=0.166  Sum_probs=70.1

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCC-CCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGL-EDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~-~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.||+|.|.++..+.+.. +.+++++|+ +.++.  ++.... ...+|++++.+|..+.                 
T Consensus       185 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~~-----------------  244 (348)
T 3lst_A          185 TGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLRE-----------------  244 (348)
T ss_dssp             SEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTTC-----------------
T ss_pred             CceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCCC-----------------
Confidence            5799999999999998888765 689999999 55555  333321 1246899999998621                 


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCCh---HHHHHHHHHccCcCcEEEEEe
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVR---KDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~---~efl~~~~~~L~~~Gilv~N~  406 (478)
                                     .. .||+|++--    .   +    .++-+   ..+|+++++.|+|||.+++.-
T Consensus       245 ---------------~p-~~D~v~~~~----v---l----h~~~d~~~~~~L~~~~~~LkpgG~l~i~e  286 (348)
T 3lst_A          245 ---------------VP-HADVHVLKR----I---L----HNWGDEDSVRILTNCRRVMPAHGRVLVID  286 (348)
T ss_dssp             ---------------CC-CCSEEEEES----C---G----GGSCHHHHHHHHHHHHHTCCTTCEEEEEE
T ss_pred             ---------------CC-CCcEEEEeh----h---c----cCCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence                           12 799999821    0   1    01122   489999999999999998743

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=97.91  E-value=6.1e-06  Score=79.29  Aligned_cols=100  Identities=13%  Similarity=0.037  Sum_probs=69.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.||+|+|.++..|.+....+|++||+++.+++.|++.     ++++.+....-+.++..  .             
T Consensus        38 g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~-----~~~~~~~~~~~~~~~~~--~-------------   97 (232)
T 3opn_A           38 GKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRS-----DERVVVMEQFNFRNAVL--A-------------   97 (232)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHT-----CTTEEEECSCCGGGCCG--G-------------
T ss_pred             CCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHh-----CccccccccceEEEeCH--h-------------
Confidence            469999999999999988887335999999999999998875     24444433322333210  0             


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                 ......||.+.+|+--       ++    +  ..+|..+++.|+|||.+++-+
T Consensus        98 -----------~~~~~~~d~~~~D~v~-------~~----l--~~~l~~i~rvLkpgG~lv~~~  137 (232)
T 3opn_A           98 -----------DFEQGRPSFTSIDVSF-------IS----L--DLILPPLYEILEKNGEVAALI  137 (232)
T ss_dssp             -----------GCCSCCCSEEEECCSS-------SC----G--GGTHHHHHHHSCTTCEEEEEE
T ss_pred             -----------HcCcCCCCEEEEEEEh-------hh----H--HHHHHHHHHhccCCCEEEEEE
Confidence                       0122236777776521       11    1  679999999999999998853

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=97.90  E-value=8.2e-06  Score=83.24  Aligned_cols=95  Identities=19%  Similarity=0.140  Sum_probs=70.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||+|.|.++..|.+.. +.+++++|+ |.|++.|+++      ++++++.+|..+-                  
T Consensus       202 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~------------------  256 (364)
T 3p9c_A          202 LGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF------PGVTHVGGDMFKE------------------  256 (364)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC------TTEEEEECCTTTC------------------
T ss_pred             CCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc------CCeEEEeCCcCCC------------------
Confidence            5799999999999998888764 789999999 9999888653      6899999997641                  


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                   .+..  |+|++---       +..-+.. .-..+|+++++.|+|||.+++.
T Consensus       257 -------------~p~~--D~v~~~~v-------lh~~~d~-~~~~~L~~~~~~L~pgG~l~i~  297 (364)
T 3p9c_A          257 -------------VPSG--DTILMKWI-------LHDWSDQ-HCATLLKNCYDALPAHGKVVLV  297 (364)
T ss_dssp             -------------CCCC--SEEEEESC-------GGGSCHH-HHHHHHHHHHHHSCTTCEEEEE
T ss_pred             -------------CCCC--CEEEehHH-------hccCCHH-HHHHHHHHHHHHcCCCCEEEEE
Confidence                         1222  99988210       1000100 1247899999999999988774

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=97.89  E-value=4.8e-05  Score=77.95  Aligned_cols=131  Identities=15%  Similarity=0.122  Sum_probs=90.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhc---CCC---CCCCeEEEEchHHHHHHHHHhhhcCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYF---GLE---DGEFLQVSVGDAIEFLEKLARQIVGKN  335 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~F---g~~---~d~rl~v~v~Dg~~~l~~~~~~~~~~~  335 (478)
                      ..+||.+..|-|+=+..|.+.. +..|+++|+++.-++..++.+   +..   ...++++...|+..+-..         
T Consensus       149 g~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~---------  219 (359)
T 4fzv_A          149 GDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGEL---------  219 (359)
T ss_dssp             TEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHH---------
T ss_pred             CCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchh---------
Confidence            4589999999998777777765 358999999999887776543   332   235799999999988543         


Q ss_pred             CCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCC-CCCC-------------ChHHHHHHHHHccCcCcE
Q 038592          336 PDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAP-PVEF-------------VRKDVLLAARLILSDFGI  401 (478)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~P-p~~f-------------~~~efl~~~~~~L~~~Gi  401 (478)
                                          ....||.|++|+-.+..-.|+.-+ |...             ++.+.|.++.+.|+|||.
T Consensus       220 --------------------~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~  279 (359)
T 4fzv_A          220 --------------------EGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGH  279 (359)
T ss_dssp             --------------------STTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEE
T ss_pred             --------------------ccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcE
Confidence                                456899999999765310122222 2211             356788999999999999


Q ss_pred             EEEEeCCCCchHHHHHHHHHH
Q 038592          402 FVMNVIPPNRSFYDMLIQEFR  422 (478)
Q Consensus       402 lv~N~~~~~~~~~~~v~~~l~  422 (478)
                      +|.-+.+-+++--+.+++.+-
T Consensus       280 LVYsTCSl~~~ENE~vV~~~L  300 (359)
T 4fzv_A          280 VVYSTCSLSHLQNEYVVQGAI  300 (359)
T ss_dssp             EEEEESCCCTTTTHHHHHHHH
T ss_pred             EEEEeCCCchhhCHHHHHHHH
Confidence            998776654433333444333

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=97.84  E-value=0.00016  Score=72.55  Aligned_cols=144  Identities=19%  Similarity=0.183  Sum_probs=89.3

Q ss_pred             CCeEEEEeCchhHHHH----HHHh-hCCC--EEEEEECChH---------HHHHHHHhcC-CC--CCC--CeEEEEchHH
Q 038592          263 RPKALCVGVGGGALVS----FLRT-QLDF--EVVGVEMDEV---------VLRVARQYFG-LE--DGE--FLQVSVGDAI  321 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~----~L~~-~~~~--~V~~VEiDp~---------Vl~vA~~~Fg-~~--~d~--rl~v~v~Dg~  321 (478)
                      ..+||.+|.|+|.-..    .+.+ .+..  +.+.+|.+|.         .-++++..+. .+  .++  .++++.+|+.
T Consensus        97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~  176 (308)
T 3vyw_A           97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDAR  176 (308)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHH
T ss_pred             CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHH
Confidence            4689999999996321    1222 2444  4455665431         2222222211 11  233  4578899999


Q ss_pred             HHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcE
Q 038592          322 EFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGI  401 (478)
Q Consensus       322 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gi  401 (478)
                      +.+.++                            ...++|+|++|.|++..       .+++.+.++|+.++++++|||+
T Consensus       177 ~~l~~l----------------------------~~~~~Da~flDgFsP~k-------NPeLWs~e~f~~l~~~~~pgg~  221 (308)
T 3vyw_A          177 KRIKEV----------------------------ENFKADAVFHDAFSPYK-------NPELWTLDFLSLIKERIDEKGY  221 (308)
T ss_dssp             HHGGGC----------------------------CSCCEEEEEECCSCTTT-------SGGGGSHHHHHHHHTTEEEEEE
T ss_pred             HHHhhh----------------------------cccceeEEEeCCCCccc-------CcccCCHHHHHHHHHHhCCCcE
Confidence            998652                            34579999999998754       2468999999999999999999


Q ss_pred             EEEEeCCCCchHHHHHHHHHHHh-cCccEEEeecccceEEEEEEcCCC
Q 038592          402 FVMNVIPPNRSFYDMLIQEFRDV-FQELYEIDVGNEENFVLIATGLSI  448 (478)
Q Consensus       402 lv~N~~~~~~~~~~~v~~~l~~v-F~~v~~~~v~~~~N~Vl~a~~~~~  448 (478)
                      |+.  .+....    |-+.|+++ |. |...+-....-..++|+..+.
T Consensus       222 laT--Ytaag~----VRR~L~~aGF~-V~k~~G~g~KReml~A~~~~~  262 (308)
T 3vyw_A          222 WVS--YSSSLS----VRKSLLTLGFK-VGSSREIGRKRKGTVASLKAP  262 (308)
T ss_dssp             EEE--SCCCHH----HHHHHHHTTCE-EEEEECC---CEEEEEESSSC
T ss_pred             EEE--EeCcHH----HHHHHHHCCCE-EEecCCCCCCCceeEEecCCC
Confidence            994  444333    34556666 53 555553333346788876543

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=97.82  E-value=1.8e-05  Score=79.89  Aligned_cols=93  Identities=12%  Similarity=0.134  Sum_probs=71.6

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||+|.|.++..+.+.. +.+++++|+ |.+++.|+++      ++++++.+|..+-                  
T Consensus       189 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~------------------  243 (352)
T 1fp2_A          189 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS------NNLTYVGGDMFTS------------------  243 (352)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB------TTEEEEECCTTTC------------------
T ss_pred             CceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC------CCcEEEeccccCC------------------
Confidence            5799999999999999888875 689999999 9999998763      4599999997531                  


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCCh---HHHHHHHHHccCc---CcEEEEEe
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVR---KDVLLAARLILSD---FGIFVMNV  406 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~---~efl~~~~~~L~~---~Gilv~N~  406 (478)
                                   .+  .||+|++--    .   +    .++-+   ..+|+.+++.|+|   ||.+++.-
T Consensus       244 -------------~p--~~D~v~~~~----~---l----h~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e  288 (352)
T 1fp2_A          244 -------------IP--NADAVLLKY----I---L----HNWTDKDCLRILKKCKEAVTNDGKRGKVTIID  288 (352)
T ss_dssp             -------------CC--CCSEEEEES----C---G----GGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred             -------------CC--CccEEEeeh----h---h----ccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence                         12  399999821    0   1    01112   3899999999999   99887753

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=97.81  E-value=6.2e-05  Score=72.51  Aligned_cols=58  Identities=19%  Similarity=0.232  Sum_probs=51.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHH
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEF  323 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~  323 (478)
                      ..+||.||+|.|.++..|.+.. .+|++||+|+.+++.|++.+..  .++++++.+|+.++
T Consensus        31 ~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~--~~~v~~~~~D~~~~   88 (244)
T 1qam_A           31 HDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVD--HDNFQVLNKDILQF   88 (244)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTT--CCSEEEECCCGGGC
T ss_pred             CCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhcc--CCCeEEEEChHHhC
Confidence            4689999999999999998774 7999999999999999998753  36899999999865

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=97.76  E-value=6.8e-05  Score=74.97  Aligned_cols=60  Identities=18%  Similarity=0.200  Sum_probs=51.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHH
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEF  323 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~  323 (478)
                      ..+||.+|+|+|..+..+.+.. +.+|++||+|+.+++.|++.+.... ++++++.+|..++
T Consensus        27 g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g-~~v~~v~~d~~~l   87 (301)
T 1m6y_A           27 EKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREA   87 (301)
T ss_dssp             TCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGH
T ss_pred             CCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCHHHH
Confidence            4699999999999999998876 6899999999999999999875322 6899999997765

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=97.74  E-value=1.1e-05  Score=78.72  Aligned_cols=64  Identities=19%  Similarity=0.148  Sum_probs=52.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECCh-------HHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHH
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDE-------VVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKL  327 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp-------~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~  327 (478)
                      ..+||.+|+|.|..+.++... +.+|++||++|       ..++.|++..... -..+++++.+|+.+++...
T Consensus        84 ~~~VLDlgcG~G~~a~~lA~~-g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~  155 (258)
T 2r6z_A           84 HPTVWDATAGLGRDSFVLASL-GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPAL  155 (258)
T ss_dssp             CCCEEETTCTTCHHHHHHHHT-TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHH
T ss_pred             cCeEEEeeCccCHHHHHHHHh-CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhh
Confidence            469999999999999988875 67999999999       8899888754221 1246999999999998653

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=97.69  E-value=2.2e-05  Score=82.23  Aligned_cols=112  Identities=15%  Similarity=0.111  Sum_probs=76.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--------------CCEEEEEECChHHHHHHHHhcCCCCC--CCeEEEEchHHHHHHH
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--------------DFEVVGVEMDEVVLRVARQYFGLEDG--EFLQVSVGDAIEFLEK  326 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--------------~~~V~~VEiDp~Vl~vA~~~Fg~~~d--~rl~v~v~Dg~~~l~~  326 (478)
                      ..+||..|||+|.+...+.++.              ..++.++|+|+.++++|+..+-+..-  .+.+++++|.+...  
T Consensus       172 ~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~--  249 (445)
T 2okc_A          172 GETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE--  249 (445)
T ss_dssp             TCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC--
T ss_pred             CCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCc--
Confidence            4689999999999877766652              36899999999999999976533221  25788999986531  


Q ss_pred             HHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCC-CCCCCC-------CCCCCCCCCChHHHHHHHHHccCc
Q 038592          327 LARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLD-SGDARN-------GTSAPPVEFVRKDVLLAARLILSD  398 (478)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~-s~d~~~-------g~s~Pp~~f~~~efl~~~~~~L~~  398 (478)
                                                   ...+||+|+.+.. ......       .+.. |..-....|++.+.+.|+|
T Consensus       250 -----------------------------~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~-~~~~~~~~fl~~~~~~Lk~  299 (445)
T 2okc_A          250 -----------------------------PSTLVDVILANPPFGTRPAGSVDINRPDFYV-ETKNNQLNFLQHMMLMLKT  299 (445)
T ss_dssp             -----------------------------CSSCEEEEEECCCSSCCCTTCCCCCCTTSSS-CCSCHHHHHHHHHHHHEEE
T ss_pred             -----------------------------ccCCcCEEEECCCCCCcccccchhhHhhcCC-CCcchHHHHHHHHHHHhcc
Confidence                                         2347999999631 111000       0000 1111235899999999999


Q ss_pred             CcEEEEEe
Q 038592          399 FGIFVMNV  406 (478)
Q Consensus       399 ~Gilv~N~  406 (478)
                      ||.+++-+
T Consensus       300 gG~~a~V~  307 (445)
T 2okc_A          300 GGRAAVVL  307 (445)
T ss_dssp             EEEEEEEE
T ss_pred             CCEEEEEE
Confidence            99887655

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=97.68  E-value=2.9e-05  Score=84.97  Aligned_cols=124  Identities=20%  Similarity=0.152  Sum_probs=82.5

Q ss_pred             hhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhC---C--CEEEEEECChHHHHHHHHhcCC-CCC
Q 038592          237 HVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQL---D--FEVVGVEMDEVVLRVARQYFGL-EDG  310 (478)
Q Consensus       237 ~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~---~--~~V~~VEiDp~Vl~vA~~~Fg~-~~d  310 (478)
                      ..|.+||..++.-..+..   ........||++|+|.|-|.++..+..   +  ++|.+||.+| +..+|++.... .-+
T Consensus       335 ~~Ye~AI~~Al~d~~~~~---~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~  410 (637)
T 4gqb_A          335 SQYQQAIYKCLLDRVPEE---EKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWG  410 (637)
T ss_dssp             HHHHHHHHHHHHHHSCGG---GTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTG
T ss_pred             HHHHHHHHHHHHHhhhhc---cccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCC
Confidence            457788887654221110   111224579999999999977666542   2  4899999998 45566654321 125


Q ss_pred             CCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHH
Q 038592          311 EFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLL  390 (478)
Q Consensus       311 ~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~  390 (478)
                      ++++|+.+|..++                               ...++.|+||........   +   -+.  -.+.|.
T Consensus       411 dkVtVI~gd~eev-------------------------------~LPEKVDIIVSEwMG~fL---l---~E~--mlevL~  451 (637)
T 4gqb_A          411 SQVTVVSSDMREW-------------------------------VAPEKADIIVSELLGSFA---D---NEL--SPECLD  451 (637)
T ss_dssp             GGEEEEESCTTTC-------------------------------CCSSCEEEEECCCCBTTB---G---GGC--HHHHHH
T ss_pred             CeEEEEeCcceec-------------------------------cCCcccCEEEEEcCcccc---c---ccC--CHHHHH
Confidence            7899999999877                               145789999997654321   1   122  246788


Q ss_pred             HHHHccCcCcEEE
Q 038592          391 AARLILSDFGIFV  403 (478)
Q Consensus       391 ~~~~~L~~~Gilv  403 (478)
                      ...+.|+|||+++
T Consensus       452 Ardr~LKPgGimi  464 (637)
T 4gqb_A          452 GAQHFLKDDGVSI  464 (637)
T ss_dssp             HHGGGEEEEEEEE
T ss_pred             HHHHhcCCCcEEc
Confidence            8889999999875

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=97.66  E-value=0.00019  Score=69.79  Aligned_cols=102  Identities=12%  Similarity=-0.015  Sum_probs=71.9

Q ss_pred             CCCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          262 FRPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       262 ~~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      .|.+||.||+|.|-|+..+.  ...+++++|||+.++++|++++... +.+.++.+.|...-                  
T Consensus       105 ~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~-g~~~~~~v~D~~~~------------------  163 (253)
T 3frh_A          105 TPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREK-DWDFTFALQDVLCA------------------  163 (253)
T ss_dssp             CCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHT-TCEEEEEECCTTTS------------------
T ss_pred             CCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhc-CCCceEEEeecccC------------------
Confidence            47899999999999998777  6789999999999999999986432 36688888887643                  


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVI  407 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~  407 (478)
                                   .....||+|++=.-       +.|- ++.-....+ .+...|+++|++| |+.
T Consensus       164 -------------~~~~~~DvvLllk~-------lh~L-E~q~~~~~~-~ll~aL~~~~vvV-sfP  206 (253)
T 3frh_A          164 -------------PPAEAGDLALIFKL-------LPLL-EREQAGSAM-ALLQSLNTPRMAV-SFP  206 (253)
T ss_dssp             -------------CCCCBCSEEEEESC-------HHHH-HHHSTTHHH-HHHHHCBCSEEEE-EEE
T ss_pred             -------------CCCCCcchHHHHHH-------HHHh-hhhchhhHH-HHHHHhcCCCEEE-EcC
Confidence                         14568999977210       0000 001112233 6777999987665 565

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=97.64  E-value=0.0002  Score=70.94  Aligned_cols=161  Identities=12%  Similarity=0.066  Sum_probs=109.7

Q ss_pred             CeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCccc
Q 038592          264 PKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACS  343 (478)
Q Consensus       264 ~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~  343 (478)
                      ..+|.+=.|+|+++..+.. .+.+++.||+++..++.-++.+..  +++++|+..|+.++++....              
T Consensus        93 ~~~LDlfaGSGaLgiEaLS-~~d~~vfvE~~~~a~~~L~~Nl~~--~~~~~V~~~D~~~~L~~l~~--------------  155 (283)
T 2oo3_A           93 NSTLSYYPGSPYFAINQLR-SQDRLYLCELHPTEYNFLLKLPHF--NKKVYVNHTDGVSKLNALLP--------------  155 (283)
T ss_dssp             SSSCCEEECHHHHHHHHSC-TTSEEEEECCSHHHHHHHTTSCCT--TSCEEEECSCHHHHHHHHCS--------------
T ss_pred             CCceeEeCCcHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHhCc--CCcEEEEeCcHHHHHHHhcC--------------
Confidence            4678888999999987766 347999999999999999999864  57899999999999987421              


Q ss_pred             ccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC--ChHHHHHHHHH--ccCcCcEEEEEeCCCCchHHHHHHH
Q 038592          344 LKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF--VRKDVLLAARL--ILSDFGIFVMNVIPPNRSFYDMLIQ  419 (478)
Q Consensus       344 ~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f--~~~efl~~~~~--~L~~~Gilv~N~~~~~~~~~~~v~~  419 (478)
                                  +..+||+|++|            ||-+.  .-...++.+.+  .+.++|+++++..--+....+.+.+
T Consensus       156 ------------~~~~fdLVfiD------------PPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~~~~~~~~~  211 (283)
T 2oo3_A          156 ------------PPEKRGLIFID------------PSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLR  211 (283)
T ss_dssp             ------------CTTSCEEEEEC------------CCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHHH
T ss_pred             ------------CCCCccEEEEC------------CCCCCCcHHHHHHHHHHHhCccCCCeEEEEEEeccchHHHHHHHH
Confidence                        34579999997            34331  22445555555  5678999999876666666777888


Q ss_pred             HHHHhcCccE--EEeecccc-----eEEEEEEcCCCCCCcchhhhhhhHHHHHHh
Q 038592          420 EFRDVFQELY--EIDVGNEE-----NFVLIATGLSIVSSGSDCENAFGKKLRLLI  467 (478)
Q Consensus       420 ~l~~vF~~v~--~~~v~~~~-----N~Vl~a~~~~~~~~~~~~~~~~~~~l~~~i  467 (478)
                      .|++.=..+.  ++.+..+.     -.=++..+-|..  ..+..+...+.|.+.+
T Consensus       212 ~l~~~~~~~l~~el~~~~~~~~gm~gsGm~viNpP~~--l~~~~~~~l~~l~~~l  264 (283)
T 2oo3_A          212 KMREISSKSVRIELHLNPLINEGMTGCGLWIINPPYT--FPSEIKLVLETLTTYF  264 (283)
T ss_dssp             HHHHHCSSEEEEEEECCCSSCCSCCEEEEEEESCCTT--HHHHHHHHHHHHHHHS
T ss_pred             HHHhcCCCeEEEEEEecCCCCCCcCceeEEEECCchh--HHHHHHHHHHHHHHHh
Confidence            8875432433  33332111     122444455543  4445556666676644

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=97.62  E-value=4.8e-05  Score=74.21  Aligned_cols=58  Identities=22%  Similarity=0.361  Sum_probs=51.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHH
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEF  323 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~  323 (478)
                      ..+||.||+|.|.++..|.+. ..+|++||+|+.+++.|++.+..  .++++++.+|+.++
T Consensus        30 ~~~VLEIG~G~G~lt~~La~~-~~~V~avEid~~~~~~~~~~~~~--~~~v~~i~~D~~~~   87 (255)
T 3tqs_A           30 TDTLVEIGPGRGALTDYLLTE-CDNLALVEIDRDLVAFLQKKYNQ--QKNITIYQNDALQF   87 (255)
T ss_dssp             TCEEEEECCTTTTTHHHHTTT-SSEEEEEECCHHHHHHHHHHHTT--CTTEEEEESCTTTC
T ss_pred             cCEEEEEcccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHhh--CCCcEEEEcchHhC
Confidence            468999999999999999876 47999999999999999998763  46899999999986

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=97.56  E-value=2.5e-05  Score=76.49  Aligned_cols=62  Identities=21%  Similarity=0.175  Sum_probs=50.3

Q ss_pred             CeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcC-----CC-C---CCCeEEEEchHHHHHHH
Q 038592          264 PKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFG-----LE-D---GEFLQVSVGDAIEFLEK  326 (478)
Q Consensus       264 ~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg-----~~-~---d~rl~v~v~Dg~~~l~~  326 (478)
                      .+||.+|+|.|..+.++... +.+|++||++|.+.+++++.+.     .. .   .++++++.+|+.++++.
T Consensus        90 ~~VLDl~~G~G~dal~lA~~-g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~  160 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD  160 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHH-TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTT
T ss_pred             CEEEEcCCcCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHh
Confidence            69999999999999998876 6689999999998777766542     11 1   15799999999999753

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=97.54  E-value=0.00017  Score=79.47  Aligned_cols=128  Identities=14%  Similarity=0.021  Sum_probs=81.7

Q ss_pred             hhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhC--------------CCEEEEEECChHHHHHHH
Q 038592          237 HVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQL--------------DFEVVGVEMDEVVLRVAR  302 (478)
Q Consensus       237 ~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~--------------~~~V~~VEiDp~Vl~vA~  302 (478)
                      ..|.++|...+.-....      .+..+-||+||+|.|.|.++.....              ..+|.+||.+|..+...+
T Consensus       390 ~~Y~~AI~~al~d~~~~------~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~  463 (745)
T 3ua3_A          390 DVYGEAVVGALKDLGAD------GRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLK  463 (745)
T ss_dssp             HHHHHHHHHHHHHHHTT------CCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcc------cCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHH
Confidence            45777777764221100      0113579999999999986543321              249999999996654443


Q ss_pred             HhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCC
Q 038592          303 QYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVE  382 (478)
Q Consensus       303 ~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~  382 (478)
                      +...-.-+++++|+.+|..++---...                         ...++.|+||..+-...       ...+
T Consensus       464 ~~~~Ng~~d~VtVI~gd~eev~lp~~~-------------------------~~~ekVDIIVSElmGsf-------l~nE  511 (745)
T 3ua3_A          464 YMNVRTWKRRVTIIESDMRSLPGIAKD-------------------------RGFEQPDIIVSELLGSF-------GDNE  511 (745)
T ss_dssp             HHHHHTTTTCSEEEESCGGGHHHHHHH-------------------------TTCCCCSEEEECCCBTT-------BGGG
T ss_pred             HHHhcCCCCeEEEEeCchhhccccccc-------------------------CCCCcccEEEEeccccc-------cchh
Confidence            322111246899999999998321000                         12578999999664321       1122


Q ss_pred             CChHHHHHHHHHccCcCcEEE
Q 038592          383 FVRKDVLLAARLILSDFGIFV  403 (478)
Q Consensus       383 f~~~efl~~~~~~L~~~Gilv  403 (478)
                       +.++.|..+.+.|+|+|+++
T Consensus       512 -L~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          512 -LSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             -SHHHHHHTTGGGSCTTCEEE
T ss_pred             -ccHHHHHHHHHhCCCCcEEE
Confidence             45789999999999999876

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=97.50  E-value=0.00017  Score=77.68  Aligned_cols=114  Identities=14%  Similarity=0.016  Sum_probs=76.7

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-------------------CCEEEEEECChHHHHHHHHhcCCCCCC-----CeEEEEc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-------------------DFEVVGVEMDEVVLRVARQYFGLEDGE-----FLQVSVG  318 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-------------------~~~V~~VEiDp~Vl~vA~~~Fg~~~d~-----rl~v~v~  318 (478)
                      ..+|+..+||+|++...+.+++                   ..++.++|+|+.++++|+..+-+...+     +.+++++
T Consensus       170 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~g  249 (541)
T 2ar0_A          170 REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLG  249 (541)
T ss_dssp             TCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEES
T ss_pred             CCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEeC
Confidence            4689999999999776655542                   137999999999999999765443222     3789999


Q ss_pred             hHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCC-CCCCCC----CCCCCCCCCChHHHHHHHH
Q 038592          319 DAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLD-SGDARN----GTSAPPVEFVRKDVLLAAR  393 (478)
Q Consensus       319 Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~-s~d~~~----g~s~Pp~~f~~~efl~~~~  393 (478)
                      |.+..-..                             ...+||+|+.+.. ......    ... .|..=....|++.+.
T Consensus       250 DtL~~~~~-----------------------------~~~~fD~Vv~NPPf~~~~~~~~~~~~~-~~~~~~~~~Fl~~~l  299 (541)
T 2ar0_A          250 NTLGSDGE-----------------------------NLPKAHIVATNPPFGSAAGTNITRTFV-HPTSNKQLCFMQHII  299 (541)
T ss_dssp             CTTSHHHH-----------------------------TSCCEEEEEECCCCTTCSSCCCCSCCS-SCCSCHHHHHHHHHH
T ss_pred             CCcccccc-----------------------------cccCCeEEEECCCcccccchhhHhhcC-CCCCchHHHHHHHHH
Confidence            98765321                             3457999999641 111000    000 011112457999999


Q ss_pred             HccCcCcEEEEEe
Q 038592          394 LILSDFGIFVMNV  406 (478)
Q Consensus       394 ~~L~~~Gilv~N~  406 (478)
                      +.|++||.+++=+
T Consensus       300 ~~Lk~gGr~a~V~  312 (541)
T 2ar0_A          300 ETLHPGGRAAVVV  312 (541)
T ss_dssp             HHEEEEEEEEEEE
T ss_pred             HHhCCCCEEEEEe
Confidence            9999999887644

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=97.50  E-value=7.3e-05  Score=72.55  Aligned_cols=57  Identities=26%  Similarity=0.306  Sum_probs=50.6

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHH
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEF  323 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~  323 (478)
                      ..+||.||+|.|.++..|.+....+|++||+|+.+++.|++. +   ..+++++.+|+.++
T Consensus        32 ~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~-~---~~~v~~i~~D~~~~   88 (249)
T 3ftd_A           32 GNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI-G---DERLEVINEDASKF   88 (249)
T ss_dssp             TCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS-C---CTTEEEECSCTTTC
T ss_pred             cCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc-c---CCCeEEEEcchhhC
Confidence            468999999999999999887458999999999999999887 3   46899999999876

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=97.46  E-value=0.00011  Score=74.16  Aligned_cols=95  Identities=15%  Similarity=0.131  Sum_probs=70.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||+|.|.++..+.+.. +.+++++|+ |.+++.|+++      ++++++.+|..+-                  
T Consensus       194 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~------------------  248 (358)
T 1zg3_A          194 LESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTGN------ENLNFVGGDMFKS------------------  248 (358)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCCC------SSEEEEECCTTTC------------------
T ss_pred             CCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhcccC------CCcEEEeCccCCC------------------
Confidence            5799999999999998888875 689999999 8999888752      4599999987641                  


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCc---CcEEEEE
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSD---FGIFVMN  405 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~---~Gilv~N  405 (478)
                                   .+  .||+|++---       +..-+.. ....+|+.+++.|+|   ||.+++.
T Consensus       249 -------------~~--~~D~v~~~~v-------lh~~~d~-~~~~~l~~~~~~L~p~~~gG~l~i~  292 (358)
T 1zg3_A          249 -------------IP--SADAVLLKWV-------LHDWNDE-QSLKILKNSKEAISHKGKDGKVIII  292 (358)
T ss_dssp             -------------CC--CCSEEEEESC-------GGGSCHH-HHHHHHHHHHHHTGGGGGGCEEEEE
T ss_pred             -------------CC--CceEEEEccc-------ccCCCHH-HHHHHHHHHHHhCCCCCCCcEEEEE
Confidence                         12  4999998310       1000100 123899999999999   9987763

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=97.45  E-value=9.2e-05  Score=66.62  Aligned_cols=88  Identities=19%  Similarity=0.183  Sum_probs=63.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.||+|.               +.||+++.|++.|++.+.    .+++++++|+.++-..                
T Consensus        13 g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~----~~~~~~~~d~~~~~~~----------------   57 (176)
T 2ld4_A           13 GQFVAVVWDKS---------------SPVEALKGLVDKLQALTG----NEGRVSVENIKQLLQS----------------   57 (176)
T ss_dssp             TSEEEEEECTT---------------SCHHHHHHHHHHHHHHTT----TTSEEEEEEGGGGGGG----------------
T ss_pred             CCEEEEecCCc---------------eeeeCCHHHHHHHHHhcc----cCcEEEEechhcCccc----------------
Confidence            57999999985               239999999999999864    2489999998765210                


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                 +..+.+||+|+.-.    ....+  ++.   ...+++.+++.|+|||.|++.
T Consensus        58 -----------~~~~~~fD~V~~~~----~l~~~--~~~---~~~~l~~~~r~LkpgG~l~~~  100 (176)
T 2ld4_A           58 -----------AHKESSFDIILSGL----VPGST--TLH---SAEILAEIARILRPGGCLFLK  100 (176)
T ss_dssp             -----------CCCSSCEEEEEECC----STTCC--CCC---CHHHHHHHHHHEEEEEEEEEE
T ss_pred             -----------cCCCCCEeEEEECC----hhhhc--ccC---HHHHHHHHHHHCCCCEEEEEE
Confidence                       01356799999821    11111  111   278999999999999999984

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=97.44  E-value=9e-05  Score=72.89  Aligned_cols=101  Identities=13%  Similarity=0.054  Sum_probs=73.9

Q ss_pred             CCCeEEEEeCchhHHHHHHHhh-CCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          262 FRPKALCVGVGGGALVSFLRTQ-LDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       262 ~~~~VLvIGlGgG~L~~~L~~~-~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      .|.+||.||||.|-|+..+... +..++.++|||+.+++++++++... +.+.++.+.|-..-                 
T Consensus       132 ~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~-g~~~~~~v~D~~~~-----------------  193 (281)
T 3lcv_B          132 RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRL-NVPHRTNVADLLED-----------------  193 (281)
T ss_dssp             CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHT-TCCEEEEECCTTTS-----------------
T ss_pred             CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhc-CCCceEEEeeeccc-----------------
Confidence            3789999999999999888776 4689999999999999999997532 23467777775532                 


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChH----HHHHHHHHccCcCcEEEEEeCC
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRK----DVLLAARLILSDFGIFVMNVIP  408 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~----efl~~~~~~L~~~Gilv~N~~~  408 (478)
                                    ....+||++++-.  .          .+.++.    ..+ .+...|+++|++| |...
T Consensus       194 --------------~p~~~~DvaL~lk--t----------i~~Le~q~kg~g~-~ll~aL~~~~vvV-Sfp~  237 (281)
T 3lcv_B          194 --------------RLDEPADVTLLLK--T----------LPCLETQQRGSGW-EVIDIVNSPNIVV-TFPT  237 (281)
T ss_dssp             --------------CCCSCCSEEEETT--C----------HHHHHHHSTTHHH-HHHHHSSCSEEEE-EEEC
T ss_pred             --------------CCCCCcchHHHHH--H----------HHHhhhhhhHHHH-HHHHHhCCCCEEE-eccc
Confidence                          2567899998821  0          112222    344 8999999988876 4444

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=97.41  E-value=0.00035  Score=72.09  Aligned_cols=112  Identities=9%  Similarity=0.075  Sum_probs=74.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhh-CC--------------------------------------CEEEEEECChHHHHHHHH
Q 038592          263 RPKALCVGVGGGALVSFLRTQ-LD--------------------------------------FEVVGVEMDEVVLRVARQ  303 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~-~~--------------------------------------~~V~~VEiDp~Vl~vA~~  303 (478)
                      ...++..+||+|+++...... .+                                      .+|+++|+|+.+++.|++
T Consensus       195 ~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar~  274 (384)
T 3ldg_A          195 DKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIARK  274 (384)
T ss_dssp             TSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHH
T ss_pred             CCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHHH
Confidence            468999999999988666543 12                                      469999999999999998


Q ss_pred             hcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCC
Q 038592          304 YFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVE  382 (478)
Q Consensus       304 ~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~  382 (478)
                      ..... .+.+++++.+|+.++.                               ....||+|++|..=+..   +   ...
T Consensus       275 Na~~~gl~~~I~~~~~D~~~l~-------------------------------~~~~fD~Iv~NPPYG~r---l---~~~  317 (384)
T 3ldg_A          275 NAREVGLEDVVKLKQMRLQDFK-------------------------------TNKINGVLISNPPYGER---L---LDD  317 (384)
T ss_dssp             HHHHTTCTTTEEEEECCGGGCC-------------------------------CCCCSCEEEECCCCTTT---T---SCH
T ss_pred             HHHHcCCCCceEEEECChHHCC-------------------------------ccCCcCEEEECCchhhc---c---CCH
Confidence            75321 2357999999998762                               23479999996321110   0   000


Q ss_pred             CChHHHHHHHHHccCc--CcEEEEEeCCCCchH
Q 038592          383 FVRKDVLLAARLILSD--FGIFVMNVIPPNRSF  413 (478)
Q Consensus       383 f~~~efl~~~~~~L~~--~Gilv~N~~~~~~~~  413 (478)
                      ---..+|+.+.+.|++  ||-+.+=  +.+.++
T Consensus       318 ~~l~~ly~~lg~~lk~~~g~~~~ii--t~~~~l  348 (384)
T 3ldg_A          318 KAVDILYNEMGETFAPLKTWSQFIL--TNDTDF  348 (384)
T ss_dssp             HHHHHHHHHHHHHHTTCTTSEEEEE--ESCTTH
T ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEE--ECCHHH
Confidence            0124577777777765  7776643  334454

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=97.40  E-value=0.00043  Score=71.57  Aligned_cols=61  Identities=13%  Similarity=0.168  Sum_probs=47.6

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-C--------------------------------------CEEEEEECChHHHHHHHH
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-D--------------------------------------FEVVGVEMDEVVLRVARQ  303 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~--------------------------------------~~V~~VEiDp~Vl~vA~~  303 (478)
                      ...+|..+||+|+++..+.... +                                      .+|+++|+|+.+++.|++
T Consensus       202 ~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar~  281 (393)
T 3k0b_A          202 DRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQ  281 (393)
T ss_dssp             TSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHH
T ss_pred             CCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHHH
Confidence            4689999999999876655431 2                                      469999999999999998


Q ss_pred             hcCCC-CCCCeEEEEchHHHH
Q 038592          304 YFGLE-DGEFLQVSVGDAIEF  323 (478)
Q Consensus       304 ~Fg~~-~d~rl~v~v~Dg~~~  323 (478)
                      ..... .+.+++++.+|+.++
T Consensus       282 Na~~~gl~~~I~~~~~D~~~~  302 (393)
T 3k0b_A          282 NAVEAGLGDLITFRQLQVADF  302 (393)
T ss_dssp             HHHHTTCTTCSEEEECCGGGC
T ss_pred             HHHHcCCCCceEEEECChHhC
Confidence            75322 234799999999875

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=97.35  E-value=9.8e-05  Score=73.00  Aligned_cols=57  Identities=32%  Similarity=0.497  Sum_probs=49.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCC---CEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHH
Q 038592          263 RPKALCVGVGGGALVSFLRTQLD---FEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEF  323 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~---~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~  323 (478)
                      ..+||.||+|.|.++..|.+...   .+|++||+|+.+++.|++.+    .++++++.+|+.++
T Consensus        43 ~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~----~~~v~~i~~D~~~~  102 (279)
T 3uzu_A           43 GERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF----GELLELHAGDALTF  102 (279)
T ss_dssp             TCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH----GGGEEEEESCGGGC
T ss_pred             cCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc----CCCcEEEECChhcC
Confidence            46899999999999999887632   34999999999999999884    46899999999886

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=97.34  E-value=0.00033  Score=72.25  Aligned_cols=61  Identities=23%  Similarity=0.388  Sum_probs=47.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-C--------------------------------------CEEEEEECChHHHHHHHH
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-D--------------------------------------FEVVGVEMDEVVLRVARQ  303 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~--------------------------------------~~V~~VEiDp~Vl~vA~~  303 (478)
                      ..++|..|||+|+++..+.... +                                      .+|+++|+|+.+++.|++
T Consensus       196 ~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar~  275 (385)
T 3ldu_A          196 GRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIARE  275 (385)
T ss_dssp             TSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHHH
T ss_pred             CCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHH
Confidence            4689999999999887665541 1                                      579999999999999998


Q ss_pred             hcCCC-CCCCeEEEEchHHHH
Q 038592          304 YFGLE-DGEFLQVSVGDAIEF  323 (478)
Q Consensus       304 ~Fg~~-~d~rl~v~v~Dg~~~  323 (478)
                      ..... .+.+++++.+|+.++
T Consensus       276 Na~~~gl~~~i~~~~~D~~~l  296 (385)
T 3ldu_A          276 NAEIAGVDEYIEFNVGDATQF  296 (385)
T ss_dssp             HHHHHTCGGGEEEEECCGGGC
T ss_pred             HHHHcCCCCceEEEECChhhc
Confidence            76321 134799999998875

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=97.33  E-value=0.00016  Score=70.41  Aligned_cols=58  Identities=21%  Similarity=0.142  Sum_probs=47.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHH
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEF  323 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~  323 (478)
                      ..+||.||+|.|.++. +.+....+|++||+|+.+++.|++.+..  .++++++.+|+.++
T Consensus        22 ~~~VLEIG~G~G~lt~-l~~~~~~~v~avEid~~~~~~a~~~~~~--~~~v~~i~~D~~~~   79 (252)
T 1qyr_A           22 GQAMVEIGPGLAALTE-PVGERLDQLTVIELDRDLAARLQTHPFL--GPKLTIYQQDAMTF   79 (252)
T ss_dssp             TCCEEEECCTTTTTHH-HHHTTCSCEEEECCCHHHHHHHHTCTTT--GGGEEEECSCGGGC
T ss_pred             cCEEEEECCCCcHHHH-hhhCCCCeEEEEECCHHHHHHHHHHhcc--CCceEEEECchhhC
Confidence            4589999999999999 7653223399999999999999987753  35899999999885

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=97.33  E-value=0.00078  Score=66.72  Aligned_cols=76  Identities=21%  Similarity=0.208  Sum_probs=61.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ...++..++|+|+-+.+|.+. +.+|+++|.||..++.|++ +.-   +|++++.+|..++-.-+..             
T Consensus        23 gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~-L~~---~rv~lv~~~f~~l~~~L~~-------------   84 (285)
T 1wg8_A           23 GGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKG-LHL---PGLTVVQGNFRHLKRHLAA-------------   84 (285)
T ss_dssp             TCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHH-TCC---TTEEEEESCGGGHHHHHHH-------------
T ss_pred             CCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-hcc---CCEEEEECCcchHHHHHHH-------------
Confidence            358999999999999999987 7899999999999999999 642   6999999999876332221             


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLD  368 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~  368 (478)
                                  ....++|.|+.|+.
T Consensus        85 ------------~g~~~vDgIL~DLG   98 (285)
T 1wg8_A           85 ------------LGVERVDGILADLG   98 (285)
T ss_dssp             ------------TTCSCEEEEEEECS
T ss_pred             ------------cCCCCcCEEEeCCc
Confidence                        12357999999985

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=97.05  E-value=0.00085  Score=73.60  Aligned_cols=112  Identities=17%  Similarity=0.128  Sum_probs=79.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhh-----------C--CCEEEEEEC---ChHHHHHHHHhcCC------------C------
Q 038592          263 RPKALCVGVGGGALVSFLRTQ-----------L--DFEVVGVEM---DEVVLRVARQYFGL------------E------  308 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~-----------~--~~~V~~VEi---Dp~Vl~vA~~~Fg~------------~------  308 (478)
                      ..+||.+|.|+|.-.....+.           .  ..+++.+|.   +++.+..|-.++.-            +      
T Consensus        67 ~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (676)
T 3ps9_A           67 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC  146 (676)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEE
T ss_pred             ceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCc
Confidence            468999999999733222111           1  257999999   88888755443210            0      


Q ss_pred             -----C--CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCC
Q 038592          309 -----D--GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPV  381 (478)
Q Consensus       309 -----~--d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~  381 (478)
                           .  .-+++++.+|+.+.+.++..                         ....+||+|++|.|++..       .+
T Consensus       147 ~~~~~~~~~~~l~l~~gd~~~~l~~~~~-------------------------~~~~~~d~~~~D~f~p~~-------np  194 (676)
T 3ps9_A          147 HRLLLDAGRVTLDLWFGDINELTSQLDD-------------------------SLNQKVDAWFLDGFAPAK-------NP  194 (676)
T ss_dssp             EEEEEGGGTEEEEEEESCHHHHGGGBCG-------------------------GGTTCEEEEEECCSCGGG-------CG
T ss_pred             eEEEecCCcEEEEEecCCHHHHHHhccc-------------------------ccCCcccEEEECCCCCcC-------Ch
Confidence                 1  24678999999999865210                         024679999999998643       24


Q ss_pred             CCChHHHHHHHHHccCcCcEEEEEe
Q 038592          382 EFVRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       382 ~f~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                      ++.+.++|..+.+++++||.+....
T Consensus       195 ~~w~~~~~~~l~~~~~~g~~~~t~~  219 (676)
T 3ps9_A          195 DMWTQNLFNAMARLARPGGTLATFT  219 (676)
T ss_dssp             GGSCHHHHHHHHHHEEEEEEEEESC
T ss_pred             hhhhHHHHHHHHHHhCCCCEEEecc
Confidence            6899999999999999999988543

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=96.99  E-value=0.0016  Score=64.16  Aligned_cols=131  Identities=14%  Similarity=0.077  Sum_probs=82.5

Q ss_pred             CeEEEEeCchhHHHHHHHhhCC-CEEEEEECChHHHHHHHHhcCCC---CCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          264 PKALCVGVGGGALVSFLRTQLD-FEVVGVEMDEVVLRVARQYFGLE---DGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       264 ~~VLvIGlGgG~L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~~---~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      .+||.||+|.|+++.++....+ ..+.++++.-.+ .    .-...   .+.++..+.+|. +..               
T Consensus        76 ~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl-~----~~pi~~~~~g~~ii~~~~~~-dv~---------------  134 (277)
T 3evf_A           76 GRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDG-H----EKPMNVQSLGWNIITFKDKT-DIH---------------  134 (277)
T ss_dssp             EEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTT-C----CCCCCCCBTTGGGEEEECSC-CTT---------------
T ss_pred             CEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccC-c----ccccccCcCCCCeEEEeccc-eeh---------------
Confidence            4899999999999998877654 477788776332 0    00111   011233333332 100               


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcC-cEEEEEeCCCCchHHHHHH
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDF-GIFVMNVIPPNRSFYDMLI  418 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~-Gilv~N~~~~~~~~~~~v~  418 (478)
                                    ...+.+||+|+.|+--.  + |... -.++.+...|+.+.+.|+|| |.|++-+..+-..-...++
T Consensus       135 --------------~l~~~~~DlVlsD~apn--s-G~~~-~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~~~~l~  196 (277)
T 3evf_A          135 --------------RLEPVKCDTLLCDIGES--S-SSSV-TEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDVLEKL  196 (277)
T ss_dssp             --------------TSCCCCCSEEEECCCCC--C-SCHH-HHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHH
T ss_pred             --------------hcCCCCccEEEecCccC--c-CchH-HHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCccHHHHH
Confidence                          01456799999996322  1 2210 01122234468888999999 9999999986344467789


Q ss_pred             HHHHHhcCccEEEee
Q 038592          419 QEFRDVFQELYEIDV  433 (478)
Q Consensus       419 ~~l~~vF~~v~~~~v  433 (478)
                      ..|++.|..|...+.
T Consensus       197 ~~lk~~F~~V~~~KP  211 (277)
T 3evf_A          197 ELLQRRFGGTVIRNP  211 (277)
T ss_dssp             HHHHHHHCCEEECCT
T ss_pred             HHHHHhcCCEEEEeC
Confidence            999999999887764

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=96.97  E-value=0.0028  Score=70.98  Aligned_cols=116  Identities=9%  Similarity=0.048  Sum_probs=74.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCC----CEEEEEECChHHHHHH--HHhcCC---C-CCCCeEEEEchHHHHHHHHHhhhc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLD----FEVVGVEMDEVVLRVA--RQYFGL---E-DGEFLQVSVGDAIEFLEKLARQIV  332 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~----~~V~~VEiDp~Vl~vA--~~~Fg~---~-~d~rl~v~v~Dg~~~l~~~~~~~~  332 (478)
                      ..+||..|+|+|++...+.+..+    .++.++|+|+..+++|  +.....   . ..+...+..+|....- .      
T Consensus       322 g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~-~------  394 (878)
T 3s1s_A          322 DEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLN-P------  394 (878)
T ss_dssp             TCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCC-G------
T ss_pred             CCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhccc-c------
Confidence            46999999999998888877652    5899999999999999  543322   1 1123456666655420 0      


Q ss_pred             CCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCC---------------CCCCCC-----CChHHHHHHH
Q 038592          333 GKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGT---------------SAPPVE-----FVRKDVLLAA  392 (478)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~---------------s~Pp~~-----f~~~efl~~~  392 (478)
                                            ....+||+|+.+..=.... ..               ...|..     -....|++.+
T Consensus       395 ----------------------~~~~kFDVVIgNPPYg~~~-~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~A  451 (878)
T 3s1s_A          395 ----------------------EDFANVSVVVMNPPYVSGV-TDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELV  451 (878)
T ss_dssp             ----------------------GGGTTEEEEEECCBCCSSC-CCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHH
T ss_pred             ----------------------cccCCCCEEEECCCccccc-cchhhhhhHHHHhhhhccccccccccccchHHHHHHHH
Confidence                                  1346799999964211000 00               000110     1245699999


Q ss_pred             HHccCcCcEEEEEeCC
Q 038592          393 RLILSDFGIFVMNVIP  408 (478)
Q Consensus       393 ~~~L~~~Gilv~N~~~  408 (478)
                      .+.|++||.+++=+..
T Consensus       452 l~lLKpGGrLAfIlP~  467 (878)
T 3s1s_A          452 TELVQDGTVISAIMPK  467 (878)
T ss_dssp             HHHSCTTCEEEEEEET
T ss_pred             HHhcCCCcEEEEEECh
Confidence            9999999999875543

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=96.96  E-value=0.0034  Score=67.55  Aligned_cols=117  Identities=17%  Similarity=0.167  Sum_probs=79.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC----CCEEEEEECChHHHHHHHHhcCCCCC--CCeEEEEchHHHHHHHHHhhhcCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL----DFEVVGVEMDEVVLRVARQYFGLEDG--EFLQVSVGDAIEFLEKLARQIVGKNP  336 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~----~~~V~~VEiDp~Vl~vA~~~Fg~~~d--~rl~v~v~Dg~~~l~~~~~~~~~~~~  336 (478)
                      ..+|+..+||+|++...+.+++    ...+.++|+|+..+++|+..+-+...  ++.++..+|.+..-    .      +
T Consensus       222 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d----~------p  291 (542)
T 3lkd_A          222 GFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDED----W------P  291 (542)
T ss_dssp             TCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSC----S------C
T ss_pred             CCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceeccc----c------c
Confidence            4699999999998776666653    46999999999999999976533222  46889999977430    0      0


Q ss_pred             CCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCC--------------CCCCCCCCCCChHHHHHHHHHccC-cCcE
Q 038592          337 DSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDAR--------------NGTSAPPVEFVRKDVLLAARLILS-DFGI  401 (478)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~--------------~g~s~Pp~~f~~~efl~~~~~~L~-~~Gi  401 (478)
                                       .....+||+|+.+..=+...              -|. -||..-..-.|++.+.+.|+ ++|.
T Consensus       292 -----------------~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~-~~~~s~~~~~Fl~~~l~~Lk~~gGr  353 (542)
T 3lkd_A          292 -----------------TQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGK-LAPKSKADFAFLLHGYYHLKQDNGV  353 (542)
T ss_dssp             -----------------CSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSS-CCCTTCCHHHHHHHHHHTBCTTTCE
T ss_pred             -----------------ccccccccEEEecCCcCCccccchhhhhhhhhhhhhh-cCCCchhhHHHHHHHHHHhCCCcee
Confidence                             01356899999864211000              010 23333345579999999999 9999


Q ss_pred             EEEEeC
Q 038592          402 FVMNVI  407 (478)
Q Consensus       402 lv~N~~  407 (478)
                      +++=+.
T Consensus       354 ~a~VlP  359 (542)
T 3lkd_A          354 MAIVLP  359 (542)
T ss_dssp             EEEEEE
T ss_pred             EEEEec
Confidence            876443

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=96.96  E-value=0.00014  Score=69.61  Aligned_cols=58  Identities=17%  Similarity=0.293  Sum_probs=50.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHH
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEF  323 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~  323 (478)
                      ..+||.||+|.|.++..|.+. ..+|++||+|+.+++.|++.+.  ..++++++.+|+.++
T Consensus        30 ~~~VLDiG~G~G~~~~~l~~~-~~~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~~~   87 (245)
T 1yub_A           30 TDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQF   87 (245)
T ss_dssp             SEEEEECSCCCSSCSHHHHHH-SSEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTT
T ss_pred             CCEEEEEeCCCCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHhc--cCCceEEEECChhhc
Confidence            458999999999999998887 4899999999999999988775  346899999998765

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=96.83  E-value=0.0022  Score=70.50  Aligned_cols=112  Identities=16%  Similarity=0.102  Sum_probs=75.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhh--------C-----CCEEEEEEC---ChHHHHHHHHhcC-------------------C
Q 038592          263 RPKALCVGVGGGALVSFLRTQ--------L-----DFEVVGVEM---DEVVLRVARQYFG-------------------L  307 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~--------~-----~~~V~~VEi---Dp~Vl~vA~~~Fg-------------------~  307 (478)
                      +.+|+.+|.|.|.-...+.+.        +     ..+++.+|.   +.+.+..|-..|.                   +
T Consensus        59 ~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~  138 (689)
T 3pvc_A           59 SCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGC  138 (689)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEE
T ss_pred             ceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCc
Confidence            568999999999733322221        1     168999999   4455544332221                   0


Q ss_pred             ---C-CC--CCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCC
Q 038592          308 ---E-DG--EFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPV  381 (478)
Q Consensus       308 ---~-~d--~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~  381 (478)
                         . .+  -++++++||+.+.+.++..                         ....++|+|++|.|++..       .+
T Consensus       139 ~r~~~~~~~~~l~l~~gd~~~~l~~~~~-------------------------~~~~~~da~flD~f~p~~-------np  186 (689)
T 3pvc_A          139 HRILLADGAITLDLWFGDVNTLLPTLDD-------------------------SLNNQVDAWFLDGFAPAK-------NP  186 (689)
T ss_dssp             EEEEETTTTEEEEEEESCHHHHGGGCCG-------------------------GGTTCEEEEEECSSCC---------CC
T ss_pred             eEEEecCCcEEEEEEccCHHHHHhhccc-------------------------ccCCceeEEEECCCCCCC-------Ch
Confidence               0 12  2688999999999865210                         014679999999998653       23


Q ss_pred             CCChHHHHHHHHHccCcCcEEEEEe
Q 038592          382 EFVRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       382 ~f~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                      ++.+.+||..+.+++++||.+....
T Consensus       187 ~~w~~~~~~~l~~~~~~g~~~~t~~  211 (689)
T 3pvc_A          187 DMWNEQLFNAMARMTRPGGTFSTFT  211 (689)
T ss_dssp             TTCSHHHHHHHHHHEEEEEEEEESC
T ss_pred             hhhhHHHHHHHHHHhCCCCEEEecc
Confidence            5789999999999999999888543

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=96.71  E-value=0.0015  Score=70.40  Aligned_cols=115  Identities=14%  Similarity=0.107  Sum_probs=74.2

Q ss_pred             CeEEEEeCchhHHHHHHHhhC----------------CCEEEEEECChHHHHHHHHhcCCCC-CCCeEEEEchHHHHHHH
Q 038592          264 PKALCVGVGGGALVSFLRTQL----------------DFEVVGVEMDEVVLRVARQYFGLED-GEFLQVSVGDAIEFLEK  326 (478)
Q Consensus       264 ~~VLvIGlGgG~L~~~L~~~~----------------~~~V~~VEiDp~Vl~vA~~~Fg~~~-d~rl~v~v~Dg~~~l~~  326 (478)
                      .+||..+||+|++...+.+++                ...+.++|+|+..+++|+..+-+.. +.++.+..+|.+..-  
T Consensus       246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~--  323 (544)
T 3khk_A          246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDD--  323 (544)
T ss_dssp             EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSC--
T ss_pred             CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCc--
Confidence            489999999998765544321                3589999999999999997653321 223444667755320  


Q ss_pred             HHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCC-CCCCCC------------CC------CCCCCCCChHH
Q 038592          327 LARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLD-SGDARN------------GT------SAPPVEFVRKD  387 (478)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~-s~d~~~------------g~------s~Pp~~f~~~e  387 (478)
                                                 .....+||+|+.+.. +.....            |.      ..||..-..-.
T Consensus       324 ---------------------------~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~  376 (544)
T 3khk_A          324 ---------------------------QHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFA  376 (544)
T ss_dssp             ---------------------------SCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHH
T ss_pred             ---------------------------ccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHH
Confidence                                       013468999999642 110000            00      02444434457


Q ss_pred             HHHHHHHccCcCcEEEEEeC
Q 038592          388 VLLAARLILSDFGIFVMNVI  407 (478)
Q Consensus       388 fl~~~~~~L~~~Gilv~N~~  407 (478)
                      |++.+.+.|++||.+++=+.
T Consensus       377 Fl~~~l~~Lk~gGr~aiVlP  396 (544)
T 3khk_A          377 WMLHMLYHLAPTGSMALLLA  396 (544)
T ss_dssp             HHHHHHHTEEEEEEEEEEEE
T ss_pred             HHHHHHHHhccCceEEEEec
Confidence            99999999999999876553

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=96.55  E-value=0.0019  Score=64.17  Aligned_cols=135  Identities=13%  Similarity=0.039  Sum_probs=84.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCC-CEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLD-FEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||++.|+++.++.+..+ ..|++|++.......++. .. .....+.... ++.++. .               
T Consensus        82 g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~-~~~~~iv~~~-~~~di~-~---------------  142 (300)
T 3eld_A           82 TGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQ-TLGWNIVKFK-DKSNVF-T---------------  142 (300)
T ss_dssp             CEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CC-BTTGGGEEEE-CSCCTT-T---------------
T ss_pred             CCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-cc-ccCCceEEee-cCceee-e---------------
Confidence            46899999999999999998654 488899886432100000 00 0011111111 111110 0               


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcC-cEEEEEeCCCCchHHHHHHHH
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDF-GIFVMNVIPPNRSFYDMLIQE  420 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~-Gilv~N~~~~~~~~~~~v~~~  420 (478)
                                   ....++|+|+.|+-..   .|... -.++.+...|+.+...|+|| |.|++-+..+-......++..
T Consensus       143 -------------l~~~~~DlVlsD~APn---sG~~~-~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG~~~~~ll~~  205 (300)
T 3eld_A          143 -------------MPTEPSDTLLCDIGES---SSNPL-VERDRTMKVLENFERWKHVNTENFCVKVLAPYHPDVIEKLER  205 (300)
T ss_dssp             -------------SCCCCCSEEEECCCCC---CSSHH-HHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTSHHHHHHHHH
T ss_pred             -------------cCCCCcCEEeecCcCC---CCCHH-HHHHHHHHHHHHHHHHhcCCCCcEEEEeccccCccHHHHHHH
Confidence                         1356899999997432   23210 01223344578888999999 999999988644556788999


Q ss_pred             HHHhcCccEEEee
Q 038592          421 FRDVFQELYEIDV  433 (478)
Q Consensus       421 l~~vF~~v~~~~v  433 (478)
                      |++.|..|...+.
T Consensus       206 lk~~F~~V~~~KP  218 (300)
T 3eld_A          206 LQLRFGGGIVRVP  218 (300)
T ss_dssp             HHHHHCCEEECCT
T ss_pred             HHHhCCcEEEEeC
Confidence            9999999887764

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=96.51  E-value=0.0013  Score=64.93  Aligned_cols=134  Identities=13%  Similarity=-0.003  Sum_probs=83.4

Q ss_pred             CeEEEEeCchhHHHHHHHhhCC-CEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          264 PKALCVGVGGGALVSFLRTQLD-FEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       264 ~~VLvIGlGgG~L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      .+||.||+|-|+++.++....+ ..|.+|++.......+...  ...+.++.....+ .+. ..                
T Consensus        92 ~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~--~~~g~~ii~~~~~-~dv-~~----------------  151 (282)
T 3gcz_A           92 GIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR--TTLGWNLIRFKDK-TDV-FN----------------  151 (282)
T ss_dssp             EEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC--CBTTGGGEEEECS-CCG-GG----------------
T ss_pred             CEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc--ccCCCceEEeeCC-cch-hh----------------
Confidence            4899999999999998876544 4788998865422111100  0011122222211 111 01                


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcC--cEEEEEeCCCCchHHHHHHHH
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDF--GIFVMNVIPPNRSFYDMLIQE  420 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~--Gilv~N~~~~~~~~~~~v~~~  420 (478)
                                  ....++|+|+.|+--.   .|... -.+..+...|+.+.+.|+||  |.|++=+..+-..-...+++.
T Consensus       152 ------------l~~~~~DvVLSDmApn---sG~~~-~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~~~~l~~~  215 (282)
T 3gcz_A          152 ------------MEVIPGDTLLCDIGES---SPSIA-VEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPLIMEELSR  215 (282)
T ss_dssp             ------------SCCCCCSEEEECCCCC---CSCHH-HHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCSHHHHHHHHH
T ss_pred             ------------cCCCCcCEEEecCccC---CCChH-HHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCCccHHHHHHH
Confidence                        1457899999997432   23210 01223334577788999999  999999988633446778999


Q ss_pred             HHHhcCccEEEee
Q 038592          421 FRDVFQELYEIDV  433 (478)
Q Consensus       421 l~~vF~~v~~~~v  433 (478)
                      |++.|..|...+.
T Consensus       216 lk~~F~~V~~~KP  228 (282)
T 3gcz_A          216 LQLKHGGGLVRVP  228 (282)
T ss_dssp             HHHHHCCEEECCT
T ss_pred             HHHhcCCEEEEcC
Confidence            9999999887764

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=96.50  E-value=0.0025  Score=65.09  Aligned_cols=58  Identities=17%  Similarity=0.171  Sum_probs=51.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHH
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEF  323 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~  323 (478)
                      ...||.||-|.|+|+..|.+.. ..+|++||+|+..+..-++.+.   .++++++.+|+++|
T Consensus        59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~---~~~l~ii~~D~l~~  117 (353)
T 1i4w_A           59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE---GSPLQILKRDPYDW  117 (353)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT---TSSCEEECSCTTCH
T ss_pred             CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhcc---CCCEEEEECCccch
Confidence            3689999999999999999864 4699999999999999888762   57899999999877

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=95.82  E-value=0.027  Score=57.07  Aligned_cols=79  Identities=20%  Similarity=0.254  Sum_probs=60.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ...++...+|+|+-+.+|.+.+  ..+|.++|.||+.++.|++ +   .++|++++.++..++.+-+...          
T Consensus        58 ggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~r-L---~~~Rv~lv~~nF~~l~~~L~~~----------  123 (347)
T 3tka_A           58 DGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKT-I---DDPRFSIIHGPFSALGEYVAER----------  123 (347)
T ss_dssp             TCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTT-C---CCTTEEEEESCGGGHHHHHHHT----------
T ss_pred             CCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHh-h---cCCcEEEEeCCHHHHHHHHHhc----------
Confidence            3578889999999999998875  4799999999999999953 3   3579999999887765443221          


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCC
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDS  369 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s  369 (478)
                                    .-..++|.|+.|+--
T Consensus       124 --------------g~~~~vDgILfDLGV  138 (347)
T 3tka_A          124 --------------DLIGKIDGILLDLGV  138 (347)
T ss_dssp             --------------TCTTCEEEEEEECSC
T ss_pred             --------------CCCCcccEEEECCcc
Confidence                          012369999999853

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=95.80  E-value=0.019  Score=63.54  Aligned_cols=61  Identities=23%  Similarity=0.239  Sum_probs=47.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhh-------------------------------------------CCCEEEEEECChHHHH
Q 038592          263 RPKALCVGVGGGALVSFLRTQ-------------------------------------------LDFEVVGVEMDEVVLR  299 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~-------------------------------------------~~~~V~~VEiDp~Vl~  299 (478)
                      ...+|..+||+|+++..+...                                           +..+|.++|+|+.+++
T Consensus       191 ~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av~  270 (703)
T 3v97_A          191 GTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVIQ  270 (703)
T ss_dssp             TSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHHH
T ss_pred             CCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHHH
Confidence            458999999999987665542                                           1258999999999999


Q ss_pred             HHHHhcCCC-CCCCeEEEEchHHHH
Q 038592          300 VARQYFGLE-DGEFLQVSVGDAIEF  323 (478)
Q Consensus       300 vA~~~Fg~~-~d~rl~v~v~Dg~~~  323 (478)
                      .|++..... -+.++++..+|+.++
T Consensus       271 ~A~~N~~~agv~~~i~~~~~D~~~~  295 (703)
T 3v97_A          271 RARTNARLAGIGELITFEVKDVAQL  295 (703)
T ss_dssp             HHHHHHHHTTCGGGEEEEECCGGGC
T ss_pred             HHHHHHHHcCCCCceEEEECChhhC
Confidence            999875322 234689999999875

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=95.46  E-value=0.077  Score=51.70  Aligned_cols=125  Identities=20%  Similarity=0.174  Sum_probs=81.7

Q ss_pred             CCCeEEEEeCchhHHHHHHHhh--------CCCEEEEEE-----CCh-----------------------HHHHHHH--H
Q 038592          262 FRPKALCVGVGGGALVSFLRTQ--------LDFEVVGVE-----MDE-----------------------VVLRVAR--Q  303 (478)
Q Consensus       262 ~~~~VLvIGlGgG~L~~~L~~~--------~~~~V~~VE-----iDp-----------------------~Vl~vA~--~  303 (478)
                      -|..++.+|+--|....++.+.        .+.+|.+.|     -++                       .+-++.+  +
T Consensus        69 vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~  148 (257)
T 3tos_A           69 VPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHE  148 (257)
T ss_dssp             SCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHH
T ss_pred             CCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHh
Confidence            4789999999988766664432        236888887     221                       1222211  1


Q ss_pred             h---cCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCC
Q 038592          304 Y---FGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPP  380 (478)
Q Consensus       304 ~---Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp  380 (478)
                      .   ++.. +++++++.||+.+.+.+...+                        .+..++|+|++|+|.-.         
T Consensus       149 ~~~~~g~~-~~~i~li~G~~~dTL~~~l~~------------------------~~~~~~dlv~ID~D~Y~---------  194 (257)
T 3tos_A          149 CSDFFGHV-TQRSVLVEGDVRETVPRYLAE------------------------NPQTVIALAYFDLDLYE---------  194 (257)
T ss_dssp             TTSTTTTS-CCSEEEEESCHHHHHHHHHHH------------------------CTTCCEEEEEECCCCHH---------
T ss_pred             hhhhcCCC-CCcEEEEEecHHHHHHHHHHh------------------------CCCCceEEEEEcCcccc---------
Confidence            2   3322 478999999999998875432                        14567999999986311         


Q ss_pred             CCCChHHHHHHHHHccCcCcEEEE-EeCCCCchHHHHHHHHHHHhcC
Q 038592          381 VEFVRKDVLLAARLILSDFGIFVM-NVIPPNRSFYDMLIQEFRDVFQ  426 (478)
Q Consensus       381 ~~f~~~efl~~~~~~L~~~Gilv~-N~~~~~~~~~~~v~~~l~~vF~  426 (478)
                         -+...|+.+..+|++||++++ |...+.  + ..+.+.+.+.+.
T Consensus       195 ---~t~~~le~~~p~l~~GGvIv~DD~~~~~--w-~G~~~A~~ef~~  235 (257)
T 3tos_A          195 ---PTKAVLEAIRPYLTKGSIVAFDELDNPK--W-PGENIAMRKVLG  235 (257)
T ss_dssp             ---HHHHHHHHHGGGEEEEEEEEESSTTCTT--C-THHHHHHHHHTC
T ss_pred             ---hHHHHHHHHHHHhCCCcEEEEcCCCCCC--C-hHHHHHHHHHHh
Confidence               246789999999999999998 442221  1 134555666665

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=95.41  E-value=0.15  Score=51.10  Aligned_cols=95  Identities=17%  Similarity=0.114  Sum_probs=65.8

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCCE-EEEEECChHHHHHHHHhcCCCCCCCeEEEE-----chHHHHHHHHHhhhcCCC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDFE-VVGVEMDEVVLRVARQYFGLEDGEFLQVSV-----GDAIEFLEKLARQIVGKN  335 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~~-V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v-----~Dg~~~l~~~~~~~~~~~  335 (478)
                      ..+|||+|.|+ |.++..+.+..+.+ |.+++.+++-.+.|++. +   +.-+...+     .|..+.+++..       
T Consensus       180 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~---~~~~~~~~~~~~~~~~~~~v~~~t-------  248 (363)
T 3m6i_A          180 GDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-C---PEVVTHKVERLSAEESAKKIVESF-------  248 (363)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-C---TTCEEEECCSCCHHHHHHHHHHHT-------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-c---hhcccccccccchHHHHHHHHHHh-------
Confidence            56899999875 66777777777876 99999999999999987 4   22233322     23333343321       


Q ss_pred             CCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          336 PDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                          ....+|+||--+  +              ....++.+.+.|+++|.+++
T Consensus       249 --------------------~g~g~Dvvid~~--g--------------~~~~~~~~~~~l~~~G~iv~  281 (363)
T 3m6i_A          249 --------------------GGIEPAVALECT--G--------------VESSIAAAIWAVKFGGKVFV  281 (363)
T ss_dssp             --------------------SSCCCSEEEECS--C--------------CHHHHHHHHHHSCTTCEEEE
T ss_pred             --------------------CCCCCCEEEECC--C--------------ChHHHHHHHHHhcCCCEEEE
Confidence                                245799988621  1              14578889999999999885

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=95.26  E-value=0.044  Score=54.55  Aligned_cols=120  Identities=16%  Similarity=0.165  Sum_probs=78.7

Q ss_pred             CCeEEEEeCc------hhHHHHHHHhhC-C-CEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCC
Q 038592          263 RPKALCVGVG------GGALVSFLRTQL-D-FEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGK  334 (478)
Q Consensus       263 ~~~VLvIGlG------gG~L~~~L~~~~-~-~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~  334 (478)
                      ..+||.+|.|      -|+  ..+++.. . ..|++|||.|-+.           +.. ..+.+|..++           
T Consensus       110 gmrVLDLGA~s~kg~APGS--~VLr~~~p~g~~VVavDL~~~~s-----------da~-~~IqGD~~~~-----------  164 (344)
T 3r24_A          110 NMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFVS-----------DAD-STLIGDCATV-----------  164 (344)
T ss_dssp             TCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCBC-----------SSS-EEEESCGGGE-----------
T ss_pred             CCEEEeCCCCCCCCCCCcH--HHHHHhCCCCcEEEEeeCccccc-----------CCC-eEEEcccccc-----------
Confidence            4699999974      344  2444444 3 5999999988652           222 4489995432           


Q ss_pred             CCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCC-CCCC--CCCChHHHHHHHHHccCcCcEEEEEeCCCCc
Q 038592          335 NPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGT-SAPP--VEFVRKDVLLAARLILSDFGIFVMNVIPPNR  411 (478)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~-s~Pp--~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~  411 (478)
                                          ....+||+||.|.....  .|. ..+.  ..-+-+..+.-+++.|++||-|++=+.--..
T Consensus       165 --------------------~~~~k~DLVISDMAPNt--TG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg  222 (344)
T 3r24_A          165 --------------------HTANKWDLIISDMYDPR--TKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW  222 (344)
T ss_dssp             --------------------EESSCEEEEEECCCCTT--SCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC
T ss_pred             --------------------ccCCCCCEEEecCCCCc--CCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCC
Confidence                                13577999999986432  243 2121  1235677888899999999999997754322


Q ss_pred             hHHHHHHHHHHHhcCccEEEe
Q 038592          412 SFYDMLIQEFRDVFQELYEID  432 (478)
Q Consensus       412 ~~~~~v~~~l~~vF~~v~~~~  432 (478)
                      .   ..+..+++.|..+..++
T Consensus       223 ~---~~L~~lrk~F~~VK~fK  240 (344)
T 3r24_A          223 N---ADLYKLMGHFSWWTAFV  240 (344)
T ss_dssp             C---HHHHHHHTTEEEEEEEE
T ss_pred             H---HHHHHHHhhCCeEEEEC
Confidence            1   23555778999887775

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=95.06  E-value=0.051  Score=54.05  Aligned_cols=95  Identities=20%  Similarity=0.320  Sum_probs=66.3

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+|||+|.|+ |.++..+.+..+.+|.+++.+++-.+.+++ +|..  .-+.....|..+.+.+ .             
T Consensus       167 g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~-lGa~--~~i~~~~~~~~~~~~~-~-------------  229 (340)
T 3s2e_A          167 GQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARR-LGAE--VAVNARDTDPAAWLQK-E-------------  229 (340)
T ss_dssp             TSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-TTCS--EEEETTTSCHHHHHHH-H-------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-cCCC--EEEeCCCcCHHHHHHH-h-------------
Confidence            46899999875 777777777778899999999999999977 4532  1111111345555544 1             


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                    .+ .+|+|+..+-                ..+.++.+.+.|+++|.+++-
T Consensus       230 --------------~g-~~d~vid~~g----------------~~~~~~~~~~~l~~~G~iv~~  262 (340)
T 3s2e_A          230 --------------IG-GAHGVLVTAV----------------SPKAFSQAIGMVRRGGTIALN  262 (340)
T ss_dssp             --------------HS-SEEEEEESSC----------------CHHHHHHHHHHEEEEEEEEEC
T ss_pred             --------------CC-CCCEEEEeCC----------------CHHHHHHHHHHhccCCEEEEe
Confidence                          12 6999976321                256788899999999998853

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=94.97  E-value=0.013  Score=52.61  Aligned_cols=37  Identities=14%  Similarity=0.209  Sum_probs=33.0

Q ss_pred             CCeEEEEeCchh-HHHHHHHhhCCCEEEEEECChHHHH
Q 038592          263 RPKALCVGVGGG-ALVSFLRTQLDFEVVGVEMDEVVLR  299 (478)
Q Consensus       263 ~~~VLvIGlGgG-~L~~~L~~~~~~~V~~VEiDp~Vl~  299 (478)
                      +.+||.||+|.| -.+.+|.+..+++|+++||+|.-++
T Consensus        36 ~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~   73 (153)
T 2k4m_A           36 GTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG   73 (153)
T ss_dssp             SSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT
T ss_pred             CCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc
Confidence            469999999999 5999999877899999999998766

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=94.96  E-value=0.063  Score=53.37  Aligned_cols=142  Identities=17%  Similarity=0.161  Sum_probs=89.9

Q ss_pred             CeEEEEeCchhHHHHHHHhhCC-CEEEEEECChHHHHHH--HHhcCCCCCCCeEEEEc-hHHHHHHHHHhhhcCCCCCCC
Q 038592          264 PKALCVGVGGGALVSFLRTQLD-FEVVGVEMDEVVLRVA--RQYFGLEDGEFLQVSVG-DAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       264 ~~VLvIGlGgG~L~~~L~~~~~-~~V~~VEiDp~Vl~vA--~~~Fg~~~d~rl~v~v~-Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      .+||.||++.|+...++....+ .+|.+||+-..=-+.-  .+-++   -+-++++.+ |.. ++               
T Consensus        96 ~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~---w~lV~~~~~~Dv~-~l---------------  156 (321)
T 3lkz_A           96 GKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYG---WNIVTMKSGVDVF-YR---------------  156 (321)
T ss_dssp             EEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTT---GGGEEEECSCCTT-SS---------------
T ss_pred             CEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcC---CcceEEEeccCHh-hC---------------
Confidence            4999999999999998887766 4799999865411000  00011   012444444 432 21               


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC---ChHHHHHHHHHccCcC-cEEEEEeCCCCchHHH
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF---VRKDVLLAARLILSDF-GIFVMNVIPPNRSFYD  415 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f---~~~efl~~~~~~L~~~-Gilv~N~~~~~~~~~~  415 (478)
                                      ...++|+|++|+-.+.+       .+..   -+-..|+.+.+.|+++ |-|++=+.++-..-..
T Consensus       157 ----------------~~~~~D~ivcDigeSs~-------~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY~~~v~  213 (321)
T 3lkz_A          157 ----------------PSECCDTLLCDIGESSS-------SAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYMPKVI  213 (321)
T ss_dssp             ----------------CCCCCSEEEECCCCCCS-------CHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTSHHHH
T ss_pred             ----------------CCCCCCEEEEECccCCC-------ChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCCChHHH
Confidence                            33669999999964332       2221   2234778888999988 9999999888444455


Q ss_pred             HHHHHHHHhcCccEEEe--ecccceEEEEEEcCC
Q 038592          416 MLIQEFRDVFQELYEID--VGNEENFVLIATGLS  447 (478)
Q Consensus       416 ~v~~~l~~vF~~v~~~~--v~~~~N~Vl~a~~~~  447 (478)
                      ..++.|+..|..+....  ..+.-.++++.+...
T Consensus       214 e~l~~lq~~fgg~lvr~P~SRnst~EmY~vsGa~  247 (321)
T 3lkz_A          214 EKMELLQRRYGGGLVRNPLSRNSTHEMYWVSRAS  247 (321)
T ss_dssp             HHHHHHHHHHCCEEECCTTSCTTCCCEEEETTCC
T ss_pred             HHHHHHHHHhCCEeEeCCCCCCCcceEEEEecCC
Confidence            67899999999765443  234445666665443

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=94.77  E-value=0.34  Score=48.46  Aligned_cols=95  Identities=21%  Similarity=0.256  Sum_probs=63.7

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCCCCCCCeEEEEch---HHHHHHHHHhhhcCCCCC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGD---AIEFLEKLARQIVGKNPD  337 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~D---g~~~l~~~~~~~~~~~~~  337 (478)
                      ..+|||+|.|+ |.++..+.+..+. +|.+++.+++-.+.|++ +|..     .++..+   .-++.+++...       
T Consensus       172 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~-lGa~-----~vi~~~~~~~~~~~~~i~~~-------  238 (356)
T 1pl8_A          172 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE-IGAD-----LVLQISKESPQEIARKVEGQ-------  238 (356)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH-TTCS-----EEEECSSCCHHHHHHHHHHH-------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-hCCC-----EEEcCcccccchHHHHHHHH-------
Confidence            46999999875 6677677777787 99999999999999986 4532     222222   23343332211       


Q ss_pred             CCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          338 SFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                        ....+|+||--+       |         ....++.+.+.|+++|.+++
T Consensus       239 ------------------~~~g~D~vid~~-------g---------~~~~~~~~~~~l~~~G~iv~  271 (356)
T 1pl8_A          239 ------------------LGCKPEVTIECT-------G---------AEASIQAGIYATRSGGTLVL  271 (356)
T ss_dssp             ------------------HTSCCSEEEECS-------C---------CHHHHHHHHHHSCTTCEEEE
T ss_pred             ------------------hCCCCCEEEECC-------C---------ChHHHHHHHHHhcCCCEEEE
Confidence                              124699988621       1         14567888899999999885

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=94.74  E-value=0.082  Score=53.22  Aligned_cols=92  Identities=17%  Similarity=0.263  Sum_probs=63.6

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCCCCCCCeEEEE---chHHHHHHHHHhhhcCCCCC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGLEDGEFLQVSV---GDAIEFLEKLARQIVGKNPD  337 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v---~Dg~~~l~~~~~~~~~~~~~  337 (478)
                      ..+|||+|.|+ |.++..+.+..+. +|.+++.+++-++.|+++ |..     .++.   .|..+-+++.          
T Consensus       191 g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l-Ga~-----~vi~~~~~~~~~~~~~~----------  254 (371)
T 1f8f_A          191 ASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL-GAT-----HVINSKTQDPVAAIKEI----------  254 (371)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH-TCS-----EEEETTTSCHHHHHHHH----------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-CCC-----EEecCCccCHHHHHHHh----------
Confidence            46999999875 6666667666676 799999999999999765 531     1221   2444444442          


Q ss_pred             CCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          338 SFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                        ....+|+||--+  +              ..+.++.+.+.|+++|.+++
T Consensus       255 ------------------~~gg~D~vid~~--g--------------~~~~~~~~~~~l~~~G~iv~  287 (371)
T 1f8f_A          255 ------------------TDGGVNFALEST--G--------------SPEILKQGVDALGILGKIAV  287 (371)
T ss_dssp             ------------------TTSCEEEEEECS--C--------------CHHHHHHHHHTEEEEEEEEE
T ss_pred             ------------------cCCCCcEEEECC--C--------------CHHHHHHHHHHHhcCCEEEE
Confidence                              222799987521  1              14578889999999999875

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=94.68  E-value=0.042  Score=53.63  Aligned_cols=128  Identities=15%  Similarity=0.054  Sum_probs=79.6

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCCCCC-CCe---EEEEc-hHHHHHHHHHhhhcCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGLEDG-EFL---QVSVG-DAIEFLEKLARQIVGKNP  336 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~~~d-~rl---~v~v~-Dg~~~l~~~~~~~~~~~~  336 (478)
                      ..+|+.+|++-|+++.+..+..++ .|.+..+-... .    -...... +.+   ++..+ |..+.             
T Consensus        74 g~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~----~~P~~~~~~Gv~~i~~~~G~Df~~~-------------  135 (269)
T 2px2_A           74 IGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H----EEPMLMQSYGWNIVTMKSGVDVFYK-------------  135 (269)
T ss_dssp             CEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S----CCCCCCCSTTGGGEEEECSCCGGGS-------------
T ss_pred             CCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c----cCCCcccCCCceEEEeeccCCccCC-------------
Confidence            459999999999999999886433 43444333221 0    0011100 223   44435 76641             


Q ss_pred             CCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCc-EEEEEeCCCCchHHH
Q 038592          337 DSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFG-IFVMNVIPPNRSFYD  415 (478)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~G-ilv~N~~~~~~~~~~  415 (478)
                                         ...++|+|+.|+-..   +|... -.+.-+...|..+.+.|+||| -|++=+......-+.
T Consensus       136 -------------------~~~~~DvVLSDMAPn---SG~~~-vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~  192 (269)
T 2px2_A          136 -------------------PSEISDTLLCDIGES---SPSAE-IEEQRTLRILEMVSDWLSRGPKEFCIKILCPYMPKVI  192 (269)
T ss_dssp             -------------------CCCCCSEEEECCCCC---CSCHH-HHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHH
T ss_pred             -------------------CCCCCCEEEeCCCCC---CCccH-HHHHHHHHHHHHHHHHhhcCCcEEEEEECCCCchHHH
Confidence                               356799999997542   12210 011112236777889999999 999988876445566


Q ss_pred             HHHHHHHHhcCccEEE
Q 038592          416 MLIQEFRDVFQELYEI  431 (478)
Q Consensus       416 ~v~~~l~~vF~~v~~~  431 (478)
                      ..++.|++.|..+...
T Consensus       193 ~~l~~lk~~F~~vkvk  208 (269)
T 2px2_A          193 EKLESLQRRFGGGLVR  208 (269)
T ss_dssp             HHHHHHHHHHCCEEEC
T ss_pred             HHHHHHHHHcCCEEEE
Confidence            7789999999987743

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=94.47  E-value=0.19  Score=49.91  Aligned_cols=103  Identities=21%  Similarity=0.253  Sum_probs=65.9

Q ss_pred             CeEEEEeCc--hhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHH-HHHHHHhhhcCCCCCCC
Q 038592          264 PKALCVGVG--GGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIE-FLEKLARQIVGKNPDSF  339 (478)
Q Consensus       264 ~~VLvIGlG--gG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~-~l~~~~~~~~~~~~~~~  339 (478)
                      .+|.|||+|  |++++..|.+.- ..+|.++|.+++-++.+++. |...    + ...|..+ .                
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~-G~~~----~-~~~~~~~~~----------------   91 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL-GIID----E-GTTSIAKVE----------------   91 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT-TSCS----E-EESCTTGGG----------------
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHC-CCcc----h-hcCCHHHHh----------------
Confidence            689999999  677888887652 23999999999998888764 3210    0 1122211 1                


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHH
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQ  419 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~  419 (478)
                                       -...|+||+-+           |+.  ...++++.+...|+++.+ ++++.+-.....+.+.+
T Consensus        92 -----------------~~~aDvVilav-----------p~~--~~~~vl~~l~~~l~~~~i-v~d~~Svk~~~~~~~~~  140 (314)
T 3ggo_A           92 -----------------DFSPDFVMLSS-----------PVR--TFREIAKKLSYILSEDAT-VTDQGSVKGKLVYDLEN  140 (314)
T ss_dssp             -----------------GGCCSEEEECS-----------CGG--GHHHHHHHHHHHSCTTCE-EEECCSCCTHHHHHHHH
T ss_pred             -----------------hccCCEEEEeC-----------CHH--HHHHHHHHHhhccCCCcE-EEECCCCcHHHHHHHHH
Confidence                             12479999932           232  346788999999988665 45665554443343333

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=94.44  E-value=0.23  Score=49.19  Aligned_cols=98  Identities=15%  Similarity=0.167  Sum_probs=65.9

Q ss_pred             CCeEEEEeCchh-HHHHHHHhh-CCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGG-ALVSFLRTQ-LDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG-~L~~~L~~~-~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+|||+|.|++ .++..+.+. .+.+|.+++.+++-++.|++. |.  +.-+...-.|..+.+.+..            
T Consensus       164 g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~-Ga--~~~i~~~~~~~~~~v~~~t------------  228 (348)
T 4eez_A          164 GDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKI-GA--DVTINSGDVNPVDEIKKIT------------  228 (348)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHT-TC--SEEEEC-CCCHHHHHHHHT------------
T ss_pred             CCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhc-CC--eEEEeCCCCCHHHHhhhhc------------
Confidence            468999999864 344344443 478999999999999999875 32  2222333356666666531            


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                     ....+|+++.+.-                ..+.+..+.+.|+++|.+++--
T Consensus       229 ---------------~g~g~d~~~~~~~----------------~~~~~~~~~~~l~~~G~~v~~g  263 (348)
T 4eez_A          229 ---------------GGLGVQSAIVCAV----------------ARIAFEQAVASLKPMGKMVAVA  263 (348)
T ss_dssp             ---------------TSSCEEEEEECCS----------------CHHHHHHHHHTEEEEEEEEECC
T ss_pred             ---------------CCCCceEEEEecc----------------CcchhheeheeecCCceEEEEe
Confidence                           2445888887531                2567888889999999987643

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=94.42  E-value=0.077  Score=54.10  Aligned_cols=107  Identities=10%  Similarity=0.057  Sum_probs=65.5

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCCCCCCCeEEEEchH-HHHHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDA-IEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg-~~~l~~~~~~~~~~~~~~~  339 (478)
                      ..+|||+|.|+ |.++..+.+..+. +|.+++.+++-++.|++ +|.  + .+.....|. .+.+++..           
T Consensus       186 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~-lGa--~-~i~~~~~~~~~~~~~~~~-----------  250 (398)
T 2dph_A          186 GSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD-AGF--E-TIDLRNSAPLRDQIDQIL-----------  250 (398)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT-TTC--E-EEETTSSSCHHHHHHHHH-----------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH-cCC--c-EEcCCCcchHHHHHHHHh-----------
Confidence            46999999876 7777677776677 99999999999999976 453  1 111111233 44454421           


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCC--CCChHHHHHHHHHccCcCcEEEE
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPV--EFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~--~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                      ....+|+||--+.... . +.  ++.  +.-....++.+.+.|+++|.+++
T Consensus       251 ----------------~g~g~Dvvid~~g~~~-~-~~--~~~~~~~~~~~~~~~~~~~l~~gG~iv~  297 (398)
T 2dph_A          251 ----------------GKPEVDCGVDAVGFEA-H-GL--GDEANTETPNGALNSLFDVVRAGGAIGI  297 (398)
T ss_dssp             ----------------SSSCEEEEEECSCTTC-B-CS--GGGTTSBCTTHHHHHHHHHEEEEEEEEC
T ss_pred             ----------------CCCCCCEEEECCCCcc-c-cc--cccccccccHHHHHHHHHHHhcCCEEEE
Confidence                            2346999875321110 0 00  000  00123468888999999998874

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=94.41  E-value=0.089  Score=50.83  Aligned_cols=141  Identities=15%  Similarity=0.201  Sum_probs=93.4

Q ss_pred             CeEEEEeCchhHHHHHHHhhCC-CEEEEEECChHHHHHH--HHhcCCCCCCCeEEEEc-hHHHHHHHHHhhhcCCCCCCC
Q 038592          264 PKALCVGVGGGALVSFLRTQLD-FEVVGVEMDEVVLRVA--RQYFGLEDGEFLQVSVG-DAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       264 ~~VLvIGlGgG~L~~~L~~~~~-~~V~~VEiDp~Vl~vA--~~~Fg~~~d~rl~v~v~-Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      .+|+.||++.|+...++....+ .+|.+||+-+.=-+.-  .+-+|   -+-++++.+ |-. ++               
T Consensus        80 ~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~g---wn~v~fk~gvDv~-~~---------------  140 (267)
T 3p8z_A           80 GRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYG---WNIVKLMSGKDVF-YL---------------  140 (267)
T ss_dssp             EEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTT---TTSEEEECSCCGG-GC---------------
T ss_pred             CEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcC---cCceEEEecccee-ec---------------
Confidence            4899999999999998888765 4899999865422100  00011   255777777 652 11               


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC---ChHHHHHHHHHccCcCcEEEEEeCCCCchHHHH
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF---VRKDVLLAARLILSDFGIFVMNVIPPNRSFYDM  416 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f---~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~  416 (478)
                                      ...++|.|++|+--+.       |.+..   -+-..|+.+.+.|++ |-|++=+.++.......
T Consensus       141 ----------------~~~~~DtllcDIgeSs-------~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~p~v~e  196 (267)
T 3p8z_A          141 ----------------PPEKCDTLLCDIGESS-------PSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYMPTVIE  196 (267)
T ss_dssp             ----------------CCCCCSEEEECCCCCC-------SCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCSHHHHH
T ss_pred             ----------------CCccccEEEEecCCCC-------CChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCChhHHH
Confidence                            3467999999985432       22221   223477888899998 89999888885544446


Q ss_pred             HHHHHHHhcCccEEEe--ecccceEEEEEEcCC
Q 038592          417 LIQEFRDVFQELYEID--VGNEENFVLIATGLS  447 (478)
Q Consensus       417 v~~~l~~vF~~v~~~~--v~~~~N~Vl~a~~~~  447 (478)
                      .++.|+..|..+....  ..+.-.++.+.+...
T Consensus       197 ~l~~lq~~fgg~lVR~P~SRnsThEMY~Vsg~~  229 (267)
T 3p8z_A          197 HLERLQRKHGGMLVRNPLSRNSTHEMYWISNGT  229 (267)
T ss_dssp             HHHHHHHHHCCEEECCTTSCTTCCCEEEESSCC
T ss_pred             HHHHHHHHhCCEeEeCCCCCCCcceEEEEecCC
Confidence            7899999999765443  234455666665544

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=94.30  E-value=0.18  Score=43.54  Aligned_cols=52  Identities=29%  Similarity=0.378  Sum_probs=40.0

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHH
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIE  322 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~  322 (478)
                      ..+|+|+|+|  |..++..|.+ .+.+|+++|.|++.++.+++. |      +.++.+|+.+
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~-~g~~v~vid~~~~~~~~~~~~-g------~~~i~gd~~~   60 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLA-SDIPLVVIETSRTRVDELRER-G------VRAVLGNAAN   60 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHHHT-T------CEEEESCTTS
T ss_pred             CCCEEEECcCHHHHHHHHHHHH-CCCCEEEEECCHHHHHHHHHc-C------CCEEECCCCC
Confidence            4689999998  3446666665 368999999999999988762 3      5788888754

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=94.27  E-value=0.14  Score=52.46  Aligned_cols=53  Identities=17%  Similarity=0.121  Sum_probs=41.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHH
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEF  323 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~  323 (478)
                      ..+||.||.+-|+.+..|.+. +.+|++||+-|.--.+       ..+++++++.+|+..+
T Consensus       212 G~~vlDLGAaPGGWT~~l~~r-g~~V~aVD~~~l~~~l-------~~~~~V~~~~~d~~~~  264 (375)
T 4auk_A          212 GMWAVDLGACPGGWTYQLVKR-NMWVYSVDNGPMAQSL-------MDTGQVTWLREDGFKF  264 (375)
T ss_dssp             TCEEEEETCTTCHHHHHHHHT-TCEEEEECSSCCCHHH-------HTTTCEEEECSCTTTC
T ss_pred             CCEEEEeCcCCCHHHHHHHHC-CCEEEEEEhhhcChhh-------ccCCCeEEEeCccccc
Confidence            569999999999999998876 7899999965421111       1357899999999876

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=94.14  E-value=0.11  Score=51.83  Aligned_cols=96  Identities=17%  Similarity=0.231  Sum_probs=64.7

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+|||+|.|+ |.++..+.+..+. +|.+++.+++-++.|+++ |..  .-+.....|..+.+.+..            
T Consensus       167 g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l-Ga~--~vi~~~~~~~~~~v~~~t------------  231 (352)
T 3fpc_A          167 GDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEY-GAT--DIINYKNGDIVEQILKAT------------  231 (352)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHH-TCC--EEECGGGSCHHHHHHHHT------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh-CCc--eEEcCCCcCHHHHHHHHc------------
Confidence            56899999875 6677777777777 899999999999999875 532  101111134455554421            


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                     .+..+|+||- .- +.              .+.++.+.+.|+++|.+++
T Consensus       232 ---------------~g~g~D~v~d-~~-g~--------------~~~~~~~~~~l~~~G~~v~  264 (352)
T 3fpc_A          232 ---------------DGKGVDKVVI-AG-GD--------------VHTFAQAVKMIKPGSDIGN  264 (352)
T ss_dssp             ---------------TTCCEEEEEE-CS-SC--------------TTHHHHHHHHEEEEEEEEE
T ss_pred             ---------------CCCCCCEEEE-CC-CC--------------hHHHHHHHHHHhcCCEEEE
Confidence                           2446999975 21 10              2367888899999999874

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=94.11  E-value=0.14  Score=46.49  Aligned_cols=95  Identities=13%  Similarity=0.111  Sum_probs=57.7

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+|||+|++  .|.....+....+.+|.+++.+++-.+.+++ +|.  +..+.+...|..+.+.+..            
T Consensus        39 g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~-~g~--~~~~d~~~~~~~~~~~~~~------------  103 (198)
T 1pqw_A           39 GERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR-LGV--EYVGDSRSVDFADEILELT------------  103 (198)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT-TCC--SEEEETTCSTHHHHHHHHT------------
T ss_pred             CCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCC--CEEeeCCcHHHHHHHHHHh------------
Confidence            4689999953  3444433333447899999999999888866 343  1111111123344443321            


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                     ....+|+++.-+       |          .+.++.+.+.|+++|.+++
T Consensus       104 ---------------~~~~~D~vi~~~-------g----------~~~~~~~~~~l~~~G~~v~  135 (198)
T 1pqw_A          104 ---------------DGYGVDVVLNSL-------A----------GEAIQRGVQILAPGGRFIE  135 (198)
T ss_dssp             ---------------TTCCEEEEEECC-------C----------THHHHHHHHTEEEEEEEEE
T ss_pred             ---------------CCCCCeEEEECC-------c----------hHHHHHHHHHhccCCEEEE
Confidence                           234699998521       1          1367888899999998774

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=94.09  E-value=0.28  Score=48.72  Aligned_cols=93  Identities=17%  Similarity=0.284  Sum_probs=63.1

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchH-HHHHHHHHhhhcCCCCCC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDA-IEFLEKLARQIVGKNPDS  338 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg-~~~l~~~~~~~~~~~~~~  338 (478)
                      ..+|||+|+|+ |.++..+.+..  +.+|.+++.+++-.+.+++ +|..     .++..+- .++++++.          
T Consensus       171 g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~-lGa~-----~vi~~~~~~~~~~~~~----------  234 (344)
T 2h6e_A          171 EPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALE-LGAD-----YVSEMKDAESLINKLT----------  234 (344)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH-HTCS-----EEECHHHHHHHHHHHH----------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH-hCCC-----EEeccccchHHHHHhh----------
Confidence            46999999874 66666666666  8899999999999999987 4531     2222111 23444421          


Q ss_pred             CCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          339 FGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                       ....+|+||--+       |         ..+.++.+.+.|+++|.+++
T Consensus       235 -----------------~g~g~D~vid~~-------g---------~~~~~~~~~~~l~~~G~iv~  267 (344)
T 2h6e_A          235 -----------------DGLGASIAIDLV-------G---------TEETTYNLGKLLAQEGAIIL  267 (344)
T ss_dssp             -----------------TTCCEEEEEESS-------C---------CHHHHHHHHHHEEEEEEEEE
T ss_pred             -----------------cCCCccEEEECC-------C---------ChHHHHHHHHHhhcCCEEEE
Confidence                             234699998621       1         13478888999999998875

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=93.57  E-value=0.17  Score=48.68  Aligned_cols=63  Identities=10%  Similarity=0.084  Sum_probs=42.6

Q ss_pred             CeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC--------
Q 038592          312 FLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF--------  383 (478)
Q Consensus       312 rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f--------  383 (478)
                      ..+++.+|++++++.+                            .+.++|+|++|.-=.  . +.. --..+        
T Consensus         4 ~~~l~~gD~~~~l~~l----------------------------~~~~vdlI~~DPPY~--~-~~~-~~d~~~~~~~y~~   51 (260)
T 1g60_A            4 INKIHQMNCFDFLDQV----------------------------ENKSVQLAVIDPPYN--L-SKA-DWDSFDSHNEFLA   51 (260)
T ss_dssp             SSSEEECCHHHHHHHS----------------------------CTTCEEEEEECCCCS--S-CSS-GGGCCSSHHHHHH
T ss_pred             cCeEEechHHHHHHhc----------------------------cccccCEEEECCCCC--C-Ccc-cccccCCHHHHHH
Confidence            3468999999999763                            456899999974211  0 000 00011        


Q ss_pred             ChHHHHHHHHHccCcCcEEEEEe
Q 038592          384 VRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       384 ~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                      .-..++..++++|+++|.++++.
T Consensus        52 ~~~~~l~~~~~~Lk~~g~i~v~~   74 (260)
T 1g60_A           52 FTYRWIDKVLDKLDKDGSLYIFN   74 (260)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhcCCeEEEEEc
Confidence            23567788899999999999876

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=93.56  E-value=0.34  Score=48.23  Aligned_cols=97  Identities=16%  Similarity=0.191  Sum_probs=63.0

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEE---chHHHHHHHHHhhhcCCCCCC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSV---GDAIEFLEKLARQIVGKNPDS  338 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v---~Dg~~~l~~~~~~~~~~~~~~  338 (478)
                      ..+|||+|.|+ |.++..+.+..+.+|.+++.+++-.+.+++ +|..    ..+-.   .|..+-+.+....        
T Consensus       169 g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~-lGa~----~~~~~~~~~~~~~~i~~~~~~--------  235 (352)
T 1e3j_A          169 GTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN-CGAD----VTLVVDPAKEEESSIIERIRS--------  235 (352)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-TTCS----EEEECCTTTSCHHHHHHHHHH--------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH-hCCC----EEEcCcccccHHHHHHHHhcc--------
Confidence            46999999874 666666666778889999999999999986 4532    11111   2334444332100        


Q ss_pred             CCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          339 FGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                      .....+|+||--+  +              ....++.+.+.|+++|.+++
T Consensus       236 ----------------~~g~g~D~vid~~--g--------------~~~~~~~~~~~l~~~G~iv~  269 (352)
T 1e3j_A          236 ----------------AIGDLPNVTIDCS--G--------------NEKCITIGINITRTGGTLML  269 (352)
T ss_dssp             ----------------HSSSCCSEEEECS--C--------------CHHHHHHHHHHSCTTCEEEE
T ss_pred             ----------------ccCCCCCEEEECC--C--------------CHHHHHHHHHHHhcCCEEEE
Confidence                            0024699987621  1              13467888899999999875

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=93.53  E-value=0.79  Score=46.43  Aligned_cols=108  Identities=19%  Similarity=0.191  Sum_probs=70.0

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+|.+||+|  |..++..|.+. +.+|.+++.+++.++.+.+. |..       ...|..+.++.              
T Consensus        22 ~mkIgiIGlG~mG~~~A~~L~~~-G~~V~v~dr~~~~~~~l~~~-g~~-------~~~s~~e~~~~--------------   78 (358)
T 4e21_A           22 SMQIGMIGLGRMGADMVRRLRKG-GHECVVYDLNVNAVQALERE-GIA-------GARSIEEFCAK--------------   78 (358)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHTT-TCB-------CCSSHHHHHHH--------------
T ss_pred             CCEEEEECchHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHC-CCE-------EeCCHHHHHhc--------------
Confidence            3689999999  45566666654 68999999999988776543 221       12345555443              


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHH
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQE  420 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~  420 (478)
                                      ....|+||+-+            |.. ...+.+..+...|+++- ++++..+........+.+.
T Consensus        79 ----------------a~~~DvVi~~v------------p~~-~v~~vl~~l~~~l~~g~-iiId~st~~~~~~~~~~~~  128 (358)
T 4e21_A           79 ----------------LVKPRVVWLMV------------PAA-VVDSMLQRMTPLLAAND-IVIDGGNSHYQDDIRRADQ  128 (358)
T ss_dssp             ----------------SCSSCEEEECS------------CGG-GHHHHHHHHGGGCCTTC-EEEECSSCCHHHHHHHHHH
T ss_pred             ----------------CCCCCEEEEeC------------CHH-HHHHHHHHHHhhCCCCC-EEEeCCCCChHHHHHHHHH
Confidence                            23479999933            333 55778888888888754 5557766654444445555


Q ss_pred             HHH
Q 038592          421 FRD  423 (478)
Q Consensus       421 l~~  423 (478)
                      +++
T Consensus       129 l~~  131 (358)
T 4e21_A          129 MRA  131 (358)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            544

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=93.52  E-value=0.53  Score=47.17  Aligned_cols=93  Identities=17%  Similarity=0.072  Sum_probs=63.7

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEE---chHHHHHHHHHhhhcCCCCCC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSV---GDAIEFLEKLARQIVGKNPDS  338 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v---~Dg~~~l~~~~~~~~~~~~~~  338 (478)
                      ..+|||+|.|+ |.++..+.+..+.+|.+++.+++-++.|+++ |..     .++.   .|..+.+++..          
T Consensus       190 g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l-Ga~-----~vi~~~~~~~~~~v~~~~----------  253 (363)
T 3uog_A          190 GDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFAL-GAD-----HGINRLEEDWVERVYALT----------  253 (363)
T ss_dssp             TCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-TCS-----EEEETTTSCHHHHHHHHH----------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHc-CCC-----EEEcCCcccHHHHHHHHh----------
Confidence            46999999775 6666667777788999999999999999774 531     1222   24445554432          


Q ss_pred             CCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592          339 FGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                       .+..+|+||--+.  .               +.++.+.+.|+++|.+++-
T Consensus       254 -----------------~g~g~D~vid~~g--~---------------~~~~~~~~~l~~~G~iv~~  286 (363)
T 3uog_A          254 -----------------GDRGADHILEIAG--G---------------AGLGQSLKAVAPDGRISVI  286 (363)
T ss_dssp             -----------------TTCCEEEEEEETT--S---------------SCHHHHHHHEEEEEEEEEE
T ss_pred             -----------------CCCCceEEEECCC--h---------------HHHHHHHHHhhcCCEEEEE
Confidence                             3446998876321  0               1356677899999988853

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=93.40  E-value=0.19  Score=51.68  Aligned_cols=26  Identities=15%  Similarity=0.082  Sum_probs=21.8

Q ss_pred             HHHHHHHHccCcCcEEEEEeCCCCch
Q 038592          387 DVLLAARLILSDFGIFVMNVIPPNRS  412 (478)
Q Consensus       387 efl~~~~~~L~~~Gilv~N~~~~~~~  412 (478)
                      .||+..++.|+|||.+++.+.++...
T Consensus       206 ~FL~~Ra~eL~pGG~mvl~~~gr~~~  231 (384)
T 2efj_A          206 TFLRIHSEELISRGRMLLTFICKEDE  231 (384)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEECCCTT
T ss_pred             HHHHHHHHHhccCCeEEEEEecCCCc
Confidence            35888899999999999999887443

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=93.39  E-value=0.88  Score=45.60  Aligned_cols=92  Identities=16%  Similarity=0.157  Sum_probs=63.0

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCCCCCCCeEEEE-----chHHHHHHHHHhhhcCCC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGLEDGEFLQVSV-----GDAIEFLEKLARQIVGKN  335 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v-----~Dg~~~l~~~~~~~~~~~  335 (478)
                      ..+|||+|.|+ |.++..+.+..+. +|.+++.+++-.+.|++ +|..     .++.     .|..+.+++.        
T Consensus       192 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~-lGa~-----~vi~~~~~~~~~~~~i~~~--------  257 (373)
T 1p0f_A          192 GSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE-LGAT-----ECLNPKDYDKPIYEVICEK--------  257 (373)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH-TTCS-----EEECGGGCSSCHHHHHHHH--------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH-cCCc-----EEEecccccchHHHHHHHH--------
Confidence            46999999764 6666666666676 89999999999999976 4542     1221     2344445442        


Q ss_pred             CCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcC-cEEEE
Q 038592          336 PDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDF-GIFVM  404 (478)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~-Gilv~  404 (478)
                                          ....+|+||--+       |         ..+.++.+.+.|+++ |.+++
T Consensus       258 --------------------t~gg~Dvvid~~-------g---------~~~~~~~~~~~l~~~~G~iv~  291 (373)
T 1p0f_A          258 --------------------TNGGVDYAVECA-------G---------RIETMMNALQSTYCGSGVTVV  291 (373)
T ss_dssp             --------------------TTSCBSEEEECS-------C---------CHHHHHHHHHTBCTTTCEEEE
T ss_pred             --------------------hCCCCCEEEECC-------C---------CHHHHHHHHHHHhcCCCEEEE
Confidence                                223799988511       1         145788899999999 98875

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=93.37  E-value=0.88  Score=45.60  Aligned_cols=92  Identities=16%  Similarity=0.216  Sum_probs=63.1

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCCCCCCCeEEE-E----chHHHHHHHHHhhhcCCC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGLEDGEFLQVS-V----GDAIEFLEKLARQIVGKN  335 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~-v----~Dg~~~l~~~~~~~~~~~  335 (478)
                      ..+|||+|.|+ |.++..+.+..+. +|.+++.+++-++.|++ +|..     .++ .    .|..+.+++..       
T Consensus       193 g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~-lGa~-----~vi~~~~~~~~~~~~~~~~~-------  259 (374)
T 1cdo_A          193 GSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV-FGAT-----DFVNPNDHSEPISQVLSKMT-------  259 (374)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH-TTCC-----EEECGGGCSSCHHHHHHHHH-------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH-hCCc-----eEEeccccchhHHHHHHHHh-------
Confidence            46899999764 6666667777777 89999999999999986 4542     111 1    23444454421       


Q ss_pred             CCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcC-cEEEE
Q 038592          336 PDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDF-GIFVM  404 (478)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~-Gilv~  404 (478)
                                           ...+|+||--+       |         ..+.++.+.+.|+++ |.+++
T Consensus       260 ---------------------~~g~D~vid~~-------g---------~~~~~~~~~~~l~~~~G~iv~  292 (374)
T 1cdo_A          260 ---------------------NGGVDFSLECV-------G---------NVGVMRNALESCLKGWGVSVL  292 (374)
T ss_dssp             ---------------------TSCBSEEEECS-------C---------CHHHHHHHHHTBCTTTCEEEE
T ss_pred             ---------------------CCCCCEEEECC-------C---------CHHHHHHHHHHhhcCCcEEEE
Confidence                                 23699988511       1         145788899999999 98875

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=93.35  E-value=0.2  Score=50.05  Aligned_cols=71  Identities=23%  Similarity=0.193  Sum_probs=46.6

Q ss_pred             CCCeEEE-EchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC--ChH
Q 038592          310 GEFLQVS-VGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF--VRK  386 (478)
Q Consensus       310 d~rl~v~-v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f--~~~  386 (478)
                      +...+++ .+|++++++.+                            .+.++|+|++|.-=....+.... ...+  .-.
T Consensus        36 ~~~~~l~i~gD~l~~L~~l----------------------------~~~svDlI~tDPPY~~~~d~~~~-~~~~~~~~~   86 (319)
T 1eg2_A           36 GTTRHVYDVCDCLDTLAKL----------------------------PDDSVQLIICDPPYNIMLADWDD-HMDYIGWAK   86 (319)
T ss_dssp             CCEEEEEEECCHHHHHHTS----------------------------CTTCEEEEEECCCSBCCGGGGGT-CSSHHHHHH
T ss_pred             cccceEEECCcHHHHHHhC----------------------------ccCCcCEEEECCCCCCCCCCccC-HHHHHHHHH
Confidence            4567888 99999998652                            45689999997421100000000 1122  235


Q ss_pred             HHHHHHHHccCcCcEEEEEeCCC
Q 038592          387 DVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       387 efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                      +.|..++++|+|+|.++++...+
T Consensus        87 ~~l~~~~rvLk~~G~i~i~~~~~  109 (319)
T 1eg2_A           87 RWLAEAERVLSPTGSIAIFGGLQ  109 (319)
T ss_dssp             HHHHHHHHHEEEEEEEEEEECSC
T ss_pred             HHHHHHHHHcCCCeEEEEEcCcc
Confidence            67788899999999999987655

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=93.28  E-value=1.1  Score=44.86  Aligned_cols=92  Identities=20%  Similarity=0.315  Sum_probs=62.9

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCCCCCCCeEEE-E----chHHHHHHHHHhhhcCCC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGLEDGEFLQVS-V----GDAIEFLEKLARQIVGKN  335 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~-v----~Dg~~~l~~~~~~~~~~~  335 (478)
                      ..+|||+|.|+ |.++..+.+..+. +|.+++.+++-++.|++ +|..     .++ .    .|..+.+++.        
T Consensus       192 g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~-lGa~-----~vi~~~~~~~~~~~~~~~~--------  257 (374)
T 2jhf_A          192 GSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE-VGAT-----ECVNPQDYKKPIQEVLTEM--------  257 (374)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH-TTCS-----EEECGGGCSSCHHHHHHHH--------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-hCCc-----eEecccccchhHHHHHHHH--------
Confidence            46999999774 6666667777777 89999999999999976 4542     122 1    2344445442        


Q ss_pred             CCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcC-cEEEE
Q 038592          336 PDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDF-GIFVM  404 (478)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~-Gilv~  404 (478)
                                          ....+|+||--+  +              ..+.++.+.+.|+++ |.+++
T Consensus       258 --------------------~~~g~D~vid~~--g--------------~~~~~~~~~~~l~~~~G~iv~  291 (374)
T 2jhf_A          258 --------------------SNGGVDFSFEVI--G--------------RLDTMVTALSCCQEAYGVSVI  291 (374)
T ss_dssp             --------------------TTSCBSEEEECS--C--------------CHHHHHHHHHHBCTTTCEEEE
T ss_pred             --------------------hCCCCcEEEECC--C--------------CHHHHHHHHHHhhcCCcEEEE
Confidence                                223699987511  1              145788889999999 98875

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=93.24  E-value=0.34  Score=48.85  Aligned_cols=95  Identities=22%  Similarity=0.297  Sum_probs=64.2

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCCCCCCCeEEE--EchHHHHHHHHHhhhcCCCCCC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGLEDGEFLQVS--VGDAIEFLEKLARQIVGKNPDS  338 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~--v~Dg~~~l~~~~~~~~~~~~~~  338 (478)
                      ..+|||+|.|+ |.++..+.+..+. +|.+++.+++-++.|++ +|..  .-+...  ..|..+.+++.           
T Consensus       194 g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~-lGa~--~vi~~~~~~~~~~~~i~~~-----------  259 (378)
T 3uko_A          194 GSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK-FGVN--EFVNPKDHDKPIQEVIVDL-----------  259 (378)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT-TTCC--EEECGGGCSSCHHHHHHHH-----------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-cCCc--EEEccccCchhHHHHHHHh-----------
Confidence            46899999864 6666666666676 89999999999999976 4542  100000  13445555553           


Q ss_pred             CCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcC-cEEEE
Q 038592          339 FGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDF-GIFVM  404 (478)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~-Gilv~  404 (478)
                                       ....+|+||--+  +              ..+.++.+.+.|+++ |.+++
T Consensus       260 -----------------~~gg~D~vid~~--g--------------~~~~~~~~~~~l~~g~G~iv~  293 (378)
T 3uko_A          260 -----------------TDGGVDYSFECI--G--------------NVSVMRAALECCHKGWGTSVI  293 (378)
T ss_dssp             -----------------TTSCBSEEEECS--C--------------CHHHHHHHHHTBCTTTCEEEE
T ss_pred             -----------------cCCCCCEEEECC--C--------------CHHHHHHHHHHhhccCCEEEE
Confidence                             223799988621  1              146788899999996 98875

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=93.21  E-value=1  Score=45.09  Aligned_cols=92  Identities=21%  Similarity=0.269  Sum_probs=62.6

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCCCCCCCeEEE-E----chHHHHHHHHHhhhcCCC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGLEDGEFLQVS-V----GDAIEFLEKLARQIVGKN  335 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~-v----~Dg~~~l~~~~~~~~~~~  335 (478)
                      ..+|||+|.|+ |.++..+.+..+. +|.+++.+++-.+.|+++ |..     .++ .    .|..+.+++.        
T Consensus       191 g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~l-Ga~-----~vi~~~~~~~~~~~~v~~~--------  256 (373)
T 2fzw_A          191 GSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF-GAT-----ECINPQDFSKPIQEVLIEM--------  256 (373)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH-TCS-----EEECGGGCSSCHHHHHHHH--------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CCc-----eEeccccccccHHHHHHHH--------
Confidence            46899999764 5666666666677 899999999999999864 542     121 1    2344445442        


Q ss_pred             CCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcC-cEEEE
Q 038592          336 PDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDF-GIFVM  404 (478)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~-Gilv~  404 (478)
                                          ....+|+||--+       |         ..+.++.+.+.|+++ |.+++
T Consensus       257 --------------------~~~g~D~vid~~-------g---------~~~~~~~~~~~l~~~~G~iv~  290 (373)
T 2fzw_A          257 --------------------TDGGVDYSFECI-------G---------NVKVMRAALEACHKGWGVSVV  290 (373)
T ss_dssp             --------------------TTSCBSEEEECS-------C---------CHHHHHHHHHTBCTTTCEEEE
T ss_pred             --------------------hCCCCCEEEECC-------C---------cHHHHHHHHHhhccCCcEEEE
Confidence                                223699987511       1         145788899999999 98875

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=93.18  E-value=0.36  Score=48.71  Aligned_cols=44  Identities=27%  Similarity=0.361  Sum_probs=36.1

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL  307 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~  307 (478)
                      ..+|||+|.|+ |.++..+.+..+.+|.+++.+++-++.|++ +|.
T Consensus       195 g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~-lGa  239 (369)
T 1uuf_A          195 GKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA-LGA  239 (369)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH-HTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cCC
Confidence            46999999875 666767777778899999999999999987 563

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=93.16  E-value=0.42  Score=47.36  Aligned_cols=95  Identities=20%  Similarity=0.311  Sum_probs=64.7

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+|||+|.|+ |.++..+.+.. +.+|.+++.+++-.+.|+++ |..  .-+. ...|..+.+++..            
T Consensus       172 g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~l-Ga~--~~i~-~~~~~~~~v~~~t------------  235 (345)
T 3jv7_A          172 GSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREV-GAD--AAVK-SGAGAADAIRELT------------  235 (345)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHT-TCS--EEEE-CSTTHHHHHHHHH------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc-CCC--EEEc-CCCcHHHHHHHHh------------
Confidence            56899999875 66666677666 68999999999999999874 532  1111 1123444444432            


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                     ....+|+||--+  +              ..+.++.+.+.|+++|.+++
T Consensus       236 ---------------~g~g~d~v~d~~--G--------------~~~~~~~~~~~l~~~G~iv~  268 (345)
T 3jv7_A          236 ---------------GGQGATAVFDFV--G--------------AQSTIDTAQQVVAVDGHISV  268 (345)
T ss_dssp             ---------------GGGCEEEEEESS--C--------------CHHHHHHHHHHEEEEEEEEE
T ss_pred             ---------------CCCCCeEEEECC--C--------------CHHHHHHHHHHHhcCCEEEE
Confidence                           234699887621  1              14578899999999999885

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=93.15  E-value=0.35  Score=49.03  Aligned_cols=107  Identities=15%  Similarity=0.121  Sum_probs=65.2

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCCCCCCCeEEEEch-HHHHHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGD-AIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~D-g~~~l~~~~~~~~~~~~~~~  339 (478)
                      ..+|||+|.|+ |.++..+.+..+. +|.+++.+++-++.|++ +|.  + .+.....| ..+.+++..           
T Consensus       186 g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~-lGa--~-~i~~~~~~~~~~~v~~~t-----------  250 (398)
T 1kol_A          186 GSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA-QGF--E-IADLSLDTPLHEQIAALL-----------  250 (398)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH-TTC--E-EEETTSSSCHHHHHHHHH-----------
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH-cCC--c-EEccCCcchHHHHHHHHh-----------
Confidence            46999999875 7777777777777 89999999999999976 453  1 11111112 344454421           


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCC---CCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDAR---NGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~---~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                      ....+|+||--+-.....   .++    ..--....++.+.+.|+++|.+++
T Consensus       251 ----------------~g~g~Dvvid~~G~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~G~iv~  298 (398)
T 1kol_A          251 ----------------GEPEVDCAVDAVGFEARGHGHEGA----KHEAPATVLNSLMQVTRVAGKIGI  298 (398)
T ss_dssp             ----------------SSSCEEEEEECCCTTCBCSSTTGG----GSBCTTHHHHHHHHHEEEEEEEEE
T ss_pred             ----------------CCCCCCEEEECCCCcccccccccc----cccchHHHHHHHHHHHhcCCEEEE
Confidence                            234699987532211000   000    000113478888999999999875

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=93.15  E-value=0.88  Score=47.49  Aligned_cols=39  Identities=15%  Similarity=0.191  Sum_probs=30.4

Q ss_pred             CeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHH
Q 038592          264 PKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQ  303 (478)
Q Consensus       264 ~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~  303 (478)
                      .+|.|||+|  |..++..|.+. +.+|+++|+|++.++..++
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~-G~~V~~~D~~~~~v~~l~~   43 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAEL-GANVRCIDTDRNKIEQLNS   43 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHc
Confidence            489999999  44455555543 6799999999999887766

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=93.14  E-value=0.26  Score=48.72  Aligned_cols=95  Identities=21%  Similarity=0.304  Sum_probs=62.6

Q ss_pred             CCeEEEEeC--chhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGV--GGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGl--GgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+|||+|+  |.|.++..+.+..+.+|.+++.+++-++.+++ +|..  .-+.....|..+.+.+..            
T Consensus       149 g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-~ga~--~~~~~~~~~~~~~~~~~~------------  213 (334)
T 3qwb_A          149 GDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKE-YGAE--YLINASKEDILRQVLKFT------------  213 (334)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-TTCS--EEEETTTSCHHHHHHHHT------------
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cCCc--EEEeCCCchHHHHHHHHh------------
Confidence            568999994  34666666666678899999999999999987 4531  111111134555554421            


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                     ....+|+|+--+       |          .+.++.+.+.|+++|.++.
T Consensus       214 ---------------~~~g~D~vid~~-------g----------~~~~~~~~~~l~~~G~iv~  245 (334)
T 3qwb_A          214 ---------------NGKGVDASFDSV-------G----------KDTFEISLAALKRKGVFVS  245 (334)
T ss_dssp             ---------------TTSCEEEEEECC-------G----------GGGHHHHHHHEEEEEEEEE
T ss_pred             ---------------CCCCceEEEECC-------C----------hHHHHHHHHHhccCCEEEE
Confidence                           245699987622       1          1256778889999998875

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=93.00  E-value=0.19  Score=50.78  Aligned_cols=98  Identities=19%  Similarity=0.199  Sum_probs=64.6

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+|||+|.|+ |.++..+.+..+. +|.+++.+++-.+.|+++ |...  -+.....|..+.+.+..            
T Consensus       183 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-Ga~~--vi~~~~~~~~~~i~~~~------------  247 (370)
T 4ej6_A          183 GSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEV-GATA--TVDPSAGDVVEAIAGPV------------  247 (370)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH-TCSE--EECTTSSCHHHHHHSTT------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc-CCCE--EECCCCcCHHHHHHhhh------------
Confidence            46999999875 6677777777787 999999999999999874 5421  00001134444443200            


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                   ......+|+||--+  +              ..+.++.+.+.|+++|.+++
T Consensus       248 -------------~~~~gg~Dvvid~~--G--------------~~~~~~~~~~~l~~~G~vv~  282 (370)
T 4ej6_A          248 -------------GLVPGGVDVVIECA--G--------------VAETVKQSTRLAKAGGTVVI  282 (370)
T ss_dssp             -------------SSSTTCEEEEEECS--C--------------CHHHHHHHHHHEEEEEEEEE
T ss_pred             -------------hccCCCCCEEEECC--C--------------CHHHHHHHHHHhccCCEEEE
Confidence                         00223799988521  1              14578889999999999885

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=92.98  E-value=0.54  Score=45.56  Aligned_cols=41  Identities=17%  Similarity=0.300  Sum_probs=32.2

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHh
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQY  304 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~  304 (478)
                      .++|.|||+|  |..++..+... +.+|+++|.+++.++.+++.
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~~~~   46 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTAFH-GFAVTAYDINTDALDAAKKR   46 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSHHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHH
Confidence            3689999998  44566655543 78999999999999888765

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=92.93  E-value=1.1  Score=44.98  Aligned_cols=92  Identities=13%  Similarity=0.107  Sum_probs=63.4

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCCCCCCCeEEEE-----chHHHHHHHHHhhhcCCC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGLEDGEFLQVSV-----GDAIEFLEKLARQIVGKN  335 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v-----~Dg~~~l~~~~~~~~~~~  335 (478)
                      ..+|||+|.|+ |.++..+.+..+. +|.+++.+++-.+.|++ +|..     .++.     .|..+.+++..       
T Consensus       196 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~-lGa~-----~vi~~~~~~~~~~~~v~~~~-------  262 (376)
T 1e3i_A          196 GSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA-LGAT-----DCLNPRELDKPVQDVITELT-------  262 (376)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH-TTCS-----EEECGGGCSSCHHHHHHHHH-------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-hCCc-----EEEccccccchHHHHHHHHh-------
Confidence            46999999764 6666667777777 89999999999999976 4542     1111     23445554421       


Q ss_pred             CCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcC-cEEEE
Q 038592          336 PDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDF-GIFVM  404 (478)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~-Gilv~  404 (478)
                                           ...+|+||--+       |         ..+.++.+.+.|+++ |.+++
T Consensus       263 ---------------------~~g~Dvvid~~-------G---------~~~~~~~~~~~l~~~~G~iv~  295 (376)
T 1e3i_A          263 ---------------------AGGVDYSLDCA-------G---------TAQTLKAAVDCTVLGWGSCTV  295 (376)
T ss_dssp             ---------------------TSCBSEEEESS-------C---------CHHHHHHHHHTBCTTTCEEEE
T ss_pred             ---------------------CCCccEEEECC-------C---------CHHHHHHHHHHhhcCCCEEEE
Confidence                                 23699987511       1         145788899999999 98875

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=92.85  E-value=0.12  Score=51.56  Aligned_cols=72  Identities=17%  Similarity=0.164  Sum_probs=46.5

Q ss_pred             CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCC--CCCC--Ch
Q 038592          310 GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAP--PVEF--VR  385 (478)
Q Consensus       310 d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~P--p~~f--~~  385 (478)
                      ..+.+++.+|++++++.+                            .+.++|+|++|..=.....+-...  ..++  .-
T Consensus        12 ~~~~~ii~gD~~~~l~~l----------------------------~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l   63 (323)
T 1boo_A           12 TSNGSMYIGDSLELLESF----------------------------PEESISLVMTSPPFALQRKKEYGNLEQHEYVDWF   63 (323)
T ss_dssp             CSSEEEEESCHHHHGGGS----------------------------CSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHH
T ss_pred             cCCceEEeCcHHHHHhhC----------------------------CCCCeeEEEECCCCCCCcccccCCcCHHHHHHHH
Confidence            467899999999987542                            456799999974211100000000  0001  13


Q ss_pred             HHHHHHHHHccCcCcEEEEEeCCC
Q 038592          386 KDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       386 ~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                      .+.+..++++|+|+|.+++++...
T Consensus        64 ~~~l~~~~rvLk~~G~i~i~~~d~   87 (323)
T 1boo_A           64 LSFAKVVNKKLKPDGSFVVDFGGA   87 (323)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEECCC
T ss_pred             HHHHHHHHHHCcCCcEEEEEECCE
Confidence            567888999999999999988765

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=92.76  E-value=1.7  Score=36.26  Aligned_cols=51  Identities=20%  Similarity=0.275  Sum_probs=34.6

Q ss_pred             CeEEEEeCch--hHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHH
Q 038592          264 PKALCVGVGG--GALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAI  321 (478)
Q Consensus       264 ~~VLvIGlGg--G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~  321 (478)
                      .+|+|+|+|.  ..++..|.+. +.+|+++|.+++-++..++.++      +.++.+|..
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~-g~~v~~~d~~~~~~~~~~~~~~------~~~~~~d~~   57 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEK-GHDIVLIDIDKDICKKASAEID------ALVINGDCT   57 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHCS------SEEEESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCeEEEEECCHHHHHHHHHhcC------cEEEEcCCC
Confidence            5899999872  2344555443 6799999999998876665443      345666653

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=92.59  E-value=0.52  Score=44.55  Aligned_cols=93  Identities=16%  Similarity=0.333  Sum_probs=59.4

Q ss_pred             CeEEEEeCc--hhHHHHHHHhhCCC----EEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCC
Q 038592          264 PKALCVGVG--GGALVSFLRTQLDF----EVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPD  337 (478)
Q Consensus       264 ~~VLvIGlG--gG~L~~~L~~~~~~----~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~  337 (478)
                      .+|.+||+|  |+.++..|.+. +.    +|.+++.+++-++...+.+|.      + ...|..+.+++           
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~-g~~~~~~V~~~~r~~~~~~~~~~~~g~------~-~~~~~~e~~~~-----------   63 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINK-NIVSSNQIICSDLNTANLKNASEKYGL------T-TTTDNNEVAKN-----------   63 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT-TSSCGGGEEEECSCHHHHHHHHHHHCC------E-ECSCHHHHHHH-----------
T ss_pred             CeEEEECccHHHHHHHHHHHhC-CCCCCCeEEEEeCCHHHHHHHHHHhCC------E-EeCChHHHHHh-----------
Confidence            489999999  55677777664 33    899999999988877665553      2 23344444432           


Q ss_pred             CCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCC
Q 038592          338 SFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPN  410 (478)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~  410 (478)
                                            .|+||+-+           ||.  .-.+.++.+...|+++-+++....+-.
T Consensus        64 ----------------------aDvVilav-----------~~~--~~~~v~~~l~~~l~~~~~vvs~~~gi~  101 (247)
T 3gt0_A           64 ----------------------ADILILSI-----------KPD--LYASIINEIKEIIKNDAIIVTIAAGKS  101 (247)
T ss_dssp             ----------------------CSEEEECS-----------CTT--THHHHC---CCSSCTTCEEEECSCCSC
T ss_pred             ----------------------CCEEEEEe-----------CHH--HHHHHHHHHHhhcCCCCEEEEecCCCC
Confidence                                  69999943           222  246677788888888777664444443

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=92.53  E-value=0.32  Score=47.96  Aligned_cols=95  Identities=15%  Similarity=0.171  Sum_probs=63.2

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+|||+|++  .|.++..+.+..+.+|.+++.+++-++.+.+-+|..  .-+.....|..+.+.+.             
T Consensus       150 g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~-------------  214 (336)
T 4b7c_A          150 GETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFD--GAIDYKNEDLAAGLKRE-------------  214 (336)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCS--EEEETTTSCHHHHHHHH-------------
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCC--EEEECCCHHHHHHHHHh-------------
Confidence            5689999983  466666666667889999999999999985556642  11111113444444442             


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                     ....+|+||--+       |          .+.+..+.+.|+++|.+++
T Consensus       215 ---------------~~~~~d~vi~~~-------g----------~~~~~~~~~~l~~~G~iv~  246 (336)
T 4b7c_A          215 ---------------CPKGIDVFFDNV-------G----------GEILDTVLTRIAFKARIVL  246 (336)
T ss_dssp             ---------------CTTCEEEEEESS-------C----------HHHHHHHHTTEEEEEEEEE
T ss_pred             ---------------cCCCceEEEECC-------C----------cchHHHHHHHHhhCCEEEE
Confidence                           234699887621       1          2468888899999998875

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=92.38  E-value=0.29  Score=48.56  Aligned_cols=94  Identities=20%  Similarity=0.299  Sum_probs=61.4

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+|||+|+|+ |.++..+.+..+.+|.+++.+++-++.+++ +|..  .-+.....|..+.+.+.              
T Consensus       165 g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-lGa~--~~~d~~~~~~~~~~~~~--------------  227 (339)
T 1rjw_A          165 GEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE-LGAD--LVVNPLKEDAAKFMKEK--------------  227 (339)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-TTCS--EEECTTTSCHHHHHHHH--------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-CCCC--EEecCCCccHHHHHHHH--------------
Confidence            46999999864 555656666668899999999999999976 5542  00000012333444331              


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                    . ..+|+||--+       |         ..+.++.+.+.|+++|.+++
T Consensus       228 --------------~-~~~d~vid~~-------g---------~~~~~~~~~~~l~~~G~~v~  259 (339)
T 1rjw_A          228 --------------V-GGVHAAVVTA-------V---------SKPAFQSAYNSIRRGGACVL  259 (339)
T ss_dssp             --------------H-SSEEEEEESS-------C---------CHHHHHHHHHHEEEEEEEEE
T ss_pred             --------------h-CCCCEEEECC-------C---------CHHHHHHHHHHhhcCCEEEE
Confidence                          2 3599987621       1         13567888899999998874

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=92.28  E-value=2.4  Score=44.51  Aligned_cols=41  Identities=24%  Similarity=0.473  Sum_probs=32.7

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhC-CCEEEEEECChHHHHHHHH
Q 038592          263 RPKALCVGVG--GGALVSFLRTQL-DFEVVGVEMDEVVLRVARQ  303 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~  303 (478)
                      ..+|.|||+|  |+.++..|.+.- +.+|+++|+|++.++..++
T Consensus         9 ~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~   52 (481)
T 2o3j_A            9 VSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNS   52 (481)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHC
Confidence            3589999999  556777777663 6899999999998887654

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=92.24  E-value=1.8  Score=45.54  Aligned_cols=41  Identities=15%  Similarity=0.212  Sum_probs=31.8

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHh
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQY  304 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~  304 (478)
                      ..+|.|||+|  |+.++..|.+. +.+|+++|+|++.++..++.
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~-G~~V~~~d~~~~~v~~l~~~   50 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADI-GHDVFCLDVDQAKIDILNNG   50 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHTT
T ss_pred             CceEEEECcCHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHCC
Confidence            4699999999  44456555543 67999999999999887664

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=92.24  E-value=0.31  Score=48.48  Aligned_cols=96  Identities=17%  Similarity=0.158  Sum_probs=63.1

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+|||+|+|+ |.++..+.+..+. +|.+++.+++-++.++++ |..  .-+.....|..+.+.+..            
T Consensus       168 g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~-Ga~--~~~~~~~~~~~~~v~~~~------------  232 (348)
T 2d8a_A          168 GKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKV-GAD--YVINPFEEDVVKEVMDIT------------  232 (348)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHH-TCS--EEECTTTSCHHHHHHHHT------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CCC--EEECCCCcCHHHHHHHHc------------
Confidence            46899999864 5666666666777 999999999999999864 532  000000124444454421            


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                     ....+|+||--+       |         ..+.++.+.+.|+++|.++.
T Consensus       233 ---------------~g~g~D~vid~~-------g---------~~~~~~~~~~~l~~~G~iv~  265 (348)
T 2d8a_A          233 ---------------DGNGVDVFLEFS-------G---------APKALEQGLQAVTPAGRVSL  265 (348)
T ss_dssp             ---------------TTSCEEEEEECS-------C---------CHHHHHHHHHHEEEEEEEEE
T ss_pred             ---------------CCCCCCEEEECC-------C---------CHHHHHHHHHHHhcCCEEEE
Confidence                           234699997621       1         14578888999999998774

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=92.22  E-value=1.3  Score=44.69  Aligned_cols=44  Identities=20%  Similarity=0.240  Sum_probs=33.3

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCCEEEEEECChHHHHHHHHhcC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDFEVVGVEMDEVVLRVARQYFG  306 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg  306 (478)
                      +.+|+|+|.|+ |..+..+....+.+|++++.+++-++.+++.++
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~  211 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFG  211 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhC
Confidence            57999999974 333444444567799999999999988887664

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=92.14  E-value=0.32  Score=47.93  Aligned_cols=95  Identities=20%  Similarity=0.191  Sum_probs=61.9

Q ss_pred             CCeEEEEeC--chhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGV--GGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGl--GgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+|||+|+  |.|.++..+.+..+.+|.+++.+++-++.++++ |..  .-+.....|..+.+.+..            
T Consensus       141 g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~-Ga~--~~~~~~~~~~~~~~~~~~------------  205 (325)
T 3jyn_A          141 GEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKAL-GAW--ETIDYSHEDVAKRVLELT------------  205 (325)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH-TCS--EEEETTTSCHHHHHHHHT------------
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-CCC--EEEeCCCccHHHHHHHHh------------
Confidence            568999994  346666666666688999999999999999874 531  111111234445554421            


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                     ....+|+||--+       |          .+.+..+.+.|+++|.+++
T Consensus       206 ---------------~~~g~Dvvid~~-------g----------~~~~~~~~~~l~~~G~iv~  237 (325)
T 3jyn_A          206 ---------------DGKKCPVVYDGV-------G----------QDTWLTSLDSVAPRGLVVS  237 (325)
T ss_dssp             ---------------TTCCEEEEEESS-------C----------GGGHHHHHTTEEEEEEEEE
T ss_pred             ---------------CCCCceEEEECC-------C----------hHHHHHHHHHhcCCCEEEE
Confidence                           235799887621       1          1256778889999998885

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=92.08  E-value=0.44  Score=48.53  Aligned_cols=42  Identities=19%  Similarity=0.202  Sum_probs=34.9

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCC-EEEEEECChHHHHHHHHh
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDF-EVVGVEMDEVVLRVARQY  304 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~  304 (478)
                      ..+|||+|.|+ |.++..+.+..+. +|.+++.+++-++.|+++
T Consensus       214 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l  257 (404)
T 3ip1_A          214 GDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKEL  257 (404)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc
Confidence            46899999864 6666667777787 999999999999999875

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=91.97  E-value=1.7  Score=44.08  Aligned_cols=45  Identities=16%  Similarity=0.180  Sum_probs=34.2

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL  307 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~  307 (478)
                      +.+|+|+|+|+ |.....+...++.+|+++|.++.-++.+++.+|.
T Consensus       168 g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~  213 (377)
T 2vhw_A          168 PADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCG  213 (377)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCC
Confidence            67999999973 4333333444678999999999999988887764

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=91.96  E-value=0.32  Score=48.38  Aligned_cols=94  Identities=14%  Similarity=0.181  Sum_probs=62.4

Q ss_pred             CCeEEEEeC--chhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGV--GGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGl--GgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+|||+|+  |.|.++..+.+..+.+|.+++.+++-.+.+++. |..  .-+... .|..+.+.+..            
T Consensus       160 g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~-ga~--~v~~~~-~~~~~~v~~~~------------  223 (342)
T 4eye_A          160 GETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSV-GAD--IVLPLE-EGWAKAVREAT------------  223 (342)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH-TCS--EEEESS-TTHHHHHHHHT------------
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc-CCc--EEecCc-hhHHHHHHHHh------------
Confidence            568999997  346677677777788999999999999999874 531  111111 34444444421            


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                     ....+|+||--+  +               .+.+..+.+.|+++|.+++
T Consensus       224 ---------------~~~g~Dvvid~~--g---------------~~~~~~~~~~l~~~G~iv~  255 (342)
T 4eye_A          224 ---------------GGAGVDMVVDPI--G---------------GPAFDDAVRTLASEGRLLV  255 (342)
T ss_dssp             ---------------TTSCEEEEEESC--C-----------------CHHHHHHTEEEEEEEEE
T ss_pred             ---------------CCCCceEEEECC--c---------------hhHHHHHHHhhcCCCEEEE
Confidence                           234699987622  1               0136678889999998874

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=91.87  E-value=0.68  Score=45.12  Aligned_cols=40  Identities=20%  Similarity=0.315  Sum_probs=31.2

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHH
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQ  303 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~  303 (478)
                      ..+|.|||+|  |+.++..|.+. +.+|+++|.+++.++.+++
T Consensus        15 ~~~I~VIG~G~mG~~iA~~la~~-G~~V~~~d~~~~~~~~~~~   56 (302)
T 1f0y_A           15 VKHVTVIGGGLMGAGIAQVAAAT-GHTVVLVDQTEDILAKSKK   56 (302)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-CCeEEEEECCHHHHHHHHH
Confidence            4689999999  44566666654 6799999999999887654

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=91.85  E-value=0.65  Score=39.54  Aligned_cols=52  Identities=15%  Similarity=0.213  Sum_probs=37.9

Q ss_pred             CCeEEEEeCch--hHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHH
Q 038592          263 RPKALCVGVGG--GALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIE  322 (478)
Q Consensus       263 ~~~VLvIGlGg--G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~  322 (478)
                      ..+|+|+|+|.  ..++..|.+. +.+|+++|.|++.++.+++.       ...++.+|+.+
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~-g~~V~~id~~~~~~~~~~~~-------~~~~~~gd~~~   59 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAA-GKKVLAVDKSKEKIELLEDE-------GFDAVIADPTD   59 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT-TCCEEEEESCHHHHHHHHHT-------TCEEEECCTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHC-------CCcEEECCCCC
Confidence            46899999973  3355555543 67999999999998887653       25677888754

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=91.80  E-value=0.35  Score=47.96  Aligned_cols=42  Identities=19%  Similarity=0.252  Sum_probs=33.7

Q ss_pred             CCeEEEEeCch--hHHHHHHHhhCCCEEEEEECChHHHHHHHHh
Q 038592          263 RPKALCVGVGG--GALVSFLRTQLDFEVVGVEMDEVVLRVARQY  304 (478)
Q Consensus       263 ~~~VLvIGlGg--G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~  304 (478)
                      ..+|||+|+|+  |.++..+.+..+.+|.+++.+++-++.++++
T Consensus       145 g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~l  188 (340)
T 3gms_A          145 NDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRL  188 (340)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhC
Confidence            46999999874  5566556666688999999999999999874

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=91.65  E-value=0.7  Score=48.36  Aligned_cols=100  Identities=16%  Similarity=0.196  Sum_probs=63.4

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcC-----------CCC----CCCeEEEEchHHHHHH
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFG-----------LED----GEFLQVSVGDAIEFLE  325 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg-----------~~~----d~rl~v~v~Dg~~~l~  325 (478)
                      ..+|.|||+|  |+.++..+.+. +.+|+++|++++.++.++++..           +..    ....++ ..|. +   
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~-G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~-~---  110 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARV-GISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSST-K---  110 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT-TCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCG-G---
T ss_pred             CCEEEEECcCHHHHHHHHHHHhC-CCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCH-H---
Confidence            3579999999  44566655543 6799999999999888765421           000    001111 2221 1   


Q ss_pred             HHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC-ChHHHHHHHHHccCcCcEEEE
Q 038592          326 KLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF-VRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f-~~~efl~~~~~~L~~~Gilv~  404 (478)
                                                    .-...|+||.-+            |+.+ +..++++.+...++++-+++.
T Consensus       111 ------------------------------~~~~aDlVIeaV------------pe~~~~k~~v~~~l~~~~~~~~ii~s  148 (463)
T 1zcj_A          111 ------------------------------ELSTVDLVVEAV------------FEDMNLKKKVFAELSALCKPGAFLCT  148 (463)
T ss_dssp             ------------------------------GGTTCSEEEECC------------CSCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             ------------------------------HHCCCCEEEEcC------------CCCHHHHHHHHHHHHhhCCCCeEEEe
Confidence                                          112468999843            3332 346788889999999988888


Q ss_pred             EeCCCC
Q 038592          405 NVIPPN  410 (478)
Q Consensus       405 N~~~~~  410 (478)
                      |..+..
T Consensus       149 nTs~~~  154 (463)
T 1zcj_A          149 NTSALN  154 (463)
T ss_dssp             CCSSSC
T ss_pred             CCCCcC
Confidence            776653

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=91.65  E-value=0.32  Score=50.31  Aligned_cols=56  Identities=25%  Similarity=0.433  Sum_probs=42.4

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHH--HHHH
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIE--FLEK  326 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~--~l~~  326 (478)
                      ..+|+|+|+|  |-.+++.|... +..|++||.||+.++.++++ |      +.++.+|+.+  .|++
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~-g~~vvvId~d~~~v~~~~~~-g------~~vi~GDat~~~~L~~   63 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSS-GVKMVVLDHDPDHIETLRKF-G------MKVFYGDATRMDLLES   63 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT-TCCEEEEECCHHHHHHHHHT-T------CCCEESCTTCHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHhC-C------CeEEEcCCCCHHHHHh
Confidence            4589999998  34466666653 68999999999999998763 3      4688999866  4544

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=91.52  E-value=0.86  Score=46.05  Aligned_cols=114  Identities=13%  Similarity=0.066  Sum_probs=67.8

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHh------cC-CCCCCCeEEEEchHHHHHHHHHhhhcC
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQY------FG-LEDGEFLQVSVGDAIEFLEKLARQIVG  333 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~------Fg-~~~d~rl~v~v~Dg~~~l~~~~~~~~~  333 (478)
                      +.+|.|||+|  |++++..|.+. +.+|+.++.+++.++..++.      ++ ..-.+++++ ..|..+.+         
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~-G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~-t~d~~ea~---------   97 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARK-GQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKA-YCDLKASL---------   97 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTT-TCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEE-ESCHHHHH---------
T ss_pred             CCeEEEECccHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEE-ECCHHHHH---------
Confidence            4689999999  45566666543 56899999999988766653      21 111233433 24443332         


Q ss_pred             CCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCC-CCch
Q 038592          334 KNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIP-PNRS  412 (478)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~-~~~~  412 (478)
                                              ...|+||+-+            |.. .-.++++.++..|+++-+++ ++.. -...
T Consensus        98 ------------------------~~aDvVilaV------------p~~-~~~~vl~~i~~~l~~~~ivv-s~~kGi~~~  139 (356)
T 3k96_A           98 ------------------------EGVTDILIVV------------PSF-AFHEVITRMKPLIDAKTRIA-WGTKGLAKG  139 (356)
T ss_dssp             ------------------------TTCCEEEECC------------CHH-HHHHHHHHHGGGCCTTCEEE-ECCCSCBTT
T ss_pred             ------------------------hcCCEEEECC------------CHH-HHHHHHHHHHHhcCCCCEEE-EEeCCCCcC
Confidence                                    2369999932            222 45778888988998876554 3322 2222


Q ss_pred             HHHHHHHHHHHhcC
Q 038592          413 FYDMLIQEFRDVFQ  426 (478)
Q Consensus       413 ~~~~v~~~l~~vF~  426 (478)
                      . +.+-+.+.+.++
T Consensus       140 t-~~~se~i~~~l~  152 (356)
T 3k96_A          140 S-RLLHEVVATELG  152 (356)
T ss_dssp             T-BCHHHHHHHHHC
T ss_pred             c-cCHHHHHHHHcC
Confidence            1 233445566666

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=91.45  E-value=0.15  Score=50.14  Aligned_cols=69  Identities=19%  Similarity=0.205  Sum_probs=42.9

Q ss_pred             CCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCC--------
Q 038592          311 EFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVE--------  382 (478)
Q Consensus       311 ~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~--------  382 (478)
                      .+.+++++|.+++++.+                            .+++||+|+.|.-=..... ....+..        
T Consensus        20 ~~~~i~~gD~~~~l~~l----------------------------~~~s~DlIvtdPPY~~~~~-y~~~~~~~~~~~~~~   70 (297)
T 2zig_A           20 GVHRLHVGDAREVLASF----------------------------PEASVHLVVTSPPYWTLKR-YEDTPGQLGHIEDYE   70 (297)
T ss_dssp             -CEEEEESCHHHHHTTS----------------------------CTTCEEEEEECCCCCCCC--------CCHHHHHHH
T ss_pred             cCCEEEECcHHHHHhhC----------------------------CCCceeEEEECCCCCCccc-cCCChhhhcccccHH
Confidence            46799999999987541                            4568999999742110000 0000111        


Q ss_pred             -CCh--HHHHHHHHHccCcCcEEEEEeCC
Q 038592          383 -FVR--KDVLLAARLILSDFGIFVMNVIP  408 (478)
Q Consensus       383 -f~~--~efl~~~~~~L~~~Gilv~N~~~  408 (478)
                       ++.  ..++..++++|+|+|.+++++..
T Consensus        71 ~~l~~l~~~~~~~~rvLk~~G~l~i~~~d   99 (297)
T 2zig_A           71 AFLDELDRVWREVFRLLVPGGRLVIVVGD   99 (297)
T ss_dssp             HHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             HHHHHHHHHHHHHHHHcCCCcEEEEEECC
Confidence             111  34667899999999999998763

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=91.43  E-value=1.1  Score=43.21  Aligned_cols=105  Identities=12%  Similarity=0.028  Sum_probs=66.0

Q ss_pred             CeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          264 PKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       264 ~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      .+|.+||+|  |..++..|.+. +.+|++++.+++-++...+. +      ++ ...|..+.+++               
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~-G~~V~~~dr~~~~~~~~~~~-g------~~-~~~~~~~~~~~---------------   57 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKA-GCSVTIWNRSPEKAEELAAL-G------AE-RAATPCEVVES---------------   57 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSGGGGHHHHHT-T------CE-ECSSHHHHHHH---------------
T ss_pred             CEEEEEeecHHHHHHHHHHHHC-CCeEEEEcCCHHHHHHHHHC-C------Ce-ecCCHHHHHhc---------------
Confidence            489999999  45566666654 67999999999888776654 2      21 23344444432               


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHH---HHHHHccCcCcEEEEEeCCCCchHHHHHH
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVL---LAARLILSDFGIFVMNVIPPNRSFYDMLI  418 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl---~~~~~~L~~~Gilv~N~~~~~~~~~~~v~  418 (478)
                                        .|+||+-+            |..-...+.+   +.+...|+++- +++++.+......+.+.
T Consensus        58 ------------------aDvvi~~v------------p~~~~~~~v~~~~~~l~~~l~~~~-~vi~~st~~~~~~~~~~  106 (287)
T 3pef_A           58 ------------------CPVTFAML------------ADPAAAEEVCFGKHGVLEGIGEGR-GYVDMSTVDPATSQRIG  106 (287)
T ss_dssp             ------------------CSEEEECC------------SSHHHHHHHHHSTTCHHHHCCTTC-EEEECSCCCHHHHHHHH
T ss_pred             ------------------CCEEEEEc------------CCHHHHHHHHcCcchHhhcCCCCC-EEEeCCCCCHHHHHHHH
Confidence                              58999833            2111234455   66677787755 55677665555555555


Q ss_pred             HHHHH
Q 038592          419 QEFRD  423 (478)
Q Consensus       419 ~~l~~  423 (478)
                      +.+.+
T Consensus       107 ~~~~~  111 (287)
T 3pef_A          107 VAVVA  111 (287)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55555

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=91.40  E-value=0.54  Score=47.42  Aligned_cols=100  Identities=20%  Similarity=0.273  Sum_probs=68.0

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+|.+||+|  ||+++..|.+. +.+|.++|.+++.++.|++. |.      . ...|..+.+++..            
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~-G~~V~~~dr~~~~~~~a~~~-G~------~-~~~~~~e~~~~a~------------   66 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAA-NHSVFGYNRSRSGAKSAVDE-GF------D-VSADLEATLQRAA------------   66 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHT-TCCEEEECSCHHHHHHHHHT-TC------C-EESCHHHHHHHHH------------
T ss_pred             CCEEEEEeecHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc-CC------e-eeCCHHHHHHhcc------------
Confidence            4689999999  77888888765 67999999999999988764 43      1 2356555554421            


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHH
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYD  415 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~  415 (478)
                                       ...|+||+-+           |+ . ...+.++.+... ++ |.+++++.+-.....+
T Consensus        67 -----------------~~aDlVilav-----------P~-~-~~~~vl~~l~~~-~~-~~iv~Dv~Svk~~i~~  109 (341)
T 3ktd_A           67 -----------------AEDALIVLAV-----------PM-T-AIDSLLDAVHTH-AP-NNGFTDVVSVKTAVYD  109 (341)
T ss_dssp             -----------------HTTCEEEECS-----------CH-H-HHHHHHHHHHHH-CT-TCCEEECCSCSHHHHH
T ss_pred             -----------------cCCCEEEEeC-----------CH-H-HHHHHHHHHHcc-CC-CCEEEEcCCCChHHHH
Confidence                             1369999932           32 2 346777877775 55 5677888776554433

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=91.15  E-value=1  Score=40.16  Aligned_cols=52  Identities=29%  Similarity=0.413  Sum_probs=36.9

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHH
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAI  321 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~  321 (478)
                      ..+|+|+|+|  |..++..|.+..+.+|+++|.|++-++.+++. |      ..++.+|+.
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~-g------~~~~~gd~~   92 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSE-G------RNVISGDAT   92 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHT-T------CCEEECCTT
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHC-C------CCEEEcCCC
Confidence            3589999998  33456666543267899999999988887653 3      356677764

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=91.10  E-value=0.45  Score=46.75  Aligned_cols=93  Identities=17%  Similarity=0.168  Sum_probs=58.5

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEE--EchHHHHHHHHHhhhcCCCCCC
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVS--VGDAIEFLEKLARQIVGKNPDS  338 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~--v~Dg~~~l~~~~~~~~~~~~~~  338 (478)
                      ..+|||.|++  .|.....+.+..+.+|.+++.+++-++.+++ +|..    ..+-  ..|..+-+.+..          
T Consensus       141 g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~-~g~~----~~~~~~~~~~~~~~~~~~----------  205 (327)
T 1qor_A          141 DEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK-AGAW----QVINYREEDLVERLKEIT----------  205 (327)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH-HTCS----EEEETTTSCHHHHHHHHT----------
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCCC----EEEECCCccHHHHHHHHh----------
Confidence            4689999943  4444444444457899999999999999887 4531    1111  123334343321          


Q ss_pred             CCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          339 FGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                       ....+|++|.-+  +               .+.++.+.+.|+++|.+++
T Consensus       206 -----------------~~~~~D~vi~~~--g---------------~~~~~~~~~~l~~~G~iv~  237 (327)
T 1qor_A          206 -----------------GGKKVRVVYDSV--G---------------RDTWERSLDCLQRRGLMVS  237 (327)
T ss_dssp             -----------------TTCCEEEEEECS--C---------------GGGHHHHHHTEEEEEEEEE
T ss_pred             -----------------CCCCceEEEECC--c---------------hHHHHHHHHHhcCCCEEEE
Confidence                             234699998632  1               1246788899999998874

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=91.09  E-value=0.48  Score=47.12  Aligned_cols=44  Identities=23%  Similarity=0.261  Sum_probs=36.4

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL  307 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~  307 (478)
                      ..+|||+|.|+ |.++..+.+..+.+|.+++.+++-.+.|++ +|.
T Consensus       177 g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~-lGa  221 (348)
T 3two_A          177 GTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALS-MGV  221 (348)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHH-TTC
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHh-cCC
Confidence            56999999875 667777777778899999999999999987 553

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=91.03  E-value=0.46  Score=47.73  Aligned_cols=127  Identities=19%  Similarity=0.092  Sum_probs=76.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CC-EEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DF-EVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~-~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      +.+|+.+-+|.|++...+...- .+ .|.+||+|+..++..+..|+-     ..++.+|..++..+..            
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~-----~~~~~~Di~~~~~~~~------------   64 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH-----TQLLAKTIEGITLEEF------------   64 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT-----SCEECSCGGGCCHHHH------------
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc-----cccccCCHHHccHhHc------------
Confidence            4689999999999998887753 23 689999999999999999852     3467888877643211            


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCC-CC----CCCCCCCCChHHHHHHHHHccC--cCcEEEEEeCCC-Cch
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDAR-NG----TSAPPVEFVRKDVLLAARLILS--DFGIFVMNVIPP-NRS  412 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~-~g----~s~Pp~~f~~~efl~~~~~~L~--~~Gilv~N~~~~-~~~  412 (478)
                                     ....+|+|+.+....+-+ .|    ..- +..-+-.+|++.+ ..++  |.-+++=||.+- +..
T Consensus        65 ---------------~~~~~D~l~~gpPCq~fS~ag~~~g~~d-~r~~l~~~~~~~i-~~~~~~P~~~~~ENV~~l~~~~  127 (343)
T 1g55_A           65 ---------------DRLSFDMILMSPPCQPFTRIGRQGDMTD-SRTNSFLHILDIL-PRLQKLPKYILLENVKGFEVSS  127 (343)
T ss_dssp             ---------------HHHCCSEEEECCC-------------------CHHHHHHHHG-GGCSSCCSEEEEEEETTGGGSH
T ss_pred             ---------------CcCCcCEEEEcCCCcchhhcCCcCCccC-ccchHHHHHHHHH-HHhcCCCCEEEEeCCccccCHH
Confidence                           112589999975432211 01    000 0111123444443 4455  765666699764 334


Q ss_pred             HHHHHHHHHHH
Q 038592          413 FYDMLIQEFRD  423 (478)
Q Consensus       413 ~~~~v~~~l~~  423 (478)
                      .++.+++.|.+
T Consensus       128 ~~~~i~~~l~~  138 (343)
T 1g55_A          128 TRDLLIQTIEN  138 (343)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            45556666654

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=91.01  E-value=0.45  Score=50.84  Aligned_cols=119  Identities=14%  Similarity=0.109  Sum_probs=72.1

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--------------CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHH
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--------------DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLA  328 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--------------~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~  328 (478)
                      ..+|+.-.||+|++.....++.              ...+.++|+|+....+|+-.+-+...+.-++..+|.+.+-..  
T Consensus       218 ~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~~--  295 (530)
T 3ufb_A          218 GESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPLR--  295 (530)
T ss_dssp             TCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCGG--
T ss_pred             CCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCchh--
Confidence            4589999999998654443321              246999999999999998654332233346788887753100  


Q ss_pred             hhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCC-----CCC-CCCCCCCChHHHHHHHHHccC-----
Q 038592          329 RQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDAR-----NGT-SAPPVEFVRKDVLLAARLILS-----  397 (478)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~-----~g~-s~Pp~~f~~~efl~~~~~~L~-----  397 (478)
                      .                        .....+||+|+....=+...     ... ..++..=...-|++.+...|+     
T Consensus       296 ~------------------------~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~  351 (530)
T 3ufb_A          296 E------------------------MGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHG  351 (530)
T ss_dssp             G------------------------CCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSS
T ss_pred             h------------------------hcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhc
Confidence            0                        01345799999954211000     000 001112234568888888886     


Q ss_pred             --cCcEEEEEeC
Q 038592          398 --DFGIFVMNVI  407 (478)
Q Consensus       398 --~~Gilv~N~~  407 (478)
                        +||.+++=+.
T Consensus       352 l~~gGr~avVlP  363 (530)
T 3ufb_A          352 SDNGGRAAVVVP  363 (530)
T ss_dssp             SSSCCEEEEEEE
T ss_pred             cCCCceEEEEec
Confidence              6898876543

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=90.98  E-value=0.68  Score=46.00  Aligned_cols=92  Identities=20%  Similarity=0.243  Sum_probs=62.3

Q ss_pred             CCeEEEEeC-c-hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGV-G-GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGl-G-gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+|||+|+ | .|.++..+.+..+.+|.++ .+++-++.++++ |..  . +. ...|..+.+.+..            
T Consensus       151 g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~l-Ga~--~-i~-~~~~~~~~~~~~~------------  212 (343)
T 3gaz_A          151 GQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDL-GAT--P-ID-ASREPEDYAAEHT------------  212 (343)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHH-TSE--E-EE-TTSCHHHHHHHHH------------
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHc-CCC--E-ec-cCCCHHHHHHHHh------------
Confidence            569999994 3 4667767777778899999 899999999774 531  1 22 2234455554432            


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                     ....+|+||--+       |          .+.+..+.+.|+++|.+++
T Consensus       213 ---------------~~~g~D~vid~~-------g----------~~~~~~~~~~l~~~G~iv~  244 (343)
T 3gaz_A          213 ---------------AGQGFDLVYDTL-------G----------GPVLDASFSAVKRFGHVVS  244 (343)
T ss_dssp             ---------------TTSCEEEEEESS-------C----------THHHHHHHHHEEEEEEEEE
T ss_pred             ---------------cCCCceEEEECC-------C----------cHHHHHHHHHHhcCCeEEE
Confidence                           245699887521       1          1367788889999999885

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=90.94  E-value=0.63  Score=45.85  Aligned_cols=95  Identities=21%  Similarity=0.234  Sum_probs=59.7

Q ss_pred             CCeEEEEeC--chhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGV--GGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGl--GgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+|||.|+  |.|.....+.+..+.+|.+++.+++-++.++++ |..  .-+.....|..+-+.+..            
T Consensus       146 g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~-g~~--~~~d~~~~~~~~~i~~~~------------  210 (333)
T 1wly_A          146 GDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKL-GCH--HTINYSTQDFAEVVREIT------------  210 (333)
T ss_dssp             TCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-TCS--EEEETTTSCHHHHHHHHH------------
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-CCC--EEEECCCHHHHHHHHHHh------------
Confidence            568999995  345555555555678999999999988988774 531  101111124444444321            


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                     ....+|++|.-+  +    +           +.++.+.+.|+++|.+++
T Consensus       211 ---------------~~~~~d~vi~~~--g----~-----------~~~~~~~~~l~~~G~iv~  242 (333)
T 1wly_A          211 ---------------GGKGVDVVYDSI--G----K-----------DTLQKSLDCLRPRGMCAA  242 (333)
T ss_dssp             ---------------TTCCEEEEEECS--C----T-----------TTHHHHHHTEEEEEEEEE
T ss_pred             ---------------CCCCCeEEEECC--c----H-----------HHHHHHHHhhccCCEEEE
Confidence                           234699998622  1    0           246778889999998874

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=90.92  E-value=1.5  Score=40.41  Aligned_cols=51  Identities=16%  Similarity=0.180  Sum_probs=37.2

Q ss_pred             eEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHH
Q 038592          265 KALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIE  322 (478)
Q Consensus       265 ~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~  322 (478)
                      +|+|+|+|  |..++..|.+. +.+|+++|.|++.++...+.++      ..++.+|+.+
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~-g~~v~vid~~~~~~~~l~~~~~------~~~i~gd~~~   54 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSR-KYGVVIINKDRELCEEFAKKLK------ATIIHGDGSH   54 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHT-TCCEEEEESCHHHHHHHHHHSS------SEEEESCTTS
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCeEEEEECCHHHHHHHHHHcC------CeEEEcCCCC
Confidence            69999986  33455555543 6799999999998887555443      5688888875

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=90.92  E-value=0.72  Score=44.41  Aligned_cols=41  Identities=17%  Similarity=0.351  Sum_probs=33.0

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhC-CCEEEEEECChHHHHHHHH
Q 038592          263 RPKALCVGVG--GGALVSFLRTQL-DFEVVGVEMDEVVLRVARQ  303 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~  303 (478)
                      ..+|.+||+|  |+.++..|.+.. +.+|.++|.+++.++.+++
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~   49 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALE   49 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHH
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHH
Confidence            3689999999  566777777653 6799999999998887765

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=90.91  E-value=5  Score=39.25  Aligned_cols=109  Identities=16%  Similarity=0.102  Sum_probs=70.1

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCC-EEEEEECC--hHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCC
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDF-EVVGVEMD--EVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPD  337 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~-~V~~VEiD--p~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~  337 (478)
                      ..+|.+||+|  |+.++..|.+. +. +|++++.+  +...+.++++ |.      + ...|..+.+++           
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~-G~~~V~~~dr~~~~~~~~~~~~~-g~------~-~~~~~~e~~~~-----------   83 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQA-GAIDMAAYDAASAESWRPRAEEL-GV------S-CKASVAEVAGE-----------   83 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHH-SCCEEEEECSSCHHHHHHHHHHT-TC------E-ECSCHHHHHHH-----------
T ss_pred             CCEEEEECccHHHHHHHHHHHHC-CCCeEEEEcCCCCHHHHHHHHHC-CC------E-EeCCHHHHHhc-----------
Confidence            3689999999  55677767665 56 99999997  5777776653 32      2 22344444332           


Q ss_pred             CCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHH
Q 038592          338 SFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDML  417 (478)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v  417 (478)
                                            .|+||+-+           |+.  ...+.++.+...|+++- +++++.+-.+.....+
T Consensus        84 ----------------------aDvVi~~v-----------p~~--~~~~~~~~l~~~l~~~~-ivvd~st~~~~~~~~~  127 (312)
T 3qsg_A           84 ----------------------CDVIFSLV-----------TAQ--AALEVAQQAGPHLCEGA-LYADFTSCSPAVKRAI  127 (312)
T ss_dssp             ----------------------CSEEEECS-----------CTT--THHHHHHHHGGGCCTTC-EEEECCCCCHHHHHHH
T ss_pred             ----------------------CCEEEEec-----------Cch--hHHHHHHhhHhhcCCCC-EEEEcCCCCHHHHHHH
Confidence                                  58999933           222  23456788888888755 5557766666666666


Q ss_pred             HHHHHHhcCc
Q 038592          418 IQEFRDVFQE  427 (478)
Q Consensus       418 ~~~l~~vF~~  427 (478)
                      ...+.+.+..
T Consensus       128 ~~~~~~~~~g  137 (312)
T 3qsg_A          128 GDVISRHRPS  137 (312)
T ss_dssp             HHHHHHHCTT
T ss_pred             HHHHHhhcCC
Confidence            7777766543

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=90.80  E-value=0.9  Score=43.51  Aligned_cols=41  Identities=27%  Similarity=0.422  Sum_probs=31.6

Q ss_pred             CeEEEEeCc--hhHHHHHHHhhC-CCEEEEEECChHHHHHHHHh
Q 038592          264 PKALCVGVG--GGALVSFLRTQL-DFEVVGVEMDEVVLRVARQY  304 (478)
Q Consensus       264 ~~VLvIGlG--gG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~  304 (478)
                      .+|.|||+|  |++++..|.+.- ..+|.++|.+++.++.++++
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~   45 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL   45 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHC
Confidence            479999999  566777776542 23899999999988887654

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=90.77  E-value=2.3  Score=42.73  Aligned_cols=96  Identities=18%  Similarity=0.209  Sum_probs=61.8

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCC-CEEEEEECChHHHHHHHHhcCCCCCCCeEEEEch---HHHHHHHHHhhhcCCCCC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLD-FEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGD---AIEFLEKLARQIVGKNPD  337 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~D---g~~~l~~~~~~~~~~~~~  337 (478)
                      ..+|||+|.|+ |.++..+.+..+ .+|.+++.+++-++.|++ +|..     .++..+   ..++.+++.+.       
T Consensus       196 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~-lGa~-----~vi~~~~~~~~~~~~~v~~~-------  262 (380)
T 1vj0_A          196 GKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE-IGAD-----LTLNRRETSVEERRKAIMDI-------  262 (380)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH-TTCS-----EEEETTTSCHHHHHHHHHHH-------
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH-cCCc-----EEEeccccCcchHHHHHHHH-------
Confidence            46999999653 566666777778 599999999999999986 4531     223222   22333332111       


Q ss_pred             CCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          338 SFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                       .....+|+||--+  +.              .+.++.+.+.|+++|.+++
T Consensus       263 -----------------~~g~g~Dvvid~~--g~--------------~~~~~~~~~~l~~~G~iv~  296 (380)
T 1vj0_A          263 -----------------THGRGADFILEAT--GD--------------SRALLEGSELLRRGGFYSV  296 (380)
T ss_dssp             -----------------TTTSCEEEEEECS--SC--------------TTHHHHHHHHEEEEEEEEE
T ss_pred             -----------------hCCCCCcEEEECC--CC--------------HHHHHHHHHHHhcCCEEEE
Confidence                             0234699988521  10              1357778899999998875

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=90.76  E-value=0.85  Score=44.82  Aligned_cols=92  Identities=18%  Similarity=0.285  Sum_probs=59.7

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEE---chHHHHHHHHHhhhcCCCCC
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSV---GDAIEFLEKLARQIVGKNPD  337 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v---~Dg~~~l~~~~~~~~~~~~~  337 (478)
                      ..+|||.|++  .|.....+....+.+|.+++.+++-++.+++ +|..    ..+-.   .|..+.+.+.          
T Consensus       146 g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~-~g~~----~~~d~~~~~~~~~~~~~~----------  210 (333)
T 1v3u_A          146 GETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQ-IGFD----AAFNYKTVNSLEEALKKA----------  210 (333)
T ss_dssp             SCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-TTCS----EEEETTSCSCHHHHHHHH----------
T ss_pred             CCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-cCCc----EEEecCCHHHHHHHHHHH----------
Confidence            4689999973  4554444555567899999999999998854 4531    11211   3444455442          


Q ss_pred             CCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          338 SFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                        ....+|++|.-+       |          .+.++.+.+.|+++|.+++
T Consensus       211 ------------------~~~~~d~vi~~~-------g----------~~~~~~~~~~l~~~G~~v~  242 (333)
T 1v3u_A          211 ------------------SPDGYDCYFDNV-------G----------GEFLNTVLSQMKDFGKIAI  242 (333)
T ss_dssp             ------------------CTTCEEEEEESS-------C----------HHHHHHHHTTEEEEEEEEE
T ss_pred             ------------------hCCCCeEEEECC-------C----------hHHHHHHHHHHhcCCEEEE
Confidence                              224699988622       1          2347788899999998874

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=90.74  E-value=3.2  Score=42.76  Aligned_cols=38  Identities=24%  Similarity=0.483  Sum_probs=29.6

Q ss_pred             eEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHH
Q 038592          265 KALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQ  303 (478)
Q Consensus       265 ~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~  303 (478)
                      +|.|||+|  |+.++..|.+. +.+|+++|+|++.++..++
T Consensus         2 kI~VIG~G~vG~~~A~~la~~-G~~V~~~d~~~~~~~~l~~   41 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSAR-GHEVIGVDVSSTKIDLINQ   41 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHT
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHhC
Confidence            78999999  44566666553 6799999999998887654

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=90.67  E-value=0.91  Score=44.78  Aligned_cols=43  Identities=16%  Similarity=0.297  Sum_probs=31.3

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcC
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFG  306 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg  306 (478)
                      +.+|+|||+|  |+.++..|.+. +.+|++++.+++.++..++..+
T Consensus         4 ~mki~iiG~G~~G~~~a~~L~~~-g~~V~~~~r~~~~~~~~~~~~~   48 (359)
T 1bg6_A            4 SKTYAVLGLGNGGHAFAAYLALK-GQSVLAWDIDAQRIKEIQDRGA   48 (359)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHHTS
T ss_pred             cCeEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHhcCC
Confidence            3589999998  34455555543 5789999999988877665533

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=90.65  E-value=0.23  Score=49.32  Aligned_cols=94  Identities=15%  Similarity=0.224  Sum_probs=61.5

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+|||+|.|+ |.++..+.+..+. +|.+++.+++-++.++++ .   +.-+.....|..+.+++.             
T Consensus       165 g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a---~~v~~~~~~~~~~~~~~~-------------  227 (343)
T 2dq4_A          165 GKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-A---DRLVNPLEEDLLEVVRRV-------------  227 (343)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-C---SEEECTTTSCHHHHHHHH-------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-H---HhccCcCccCHHHHHHHh-------------
Confidence            46899999864 5666666666787 999999999988888764 2   110000012444444442             


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                     ....+|+||--+  +              ..+.++.+.+.|+++|.+++
T Consensus       228 ---------------~~~g~D~vid~~--g--------------~~~~~~~~~~~l~~~G~iv~  260 (343)
T 2dq4_A          228 ---------------TGSGVEVLLEFS--G--------------NEAAIHQGLMALIPGGEARI  260 (343)
T ss_dssp             ---------------HSSCEEEEEECS--C--------------CHHHHHHHHHHEEEEEEEEE
T ss_pred             ---------------cCCCCCEEEECC--C--------------CHHHHHHHHHHHhcCCEEEE
Confidence                           134599998621  1              14577888999999998774

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=90.64  E-value=1.9  Score=41.43  Aligned_cols=40  Identities=15%  Similarity=0.184  Sum_probs=30.5

Q ss_pred             CeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHh
Q 038592          264 PKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQY  304 (478)
Q Consensus       264 ~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~  304 (478)
                      .+|.|||+|  |..++..|.+. +.+|.+++.+++-++..++.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~-g~~V~~~~~~~~~~~~~~~~   47 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKA-GYSLVVSDRNPEAIADVIAA   47 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHT
T ss_pred             ceEEEECchHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHC
Confidence            489999999  44566666654 67899999999887766554

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=90.63  E-value=1.2  Score=43.73  Aligned_cols=97  Identities=16%  Similarity=0.174  Sum_probs=63.7

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCC-CEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLD-FEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+|||.|+|+ |.++..+.+..+ ..+.+++.+++-++.|+++ |..  .-+...-.|..+.++.+.            
T Consensus       161 g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~l-Ga~--~~i~~~~~~~~~~~~~~~------------  225 (346)
T 4a2c_A          161 NKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSF-GAM--QTFNSSEMSAPQMQSVLR------------  225 (346)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT-TCS--EEEETTTSCHHHHHHHHG------------
T ss_pred             CCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHc-CCe--EEEeCCCCCHHHHHHhhc------------
Confidence            56899999885 445555666665 4778999999999999874 532  111111235555555532            


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                     ....+|+|+-.+       |         ..+.++.+.+.|+++|.+++-
T Consensus       226 ---------------~~~g~d~v~d~~-------G---------~~~~~~~~~~~l~~~G~~v~~  259 (346)
T 4a2c_A          226 ---------------ELRFNQLILETA-------G---------VPQTVELAVEIAGPHAQLALV  259 (346)
T ss_dssp             ---------------GGCSSEEEEECS-------C---------SHHHHHHHHHHCCTTCEEEEC
T ss_pred             ---------------ccCCcccccccc-------c---------ccchhhhhhheecCCeEEEEE
Confidence                           234578776521       1         156788889999999998863

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=90.63  E-value=0.34  Score=47.39  Aligned_cols=41  Identities=12%  Similarity=0.055  Sum_probs=32.1

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHh
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQY  304 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~  304 (478)
                      ..+|.+||+|  |..++..|.+. +.+|++++.+++.++.+.+.
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~-G~~V~~~dr~~~~~~~~~~~   49 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRA-GLSTWGADLNPQACANLLAE   49 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHc
Confidence            5689999999  45566666654 67999999999988876653

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=90.56  E-value=1.6  Score=37.80  Aligned_cols=55  Identities=16%  Similarity=0.149  Sum_probs=35.4

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECC-hHHHHHHHHhcCCCCCCCeEEEEchHHH
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMD-EVVLRVARQYFGLEDGEFLQVSVGDAIE  322 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiD-p~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~  322 (478)
                      ..+++|+|+|  |..++..|.+. +.+|+++|.| ++-.+...+.+.    ..+.++.+|+.+
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~-g~~V~vid~~~~~~~~~~~~~~~----~~~~~i~gd~~~   60 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQR-GQNVTVISNLPEDDIKQLEQRLG----DNADVIPGDSND   60 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHC----TTCEEEESCTTS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHC-CCCEEEEECCChHHHHHHHHhhc----CCCeEEEcCCCC
Confidence            3689999976  23345555442 6799999998 455544333332    247889999863

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=90.38  E-value=0.93  Score=44.88  Aligned_cols=43  Identities=19%  Similarity=0.215  Sum_probs=33.8

Q ss_pred             CCeEEEEeC--chhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcC
Q 038592          263 RPKALCVGV--GGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFG  306 (478)
Q Consensus       263 ~~~VLvIGl--GgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg  306 (478)
                      ..+|||+|+  |.|.++..+.+..+.+|.+++.+++-++.+++ +|
T Consensus       167 g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~-~g  211 (343)
T 2eih_A          167 GDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKA-LG  211 (343)
T ss_dssp             TCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-HT
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-cC
Confidence            468999998  34556655666668899999999999999976 45

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=90.34  E-value=1.5  Score=45.33  Aligned_cols=43  Identities=16%  Similarity=0.207  Sum_probs=34.2

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCCEEEEEECChHHHHHHHHhcC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDFEVVGVEMDEVVLRVARQYFG  306 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg  306 (478)
                      +.+|+|||+|. |..+..+...++.+|+++|.++..++.+++ +|
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~-~G  233 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVAS-LG  233 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHH-TT
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH-cC
Confidence            67999999994 544444555678899999999999999887 45

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=90.30  E-value=1.1  Score=44.74  Aligned_cols=95  Identities=19%  Similarity=0.218  Sum_probs=59.9

Q ss_pred             CCeEEEEeC--chhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGV--GGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGl--GgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+|||.|+  |.|..+..+.+..+.+|.+++.+++-++.++++ |..  .-+.....|..+-+.+..            
T Consensus       171 g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~-ga~--~~~d~~~~~~~~~~~~~~------------  235 (351)
T 1yb5_A          171 GESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQN-GAH--EVFNHREVNYIDKIKKYV------------  235 (351)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT-TCS--EEEETTSTTHHHHHHHHH------------
T ss_pred             cCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHc-CCC--EEEeCCCchHHHHHHHHc------------
Confidence            468999997  345555555555678999999999999988764 431  111111123344443321            


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                     ....+|+||.-+                 ..+.+..+.+.|+++|.+++
T Consensus       236 ---------------~~~~~D~vi~~~-----------------G~~~~~~~~~~l~~~G~iv~  267 (351)
T 1yb5_A          236 ---------------GEKGIDIIIEML-----------------ANVNLSKDLSLLSHGGRVIV  267 (351)
T ss_dssp             ---------------CTTCEEEEEESC-----------------HHHHHHHHHHHEEEEEEEEE
T ss_pred             ---------------CCCCcEEEEECC-----------------ChHHHHHHHHhccCCCEEEE
Confidence                           234699997621                 12356778899999998875

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=90.30  E-value=1.4  Score=43.19  Aligned_cols=106  Identities=11%  Similarity=0.013  Sum_probs=65.1

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+|.+||+|  |..++..|.+. +.+|++++.+++-++.+.+. |.      + ...|..+.+++              
T Consensus        21 m~~I~iIG~G~mG~~~A~~l~~~-G~~V~~~dr~~~~~~~l~~~-g~------~-~~~~~~~~~~~--------------   77 (310)
T 3doj_A           21 MMEVGFLGLGIMGKAMSMNLLKN-GFKVTVWNRTLSKCDELVEH-GA------S-VCESPAEVIKK--------------   77 (310)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSGGGGHHHHHT-TC------E-ECSSHHHHHHH--------------
T ss_pred             CCEEEEECccHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHC-CC------e-EcCCHHHHHHh--------------
Confidence            5789999999  45566666654 67999999999988776653 32      1 23344444432              


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHH---HHHHHccCcCcEEEEEeCCCCchHHHHH
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVL---LAARLILSDFGIFVMNVIPPNRSFYDML  417 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl---~~~~~~L~~~Gilv~N~~~~~~~~~~~v  417 (478)
                                         .|+||+-+            |..-...+.+   +.+...|+++ .+++++.+..+...+.+
T Consensus        78 -------------------aDvvi~~v------------p~~~~~~~v~~~~~~l~~~l~~g-~~vv~~st~~~~~~~~~  125 (310)
T 3doj_A           78 -------------------CKYTIAML------------SDPCAALSVVFDKGGVLEQICEG-KGYIDMSTVDAETSLKI  125 (310)
T ss_dssp             -------------------CSEEEECC------------SSHHHHHHHHHSTTCGGGGCCTT-CEEEECSCCCHHHHHHH
T ss_pred             -------------------CCEEEEEc------------CCHHHHHHHHhCchhhhhccCCC-CEEEECCCCCHHHHHHH
Confidence                               58999833            2111123344   4445566664 55677776666655555


Q ss_pred             HHHHHH
Q 038592          418 IQEFRD  423 (478)
Q Consensus       418 ~~~l~~  423 (478)
                      ...+.+
T Consensus       126 ~~~~~~  131 (310)
T 3doj_A          126 NEAITG  131 (310)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555555

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=90.17  E-value=0.9  Score=46.54  Aligned_cols=37  Identities=24%  Similarity=0.206  Sum_probs=28.9

Q ss_pred             eEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHH
Q 038592          265 KALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQ  303 (478)
Q Consensus       265 ~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~  303 (478)
                      +|.|||+|  |+.++..|.+  +.+|+++|++++.++..++
T Consensus         2 kI~VIG~G~vG~~~A~~La~--G~~V~~~d~~~~~~~~l~~   40 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL--QNEVTIVDILPSKVDKINN   40 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT--TSEEEEECSCHHHHHHHHT
T ss_pred             EEEEECCCHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHc
Confidence            78999999  4456665654  6899999999998876654

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=90.16  E-value=0.41  Score=47.79  Aligned_cols=91  Identities=13%  Similarity=0.278  Sum_probs=59.8

Q ss_pred             CeEEEEeCch-hHHH-HHHH-hhCCCE-EEEEECChH---HHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCC
Q 038592          264 PKALCVGVGG-GALV-SFLR-TQLDFE-VVGVEMDEV---VLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNP  336 (478)
Q Consensus       264 ~~VLvIGlGg-G~L~-~~L~-~~~~~~-V~~VEiDp~---Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~  336 (478)
                      .+|||+|+|+ |.++ ..+. +..+.+ |.+++.+++   -.+.|++ +|..   .+.....|..+ +.+.         
T Consensus       174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~-lGa~---~v~~~~~~~~~-i~~~---------  239 (357)
T 2b5w_A          174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEE-LDAT---YVDSRQTPVED-VPDV---------  239 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHH-TTCE---EEETTTSCGGG-HHHH---------
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHH-cCCc---ccCCCccCHHH-HHHh---------
Confidence            7999999853 6666 6666 667776 999999998   8888876 4531   11000123334 4431         


Q ss_pred             CCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          337 DSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                         .+ .+|+||--+       |         ....++.+.+.|+++|.+++
T Consensus       240 -------------------~g-g~Dvvid~~-------g---------~~~~~~~~~~~l~~~G~iv~  271 (357)
T 2b5w_A          240 -------------------YE-QMDFIYEAT-------G---------FPKHAIQSVQALAPNGVGAL  271 (357)
T ss_dssp             -------------------SC-CEEEEEECS-------C---------CHHHHHHHHHHEEEEEEEEE
T ss_pred             -------------------CC-CCCEEEECC-------C---------ChHHHHHHHHHHhcCCEEEE
Confidence                               12 699987511       1         13467888999999998875

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=90.09  E-value=0.73  Score=45.47  Aligned_cols=93  Identities=18%  Similarity=0.247  Sum_probs=62.3

Q ss_pred             CCeEEEEeC--chhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEE---chHHHHHHHHHhhhcCCCCC
Q 038592          263 RPKALCVGV--GGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSV---GDAIEFLEKLARQIVGKNPD  337 (478)
Q Consensus       263 ~~~VLvIGl--GgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v---~Dg~~~l~~~~~~~~~~~~~  337 (478)
                      ..+|||+|+  |.|.++..+.+..+.+|.+++.+++-++.+++.+|..    ..+-.   .|..+.+++.          
T Consensus       156 g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~~----~~~d~~~~~~~~~~~~~~----------  221 (345)
T 2j3h_A          156 GETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFD----DAFNYKEESDLTAALKRC----------  221 (345)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCCS----EEEETTSCSCSHHHHHHH----------
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCc----eEEecCCHHHHHHHHHHH----------
Confidence            468999996  3455555555566789999999999999998656642    11111   1334444442          


Q ss_pred             CCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          338 SFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                        ....+|+||.-+       |          .+.++.+.+.|+++|.+++
T Consensus       222 ------------------~~~~~d~vi~~~-------g----------~~~~~~~~~~l~~~G~~v~  253 (345)
T 2j3h_A          222 ------------------FPNGIDIYFENV-------G----------GKMLDAVLVNMNMHGRIAV  253 (345)
T ss_dssp             ------------------CTTCEEEEEESS-------C----------HHHHHHHHTTEEEEEEEEE
T ss_pred             ------------------hCCCCcEEEECC-------C----------HHHHHHHHHHHhcCCEEEE
Confidence                              224699988621       1          2367888899999998875

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=90.02  E-value=1.4  Score=44.13  Aligned_cols=45  Identities=20%  Similarity=0.240  Sum_probs=35.0

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL  307 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~  307 (478)
                      ..+|||+|.|+ |.++..+.+..+.+|.+++.+++-.+.+++-+|.
T Consensus       188 g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa  233 (366)
T 1yqd_A          188 GKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGA  233 (366)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCC
Confidence            46999999763 5555556666788999999999988888866774

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=90.01  E-value=1.8  Score=42.68  Aligned_cols=106  Identities=12%  Similarity=0.054  Sum_probs=64.5

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+|.+||+|  |..++..|.+. +.+|++++.+++-++...+. |      ++ ...|..+.+                
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~~-G~~V~~~dr~~~~~~~l~~~-g------~~-~~~~~~e~~----------------   85 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCEA-GYALQVWNRTPARAASLAAL-G------AT-IHEQARAAA----------------   85 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHTT-T------CE-EESSHHHHH----------------
T ss_pred             CCEEEEECccHHHHHHHHHHHhC-CCeEEEEcCCHHHHHHHHHC-C------CE-eeCCHHHHH----------------
Confidence            4699999999  44566666654 67999999999987766543 2      22 233444433                


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHH--HHHHccCcCcEEEEEeCCCCchHHHHHH
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLL--AARLILSDFGIFVMNVIPPNRSFYDMLI  418 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~--~~~~~L~~~Gilv~N~~~~~~~~~~~v~  418 (478)
                                       ...|+||+-+            |..-...+.+.  .+...|+++ .+++++.+......+.+.
T Consensus        86 -----------------~~aDvVi~~v------------p~~~~~~~v~~~~~~~~~l~~~-~~vi~~st~~~~~~~~~~  135 (320)
T 4dll_A           86 -----------------RDADIVVSML------------ENGAVVQDVLFAQGVAAAMKPG-SLFLDMASITPREARDHA  135 (320)
T ss_dssp             -----------------TTCSEEEECC------------SSHHHHHHHHTTTCHHHHCCTT-CEEEECSCCCHHHHHHHH
T ss_pred             -----------------hcCCEEEEEC------------CCHHHHHHHHcchhHHhhCCCC-CEEEecCCCCHHHHHHHH
Confidence                             1259999843            21112234444  455667764 456677666565555555


Q ss_pred             HHHHH
Q 038592          419 QEFRD  423 (478)
Q Consensus       419 ~~l~~  423 (478)
                      ..+++
T Consensus       136 ~~~~~  140 (320)
T 4dll_A          136 ARLGA  140 (320)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55554

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=89.91  E-value=0.28  Score=48.04  Aligned_cols=43  Identities=19%  Similarity=0.162  Sum_probs=37.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcC
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFG  306 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg  306 (478)
                      ...||.+++|+|+++..+.. .+.++++||++|.++++|++.+.
T Consensus       236 ~~~vlD~f~GsGt~~~~a~~-~g~~~~g~e~~~~~~~~a~~r~~  278 (297)
T 2zig_A          236 GDVVLDPFAGTGTTLIAAAR-WGRRALGVELVPRYAQLAKERFA  278 (297)
T ss_dssp             TCEEEETTCTTTHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHH-cCCeEEEEeCCHHHHHHHHHHHH
Confidence            45899999999999987765 47899999999999999998763

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=89.90  E-value=3.1  Score=43.61  Aligned_cols=101  Identities=10%  Similarity=0.052  Sum_probs=63.2

Q ss_pred             eEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCC-CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          265 KALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLED-GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       265 ~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~-d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      +|.|||+|  |+.++..|.+. +.+|.+++.+++.++...+.+|... ..++. ...|..++++.               
T Consensus         3 kIgVIG~G~mG~~lA~~La~~-G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~-~~~~~~e~v~~---------------   65 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEK-GFKVAVFNRTYSKSEEFMKANASAPFAGNLK-AFETMEAFAAS---------------   65 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCEEEECSSHHHHHHHHHHTTTSTTGGGEE-ECSCHHHHHHH---------------
T ss_pred             EEEEEChHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhcCCCCCCCCeE-EECCHHHHHhc---------------
Confidence            79999999  55677666654 5789999999998887766555321 12232 23444444432               


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPN  410 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~  410 (478)
                                     -+..|+||+=+            |..-...++++.+...|+++- +++++.+..
T Consensus        66 ---------------l~~aDvVilaV------------p~~~~v~~vl~~l~~~l~~g~-iIId~sng~  106 (478)
T 1pgj_A           66 ---------------LKKPRKALILV------------QAGAATDSTIEQLKKVFEKGD-ILVDTGNAH  106 (478)
T ss_dssp             ---------------BCSSCEEEECC------------CCSHHHHHHHHHHHHHCCTTC-EEEECCCCC
T ss_pred             ---------------ccCCCEEEEec------------CChHHHHHHHHHHHhhCCCCC-EEEECCCCC
Confidence                           12479999933            221124677888888898765 455665443

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=89.89  E-value=0.45  Score=47.52  Aligned_cols=94  Identities=14%  Similarity=0.092  Sum_probs=60.6

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+|||+|++  .|.++..+.+..+.+|.+++.+++-++.+++. |..  .-+.....|..+.+.+.             
T Consensus       168 g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~l-Ga~--~~~~~~~~~~~~~~~~~-------------  231 (353)
T 4dup_A          168 GESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERL-GAK--RGINYRSEDFAAVIKAE-------------  231 (353)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-TCS--EEEETTTSCHHHHHHHH-------------
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc-CCC--EEEeCCchHHHHHHHHH-------------
Confidence            5689999643  46666666666788999999999999999874 532  11111112444444442             


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                     ....+|+||--+       |          .+.++.+.+.|+++|.+++
T Consensus       232 ---------------~~~g~Dvvid~~-------g----------~~~~~~~~~~l~~~G~iv~  263 (353)
T 4dup_A          232 ---------------TGQGVDIILDMI-------G----------AAYFERNIASLAKDGCLSI  263 (353)
T ss_dssp             ---------------HSSCEEEEEESC-------C----------GGGHHHHHHTEEEEEEEEE
T ss_pred             ---------------hCCCceEEEECC-------C----------HHHHHHHHHHhccCCEEEE
Confidence                           234699887621       1          1146778889999998774

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=89.88  E-value=0.97  Score=45.34  Aligned_cols=92  Identities=14%  Similarity=0.139  Sum_probs=62.3

Q ss_pred             CCeEEEEe-Cc-hhHHHHHHHhh-CCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEE--chHHHHHHHHHhhhcCCCCC
Q 038592          263 RPKALCVG-VG-GGALVSFLRTQ-LDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSV--GDAIEFLEKLARQIVGKNPD  337 (478)
Q Consensus       263 ~~~VLvIG-lG-gG~L~~~L~~~-~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v--~Dg~~~l~~~~~~~~~~~~~  337 (478)
                      ..+|||+| .| .|.++..+.+. .+.+|.+++.+++-.+.+++ +|..     .++.  .|..+.+++           
T Consensus       172 g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~-lGad-----~vi~~~~~~~~~v~~-----------  234 (363)
T 4dvj_A          172 APAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS-LGAH-----HVIDHSKPLAAEVAA-----------  234 (363)
T ss_dssp             EEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH-TTCS-----EEECTTSCHHHHHHT-----------
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH-cCCC-----EEEeCCCCHHHHHHH-----------
Confidence            45899999 44 47777777776 47899999999999999987 5642     1111  132333322           


Q ss_pred             CCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          338 SFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                       .....+|+||--+                -..+.++.+.+.|+++|.+++
T Consensus       235 -----------------~~~~g~Dvvid~~----------------g~~~~~~~~~~~l~~~G~iv~  268 (363)
T 4dvj_A          235 -----------------LGLGAPAFVFSTT----------------HTDKHAAEIADLIAPQGRFCL  268 (363)
T ss_dssp             -----------------TCSCCEEEEEECS----------------CHHHHHHHHHHHSCTTCEEEE
T ss_pred             -----------------hcCCCceEEEECC----------------CchhhHHHHHHHhcCCCEEEE
Confidence                             1345799887521                124578889999999999885

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=89.82  E-value=0.9  Score=45.16  Aligned_cols=92  Identities=13%  Similarity=0.190  Sum_probs=60.9

Q ss_pred             CeEEEEeCc--hhHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCCCCCCCeEEEE--chHHHHHHHHHhhhcCCCCCC
Q 038592          264 PKALCVGVG--GGALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGLEDGEFLQVSV--GDAIEFLEKLARQIVGKNPDS  338 (478)
Q Consensus       264 ~~VLvIGlG--gG~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v--~Dg~~~l~~~~~~~~~~~~~~  338 (478)
                      .+|||.|++  .|.++..+.+..+. +|.+++.+++-.+.+++.+|..    ..+-.  .|..+.+.+.           
T Consensus       162 ~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~----~~~d~~~~~~~~~~~~~-----------  226 (357)
T 2zb4_A          162 KTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFD----AAINYKKDNVAEQLRES-----------  226 (357)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCS----EEEETTTSCHHHHHHHH-----------
T ss_pred             cEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCc----eEEecCchHHHHHHHHh-----------
Confidence            799999973  35555555555677 9999999999888888766642    11111  2334444432           


Q ss_pred             CCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          339 FGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                       ....+|++|--+       |          .+.++.+.+.|+++|.+++
T Consensus       227 -----------------~~~~~d~vi~~~-------G----------~~~~~~~~~~l~~~G~iv~  258 (357)
T 2zb4_A          227 -----------------CPAGVDVYFDNV-------G----------GNISDTVISQMNENSHIIL  258 (357)
T ss_dssp             -----------------CTTCEEEEEESC-------C----------HHHHHHHHHTEEEEEEEEE
T ss_pred             -----------------cCCCCCEEEECC-------C----------HHHHHHHHHHhccCcEEEE
Confidence                             122699988621       1          2567888899999998874

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=89.77  E-value=0.97  Score=44.81  Aligned_cols=93  Identities=15%  Similarity=0.118  Sum_probs=61.1

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEE---EchHHHHHHHHHhhhcCCCCC
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVS---VGDAIEFLEKLARQIVGKNPD  337 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~---v~Dg~~~l~~~~~~~~~~~~~  337 (478)
                      ..+|||+|++  .|.....+.+..+.+|.+++.+++-.+.+++ +|..    ..+-   ..|..+.+++..         
T Consensus       170 g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~-~g~~----~~~d~~~~~~~~~~~~~~~---------  235 (347)
T 2hcy_A          170 GHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRS-IGGE----VFIDFTKEKDIVGAVLKAT---------  235 (347)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHH-TTCC----EEEETTTCSCHHHHHHHHH---------
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHH-cCCc----eEEecCccHhHHHHHHHHh---------
Confidence            4689999983  4555555555567899999999998888876 4531    1111   124444554421         


Q ss_pred             CCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          338 SFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                        .. .+|+||.-+       |         ..+.++.+.+.|+++|.++.
T Consensus       236 ------------------~~-~~D~vi~~~-------g---------~~~~~~~~~~~l~~~G~iv~  267 (347)
T 2hcy_A          236 ------------------DG-GAHGVINVS-------V---------SEAAIEASTRYVRANGTTVL  267 (347)
T ss_dssp             ------------------TS-CEEEEEECS-------S---------CHHHHHHHTTSEEEEEEEEE
T ss_pred             ------------------CC-CCCEEEECC-------C---------cHHHHHHHHHHHhcCCEEEE
Confidence                              23 699998722       1         13578888899999998764

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=89.75  E-value=1  Score=44.73  Aligned_cols=92  Identities=9%  Similarity=0.100  Sum_probs=62.3

Q ss_pred             CCeEEEEeC-c-hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEE--chHHHHHHHHHhhhcCCCCCC
Q 038592          263 RPKALCVGV-G-GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSV--GDAIEFLEKLARQIVGKNPDS  338 (478)
Q Consensus       263 ~~~VLvIGl-G-gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v--~Dg~~~l~~~~~~~~~~~~~~  338 (478)
                      ..+|||+|+ | .|.++..+.+..+.+|.+++.+++-++.+++ +|..     .++.  .|..+.+++.           
T Consensus       151 g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~-lGa~-----~vi~~~~~~~~~~~~~-----------  213 (346)
T 3fbg_A          151 GKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKK-MGAD-----IVLNHKESLLNQFKTQ-----------  213 (346)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHH-HTCS-----EEECTTSCHHHHHHHH-----------
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-cCCc-----EEEECCccHHHHHHHh-----------
Confidence            468999953 3 3566666666778899999999999999988 4532     1111  2333444332           


Q ss_pred             CCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          339 FGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                       ....+|+|+--+                -....++.+.+.|+++|.++.
T Consensus       214 -----------------~~~g~Dvv~d~~----------------g~~~~~~~~~~~l~~~G~iv~  246 (346)
T 3fbg_A          214 -----------------GIELVDYVFCTF----------------NTDMYYDDMIQLVKPRGHIAT  246 (346)
T ss_dssp             -----------------TCCCEEEEEESS----------------CHHHHHHHHHHHEEEEEEEEE
T ss_pred             -----------------CCCCccEEEECC----------------CchHHHHHHHHHhccCCEEEE
Confidence                             245699887611                125678889999999999874

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=89.52  E-value=0.68  Score=48.90  Aligned_cols=113  Identities=12%  Similarity=0.105  Sum_probs=66.8

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcC-----CCCCCCeEEEEchHHHHHHHHHhhhcCCC
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFG-----LEDGEFLQVSVGDAIEFLEKLARQIVGKN  335 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg-----~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~  335 (478)
                      ..+|.|||+|  |++++..+.+. +.+|+++|++++.++.++++..     +....++.  ..+....+..+ .      
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~a-G~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~--~~~~~~~~~~i-~------   74 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASH-GHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLT--AETCERTLKRL-I------   74 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHT-TCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSC--HHHHHHHHHTE-E------
T ss_pred             CCEEEEECcCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCC--HHHHHHHHhce-e------
Confidence            3589999999  56677666654 6799999999999998876521     11111110  00001111100 0      


Q ss_pred             CCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC-ChHHHHHHHHHccCcCcEEEEEeCCCCc
Q 038592          336 PDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF-VRKDVLLAARLILSDFGIFVMNVIPPNR  411 (478)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f-~~~efl~~~~~~L~~~Gilv~N~~~~~~  411 (478)
                        ...       +     ...-..-|+||.-+            |+.. ...+++..+...++++-+++.|..+-..
T Consensus        75 --~~~-------~-----~~~~~~aDlVIeAV------------pe~~~vk~~v~~~l~~~~~~~~IlasntSti~i  125 (483)
T 3mog_A           75 --PVT-------D-----IHALAAADLVIEAA------------SERLEVKKALFAQLAEVCPPQTLLTTNTSSISI  125 (483)
T ss_dssp             --EEC-------C-----GGGGGGCSEEEECC------------CCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCH
T ss_pred             --EeC-------C-----HHHhcCCCEEEEcC------------CCcHHHHHHHHHHHHHhhccCcEEEecCCCCCH
Confidence              000       0     00113469999833            3332 3468899999999999999888877643

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=89.44  E-value=3.8  Score=43.05  Aligned_cols=113  Identities=12%  Similarity=-0.009  Sum_probs=68.9

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      +++|.+||+|  |+.++..|.+. +.+|.+++.+++.++...+..+   ++.++. ..|..+.+++              
T Consensus        15 ~~~IgvIGlG~MG~~lA~~La~~-G~~V~v~~r~~~~~~~l~~~~~---~~gi~~-~~s~~e~v~~--------------   75 (480)
T 2zyd_A           15 KQQIGVVGMAVMGRNLALNIESR-GYTVSIFNRSREKTEEVIAENP---GKKLVP-YYTVKEFVES--------------   75 (480)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHTT-TCCEEEECSSHHHHHHHHHHST---TSCEEE-CSSHHHHHHT--------------
T ss_pred             CCeEEEEccHHHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHhhCC---CCCeEE-eCCHHHHHhC--------------
Confidence            5689999999  55677766653 6789999999998876655432   122332 2344444321              


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHH
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQE  420 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~  420 (478)
                                      -.+.|+||+-+            |..-...++++.+...|+++- +++++.+........+.+.
T Consensus        76 ----------------l~~aDvVil~V------------p~~~~v~~vl~~l~~~l~~g~-iIId~s~g~~~~t~~l~~~  126 (480)
T 2zyd_A           76 ----------------LETPRRILLMV------------KAGAGTDAAIDSLKPYLDKGD-IIIDGGNTFFQDTIRRNRE  126 (480)
T ss_dssp             ----------------BCSSCEEEECS------------CSSSHHHHHHHHHGGGCCTTC-EEEECSCCCHHHHHHHHHH
T ss_pred             ----------------CCCCCEEEEEC------------CCHHHHHHHHHHHHhhcCCCC-EEEECCCCCHHHHHHHHHH
Confidence                            12479999943            221134678888888888755 5557766544333333444


Q ss_pred             HHH
Q 038592          421 FRD  423 (478)
Q Consensus       421 l~~  423 (478)
                      +.+
T Consensus       127 l~~  129 (480)
T 2zyd_A          127 LSA  129 (480)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=89.38  E-value=0.67  Score=47.56  Aligned_cols=43  Identities=26%  Similarity=0.336  Sum_probs=32.9

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCCEEEEEECChHHHHHHHHhcC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDFEVVGVEMDEVVLRVARQYFG  306 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg  306 (478)
                      +.+|+|||+|. |..+..+...++.+|+++|.++..++.+++ +|
T Consensus       184 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~-lG  227 (381)
T 3p2y_A          184 PASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRS-VG  227 (381)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHH-TT
T ss_pred             CCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cC
Confidence            67999999994 444333444458899999999999998877 44

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=89.38  E-value=2.2  Score=41.33  Aligned_cols=95  Identities=14%  Similarity=0.045  Sum_probs=62.8

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCC
Q 038592          263 RPKALCVGVG--GGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDS  338 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~  338 (478)
                      ..+|.+||+|  |++++..|.+.-  ..+|.+++.+++-++...+.+|.      ++ ..|..+.+              
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi------~~-~~~~~~~~--------------   61 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGV------HT-TQDNRQGA--------------   61 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCC------EE-ESCHHHHH--------------
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCC------EE-eCChHHHH--------------
Confidence            3589999999  566777776642  23899999999988877765553      22 33444433              


Q ss_pred             CCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHc-cCcCcEEEEEeCCCC
Q 038592          339 FGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLI-LSDFGIFVMNVIPPN  410 (478)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~-L~~~Gilv~N~~~~~  410 (478)
                                         ...|+||+-+           ||.  .-.+.++.++.. |+++-+++.+..+-.
T Consensus        62 -------------------~~aDvVilav-----------~p~--~~~~vl~~l~~~~l~~~~iiiS~~agi~  102 (280)
T 3tri_A           62 -------------------LNADVVVLAV-----------KPH--QIKMVCEELKDILSETKILVISLAVGVT  102 (280)
T ss_dssp             -------------------SSCSEEEECS-----------CGG--GHHHHHHHHHHHHHTTTCEEEECCTTCC
T ss_pred             -------------------hcCCeEEEEe-----------CHH--HHHHHHHHHHhhccCCCeEEEEecCCCC
Confidence                               1369999933           232  347888999888 877656664444433

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=89.35  E-value=2.9  Score=40.20  Aligned_cols=40  Identities=18%  Similarity=0.219  Sum_probs=30.4

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHH
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQ  303 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~  303 (478)
                      +.+|.+||+|  |+.++..|.+. +.+|++++.+++-.+...+
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~-g~~V~~~~~~~~~~~~~~~   45 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKE-GVTVYAFDLMEANVAAVVA   45 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHT-TCEEEEECSSHHHHHHHHT
T ss_pred             CCEEEEECccHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHH
Confidence            4689999999  45566666653 6799999999987776554

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=89.19  E-value=0.81  Score=45.82  Aligned_cols=91  Identities=16%  Similarity=0.196  Sum_probs=61.4

Q ss_pred             CCeEEEEeC--chhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEE---chHHHHHHHHHhhhcCCCCC
Q 038592          263 RPKALCVGV--GGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSV---GDAIEFLEKLARQIVGKNPD  337 (478)
Q Consensus       263 ~~~VLvIGl--GgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v---~Dg~~~l~~~~~~~~~~~~~  337 (478)
                      ..+|||+|+  |.|.++..+.+..+.+|.+++.+++-++.+++ +|..     .++.   .|..+.+++.          
T Consensus       164 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~-~Ga~-----~~~~~~~~~~~~~~~~~----------  227 (362)
T 2c0c_A          164 GKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS-LGCD-----RPINYKTEPVGTVLKQE----------  227 (362)
T ss_dssp             TCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-TTCS-----EEEETTTSCHHHHHHHH----------
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH-cCCc-----EEEecCChhHHHHHHHh----------
Confidence            469999993  35666666666678899999999999999987 5532     1211   2333444331          


Q ss_pred             CCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          338 SFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                        ....+|+||--+       |          ...++.+.+.|+++|.+++
T Consensus       228 ------------------~~~g~D~vid~~-------g----------~~~~~~~~~~l~~~G~iv~  259 (362)
T 2c0c_A          228 ------------------YPEGVDVVYESV-------G----------GAMFDLAVDALATKGRLIV  259 (362)
T ss_dssp             ------------------CTTCEEEEEECS-------C----------THHHHHHHHHEEEEEEEEE
T ss_pred             ------------------cCCCCCEEEECC-------C----------HHHHHHHHHHHhcCCEEEE
Confidence                              234699988621       1          1367888899999998875

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=89.19  E-value=2.2  Score=43.46  Aligned_cols=117  Identities=15%  Similarity=0.054  Sum_probs=70.8

Q ss_pred             CeEEEEeCchhHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          264 PKALCVGVGGGALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       264 ~~VLvIGlGgG~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      .+++.+-+|.|++...+.+. ++ .|.+||+|+..++..+..|.     ...++.+|..++..+.....           
T Consensus         3 ~~vidLFsG~GGlslG~~~a-G~~~v~avE~d~~a~~t~~~N~~-----~~~~~~~DI~~~~~~~~~~~-----------   65 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARA-GFDVKMAVEIDQHAINTHAINFP-----RSLHVQEDVSLLNAEIIKGF-----------   65 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHH-TCEEEEEECSCHHHHHHHHHHCT-----TSEEECCCGGGCCHHHHHHH-----------
T ss_pred             CeEEEEccCcCHHHHHHHHC-CCcEEEEEeCCHHHHHHHHHhCC-----CCceEecChhhcCHHHHHhh-----------
Confidence            48999999999998888765 45 46799999999999998874     35778888876532211000           


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCC-CCCCC--CCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARN-GTSAP--PVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~-g~s~P--p~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                 ......+|+|+.+..+.+-+. |-...  +..-+-.+|++.+. .++|.=+++=||..-
T Consensus        66 -----------~~~~~~~D~i~ggpPCQ~fS~ag~~~~~d~r~~L~~~~~~~v~-~~~P~~~v~ENV~gl  123 (376)
T 3g7u_A           66 -----------FKNDMPIDGIIGGPPCQGFSSIGKGNPDDSRNQLYMHFYRLVS-ELQPLFFLAENVPGI  123 (376)
T ss_dssp             -----------HCSCCCCCEEEECCCCCTTC-------CHHHHHHHHHHHHHHH-HHCCSEEEEEECTTT
T ss_pred             -----------cccCCCeeEEEecCCCCCcccccCCCCCCchHHHHHHHHHHHH-HhCCCEEEEecchHh
Confidence                       002356999999654322110 10000  00012234444443 468876666698664

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=89.12  E-value=0.55  Score=46.94  Aligned_cols=44  Identities=20%  Similarity=0.284  Sum_probs=34.9

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL  307 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~  307 (478)
                      ..+|||+|+|+ |.++..+.+..+.+|.+++.+++-++.|++ +|.
T Consensus       180 g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~-lGa  224 (360)
T 1piw_A          180 GKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMK-MGA  224 (360)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH-HTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH-cCC
Confidence            46999999863 666666666668899999999999999987 563

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=89.09  E-value=3.1  Score=41.93  Aligned_cols=44  Identities=16%  Similarity=0.270  Sum_probs=32.2

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCCEEEEEECChHHHHHHHHhcC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDFEVVGVEMDEVVLRVARQYFG  306 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg  306 (478)
                      +.+|+|+|+|+ |.....+....+.+|+++|.+++-++.+++.++
T Consensus       166 ~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g  210 (369)
T 2eez_A          166 PASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFG  210 (369)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcC
Confidence            57999999963 333333333457899999999998888877665

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=89.01  E-value=1.8  Score=44.38  Aligned_cols=43  Identities=19%  Similarity=0.186  Sum_probs=33.5

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCCEEEEEECChHHHHHHHHhcC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDFEVVGVEMDEVVLRVARQYFG  306 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg  306 (478)
                      +.+|+|+|+|. |..+..+...++.+|+++|.++...+.++++ |
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~l-G  215 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSM-G  215 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHT-T
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHc-C
Confidence            67999999984 5444445556788999999999998888654 5

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=88.96  E-value=1.5  Score=42.31  Aligned_cols=105  Identities=11%  Similarity=0.073  Sum_probs=63.7

Q ss_pred             CeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          264 PKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       264 ~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      .+|.+||+|  |..++..|.+. +.+|++++.+++-++...+. |.      + ...|..+.+++               
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~-G~~V~~~dr~~~~~~~~~~~-g~------~-~~~~~~~~~~~---------------   57 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRA-GFDVTVWNRNPAKCAPLVAL-GA------R-QASSPAEVCAA---------------   57 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHH-TCCEEEECSSGGGGHHHHHH-TC------E-ECSCHHHHHHH---------------
T ss_pred             CeEEEEccCHHHHHHHHHHHHC-CCeEEEEcCCHHHHHHHHHC-CC------e-ecCCHHHHHHc---------------
Confidence            479999999  45577666655 67899999999887766554 21      1 23344444432               


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHH---HHHHHccCcCcEEEEEeCCCCchHHHHHH
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVL---LAARLILSDFGIFVMNVIPPNRSFYDMLI  418 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl---~~~~~~L~~~Gilv~N~~~~~~~~~~~v~  418 (478)
                                        .|+||+-+            |..-...+.+   +.+...|+++. +++++.+......+.+.
T Consensus        58 ------------------advvi~~v------------~~~~~~~~v~~~~~~l~~~l~~g~-~vv~~st~~~~~~~~~~  106 (287)
T 3pdu_A           58 ------------------CDITIAML------------ADPAAAREVCFGANGVLEGIGGGR-GYIDMSTVDDETSTAIG  106 (287)
T ss_dssp             ------------------CSEEEECC------------SSHHHHHHHHHSTTCGGGTCCTTC-EEEECSCCCHHHHHHHH
T ss_pred             ------------------CCEEEEEc------------CCHHHHHHHHcCchhhhhcccCCC-EEEECCCCCHHHHHHHH
Confidence                              58999833            2111123444   44556666654 55677766555555555


Q ss_pred             HHHHH
Q 038592          419 QEFRD  423 (478)
Q Consensus       419 ~~l~~  423 (478)
                      +.+.+
T Consensus       107 ~~~~~  111 (287)
T 3pdu_A          107 AAVTA  111 (287)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55554

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=88.91  E-value=1.8  Score=40.86  Aligned_cols=34  Identities=24%  Similarity=0.216  Sum_probs=27.6

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHH
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVV  297 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~V  297 (478)
                      ..+|.+||+|  |++++..|.+. +.+|++++.+++-
T Consensus        19 ~~kIgiIG~G~mG~alA~~L~~~-G~~V~~~~r~~~~   54 (245)
T 3dtt_A           19 GMKIAVLGTGTVGRTMAGALADL-GHEVTIGTRDPKA   54 (245)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC-CCEEEEEeCChhh
Confidence            5799999999  56677777654 6799999999985

>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus}

Probab=88.88  E-value=1.2  Score=43.99  Aligned_cols=74  Identities=15%  Similarity=0.012  Sum_probs=49.3

Q ss_pred             CCceeEEEEeCCCCCCCCCCC---CC-CCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHHHHhcCccEEEe
Q 038592          357 DNKFDVIMVDLDSGDARNGTS---AP-PVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEFRDVFQELYEID  432 (478)
Q Consensus       357 ~~~yDvIivDv~s~d~~~g~s---~P-p~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l~~vF~~v~~~~  432 (478)
                      ..+||+||+|+-....  |..   |- .....+- .+..+.++|+|||.|++=++.-.....+.++..|++.|..+..++
T Consensus       204 ~~k~DvV~SDMApn~s--Gh~yqQC~DHarii~L-al~fA~~vLkPGGtfV~KvyggaDr~se~lv~~LaR~F~~Vr~vK  280 (320)
T 2hwk_A          204 VPKYDIIFVNVRTPYK--YHHYQQCEDHAIKLSM-LTKKACLHLNPGGTCVSIGYGYADRASESIIGAIARQFKFSRVCK  280 (320)
T ss_dssp             SCCEEEEEEECCCCCC--SCHHHHHHHHHHHHHH-THHHHGGGEEEEEEEEEEECCCCSHHHHHHHHHHHTTEEEEEEEC
T ss_pred             cCcCCEEEEcCCCCCC--CccccccchHHHHHHH-HHHHHHHhcCCCceEEEEEecCCcccHHHHHHHHHHhcceeeeeC
Confidence            3679999999743211  210   00 0000011 445666899999999998887754446889999999999998886


Q ss_pred             e
Q 038592          433 V  433 (478)
Q Consensus       433 v  433 (478)
                      .
T Consensus       281 P  281 (320)
T 2hwk_A          281 P  281 (320)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=88.70  E-value=1.9  Score=42.98  Aligned_cols=123  Identities=17%  Similarity=0.125  Sum_probs=78.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      +.+++.+.+|.|++...+... ++ .|.+||+|+..++..+..|+-..       .+|..++..+               
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~a-G~~~v~~~e~d~~a~~t~~~N~~~~~-------~~Di~~~~~~---------------   67 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESC-GAECVYSNEWDKYAQEVYEMNFGEKP-------EGDITQVNEK---------------   67 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHT-TCEEEEEECCCHHHHHHHHHHHSCCC-------BSCGGGSCGG---------------
T ss_pred             CCcEEEECCCcCHHHHHHHHC-CCeEEEEEeCCHHHHHHHHHHcCCCC-------cCCHHHcCHh---------------
Confidence            468999999999999888765 55 57889999999999999886321       5777665321               


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCC-C----CCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC----Cch
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDAR-N----GTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP----NRS  412 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~-~----g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~----~~~  412 (478)
                                    .-..+|+|+.+....+.+ .    |+.. +..-+-.+|++.++. ++|.-+++=||..-    ...
T Consensus        68 --------------~~~~~D~l~~gpPCQ~fS~ag~~~g~~d-~r~~L~~~~~r~i~~-~~P~~~~~ENV~gl~~~~~~~  131 (327)
T 2c7p_A           68 --------------TIPDHDILCAGFPCQAFSISGKQKGFED-SRGTLFFDIARIVRE-KKPKVVFMENVKNFASHDNGN  131 (327)
T ss_dssp             --------------GSCCCSEEEEECCCTTTCTTSCCCGGGS-TTSCHHHHHHHHHHH-HCCSEEEEEEEGGGGTGGGGH
T ss_pred             --------------hCCCCCEEEECCCCCCcchhcccCCCcc-hhhHHHHHHHHHHHh-ccCcEEEEeCcHHHHhccccH
Confidence                          123589999976443322 1    1111 122233566666654 68876666699653    223


Q ss_pred             HHHHHHHHHHHh
Q 038592          413 FYDMLIQEFRDV  424 (478)
Q Consensus       413 ~~~~v~~~l~~v  424 (478)
                      .++.+++.|.+.
T Consensus       132 ~~~~i~~~l~~~  143 (327)
T 2c7p_A          132 TLEVVKNTMNEL  143 (327)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhC
Confidence            456666666553

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=88.68  E-value=0.84  Score=45.27  Aligned_cols=94  Identities=19%  Similarity=0.364  Sum_probs=59.7

Q ss_pred             CCeEEEEeCch--hHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEE--chHHHHHHHHHhhhcCCCCC
Q 038592          263 RPKALCVGVGG--GALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSV--GDAIEFLEKLARQIVGKNPD  337 (478)
Q Consensus       263 ~~~VLvIGlGg--G~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v--~Dg~~~l~~~~~~~~~~~~~  337 (478)
                      ..+|||+|+|+  |.++..+.+.. +.+|.+++.+++-++.++++ |..    ..+..  .|..+.+.+..         
T Consensus       171 g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~-g~~----~~~~~~~~~~~~~~~~~~---------  236 (347)
T 1jvb_A          171 TKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA-GAD----YVINASMQDPLAEIRRIT---------  236 (347)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH-TCS----EEEETTTSCHHHHHHHHT---------
T ss_pred             CCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-CCC----EEecCCCccHHHHHHHHh---------
Confidence            46899999874  34444444455 78999999999999999764 531    11111  23333343321         


Q ss_pred             CCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          338 SFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                        ....+|+||--+  +              ..+.++.+.+.|+++|.+++
T Consensus       237 ------------------~~~~~d~vi~~~--g--------------~~~~~~~~~~~l~~~G~iv~  269 (347)
T 1jvb_A          237 ------------------ESKGVDAVIDLN--N--------------SEKTLSVYPKALAKQGKYVM  269 (347)
T ss_dssp             ------------------TTSCEEEEEESC--C--------------CHHHHTTGGGGEEEEEEEEE
T ss_pred             ------------------cCCCceEEEECC--C--------------CHHHHHHHHHHHhcCCEEEE
Confidence                              114799988622  1              13467778889999998875

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=88.63  E-value=1.6  Score=42.87  Aligned_cols=108  Identities=14%  Similarity=0.179  Sum_probs=65.0

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEE-----EchHHHHHHHHHhhhcCC
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVS-----VGDAIEFLEKLARQIVGK  334 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~-----v~Dg~~~l~~~~~~~~~~  334 (478)
                      +.+|+|||+|  |++++..|.+. +.+|+.+ .+++.++..++. |+. ..+.....     ..|. +            
T Consensus        19 ~~kI~IiGaGa~G~~~a~~L~~~-G~~V~l~-~~~~~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~-~------------   82 (318)
T 3hwr_A           19 GMKVAIMGAGAVGCYYGGMLARA-GHEVILI-ARPQHVQAIEAT-GLRLETQSFDEQVKVSASSDP-S------------   82 (318)
T ss_dssp             -CEEEEESCSHHHHHHHHHHHHT-TCEEEEE-CCHHHHHHHHHH-CEEEECSSCEEEECCEEESCG-G------------
T ss_pred             CCcEEEECcCHHHHHHHHHHHHC-CCeEEEE-EcHhHHHHHHhC-CeEEEcCCCcEEEeeeeeCCH-H------------
Confidence            5799999999  55677666653 5799999 999888776653 211 01111111     1111 0            


Q ss_pred             CCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHH
Q 038592          335 NPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFY  414 (478)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~  414 (478)
                                           ....+|+||+-+            |.. ...+.++.++..|+++-+++...-+-...  
T Consensus        83 ---------------------~~~~~D~vilav------------k~~-~~~~~l~~l~~~l~~~~~iv~~~nGi~~~--  126 (318)
T 3hwr_A           83 ---------------------AVQGADLVLFCV------------KST-DTQSAALAMKPALAKSALVLSLQNGVENA--  126 (318)
T ss_dssp             ---------------------GGTTCSEEEECC------------CGG-GHHHHHHHHTTTSCTTCEEEEECSSSSHH--
T ss_pred             ---------------------HcCCCCEEEEEc------------ccc-cHHHHHHHHHHhcCCCCEEEEeCCCCCcH--
Confidence                                 123589999932            222 45788999999999887666443333221  


Q ss_pred             HHHHHHHHHhcC
Q 038592          415 DMLIQEFRDVFQ  426 (478)
Q Consensus       415 ~~v~~~l~~vF~  426 (478)
                          ..+.+.|+
T Consensus       127 ----~~l~~~~~  134 (318)
T 3hwr_A          127 ----DTLRSLLE  134 (318)
T ss_dssp             ----HHHHHHCC
T ss_pred             ----HHHHHHcC
Confidence                35667774

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=88.60  E-value=0.64  Score=48.68  Aligned_cols=57  Identities=28%  Similarity=0.401  Sum_probs=41.6

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHH--HHHH
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIE--FLEK  326 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~--~l~~  326 (478)
                      .-+|+|+|+|  |-.+++.|... +..|++||.|++.++.+.+.|+      +.+++|||.+  .|++
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~-~~~v~vId~d~~~~~~~~~~~~------~~~i~Gd~~~~~~L~~   63 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGE-NNDITIVDKDGDRLRELQDKYD------LRVVNGHASHPDVLHE   63 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCST-TEEEEEEESCHHHHHHHHHHSS------CEEEESCTTCHHHHHH
T ss_pred             cCEEEEECCCHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHhcC------cEEEEEcCCCHHHHHh
Confidence            3589999998  33344444321 5699999999999998877765      5789999976  4655

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=88.56  E-value=1.3  Score=44.19  Aligned_cols=45  Identities=18%  Similarity=0.209  Sum_probs=34.8

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL  307 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~  307 (478)
                      ..+|||+|.|+ |.++..+.+..+.+|.+++.+++-.+.+++-+|.
T Consensus       181 g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa  226 (357)
T 2cf5_A          181 GLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGA  226 (357)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCC
Confidence            46999999763 5555556655678999999999999888866774

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=88.45  E-value=2.8  Score=43.78  Aligned_cols=137  Identities=10%  Similarity=0.017  Sum_probs=69.7

Q ss_pred             CCeEEEEeCchhH--HHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGA--LVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~--L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..|+.+||+|.=+  ++..|.+. +.+|+++|+|++.++..++.-.....+       +.-+++++....   .+..-+.
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~-G~~V~~~D~~~~kv~~l~~g~~~~~ep-------gl~~~~~~~~~~---g~l~~tt   76 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDF-GHEVVCVDKDARKIELLHQNVMPIYEP-------GLDALVASNVKA---GRLSFTT   76 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCSTTHHHHTTTCCSSCCT-------THHHHHHHHHHT---TCEEEES
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHhcCCCCccCC-------CHHHHHHhhccc---CCEEEEC
Confidence            4799999999433  44444443 689999999999888766521100111       122233221110   0000000


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCC-CCCCCCCCCC-ChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHH
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDAR-NGTSAPPVEF-VRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLI  418 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~-~g~s~Pp~~f-~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~  418 (478)
                      .+           ...-..-|+||+-+..+... .+  . | .+ +-.+.++.+...|+++-+ +++..+-.+...+.+.
T Consensus        77 d~-----------~ea~~~aDvvii~Vptp~~~~~~--~-~-Dl~~v~~v~~~i~~~l~~g~i-VV~~STv~pgtt~~l~  140 (446)
T 4a7p_A           77 DL-----------AEGVKDADAVFIAVGTPSRRGDG--H-A-DLSYVFAAAREIAENLTKPSV-IVTKSTVPVGTGDEVE  140 (446)
T ss_dssp             CH-----------HHHHTTCSEEEECCCCCBCTTTC--C-B-CTHHHHHHHHHHHHSCCSCCE-EEECSCCCTTHHHHHH
T ss_pred             CH-----------HHHHhcCCEEEEEcCCCCccccC--C-c-cHHHHHHHHHHHHHhcCCCCE-EEEeCCCCchHHHHHH
Confidence            00           00012368999965332110 11  0 1 11 235667788888887655 4555444455556666


Q ss_pred             HHHHHhcC
Q 038592          419 QEFRDVFQ  426 (478)
Q Consensus       419 ~~l~~vF~  426 (478)
                      ..+.+..+
T Consensus       141 ~~l~e~~~  148 (446)
T 4a7p_A          141 RIIAEVAP  148 (446)
T ss_dssp             HHHHHHST
T ss_pred             HHHHHhCC
Confidence            66666543

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=88.43  E-value=1.4  Score=41.98  Aligned_cols=92  Identities=24%  Similarity=0.240  Sum_probs=58.2

Q ss_pred             eEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          265 KALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       265 ~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      +|.+||+|  |+.++..|.+. +.+|.+++.+++-++.++++ |...    + ...|..    +                
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~-g~~V~~~~~~~~~~~~~~~~-g~~~----~-~~~~~~----~----------------   54 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRR-GHYLIGVSRQQSTCEKAVER-QLVD----E-AGQDLS----L----------------   54 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHT-TSCS----E-EESCGG----G----------------
T ss_pred             EEEEEcCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHhC-CCCc----c-ccCCHH----H----------------
Confidence            68999998  45666666653 56999999999988877653 4321    1 112211    1                


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCc
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNR  411 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~  411 (478)
                                   . ...|+|++-+           || . ...++++.+...|+++.+ ++++.+-..
T Consensus        55 -------------~-~~~D~vi~av-----------~~-~-~~~~~~~~l~~~~~~~~~-vv~~~~~~~   95 (279)
T 2f1k_A           55 -------------L-QTAKIIFLCT-----------PI-Q-LILPTLEKLIPHLSPTAI-VTDVASVKT   95 (279)
T ss_dssp             -------------G-TTCSEEEECS-----------CH-H-HHHHHHHHHGGGSCTTCE-EEECCSCCH
T ss_pred             -------------h-CCCCEEEEEC-----------CH-H-HHHHHHHHHHhhCCCCCE-EEECCCCcH
Confidence                         2 4589999932           22 2 346778888888887654 567744333

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=88.38  E-value=0.66  Score=47.47  Aligned_cols=24  Identities=13%  Similarity=0.102  Sum_probs=21.1

Q ss_pred             HHHHHHHHccCcCcEEEEEeCCCC
Q 038592          387 DVLLAARLILSDFGIFVMNVIPPN  410 (478)
Q Consensus       387 efl~~~~~~L~~~Gilv~N~~~~~  410 (478)
                      .||+..++.|+|||.+++.+.++.
T Consensus       206 ~fL~~ra~eL~pGG~mvl~~~gr~  229 (374)
T 3b5i_A          206 EFLRARAAEVKRGGAMFLVCLGRT  229 (374)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEEECC
T ss_pred             HHHHHHHHHhCCCCEEEEEEecCC
Confidence            478899999999999999988773

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=88.21  E-value=1.6  Score=43.84  Aligned_cols=41  Identities=12%  Similarity=0.097  Sum_probs=30.4

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHH
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQ  303 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~  303 (478)
                      .++|.|||+|  |..++..+...++.+|.+++.++.-.+.+.+
T Consensus       163 g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~  205 (348)
T 2w2k_A          163 GHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKA  205 (348)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHH
T ss_pred             CCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhh
Confidence            5689999999  5567776652467899999998765555544

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=88.11  E-value=1.6  Score=44.25  Aligned_cols=43  Identities=19%  Similarity=0.271  Sum_probs=34.0

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCCEEEEEECChHHHHHHHHhcC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDFEVVGVEMDEVVLRVARQYFG  306 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg  306 (478)
                      +.+|+|+|+|. |..+..+.+.++.+|+++|.++...+.+++ +|
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~-~G  215 (384)
T 1l7d_A          172 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVES-LG  215 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHH-TT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cC
Confidence            68999999984 544555555678899999999998888877 55

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=87.98  E-value=3.6  Score=40.14  Aligned_cols=105  Identities=11%  Similarity=-0.031  Sum_probs=64.5

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+|.+||+|  |..++..|.+. +.+|++++.+++-++.+.+. |.       ....|..+.+++              
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~-G~~V~~~dr~~~~~~~~~~~-g~-------~~~~~~~e~~~~--------------   65 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQ-GKRVAIWNRSPGKAAALVAA-GA-------HLCESVKAALSA--------------   65 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSHHHHHHHHHH-TC-------EECSSHHHHHHH--------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHC-CC-------eecCCHHHHHhc--------------
Confidence            4689999999  55677766654 67899999999988876654 32       123454554432              


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHH--HHHHccCcCcEEEEEeCCCCchHHHHHH
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLL--AARLILSDFGIFVMNVIPPNRSFYDMLI  418 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~--~~~~~L~~~Gilv~N~~~~~~~~~~~v~  418 (478)
                                         .|+||+-+            |..-...+.+.  .+.. +.+ |.+++|+.+..+...+.+.
T Consensus        66 -------------------aDvVi~~v------------p~~~~~~~v~~~~~l~~-~~~-g~ivid~st~~~~~~~~l~  112 (306)
T 3l6d_A           66 -------------------SPATIFVL------------LDNHATHEVLGMPGVAR-ALA-HRTIVDYTTNAQDEGLALQ  112 (306)
T ss_dssp             -------------------SSEEEECC------------SSHHHHHHHHTSTTHHH-HTT-TCEEEECCCCCTTHHHHHH
T ss_pred             -------------------CCEEEEEe------------CCHHHHHHHhcccchhh-ccC-CCEEEECCCCCHHHHHHHH
Confidence                               58999833            21111233443  3333 344 5566788776666556666


Q ss_pred             HHHHH
Q 038592          419 QEFRD  423 (478)
Q Consensus       419 ~~l~~  423 (478)
                      +.+++
T Consensus       113 ~~~~~  117 (306)
T 3l6d_A          113 GLVNQ  117 (306)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66655

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=87.83  E-value=1.3  Score=38.61  Aligned_cols=52  Identities=23%  Similarity=0.267  Sum_probs=33.5

Q ss_pred             CCeEEEEeCch-h-HHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHH
Q 038592          263 RPKALCVGVGG-G-ALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAI  321 (478)
Q Consensus       263 ~~~VLvIGlGg-G-~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~  321 (478)
                      ..+|+|+|+|. | .++..|.. .+.+|+++|.+++.++.+++.+      ...++.+|..
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~-~g~~V~vid~~~~~~~~~~~~~------g~~~~~~d~~   72 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASS-SGHSVVVVDKNEYAFHRLNSEF------SGFTVVGDAA   72 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-TTCEEEEEESCGGGGGGSCTTC------CSEEEESCTT
T ss_pred             CCcEEEECCCHHHHHHHHHHHh-CCCeEEEEECCHHHHHHHHhcC------CCcEEEecCC
Confidence            57999999873 3 34455544 3679999999998765543211      2456666653

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=87.63  E-value=1.3  Score=43.22  Aligned_cols=104  Identities=10%  Similarity=0.032  Sum_probs=64.3

Q ss_pred             CeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          264 PKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       264 ~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      .+|.+||+|  |..++..|.+. +.+|+++|.+++.++.+.+. |      ++ ...|..+.                  
T Consensus        16 ~~I~vIG~G~mG~~~A~~l~~~-G~~V~~~dr~~~~~~~~~~~-g------~~-~~~~~~~~------------------   68 (296)
T 3qha_A           16 LKLGYIGLGNMGAPMATRMTEW-PGGVTVYDIRIEAMTPLAEA-G------AT-LADSVADV------------------   68 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHTTS-TTCEEEECSSTTTSHHHHHT-T------CE-ECSSHHHH------------------
T ss_pred             CeEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHC-C------CE-EcCCHHHH------------------
Confidence            589999999  45566666543 67999999999887776553 2      11 12232222                  


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHH
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEF  421 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l  421 (478)
                                     -. .|+||+-+            |..-...+.++.+...|+++- ++++..+......+.+.+.+
T Consensus        69 ---------------~~-aDvvi~~v------------p~~~~~~~v~~~l~~~l~~g~-ivv~~st~~~~~~~~~~~~~  119 (296)
T 3qha_A           69 ---------------AA-ADLIHITV------------LDDAQVREVVGELAGHAKPGT-VIAIHSTISDTTAVELARDL  119 (296)
T ss_dssp             ---------------TT-SSEEEECC------------SSHHHHHHHHHHHHTTCCTTC-EEEECSCCCHHHHHHHHHHH
T ss_pred             ---------------Hh-CCEEEEEC------------CChHHHHHHHHHHHHhcCCCC-EEEEeCCCCHHHHHHHHHHH
Confidence                           12 79999943            211123566778888888755 55677665555545555555


Q ss_pred             HH
Q 038592          422 RD  423 (478)
Q Consensus       422 ~~  423 (478)
                      .+
T Consensus       120 ~~  121 (296)
T 3qha_A          120 KA  121 (296)
T ss_dssp             GG
T ss_pred             HH
Confidence            43

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=87.30  E-value=10  Score=39.44  Aligned_cols=39  Identities=26%  Similarity=0.485  Sum_probs=30.8

Q ss_pred             CeEEEEeCc--hhHHHHHHHhhC-CCEEEEEECChHHHHHHH
Q 038592          264 PKALCVGVG--GGALVSFLRTQL-DFEVVGVEMDEVVLRVAR  302 (478)
Q Consensus       264 ~~VLvIGlG--gG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~  302 (478)
                      .+|.|||+|  |+.++..|.+.. +.+|+++|++++.++..+
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~   47 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWN   47 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHT
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHh
Confidence            589999999  555777676653 679999999999877654

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=87.21  E-value=3.9  Score=42.77  Aligned_cols=99  Identities=12%  Similarity=0.023  Sum_probs=62.6

Q ss_pred             CeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          264 PKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       264 ~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      .+|.+||+|  |+.++..|.+. +.+|.+++.+++.++...+.++   ++.+. ...|..++++.               
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~~~---~~gi~-~~~s~~e~v~~---------------   65 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVESR-GYTVAIYNRTTSKTEEVFKEHQ---DKNLV-FTKTLEEFVGS---------------   65 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSHHHHHHHHHHTT---TSCEE-ECSSHHHHHHT---------------
T ss_pred             CcEEEEeeHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHHHHhCc---CCCeE-EeCCHHHHHhh---------------
Confidence            489999999  55677766654 5689999999998877665443   12332 23344444421               


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPN  410 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~  410 (478)
                                     -.+.|+||+-+            |..-...++++.+...|+++- +++++.+..
T Consensus        66 ---------------l~~aDvVilav------------p~~~~v~~vl~~l~~~l~~g~-iiId~s~~~  106 (474)
T 2iz1_A           66 ---------------LEKPRRIMLMV------------QAGAATDATIKSLLPLLDIGD-ILIDGGNTH  106 (474)
T ss_dssp             ---------------BCSSCEEEECC------------CTTHHHHHHHHHHGGGCCTTC-EEEECSCCC
T ss_pred             ---------------ccCCCEEEEEc------------cCchHHHHHHHHHHhhCCCCC-EEEECCCCC
Confidence                           13479999933            221124567788888888765 455665443

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=86.97  E-value=1.1  Score=44.59  Aligned_cols=42  Identities=14%  Similarity=-0.003  Sum_probs=31.6

Q ss_pred             CCeEEEEeC--chhHHHHHHHhhCCCEEEEEECChHHHHHHHHh
Q 038592          263 RPKALCVGV--GGGALVSFLRTQLDFEVVGVEMDEVVLRVARQY  304 (478)
Q Consensus       263 ~~~VLvIGl--GgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~  304 (478)
                      ..+|||.|+  |.|..+..+.+..+.+|.+++.+++-++.++++
T Consensus       163 g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~  206 (354)
T 2j8z_A          163 GDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKL  206 (354)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc
Confidence            468999984  345555455555678999999999999998654

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=86.78  E-value=3.3  Score=43.07  Aligned_cols=39  Identities=21%  Similarity=0.249  Sum_probs=30.9

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHH
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQ  303 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~  303 (478)
                      ..+|.|||+|  |..++..|.+  +.+|+++|+|++.++..++
T Consensus        36 ~mkIaVIGlG~mG~~lA~~La~--G~~V~~~D~~~~~v~~l~~   76 (432)
T 3pid_A           36 FMKITISGTGYVGLSNGVLIAQ--NHEVVALDIVQAKVDMLNQ   76 (432)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT--TSEEEEECSCHHHHHHHHT
T ss_pred             CCEEEEECcCHHHHHHHHHHHc--CCeEEEEecCHHHhhHHhc
Confidence            4689999999  4445555554  7899999999999987765

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=86.45  E-value=4.4  Score=42.73  Aligned_cols=114  Identities=11%  Similarity=0.057  Sum_probs=69.8

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+|.+||+|  |+.++..|.+. +.+|.+.+.+++.++...+.-.  .+.++. ...|..++++.              
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~g~--~g~~i~-~~~s~~e~v~~--------------   65 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDH-GFVVCAFNRTVSKVDDFLANEA--KGTKVV-GAQSLKEMVSK--------------   65 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSTHHHHHHHHTTT--TTSSCE-ECSSHHHHHHT--------------
T ss_pred             CCEEEEEChhHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhccc--CCCcee-ccCCHHHHHhh--------------
Confidence            4589999999  55677767654 6799999999998887655311  011221 13454455432              


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHH
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQE  420 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~  420 (478)
                                      -..-|+||+=+            |..-...++++.+...|+++- ++++..+........+.+.
T Consensus        66 ----------------l~~aDvVil~V------------p~~~~v~~vl~~l~~~L~~g~-iIId~st~~~~~t~~~~~~  116 (484)
T 4gwg_A           66 ----------------LKKPRRIILLV------------KAGQAVDDFIEKLVPLLDTGD-IIIDGGNSEYRDTTRRCRD  116 (484)
T ss_dssp             ----------------BCSSCEEEECS------------CSSHHHHHHHHHHGGGCCTTC-EEEECSCCCHHHHHHHHHH
T ss_pred             ----------------ccCCCEEEEec------------CChHHHHHHHHHHHHhcCCCC-EEEEcCCCCchHHHHHHHH
Confidence                            12469999933            221134667888888898755 5567766654333444455


Q ss_pred             HHH
Q 038592          421 FRD  423 (478)
Q Consensus       421 l~~  423 (478)
                      +.+
T Consensus       117 l~~  119 (484)
T 4gwg_A          117 LKA  119 (484)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            554

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=86.31  E-value=5.1  Score=42.29  Aligned_cols=113  Identities=10%  Similarity=0.057  Sum_probs=68.5

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHH-hcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQ-YFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~-~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      ..+|.+||+|  |+.++..|.+. +.+|++++.+++.++...+ ..+   +..++ ...|..++++.             
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~-G~~V~v~dr~~~~~~~l~~~~~~---~~gi~-~~~s~~e~v~~-------------   71 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADH-GFTVCAYNRTQSKVDHFLANEAK---GKSII-GATSIEDFISK-------------   71 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSHHHHHHHHTTTT---TSSEE-CCSSHHHHHHT-------------
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHccccc---CCCeE-EeCCHHHHHhc-------------
Confidence            3689999999  55677777654 6789999999998887665 321   11222 12344444321             


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHH
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQ  419 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~  419 (478)
                                       -.+.|+||+=+            |..-...++++.+...|+++- +++++.+........+.+
T Consensus        72 -----------------l~~aDvVil~V------------p~~~~v~~vl~~l~~~l~~g~-iIId~s~~~~~~~~~l~~  121 (497)
T 2p4q_A           72 -----------------LKRPRKVMLLV------------KAGAPVDALINQIVPLLEKGD-IIIDGGNSHFPDSNRRYE  121 (497)
T ss_dssp             -----------------SCSSCEEEECC------------CSSHHHHHHHHHHGGGCCTTC-EEEECSCCCHHHHHHHHH
T ss_pred             -----------------CCCCCEEEEEc------------CChHHHHHHHHHHHHhCCCCC-EEEECCCCChhHHHHHHH
Confidence                             12469999943            221134677888888888754 555666554433333444


Q ss_pred             HHHH
Q 038592          420 EFRD  423 (478)
Q Consensus       420 ~l~~  423 (478)
                      .+.+
T Consensus       122 ~l~~  125 (497)
T 2p4q_A          122 ELKK  125 (497)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4544

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=86.28  E-value=5.6  Score=39.51  Aligned_cols=55  Identities=13%  Similarity=-0.021  Sum_probs=36.4

Q ss_pred             CCeEEEEeCch-hH--HHHHHHhhCCCEEE-EEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHH
Q 038592          263 RPKALCVGVGG-GA--LVSFLRTQLDFEVV-GVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFL  324 (478)
Q Consensus       263 ~~~VLvIGlGg-G~--L~~~L~~~~~~~V~-~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l  324 (478)
                      +.||.+||+|. |.  ....|.+..+++|+ ++|.|++-.+...+.++.      ... .|..+.+
T Consensus        27 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~------~~~-~~~~~ll   85 (350)
T 3rc1_A           27 PIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGG------EPV-EGYPALL   85 (350)
T ss_dssp             CEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCS------EEE-ESHHHHH
T ss_pred             ceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCC------CCc-CCHHHHh
Confidence            56999999994 32  45566665577876 569998877755555553      222 6666665

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=86.12  E-value=2.8  Score=40.81  Aligned_cols=32  Identities=25%  Similarity=0.562  Sum_probs=25.1

Q ss_pred             CeEEEEe-Cc--hhHHHHHHHhhCCCEEEEEECChH
Q 038592          264 PKALCVG-VG--GGALVSFLRTQLDFEVVGVEMDEV  296 (478)
Q Consensus       264 ~~VLvIG-lG--gG~L~~~L~~~~~~~V~~VEiDp~  296 (478)
                      .+|.||| +|  |++++..|.+. +.+|.+++.++.
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~-G~~V~~~~~~~~   56 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRAS-GYPISILDREDW   56 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTT-TCCEEEECTTCG
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhC-CCeEEEEECCcc
Confidence            5899999 99  67777777653 568999998875

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=86.03  E-value=1.4  Score=42.03  Aligned_cols=39  Identities=15%  Similarity=0.141  Sum_probs=30.0

Q ss_pred             CeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHh
Q 038592          264 PKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQY  304 (478)
Q Consensus       264 ~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~  304 (478)
                      .+|.+||+|  |..++..|.+  +.+|.+++.+++-.+...+.
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~--g~~V~~~~~~~~~~~~~~~~   42 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR--RFPTLVWNRTFEKALRHQEE   42 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT--TSCEEEECSSTHHHHHHHHH
T ss_pred             CeEEEEcccHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHC
Confidence            379999999  4556777765  77899999999877765543

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=85.90  E-value=3.1  Score=41.47  Aligned_cols=40  Identities=15%  Similarity=0.252  Sum_probs=29.5

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHh
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQY  304 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~  304 (478)
                      .++|.|||+|  |..++..+.. ++.+|.+++.++.- +.+.++
T Consensus       150 g~~vgIIG~G~iG~~iA~~l~~-~G~~V~~~d~~~~~-~~~~~~  191 (334)
T 2dbq_A          150 GKTIGIIGLGRIGQAIAKRAKG-FNMRILYYSRTRKE-EVEREL  191 (334)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSCCH-HHHHHH
T ss_pred             CCEEEEEccCHHHHHHHHHHHh-CCCEEEEECCCcch-hhHhhc
Confidence            4689999999  4456665553 57899999999876 555443

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=85.75  E-value=3  Score=41.78  Aligned_cols=94  Identities=10%  Similarity=0.077  Sum_probs=61.4

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+|||+|++  .|.++..+.+..+.+|.++ .+++-.+.|+++ |..  .-+.....|..+.+++.             
T Consensus       165 g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~-~~~~~~~~~~~l-Ga~--~vi~~~~~~~~~~v~~~-------------  227 (371)
T 3gqv_A          165 PVYVLVYGGSTATATVTMQMLRLSGYIPIAT-CSPHNFDLAKSR-GAE--EVFDYRAPNLAQTIRTY-------------  227 (371)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEE-ECGGGHHHHHHT-TCS--EEEETTSTTHHHHHHHH-------------
T ss_pred             CcEEEEECCCcHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHc-CCc--EEEECCCchHHHHHHHH-------------
Confidence            4689999984  5777777777788888888 488889998764 532  11111123555555543             


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHcc-CcCcEEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLIL-SDFGIFVM  404 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L-~~~Gilv~  404 (478)
                                     .+..+|++|--+  +              ..+.++.+.+.| +++|.++.
T Consensus       228 ---------------t~g~~d~v~d~~--g--------------~~~~~~~~~~~l~~~~G~iv~  261 (371)
T 3gqv_A          228 ---------------TKNNLRYALDCI--T--------------NVESTTFCFAAIGRAGGHYVS  261 (371)
T ss_dssp             ---------------TTTCCCEEEESS--C--------------SHHHHHHHHHHSCTTCEEEEE
T ss_pred             ---------------ccCCccEEEECC--C--------------chHHHHHHHHHhhcCCCEEEE
Confidence                           233499987511  1              145677888888 58998874

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=85.72  E-value=3.2  Score=40.07  Aligned_cols=43  Identities=16%  Similarity=0.214  Sum_probs=33.8

Q ss_pred             CCeEEEEeC-c-hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcC
Q 038592          263 RPKALCVGV-G-GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFG  306 (478)
Q Consensus       263 ~~~VLvIGl-G-gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg  306 (478)
                      ..+|||+|+ | .|.++..+.+..+.+|.+++.+++-.+.+++ +|
T Consensus       126 g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-~g  170 (302)
T 1iz0_A          126 GEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA-LG  170 (302)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH-TT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-cC
Confidence            469999997 3 4566666666678899999999999998876 45

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=85.33  E-value=2.7  Score=41.79  Aligned_cols=39  Identities=15%  Similarity=0.152  Sum_probs=27.6

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHH
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVAR  302 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~  302 (478)
                      .++|.|||+|  |..++..+.. ++.+|.+++.++.-.+.+.
T Consensus       155 g~~vgIIG~G~iG~~iA~~l~~-~G~~V~~~d~~~~~~~~~~  195 (330)
T 2gcg_A          155 QSTVGIIGLGRIGQAIARRLKP-FGVQRFLYTGRQPRPEEAA  195 (330)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGG-GTCCEEEEESSSCCHHHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHH-CCCEEEEECCCCcchhHHH
Confidence            4689999998  4456665553 4789999998876444443

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=85.13  E-value=1.7  Score=42.89  Aligned_cols=40  Identities=28%  Similarity=0.422  Sum_probs=34.8

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHh
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQY  304 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~  304 (478)
                      .++|.+||+|  |+.++..+. . +.+|+++|.+++.++.+++.
T Consensus        12 ~~~V~vIG~G~MG~~iA~~la-a-G~~V~v~d~~~~~~~~~~~~   53 (293)
T 1zej_A           12 HMKVFVIGAGLMGRGIAIAIA-S-KHEVVLQDVSEKALEAAREQ   53 (293)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-T-TSEEEEECSCHHHHHHHHHH
T ss_pred             CCeEEEEeeCHHHHHHHHHHH-c-CCEEEEEECCHHHHHHHHHH
Confidence            4799999999  667887777 4 78999999999999988887

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=85.12  E-value=8.3  Score=37.38  Aligned_cols=40  Identities=15%  Similarity=0.181  Sum_probs=28.3

Q ss_pred             CCeEEEEeCch-h-HHHHHHHhhCCCEEEEEECChHHHHHHHH
Q 038592          263 RPKALCVGVGG-G-ALVSFLRTQLDFEVVGVEMDEVVLRVARQ  303 (478)
Q Consensus       263 ~~~VLvIGlGg-G-~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~  303 (478)
                      .++|+|||+|. | .++..+. .++.+|.+++.++.-.+.+.+
T Consensus       157 g~~v~IiG~G~iG~~~a~~l~-~~G~~V~~~d~~~~~~~~~~~  198 (300)
T 2rir_A          157 GSQVAVLGLGRTGMTIARTFA-ALGANVKVGARSSAHLARITE  198 (300)
T ss_dssp             TSEEEEECCSHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHH
T ss_pred             CCEEEEEcccHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHH
Confidence            57999999984 3 2344443 457899999999876655544

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=85.12  E-value=4.3  Score=38.84  Aligned_cols=38  Identities=11%  Similarity=0.204  Sum_probs=29.2

Q ss_pred             eEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHH
Q 038592          265 KALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQ  303 (478)
Q Consensus       265 ~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~  303 (478)
                      +|.+||+|  |+.++..|.+. +.+|.+++.+++-++...+
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~-g~~V~~~~~~~~~~~~~~~   41 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKH-GYPLIIYDVFPDACKEFQD   41 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHT-TCCEEEECSSTHHHHHHHT
T ss_pred             eEEEEeccHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH
Confidence            68999999  45566666653 5689999999988776654

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=85.01  E-value=0.94  Score=43.00  Aligned_cols=42  Identities=21%  Similarity=0.191  Sum_probs=31.7

Q ss_pred             CeEEEEeCc--hhHHHHHHHhhCCCE-EEEEECChHHHHHHHHhcC
Q 038592          264 PKALCVGVG--GGALVSFLRTQLDFE-VVGVEMDEVVLRVARQYFG  306 (478)
Q Consensus       264 ~~VLvIGlG--gG~L~~~L~~~~~~~-V~~VEiDp~Vl~vA~~~Fg  306 (478)
                      .+|.+||+|  |..++..|.+. +.+ |.+++.+++-++.+.+.++
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~-g~~~v~~~~~~~~~~~~~~~~~g   55 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRK-GFRIVQVYSRTEESARELAQKVE   55 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHH-TCCEEEEECSSHHHHHHHHHHTT
T ss_pred             CeEEEEcCCHHHHHHHHHHHHC-CCeEEEEEeCCHHHHHHHHHHcC
Confidence            589999998  45566666654 555 8999999998877766655

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*

Probab=84.87  E-value=8  Score=36.25  Aligned_cols=44  Identities=20%  Similarity=0.175  Sum_probs=26.0

Q ss_pred             CCeEEEEeCchh----HHHHHHHhhC---CCEEEEEECChHHHHHHHHhcCCC
Q 038592          263 RPKALCVGVGGG----ALVSFLRTQL---DFEVVGVEMDEVVLRVARQYFGLE  308 (478)
Q Consensus       263 ~~~VLvIGlGgG----~L~~~L~~~~---~~~V~~VEiDp~Vl~vA~~~Fg~~  308 (478)
                      .+.|.+.+.-||    +++..|...+   +.+|..||.|+. -. +..+|+..
T Consensus         6 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~-~~-~~~~l~~~   56 (257)
T 1wcv_1            6 VRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQ-GN-ATSGLGVR   56 (257)
T ss_dssp             CCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTT-CH-HHHHTTCC
T ss_pred             CEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCC-cC-HHHHhCCC
Confidence            345556544333    2333333332   679999999997 34 44788764

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=84.77  E-value=3.6  Score=40.51  Aligned_cols=31  Identities=10%  Similarity=0.204  Sum_probs=24.7

Q ss_pred             CeEEEEeCc--hhHHHHHHHhhCC-CEEEEEECCh
Q 038592          264 PKALCVGVG--GGALVSFLRTQLD-FEVVGVEMDE  295 (478)
Q Consensus       264 ~~VLvIGlG--gG~L~~~L~~~~~-~~V~~VEiDp  295 (478)
                      .+|.+||+|  |..++..|.+. + .+|++++.++
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~-G~~~V~~~dr~~   58 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGR-NAARLAAYDLRF   58 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT-TCSEEEEECGGG
T ss_pred             CeEEEECccHHHHHHHHHHHHc-CCCeEEEEeCCC
Confidence            589999999  45566666654 6 7999999998

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=84.72  E-value=2  Score=42.89  Aligned_cols=41  Identities=20%  Similarity=0.150  Sum_probs=30.6

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHH-HHHHHHh
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVV-LRVARQY  304 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~V-l~vA~~~  304 (478)
                      ..+|.|||+|  |++++..|... +.+|.+++.++.- .+.|+++
T Consensus        16 ~~~I~IIG~G~mG~alA~~L~~~-G~~V~~~~~~~~~~~~~a~~~   59 (338)
T 1np3_A           16 GKKVAIIGYGSQGHAHACNLKDS-GVDVTVGLRSGSATVAKAEAH   59 (338)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHT-TCCEEEECCTTCHHHHHHHHT
T ss_pred             CCEEEEECchHHHHHHHHHHHHC-cCEEEEEECChHHHHHHHHHC
Confidence            3589999999  67788777654 5789999988754 6666553

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=84.65  E-value=2.3  Score=42.43  Aligned_cols=42  Identities=31%  Similarity=0.336  Sum_probs=30.9

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCCEEEEEECCh---HHHHHHHHh
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDFEVVGVEMDE---VVLRVARQY  304 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~~V~~VEiDp---~Vl~vA~~~  304 (478)
                      ..+|||+|+|+ |.++..+.+..+.+|.+++.++   +-.+.++++
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~  226 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEET  226 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHh
Confidence            46899999843 4444444545578999999998   778888764

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=84.55  E-value=4.7  Score=39.17  Aligned_cols=39  Identities=26%  Similarity=0.173  Sum_probs=29.2

Q ss_pred             eEEEEeCc--hhHHHHHHHhhCCCEEEEEEC--ChHHHHHHHHh
Q 038592          265 KALCVGVG--GGALVSFLRTQLDFEVVGVEM--DEVVLRVARQY  304 (478)
Q Consensus       265 ~VLvIGlG--gG~L~~~L~~~~~~~V~~VEi--Dp~Vl~vA~~~  304 (478)
                      +|.|||+|  |+.++..|.+. +.+|++++.  +++.++..++.
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~-g~~V~~~~r~~~~~~~~~~~~~   44 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDN-GNEVRIWGTEFDTEILKSISAG   44 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHH-CCEEEEECCGGGHHHHHHHHTT
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCeEEEEEccCCHHHHHHHHHh
Confidence            68999999  44566666554 569999999  98877766543

>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A

Probab=84.34  E-value=9.7  Score=31.79  Aligned_cols=72  Identities=15%  Similarity=0.117  Sum_probs=49.9

Q ss_pred             CEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEE
Q 038592          286 FEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMV  365 (478)
Q Consensus       286 ~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIiv  365 (478)
                      .+|..||=|+...+.-++.+....+...-....++.+.++.+                            ....+|+|++
T Consensus        21 ~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l----------------------------~~~~~dlii~   72 (150)
T 4e7p_A           21 MKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLL----------------------------EKESVDIAIL   72 (150)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHH----------------------------TTSCCSEEEE
T ss_pred             cEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHh----------------------------hccCCCEEEE
Confidence            589999999999998888775322212234567888777664                            3456999999


Q ss_pred             eCCCCCCCCCCCCCCCCCChHHHHHHHHHcc
Q 038592          366 DLDSGDARNGTSAPPVEFVRKDVLLAARLIL  396 (478)
Q Consensus       366 Dv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L  396 (478)
                      |+.-++.           -..++++.+++.-
T Consensus        73 D~~l~~~-----------~g~~~~~~l~~~~   92 (150)
T 4e7p_A           73 DVEMPVK-----------TGLEVLEWIRSEK   92 (150)
T ss_dssp             CSSCSSS-----------CHHHHHHHHHHTT
T ss_pred             eCCCCCC-----------cHHHHHHHHHHhC
Confidence            9754331           3467888888764

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=84.33  E-value=1  Score=43.33  Aligned_cols=39  Identities=10%  Similarity=0.192  Sum_probs=31.1

Q ss_pred             CeEEEEeC-c--hhHHHHHHHhhCCCEEEEEECChHHHHHHHH
Q 038592          264 PKALCVGV-G--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQ  303 (478)
Q Consensus       264 ~~VLvIGl-G--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~  303 (478)
                      .+|.+||+ |  |+.++..|.+. +.+|++++.+++-++.+.+
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~-g~~V~~~~r~~~~~~~~~~   53 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDS-AHHLAAIEIAPEGRDRLQG   53 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHS-SSEEEEECCSHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHh
Confidence            58999999 8  55677766654 5799999999988877766

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=84.32  E-value=13  Score=36.84  Aligned_cols=149  Identities=17%  Similarity=0.138  Sum_probs=80.3

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      .++|.|||+|  |..+++.+.. ++.+|.+++.++.. +.+.++ |      ++.  .|.-+.+++              
T Consensus       146 g~~vgIIG~G~iG~~vA~~l~~-~G~~V~~~d~~~~~-~~~~~~-g------~~~--~~l~e~l~~--------------  200 (333)
T 2d0i_A          146 GKKVGILGMGAIGKAIARRLIP-FGVKLYYWSRHRKV-NVEKEL-K------ARY--MDIDELLEK--------------  200 (333)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGG-GTCEEEEECSSCCH-HHHHHH-T------EEE--CCHHHHHHH--------------
T ss_pred             cCEEEEEccCHHHHHHHHHHHH-CCCEEEEECCCcch-hhhhhc-C------cee--cCHHHHHhh--------------
Confidence            5689999999  4556665553 47899999999876 555443 3      222  244344432              


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHH
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQE  420 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~  420 (478)
                                         .|+|++-+.....+       .+++..+.+    ..|+++  +++|+..-..--.+.+.+.
T Consensus       201 -------------------aDiVil~vp~~~~t-------~~~i~~~~~----~~mk~g--ilin~srg~~vd~~aL~~a  248 (333)
T 2d0i_A          201 -------------------SDIVILALPLTRDT-------YHIINEERV----KKLEGK--YLVNIGRGALVDEKAVTEA  248 (333)
T ss_dssp             -------------------CSEEEECCCCCTTT-------TTSBCHHHH----HHTBTC--EEEECSCGGGBCHHHHHHH
T ss_pred             -------------------CCEEEEcCCCChHH-------HHHhCHHHH----hhCCCC--EEEECCCCcccCHHHHHHH
Confidence                               69999955332211       234554443    456776  6789874322212345666


Q ss_pred             HHHhcCccEEEee-----------cccc-eEEEEEEcCCCCCCcc---hhhhhhhHHHHHHhccc
Q 038592          421 FRDVFQELYEIDV-----------GNEE-NFVLIATGLSIVSSGS---DCENAFGKKLRLLISGE  470 (478)
Q Consensus       421 l~~vF~~v~~~~v-----------~~~~-N~Vl~a~~~~~~~~~~---~~~~~~~~~l~~~i~~~  470 (478)
                      |++-+-....+++           -+.. |  ++.|+..-..+..   .....+..++++.+.|.
T Consensus       249 L~~~~i~gaglDv~~~EP~~~~~L~~~~~n--viltPh~~~~t~~~~~~~~~~~~~n~~~~~~g~  311 (333)
T 2d0i_A          249 IKQGKLKGYATDVFEKEPVREHELFKYEWE--TVLTPHYAGLALEAQEDVGFRAVENLLKVLRGE  311 (333)
T ss_dssp             HHTTCBCEEEESCCSSSSCSCCGGGGCTTT--EEECCSCTTCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHcCCceEEEecCCCCCCCCCchHHcCCCC--EEEcCccCCCcHHHHHHHHHHHHHHHHHHHcCC
Confidence            6654322222322           1223 5  3444433222222   23345667888887774

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=84.00  E-value=5.5  Score=39.20  Aligned_cols=39  Identities=13%  Similarity=0.147  Sum_probs=29.3

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHH
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQ  303 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~  303 (478)
                      .++|.|||+|  |+.+++.+. .++.+|.+++.++.- +.+.+
T Consensus       142 g~~vgIiG~G~IG~~~A~~l~-~~G~~V~~~d~~~~~-~~~~~  182 (307)
T 1wwk_A          142 GKTIGIIGFGRIGYQVAKIAN-ALGMNILLYDPYPNE-ERAKE  182 (307)
T ss_dssp             TCEEEEECCSHHHHHHHHHHH-HTTCEEEEECSSCCH-HHHHH
T ss_pred             CceEEEEccCHHHHHHHHHHH-HCCCEEEEECCCCCh-hhHhh
Confidence            5689999999  556776665 368999999998875 44443

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=83.97  E-value=10  Score=36.64  Aligned_cols=40  Identities=15%  Similarity=0.170  Sum_probs=28.4

Q ss_pred             CCeEEEEeCch-hH-HHHHHHhhCCCEEEEEECChHHHHHHHH
Q 038592          263 RPKALCVGVGG-GA-LVSFLRTQLDFEVVGVEMDEVVLRVARQ  303 (478)
Q Consensus       263 ~~~VLvIGlGg-G~-L~~~L~~~~~~~V~~VEiDp~Vl~vA~~  303 (478)
                      .++|+|||+|. |. ++..++ .++.+|.+++.++.-.+.+++
T Consensus       155 g~~v~IiG~G~iG~~~a~~l~-~~G~~V~~~dr~~~~~~~~~~  196 (293)
T 3d4o_A          155 GANVAVLGLGRVGMSVARKFA-ALGAKVKVGARESDLLARIAE  196 (293)
T ss_dssp             TCEEEEECCSHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHH
T ss_pred             CCEEEEEeeCHHHHHHHHHHH-hCCCEEEEEECCHHHHHHHHH
Confidence            57999999983 33 444343 457899999999876655543

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=83.92  E-value=7.8  Score=37.94  Aligned_cols=45  Identities=20%  Similarity=0.285  Sum_probs=30.8

Q ss_pred             CCeEEEEeCch--hHHHHHHH-hhCCCEEE-EEECChHHHHHHHHhcCC
Q 038592          263 RPKALCVGVGG--GALVSFLR-TQLDFEVV-GVEMDEVVLRVARQYFGL  307 (478)
Q Consensus       263 ~~~VLvIGlGg--G~L~~~L~-~~~~~~V~-~VEiDp~Vl~vA~~~Fg~  307 (478)
                      +.+|.+||+|.  ......+. +..+.+++ ++|.+++-.+.+.+.+|.
T Consensus         8 ~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~   56 (346)
T 3cea_A            8 PLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGV   56 (346)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCC
T ss_pred             cceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCC
Confidence            57999999983  33455565 44567765 569999988655555553

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=83.81  E-value=4.1  Score=40.15  Aligned_cols=39  Identities=21%  Similarity=0.256  Sum_probs=28.8

Q ss_pred             CeEEEEeCc--hhHHHHHHHhhCC-------CEEEEEECChH-----HHHHHHH
Q 038592          264 PKALCVGVG--GGALVSFLRTQLD-------FEVVGVEMDEV-----VLRVARQ  303 (478)
Q Consensus       264 ~~VLvIGlG--gG~L~~~L~~~~~-------~~V~~VEiDp~-----Vl~vA~~  303 (478)
                      .+|.|||+|  |++++..|.+. +       .+|++++.+++     ..+..++
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~~-g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~   61 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGGN-AAQLAQFDPRVTMWVFEEDIGGKKLTEIINT   61 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHH-HHHCTTEEEEEEEECCCCBSSSSBHHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhc-CCcccCCCCeEEEEEcChhhhhhHHHHHHHh
Confidence            489999999  55677666654 3       68999999987     5555443

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=83.60  E-value=4.2  Score=39.82  Aligned_cols=31  Identities=23%  Similarity=0.294  Sum_probs=25.0

Q ss_pred             CeEEEEeCc--hhHHHHHHHhhCCCEEEEEECCh
Q 038592          264 PKALCVGVG--GGALVSFLRTQLDFEVVGVEMDE  295 (478)
Q Consensus       264 ~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp  295 (478)
                      .+|+|||+|  |++++..|.+. +.+|+.++-++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~-g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKT-GHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHT-TCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCh
Confidence            589999999  56677777654 57999999988

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=83.49  E-value=1.1  Score=43.77  Aligned_cols=41  Identities=22%  Similarity=0.350  Sum_probs=34.3

Q ss_pred             eEEEEeC--chhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcC
Q 038592          265 KALCVGV--GGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFG  306 (478)
Q Consensus       265 ~VLvIGl--GgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg  306 (478)
                      +|||+|+  |.|.++..+.+..+.+|.+++.+++-.+.+++ +|
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~-lG  191 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKS-LG  191 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHH-HT
T ss_pred             eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-cC
Confidence            4999997  35777777877788899999999999999987 45

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=83.37  E-value=1.5  Score=44.40  Aligned_cols=40  Identities=18%  Similarity=0.071  Sum_probs=28.5

Q ss_pred             CeEEEEeCc--hhHHHHHHHhhCCCEEEEEE---CChHHHHHHHH
Q 038592          264 PKALCVGVG--GGALVSFLRTQLDFEVVGVE---MDEVVLRVARQ  303 (478)
Q Consensus       264 ~~VLvIGlG--gG~L~~~L~~~~~~~V~~VE---iDp~Vl~vA~~  303 (478)
                      .+|.|||+|  |++++..|.+..+.+|++++   .+++.++.+.+
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~   47 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALG   47 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHT
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHh
Confidence            389999999  45566666442356999999   88887776433

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=83.22  E-value=1.3  Score=44.10  Aligned_cols=39  Identities=33%  Similarity=0.390  Sum_probs=28.8

Q ss_pred             eEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHh
Q 038592          265 KALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQY  304 (478)
Q Consensus       265 ~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~  304 (478)
                      +|.|||+|  |++++..|.+. +.+|++++.+++-++..++.
T Consensus        17 kI~iIG~G~mG~~la~~L~~~-G~~V~~~~r~~~~~~~l~~~   57 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKK-CREVCVWHMNEEEVRLVNEK   57 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTT-EEEEEEECSCHHHHHHHHHH
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHc
Confidence            89999999  44566555432 46899999999887766553

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=83.07  E-value=5.8  Score=37.89  Aligned_cols=40  Identities=20%  Similarity=0.209  Sum_probs=30.5

Q ss_pred             CeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHh
Q 038592          264 PKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQY  304 (478)
Q Consensus       264 ~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~  304 (478)
                      .+|+|||+|  |+.++..|.+. +.+|++++.+++.++..++.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~-g~~V~~~~r~~~~~~~~~~~   45 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQG-GNDVTLIDQWPAHIEAIRKN   45 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhC-CCcEEEEECCHHHHHHHHhC
Confidence            589999998  44566666543 57999999999888776654

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=82.93  E-value=5.7  Score=40.65  Aligned_cols=44  Identities=18%  Similarity=0.043  Sum_probs=34.9

Q ss_pred             CCeEEEEeC-c-hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC
Q 038592          263 RPKALCVGV-G-GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL  307 (478)
Q Consensus       263 ~~~VLvIGl-G-gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~  307 (478)
                      ..+|||.|+ | .|.++..+.+..+.+|.++..+++-++.+++ +|.
T Consensus       221 g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~-lGa  266 (447)
T 4a0s_A          221 GDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRA-LGC  266 (447)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-TTC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-cCC
Confidence            568999996 3 4666666777778899999999999999976 453

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=82.52  E-value=5.9  Score=38.41  Aligned_cols=40  Identities=23%  Similarity=0.150  Sum_probs=29.9

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHH
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQ  303 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~  303 (478)
                      ..+|.+||+|  |..++..|.+. +.+|.+++.+++-++...+
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~-g~~V~~~~~~~~~~~~~~~   71 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKM-GHTVTVWNRTAEKCDLFIQ   71 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHT-TCCEEEECSSGGGGHHHHH
T ss_pred             CCeEEEEcccHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHH
Confidence            3689999999  44566666553 5689999999987776555

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=82.40  E-value=11  Score=36.96  Aligned_cols=108  Identities=14%  Similarity=0.133  Sum_probs=64.2

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhC---CCEEEEEECChH--HHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCC
Q 038592          263 RPKALCVGVG--GGALVSFLRTQL---DFEVVGVEMDEV--VLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKN  335 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~---~~~V~~VEiDp~--Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~  335 (478)
                      ..+|.+||+|  |++++..|.+.-   ..+|++++.+++  -++..+++ |      +++ ..|..+.++          
T Consensus        22 ~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~-G------~~~-~~~~~e~~~----------   83 (322)
T 2izz_A           22 SMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKM-G------VKL-TPHNKETVQ----------   83 (322)
T ss_dssp             CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHH-T------CEE-ESCHHHHHH----------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHc-C------CEE-eCChHHHhc----------
Confidence            3589999999  667777776542   158999999985  55544443 3      232 234433332          


Q ss_pred             CCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHH
Q 038592          336 PDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYD  415 (478)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~  415 (478)
                                             ..|+||+-+           ||.  ...+.+..+...|+++.+++ ++.+.-.  ..
T Consensus        84 -----------------------~aDvVilav-----------~~~--~~~~vl~~l~~~l~~~~ivv-s~s~gi~--~~  124 (322)
T 2izz_A           84 -----------------------HSDVLFLAV-----------KPH--IIPFILDEIGADIEDRHIVV-SCAAGVT--IS  124 (322)
T ss_dssp             -----------------------HCSEEEECS-----------CGG--GHHHHHHHHGGGCCTTCEEE-ECCTTCC--HH
T ss_pred             -----------------------cCCEEEEEe-----------CHH--HHHHHHHHHHhhcCCCCEEE-EeCCCCC--HH
Confidence                                   279999933           222  44678888888888766544 4433211  12


Q ss_pred             HHHHHHHHhcCc
Q 038592          416 MLIQEFRDVFQE  427 (478)
Q Consensus       416 ~v~~~l~~vF~~  427 (478)
                      .+-+.+.+.|+.
T Consensus       125 ~l~~~l~~~~~~  136 (322)
T 2izz_A          125 SIEKKLSAFRPA  136 (322)
T ss_dssp             HHHHHHHTTSSC
T ss_pred             HHHHHHhhcCCC
Confidence            334445555654

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=82.18  E-value=3.3  Score=45.86  Aligned_cols=40  Identities=23%  Similarity=0.334  Sum_probs=31.5

Q ss_pred             CeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHh
Q 038592          264 PKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQY  304 (478)
Q Consensus       264 ~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~  304 (478)
                      .+|.|||+|  |+.++..+.+. +.+|+++|++++.++.++++
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~a-G~~V~l~D~~~~~~~~~~~~  354 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILS-NYPVILKEVNEKFLEAGIGR  354 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTT-TCCEEEECSSHHHHHHHHHH
T ss_pred             cEEEEEcCCHhhHHHHHHHHhC-CCEEEEEECCHHHHHHHHHH
Confidence            579999999  45566666543 67999999999998877654

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=82.01  E-value=1.2  Score=43.08  Aligned_cols=40  Identities=25%  Similarity=0.307  Sum_probs=29.0

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhC----C-CEEEEEECChHHHHHHHH
Q 038592          263 RPKALCVGVG--GGALVSFLRTQL----D-FEVVGVEMDEVVLRVARQ  303 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~----~-~~V~~VEiDp~Vl~vA~~  303 (478)
                      +.+|++||+|  |+.++..|.+..    + .+|++++. ++.++..++
T Consensus         8 ~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~   54 (317)
T 2qyt_A            8 PIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRA   54 (317)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHh
Confidence            4589999999  566777776642    4 68999998 665555544

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=81.86  E-value=6.6  Score=41.13  Aligned_cols=33  Identities=21%  Similarity=0.206  Sum_probs=27.2

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChH
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEV  296 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~  296 (478)
                      ..+|.|||+|  |++++..+.+. +.+|+++|++++
T Consensus        54 i~kVaVIGaG~MG~~IA~~la~a-G~~V~l~D~~~e   88 (460)
T 3k6j_A           54 VNSVAIIGGGTMGKAMAICFGLA-GIETFLVVRNEQ   88 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCeEEEEECcHH
Confidence            3689999999  56677766654 789999999998

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=81.80  E-value=7  Score=40.78  Aligned_cols=40  Identities=18%  Similarity=0.217  Sum_probs=29.7

Q ss_pred             CCeEEEEeCchhH--HHHHHHhhCCCEEEEEECChHHHHHHHH
Q 038592          263 RPKALCVGVGGGA--LVSFLRTQLDFEVVGVEMDEVVLRVARQ  303 (478)
Q Consensus       263 ~~~VLvIGlGgG~--L~~~L~~~~~~~V~~VEiDp~Vl~vA~~  303 (478)
                      ..+|.|||+|-=+  ++..+.+ .+.+|+++|+|++.++.-++
T Consensus        21 m~~IaViGlGYVGLp~A~~~A~-~G~~V~g~Did~~kV~~ln~   62 (444)
T 3vtf_A           21 MASLSVLGLGYVGVVHAVGFAL-LGHRVVGYDVNPSIVERLRA   62 (444)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-HTCEEEEECSCHHHHHHHHT
T ss_pred             CCEEEEEccCHHHHHHHHHHHh-CCCcEEEEECCHHHHHHHHC
Confidence            5799999999433  3433433 26899999999999887654

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=81.78  E-value=3.7  Score=40.98  Aligned_cols=55  Identities=16%  Similarity=0.241  Sum_probs=42.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhh-CCCE-E-EEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHH
Q 038592          263 RPKALCVGVGGGALVSFLRTQ-LDFE-V-VGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEF  323 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~-~~~~-V-~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~  323 (478)
                      +.+++.+-+|.|++..-+.+. ++.+ | .++|+|+...+..+..|+-.      ++.+|..++
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~------~~~~DI~~~   67 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE------VQVKNLDSI   67 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC------CBCCCTTTC
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC------cccCChhhc
Confidence            568999999999999888775 2344 5 69999999999999988632      456676655

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=81.60  E-value=5  Score=32.12  Aligned_cols=51  Identities=25%  Similarity=0.307  Sum_probs=33.2

Q ss_pred             CCeEEEEeCch-h-HHHHHHHhhCC-CEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHH
Q 038592          263 RPKALCVGVGG-G-ALVSFLRTQLD-FEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAI  321 (478)
Q Consensus       263 ~~~VLvIGlGg-G-~L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~  321 (478)
                      ..+|+|+|+|. | .++..|.+. + .+|.+++.++.-++....       ..+.++..|..
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~-g~~~v~~~~r~~~~~~~~~~-------~~~~~~~~d~~   58 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTS-SNYSVTVADHDLAALAVLNR-------MGVATKQVDAK   58 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHC-SSEEEEEEESCHHHHHHHHT-------TTCEEEECCTT
T ss_pred             cCeEEEECCCHHHHHHHHHHHhC-CCceEEEEeCCHHHHHHHHh-------CCCcEEEecCC
Confidence            35899999952 2 234444443 5 799999999988776651       23556666554

>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}

Probab=81.48  E-value=2.9  Score=36.03  Aligned_cols=93  Identities=16%  Similarity=0.078  Sum_probs=51.6

Q ss_pred             chhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCc
Q 038592          272 GGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNF  349 (478)
Q Consensus       272 GgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  349 (478)
                      |.++...+..+..  ..+|..||=|+...+.-++.+.-..+..+-....|+.+.++.+..                    
T Consensus        10 ~~~~~~~~~~~M~~~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~--------------------   69 (164)
T 3t8y_A           10 HSSGLVPRGSHMTDRVIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIE--------------------   69 (164)
T ss_dssp             --------------CCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH--------------------
T ss_pred             ccCCcccCccccccCccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhcc--------------------
Confidence            4455555665553  369999999999999888877532111122247788887766432                    


Q ss_pred             cCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          350 LDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       350 ~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                              ..+|+||+|+.-++.           -..++++.+++.-. --++++
T Consensus        70 --------~~~dlvilD~~l~~~-----------~g~~l~~~lr~~~~-~~ii~~  104 (164)
T 3t8y_A           70 --------LKPDVITMDIEMPNL-----------NGIEALKLIMKKAP-TRVIMV  104 (164)
T ss_dssp             --------HCCSEEEECSSCSSS-----------CHHHHHHHHHHHSC-CEEEEE
T ss_pred             --------CCCCEEEEeCCCCCC-----------CHHHHHHHHHhcCC-ceEEEE
Confidence                    359999999754331           34677887776543 334443

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=81.05  E-value=17  Score=37.93  Aligned_cols=99  Identities=11%  Similarity=0.046  Sum_probs=61.2

Q ss_pred             CeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHH-hcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          264 PKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQ-YFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       264 ~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~-~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      .+|.|||+|  |+.++..|.+. +.+|.+++.+++.++...+ ...   +..+. ...|..+.++.              
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~-G~~V~v~dr~~~~~~~l~~~~~~---g~gi~-~~~~~~e~v~~--------------   63 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDH-GFVVCAFNRTVSKVDDFLANEAK---GTKVL-GAHSLEEMVSK--------------   63 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSTHHHHHHHHTTTT---TSSCE-ECSSHHHHHHH--------------
T ss_pred             CeEEEEChHHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHhcccc---CCCeE-EeCCHHHHHhh--------------
Confidence            479999999  55677766654 5689999999988876655 210   12232 23344444432              


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCC
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPN  410 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~  410 (478)
                                      -...|+||+-+            |..-...++++.+...|+++- +++++.+..
T Consensus        64 ----------------l~~aDvVilaV------------p~~~~v~~vl~~l~~~l~~g~-iII~~s~~~  104 (482)
T 2pgd_A           64 ----------------LKKPRRIILLV------------KAGQAVDNFIEKLVPLLDIGD-IIIDGGNSE  104 (482)
T ss_dssp             ----------------BCSSCEEEECS------------CTTHHHHHHHHHHHHHCCTTC-EEEECSCCC
T ss_pred             ----------------ccCCCEEEEeC------------CChHHHHHHHHHHHhhcCCCC-EEEECCCCC
Confidence                            12479999933            221134667888888898765 455665443

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=80.98  E-value=8  Score=39.80  Aligned_cols=44  Identities=16%  Similarity=0.139  Sum_probs=35.4

Q ss_pred             CCeEEEEeC-c-hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC
Q 038592          263 RPKALCVGV-G-GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL  307 (478)
Q Consensus       263 ~~~VLvIGl-G-gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~  307 (478)
                      ..+|||+|+ | .|.++..+.+..+.+|.++..+++-++.|+++ |.
T Consensus       229 g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~l-Ga  274 (456)
T 3krt_A          229 GDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAM-GA  274 (456)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-TC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHhh-CC
Confidence            468999997 3 46677777777789999999999999999774 53

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=80.80  E-value=8.6  Score=38.00  Aligned_cols=34  Identities=18%  Similarity=0.205  Sum_probs=26.9

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEEC-ChHH
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEM-DEVV  297 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEi-Dp~V  297 (478)
                      .++|.|||+|  |+.+++.+. .++.+|.+++. ++.-
T Consensus       146 g~~vgIIG~G~IG~~~A~~l~-~~G~~V~~~d~~~~~~  182 (320)
T 1gdh_A          146 NKTLGIYGFGSIGQALAKRAQ-GFDMDIDYFDTHRASS  182 (320)
T ss_dssp             TCEEEEECCSHHHHHHHHHHH-TTTCEEEEECSSCCCH
T ss_pred             CCEEEEECcCHHHHHHHHHHH-HCCCEEEEECCCCcCh
Confidence            5689999999  566777665 45789999999 7765

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=80.76  E-value=7.4  Score=38.38  Aligned_cols=105  Identities=13%  Similarity=0.183  Sum_probs=61.9

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      .++|.|||+|  |+.+++.+.. ++.+|.+++.++.-.. +. .+|.      +.  .+..+.+++              
T Consensus       142 g~~vgIIG~G~IG~~~A~~l~~-~G~~V~~~d~~~~~~~-~~-~~g~------~~--~~l~ell~~--------------  196 (313)
T 2ekl_A          142 GKTIGIVGFGRIGTKVGIIANA-MGMKVLAYDILDIREK-AE-KINA------KA--VSLEELLKN--------------  196 (313)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHH-TTCEEEEECSSCCHHH-HH-HTTC------EE--CCHHHHHHH--------------
T ss_pred             CCEEEEEeeCHHHHHHHHHHHH-CCCEEEEECCCcchhH-HH-hcCc------ee--cCHHHHHhh--------------
Confidence            5789999999  5567766653 5889999999887543 33 3342      21  244444432              


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHH
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQE  420 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~  420 (478)
                                         -|+|++-+.....+       .++++.+.+    ..|+++ .+++|+..-..--.+.+.+.
T Consensus       197 -------------------aDvVvl~~P~~~~t-------~~li~~~~l----~~mk~g-a~lIn~arg~~vd~~aL~~a  245 (313)
T 2ekl_A          197 -------------------SDVISLHVTVSKDA-------KPIIDYPQF----ELMKDN-VIIVNTSRAVAVNGKALLDY  245 (313)
T ss_dssp             -------------------CSEEEECCCCCTTS-------CCSBCHHHH----HHSCTT-EEEEESSCGGGBCHHHHHHH
T ss_pred             -------------------CCEEEEeccCChHH-------HHhhCHHHH----hcCCCC-CEEEECCCCcccCHHHHHHH
Confidence                               69999955432221       234555444    457775 56678865422223445666


Q ss_pred             HHH
Q 038592          421 FRD  423 (478)
Q Consensus       421 l~~  423 (478)
                      |++
T Consensus       246 L~~  248 (313)
T 2ekl_A          246 IKK  248 (313)
T ss_dssp             HHT
T ss_pred             HHc
Confidence            664

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=80.43  E-value=7.9  Score=38.64  Aligned_cols=128  Identities=15%  Similarity=0.101  Sum_probs=77.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhh-CCC-EEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQ-LDF-EVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~-~~~-~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      +.+++.+-+|.|++..-+.+. ++. .|.++|+|+...+.-+..|+-     ..++.+|..++..+..            
T Consensus         3 ~~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~-----~~~~~~DI~~~~~~~~------------   65 (333)
T 4h0n_A            3 SHKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE-----TNLLNRNIQQLTPQVI------------   65 (333)
T ss_dssp             CEEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT-----SCEECCCGGGCCHHHH------------
T ss_pred             CCEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC-----CceeccccccCCHHHh------------
Confidence            458999999999988888765 233 578999999999999998862     3466788776643211            


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCC-----CCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC-CchHH
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDAR-----NGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP-NRSFY  414 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~-----~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~-~~~~~  414 (478)
                                     ....+|+|+......+-+     .+...+ ..-+-.++++.++..-+|.=+++=||..- +....
T Consensus        66 ---------------~~~~~D~l~ggpPCQ~fS~ag~~~~~~d~-r~~L~~~~~r~i~~~~~P~~~vlENV~gl~~~~~~  129 (333)
T 4h0n_A           66 ---------------KKWNVDTILMSPPCQPFTRNGKYLDDNDP-RTNSFLYLIGILDQLDNVDYILMENVKGFENSTVR  129 (333)
T ss_dssp             ---------------HHTTCCEEEECCCCCCSEETTEECCTTCT-TSCCHHHHHHHGGGCTTCCEEEEEECTTGGGSHHH
T ss_pred             ---------------ccCCCCEEEecCCCcchhhhhhccCCcCc-ccccHHHHHHHHHHhcCCCEEEEecchhhhhhhHH
Confidence                           112588888754332211     111111 11223456655543323866666699764 33445


Q ss_pred             HHHHHHHHH
Q 038592          415 DMLIQEFRD  423 (478)
Q Consensus       415 ~~v~~~l~~  423 (478)
                      +.+++.|.+
T Consensus       130 ~~i~~~l~~  138 (333)
T 4h0n_A          130 NLFIDKLKE  138 (333)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            566666654

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=80.21  E-value=9.9  Score=37.09  Aligned_cols=54  Identities=11%  Similarity=0.041  Sum_probs=37.5

Q ss_pred             CCeEEEEeCch--hHHHHHHHhhCCCEEE-EEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHH
Q 038592          263 RPKALCVGVGG--GALVSFLRTQLDFEVV-GVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFL  324 (478)
Q Consensus       263 ~~~VLvIGlGg--G~L~~~L~~~~~~~V~-~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l  324 (478)
                      +.+|.+||+|.  ......+.+..+.+++ ++|.+++-.+...+.++.      .  ..|..+.+
T Consensus         3 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~------~--~~~~~~~l   59 (331)
T 4hkt_A            3 TVRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGC------E--VRTIDAIE   59 (331)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTC------E--ECCHHHHH
T ss_pred             ceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCC------C--cCCHHHHh
Confidence            35899999984  3455566666677877 589999987766565553      2  56766665

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=80.15  E-value=4.9  Score=39.40  Aligned_cols=42  Identities=10%  Similarity=0.158  Sum_probs=31.3

Q ss_pred             CCCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHh
Q 038592          262 FRPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQY  304 (478)
Q Consensus       262 ~~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~  304 (478)
                      ..++|-+||+|  |..++.-|.+. +.+|++.+.+++-.+...+.
T Consensus         2 ~M~kIgfIGlG~MG~~mA~~L~~~-G~~v~v~dr~~~~~~~l~~~   45 (300)
T 3obb_A            2 HMKQIAFIGLGHMGAPMATNLLKA-GYLLNVFDLVQSAVDGLVAA   45 (300)
T ss_dssp             -CCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSSHHHHHHHHHT
T ss_pred             CcCEEEEeeehHHHHHHHHHHHhC-CCeEEEEcCCHHHHHHHHHc
Confidence            36799999999  34455555543 67999999999988876553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	478
d1mjfa_	276	c.66.1.17 (A:) Putative spermidine synthetase PF01	8e-05
d1iy9a_	274	c.66.1.17 (A:) Spermidine synthase {Bacillus subti	3e-04

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 276

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 42.1 bits (98), Expect = 8e-05
 Identities = 32/177 (18%), Positives = 59/177 (33%), Gaps = 48/177 (27%)

Query: 265 KALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEF----------LQ 314
           + L +G G G  V  +      EV+ VE+DE V+ V++    +++G             +
Sbjct: 75  RVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAK 134

Query: 315 VSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARN 374
           +++GD  EF++                               +  FDVI+ D        
Sbjct: 135 LTIGDGFEFIKN------------------------------NRGFDVIIADSTDPV--- 161

Query: 375 GTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP--NRSFYDMLIQEFRDVFQELY 429
               P      ++        L++ GI+V                 +E + VF  +Y
Sbjct: 162 ---GPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVY 215

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} Length = 274

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

 Score = 40.1 bits (93), Expect = 3e-04
 Identities = 32/170 (18%), Positives = 55/170 (32%), Gaps = 42/170 (24%)

Query: 265 KALCVGVGGGALVSFLRTQLDFE-VVGVEMDEVVLRVARQYFGLEDGEF----LQVSVGD 319
             L VG G G ++  +      +    V++D  V+  ++++     G+     + V V D
Sbjct: 78  HVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDD 137

Query: 320 AIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAP 379
               +                              + +N++DVIMVD            P
Sbjct: 138 GFMHIA-----------------------------KSENQYDVIMVDSTEPV------GP 162

Query: 380 PVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEFRDVFQELY 429
            V    K         L + GIFV     P   F   LI   +   +E++
Sbjct: 163 AVNLFTKGFYAGIAKALKEDGIFVAQTDNP--WFTPELITNVQRDVKEIF 210

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	478
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	99.98
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	99.97
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	99.97
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	99.97
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	99.97
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	99.97
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	99.97
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.29
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.22
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	99.21
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.09
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.07
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.02
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.02
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.01
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.01
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	98.98
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	98.97
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	98.96
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	98.95
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	98.95
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	98.91
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	98.88
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	98.88
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	98.88
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	98.88
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	98.87
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	98.87
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	98.86
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	98.86
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	98.86
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	98.83
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	98.82
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	98.82
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	98.8
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	98.79
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.75
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	98.74
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	98.74
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	98.74
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	98.74
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.74
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	98.72
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	98.72
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	98.7
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	98.68
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	98.68
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	98.68
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	98.66
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	98.66
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	98.65
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	98.65
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	98.64
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	98.64
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	98.61
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	98.61
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	98.57
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	98.56
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	98.56
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.56
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	98.56
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	98.54
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	98.54
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	98.5
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	98.47
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	98.46
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.44
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.4
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.2
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.16
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	98.16
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.1
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.04
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	97.8
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.78
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	97.75
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	97.73
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	97.73
d2h00a1	250	Methyltransferase 10 domain containing protein MET	97.72
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	97.6
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	97.56
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	97.48
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	97.41
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	97.41
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	97.31
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	97.3
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	97.27
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	97.23
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	97.22
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.2
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	97.0
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	96.89
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	96.87
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.86
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.75
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	96.74
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.56
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.56
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	96.53
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.52
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	96.52
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	96.47
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.46
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.36
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.21
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	96.08
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	96.08
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	95.95
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	95.78
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	95.75
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	95.68
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	95.58
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	95.53
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	95.38
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	95.06
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.05
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	94.81
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	94.65
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.61
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	94.34
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	94.32
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	94.0
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	93.87
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	93.28
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	93.04
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	93.04
d2oo3a1	271	Uncharacterized protein LPG1296 {Legionella pneumo	92.91
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	92.68
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	92.59
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	92.4
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	92.28
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	92.27
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	91.99
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	91.73
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	90.83
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	90.8
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	90.47
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	90.21
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	90.15
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	89.78
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	89.11
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	88.88
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	88.38
d1dz3a_	123	Sporulation response regulator Spo0A {Bacillus ste	88.13
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	87.7
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	87.7
d1a04a2	138	Nitrate/nitrite response regulator (NarL), receive	87.26
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	87.12
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	87.04
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	86.1
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	85.98
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	85.71
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	85.49
d2r25b1	128	Response regulator Sin1 {Baker's yeast (Saccharomy	85.11
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	83.79
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	83.79
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	83.38
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	83.35
d2b4aa1	118	Hypothetical protein BH3024 {Bacillus halodurans [	82.76
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	82.74
d1kgsa2	122	PhoB receiver domain {Thermotoga maritima [TaxId:	82.61
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	81.92
d1p2fa2	120	Response regulator DrrB {Thermotoga maritima [TaxI	81.75
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	81.42
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	81.31
d1u0sy_	118	CheY protein {Thermotoga maritima [TaxId: 2336]}	81.22
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	81.13
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	81.11
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	81.08
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	80.93
d1dbwa_	123	Transcriptional regulatory protein FixJ, receiver	80.55
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	80.39

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.98  E-value=4.9e-31  Score=260.18  Aligned_cols=213  Identities=20%  Similarity=0.207  Sum_probs=170.0

Q ss_pred             ceeeEEEEeEecccCceEEEEEeeccccCCccccceeeEEEEeeCCCeEEeeeeecccccccccccccCCccccccCCcc
Q 038592          155 VVSSVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGV  234 (478)
Q Consensus       155 i~~r~vl~~~~S~~~g~~vVedv~~e~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~d~~~  234 (478)
                      +.++++|++++|+||...|+|+-            .++|+++++  +.+|+..                      .|   
T Consensus        14 ~~~~~~l~~~~S~yq~I~v~~~~------------~~gr~L~Ld--g~~q~~~----------------------~d---   54 (276)
T d1mjfa_          14 FKIKKKIYEKLSKYQKIEVYETE------------GFGRLLALD--GTVQLVT----------------------LG---   54 (276)
T ss_dssp             ECEEEEEEEEECSSCEEEEEEES------------SSCEEEEET--TEEEEET----------------------TT---
T ss_pred             EEEeeEEEEecCCCeEEEEEEeC------------CCCeEEEEC--Cceeeec----------------------cc---
Confidence            46789999999999999999831            356777774  7899741                      12   


Q ss_pred             cchhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC------
Q 038592          235 LVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE------  308 (478)
Q Consensus       235 L~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~------  308 (478)
                       .+.||++|++..++.++         .|++|||||+|+|++++.+.++...+|++|||||+|+++|++||++.      
T Consensus        55 -e~~Yhe~l~~~~l~~~~---------~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~  124 (276)
T d1mjfa_          55 -ERSYHEPLVHPAMLAHP---------KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEA  124 (276)
T ss_dssp             -THHHHHHHHHHHHHHSS---------CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHH
T ss_pred             -hhHHHHHhhcchhhcCC---------CCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhh
Confidence             57899999987666553         38999999999999999988886679999999999999999999864      


Q ss_pred             ----CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCC
Q 038592          309 ----DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFV  384 (478)
Q Consensus       309 ----~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~  384 (478)
                          .++|++++++||++|+++                              .++||+||+|++++..      ||..|+
T Consensus       125 ~~~~~d~rv~i~~~Da~~~l~~------------------------------~~~yDvIi~D~~~~~~------~~~~L~  168 (276)
T d1mjfa_         125 MLNGKHEKAKLTIGDGFEFIKN------------------------------NRGFDVIIADSTDPVG------PAKVLF  168 (276)
T ss_dssp             HHTTCCSSEEEEESCHHHHHHH------------------------------CCCEEEEEEECCCCC-----------TT
T ss_pred             hhccCCCCceEEEChHHHHHhc------------------------------cCCCCEEEEeCCCCCC------Cccccc
Confidence                379999999999999965                              3579999999987542      577899


Q ss_pred             hHHHHHHHHHccCcCcEEEEEeCCC--CchHHHHHHHHHHHhcCccEEEee--cc--cceEEEEEEcCCCCCCc
Q 038592          385 RKDVLLAARLILSDFGIFVMNVIPP--NRSFYDMLIQEFRDVFQELYEIDV--GN--EENFVLIATGLSIVSSG  452 (478)
Q Consensus       385 ~~efl~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~~~~v--~~--~~N~Vl~a~~~~~~~~~  452 (478)
                      +.+|++.++++|+|+|++++|..++  +......+.++|+++|++|+.+.+  ..  +....++|++.+.....
T Consensus       169 t~eF~~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~~~~tl~~~F~~v~~y~~~vP~y~~~w~f~~as~~~~~~~~  242 (276)
T d1mjfa_         169 SEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYYYSFPVIGYASPWAFLVGVKGDIDFTK  242 (276)
T ss_dssp             SHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCSEEEEEEECCTTSSSSEEEEEEEESSCCTTC
T ss_pred             CHHHHHhhHhhcCCCceEEEecCCcchhHHHHHHHHHHHHhhCCeeEEEEecCcCCCCceEEEEEeCCCCChhh
Confidence            9999999999999999999998765  455677889999999999876653  22  23456788887765443

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.9e-31  Score=261.88  Aligned_cols=212  Identities=15%  Similarity=0.181  Sum_probs=165.7

Q ss_pred             ceeeEEEEeEecccCceEEEEEeeccccCCccccceeeEEEEeeCCCeEEeeeeecccccccccccccCCccccccCCcc
Q 038592          155 VVSSVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGV  234 (478)
Q Consensus       155 i~~r~vl~~~~S~~~g~~vVedv~~e~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~d~~~  234 (478)
                      +++.++|++++|+||...|++.-            .++|+++++  +.+|+.-                 +     |   
T Consensus        20 ~~~~~~l~~~~S~yQ~I~v~~~~------------~~g~~L~lD--g~~q~~~-----------------~-----d---   60 (285)
T d2o07a1          20 LQVEQLLHHRRSRYQDILVFRSK------------TYGNVLVLD--GVIQCTE-----------------R-----D---   60 (285)
T ss_dssp             EEEEEEEEEEECSSSEEEEEEES------------SSCEEEEET--TEEEEET-----------------T-----T---
T ss_pred             EEEeeEEEeCCCCCcEEEEEEeC------------CCCeEEEEC--CcEEEec-----------------C-----C---
Confidence            56789999999999999988731            356677775  7899750                 1     2   


Q ss_pred             cchhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcC----CCC
Q 038592          235 LVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFG----LED  309 (478)
Q Consensus       235 L~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg----~~~  309 (478)
                       .+.||++|++..++.++         +|++|||||+|+|++++.+.++. ..+|++|||||+|+++|++||.    ..+
T Consensus        61 -e~~Yhe~l~h~~l~~~~---------~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~  130 (285)
T d2o07a1          61 -EFSYQEMIANLPLCSHP---------NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYS  130 (285)
T ss_dssp             -HHHHHHHHHHHHHTTSS---------SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGG
T ss_pred             -HHHHHHHhccHhhhhCc---------CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccC
Confidence             68899999988666553         38999999999999999999987 4799999999999999999994    236


Q ss_pred             CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHH
Q 038592          310 GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVL  389 (478)
Q Consensus       310 d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl  389 (478)
                      ++|++++++||++||++                             ..++||+||+|++++..      ||..|++.+|+
T Consensus       131 d~rv~i~~~Da~~~l~~-----------------------------~~~~yDvIi~D~~~p~~------~~~~L~t~eF~  175 (285)
T d2o07a1         131 SSKLTLHVGDGFEFMKQ-----------------------------NQDAFDVIITDSSDPMG------PAESLFKESYY  175 (285)
T ss_dssp             CTTEEEEESCHHHHHHT-----------------------------CSSCEEEEEEECC-----------------CHHH
T ss_pred             CCCceEEEccHHHHHhc-----------------------------CCCCCCEEEEcCCCCCC------cccccccHHHH
Confidence            89999999999999975                             45689999999987542      57889999999


Q ss_pred             HHHHHccCcCcEEEEEeCCC--CchHHHHHHHHHHHhcCccEEEe--ecc--cce-EEEEEEcCCCCC
Q 038592          390 LAARLILSDFGIFVMNVIPP--NRSFYDMLIQEFRDVFQELYEID--VGN--EEN-FVLIATGLSIVS  450 (478)
Q Consensus       390 ~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~~~~--v~~--~~N-~Vl~a~~~~~~~  450 (478)
                      +.++++|+|+|++++|..++  +....+.+.++|+++|+++..+.  ++.  .++ ..++|++.|...
T Consensus       176 ~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~~~~tl~~~F~~v~~y~~~vP~~~~g~w~f~~aSk~p~~~  243 (285)
T d2o07a1         176 QLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVAYAYCTIPTYPSGQIGFMLCSKNPSTN  243 (285)
T ss_dssp             HHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEEEEEESSTTCC
T ss_pred             HHHHHhcCCCCeEEEeccchhhhHHHHHHHHHHHHhcCCeeeEEeeeeeecCCCCeEEEEEECCcccc
Confidence            99999999999999999776  56677889999999999875443  332  233 567899887543

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=1.1e-30  Score=261.07  Aligned_cols=210  Identities=19%  Similarity=0.210  Sum_probs=162.9

Q ss_pred             ceeeEEEEeEecccCceEEEEEeeccccCCccccceeeEEEEeeCCCeEEeeeeecccccccccccccCCccccccCCcc
Q 038592          155 VVSSVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGV  234 (478)
Q Consensus       155 i~~r~vl~~~~S~~~g~~vVedv~~e~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~d~~~  234 (478)
                      ++++++|++++|+||...|+|.            ..|+++++++  +.+|+.-                 +     |   
T Consensus        48 ~~v~~vl~~~~S~yQ~I~i~~~------------~~~G~~L~LD--g~~q~~e-----------------~-----d---   88 (312)
T d2b2ca1          48 LQVKKVLFHEKSKYQDVLVFES------------TTYGNVLVLD--GIVQATE-----------------R-----D---   88 (312)
T ss_dssp             EEEEEEEEEEECSSCEEEEEEE------------TTTEEEEEET--TEEEEES-----------------S-----S---
T ss_pred             EEEEEEEEecCCCCeEEEEEEc------------CCcCCEEEEC--Cceeeec-----------------c-----c---
Confidence            6788999999999999999872            1366666775  7999741                 1     2   


Q ss_pred             cchhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhCC-CEEEEEECChHHHHHHHHhcCCC----C
Q 038592          235 LVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLD-FEVVGVEMDEVVLRVARQYFGLE----D  309 (478)
Q Consensus       235 L~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~~----~  309 (478)
                       ++.||++|++..++.++         +|++|||||+|+|++++++.++.+ .+|++|||||+|+++|++||...    .
T Consensus        89 -e~~YhE~l~h~pl~~~~---------~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~  158 (312)
T d2b2ca1          89 -EFSYQEMLAHLPMFAHP---------DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFS  158 (312)
T ss_dssp             -SSHHHHHHHHHHHHHSS---------SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGG
T ss_pred             -HHHHHHHhhhHHHhcCC---------CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccC
Confidence             57899999998766653         389999999999999999999876 59999999999999999999652    5


Q ss_pred             CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHH
Q 038592          310 GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVL  389 (478)
Q Consensus       310 d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl  389 (478)
                      +||++++++||++||++                             ...+||+||+|++++..      ||..|++.+|+
T Consensus       159 dprv~i~i~Da~~~l~~-----------------------------~~~~yDvII~D~~dp~~------~~~~L~t~eFy  203 (312)
T d2b2ca1         159 HPKLDLFCGDGFEFLKN-----------------------------HKNEFDVIITDSSDPVG------PAESLFGQSYY  203 (312)
T ss_dssp             CTTEEEECSCHHHHHHH-----------------------------CTTCEEEEEECCC-------------------HH
T ss_pred             CCCeEEEEchHHHHHHh-----------------------------CCCCCCEEEEcCCCCCC------cchhhhhHHHH
Confidence            79999999999999976                             56789999999876532      57889999999


Q ss_pred             HHHHHccCcCcEEEEEeCCC--CchHHHHHHHHHHHhcCccEEEe--ecc--cce-EEEEEEcCCC
Q 038592          390 LAARLILSDFGIFVMNVIPP--NRSFYDMLIQEFRDVFQELYEID--VGN--EEN-FVLIATGLSI  448 (478)
Q Consensus       390 ~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~~~~--v~~--~~N-~Vl~a~~~~~  448 (478)
                      +.++++|+|+|++++|..+.  +.+....+.+.++++|+++..+.  ++.  .++ ..++|++.+.
T Consensus       204 ~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~v~~y~~~vPtyp~G~w~f~~aSk~~~  269 (312)
T d2b2ca1         204 ELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVTYAQSIVSTYPSGSMGYLICAKNAN  269 (312)
T ss_dssp             HHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEEEEEESSTT
T ss_pred             HHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHhhhccceEEEeeeccCCcCCccceeeEEECCCC
Confidence            99999999999999998776  56677889999999999875443  332  233 3678887644

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.97  E-value=8e-31  Score=260.61  Aligned_cols=212  Identities=17%  Similarity=0.177  Sum_probs=168.7

Q ss_pred             ceeeEEEEeEecccCceEEEEEeeccccCCccccceeeEEEEeeCCCeEEeeeeecccccccccccccCCccccccCCcc
Q 038592          155 VVSSVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGV  234 (478)
Q Consensus       155 i~~r~vl~~~~S~~~g~~vVedv~~e~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~d~~~  234 (478)
                      +++.++|++++|+||...|+|..            .|+++++++  +.+|+.                 .+     |   
T Consensus        31 ~~v~~~l~~~~S~yQ~i~i~~s~------------~~G~~l~LD--g~~q~~-----------------~~-----D---   71 (295)
T d1inla_          31 MKMNRVIYSGQSDIQRIDIFENP------------DLGVVFALD--GITMTT-----------------EK-----D---   71 (295)
T ss_dssp             EECSEEEEEEECSSCEEEEEEET------------TTEEEEEET--TEEEEE-----------------TT-----T---
T ss_pred             EEEEEEEEecCCCCcEEEEEEcC------------CcceEEEEC--CEEEEe-----------------cC-----c---
Confidence            46789999999999999999831            367777874  799975                 11     2   


Q ss_pred             cchhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhCC-CEEEEEECChHHHHHHHHhcCCC----C
Q 038592          235 LVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLD-FEVVGVEMDEVVLRVARQYFGLE----D  309 (478)
Q Consensus       235 L~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~~----~  309 (478)
                       ++.||++|++..++.++         +|++|||||+|+|++++++.++.+ .+|++|||||+|+++|++||...    +
T Consensus        72 -e~~YhE~l~h~pl~~~~---------~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~  141 (295)
T d1inla_          72 -EFMYHEMLAHVPMFLHP---------NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFD  141 (295)
T ss_dssp             -HHHHHHHHHHHHHHHSS---------SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGG
T ss_pred             -hhhhhhhhcchhHhhCC---------CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhccccc
Confidence             68999999998776654         389999999999999999999875 69999999999999999999642    5


Q ss_pred             CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHH
Q 038592          310 GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVL  389 (478)
Q Consensus       310 d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl  389 (478)
                      ++|++++++||++|+++                             .+.+||+||+|++++..     .|+..|++.+|+
T Consensus       142 d~rv~v~~~Da~~~l~~-----------------------------~~~~yDvIi~D~~dp~~-----~~~~~L~t~efy  187 (295)
T d1inla_         142 DPRAEIVIANGAEYVRK-----------------------------FKNEFDVIIIDSTDPTA-----GQGGHLFTEEFY  187 (295)
T ss_dssp             CTTEEEEESCHHHHGGG-----------------------------CSSCEEEEEEEC---------------CCSHHHH
T ss_pred             CCCcEEEhhhHHHHHhc-----------------------------CCCCCCEEEEcCCCCCc-----CchhhhccHHHH
Confidence            89999999999999965                             46789999999887642     256779999999


Q ss_pred             HHHHHccCcCcEEEEEeCCC--CchHHHHHHHHHHHhcCccEEEe--ecc---cceEEEEEEcCCCC
Q 038592          390 LAARLILSDFGIFVMNVIPP--NRSFYDMLIQEFRDVFQELYEID--VGN---EENFVLIATGLSIV  449 (478)
Q Consensus       390 ~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~~~~--v~~---~~N~Vl~a~~~~~~  449 (478)
                      +.++++|+|+|++++|..++  +......+.++++++|+++..+.  +..   +....++|++.+..
T Consensus       188 ~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl~~vF~~v~~y~~~vPtyp~G~w~f~~aSk~~~p  254 (295)
T d1inla_         188 QACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFMTTYPSGMWSYTFASKGIDP  254 (295)
T ss_dssp             HHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEEEEECTTSTTSEEEEEEEESSCCT
T ss_pred             HHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHHHhhcceeEEEEeeeceecCcccEEEEEeCCCCc
Confidence            99999999999999999886  56678889999999999875443  332   33456788877543

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.97  E-value=4.4e-30  Score=253.04  Aligned_cols=210  Identities=20%  Similarity=0.224  Sum_probs=172.5

Q ss_pred             ceeeEEEEeEecccCceEEEEEeeccccCCccccceeeEEEEeeCCCeEEeeeeecccccccccccccCCccccccCCcc
Q 038592          155 VVSSVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGV  234 (478)
Q Consensus       155 i~~r~vl~~~~S~~~g~~vVedv~~e~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~d~~~  234 (478)
                      ++..++|++.+|+||...|++.-            .++|+++++  +.+|+..                 +     |   
T Consensus        17 ~~i~~~l~~~~s~yQ~I~v~~~~------------~~g~~L~LD--g~~q~~~-----------------~-----d---   57 (274)
T d1iy9a_          17 MKVNKTLHTEQTEFQHLEMVETE------------EFGNMLFLD--GMVMTSE-----------------K-----D---   57 (274)
T ss_dssp             EEEEEEEEEEECSSCEEEEEEET------------TTEEEEEET--TEEEEET-----------------T-----T---
T ss_pred             EEEeeEEEeCcCCCcEEEEEEcC------------CcCeEEEEC--Cceeeec-----------------C-----c---
Confidence            56778999999999999998731            356677774  7899751                 1     1   


Q ss_pred             cchhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhCC-CEEEEEECChHHHHHHHHhcC----CCC
Q 038592          235 LVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLD-FEVVGVEMDEVVLRVARQYFG----LED  309 (478)
Q Consensus       235 L~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg----~~~  309 (478)
                       +..||++|++..++.++         +|++||+||+|+|++++++.++.+ .+|++|||||+|+++|++||+    ..+
T Consensus        58 -e~~Yhe~l~h~~l~~~~---------~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~  127 (274)
T d1iy9a_          58 -EFVYHEMVAHVPLFTHP---------NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLD  127 (274)
T ss_dssp             -HHHHHHHHHHHHHHHSS---------SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTT
T ss_pred             -hhhchhhhccchhhccC---------CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhccccc
Confidence             68899999998777654         378999999999999999999875 699999999999999999994    347


Q ss_pred             CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHH
Q 038592          310 GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVL  389 (478)
Q Consensus       310 d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl  389 (478)
                      ++|++++++||++||++                             .+++||+||+|++++..      +|..|++.+|+
T Consensus       128 d~r~~i~~~D~~~~l~~-----------------------------~~~~yDvIi~D~~~p~~------~~~~L~t~eFy  172 (274)
T d1iy9a_         128 DPRVDVQVDDGFMHIAK-----------------------------SENQYDVIMVDSTEPVG------PAVNLFTKGFY  172 (274)
T ss_dssp             STTEEEEESCSHHHHHT-----------------------------CCSCEEEEEESCSSCCS------CCCCCSTTHHH
T ss_pred             CCCeEEEechHHHHHhh-----------------------------cCCCCCEEEEcCCCCCC------cchhhccHHHH
Confidence            89999999999999975                             46789999999876542      46789999999


Q ss_pred             HHHHHccCcCcEEEEEeCCC--CchHHHHHHHHHHHhcCccEEEe--ec---ccceEEEEEEcCCC
Q 038592          390 LAARLILSDFGIFVMNVIPP--NRSFYDMLIQEFRDVFQELYEID--VG---NEENFVLIATGLSI  448 (478)
Q Consensus       390 ~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~~~~--v~---~~~N~Vl~a~~~~~  448 (478)
                      +.++++|+|+|++++|..++  +.+....+.++|+++|+++..+.  ++   .+....++|++...
T Consensus       173 ~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~~F~~v~~y~~~vPsy~~g~w~f~~aS~~~~  238 (274)
T d1iy9a_         173 AGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWTFTIGSKKYD  238 (274)
T ss_dssp             HHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEECCTTSGGGCEEEEEEESSCC
T ss_pred             HHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhhhcCceEEEEEEeeecCCCceEEEEEcCCCC
Confidence            99999999999999999776  56677889999999999875554  33   23345667887643

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.97  E-value=4.8e-30  Score=254.66  Aligned_cols=210  Identities=15%  Similarity=0.238  Sum_probs=171.5

Q ss_pred             ceeeEEEEeEecccCceEEEEEeeccccCCccccceeeEEEEeeCCCeEEeeeeecccccccccccccCCccccccCCcc
Q 038592          155 VVSSVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGV  234 (478)
Q Consensus       155 i~~r~vl~~~~S~~~g~~vVedv~~e~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~d~~~  234 (478)
                      +++.++|++++|+||...|+|.            ..++|+++++  +.+|+.     +            +     |   
T Consensus        22 ~~v~~~l~~~~S~yQ~i~v~~~------------~~~gr~L~LD--g~~q~~-----e------------~-----d---   62 (290)
T d1xj5a_          22 LKVEKVLFQGKSDYQDVIVFQS------------ATYGKVLVLD--GVIQLT-----E------------R-----D---   62 (290)
T ss_dssp             EEEEEEEEEEECSSCEEEEEEE------------SSSCEEEEET--TEEEEE-----T------------T-----T---
T ss_pred             EEEeeEEEeCCCCCeEEEEEEe------------CCCCeEEEEC--CeEeee-----c------------c-----c---
Confidence            6678999999999999888872            1467888885  789975     1            1     2   


Q ss_pred             cchhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhCC-CEEEEEECChHHHHHHHHhcCC----CC
Q 038592          235 LVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLD-FEVVGVEMDEVVLRVARQYFGL----ED  309 (478)
Q Consensus       235 L~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~----~~  309 (478)
                       ++.||++|++..++.++         +|++|||||+|+|++++++.++.+ .+|++|||||+|+++|++||..    .+
T Consensus        63 -e~~Yhe~l~h~~~~~~~---------~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~  132 (290)
T d1xj5a_          63 -ECAYQEMITHLPLCSIP---------NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYE  132 (290)
T ss_dssp             -HHHHHHHHHHHHHTTSS---------CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGG
T ss_pred             -hhHHHHHHhhHHHhhCC---------CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhcccc
Confidence             68899999998776654         388999999999999999999876 5999999999999999999953    35


Q ss_pred             CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHH
Q 038592          310 GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVL  389 (478)
Q Consensus       310 d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl  389 (478)
                      ++|++++++||++|+++.                            .+.+||+||+|++++..      ||..|++.+|+
T Consensus       133 ~~r~~i~~~Da~~~l~~~----------------------------~~~~yDvIi~D~~dp~~------~~~~L~t~eF~  178 (290)
T d1xj5a_         133 DPRVNLVIGDGVAFLKNA----------------------------AEGSYDAVIVDSSDPIG------PAKELFEKPFF  178 (290)
T ss_dssp             STTEEEEESCHHHHHHTS----------------------------CTTCEEEEEECCCCTTS------GGGGGGSHHHH
T ss_pred             CCCcEEEEccHHHHHhhc----------------------------cccCccEEEEcCCCCCC------cchhhCCHHHH
Confidence            899999999999999751                            35689999999987542      57889999999


Q ss_pred             HHHHHccCcCcEEEEEeCCC--CchHHHHHHHHHHHhcCccEEE---eecc--cce-EEEEEEcCC
Q 038592          390 LAARLILSDFGIFVMNVIPP--NRSFYDMLIQEFRDVFQELYEI---DVGN--EEN-FVLIATGLS  447 (478)
Q Consensus       390 ~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~~~---~v~~--~~N-~Vl~a~~~~  447 (478)
                      +.++++|+|+|++++|+.++  +.+....++++++++|+++..+   .++.  .+. ..++|++.+
T Consensus       179 ~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~~~~y~~~~vPty~~g~w~f~~as~~~  244 (290)
T d1xj5a_         179 QSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIFKGSVNYAWTSVPTYPSGVIGFMLCSTEG  244 (290)
T ss_dssp             HHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSSCEEEEEEECTTSGGGEEEEEEEECSS
T ss_pred             HHHHHhcCCCcEEEEecCCcHHHHHHHHHHHhhhhhhcccceeEeeEeeeeecCCceEEEEEeCCC
Confidence            99999999999999999876  5667788999999999986432   3443  233 356677654

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=99.97  E-value=7.8e-30  Score=255.58  Aligned_cols=212  Identities=17%  Similarity=0.183  Sum_probs=168.2

Q ss_pred             ceeeEEEEeEecccCceEEEEEeeccccCCccccceeeEEEEeeCCCeEEeeeeecccccccccccccCCccccccCCcc
Q 038592          155 VVSSVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGV  234 (478)
Q Consensus       155 i~~r~vl~~~~S~~~g~~vVedv~~e~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~d~~~  234 (478)
                      .++.++|++++|+||.+.|++.-            .+.|+++++  +.+|+..                 +     |   
T Consensus        19 ~~~~~~l~~~~s~yQ~I~v~~~~------------~~G~~L~ld--g~~q~~~-----------------~-----d---   59 (312)
T d1uira_          19 RRMERVIASGKTPFQDYFLFESK------------GFGKVLILD--KDVQSTE-----------------R-----D---   59 (312)
T ss_dssp             EECSEEEEEEECSSCEEEEEEET------------TTEEEEEET--TEEEEET-----------------T-----T---
T ss_pred             EEEEEEEEeCCCCCceEEEEEcC------------CcCcEEEEC--Ceeeecc-----------------c-----c---
Confidence            56778999999999999999831            245555664  7899751                 1     2   


Q ss_pred             cchhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcC-----CC
Q 038592          235 LVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFG-----LE  308 (478)
Q Consensus       235 L~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg-----~~  308 (478)
                       ++.||++|++..++.++         +|++||+||+|+|++++++.++. ..+|++|||||+|+++|++||.     ..
T Consensus        60 -e~~Yhe~l~h~~l~~~~---------~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~  129 (312)
T d1uira_          60 -EYIYHETLVHPAMLTHP---------EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAF  129 (312)
T ss_dssp             -HHHHHHHHHHHHHHHSS---------CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGG
T ss_pred             -HHHHHHHHhhhhhhhCC---------CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCcc
Confidence             68899999987666553         38999999999999999999886 4699999999999999999993     23


Q ss_pred             CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHH
Q 038592          309 DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDV  388 (478)
Q Consensus       309 ~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~ef  388 (478)
                      +++|++++++||++|+++                             .+.+||+||+|+.++..   ...|+..|++.+|
T Consensus       130 ~d~rv~i~~~Da~~~l~~-----------------------------~~~~yDvIi~D~~dp~~---~~~~~~~L~t~eF  177 (312)
T d1uira_         130 DDPRAVLVIDDARAYLER-----------------------------TEERYDVVIIDLTDPVG---EDNPARLLYTVEF  177 (312)
T ss_dssp             GCTTEEEEESCHHHHHHH-----------------------------CCCCEEEEEEECCCCBS---TTCGGGGGSSHHH
T ss_pred             CCCceEEEEchHHHHhhh-----------------------------cCCcccEEEEeCCCccc---ccchhhhhhhHHH
Confidence            689999999999999976                             46789999999865432   2236778999999


Q ss_pred             HHHHHHccCcCcEEEEEeCCC---CchHHHHHHHHHHHhcCccEEEe--ecc--cceEEEEEEcCC
Q 038592          389 LLAARLILSDFGIFVMNVIPP---NRSFYDMLIQEFRDVFQELYEID--VGN--EENFVLIATGLS  447 (478)
Q Consensus       389 l~~~~~~L~~~Gilv~N~~~~---~~~~~~~v~~~l~~vF~~v~~~~--v~~--~~N~Vl~a~~~~  447 (478)
                      ++.|+++|+|||++++|+.+.   ..++.+.+.++|+++|++|..+.  ++.  ..-..++|++.+
T Consensus       178 ~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~F~~V~~y~~~vPs~~~~w~f~~aS~~~  243 (312)
T d1uira_         178 YRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLNFGFLLASDAF  243 (312)
T ss_dssp             HHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEEEEGGGTEEEEEEEEESSS
T ss_pred             HHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHHhCceEEEEEeeeCCcCCCCEeEEEeCCC
Confidence            999999999999999998654   34566778899999999886554  332  223467799774

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.8e-11  Score=115.31  Aligned_cols=109  Identities=25%  Similarity=0.245  Sum_probs=91.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      +++||.||.|.|..+.++....  +.+|+++|+||+..+.|+++|... ..++++++++|+.+.+.+....         
T Consensus        60 ~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~---------  130 (219)
T d2avda1          60 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAA---------  130 (219)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHT---------
T ss_pred             CCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhh---------
Confidence            7899999999999999998875  579999999999999999998422 3578999999999999876542         


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE-EeCC
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM-NVIP  408 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~-N~~~  408 (478)
                                     .....||+|++|.+...             ..++++.+.++|++||++++ |+..
T Consensus       131 ---------------~~~~~fD~ifiD~dk~~-------------y~~~~~~~~~lL~~GGvii~Dn~l~  172 (219)
T d2avda1         131 ---------------GEAGTFDVAVVDADKEN-------------CSAYYERCLQLLRPGGILAVLRVLW  172 (219)
T ss_dssp             ---------------TCTTCEEEEEECSCSTT-------------HHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred             ---------------cccCCccEEEEeCCHHH-------------HHHHHHHHHHHhcCCcEEEEeCCcc
Confidence                           14568999999976542             26788999999999999998 6644

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.2e-11  Score=116.50  Aligned_cols=107  Identities=17%  Similarity=0.032  Sum_probs=86.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.||+|.|.++.+++++...+|++||+||.+++.|++++.- ...+++++.+|+......                
T Consensus        54 g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~----------------  116 (229)
T d1zx0a1          54 GGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPR-QTHKVIPLKGLWEDVAPT----------------  116 (229)
T ss_dssp             CEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGG-CSSEEEEEESCHHHHGGG----------------
T ss_pred             CCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhh-cccccccccccccccccc----------------
Confidence            469999999999999999887667999999999999999999754 345688899999887543                


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC-ChHHHHHHHHHccCcCcEEEE
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF-VRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f-~~~efl~~~~~~L~~~Gilv~  404 (478)
                                  .++.+||.|++|.......      ..++ ....|++.++++|+|||+|++
T Consensus       117 ------------~~~~~fD~i~fD~~~~~~~------~~~~~~~~~~~~~~~r~LkpGG~~~~  161 (229)
T d1zx0a1         117 ------------LPDGHFDGILYDTYPLSEE------TWHTHQFNFIKNHAFRLLKPGGVLTY  161 (229)
T ss_dssp             ------------SCTTCEEEEEECCCCCBGG------GTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred             ------------cccccccceeecccccccc------cccccCHHHHHHHHHHHcCCCcEEEE
Confidence                        2567899999997654321      2222 346799999999999999986

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.21  E-value=2.5e-11  Score=114.97  Aligned_cols=109  Identities=13%  Similarity=0.186  Sum_probs=91.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      |++||.||.+.|..+.++...+  +.+|+.+|+||+..+.|+++|... ..++++++++|+.+.+.++....        
T Consensus        60 ~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~--------  131 (227)
T d1susa1          60 AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDE--------  131 (227)
T ss_dssp             CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCG--------
T ss_pred             CCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhcc--------
Confidence            7899999999999999999765  589999999999999999998532 35699999999999999876421        


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE-EeC
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM-NVI  407 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~-N~~  407 (478)
                                     ....+||+||+|++...             -.++++.+.++|++||++++ |+.
T Consensus       132 ---------------~~~~~fD~iFiDa~k~~-------------y~~~~e~~~~ll~~gGiii~DNvl  172 (227)
T d1susa1         132 ---------------KNHGSYDFIFVDADKDN-------------YLNYHKRLIDLVKVGGVIGYDNTL  172 (227)
T ss_dssp             ---------------GGTTCBSEEEECSCSTT-------------HHHHHHHHHHHBCTTCCEEEETTT
T ss_pred             ---------------ccCCceeEEEeccchhh-------------hHHHHHHHHhhcCCCcEEEEccCC
Confidence                           13467999999986532             36899999999999999998 664

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.09  E-value=1.1e-09  Score=99.41  Aligned_cols=117  Identities=19%  Similarity=0.164  Sum_probs=89.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||+|.|.++..+.+. ..+|++||+||.+++.|++.+... -.++++++.+|+.+.+.                
T Consensus        34 g~~VLDiGcGsG~~s~~lA~~-~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~----------------   96 (186)
T d1l3ia_          34 NDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALC----------------   96 (186)
T ss_dssp             TCEEEEESCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHT----------------
T ss_pred             CCEEEEEECCeEccccccccc-ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhccc----------------
Confidence            469999999999999988765 469999999999999999875321 23689999999988752                


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHH
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEF  421 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l  421 (478)
                                    ....||+|+++....             ...++++.+++.|+|+|.++++....+.  ...+...+
T Consensus        97 --------------~~~~~D~v~~~~~~~-------------~~~~~~~~~~~~LkpgG~lvi~~~~~e~--~~~~~~~l  147 (186)
T d1l3ia_          97 --------------KIPDIDIAVVGGSGG-------------ELQEILRIIKDKLKPGGRIIVTAILLET--KFEAMECL  147 (186)
T ss_dssp             --------------TSCCEEEEEESCCTT-------------CHHHHHHHHHHTEEEEEEEEEEECBHHH--HHHHHHHH
T ss_pred             --------------ccCCcCEEEEeCccc-------------cchHHHHHHHHHhCcCCEEEEEeecccc--HHHHHHHH
Confidence                          356799999963211             2378999999999999999988765422  23345556


Q ss_pred             HHhc
Q 038592          422 RDVF  425 (478)
Q Consensus       422 ~~vF  425 (478)
                      ++..
T Consensus       148 ~~~~  151 (186)
T d1l3ia_         148 RDLG  151 (186)
T ss_dssp             HHTT
T ss_pred             HHcC
Confidence            6543

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.07  E-value=4.3e-10  Score=102.73  Aligned_cols=135  Identities=19%  Similarity=0.253  Sum_probs=98.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC--CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE--DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~--~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.+|+|.|.++..+.+. ..+|+++|+|+.+++.|++.+...  .+.+++++.+|..+.+                
T Consensus        53 ~~~VLDiGcG~G~~~~~la~~-~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~----------------  115 (194)
T d1dusa_          53 DDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENV----------------  115 (194)
T ss_dssp             TCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTC----------------
T ss_pred             CCeEEEEeecCChhHHHHHhh-ccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhh----------------
Confidence            579999999999999988875 469999999999999999865422  3467999999987653                


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC---ChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHH
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF---VRKDVLLAARLILSDFGIFVMNVIPPNRSFYDML  417 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f---~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v  417 (478)
                                     .+.+||+|++|.            |-+.   ....+++.+++.|+|||.+++-+...  ...+.+
T Consensus       116 ---------------~~~~fD~Ii~~~------------p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~--~~~~~~  166 (194)
T d1dusa_         116 ---------------KDRKYNKIITNP------------PIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTK--QGAKSL  166 (194)
T ss_dssp             ---------------TTSCEEEEEECC------------CSTTCHHHHHHHHHHHHHHEEEEEEEEEEEEST--HHHHHH
T ss_pred             ---------------ccCCceEEEEcc------------cEEecchhhhhHHHHHHHhcCcCcEEEEEEeCc--CCHHHH
Confidence                           456899999952            2111   23678999999999999887633222  224556


Q ss_pred             HHHHHHhcCccEEEeecccceEEEEEE
Q 038592          418 IQEFRDVFQELYEIDVGNEENFVLIAT  444 (478)
Q Consensus       418 ~~~l~~vF~~v~~~~v~~~~N~Vl~a~  444 (478)
                      ...+++.|..+..+.... .=.|+-|.
T Consensus       167 ~~~l~~~f~~~~~~~~~~-gf~vl~a~  192 (194)
T d1dusa_         167 AKYMKDVFGNVETVTIKG-GYRVLKSK  192 (194)
T ss_dssp             HHHHHHHHSCCEEEEEET-TEEEEEEE
T ss_pred             HHHHHHhCCcEEEEEecC-CcEEEEEE
Confidence            777888998876554332 23445544

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.02  E-value=3.4e-10  Score=106.68  Aligned_cols=103  Identities=16%  Similarity=0.118  Sum_probs=81.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC-CCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL-EDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~-~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||||.|.++..+.+..+.+|++||+++.+++.|++...- ..+++++++++|+.++.                 
T Consensus        34 g~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~-----------------   96 (245)
T d1nkva_          34 GTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV-----------------   96 (245)
T ss_dssp             TCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC-----------------
T ss_pred             CCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhcc-----------------
Confidence            469999999999999999887789999999999999999986521 13568999999987752                 


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                    .+.+||+|+.=- .   ...+   +   --..+|+.+++.|+|||.+++..
T Consensus        97 --------------~~~~fD~v~~~~-~---~~~~---~---d~~~~l~~~~r~LkPGG~l~i~~  137 (245)
T d1nkva_          97 --------------ANEKCDVAACVG-A---TWIA---G---GFAGAEELLAQSLKPGGIMLIGE  137 (245)
T ss_dssp             --------------CSSCEEEEEEES-C---GGGT---S---SSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             --------------ccCceeEEEEEe-h---hhcc---C---CHHHHHHHHHHHcCcCcEEEEEe
Confidence                          457799998721 0   0011   1   12789999999999999999864

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.02  E-value=2.2e-10  Score=109.82  Aligned_cols=117  Identities=19%  Similarity=0.240  Sum_probs=92.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcC-CCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFG-LEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg-~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      ..+||.+|+|.|+++.+|.+..  ..+|+++|++++.++.|++.+. +....+++++.+|..+.+               
T Consensus        86 G~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~---------------  150 (250)
T d1yb2a1          86 GMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFI---------------  150 (250)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCC---------------
T ss_pred             cCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeeccc---------------
Confidence            4699999999999999999874  5799999999999999998874 234578999999976542               


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHH
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQ  419 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~  419 (478)
                                      .+..||+|++|+.+         |      .+++..+++.|+|||++++.+.+.  +....+++
T Consensus       151 ----------------~~~~fD~V~ld~p~---------p------~~~l~~~~~~LKpGG~lv~~~P~i--~Qv~~~~~  197 (250)
T d1yb2a1         151 ----------------SDQMYDAVIADIPD---------P------WNHVQKIASMMKPGSVATFYLPNF--DQSEKTVL  197 (250)
T ss_dssp             ----------------CSCCEEEEEECCSC---------G------GGSHHHHHHTEEEEEEEEEEESSH--HHHHHHHH
T ss_pred             ----------------ccceeeeeeecCCc---------h------HHHHHHHHHhcCCCceEEEEeCCc--ChHHHHHH
Confidence                            45679999997532         1      357999999999999999877654  44556677


Q ss_pred             HHHHh-cCc
Q 038592          420 EFRDV-FQE  427 (478)
Q Consensus       420 ~l~~v-F~~  427 (478)
                      .|++. |..
T Consensus       198 ~l~~~gf~~  206 (250)
T d1yb2a1         198 SLSASGMHH  206 (250)
T ss_dssp             HSGGGTEEE
T ss_pred             HHHHCCCce
Confidence            77665 543

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.01  E-value=4.2e-10  Score=105.17  Aligned_cols=122  Identities=18%  Similarity=0.262  Sum_probs=88.1

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..|||.||+|+|.++..|.+. ..+|++||+++.+++.|++++....-+++.++++|+.++                   
T Consensus        17 ~~rILDiGcGtG~~~~~la~~-~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~-------------------   76 (234)
T d1xxla_          17 EHRVLDIGAGAGHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL-------------------   76 (234)
T ss_dssp             TCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBC-------------------
T ss_pred             CCEEEEeCCcCcHHHHHHHHh-CCeEEEEeCChhhhhhhhhhhcccccccccccccccccc-------------------
Confidence            469999999999999999876 479999999999999999886533335799999998753                   


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeC-CCCchHHHHHHHHH
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVI-PPNRSFYDMLIQEF  421 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~-~~~~~~~~~v~~~l  421 (478)
                                 +.++++||+|++--    ....+   |   --..+|+.+++.|+|||.+++... .+.....+.+.+.+
T Consensus        77 -----------~~~~~~fD~v~~~~----~l~~~---~---d~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~  135 (234)
T d1xxla_          77 -----------PFPDDSFDIITCRY----AAHHF---S---DVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHL  135 (234)
T ss_dssp             -----------CSCTTCEEEEEEES----CGGGC---S---CHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHH
T ss_pred             -----------cccccccceeeeec----eeecc---c---CHHHHHHHHHHeeCCCcEEEEEEcCCCCCHHHHHHHHHH
Confidence                       12467899999821    11011   1   137899999999999998887443 33334444455555


Q ss_pred             HHhc
Q 038592          422 RDVF  425 (478)
Q Consensus       422 ~~vF  425 (478)
                      ...+
T Consensus       136 ~~~~  139 (234)
T d1xxla_         136 NRLR  139 (234)
T ss_dssp             HHHH
T ss_pred             HhhC
Confidence            4443

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.01  E-value=3.3e-10  Score=105.94  Aligned_cols=114  Identities=16%  Similarity=0.225  Sum_probs=87.9

Q ss_pred             CCCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCC
Q 038592          262 FRPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDS  338 (478)
Q Consensus       262 ~~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~  338 (478)
                      .|++||.||+|.|..+.++.+.+  +.+|++||+++..++.|++++... ..++++++++|+.+.+.++...        
T Consensus        56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~--------  127 (214)
T d2cl5a1          56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKK--------  127 (214)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHH--------
T ss_pred             CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhc--------
Confidence            37899999999999999998875  479999999999999999887432 2468999999999998775432        


Q ss_pred             CCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE-EeCCCC
Q 038592          339 FGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM-NVIPPN  410 (478)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~-N~~~~~  410 (478)
                                      .....||+|++|.+...           ......+..+.++|+|||++++ |+..+.
T Consensus       128 ----------------~~~~~~D~ifiD~~~~~-----------~~~~~~l~~~~~lLkpGGvIv~Ddvl~~g  173 (214)
T d2cl5a1         128 ----------------YDVDTLDMVFLDHWKDR-----------YLPDTLLLEKCGLLRKGTVLLADNVIVPG  173 (214)
T ss_dssp             ----------------SCCCCEEEEEECSCGGG-----------HHHHHHHHHHTTCEEEEEEEEESCCCCCC
T ss_pred             ----------------ccccccceeeecccccc-----------cccHHHHHHHhCccCCCcEEEEeCcCCCC
Confidence                            13467999999854321           1223346667789999999998 765553

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=98.98  E-value=5.9e-10  Score=103.10  Aligned_cols=101  Identities=21%  Similarity=0.331  Sum_probs=79.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.||||+|.++..+.+. +.+|++||+++.+++.|++.+.....++++++++|+.+.                   
T Consensus        16 ~~rVLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l-------------------   75 (231)
T d1vl5a_          16 NEEVLDVATGGGHVANAFAPF-VKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQM-------------------   75 (231)
T ss_dssp             CCEEEEETCTTCHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CC-------------------
T ss_pred             cCEEEEecccCcHHHHHHHHh-CCEEEEEECCHHHHhhhhhcccccccccccccccccccc-------------------
Confidence            479999999999999888876 469999999999999999876444457899999998764                   


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC-ChHHHHHHHHHccCcCcEEEEE
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF-VRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f-~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                 +.++..||+|++--       .+    .++ --..+|+.+++.|+|||.+++.
T Consensus        76 -----------~~~~~~fD~v~~~~-------~l----~~~~d~~~~l~~~~r~LkpgG~l~i~  117 (231)
T d1vl5a_          76 -----------PFTDERFHIVTCRI-------AA----HHFPNPASFVSEAYRVLKKGGQLLLV  117 (231)
T ss_dssp             -----------CSCTTCEEEEEEES-------CG----GGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -----------cccccccccccccc-------cc----cccCCHHHHHHHHHHhcCCCcEEEEE
Confidence                       11467899999831       11    111 2368999999999999988874

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.97  E-value=2.2e-10  Score=107.74  Aligned_cols=108  Identities=19%  Similarity=0.192  Sum_probs=80.6

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      +.+||.||||+|.++..|.+. +.+|++||+++.|++.|++.+.. ...+++++++|+.++                   
T Consensus        38 ~~~vLDiGCG~G~~~~~l~~~-g~~v~GvD~S~~ml~~A~~~~~~-~~~~v~~~~~d~~~~-------------------   96 (246)
T d1y8ca_          38 FDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEMLSEAENKFRS-QGLKPRLACQDISNL-------------------   96 (246)
T ss_dssp             TTEEEEETCTTSTTHHHHGGG-SSEEEEECSCHHHHHHHHHHHHH-TTCCCEEECCCGGGC-------------------
T ss_pred             CCeEEEEeCcCCHHHHHHHHh-CCccEeeccchhhhhhccccccc-cCccceeeccchhhh-------------------
Confidence            579999999999999988875 57999999999999999987642 234699999998765                   


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                  ...++||+|++= ++.  ...+..+ .  --..+|+.++++|+|||+|++.+..+
T Consensus        97 ------------~~~~~fD~i~~~-~~~--~~~~~~~-~--~~~~~l~~~~~~LkpgG~~i~~~~~~  145 (246)
T d1y8ca_          97 ------------NINRKFDLITCC-LDS--TNYIIDS-D--DLKKYFKAVSNHLKEGGVFIFDINSY  145 (246)
T ss_dssp             ------------CCSCCEEEEEEC-TTG--GGGCCSH-H--HHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred             ------------ccccccccccee-eee--eeccCCH-H--HHHHHHHHHHHhCCCCeEEEEEeCCH
Confidence                        135679999971 111  0001000 0  12469999999999999999887644

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.96  E-value=6.6e-10  Score=104.03  Aligned_cols=106  Identities=24%  Similarity=0.262  Sum_probs=80.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      +++||.||||+|.++..|.+. +.+|++||+++.|++.|++.+.. .+.+++++++|+.++                   
T Consensus        42 ~~~iLDiGcGtG~~~~~l~~~-~~~v~gvD~s~~mi~~a~~~~~~-~~~~i~~~~~d~~~l-------------------  100 (251)
T d1wzna1          42 VRRVLDLACGTGIPTLELAER-GYEVVGLDLHEEMLRVARRKAKE-RNLKIEFLQGDVLEI-------------------  100 (251)
T ss_dssp             CCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHH-TTCCCEEEESCGGGC-------------------
T ss_pred             CCEEEEeCCCCCccchhhccc-ceEEEEEeecccccccccccccc-ccccchheehhhhhc-------------------
Confidence            578999999999998888875 57999999999999999988653 234799999998765                   


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIP  408 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~  408 (478)
                                  ...++||+|++= .+.-.  -+   +.. -...+|+.++++|+|||++++.+.+
T Consensus       101 ------------~~~~~fD~I~~~-~~~~~--~~---~~~-~~~~~L~~~~~~LkpgG~lii~~~~  147 (251)
T d1wzna1         101 ------------AFKNEFDAVTMF-FSTIM--YF---DEE-DLRKLFSKVAEALKPGGVFITDFPC  147 (251)
T ss_dssp             ------------CCCSCEEEEEEC-SSGGG--GS---CHH-HHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ------------ccccccchHhhh-hhhhh--cC---ChH-HHHHHHHHHHHHcCCCcEEEEEecc
Confidence                        134579999981 11100  01   001 1257999999999999999987644

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.95  E-value=1.3e-09  Score=105.22  Aligned_cols=122  Identities=20%  Similarity=0.235  Sum_probs=94.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcC---CCCCCCeEEEEchHHHHHHHHHhhhcCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFG---LEDGEFLQVSVGDAIEFLEKLARQIVGKNPD  337 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg---~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~  337 (478)
                      ..+||.+|+|.|+++.+|.+..  +.+|+++|+++++++.|++.+.   ....++++++++|+.+.              
T Consensus        97 G~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~--------------  162 (264)
T d1i9ga_          97 GARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS--------------  162 (264)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC--------------
T ss_pred             CCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccc--------------
Confidence            5799999999999999999874  5799999999999999998652   12346899999998653              


Q ss_pred             CCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHH
Q 038592          338 SFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDML  417 (478)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v  417 (478)
                                      +..+..||+|++|+.+         |      .+++..+++.|+|||.+++.+.+.  +....+
T Consensus       163 ----------------~~~~~~fDaV~ldlp~---------P------~~~l~~~~~~LkpGG~lv~~~P~i--~Qv~~~  209 (264)
T d1i9ga_         163 ----------------ELPDGSVDRAVLDMLA---------P------WEVLDAVSRLLVAGGVLMVYVATV--TQLSRI  209 (264)
T ss_dssp             ----------------CCCTTCEEEEEEESSC---------G------GGGHHHHHHHEEEEEEEEEEESSH--HHHHHH
T ss_pred             ----------------cccCCCcceEEEecCC---------H------HHHHHHHHhccCCCCEEEEEeCcc--ChHHHH
Confidence                            0246789999998743         1      458899999999999999776544  456667


Q ss_pred             HHHHHHh--cCccEEE
Q 038592          418 IQEFRDV--FQELYEI  431 (478)
Q Consensus       418 ~~~l~~v--F~~v~~~  431 (478)
                      +..|+..  |.++..+
T Consensus       210 ~~~l~~~~~f~~i~~~  225 (264)
T d1i9ga_         210 VEALRAKQCWTEPRAW  225 (264)
T ss_dssp             HHHHHHHSSBCCCEEE
T ss_pred             HHHHHHcCCeecceEE
Confidence            7788643  7655443

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.95  E-value=8.2e-10  Score=97.48  Aligned_cols=103  Identities=17%  Similarity=0.160  Sum_probs=80.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.+|+|+|+++......-..+|++||+|+..++.+++.+... ..++++++.+|+.++++.               
T Consensus        15 g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~---------------   79 (152)
T d2esra1          15 GGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDC---------------   79 (152)
T ss_dssp             SCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHH---------------
T ss_pred             CCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccc---------------
Confidence            5799999999999998766553459999999999999999987543 346899999999999865               


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCC-CChHHHHHHHHH--ccCcCcEEEEEe
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVE-FVRKDVLLAARL--ILSDFGIFVMNV  406 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~-f~~~efl~~~~~--~L~~~Gilv~N~  406 (478)
                                    ...+||+|++|            ||-. -.-...+..+..  .|+++|++++-.
T Consensus        80 --------------~~~~fDiIf~D------------PPy~~~~~~~~l~~i~~~~~L~~~g~iiiE~  121 (152)
T d2esra1          80 --------------LTGRFDLVFLD------------PPYAKETIVATIEALAAKNLLSEQVMVVCET  121 (152)
T ss_dssp             --------------BCSCEEEEEEC------------CSSHHHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             --------------cccccceeEec------------hhhccchHHHHHHHHHHCCCcCCCeEEEEEe
Confidence                          45789999997            3311 122456666654  589999998754

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.91  E-value=5.6e-09  Score=102.66  Aligned_cols=131  Identities=18%  Similarity=0.182  Sum_probs=91.1

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC--CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE--DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~--~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      +++||.+++|+|+++..+... +.+|+.||+++..++.|++.+.+.  .+.+++++++|+.+|+++...           
T Consensus       133 ~~rVLdlf~~tG~~sl~aa~~-GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~-----------  200 (309)
T d2igta1         133 PLKVLNLFGYTGVASLVAAAA-GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREER-----------  200 (309)
T ss_dssp             CCEEEEETCTTCHHHHHHHHT-TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHH-----------
T ss_pred             CCeEEEecCCCcHHHHHHHhC-CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhh-----------
Confidence            679999999999998877654 679999999999999999987542  345799999999999988654           


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCC-CC----ChHHHHHHHHHccCcCcE-EEEEeCCCCchHH
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPV-EF----VRKDVLLAARLILSDFGI-FVMNVIPPNRSFY  414 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~-~f----~~~efl~~~~~~L~~~Gi-lv~N~~~~~~~~~  414 (478)
                                     ...+||+||+|.-.-    +.. +.. .+    +-...++.++.+|+|+|. ++++..+..-+ .
T Consensus       201 ---------------~~~~fD~IilDPP~f----~~~-~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s~~~s-~  259 (309)
T d2igta1         201 ---------------RGSTYDIILTDPPKF----GRG-THGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRAS-F  259 (309)
T ss_dssp             ---------------HTCCBSEEEECCCSE----EEC-TTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSC-H
T ss_pred             ---------------cCCCCCEEEECCCcc----ccc-ccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCCCCCC-H
Confidence                           367899999984210    000 000 11    124466778899999885 45565554222 2


Q ss_pred             HHHHHHHHHhcC
Q 038592          415 DMLIQEFRDVFQ  426 (478)
Q Consensus       415 ~~v~~~l~~vF~  426 (478)
                      ..+.+.+++.+.
T Consensus       260 ~~~~~~~~~~~~  271 (309)
T d2igta1         260 YSMHELMRETMR  271 (309)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHH
Confidence            233444555554

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=98.88  E-value=7e-09  Score=102.38  Aligned_cols=131  Identities=15%  Similarity=0.147  Sum_probs=93.6

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC--CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE--DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~--~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      .++||.+.+|+|+.+..+...-..+|++||+++..+++|++.+...  ...+++++.+|+.+|++....           
T Consensus       145 g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~-----------  213 (317)
T d2b78a2         145 GKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARR-----------  213 (317)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHH-----------
T ss_pred             CCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHh-----------
Confidence            4799999999999987665543458999999999999999988432  235799999999999988654           


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCC-----hHHHHHHHHHccCcCcEEEEEeCCCCchHHH
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFV-----RKDVLLAARLILSDFGIFVMNVIPPNRSFYD  415 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~-----~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~  415 (478)
                                     .+.+||+||+|..+-...      +....     -.+.++.+.++|+|||++++-..++.-+ .+
T Consensus       214 ---------------~~~~fD~Ii~DPP~f~~~------~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~-~~  271 (317)
T d2b78a2         214 ---------------HHLTYDIIIIDPPSFARN------KKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMT-VS  271 (317)
T ss_dssp             ---------------TTCCEEEEEECCCCC-----------CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC-HH
T ss_pred             ---------------hcCCCCEEEEcChhhccc------hhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCC-HH
Confidence                           467899999985321100      11111     1457888889999999999866555332 23


Q ss_pred             HHHHHHHHhcC
Q 038592          416 MLIQEFRDVFQ  426 (478)
Q Consensus       416 ~v~~~l~~vF~  426 (478)
                      .+...+.+.|.
T Consensus       272 ~f~~~v~~a~~  282 (317)
T d2b78a2         272 QFKKQIEKGFG  282 (317)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
Confidence            34455555554

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=98.88  E-value=1.6e-09  Score=104.08  Aligned_cols=104  Identities=21%  Similarity=0.311  Sum_probs=81.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||||.|.++.+|.+.++.+|++||++|.+++.|++..... -.++++++.+|+.+.                  
T Consensus        68 ~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l------------------  129 (282)
T d2o57a1          68 QAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI------------------  129 (282)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC------------------
T ss_pred             CCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccccc------------------
Confidence            5799999999999999998877889999999999999999875321 246899999998754                  


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                  +.++.+||+|+.-    .....+   |   --..+|+.+++.|+|||.|++..
T Consensus       130 ------------~~~~~sfD~V~~~----~~l~h~---~---d~~~~l~~~~~~LkpgG~l~~~~  172 (282)
T d2o57a1         130 ------------PCEDNSYDFIWSQ----DAFLHS---P---DKLKVFQECARVLKPRGVMAITD  172 (282)
T ss_dssp             ------------SSCTTCEEEEEEE----SCGGGC---S---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ------------cccccccchhhcc----chhhhc---c---CHHHHHHHHHHhcCCCcEEEEEE
Confidence                        1246789999872    111111   1   13679999999999999998854

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.88  E-value=2e-09  Score=98.09  Aligned_cols=105  Identities=13%  Similarity=0.153  Sum_probs=81.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      +.+||.||||.|..+.++.+. +.+|++||+++.+++.|++......-+++++.+.|..++-                  
T Consensus        31 ~grvLDiGcG~G~~~~~la~~-g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~------------------   91 (198)
T d2i6ga1          31 PGRTLDLGCGNGRNSLYLAAN-GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLT------------------   91 (198)
T ss_dssp             SCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCC------------------
T ss_pred             CCcEEEECCCCCHHHHHHHHH-hhhhccccCcHHHHHHHHHHhhhccccchhhhheeccccc------------------
Confidence            569999999999999999876 6799999999999999998775444467899999977651                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVI  407 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~  407 (478)
                                   .+.+||+|+.-..    .  ...|+.  .-..+++.+++.|+|||++++...
T Consensus        92 -------------~~~~fD~I~~~~~----~--~~~~~~--~~~~~l~~~~~~L~pgG~~~~~~~  135 (198)
T d2i6ga1          92 -------------FDGEYDFILSTVV----M--MFLEAQ--TIPGLIANMQRCTKPGGYNLIVAA  135 (198)
T ss_dssp             -------------CCCCEEEEEEESC----G--GGSCTT--HHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             -------------ccccccEEEEeee----e--ecCCHH--HHHHHHHHHHHHcCCCcEEEEEEe
Confidence                         4578999998321    1  112332  236799999999999999988654

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.88  E-value=5.9e-09  Score=103.04  Aligned_cols=131  Identities=20%  Similarity=0.202  Sum_probs=93.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCC-CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLED-GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~-d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.+|+|+|+.+.++......+|++||+++..++.|++.+.... .++++++++|+.+++.....            
T Consensus       146 g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~------------  213 (324)
T d2as0a2         146 GDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQK------------  213 (324)
T ss_dssp             TCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHH------------
T ss_pred             CCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHh------------
Confidence            46999999999999988876644699999999999999998774332 35899999999999987654            


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCC-----hHHHHHHHHHccCcCcEEEEEeCCCCchHHHH
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFV-----RKDVLLAARLILSDFGIFVMNVIPPNRSFYDM  416 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~-----~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~  416 (478)
                                    .+.+||+|++|....-.      ......     -.+++..+.++|+|||+|++-..+..-+ .+.
T Consensus       214 --------------~~~~fD~Vi~DpP~~~~------~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~-~~~  272 (324)
T d2as0a2         214 --------------KGEKFDIVVLDPPAFVQ------HEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVD-LQM  272 (324)
T ss_dssp             --------------TTCCEEEEEECCCCSCS------SGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSC-HHH
T ss_pred             --------------ccCCCCchhcCCccccC------CHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCC-HHH
Confidence                          46789999998532110      011111     1457788889999999999866555322 233


Q ss_pred             HHHHHHHhcC
Q 038592          417 LIQEFRDVFQ  426 (478)
Q Consensus       417 v~~~l~~vF~  426 (478)
                      ..+.+.+.+.
T Consensus       273 f~~~v~~a~~  282 (324)
T d2as0a2         273 FKDMIIAAGA  282 (324)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            3444444443

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=9.2e-10  Score=102.20  Aligned_cols=104  Identities=24%  Similarity=0.215  Sum_probs=80.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.||||.|.++..+......+|++||+++.+++.|++.+.....++++++++|+.++-                  
T Consensus        61 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~------------------  122 (222)
T d2ex4a1          61 TSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFT------------------  122 (222)
T ss_dssp             CSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCC------------------
T ss_pred             CCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccccccccccccccccc------------------
Confidence            57899999999999988765555799999999999999999886544467899999998762                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                  ....+||+|++--       .+..-|.. .-.++++.+++.|+|+|.+++
T Consensus       123 ------------~~~~~fD~I~~~~-------~l~h~~~~-~~~~~l~~i~~~Lk~~G~~~i  164 (222)
T d2ex4a1         123 ------------PEPDSYDVIWIQW-------VIGHLTDQ-HLAEFLRRCKGSLRPNGIIVI  164 (222)
T ss_dssp             ------------CCSSCEEEEEEES-------CGGGSCHH-HHHHHHHHHHHHEEEEEEEEE
T ss_pred             ------------ccccccccccccc-------ccccchhh-hhhhHHHHHHHhcCCcceEEE
Confidence                        1467899999831       11111110 014799999999999999887

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.87  E-value=5.3e-09  Score=96.98  Aligned_cols=130  Identities=15%  Similarity=0.238  Sum_probs=93.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhh-CCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQ-LDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~-~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      .+-||.||+|.|.....+++. ++..+++||+++.++..|.+...-..-++++++.+|+..++...              
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~--------------   95 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVF--------------   95 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHC--------------
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhccc--------------
Confidence            467999999999988777776 57999999999999999887654333468999999999876431              


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHH
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEF  421 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l  421 (478)
                                    .+..+|.|++--..+.+..-.  ....+++++|++.+++.|+|||+|.+-  +.+....+.++..+
T Consensus        96 --------------~~~~~d~v~i~fp~P~~k~~h--~k~Rl~~~~~l~~~~r~LkpgG~l~i~--TD~~~y~~~~~~~~  157 (204)
T d2fcaa1          96 --------------EPGEVKRVYLNFSDPWPKKRH--EKRRLTYSHFLKKYEEVMGKGGSIHFK--TDNRGLFEYSLKSF  157 (204)
T ss_dssp             --------------CTTSCCEEEEESCCCCCSGGG--GGGSTTSHHHHHHHHHHHTTSCEEEEE--ESCHHHHHHHHHHH
T ss_pred             --------------Cchhhhccccccccccchhhh--cchhhhHHHHHHHHHHhCCCCcEEEEE--ECChHHHHHHHHHH
Confidence                          466799888843222111000  012367899999999999999998764  34455556666666


Q ss_pred             HHh
Q 038592          422 RDV  424 (478)
Q Consensus       422 ~~v  424 (478)
                      .+.
T Consensus       158 ~~~  160 (204)
T d2fcaa1         158 SEY  160 (204)
T ss_dssp             HHH
T ss_pred             HHC
Confidence            553

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=98.86  E-value=2.5e-09  Score=103.20  Aligned_cols=119  Identities=18%  Similarity=0.208  Sum_probs=92.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCC-CCCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGL-EDGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~-~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      ..+||.+|+|.|+++.+|.+..  +.+|+++|++|++++.|++.+.- ....++.+..+|....                
T Consensus       104 G~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~----------------  167 (266)
T d1o54a_         104 GDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG----------------  167 (266)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC----------------
T ss_pred             CCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccc----------------
Confidence            5799999999999999998875  47999999999999999987642 2246788998885322                


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHH
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQ  419 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~  419 (478)
                                     .....||.|++|+.+         |      +++++.+++.|+|||.+++.+.+.  +....+++
T Consensus       168 ---------------~~~~~~D~V~~d~p~---------p------~~~l~~~~~~LKpGG~lv~~~P~~--~Qv~~~~~  215 (266)
T d1o54a_         168 ---------------FDEKDVDALFLDVPD---------P------WNYIDKCWEALKGGGRFATVCPTT--NQVQETLK  215 (266)
T ss_dssp             ---------------CSCCSEEEEEECCSC---------G------GGTHHHHHHHEEEEEEEEEEESSH--HHHHHHHH
T ss_pred             ---------------ccccceeeeEecCCC---------H------HHHHHHHHhhcCCCCEEEEEeCcc--cHHHHHHH
Confidence                           145679999998632         2      458999999999999999887654  44566777


Q ss_pred             HHHHh-cCccE
Q 038592          420 EFRDV-FQELY  429 (478)
Q Consensus       420 ~l~~v-F~~v~  429 (478)
                      .|++. |..+.
T Consensus       216 ~l~~~gF~~i~  226 (266)
T d1o54a_         216 KLQELPFIRIE  226 (266)
T ss_dssp             HHHHSSEEEEE
T ss_pred             HHHHCCceeEE
Confidence            88765 65433

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=98.86  E-value=5.8e-09  Score=99.91  Aligned_cols=131  Identities=23%  Similarity=0.243  Sum_probs=91.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.+|+|+|.++..+.+ ++.+|++||+||.+++.|++..... +-+.+++++|..+.+                  
T Consensus       121 g~~VLDiGcGsG~l~i~aa~-~g~~V~gvDis~~av~~A~~na~~n-~~~~~~~~~d~~~~~------------------  180 (254)
T d2nxca1         121 GDKVLDLGTGSGVLAIAAEK-LGGKALGVDIDPMVLPQAEANAKRN-GVRPRFLEGSLEAAL------------------  180 (254)
T ss_dssp             TCEEEEETCTTSHHHHHHHH-TTCEEEEEESCGGGHHHHHHHHHHT-TCCCEEEESCHHHHG------------------
T ss_pred             cCEEEEcccchhHHHHHHHh-cCCEEEEEECChHHHHHHHHHHHHc-CCceeEEeccccccc------------------
Confidence            57999999999999987775 4689999999999999999875422 224678999987653                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHHH
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEFR  422 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l~  422 (478)
                                   ...+||+|+..+...             .-.+++..++++|+|||.+++.-.-.  +..+.+.+.++
T Consensus       181 -------------~~~~fD~V~ani~~~-------------~l~~l~~~~~~~LkpGG~lilSgil~--~~~~~v~~~~~  232 (254)
T d2nxca1         181 -------------PFGPFDLLVANLYAE-------------LHAALAPRYREALVPGGRALLTGILK--DRAPLVREAMA  232 (254)
T ss_dssp             -------------GGCCEEEEEEECCHH-------------HHHHHHHHHHHHEEEEEEEEEEEEEG--GGHHHHHHHHH
T ss_pred             -------------cccccchhhhccccc-------------cHHHHHHHHHHhcCCCcEEEEEecch--hhHHHHHHHHH
Confidence                         346799999864211             13678899999999999999742211  22345566666


Q ss_pred             Hh-cCccEEEeecccceEEEEEE
Q 038592          423 DV-FQELYEIDVGNEENFVLIAT  444 (478)
Q Consensus       423 ~v-F~~v~~~~v~~~~N~Vl~a~  444 (478)
                      +. |..+...   ...+|+.+..
T Consensus       233 ~~Gf~~~~~~---~~~~Wv~l~~  252 (254)
T d2nxca1         233 GAGFRPLEEA---AEGEWVLLAY  252 (254)
T ss_dssp             HTTCEEEEEE---EETTEEEEEE
T ss_pred             HCCCEEEEEE---EECCEEEEEE
Confidence            65 4333222   2346776654

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=4.5e-09  Score=104.11  Aligned_cols=117  Identities=19%  Similarity=0.219  Sum_probs=87.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcC----------C-CCCCCeEEEEchHHHHHHHHHh
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFG----------L-EDGEFLQVSVGDAIEFLEKLAR  329 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg----------~-~~d~rl~v~v~Dg~~~l~~~~~  329 (478)
                      ..+||.+|+|.|+++.+|.+..  +.+|+++|+++++++.|++.+.          + ....++.++++|...+....  
T Consensus        99 G~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~~--  176 (324)
T d2b25a1          99 GDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDI--  176 (324)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-----
T ss_pred             CCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhccccc--
Confidence            5799999999999999999874  5799999999999999998652          1 12468999999976553221  


Q ss_pred             hhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          330 QIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                                ....||+||+|+-+          |     .+++..+++.|+|||.|++.+.+-
T Consensus       177 --------------------------~~~~fD~V~LD~p~----------P-----~~~l~~~~~~LKpGG~lv~~~P~i  215 (324)
T d2b25a1         177 --------------------------KSLTFDAVALDMLN----------P-----HVTLPVFYPHLKHGGVCAVYVVNI  215 (324)
T ss_dssp             ------------------------------EEEEEECSSS----------T-----TTTHHHHGGGEEEEEEEEEEESSH
T ss_pred             --------------------------CCCCcceEeecCcC----------H-----HHHHHHHHHhccCCCEEEEEeCCH
Confidence                                      34579999998632          1     247889999999999999876544


Q ss_pred             CchHHHHHHHHHHHh
Q 038592          410 NRSFYDMLIQEFRDV  424 (478)
Q Consensus       410 ~~~~~~~v~~~l~~v  424 (478)
                        +....++..|++.
T Consensus       216 --~Qv~~~~~~l~~~  228 (324)
T d2b25a1         216 --TQVIELLDGIRTC  228 (324)
T ss_dssp             --HHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHc
Confidence              4455677777754

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.83  E-value=2e-09  Score=98.47  Aligned_cols=105  Identities=30%  Similarity=0.442  Sum_probs=79.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.||||+|.++..+.+. +.+|+++|+++.+++.|++.+.-. +..+..+.+|+.+.-                  
T Consensus        38 ~~~ILDiGcG~G~~~~~la~~-~~~v~giD~S~~~i~~ak~~~~~~-~~~~~~~~~d~~~l~------------------   97 (226)
T d1ve3a1          38 RGKVLDLACGVGGFSFLLEDY-GFEVVGVDISEDMIRKAREYAKSR-ESNVEFIVGDARKLS------------------   97 (226)
T ss_dssp             CCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHT-TCCCEEEECCTTSCC------------------
T ss_pred             CCEEEEECCCcchhhhhHhhh-hcccccccccccchhhhhhhhccc-ccccccccccccccc------------------
Confidence            469999999999999988875 679999999999999999876422 346788888887641                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCC-CCCCCChHHHHHHHHHccCcCcEEEEEeCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSA-PPVEFVRKDVLLAARLILSDFGIFVMNVIP  408 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~-Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~  408 (478)
                                  ..++.||+|++-  .     .+.. |+..  -..+|+.+.+.|+|||.+++...+
T Consensus        98 ------------~~~~~fD~I~~~--~-----~l~~~~~~d--~~~~l~~i~~~LkpgG~lii~~~~  143 (226)
T d1ve3a1          98 ------------FEDKTFDYVIFI--D-----SIVHFEPLE--LNQVFKEVRRVLKPSGKFIMYFTD  143 (226)
T ss_dssp             ------------SCTTCEEEEEEE--S-----CGGGCCHHH--HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ------------ccCcCceEEEEe--c-----chhhCChhH--HHHHHHHHHHHcCcCcEEEEEEcC
Confidence                        256789999982  1     1111 1111  246899999999999999887654

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=98.82  E-value=1.1e-08  Score=100.87  Aligned_cols=114  Identities=24%  Similarity=0.220  Sum_probs=87.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      .++||.+++|+|+.+..+.. ...+|++||+++..++.|++.+....-.+++++.+|+.++++....             
T Consensus       146 g~rVLDl~~gtG~~s~~~a~-g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~-------------  211 (318)
T d1wxxa2         146 GERALDVFSYAGGFALHLAL-GFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEK-------------  211 (318)
T ss_dssp             EEEEEEETCTTTHHHHHHHH-HEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHH-------------
T ss_pred             CCeeeccCCCCcHHHHHHHh-cCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHh-------------
Confidence            46999999999999987764 2569999999999999999887543324689999999999887654             


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCC-----hHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFV-----RKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~-----~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                   ...+||+|++|....-.      ......     -.+++..+.++|+|||++++...+.
T Consensus       212 -------------~~~~fD~Vi~DpP~~~~------~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~  264 (318)
T d1wxxa2         212 -------------EGERFDLVVLDPPAFAK------GKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH  264 (318)
T ss_dssp             -------------TTCCEEEEEECCCCSCC------STTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             -------------hhcCCCEEEEcCCcccc------chHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence                         46789999998633211      112211     1367888899999999999866554

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=98.82  E-value=1.6e-09  Score=96.68  Aligned_cols=123  Identities=15%  Similarity=0.151  Sum_probs=86.2

Q ss_pred             chhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-------
Q 038592          236 VHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-------  308 (478)
Q Consensus       236 ~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-------  308 (478)
                      ..++++...+.+.+.           ++.+||++|||.|..+.+|.++ +.+|++||+++.+++.|++..+..       
T Consensus         5 ~~~~~~~~~~~l~~~-----------~~~rvLd~GCG~G~~a~~la~~-G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~   72 (201)
T d1pjza_           5 VNKDLQQYWSSLNVV-----------PGARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQG   72 (201)
T ss_dssp             STHHHHHHHHHHCCC-----------TTCEEEETTTCCSHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHCSCSEEEEET
T ss_pred             HHHHHHHHHHHcCCC-----------CCCEEEEecCcCCHHHHHHHHc-CCceEeecccHHHHHHHHHHhccccchhhhh
Confidence            356666666554322           2579999999999999999986 899999999999999999876432       


Q ss_pred             -----CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC
Q 038592          309 -----DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF  383 (478)
Q Consensus       309 -----~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f  383 (478)
                           .....+++.+|..+.-..                             ....||+|+.-.       .+...+.. 
T Consensus        73 ~~~~~~~~~~~~~~~d~~~l~~~-----------------------------~~~~~D~i~~~~-------~l~~l~~~-  115 (201)
T d1pjza_          73 DFKVYAAPGIEIWCGDFFALTAR-----------------------------DIGHCAAFYDRA-------AMIALPAD-  115 (201)
T ss_dssp             TEEEEECSSSEEEEECCSSSTHH-----------------------------HHHSEEEEEEES-------CGGGSCHH-
T ss_pred             hhhhccccccceecccccccccc-----------------------------cccceeEEEEEe-------eeEecchh-
Confidence                 134567777777664222                             234699998721       11111111 


Q ss_pred             ChHHHHHHHHHccCcCcEEEEEeC
Q 038592          384 VRKDVLLAARLILSDFGIFVMNVI  407 (478)
Q Consensus       384 ~~~efl~~~~~~L~~~Gilv~N~~  407 (478)
                      ....+++.+++.|+|||.+++...
T Consensus       116 ~~~~~~~~i~~~LkpgG~l~l~~~  139 (201)
T d1pjza_         116 MRERYVQHLEALMPQACSGLLITL  139 (201)
T ss_dssp             HHHHHHHHHHHHSCSEEEEEEEEE
T ss_pred             hhHHHHHHHHHhcCCCcEEEEEEc
Confidence            236799999999999998876543

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=98.80  E-value=9.8e-09  Score=95.13  Aligned_cols=103  Identities=15%  Similarity=0.212  Sum_probs=78.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhh---CCCEEEEEECChHHHHHHHHhcC-CCCCCCeEEEEchHHHHHHHHHhhhcCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQ---LDFEVVGVEMDEVVLRVARQYFG-LEDGEFLQVSVGDAIEFLEKLARQIVGKNPDS  338 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~---~~~~V~~VEiDp~Vl~vA~~~Fg-~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~  338 (478)
                      ..+||.||||+|.++..|.++   ++.+|++||+++.|++.|++... .....++++..+|..++               
T Consensus        40 ~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~---------------  104 (225)
T d1im8a_          40 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV---------------  104 (225)
T ss_dssp             TCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTC---------------
T ss_pred             CCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcc---------------
Confidence            468999999999999888875   35799999999999999998764 23456788888887765               


Q ss_pred             CCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592          339 FGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                       +...+|+|++-.  .-    ...++.  -...+|+++++.|+|||.|++-
T Consensus       105 -----------------~~~~~d~i~~~~--~l----~~~~~~--d~~~~l~~i~~~LkpgG~li~~  146 (225)
T d1im8a_         105 -----------------EIKNASMVILNF--TL----QFLPPE--DRIALLTKIYEGLNPNGVLVLS  146 (225)
T ss_dssp             -----------------CCCSEEEEEEES--CG----GGSCGG--GHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -----------------ccccceeeEEee--ec----cccChh--hHHHHHHHHHHhCCCCceeecc
Confidence                             456789888731  10    011122  2358999999999999999874

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=98.79  E-value=5.4e-09  Score=97.19  Aligned_cols=101  Identities=14%  Similarity=0.091  Sum_probs=78.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      +.+||.||+|+|.++..+.+. +.+|++||+++++++.|++.+.    .+++++.+|..++                   
T Consensus        21 ~~~VLDiGcG~G~~~~~l~~~-g~~v~giD~s~~~i~~a~~~~~----~~~~~~~~~~~~~-------------------   76 (225)
T d2p7ia1          21 PGNLLELGSFKGDFTSRLQEH-FNDITCVEASEEAISHAQGRLK----DGITYIHSRFEDA-------------------   76 (225)
T ss_dssp             SSCEEEESCTTSHHHHHHTTT-CSCEEEEESCHHHHHHHHHHSC----SCEEEEESCGGGC-------------------
T ss_pred             CCcEEEEeCCCcHHHHHHHHc-CCeEEEEeCcHHHhhhhhcccc----ccccccccccccc-------------------
Confidence            568999999999999988765 5689999999999999999864    3689999987654                   


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHH-HccCcCcEEEEEeCCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAAR-LILSDFGIFVMNVIPP  409 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~-~~L~~~Gilv~N~~~~  409 (478)
                                  ..+++||+|++-    +....+.      -...++..++ +.|+|||.+++.+...
T Consensus        77 ------------~~~~~fD~I~~~----~vleh~~------d~~~~l~~i~~~~Lk~gG~l~i~~pn~  122 (225)
T d2p7ia1          77 ------------QLPRRYDNIVLT----HVLEHID------DPVALLKRINDDWLAEGGRLFLVCPNA  122 (225)
T ss_dssp             ------------CCSSCEEEEEEE----SCGGGCS------SHHHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred             ------------cccccccccccc----ceeEecC------CHHHHHHHHHHHhcCCCceEEEEeCCc
Confidence                        135689999972    1111111      2377888987 6899999999977554

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.75  E-value=5.2e-09  Score=97.88  Aligned_cols=101  Identities=20%  Similarity=0.208  Sum_probs=77.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.||+|+|+++..|.+..+.+|++||+|+.+++.|++.+.-..-.++.++.+|+.+-.                  
T Consensus        79 g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~------------------  140 (215)
T d1jg1a_          79 GMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGF------------------  140 (215)
T ss_dssp             TCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC------------------
T ss_pred             cceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCC------------------
Confidence            46999999999999988887667889999999999999997764333468999999997532                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                  ....+||+|++..       ++...|.         .+.+.|++||.+++-+...
T Consensus       141 ------------~~~~pfD~Iiv~~-------a~~~ip~---------~l~~qL~~gGrLv~pv~~~  179 (215)
T d1jg1a_         141 ------------PPKAPYDVIIVTA-------GAPKIPE---------PLIEQLKIGGKLIIPVGSY  179 (215)
T ss_dssp             ------------GGGCCEEEEEECS-------BBSSCCH---------HHHHTEEEEEEEEEEECSS
T ss_pred             ------------cccCcceeEEeec-------ccccCCH---------HHHHhcCCCCEEEEEEccC
Confidence                        1356799999943       2222232         3567899999999876544

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.74  E-value=1.9e-08  Score=91.45  Aligned_cols=107  Identities=21%  Similarity=0.212  Sum_probs=83.1

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC-CCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL-EDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~-~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.+++|+|+++......-..+|+.||.|+..++++++.+.. ....+++++.+|+.+++++...            
T Consensus        42 ~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~------------  109 (182)
T d2fhpa1          42 GGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYE------------  109 (182)
T ss_dssp             SCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHH------------
T ss_pred             CCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcc------------
Confidence            479999999999999877765446999999999999999988742 2345799999999999987543            


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCC-CChHHHHHHHHH--ccCcCcEEEEEeC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVE-FVRKDVLLAARL--ILSDFGIFVMNVI  407 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~-f~~~efl~~~~~--~L~~~Gilv~N~~  407 (478)
                                    ...+||+|++|            ||-. -.-.+.+..+.+  .|+++|++++-..
T Consensus       110 --------------~~~~fDlIflD------------PPY~~~~~~~~l~~i~~~~~L~~~giIi~E~~  152 (182)
T d2fhpa1         110 --------------EKLQFDLVLLD------------PPYAKQEIVSQLEKMLERQLLTNEAVIVCETD  152 (182)
T ss_dssp             --------------TTCCEEEEEEC------------CCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             --------------cCCCcceEEec------------hhhhhhHHHHHHHHHHHCCCCCCCEEEEEEcC
Confidence                          45689999997            3421 122556777654  6999999997554

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=98.74  E-value=2.9e-08  Score=95.99  Aligned_cols=148  Identities=16%  Similarity=0.175  Sum_probs=102.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      +.+||.+|+|+|+++..|.... +.+|+++|+++..+++|++......-.+++++.+|..+.+                 
T Consensus       109 ~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~-----------------  171 (274)
T d2b3ta1         109 PCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSAL-----------------  171 (274)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGG-----------------
T ss_pred             ccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeeccccccc-----------------
Confidence            6799999999999999888765 7899999999999999997653211247999999987653                 


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCC---CCC----CCCCCCCCCCCCCh--------HHHHHHHHHccCcCcEEEEEe
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLD---SGD----ARNGTSAPPVEFVR--------KDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~---s~d----~~~g~s~Pp~~f~~--------~efl~~~~~~L~~~Gilv~N~  406 (478)
                                    .+.+||+|+.+..   ..+    +..--..|...++.        ..++..+.+.|+++|.+++-+
T Consensus       172 --------------~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEi  237 (274)
T d2b3ta1         172 --------------AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH  237 (274)
T ss_dssp             --------------TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             --------------CCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEE
Confidence                          3568999999631   110    00001234444432        458888899999999999977


Q ss_pred             CCCCchHHHHHHHHHHHh-cCccEEEeecccceEEEEEE
Q 038592          407 IPPNRSFYDMLIQEFRDV-FQELYEIDVGNEENFVLIAT  444 (478)
Q Consensus       407 ~~~~~~~~~~v~~~l~~v-F~~v~~~~v~~~~N~Vl~a~  444 (478)
                      .....   +.+.+.+++. |..+..++=-.+.+++++|.
T Consensus       238 g~~q~---~~v~~~l~~~gf~~i~~~kDl~g~~R~v~~r  273 (274)
T d2b3ta1         238 GWQQG---EAVRQAFILAGYHDVETCRDYGDNERVTLGR  273 (274)
T ss_dssp             CSSCH---HHHHHHHHHTTCTTCCEEECTTSSEEEEEEE
T ss_pred             CchHH---HHHHHHHHHCCCCeEEEEECCCCCceEEEEe
Confidence            65433   3445555555 77665554334467777764

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=98.74  E-value=6.7e-09  Score=100.18  Aligned_cols=103  Identities=20%  Similarity=0.186  Sum_probs=78.9

Q ss_pred             CCCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          262 FRPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       262 ~~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      +|.+||.||+|.|.++..|.+..  +.+|++||+++.+++.|++.+... ..+++++++|+.++                
T Consensus        27 ~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~-~~~~~f~~~d~~~~----------------   89 (281)
T d2gh1a1          27 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL-PYDSEFLEGDATEI----------------   89 (281)
T ss_dssp             SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSS-SSEEEEEESCTTTC----------------
T ss_pred             CcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccc-cccccccccccccc----------------
Confidence            47899999999999999998875  479999999999999999887542 23688899997653                


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                     ....+||+|++--    ....+.      --..+|+.+++.|+|||.+++-.
T Consensus        90 ---------------~~~~~fD~v~~~~----~l~~~~------d~~~~l~~~~~~LkpgG~lii~~  131 (281)
T d2gh1a1          90 ---------------ELNDKYDIAICHA----FLLHMT------TPETMLQKMIHSVKKGGKIICFE  131 (281)
T ss_dssp             ---------------CCSSCEEEEEEES----CGGGCS------SHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ---------------cccCCceEEEEeh----hhhcCC------CHHHHHHHHHHHcCcCcEEEEEE
Confidence                           1245799999831    110111      12679999999999999988744

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=98.74  E-value=1.4e-08  Score=96.78  Aligned_cols=104  Identities=16%  Similarity=0.139  Sum_probs=79.7

Q ss_pred             CCCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          262 FRPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       262 ~~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ...+||.+|+|.|.++..|......+|++||+++.+++.|++.+.  ..++++++++|..++-                 
T Consensus        93 ~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~--~~~~~~~~~~d~~~~~-----------------  153 (254)
T d1xtpa_          93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELA--GMPVGKFILASMETAT-----------------  153 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTT--TSSEEEEEESCGGGCC-----------------
T ss_pred             CCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccc--ccccceeEEccccccc-----------------
Confidence            367999999999998877664434599999999999999999875  3456899999987661                 


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCCh---HHHHHHHHHccCcCcEEEE--EeCC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVR---KDVLLAARLILSDFGIFVM--NVIP  408 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~---~efl~~~~~~L~~~Gilv~--N~~~  408 (478)
                                   ..+.+||+|++--    .       -.++.+   .+||+.+++.|+|||.+++  |+..
T Consensus       154 -------------~~~~~fD~I~~~~----v-------l~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~  201 (254)
T d1xtpa_         154 -------------LPPNTYDLIVIQW----T-------AIYLTDADFVKFFKHCQQALTPNGYIFFKENCST  201 (254)
T ss_dssp             -------------CCSSCEEEEEEES----C-------GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC-
T ss_pred             -------------cCCCccceEEeec----c-------ccccchhhhHHHHHHHHHhcCCCcEEEEEecCCC
Confidence                         1467899999831    1       122322   4789999999999999998  5443

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.74  E-value=1.2e-08  Score=92.62  Aligned_cols=103  Identities=17%  Similarity=0.168  Sum_probs=80.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.+++|+|+++.....+-..+|+.||+|+..++++++.+......+.+++.+|+.+|+..                
T Consensus        44 ~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~----------------  107 (183)
T d2fpoa1          44 DAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQ----------------  107 (183)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSS----------------
T ss_pred             hhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccc----------------
Confidence            4699999999999998766654469999999999999999876533345689999999999853                


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCC-CCCChHHHHHHHHH--ccCcCcEEEEEe
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPP-VEFVRKDVLLAARL--ILSDFGIFVMNV  406 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp-~~f~~~efl~~~~~--~L~~~Gilv~N~  406 (478)
                                   ...+||+|++|.            | ..-.-.+.+..+.+  .|+++|++++-.
T Consensus       108 -------------~~~~fDlIf~DP------------PY~~~~~~~~l~~l~~~~~L~~~~iIiiE~  149 (183)
T d2fpoa1         108 -------------KGTPHNIVFVDP------------PFRRGLLEETINLLEDNGWLADEALIYVES  149 (183)
T ss_dssp             -------------CCCCEEEEEECC------------SSSTTTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             -------------cccccCEEEEcC------------ccccchHHHHHHHHHHCCCCCCCeEEEEEe
Confidence                         467899999972            3 11234667777765  599999999754

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.72  E-value=5.3e-09  Score=97.31  Aligned_cols=98  Identities=19%  Similarity=0.151  Sum_probs=75.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.||+|+|.++..|.+..  ..+|+++|+++++++.|++.+....-.++.++++|+.+...               
T Consensus        76 g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~---------------  140 (213)
T d1dl5a1          76 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP---------------  140 (213)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG---------------
T ss_pred             cceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccc---------------
Confidence            5699999999999999888764  47999999999999999998754445678899999876421               


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                     ...+||+|+++..-           .++     .+.+.+.|+|||.+++-+
T Consensus       141 ---------------~~~~fD~I~~~~~~-----------~~~-----p~~l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         141 ---------------EFSPYDVIFVTVGV-----------DEV-----PETWFTQLKEGGRVIVPI  175 (213)
T ss_dssp             ---------------GGCCEEEEEECSBB-----------SCC-----CHHHHHHEEEEEEEEEEB
T ss_pred             ---------------cccchhhhhhhccH-----------HHh-----HHHHHHhcCCCcEEEEEE
Confidence                           24579999995311           111     234677899999998744

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=98.72  E-value=1.2e-08  Score=94.26  Aligned_cols=100  Identities=23%  Similarity=0.258  Sum_probs=74.6

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      +.+||.||||+|.++..|.+. +.+|++||+++.+++.|++...    +  .++.+|+.+.                   
T Consensus        43 ~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~l~~a~~~~~----~--~~~~~~~~~l-------------------   96 (246)
T d2avna1          43 PCRVLDLGGGTGKWSLFLQER-GFEVVLVDPSKEMLEVAREKGV----K--NVVEAKAEDL-------------------   96 (246)
T ss_dssp             CCEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHHTC----S--CEEECCTTSC-------------------
T ss_pred             CCEEEEECCCCchhccccccc-ceEEEEeecccccccccccccc----c--cccccccccc-------------------
Confidence            579999999999999999875 6799999999999999998743    1  2566666542                   


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIP  408 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~  408 (478)
                                 +.++++||+|++-..   ....+  |    -...+|+.+.+.|+|||++++.+.+
T Consensus        97 -----------~~~~~~fD~ii~~~~---~~~~~--~----d~~~~l~~i~r~Lk~gG~~ii~~~~  142 (246)
T d2avna1          97 -----------PFPSGAFEAVLALGD---VLSYV--E----NKDKAFSEIRRVLVPDGLLIATVDN  142 (246)
T ss_dssp             -----------CSCTTCEEEEEECSS---HHHHC--S----CHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             -----------ccccccccceeeecc---hhhhh--h----hHHHHHHHHHhhcCcCcEEEEEECC
Confidence                       124678999986110   00001  1    1367999999999999999998754

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.70  E-value=6.3e-08  Score=91.03  Aligned_cols=143  Identities=17%  Similarity=0.253  Sum_probs=100.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.+|+|.|+++..|.+..  +.+|.+||++|.+++.|++...  ..+++..+..|+...-.-              
T Consensus        74 G~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~--~~~~~~~i~~d~~~~~~~--------------  137 (227)
T d1g8aa_          74 GKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVE--ERRNIVPILGDATKPEEY--------------  137 (227)
T ss_dssp             TCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHS--SCTTEEEEECCTTCGGGG--------------
T ss_pred             CCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHH--hcCCceEEEEECCCcccc--------------
Confidence            4699999999999999999985  5799999999999999998754  235678888887643110              


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC------C-chH
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP------N-RSF  413 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~------~-~~~  413 (478)
                                   ......+|+|+.|+...+            ....++.++++.|+|||.+++-+.++      . ...
T Consensus       138 -------------~~~~~~vD~i~~d~~~~~------------~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v  192 (227)
T d1g8aa_         138 -------------RALVPKVDVIFEDVAQPT------------QAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQV  192 (227)
T ss_dssp             -------------TTTCCCEEEEEECCCSTT------------HHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHH
T ss_pred             -------------cccccceEEEEEEccccc------------hHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHH
Confidence                         013467999999864321            34779999999999999998755332      1 233


Q ss_pred             HHHHHHHHHHhcCccEEEeec--ccceEEEEEEcC
Q 038592          414 YDMLIQEFRDVFQELYEIDVG--NEENFVLIATGL  446 (478)
Q Consensus       414 ~~~v~~~l~~vF~~v~~~~v~--~~~N~Vl~a~~~  446 (478)
                      .+.+...+++-|.-+-.+.+.  +..+.+++|.++
T Consensus       193 ~~~v~~l~~~gf~iie~i~L~p~~~~H~~vv~rK~  227 (227)
T d1g8aa_         193 FREVERELSEYFEVIERLNLEPYEKDHALFVVRKT  227 (227)
T ss_dssp             HHHHHHHHHTTSEEEEEEECTTTSSSEEEEEEECC
T ss_pred             HHHHHHHHHcCCEEEEEEcCCCCCCceEEEEEEeC
Confidence            444555555567655444443  234566777653

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=98.68  E-value=8.5e-09  Score=98.84  Aligned_cols=96  Identities=16%  Similarity=0.248  Sum_probs=77.7

Q ss_pred             CCCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          262 FRPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       262 ~~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      .+.+||.||+|.|.++..|.+.. +.++++||+++.+++.|++..     ++++++++|+.+.                 
T Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~-----~~~~~~~~d~~~l-----------------  141 (268)
T d1p91a_          84 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRL-----------------  141 (268)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSC-----------------
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc-----ccccceeeehhhc-----------------
Confidence            46799999999999998888875 789999999999999999874     5789999998654                 


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                   +..+..||+|+.- ++          |.      .++.+++.|+|||.+++.+..+
T Consensus       142 -------------~~~~~sfD~v~~~-~~----------~~------~~~e~~rvLkpgG~l~~~~p~~  180 (268)
T d1p91a_         142 -------------PFSDTSMDAIIRI-YA----------PC------KAEELARVVKPGGWVITATPGP  180 (268)
T ss_dssp             -------------SBCTTCEEEEEEE-SC----------CC------CHHHHHHHEEEEEEEEEEEECT
T ss_pred             -------------cCCCCCEEEEeec-CC----------HH------HHHHHHHHhCCCcEEEEEeeCC
Confidence                         1246789999972 11          22      2567999999999999887655

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.68  E-value=9.8e-09  Score=96.54  Aligned_cols=97  Identities=21%  Similarity=0.245  Sum_probs=74.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.||+|+|+++..|.+. ..+|++||+++++++.|++.+.  ...+++++++|+..-..                 
T Consensus        71 g~~VLdIG~GsGy~ta~La~l-~~~V~aiE~~~~~~~~A~~~~~--~~~nv~~~~~d~~~g~~-----------------  130 (224)
T d1vbfa_          71 GQKVLEIGTGIGYYTALIAEI-VDKVVSVEINEKMYNYASKLLS--YYNNIKLILGDGTLGYE-----------------  130 (224)
T ss_dssp             TCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHT--TCSSEEEEESCGGGCCG-----------------
T ss_pred             cceEEEecCCCCHHHHHHHHH-hcccccccccHHHHHHHHHHHh--cccccccccCchhhcch-----------------
Confidence            469999999999999888765 5799999999999999998765  34689999999976321                 


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIP  408 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~  408 (478)
                                   ...+||+|++...       +    +++     ...+.+.|++||.+++-+..
T Consensus       131 -------------~~~pfD~Iiv~~a-------~----~~i-----p~~l~~qLk~GGrLV~pvg~  167 (224)
T d1vbfa_         131 -------------EEKPYDRVVVWAT-------A----PTL-----LCKPYEQLKEGGIMILPIGV  167 (224)
T ss_dssp             -------------GGCCEEEEEESSB-------B----SSC-----CHHHHHTEEEEEEEEEEECS
T ss_pred             -------------hhhhHHHHHhhcc-------h----hhh-----hHHHHHhcCCCCEEEEEEcC
Confidence                         2457999999531       1    111     23456889999999986643

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=2.9e-08  Score=92.38  Aligned_cols=107  Identities=16%  Similarity=0.121  Sum_probs=81.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-----------------CCCCeEEEEchHHHHHH
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-----------------DGEFLQVSVGDAIEFLE  325 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-----------------~d~rl~v~v~Dg~~~l~  325 (478)
                      ..+||++|||.|..+.+|.+. +.+|++||++|..++.|++..+..                 ...++++.++|..++..
T Consensus        46 ~~rvLd~GCG~G~~a~~LA~~-G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~  124 (229)
T d2bzga1          46 GLRVFFPLCGKAVEMKWFADR-GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPR  124 (229)
T ss_dssp             SCEEEETTCTTCTHHHHHHHT-TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGGG
T ss_pred             CCEEEEeCCCCcHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhccc
Confidence            569999999999999999875 789999999999999999876531                 24689999999887632


Q ss_pred             HHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592          326 KLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                                   .....||+|+.-..    .  ...+|.  ..+.+++.+.++|+|||.+++.
T Consensus       125 -----------------------------~~~~~fd~i~~~~~----l--~~~~~~--~r~~~~~~~~~~LkpgG~~~l~  167 (229)
T d2bzga1         125 -----------------------------TNIGKFDMIWDRGA----L--VAINPG--DRKCYADTMFSLLGKKFQYLLC  167 (229)
T ss_dssp             -----------------------------SCCCCEEEEEESSS----T--TTSCGG--GHHHHHHHHHHTEEEEEEEEEE
T ss_pred             -----------------------------cccCceeEEEEEEE----E--Eeccch--hhHHHHHHHHhhcCCcceEEEE
Confidence                                         14568999986211    1  111222  3578999999999999987665


Q ss_pred             eC
Q 038592          406 VI  407 (478)
Q Consensus       406 ~~  407 (478)
                      ..
T Consensus       168 ~~  169 (229)
T d2bzga1         168 VL  169 (229)
T ss_dssp             EE
T ss_pred             Ec
Confidence            43

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=98.66  E-value=8.8e-09  Score=97.31  Aligned_cols=111  Identities=21%  Similarity=0.104  Sum_probs=78.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcC-CCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFG-LEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg-~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||||.|.....+.+....+|++||+++.+++.|++... .....++.++++|+..-.                 
T Consensus        25 ~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~-----------------   87 (252)
T d1ri5a_          25 GDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRH-----------------   87 (252)
T ss_dssp             TCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSC-----------------
T ss_pred             cCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhc-----------------
Confidence            46999999999986666666544689999999999999997653 334567999999975320                 


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIP  408 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~  408 (478)
                                  ....++||+|++-- .-.   .+ ..+.. .-..+++.+++.|+|||+|++.+..
T Consensus        88 ------------~~~~~~fD~V~~~~-~l~---~~-~~~~~-~~~~~l~~i~~~Lk~gG~~i~~~~~  136 (252)
T d1ri5a_          88 ------------MDLGKEFDVISSQF-SFH---YA-FSTSE-SLDIAQRNIARHLRPGGYFIMTVPS  136 (252)
T ss_dssp             ------------CCCSSCEEEEEEES-CGG---GG-GSSHH-HHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             ------------ccccccceEEEEcc-eee---ec-CCCHH-HHHHHHHHHhceeCCCCEEEEEecC
Confidence                        01356799999831 100   00 00100 1146999999999999999987653

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.66  E-value=4.3e-08  Score=94.85  Aligned_cols=104  Identities=16%  Similarity=0.113  Sum_probs=79.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC-CCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL-EDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~-~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||||.|+++.++.+..+.+|++|+++++.++.|++...- ....++.+...|..++                  
T Consensus        53 g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~------------------  114 (280)
T d2fk8a1          53 GMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF------------------  114 (280)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC------------------
T ss_pred             CCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh------------------
Confidence            579999999999999999888789999999999999999987632 2245788888885533                  


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEe-CCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVD-LDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIP  408 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivD-v~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~  408 (478)
                                     ..+||.|+.- +..     .+   +.. .-+.||+.+++.|+|||.++++.+.
T Consensus       115 ---------------~~~fD~i~si~~~e-----h~---~~~-~~~~~f~~i~~~LkpgG~~~i~~i~  158 (280)
T d2fk8a1         115 ---------------AEPVDRIVSIEAFE-----HF---GHE-NYDDFFKRCFNIMPADGRMTVQSSV  158 (280)
T ss_dssp             ---------------CCCCSEEEEESCGG-----GT---CGG-GHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             ---------------ccchhhhhHhhHHH-----Hh---hhh-hHHHHHHHHHhccCCCceEEEEEee
Confidence                           4579999872 111     11   111 1268999999999999999998644

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=98.65  E-value=4.4e-08  Score=87.90  Aligned_cols=104  Identities=18%  Similarity=0.158  Sum_probs=72.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.+|+|.|+++..+... +.++++||+|+.++++|++.+....- .-+++..|+-.|+.....             
T Consensus        42 g~~vLDl~~G~G~~~i~a~~~-ga~vv~vD~~~~a~~~~~~N~~~~~~-~~~v~~~~~d~~~~~~~~-------------  106 (171)
T d1ws6a1          42 RGRFLDPFAGSGAVGLEAASE-GWEAVLVEKDPEAVRLLKENVRRTGL-GARVVALPVEVFLPEAKA-------------  106 (171)
T ss_dssp             CCEEEEETCSSCHHHHHHHHT-TCEEEEECCCHHHHHHHHHHHHHHTC-CCEEECSCHHHHHHHHHH-------------
T ss_pred             CCeEEEeccccchhhhhhhhc-cchhhhcccCHHHHhhhhHHHHhhcc-ccceeeeehhcccccccc-------------
Confidence            469999999999999876654 67999999999999999977542111 236777788777655322             


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHH--HHccCcCcEEEEEe
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAA--RLILSDFGIFVMNV  406 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~--~~~L~~~Gilv~N~  406 (478)
                                   ...+||+|++|.            |-..-..+.+..+  +..|++||++++-.
T Consensus       107 -------------~~~~fD~If~DP------------PY~~~~~~~l~~l~~~~ll~~~g~ivie~  147 (171)
T d1ws6a1         107 -------------QGERFTVAFMAP------------PYAMDLAALFGELLASGLVEAGGLYVLQH  147 (171)
T ss_dssp             -------------TTCCEEEEEECC------------CTTSCTTHHHHHHHHHTCEEEEEEEEEEE
T ss_pred             -------------cCCccceeEEcc------------ccccCHHHHHHHHHHcCCcCCCeEEEEEe
Confidence                         457899999973            3221112233333  34789999999754

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.65  E-value=3.2e-08  Score=91.73  Aligned_cols=140  Identities=16%  Similarity=0.172  Sum_probs=98.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||+|.|.++.+|.+.. +.+|++||++|.+++.|++...-  .+++..+++|+...-..               
T Consensus        57 g~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~--~~ni~~i~~d~~~~~~~---------------  119 (209)
T d1nt2a_          57 DERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE--RNNIIPLLFDASKPWKY---------------  119 (209)
T ss_dssp             SCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH--CSSEEEECSCTTCGGGT---------------
T ss_pred             CCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhc--cCCceEEEeeccCcccc---------------
Confidence            4699999999999999999875 57999999999999999876532  35789999997653110               


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC-------CchHH
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP-------NRSFY  414 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~-------~~~~~  414 (478)
                                  ......+|+|+.|+...+            ....++.++++.|+|||.+++-...+       .....
T Consensus       120 ------------~~~~~~vd~v~~~~~~~~------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~~  175 (209)
T d1nt2a_         120 ------------SGIVEKVDLIYQDIAQKN------------QIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVF  175 (209)
T ss_dssp             ------------TTTCCCEEEEEECCCSTT------------HHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHH
T ss_pred             ------------ccccceEEEEEecccChh------------hHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHHH
Confidence                        013456888888753221            34789999999999999998765322       22345


Q ss_pred             HHHHHHHHHhcCccEEEeecc-cceEEEEE
Q 038592          415 DMLIQEFRDVFQELYEIDVGN-EENFVLIA  443 (478)
Q Consensus       415 ~~v~~~l~~vF~~v~~~~v~~-~~N~Vl~a  443 (478)
                      +.+...+.+-|.-+-.+.+.. +.+..+|.
T Consensus       176 ~~~~~~l~~gf~i~E~i~L~P~~~~H~~v~  205 (209)
T d1nt2a_         176 KSVLKEMEGDFKIVKHGSLMPYHRDHIFIH  205 (209)
T ss_dssp             HHHHHHHHTTSEEEEEEECTTTCTTEEEEE
T ss_pred             HHHHHHHHcCCEEEEEEccCCCccCcEEEE
Confidence            666677777786555555432 23444443

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=1.3e-08  Score=95.54  Aligned_cols=101  Identities=23%  Similarity=0.223  Sum_probs=76.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCC---C--CCCCeEEEEchHHHHHHHHHhhhcCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGL---E--DGEFLQVSVGDAIEFLEKLARQIVGKN  335 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~---~--~d~rl~v~v~Dg~~~l~~~~~~~~~~~  335 (478)
                      ..+||.||+|+|.++..|.+..  ..+|++||+++++++.|++.+..   .  ...+++++++|+..-..          
T Consensus        77 g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~----------  146 (224)
T d1i1na_          77 GAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA----------  146 (224)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG----------
T ss_pred             CCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccc----------
Confidence            4699999999999998888763  47999999999999999987642   1  23578999999975321          


Q ss_pred             CCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          336 PDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                          ....||+|+++....           +     ..+.+.+.|+|||.+++-+...
T Consensus       147 --------------------~~~~fD~I~~~~~~~-----------~-----ip~~l~~~LkpGG~LV~pv~~~  184 (224)
T d1i1na_         147 --------------------EEAPYDAIHVGAAAP-----------V-----VPQALIDQLKPGGRLILPVGPA  184 (224)
T ss_dssp             --------------------GGCCEEEEEECSBBS-----------S-----CCHHHHHTEEEEEEEEEEESCT
T ss_pred             --------------------hhhhhhhhhhhcchh-----------h-----cCHHHHhhcCCCcEEEEEEccC
Confidence                                345799999964211           1     1134678999999999866543

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.64  E-value=3.3e-08  Score=91.45  Aligned_cols=130  Identities=20%  Similarity=0.266  Sum_probs=91.7

Q ss_pred             CCeEEEEeCchhHHHHHHHhh-CCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQ-LDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~-~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      .+-||.||+|.|.....+++. ++..+++||+++.++..|.+...-..-++++++.+|+..+...               
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~---------------   96 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDY---------------   96 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGT---------------
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhh---------------
Confidence            468999999999988777776 5899999999999999887654322235899999999876432               


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHH
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEF  421 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l  421 (478)
                                   .+...+|.|++--  +|+..--.---..+++++||+.+++.|+|||.|.+-  +.+....+.++..+
T Consensus        97 -------------~~~~~~~~i~i~f--PdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~--TD~~~Y~~~~le~~  159 (204)
T d1yzha1          97 -------------FEDGEIDRLYLNF--SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK--TDNRGLFEYSLVSF  159 (204)
T ss_dssp             -------------SCTTCCSEEEEES--CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE--ESCHHHHHHHHHHH
T ss_pred             -------------ccCCceehhcccc--cccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEE--ECCccHHHHHHHHH
Confidence                         1456789998843  332200000012367899999999999999998753  33455556666666


Q ss_pred             HHh
Q 038592          422 RDV  424 (478)
Q Consensus       422 ~~v  424 (478)
                      .+.
T Consensus       160 ~~~  162 (204)
T d1yzha1         160 SQY  162 (204)
T ss_dssp             HHH
T ss_pred             HHC
Confidence            554

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.61  E-value=1.6e-07  Score=88.27  Aligned_cols=142  Identities=17%  Similarity=0.202  Sum_probs=98.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||+|.|+.+..|.+.. +..|.+||++|.+++.|++-..  ..+++..+.+|+.....-               
T Consensus        75 G~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~--~~~ni~~i~~d~~~~~~~---------------  137 (230)
T d1g8sa_          75 DSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACA--ERENIIPILGDANKPQEY---------------  137 (230)
T ss_dssp             TCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTT--TCTTEEEEECCTTCGGGG---------------
T ss_pred             CCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHh--hhcccceEEEeeccCccc---------------
Confidence            4699999999999999999874 6799999999999999987643  356788899998765321               


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC-------CchHH
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP-------NRSFY  414 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~-------~~~~~  414 (478)
                                  ......+|+|+.|+...         +   ....++.++++.|+|||.+++-...+       .....
T Consensus       138 ------------~~~~~~v~~i~~~~~~~---------~---~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~  193 (230)
T d1g8sa_         138 ------------ANIVEKVDVIYEDVAQP---------N---QAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIF  193 (230)
T ss_dssp             ------------TTTCCCEEEEEECCCST---------T---HHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHH
T ss_pred             ------------ccccceeEEeeccccch---------H---HHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHH
Confidence                        01223456666654321         1   24778999999999999988754322       12335


Q ss_pred             HHHHHHHHHh-cCccEEEeec--ccceEEEEEEc
Q 038592          415 DMLIQEFRDV-FQELYEIDVG--NEENFVLIATG  445 (478)
Q Consensus       415 ~~v~~~l~~v-F~~v~~~~v~--~~~N~Vl~a~~  445 (478)
                      +.+.+.|++. |..+-.+++.  +..+.++++.-
T Consensus       194 ~e~~~~L~~aGF~ive~idL~py~~~H~~vvg~y  227 (230)
T d1g8sa_         194 KEQKEILEAGGFKIVDEVDIEPFEKDHVMFVGIW  227 (230)
T ss_dssp             HHHHHHHHHHTEEEEEEEECTTTSTTEEEEEEEE
T ss_pred             HHHHHHHHHcCCEEEEEecCCCCcCCeEEEEEEe
Confidence            5667777766 7655555553  23355666653

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=6.7e-08  Score=94.18  Aligned_cols=105  Identities=22%  Similarity=0.140  Sum_probs=77.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      .++||.||+|.|.+++++++....+|+++|+++.+..+++..-.....++++++.+|..++-                  
T Consensus        36 ~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~------------------   97 (311)
T d2fyta1          36 DKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVH------------------   97 (311)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSC------------------
T ss_pred             cCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhc------------------
Confidence            46899999999999999988755799999999998765543322234578999999987651                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                  ....+||+|+.+.....       ...+-.-+.++....+.|+|||.++-
T Consensus        98 ------------~~~~~~D~Ivse~~~~~-------~~~e~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1          98 ------------LPVEKVDVIISEWMGYF-------LLFESMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             ------------CSCSCEEEEEECCCBTT-------BTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             ------------CccccceEEEEeeeeee-------cccccccHHHHHHHHhcCCCCcEEec
Confidence                        14578999998653321       11222346778888899999999873

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.57  E-value=1.1e-07  Score=92.21  Aligned_cols=105  Identities=20%  Similarity=0.210  Sum_probs=81.6

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcC-CCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFG-LEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg-~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||||.|+++.++.+..+++|++|.++++-++.|++... ....+++++..+|..++                  
T Consensus        63 G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~------------------  124 (285)
T d1kpga_          63 GMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF------------------  124 (285)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC------------------
T ss_pred             CCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc------------------
Confidence            57999999999999999988889999999999999999988653 33457899999997533                  


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIP  408 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~  408 (478)
                                     +.+||.|+. +..-..   +.  ..  .-..|++.+++.|+|||.+++..++
T Consensus       125 ---------------~~~fD~i~s-i~~~eh---~~--~~--~~~~~~~~~~r~LkpgG~~~l~~i~  168 (285)
T d1kpga_         125 ---------------DEPVDRIVS-IGAFEH---FG--HE--RYDAFFSLAHRLLPADGVMLLHTIT  168 (285)
T ss_dssp             ---------------CCCCSEEEE-ESCGGG---TC--TT--THHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             ---------------cccccceee-ehhhhh---cC--ch--hHHHHHHHHHhhcCCCCcEEEEEEe
Confidence                           457998876 111111   10  11  2368999999999999999987765

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=98.56  E-value=2.8e-08  Score=94.05  Aligned_cols=103  Identities=21%  Similarity=0.220  Sum_probs=75.3

Q ss_pred             CCCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          262 FRPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       262 ~~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      ..++||.||+|.|.++..+.+.. +.+++++|+ |.+++.|++.+.-. ..+|++++.+|..+.                
T Consensus        80 ~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~----------------  142 (253)
T d1tw3a2          80 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP----------------  142 (253)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC----------------
T ss_pred             cCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhh----------------
Confidence            35799999999999888887764 789999998 77899999876422 357899999997542                


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                      ....||+|++--    .   +..-|.. ....+|+++++.|+|||.+++.
T Consensus       143 ----------------~~~~~D~v~~~~----v---lh~~~d~-~~~~~L~~~~~~LkPGG~l~i~  184 (253)
T d1tw3a2         143 ----------------LPRKADAIILSF----V---LLNWPDH-DAVRILTRCAEALEPGGRILIH  184 (253)
T ss_dssp             ----------------CSSCEEEEEEES----C---GGGSCHH-HHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ----------------cccchhheeecc----c---cccCCch-hhHHHHHHHHHhcCCCcEEEEE
Confidence                            235699999721    0   1000100 1246899999999999988763

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.56  E-value=8.8e-08  Score=93.72  Aligned_cols=104  Identities=20%  Similarity=0.139  Sum_probs=75.7

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcC-CCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFG-LEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg-~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      .++||.||+|.|.++.++.++...+|++||+++.+..+ ++... -...++++++.+|..+.-                 
T Consensus        34 ~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a-~~~~~~n~~~~~v~~~~~~~~~~~-----------------   95 (316)
T d1oria_          34 DKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYA-VKIVKANKLDHVVTIIKGKVEEVE-----------------   95 (316)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHH-HHHHHHTTCTTTEEEEESCTTTCC-----------------
T ss_pred             cCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhh-hhHHHHhCCccccceEeccHHHcc-----------------
Confidence            46899999999999998888645699999999976544 43321 122467999999987651                 


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                   .+..+||+|+.+.....       ...+-.-++++..+++.|+|||.++-
T Consensus        96 -------------~~~~~~D~ivs~~~~~~-------l~~e~~~~~~l~~~~r~Lkp~G~iiP  138 (316)
T d1oria_          96 -------------LPVEKVDIIISEWMGYC-------LFYESMLNTVLHARDKWLAPDGLIFP  138 (316)
T ss_dssp             -------------CSSSCEEEEEECCCBBT-------BTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             -------------cccceeEEEeeeeeeee-------eccHHHHHHHHHHHHhcCCCCeEEEe
Confidence                         14578999998654321       12222347899999999999999873

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=1e-07  Score=90.92  Aligned_cols=127  Identities=14%  Similarity=0.120  Sum_probs=85.2

Q ss_pred             CeEEEEeCchhHHHHHHHhh----C-C--CEEEEEECChHHHHHHHHhcCCC-CCC--CeEEEEchHHHHHHHHHhhhcC
Q 038592          264 PKALCVGVGGGALVSFLRTQ----L-D--FEVVGVEMDEVVLRVARQYFGLE-DGE--FLQVSVGDAIEFLEKLARQIVG  333 (478)
Q Consensus       264 ~~VLvIGlGgG~L~~~L~~~----~-~--~~V~~VEiDp~Vl~vA~~~Fg~~-~d~--rl~v~v~Dg~~~l~~~~~~~~~  333 (478)
                      .+||.||+|.|.++..|.+.    . +  .++++||+++.+++.|++.+.-. .-+  ++.++..++.++......    
T Consensus        42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  117 (280)
T d1jqea_          42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLE----  117 (280)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTT----
T ss_pred             CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcc----
Confidence            48999999999877666543    2 2  47899999999999999887532 223  345677777777544221    


Q ss_pred             CCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchH
Q 038592          334 KNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSF  413 (478)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~  413 (478)
                                          .....+||+|+.=  ..  ...+   +   --..+++.+++.|+|||.+++.+.+....+
T Consensus       118 --------------------~~~~~~fD~I~~~--~~--l~~~---~---d~~~~l~~l~~~LkpgG~l~i~~~~~~~~~  167 (280)
T d1jqea_         118 --------------------KKELQKWDFIHMI--QM--LYYV---K---DIPATLKFFHSLLGTNAKMLIIVVSGSSGW  167 (280)
T ss_dssp             --------------------SSSCCCEEEEEEE--SC--GGGC---S---CHHHHHHHHHHTEEEEEEEEEEEECTTSHH
T ss_pred             --------------------cCCCCceeEEEEc--cc--eecC---C---CHHHHHHHHHhhCCCCCEEEEEEecCcchH
Confidence                                1256789999981  11  1011   1   126899999999999999998877664432


Q ss_pred             HHHHHHHHHHhc
Q 038592          414 YDMLIQEFRDVF  425 (478)
Q Consensus       414 ~~~v~~~l~~vF  425 (478)
                       ..+...+...|
T Consensus       168 -~~l~~~~~~~~  178 (280)
T d1jqea_         168 -DKLWKKYGSRF  178 (280)
T ss_dssp             -HHHHHHHGGGS
T ss_pred             -HHHHHHHHHhc
Confidence             33344444444

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.56  E-value=1.3e-07  Score=92.09  Aligned_cols=108  Identities=17%  Similarity=0.192  Sum_probs=81.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcC-CCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFG-LEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg-~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||||.|+++.++.+..+++|++|+++++-++.|++... .....++++...|...                   
T Consensus        62 G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~-------------------  122 (291)
T d1kpia_          62 GMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE-------------------  122 (291)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGG-------------------
T ss_pred             CCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccc-------------------
Confidence            57999999999999999988778999999999999999987653 2234688999988531                   


Q ss_pred             ccccCCCccCCCCCCCCceeEEEE-eCCCCCCCCCCCCCCCC---C-ChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMV-DLDSGDARNGTSAPPVE---F-VRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIiv-Dv~s~d~~~g~s~Pp~~---f-~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                    .+.+||.|+. ..+.     .|. ++..   . .=+.|++.+++.|+|||.+++..++.
T Consensus       123 --------------~~~~fD~i~sie~~e-----H~~-~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~  175 (291)
T d1kpia_         123 --------------FDEPVDRIVSLGAFE-----HFA-DGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITI  175 (291)
T ss_dssp             --------------CCCCCSEEEEESCGG-----GTT-CCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEEC
T ss_pred             --------------cccccceEeechhHH-----hcc-hhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEec
Confidence                          3567999986 2111     111 1111   1 12689999999999999999988764

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.54  E-value=1.4e-08  Score=97.38  Aligned_cols=100  Identities=17%  Similarity=0.103  Sum_probs=81.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.+|+|.|.++..++++...+|++||++|..++.|++...+. -+++++++.+|+.++.                 
T Consensus       108 g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~-----------------  170 (260)
T d2frna1         108 DELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-----------------  170 (260)
T ss_dssp             TCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-----------------
T ss_pred             ccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhc-----------------
Confidence            4699999999999998888776679999999999999999877542 2468999999998773                 


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVI  407 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~  407 (478)
                                    ....||.|+++.            |.  ...+|+..+.+.|++||++.+...
T Consensus       171 --------------~~~~~D~Ii~~~------------p~--~~~~~l~~a~~~l~~gG~lh~~~~  208 (260)
T d2frna1         171 --------------GENIADRILMGY------------VV--RTHEFIPKALSIAKDGAIIHYHNT  208 (260)
T ss_dssp             --------------CCSCEEEEEECC------------CS--SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             --------------cCCCCCEEEECC------------CC--chHHHHHHHHhhcCCCCEEEEEec
Confidence                          346799999852            22  346799999999999999976543

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.54  E-value=1.1e-07  Score=91.55  Aligned_cols=116  Identities=14%  Similarity=0.102  Sum_probs=77.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCC----CCCeEEEEchHHHHHHHHHhhhcCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLED----GEFLQVSVGDAIEFLEKLARQIVGKNPDS  338 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~----d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~  338 (478)
                      ..+||.||||+|.++..|.+. +.+|++||+++.+++.|++...-..    ..+..+...|....-...           
T Consensus        57 ~~~vLD~GcG~G~~~~~la~~-g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  124 (292)
T d1xvaa_          57 CHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDV-----------  124 (292)
T ss_dssp             CCEEEESSCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHS-----------
T ss_pred             CCEEEEecCCCcHHHHHHHHc-CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeecccccccccc-----------
Confidence            469999999999999998876 6799999999999999987653111    113344555554432220           


Q ss_pred             CCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC-ChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          339 FGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF-VRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f-~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                      ....+||+|++-.++   ...+..+.... --..+|+.+++.|+|||+|++.+.+.
T Consensus       125 ----------------~~~~~fd~v~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  177 (292)
T d1xvaa_         125 ----------------PAGDGFDAVICLGNS---FAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNY  177 (292)
T ss_dssp             ----------------CCTTCEEEEEECSSC---GGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             ----------------CCCCCceEEEEecCc---hhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecCH
Confidence                            135679999983211   11111111111 12569999999999999999987643

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.50  E-value=2.5e-07  Score=90.83  Aligned_cols=103  Identities=22%  Similarity=0.234  Sum_probs=76.7

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC-CCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL-EDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~-~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      .++||.||+|.|.++++++++...+|+++|.++ +++.|++.... ....+++++.+|..+.-                 
T Consensus        39 ~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~-----------------  100 (328)
T d1g6q1_          39 DKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVH-----------------  100 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSC-----------------
T ss_pred             cCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhcc-----------------
Confidence            479999999999999998886556999999998 55667654421 23568999999976541                 


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEE
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFV  403 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv  403 (478)
                                   .+..+||+|+......-       ....-.-..++..+++.|+|||+++
T Consensus       101 -------------~~~~~~D~i~se~~~~~-------~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         101 -------------LPFPKVDIIISEWMGYF-------LLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             -------------CSSSCEEEEEECCCBTT-------BSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             -------------CcccceeEEEEEeccee-------eccchhHHHHHHHHHhccCCCeEEE
Confidence                         24678999999654321       1122245778899999999999986

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=98.47  E-value=1e-07  Score=86.50  Aligned_cols=95  Identities=23%  Similarity=0.282  Sum_probs=72.7

Q ss_pred             CeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCccc
Q 038592          264 PKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACS  343 (478)
Q Consensus       264 ~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~  343 (478)
                      .+||.||+|+|.++..+.     ++++||+++.+++.|++.       +++++.+|+.+.-                   
T Consensus        38 ~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~-------~~~~~~~d~~~l~-------------------   86 (208)
T d1vlma_          38 GRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR-------GVFVLKGTAENLP-------------------   86 (208)
T ss_dssp             SCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT-------TCEEEECBTTBCC-------------------
T ss_pred             CeEEEECCCCcccccccc-----eEEEEeCChhhccccccc-------ccccccccccccc-------------------
Confidence            489999999999877664     468999999999999874       4789999986541                   


Q ss_pred             ccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCC
Q 038592          344 LKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPN  410 (478)
Q Consensus       344 ~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~  410 (478)
                                 ..+.+||+|+.--    .   +..-+   --..+++.+++.|+|||.+++.....+
T Consensus        87 -----------~~~~~fD~I~~~~----~---l~h~~---d~~~~l~~~~~~L~pgG~l~i~~~~~~  132 (208)
T d1vlma_          87 -----------LKDESFDFALMVT----T---ICFVD---DPERALKEAYRILKKGGYLIVGIVDRE  132 (208)
T ss_dssp             -----------SCTTCEEEEEEES----C---GGGSS---CHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred             -----------ccccccccccccc----c---ccccc---ccccchhhhhhcCCCCceEEEEecCCc
Confidence                       2467899999821    1   11111   136799999999999999999876653

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.46  E-value=2.6e-08  Score=93.41  Aligned_cols=101  Identities=22%  Similarity=0.314  Sum_probs=74.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-------CCEEEEEECChHHHHHHHHhcCCC-----CCCCeEEEEchHHHHHHHHHhh
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-------DFEVVGVEMDEVVLRVARQYFGLE-----DGEFLQVSVGDAIEFLEKLARQ  330 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-------~~~V~~VEiDp~Vl~vA~~~Fg~~-----~d~rl~v~v~Dg~~~l~~~~~~  330 (478)
                      ..+||.||+|+|+++..|.+..       ..+|++||+++++++.|++.+...     .-.++.++.+||.+-..     
T Consensus        81 g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~-----  155 (223)
T d1r18a_          81 GARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYP-----  155 (223)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCG-----
T ss_pred             CCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccccc-----
Confidence            4699999999999888887753       248999999999999998764211     12579999999976321     


Q ss_pred             hcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          331 IVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                               ...+||+|+++....       ..|         +.+.+.|++||.+++=+...
T Consensus       156 -------------------------~~~~fD~Iiv~~a~~-------~~p---------~~l~~~Lk~gG~lV~pvg~~  193 (223)
T d1r18a_         156 -------------------------PNAPYNAIHVGAAAP-------DTP---------TELINQLASGGRLIVPVGPD  193 (223)
T ss_dssp             -------------------------GGCSEEEEEECSCBS-------SCC---------HHHHHTEEEEEEEEEEESCS
T ss_pred             -------------------------cccceeeEEEEeech-------hch---------HHHHHhcCCCcEEEEEEecC
Confidence                                     345799999954221       112         24678999999999866533

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.44  E-value=1.2e-06  Score=84.10  Aligned_cols=149  Identities=13%  Similarity=0.114  Sum_probs=98.6

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC-CCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL-EDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~-~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      +.+++.+|+|+|+++..+++.++.+|+++|++|.-+++|++.... ....++.++.+|..+.+.+               
T Consensus       111 ~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~---------------  175 (271)
T d1nv8a_         111 IKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKE---------------  175 (271)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGG---------------
T ss_pred             ccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeeccccccccc---------------
Confidence            568999999999999988887889999999999999999986532 1246889999998876532               


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCC-----CCCCCCCCh----HHHHHH-HHHccCcCcEEEEEeCCCCc
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGT-----SAPPVEFVR----KDVLLA-ARLILSDFGIFVMNVIPPNR  411 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~-----s~Pp~~f~~----~efl~~-~~~~L~~~Gilv~N~~~~~~  411 (478)
                                    ...+||+|+.+..=-.....+     .-|...|+.    -+|++. +++.|++||.+++=+.....
T Consensus       176 --------------~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~~Q~  241 (271)
T d1nv8a_         176 --------------KFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQV  241 (271)
T ss_dssp             --------------GTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCH
T ss_pred             --------------ccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECHHHH
Confidence                          346799999853200000000     011111110    134433 56789999999987764432


Q ss_pred             hHHHHHHHHHHHhcCccEEEeecccceEEEEEEcCC
Q 038592          412 SFYDMLIQEFRDVFQELYEIDVGNEENFVLIATGLS  447 (478)
Q Consensus       412 ~~~~~v~~~l~~vF~~v~~~~v~~~~N~Vl~a~~~~  447 (478)
                             ..+++.|.++-.++=-.+..+++++++..
T Consensus       242 -------~~v~~l~~~~g~~kDl~g~~R~~~~~k~~  270 (271)
T d1nv8a_         242 -------EELKKIVSDTVFLKDSAGKYRFLLLNRRS  270 (271)
T ss_dssp             -------HHHTTTSTTCEEEECTTSSEEEEEEECCC
T ss_pred             -------HHHHHHHHhCCEEeccCCCcEEEEEEEcC
Confidence                   24556777654443223457888888754

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.40  E-value=9.7e-08  Score=90.81  Aligned_cols=102  Identities=18%  Similarity=0.143  Sum_probs=74.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCC-CCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGL-EDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~-~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.||+|.|.++..|.+.. +.+++++|+ |.+++.|++++.- ...+|+.++.+|..+.                 
T Consensus        82 ~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~-----------------  143 (256)
T d1qzza2          82 VRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP-----------------  143 (256)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC-----------------
T ss_pred             CCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeecccc-----------------
Confidence            5799999999999998888865 789999998 8899999987742 2357899999986532                 


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                     ....||+|++=-    ....+  +.+  ....+|+++++.|+|||.+++.
T Consensus       144 ---------------~p~~~D~v~~~~----vLh~~--~d~--~~~~lL~~i~~~LkpgG~llI~  185 (256)
T d1qzza2         144 ---------------LPVTADVVLLSF----VLLNW--SDE--DALTILRGCVRALEPGGRLLVL  185 (256)
T ss_dssp             ---------------CSCCEEEEEEES----CGGGS--CHH--HHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ---------------ccccchhhhccc----ccccc--CcH--HHHHHHHHHHhhcCCcceeEEE
Confidence                           234599999821    00000  110  1257899999999999977764

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.20  E-value=1.6e-06  Score=79.16  Aligned_cols=111  Identities=23%  Similarity=0.167  Sum_probs=81.7

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ...++.+++|+|+.+..+.+.. +.+|.++|.||++++.|++.+.- -..|++++.++..+.-.-+..            
T Consensus        24 ~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~-~~~r~~~~~~~f~~~~~~~~~------------   90 (192)
T d1m6ya2          24 EKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKE-FSDRVSLFKVSYREADFLLKT------------   90 (192)
T ss_dssp             TCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGG-GTTTEEEEECCGGGHHHHHHH------------
T ss_pred             CCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcc-ccccccchhHHHhhHHHHHHH------------
Confidence            4689999999999888877764 78999999999999999987642 246899999876553222111            


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCC-----CCC-ChHHHHHHHHHccCcCcEEEEEe
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPP-----VEF-VRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp-----~~f-~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                   ....++|.|++|+-       +|++-     ..| ...++|..+.+.|++||.+++..
T Consensus        91 -------------~~~~~vdgIl~DlG-------vSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~  141 (192)
T d1m6ya2          91 -------------LGIEKVDGILMDLG-------VSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVIS  141 (192)
T ss_dssp             -------------TTCSCEEEEEEECS-------CCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred             -------------cCCCCcceeeeccc-------hhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeec
Confidence                         13568999999973       32210     111 34688999999999999998643

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.16  E-value=2.8e-06  Score=77.91  Aligned_cols=55  Identities=18%  Similarity=0.154  Sum_probs=46.6

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHH
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIE  322 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~  322 (478)
                      .++||.+|+|+|.++..+......+|++||+|+..++.|++..     ++++++++|..+
T Consensus        49 Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~-----~~~~~~~~D~~~  103 (197)
T d1ne2a_          49 GRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNC-----GGVNFMVADVSE  103 (197)
T ss_dssp             TSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHC-----TTSEEEECCGGG
T ss_pred             CCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHcc-----ccccEEEEehhh
Confidence            5799999999999987766654468999999999999999985     368899999743

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.16  E-value=6.5e-06  Score=75.24  Aligned_cols=60  Identities=27%  Similarity=0.231  Sum_probs=49.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHH
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEF  323 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~  323 (478)
                      .++||.+|+|+|+++..+......+|++||+|+..++.|++..... +.+.+++.+|..++
T Consensus        47 g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~-~~~~~~~~~d~~~~  106 (201)
T d1wy7a1          47 GKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEF-KGKFKVFIGDVSEF  106 (201)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGG-TTSEEEEESCGGGC
T ss_pred             CCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHc-CCCceEEECchhhh
Confidence            5799999999999998777654469999999999999999876432 34688999997543

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.10  E-value=4e-06  Score=75.50  Aligned_cols=107  Identities=19%  Similarity=0.244  Sum_probs=81.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC--CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE--DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~--~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.+-+|+|+++......-..+|+.||.|+..+++.++.+..-  .+....++..|..++++..             
T Consensus        44 ~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~-------------  110 (183)
T d2ifta1          44 QSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQP-------------  110 (183)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSC-------------
T ss_pred             cceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhccccccccccccccccccccc-------------
Confidence            4699999999999998777664569999999999999999875421  3456889999999997541             


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC-ChHHHHHHHHH--ccCcCcEEEEEeCC
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF-VRKDVLLAARL--ILSDFGIFVMNVIP  408 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f-~~~efl~~~~~--~L~~~Gilv~N~~~  408 (478)
                                    ....+||+|++|            ||-.. ...+.++.+.+  .|+++|++++-...
T Consensus       111 --------------~~~~~fDlIFlD------------PPY~~~~~~~~l~~l~~~~~L~~~~liiiE~~~  155 (183)
T d2ifta1         111 --------------QNQPHFDVVFLD------------PPFHFNLAEQAISLLCENNWLKPNALIYVETEK  155 (183)
T ss_dssp             --------------CSSCCEEEEEEC------------CCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred             --------------ccCCcccEEEec------------hhHhhhhHHHHHHHHHHhCCcCCCcEEEEEecC
Confidence                          134579999997            34322 34567777765  68999999986543

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=1.4e-06  Score=81.06  Aligned_cols=131  Identities=13%  Similarity=0.028  Sum_probs=72.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHH-------------h
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLA-------------R  329 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~-------------~  329 (478)
                      +.+||.||+|.|.++.++......+|+++|+++.+++.|+++..-.   ...+...+..+++....             .
T Consensus        52 g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (257)
T d2a14a1          52 GDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKE---PGAYDWTPAVKFACELEGNSGRWEEKEEKLR  128 (257)
T ss_dssp             EEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTC---TTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhc---cccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence            4689999999998776665443358999999999999999886422   12233333444433211             0


Q ss_pred             hhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCC
Q 038592          330 QIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIP  408 (478)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~  408 (478)
                      ....    ......+ ..+.. ..+.....||+|+.-- .-..   +  ++..-.-..+++++.+.|+|||.+++..+.
T Consensus       129 ~~~~----~~~~~~~-~~~~~-~~~~~~~~fD~i~~~~-~l~~---~--~~~~~~~~~~l~~i~~~LkpGG~li~~~~~  195 (257)
T d2a14a1         129 AAVK----RVLKCDV-HLGNP-LAPAVLPLADCVLTLL-AMEC---A--CCSLDAYRAALCNLASLLKPGGHLVTTVTL  195 (257)
T ss_dssp             HHEE----EEEECCT-TSSST-TTTCCCCCEEEEEEES-CHHH---H--CSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred             hhhh----ccccccc-ccccc-cccccCCcccEEeehh-hHHH---h--cccHHHHHHHHHHHHhccCCCcEEEEEEec
Confidence            0000    0000000 00000 0122467899998721 1000   0  110001246899999999999999986543

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=7.2e-05  Score=73.02  Aligned_cols=102  Identities=18%  Similarity=0.106  Sum_probs=73.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCC-CEEEEEECChHHHHHHHHh----------cCCCCCCCeEEEEchHHHHHHHHHhhh
Q 038592          263 RPKALCVGVGGGALVSFLRTQLD-FEVVGVEMDEVVLRVARQY----------FGLEDGEFLQVSVGDAIEFLEKLARQI  331 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~----------Fg~~~d~rl~v~v~Dg~~~l~~~~~~~  331 (478)
                      ...||.||+|.|.++..+....+ .++.+||+++.+++.|++.          +|. ...+++++.+|+.+.--.  .  
T Consensus       152 ~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~-~~~~i~~~~gd~~~~~~~--~--  226 (328)
T d1nw3a_         152 DDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGK-KHAEYTLERGDFLSEEWR--E--  226 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTC-CCCCEEEEECCTTSHHHH--H--
T ss_pred             CCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccc-cCCceEEEECcccccccc--c--
Confidence            46899999999999988887765 5899999999999998753          343 346799999998764111  0  


Q ss_pred             cCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          332 VGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                              .-...|+|++.-..         -.+.  -...|..+.+.|+|||.+++
T Consensus       227 ------------------------~~~~advi~~~~~~---------f~~~--~~~~l~e~~r~LKpGg~iv~  264 (328)
T d1nw3a_         227 ------------------------RIANTSVIFVNNFA---------FGPE--VDHQLKERFANMKEGGRIVS  264 (328)
T ss_dssp             ------------------------HHHHCSEEEECCTT---------TCHH--HHHHHHHHHTTCCTTCEEEE
T ss_pred             ------------------------ccCcceEEEEccee---------cchH--HHHHHHHHHHhCCCCcEEEE
Confidence                                    01136888873111         0111  14678889999999999986

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.78  E-value=3.8e-05  Score=76.67  Aligned_cols=101  Identities=17%  Similarity=0.094  Sum_probs=81.1

Q ss_pred             CCeEEEEeCchhHHHH-HHHhhCCCEEEEEECChHHHHHHHHhcCCC---------------CCCCeEEEEchHHHHHHH
Q 038592          263 RPKALCVGVGGGALVS-FLRTQLDFEVVGVEMDEVVLRVARQYFGLE---------------DGEFLQVSVGDAIEFLEK  326 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~-~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~---------------~d~rl~v~v~Dg~~~l~~  326 (478)
                      +.+||...+|+|..+. +..+....+|+++|+|+..++++++.+.+.               ....+.+...|+..++.+
T Consensus        46 ~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~  125 (375)
T d2dula1          46 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE  125 (375)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred             CCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhHh
Confidence            6799999999999775 455443459999999999999999876321               134688999999999866


Q ss_pred             HHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592          327 LARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                                   ...+||+|.+|.|.+        |      ..|++.+.+.++.||++.+-.
T Consensus       126 -----------------------------~~~~fDvIDiDPfGs--------~------~pfldsAi~a~~~~Gll~vTa  162 (375)
T d2dula1         126 -----------------------------RHRYFHFIDLDPFGS--------P------MEFLDTALRSAKRRGILGVTA  162 (375)
T ss_dssp             -----------------------------STTCEEEEEECCSSC--------C------HHHHHHHHHHEEEEEEEEEEE
T ss_pred             -----------------------------hcCcCCcccCCCCCC--------c------HHHHHHHHHHhccCCEEEEEe
Confidence                                         467899999987542        2      569999999999999998754

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=97.75  E-value=1.6e-05  Score=74.55  Aligned_cols=58  Identities=21%  Similarity=0.272  Sum_probs=52.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHH
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEF  323 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~  323 (478)
                      ..+||.||.|.|+|+..|.+. ..+|++||+|+.+++..++.|.  ..++++++.+|++++
T Consensus        22 ~d~VlEIGpG~G~LT~~Ll~~-~~~v~avE~D~~l~~~l~~~~~--~~~n~~i~~~D~l~~   79 (235)
T d1qama_          22 HDNIFEIGSGKGHFTLELVQR-CNFVTAIEIDHKLCKTTENKLV--DHDNFQVLNKDILQF   79 (235)
T ss_dssp             TCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHTT--TCCSEEEECCCGGGC
T ss_pred             CCeEEEECCCchHHHHHHHhC-cCceEEEeeccchHHHHHHHhh--cccchhhhhhhhhhc
Confidence            569999999999999999986 5799999999999999998764  457999999999987

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=9.2e-06  Score=76.84  Aligned_cols=45  Identities=9%  Similarity=0.008  Sum_probs=36.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL  307 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~  307 (478)
                      +.++|.||+|.|.++.++......+|+++|+++.+++.|++|..-
T Consensus        55 g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~   99 (263)
T d2g72a1          55 GRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQE   99 (263)
T ss_dssp             CSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTT
T ss_pred             CcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhc
Confidence            679999999999776443332235999999999999999999753

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.73  E-value=5.7e-05  Score=76.14  Aligned_cols=61  Identities=18%  Similarity=0.172  Sum_probs=46.0

Q ss_pred             cccchhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhCC-CEEEEEECChHHHHHHHHh
Q 038592          233 GVLVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLD-FEVVGVEMDEVVLRVARQY  304 (478)
Q Consensus       233 ~~L~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~  304 (478)
                      +++..+....|+.-+-+-           ...++|.||+|.|.++..++...+ .++++||+++.+++.|++.
T Consensus       198 GEl~~~~i~~Il~~l~Lk-----------pgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~  259 (406)
T d1u2za_         198 GELLPNFLSDVYQQCQLK-----------KGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQ  259 (406)
T ss_dssp             CCBCHHHHHHHHHHTTCC-----------TTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHhCCC-----------CCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHH
Confidence            455555555555543321           245899999999999998888765 5899999999999999853

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=9.3e-05  Score=69.63  Aligned_cols=61  Identities=13%  Similarity=0.293  Sum_probs=49.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHH
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEF  323 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~  323 (478)
                      ..++|.||+|+|+++..|.+.. +.+++++|++++.+++|++..... -..|+.++..+....
T Consensus        62 ~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~  124 (250)
T d2h00a1          62 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTL  124 (250)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCS
T ss_pred             cceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHh
Confidence            5799999999999998887764 899999999999999999876422 356888887765443

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.60  E-value=0.00022  Score=68.20  Aligned_cols=139  Identities=15%  Similarity=0.082  Sum_probs=95.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.+..|-|+=+..|.+.. +.+|+++|+++.-++..++.+.-..-..+.+...|.. +....              
T Consensus       103 g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~-~~~~~--------------  167 (284)
T d1sqga2         103 GEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRY-PSQWC--------------  167 (284)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTC-THHHH--------------
T ss_pred             cceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccc-cchhc--------------
Confidence            4699999999998777777765 5799999999998887776543211233444444443 22210              


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCC-CCCCCCCC-------------ChHHHHHHHHHccCcCcEEEEEeC
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNG-TSAPPVEF-------------VRKDVLLAARLILSDFGIFVMNVI  407 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g-~s~Pp~~f-------------~~~efl~~~~~~L~~~Gilv~N~~  407 (478)
                                    ...+||.|++|+..+-.  | +.--|...             ++.+.|.++.+.|++||.+|.-+.
T Consensus       168 --------------~~~~fd~IL~DaPCSg~--G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTC  231 (284)
T d1sqga2         168 --------------GEQQFDRILLDAPCSAT--GVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC  231 (284)
T ss_dssp             --------------TTCCEEEEEEECCCCCG--GGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred             --------------ccccccEEEEecccccc--CccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeee
Confidence                          35679999999976532  2 21112111             467888999999999999998888


Q ss_pred             CCCchHHHHHHHHHHHhcCccEEEe
Q 038592          408 PPNRSFYDMLIQEFRDVFQELYEID  432 (478)
Q Consensus       408 ~~~~~~~~~v~~~l~~vF~~v~~~~  432 (478)
                      +-+++--+.+++.+-+-++....++
T Consensus       232 S~~~~ENE~vv~~~l~~~~~~~~~~  256 (284)
T d1sqga2         232 SVLPEENSLQIKAFLQRTADAELCE  256 (284)
T ss_dssp             CCCGGGTHHHHHHHHHHCTTCEECS
T ss_pred             cCchhhCHHHHHHHHHhCCCcEEec
Confidence            7766666677777777777654443

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.56  E-value=4.6e-05  Score=68.83  Aligned_cols=118  Identities=19%  Similarity=0.229  Sum_probs=69.3

Q ss_pred             CCCeEEEEeCchhH----HHHHHHhhC-----CCEEEEEECChHHHHHHHH------------------hcCCCC-CCCe
Q 038592          262 FRPKALCVGVGGGA----LVSFLRTQL-----DFEVVGVEMDEVVLRVARQ------------------YFGLED-GEFL  313 (478)
Q Consensus       262 ~~~~VLvIGlGgG~----L~~~L~~~~-----~~~V~~VEiDp~Vl~vA~~------------------~Fg~~~-d~rl  313 (478)
                      .+.||+.+|||+|-    +++.+.+..     .++|++.|||+..++.|++                  ||.-.. ....
T Consensus        24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~  103 (193)
T d1af7a2          24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  103 (193)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence            36799999999994    778777652     2589999999999999974                  332111 1112


Q ss_pred             EEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 038592          314 QVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAAR  393 (478)
Q Consensus       314 ~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~  393 (478)
                      ...+.+.+...-.                 ...++..........+||+|++=    ...  +.-.++  .....++.++
T Consensus       104 ~~~~~~~~~~~v~-----------------~~~~~~~~~~~~~~~~fDvI~CR----NVL--iYf~~~--~~~~vl~~l~  158 (193)
T d1af7a2         104 LVRVRQELANYVE-----------------FSSVNLLEKQYNVPGPFDAIFCR----NVM--IYFDKT--TQEDILRRFV  158 (193)
T ss_dssp             EEEECHHHHTTEE-----------------EEECCTTCSSCCCCCCEEEEEEC----SSG--GGSCHH--HHHHHHHHHG
T ss_pred             eeehHHHHHHHHH-----------------HhhhhccccccCCCCCccEEEee----hhH--HhcCHH--HHHHHHHHHH
Confidence            2233332221100                 00111111112245789999991    110  000111  2368899999


Q ss_pred             HccCcCcEEEE
Q 038592          394 LILSDFGIFVM  404 (478)
Q Consensus       394 ~~L~~~Gilv~  404 (478)
                      +.|+|||+|++
T Consensus       159 ~~L~pGG~L~l  169 (193)
T d1af7a2         159 PLLKPDGLLFA  169 (193)
T ss_dssp             GGEEEEEEEEE
T ss_pred             HHhCCCcEEEE
Confidence            99999999885

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=97.48  E-value=3.2e-05  Score=72.29  Aligned_cols=97  Identities=20%  Similarity=0.321  Sum_probs=63.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhh-----CCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHH--HHHHHHhhhcCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQ-----LDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIE--FLEKLARQIVGKN  335 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~-----~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~--~l~~~~~~~~~~~  335 (478)
                      |++||.||.+.|+.+.++...     .+.+|.++|+|+.....+..     ..++++++.+|..+  .+++.        
T Consensus        81 Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~-----~~~~I~~i~gDs~~~~~~~~l--------  147 (232)
T d2bm8a1          81 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS-----DMENITLHQGDCSDLTTFEHL--------  147 (232)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG-----GCTTEEEEECCSSCSGGGGGG--------
T ss_pred             CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc-----cccceeeeecccccHHHHHHH--------
Confidence            789999999988766555543     25799999999865443322     34789999999753  22211        


Q ss_pred             CCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          336 PDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                          ....+|.||+|.+....         + .-.+ + .+...|++||++++
T Consensus       148 --------------------~~~~~dlIfID~~H~~~---------~-v~~~-~-~~~~lLk~GG~iIv  184 (232)
T d2bm8a1         148 --------------------REMAHPLIFIDNAHANT---------F-NIMK-W-AVDHLLEEGDYFII  184 (232)
T ss_dssp             --------------------SSSCSSEEEEESSCSSH---------H-HHHH-H-HHHHTCCTTCEEEE
T ss_pred             --------------------HhcCCCEEEEcCCcchH---------H-HHHH-H-HHhcccCcCCEEEE
Confidence                                24458999998543211         1 1122 2 24579999999987

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.41  E-value=0.00038  Score=67.47  Aligned_cols=132  Identities=19%  Similarity=0.180  Sum_probs=93.2

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.+..|-|+=+..+....  ...|+++|+++.-++..++.+.-..-.++.+...|+..+-                
T Consensus       117 g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~----------------  180 (313)
T d1ixka_         117 GEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIG----------------  180 (313)
T ss_dssp             TCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGG----------------
T ss_pred             cceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccc----------------
Confidence            4589999999998777777765  4799999999999988775443212356778888887651                


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCC-CCCCC-------------CChHHHHHHHHHccCcCcEEEEEe
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTS-APPVE-------------FVRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s-~Pp~~-------------f~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                    .....||.|++|+..+..  |+. --|..             -++.+.|.++.+.|++||.+|.-+
T Consensus       181 --------------~~~~~fD~ILvDaPCSg~--G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsT  244 (313)
T d1ixka_         181 --------------ELNVEFDKILLDAPCTGS--GTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYST  244 (313)
T ss_dssp             --------------GGCCCEEEEEEECCTTST--TTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             --------------cccccccEEEEccccccC--CceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEee
Confidence                          135679999999976532  321 11211             145778889999999999999888


Q ss_pred             CCCCchHHHHHHHHHHHhcC
Q 038592          407 IPPNRSFYDMLIQEFRDVFQ  426 (478)
Q Consensus       407 ~~~~~~~~~~v~~~l~~vF~  426 (478)
                      .+-.++--+.++..+-+-++
T Consensus       245 CSl~~eENE~VV~~~L~~~~  264 (313)
T d1ixka_         245 CSLEPEENEFVIQWALDNFD  264 (313)
T ss_dssp             SCCCGGGTHHHHHHHHHHSS
T ss_pred             ccCChHhHHHHHHHHHhcCC
Confidence            77766555666666666654

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.41  E-value=0.00016  Score=67.77  Aligned_cols=94  Identities=14%  Similarity=0.106  Sum_probs=65.1

Q ss_pred             CCeEEEEeCchhHHHHHHHhh-CCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQ-LDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~-~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      -.+||.||+|.|.++..+.+. ++.++++.|+ |.|++.+      ...+|++++.+|.++                   
T Consensus        82 ~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~------~~~~ri~~~~gd~~~-------------------  135 (244)
T d1fp1d2          82 ISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENA------PPLSGIEHVGGDMFA-------------------  135 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC------CCCTTEEEEECCTTT-------------------
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhcc------CCCCCeEEecCCccc-------------------
Confidence            578999999999988777665 5799999998 5555422      135789999999642                   


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                    +....|++++----.+    +  |.+  .....|+++++.|+|||.+++
T Consensus       136 --------------~~p~~D~~~l~~vLh~----~--~de--~~~~iL~~~~~aL~pgg~llI  176 (244)
T d1fp1d2         136 --------------SVPQGDAMILKAVCHN----W--SDE--KCIEFLSNCHKALSPNGKVII  176 (244)
T ss_dssp             --------------CCCCEEEEEEESSGGG----S--CHH--HHHHHHHHHHHHEEEEEEEEE
T ss_pred             --------------ccccceEEEEehhhhh----C--CHH--HHHHHHHHHHHHcCCCcEEEE
Confidence                          1234699887210000    0  111  235789999999999997776

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.31  E-value=0.00034  Score=62.74  Aligned_cols=114  Identities=20%  Similarity=0.172  Sum_probs=79.3

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ...++...+|+|+-+..+.+. +.+|.++|.||++++.|++.+    ++++.++.++--++-+.+..             
T Consensus        19 g~~~vD~T~G~GGhs~~iL~~-~~~viaiD~D~~ai~~a~~~~----~~~~~~~~~~f~~~~~~l~~-------------   80 (182)
T d1wg8a2          19 GGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKGLH----LPGLTVVQGNFRHLKRHLAA-------------   80 (182)
T ss_dssp             TCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHTC----CTTEEEEESCGGGHHHHHHH-------------
T ss_pred             CCEEEEeCCCCcHHHHHHhcc-cCcEEEEhhhhhHHHHHhhcc----ccceeEeehHHHHHHHHHHH-------------
Confidence            457889999999888777775 679999999999999998753    46899998877665333211             


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC-ChHHHHHHHHHccCcCcEEEEEeCC
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF-VRKDVLLAARLILSDFGIFVMNVIP  408 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f-~~~efl~~~~~~L~~~Gilv~N~~~  408 (478)
                                  ....++|.|+.|+--+..  .+-.|...| .....|....+.|+++|.+++....
T Consensus        81 ------------~~~~~vdgIl~DLGvSs~--qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fh  133 (182)
T d1wg8a2          81 ------------LGVERVDGILADLGVSSF--HLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFH  133 (182)
T ss_dssp             ------------TTCSCEEEEEEECSCCHH--HHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred             ------------cCCCccCEEEEEccCCHH--HhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecc
Confidence                        134679999999832110  000111111 1244788899999999999976653

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.30  E-value=0.00013  Score=70.68  Aligned_cols=132  Identities=16%  Similarity=0.128  Sum_probs=83.1

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC------CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL------DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNP  336 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~------~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~  336 (478)
                      ..+||..|+|+|++...+.+++      ..++.++|+|+.++++|+....+. +....+..+|....             
T Consensus       118 ~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~-~~~~~~~~~d~~~~-------------  183 (328)
T d2f8la1         118 NVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ-RQKMTLLHQDGLAN-------------  183 (328)
T ss_dssp             EEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH-TCCCEEEESCTTSC-------------
T ss_pred             CCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHh-hhhhhhhccccccc-------------
Confidence            4689999999999887776542      258999999999999998765433 23456666665432             


Q ss_pred             CCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCC-------CCCC-CCCCCCCChHHHHHHHHHccCcCcEEEEEeCC
Q 038592          337 DSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDA-------RNGT-SAPPVEFVRKDVLLAARLILSDFGIFVMNVIP  408 (478)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~-------~~g~-s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~  408 (478)
                                        ....+||+|+.+..=+-.       .... ..........-|++.+.+.|+++|.+++-+.+
T Consensus       184 ------------------~~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~  245 (328)
T d2f8la1         184 ------------------LLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPD  245 (328)
T ss_dssp             ------------------CCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred             ------------------cccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecC
Confidence                              145789999997421100       0000 00111123456999999999999987765543


Q ss_pred             C--CchHHHHHHHHHHHhcC
Q 038592          409 P--NRSFYDMLIQEFRDVFQ  426 (478)
Q Consensus       409 ~--~~~~~~~v~~~l~~vF~  426 (478)
                      .  .......+.+.|.+.|.
T Consensus       246 ~~l~~~~~~~lR~~L~~~~~  265 (328)
T d2f8la1         246 AMFGTSDFAKVDKFIKKNGH  265 (328)
T ss_dssp             GGGGSTTHHHHHHHHHHHEE
T ss_pred             ccccCchhHHHHHHHHhCCc
Confidence            2  12223344555666664

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=97.27  E-value=2.7e-05  Score=73.38  Aligned_cols=58  Identities=17%  Similarity=0.293  Sum_probs=51.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHH
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEF  323 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~  323 (478)
                      ..+||.||.|.|+|+..|.+. +.+|++||+|+.+++.+++.|+  ..++++++.+|++++
T Consensus        30 ~d~VLEIGpG~G~LT~~L~~~-~~~v~aIE~D~~l~~~l~~~~~--~~~n~~ii~~D~l~~   87 (245)
T d1yuba_          30 TDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQF   87 (245)
T ss_dssp             SEEEEECSCCCSSCSHHHHHH-SSEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTT
T ss_pred             CCeEEEECCCccHHHHHHHhh-cCceeEeeecccchhhhhhhhh--hccchhhhhhhhhcc
Confidence            458999999999999999886 5799999999999999887765  346899999999986

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.00056  Score=65.56  Aligned_cols=139  Identities=11%  Similarity=0.123  Sum_probs=92.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||.+..|-|+-+..|....  ..+|+++|+++.-++..++.+.-..-.++++...|+..+-..              
T Consensus        95 g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~--------------  160 (293)
T d2b9ea1          95 GSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPS--------------  160 (293)
T ss_dssp             TCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTT--------------
T ss_pred             cceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhccc--------------
Confidence            4689999999998777777664  479999999999988888765432235689999999876211              


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCC-CCCC-------------C--ChHHHHHHHHHccCcCcEEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSA-PPVE-------------F--VRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~-Pp~~-------------f--~~~efl~~~~~~L~~~Gilv~  404 (478)
                                   .....+||.|++|+..+..  |+.- -|..             +  ++...+..+. .|++||.+|.
T Consensus       161 -------------~~~~~~fD~VL~DaPCSg~--G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvY  224 (293)
T d2b9ea1         161 -------------DPRYHEVHYILLDPSCSGS--GMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVY  224 (293)
T ss_dssp             -------------CGGGTTEEEEEECCCCCC--------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEE
T ss_pred             -------------ccccceeeEEeecCcccch--hhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEE
Confidence                         0123579999999976532  2210 0110             1  2233444444 4789999988


Q ss_pred             EeCCCCchHHHHHHHHHHHhcCccEEE
Q 038592          405 NVIPPNRSFYDMLIQEFRDVFQELYEI  431 (478)
Q Consensus       405 N~~~~~~~~~~~v~~~l~~vF~~v~~~  431 (478)
                      -+.+-.++--+.+++.+-+-++..+.+
T Consensus       225 sTCSl~~~ENe~vV~~~L~~~~~~~~l  251 (293)
T d2b9ea1         225 STCSLCQEENEDVVRDALQQNPGAFRL  251 (293)
T ss_dssp             EESCCCGGGTHHHHHHHHTTSTTTEEE
T ss_pred             eeccCChhHhHHHHHHHHHhCCCCEEe
Confidence            777776666667777777777765544

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=97.22  E-value=7.7e-05  Score=70.48  Aligned_cols=58  Identities=19%  Similarity=0.120  Sum_probs=50.6

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHH
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEF  323 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~  323 (478)
                      ...||.||.|.|+|+..|.+. ..+|++||+|+.+++..++.|.  ..++++++.+|++++
T Consensus        22 ~d~vlEIGpG~G~LT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~--~~~~~~ii~~D~l~~   79 (252)
T d1qyra_          22 GQAMVEIGPGLAALTEPVGER-LDQLTVIELDRDLAARLQTHPF--LGPKLTIYQQDAMTF   79 (252)
T ss_dssp             TCCEEEECCTTTTTHHHHHTT-CSCEEEECCCHHHHHHHHTCTT--TGGGEEEECSCGGGC
T ss_pred             CCEEEEECCCchHHHHHHHcc-CCceEEEEeccchhHHHHHHhh--hccchhHHhhhhhhh
Confidence            468999999999999999875 5799999999999999887553  347899999999975

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.20  E-value=0.00081  Score=58.29  Aligned_cols=110  Identities=20%  Similarity=0.243  Sum_probs=73.1

Q ss_pred             CeEEEEeCc--hhHHHHHHHhh-CCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          264 PKALCVGVG--GGALVSFLRTQ-LDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       264 ~~VLvIGlG--gG~L~~~L~~~-~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ++|++||+|  ||++++.|.+. +..+|.++|.+++.++.|++. +..     .....+....                 
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~-~~~-----~~~~~~~~~~-----------------   58 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL-GII-----DEGTTSIAKV-----------------   58 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT-TSC-----SEEESCGGGG-----------------
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh-hcc-----hhhhhhhhhh-----------------
Confidence            479999999  78899999876 367999999999999999875 221     0011111100                 


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHH
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQE  420 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~  420 (478)
                                     .....|+|++-+           ||.  ...+++..++..++++ .+++.+.+......+.+-+.
T Consensus        59 ---------------~~~~~dlIila~-----------p~~--~~~~vl~~l~~~~~~~-~ii~d~~s~k~~~~~~~~~~  109 (171)
T d2g5ca2          59 ---------------EDFSPDFVMLSS-----------PVR--TFREIAKKLSYILSED-ATVTDQGSVKGKLVYDLENI  109 (171)
T ss_dssp             ---------------GGTCCSEEEECS-----------CHH--HHHHHHHHHHHHSCTT-CEEEECCSCCTHHHHHHHHH
T ss_pred             ---------------hccccccccccC-----------Cch--hhhhhhhhhhcccccc-ccccccccccHHHHHHHHHh
Confidence                           234589999932           332  3477889999999875 55566776655555555544


Q ss_pred             HHHhc
Q 038592          421 FRDVF  425 (478)
Q Consensus       421 l~~vF  425 (478)
                      +..-|
T Consensus       110 ~~~~~  114 (171)
T d2g5ca2         110 LGKRF  114 (171)
T ss_dssp             HGGGE
T ss_pred             hcccc
Confidence            54433

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.001  Score=63.37  Aligned_cols=60  Identities=27%  Similarity=0.264  Sum_probs=52.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC-CCCCCeEEEEchHHHH
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL-EDGEFLQVSVGDAIEF  323 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~-~~d~rl~v~v~Dg~~~  323 (478)
                      ...||.||.|.|+|+..|.+. +.+|++||+|+.+++..++.|.- ....+++++.+|++++
T Consensus        22 ~d~VlEIGPG~G~LT~~Ll~~-~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~   82 (278)
T d1zq9a1          22 TDVVLEVGPGTGNMTVKLLEK-AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT   82 (278)
T ss_dssp             TCEEEEECCTTSTTHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS
T ss_pred             CCEEEEECCCchHHHHHHHhc-CCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhh
Confidence            458999999999999999987 57999999999999999988753 2347899999999876

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.89  E-value=0.00054  Score=63.98  Aligned_cols=94  Identities=12%  Similarity=0.096  Sum_probs=64.7

Q ss_pred             CCeEEEEeCchhHHHHHHHhh-CCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQ-LDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~-~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||+|.|.++..+.+. ++.++++.|+ |.|++.|      ...+|++++.+|..+                   
T Consensus        81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~------~~~~rv~~~~gD~f~-------------------  134 (244)
T d1fp2a2          81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENL------SGSNNLTYVGGDMFT-------------------  134 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC------CCBTTEEEEECCTTT-------------------
T ss_pred             ceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhC------cccCceEEEecCccc-------------------
Confidence            468999999999988777665 5799999999 5565533      245799999999643                   


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcC---cEEEE
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDF---GIFVM  404 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~---Gilv~  404 (478)
                                    +...+|++++---=.+    +   +.+ .....|+++++.|+||   |.+++
T Consensus       135 --------------~~p~aD~~~l~~vLHd----w---~d~-~~~~iL~~~~~al~pgg~~~~lli  178 (244)
T d1fp2a2         135 --------------SIPNADAVLLKYILHN----W---TDK-DCLRILKKCKEAVTNDGKRGKVTI  178 (244)
T ss_dssp             --------------CCCCCSEEEEESCGGG----S---CHH-HHHHHHHHHHHHHSGGGCCCEEEE
T ss_pred             --------------CCCCCcEEEEEeeccc----C---ChH-HHHHHHHHHHHHcCcccCCcEEEE
Confidence                          1235799988210000    0   000 2357899999999998   54444

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.87  E-value=0.00079  Score=60.31  Aligned_cols=104  Identities=21%  Similarity=0.249  Sum_probs=69.7

Q ss_pred             CCeEEEEeCchhHHHHHHHhh-C-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQ-L-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~-~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+||..|+|+|.+...+.+. . ...+.++|+|+..++++         .+..++.+|...+                 
T Consensus        20 ~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~---------~~~~~~~~~~~~~-----------------   73 (223)
T d2ih2a1          20 GGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILADFLLW-----------------   73 (223)
T ss_dssp             TCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESCGGGC-----------------
T ss_pred             cCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc---------ccceeeeeehhcc-----------------
Confidence            469999999999977666554 4 47899999999754433         3568888887654                 


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCC--------------------CCCChHHHHHHHHHccCcCc
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPP--------------------VEFVRKDVLLAARLILSDFG  400 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp--------------------~~f~~~efl~~~~~~L~~~G  400 (478)
                                    ....+||+|+.+..-.... ..+-.+                    ..-+...|++.+.+.|++||
T Consensus        74 --------------~~~~~fd~ii~npP~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G  138 (223)
T d2ih2a1          74 --------------EPGEAFDLILGNPPYGIVG-EASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGG  138 (223)
T ss_dssp             --------------CCSSCEEEEEECCCCCCBS-CTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEE
T ss_pred             --------------ccccccceecccCcccccc-ccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCC
Confidence                          1456899999864321100 000000                    11134678999999999999


Q ss_pred             EEEEEeC
Q 038592          401 IFVMNVI  407 (478)
Q Consensus       401 ilv~N~~  407 (478)
                      .+++=+.
T Consensus       139 ~~~~I~p  145 (223)
T d2ih2a1         139 VLVFVVP  145 (223)
T ss_dssp             EEEEEEE
T ss_pred             ceEEEEe
Confidence            9876553

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.86  E-value=0.01  Score=51.02  Aligned_cols=97  Identities=15%  Similarity=0.163  Sum_probs=65.6

Q ss_pred             CCeEEEEeCc-hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEE----chHHHHHHHHHhhhcCCCCC
Q 038592          263 RPKALCVGVG-GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSV----GDAIEFLEKLARQIVGKNPD  337 (478)
Q Consensus       263 ~~~VLvIGlG-gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v----~Dg~~~l~~~~~~~~~~~~~  337 (478)
                      ..+|||+|+| .|.++..+.+..+.+|.++|.++.-++.|+++..-     ..+..    .|..++.+.....       
T Consensus        27 g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~-----~~~~~~~~~~~~~~~~~~~~~~-------   94 (170)
T d1e3ja2          27 GTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGAD-----VTLVVDPAKEEESSIIERIRSA-------   94 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS-----EEEECCTTTSCHHHHHHHHHHH-------
T ss_pred             CCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCc-----EEEeccccccccchhhhhhhcc-------
Confidence            4689999988 45666666677789999999999999999986431     11111    1333333332211       


Q ss_pred             CCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592          338 SFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                        ....+|+||--+  +              .+..++.+.+.|+++|.+++-
T Consensus        95 ------------------~g~g~D~vid~~--g--------------~~~~~~~a~~~~~~~G~iv~~  128 (170)
T d1e3ja2          95 ------------------IGDLPNVTIDCS--G--------------NEKCITIGINITRTGGTLMLV  128 (170)
T ss_dssp             ------------------SSSCCSEEEECS--C--------------CHHHHHHHHHHSCTTCEEEEC
T ss_pred             ------------------cccCCceeeecC--C--------------ChHHHHHHHHHHhcCCceEEE
Confidence                              356789886622  1              146788889999999998863

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.75  E-value=0.0032  Score=54.14  Aligned_cols=94  Identities=16%  Similarity=0.232  Sum_probs=63.0

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+|||+|.|+ |.++..+.+..+.+|.++|.++.-++.|+++ |..  .-+.....|..+.+.+.              
T Consensus        28 g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~-Ga~--~~i~~~~~~~~~~~~~~--------------   90 (166)
T d1llua2          28 GQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKL-GAS--LTVNARQEDPVEAIQRD--------------   90 (166)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT-TCS--EEEETTTSCHHHHHHHH--------------
T ss_pred             CCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhcc-Ccc--ccccccchhHHHHHHHh--------------
Confidence            46899999884 5566667777789999999999999999875 532  11111123444544431              


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                     ...+|.++.+.-                ..+.++.+.+.|+++|.+++
T Consensus        91 ---------------~~g~~~~i~~~~----------------~~~~~~~~~~~l~~~G~iv~  122 (166)
T d1llua2          91 ---------------IGGAHGVLVTAV----------------SNSAFGQAIGMARRGGTIAL  122 (166)
T ss_dssp             ---------------HSSEEEEEECCS----------------CHHHHHHHHTTEEEEEEEEE
T ss_pred             ---------------hcCCcccccccc----------------cchHHHHHHHHhcCCcEEEE
Confidence                           123566665321                14567888899999999885

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=96.74  E-value=0.02  Score=50.59  Aligned_cols=131  Identities=21%  Similarity=0.258  Sum_probs=87.9

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHH--HHHHhhhcCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFL--EKLARQIVGKNPDS  338 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l--~~~~~~~~~~~~~~  338 (478)
                      ..+||.||++-|++..++.+..  ...|.+||+.|.           ..-+...++.+|..+.-  ......        
T Consensus        23 ~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i~~~~~~~~d~~~~~~~~~~~~~--------   83 (180)
T d1ej0a_          23 GMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPIVGVDFLQGDFRDELVMKALLER--------   83 (180)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCCTTEEEEESCTTSHHHHHHHHHH--------
T ss_pred             CCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------cccCCceEeecccccchhhhhhhhh--------
Confidence            4689999999999999988764  379999998762           23456788888775422  111111        


Q ss_pred             CCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC----ChHHHHHHHHHccCcCcEEEEEeCCCCchHH
Q 038592          339 FGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF----VRKDVLLAARLILSDFGIFVMNVIPPNRSFY  414 (478)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f----~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~  414 (478)
                                      ....++|+|+.|.- .+.+ |.... .+.    +....+..+.+.|++||.|++=+... .. .
T Consensus        84 ----------------~~~~~~DlVlSD~a-p~~s-g~~~~-d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g-~~-~  142 (180)
T d1ej0a_          84 ----------------VGDSKVQVVMSDMA-PNMS-GTPAV-DIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG-EG-F  142 (180)
T ss_dssp             ----------------HTTCCEEEEEECCC-CCCC-SCHHH-HHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS-TT-H
T ss_pred             ----------------ccCcceeEEEeccc-chhc-ccchh-HHHHHHHHHHHHHHhhhhccCCCCcEEEEEecC-cc-H
Confidence                            14567999999853 2222 21100 000    22445666778999999999977643 22 4


Q ss_pred             HHHHHHHHHhcCccEEEee
Q 038592          415 DMLIQEFRDVFQELYEIDV  433 (478)
Q Consensus       415 ~~v~~~l~~vF~~v~~~~v  433 (478)
                      ..++..|+..|..|..++.
T Consensus       143 ~~l~~~l~~~F~~V~~~KP  161 (180)
T d1ej0a_         143 DEYLREIRSLFTKVKVRKP  161 (180)
T ss_dssp             HHHHHHHHHHEEEEEEECC
T ss_pred             HHHHHHHHhhcCEEEEECC
Confidence            5688999999999988875

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.56  E-value=0.014  Score=52.04  Aligned_cols=109  Identities=16%  Similarity=0.090  Sum_probs=70.3

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCC-CEEEEEECChHHHHHHHHhcCCCCCCCeEEE---EchHHHHHHHHHhhhcCCCCC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLD-FEVVGVEMDEVVLRVARQYFGLEDGEFLQVS---VGDAIEFLEKLARQIVGKNPD  337 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~---v~Dg~~~l~~~~~~~~~~~~~  337 (478)
                      ..+|||+|+|+ |.++..+.+..+ .+|.++|.++.-++.|+++ |..     .++   ..|..+.+.+..         
T Consensus        26 G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~-Ga~-----~~~~~~~~~~~~~i~~~t---------   90 (195)
T d1kola2          26 GSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ-GFE-----IADLSLDTPLHEQIAALL---------   90 (195)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT-TCE-----EEETTSSSCHHHHHHHHH---------
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc-ccc-----EEEeCCCcCHHHHHHHHh---------
Confidence            46999999997 556666666665 5999999999999999886 421     122   245666665532         


Q ss_pred             CCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592          338 SFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                        ....+|++|-.+ ..+............-..+.++.+.+.++++|.+++-
T Consensus        91 ------------------~g~g~D~vid~v-G~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~  139 (195)
T d1kola2          91 ------------------GEPEVDCAVDAV-GFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP  139 (195)
T ss_dssp             ------------------SSSCEEEEEECC-CTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred             ------------------CCCCcEEEEECc-cccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence                              345699988532 2221110000011123568999999999999988853

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.56  E-value=0.0054  Score=53.65  Aligned_cols=99  Identities=18%  Similarity=0.210  Sum_probs=65.0

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+|||+|.|+ |.++..+.++.+. +|.++|.+++-++.|+++ |..  .-+.....|..++.++..+.          
T Consensus        29 G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l-Ga~--~vi~~~~~~~~~~~~~i~~~----------   95 (182)
T d1vj0a2          29 GKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI-GAD--LTLNRRETSVEERRKAIMDI----------   95 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT-TCS--EEEETTTSCHHHHHHHHHHH----------
T ss_pred             CCEEEEECCCccchhheecccccccccccccccccccccccccc-cce--EEEeccccchHHHHHHHHHh----------
Confidence            46999999884 6777777777876 899999999999999774 531  11111123444444332221          


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                    .....+|+||--+  +.              +..++.+.+.|+++|.+++
T Consensus        96 --------------~~~~g~Dvvid~v--G~--------------~~~~~~a~~~l~~~G~iv~  129 (182)
T d1vj0a2          96 --------------THGRGADFILEAT--GD--------------SRALLEGSELLRRGGFYSV  129 (182)
T ss_dssp             --------------TTTSCEEEEEECS--SC--------------TTHHHHHHHHEEEEEEEEE
T ss_pred             --------------hCCCCceEEeecC--Cc--------------hhHHHHHHHHhcCCCEEEE
Confidence                          1345699988522  10              2357888899999999874

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=96.53  E-value=0.0031  Score=57.41  Aligned_cols=116  Identities=15%  Similarity=0.085  Sum_probs=82.2

Q ss_pred             hcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhh-CCCEEEEEECChHHHHHHH---HhcCCCCCCCe
Q 038592          238 VYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQ-LDFEVVGVEMDEVVLRVAR---QYFGLEDGEFL  313 (478)
Q Consensus       238 ~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~-~~~~V~~VEiDp~Vl~vA~---~~Fg~~~d~rl  313 (478)
                      -|.+-++.++.++.. +       .+.+++.||.|+|.=+.-|+-+ ++.+++.||-...=+...+   +-+++   +++
T Consensus        49 ~~~rHi~DSl~~~~~-~-------~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L---~nv  117 (207)
T d1jsxa_          49 MLVRHILDSIVVAPY-L-------QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL---ENI  117 (207)
T ss_dssp             HHHHHHHHHHHHGGG-C-------CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC---SSE
T ss_pred             HHHHHhcchHhhhhh-h-------cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCC---cce
Confidence            345666676665542 1       1468999999999655444444 5799999999998766554   34554   469


Q ss_pred             EEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 038592          314 QVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAAR  393 (478)
Q Consensus       314 ~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~  393 (478)
                      +++.+.+.++-                               ...+||+|+.-++++              -..++..++
T Consensus       118 ~v~~~R~E~~~-------------------------------~~~~fD~V~sRA~~~--------------~~~ll~~~~  152 (207)
T d1jsxa_         118 EPVQSRVEEFP-------------------------------SEPPFDGVISRAFAS--------------LNDMVSWCH  152 (207)
T ss_dssp             EEEECCTTTSC-------------------------------CCSCEEEEECSCSSS--------------HHHHHHHHT
T ss_pred             eeeccchhhhc-------------------------------cccccceehhhhhcC--------------HHHHHHHHH
Confidence            99998887651                               356799998855431              256889999


Q ss_pred             HccCcCcEEEEEeCCC
Q 038592          394 LILSDFGIFVMNVIPP  409 (478)
Q Consensus       394 ~~L~~~Gilv~N~~~~  409 (478)
                      ..++++|.+++--...
T Consensus       153 ~~l~~~g~~~~~KG~~  168 (207)
T d1jsxa_         153 HLPGEQGRFYALKGQM  168 (207)
T ss_dssp             TSEEEEEEEEEEESSC
T ss_pred             HhcCCCcEEEEECCCC
Confidence            9999999998766543

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.52  E-value=0.0029  Score=55.58  Aligned_cols=96  Identities=18%  Similarity=0.263  Sum_probs=65.1

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+|||+|+|+ |.++..+.+..+. +|.++|.++.-++.|+++ |..  .-+...-.|..+.+.+..            
T Consensus        28 g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l-Ga~--~~i~~~~~~~~~~v~~~t------------   92 (174)
T d1jqba2          28 GSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY-GAT--DILNYKNGHIEDQVMKLT------------   92 (174)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH-TCS--EEECGGGSCHHHHHHHHT------------
T ss_pred             CCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh-Ccc--ccccccchhHHHHHHHHh------------
Confidence            46899999986 7777777777775 899999999999999874 531  111111223445454421            


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                     .+..+|+||--+.+                .+.++.+.+.|+++|.+++
T Consensus        93 ---------------~g~G~D~vid~~g~----------------~~~~~~a~~~~~~~G~iv~  125 (174)
T d1jqba2          93 ---------------NGKGVDRVIMAGGG----------------SETLSQAVKMVKPGGIISN  125 (174)
T ss_dssp             ---------------TTSCEEEEEECSSC----------------TTHHHHHHHHEEEEEEEEE
T ss_pred             ---------------hccCcceEEEccCC----------------HHHHHHHHHHHhcCCEEEE
Confidence                           24559988763211                2367788899999999986

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=96.52  E-value=0.00059  Score=64.18  Aligned_cols=77  Identities=18%  Similarity=0.202  Sum_probs=60.2

Q ss_pred             CCCCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcC---CCC------CCCeEEEEchHHHHHHHHHhhh
Q 038592          261 GFRPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFG---LED------GEFLQVSVGDAIEFLEKLARQI  331 (478)
Q Consensus       261 g~~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg---~~~------d~rl~v~v~Dg~~~l~~~~~~~  331 (478)
                      +.+.+||..=+|-|..+..+... +.+|++||-+|.+..+.++-+.   ...      -.|++++.+|+++|+++     
T Consensus        87 ~~~~~VlD~TaGlG~Da~vlA~~-G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~-----  160 (250)
T d2oyra1          87 DYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD-----  160 (250)
T ss_dssp             TBCCCEEETTCTTCHHHHHHHHH-TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTT-----
T ss_pred             CCCCEEEECCCcccHHHHHHHhC-CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhc-----
Confidence            34569999999999999877754 7899999999999887665432   111      13899999999999864     


Q ss_pred             cCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeC
Q 038592          332 VGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDL  367 (478)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv  367 (478)
                                              ....||+|++|-
T Consensus       161 ------------------------~~~~~DvIYlDP  172 (250)
T d2oyra1         161 ------------------------ITPRPQVVYLDP  172 (250)
T ss_dssp             ------------------------CSSCCSEEEECC
T ss_pred             ------------------------cCCCCCEEEECC
Confidence                                    345699999985

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=96.47  E-value=0.0021  Score=62.37  Aligned_cols=111  Identities=22%  Similarity=0.178  Sum_probs=77.8

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ..+||.+-+|.|.++..|.+. ..+|++||+++..++.|++......-.+++++.+|..+.+....              
T Consensus       213 ~~~vlDLycG~G~fsl~La~~-~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~--------------  277 (358)
T d1uwva2         213 EDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQP--------------  277 (358)
T ss_dssp             TCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSG--------------
T ss_pred             CceEEEecccccccchhcccc-ccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhh--------------
Confidence            468999999999999988764 46999999999999999987655445679999999887653311              


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHH
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDM  416 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~  416 (478)
                                  ....+||+||+|-    +..|        .. ++++.+.+. ++.=  ++.+.|....+.+.
T Consensus       278 ------------~~~~~~d~vilDP----PR~G--------~~-~~~~~l~~~-~~~~--ivYVSCnp~TlaRD  323 (358)
T d1uwva2         278 ------------WAKNGFDKVLLDP----ARAG--------AA-GVMQQIIKL-EPIR--IVYVSCNPATLARD  323 (358)
T ss_dssp             ------------GGTTCCSEEEECC----CTTC--------CH-HHHHHHHHH-CCSE--EEEEESCHHHHHHH
T ss_pred             ------------hhhccCceEEeCC----CCcc--------HH-HHHHHHHHc-CCCE--EEEEeCCHHHHHHH
Confidence                        1356799999973    2222        33 467776654 4433  44566653444333

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.011  Score=51.11  Aligned_cols=99  Identities=22%  Similarity=0.286  Sum_probs=64.7

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+|||+|+|+ |.++..+.+..+. +|.++|.++.-++.|+++ |..  ..+.....|..+..+.....          
T Consensus        27 gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~-Ga~--~~~~~~~~~~~~~~~~~~~~----------   93 (171)
T d1pl8a2          27 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI-GAD--LVLQISKESPQEIARKVEGQ----------   93 (171)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT-TCS--EEEECSSCCHHHHHHHHHHH----------
T ss_pred             CCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh-CCc--cccccccccccccccccccc----------
Confidence            46899999985 4455566666665 899999999999999875 532  11111112333333332211          


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                     .+..+|+||--  .+              .+..++.+.+.++++|.+++-
T Consensus        94 ---------------~g~g~Dvvid~--~G--------------~~~~~~~a~~~~~~gG~iv~~  127 (171)
T d1pl8a2          94 ---------------LGCKPEVTIEC--TG--------------AEASIQAGIYATRSGGTLVLV  127 (171)
T ss_dssp             ---------------HTSCCSEEEEC--SC--------------CHHHHHHHHHHSCTTCEEEEC
T ss_pred             ---------------CCCCceEEEec--cC--------------CchhHHHHHHHhcCCCEEEEE
Confidence                           34578987762  11              156889999999999988863

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.36  E-value=0.015  Score=50.47  Aligned_cols=95  Identities=14%  Similarity=0.210  Sum_probs=64.5

Q ss_pred             CCeEEEEeCchhH-HHHHHHhhCC-CEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGGA-LVSFLRTQLD-FEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG~-L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+|||+|+|+-+ ++..+.+..+ ..|.++|.++.-++.|+++ |..  .-+.....|..+.+++.             
T Consensus        29 g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~-Ga~--~~i~~~~~~~~~~i~~~-------------   92 (174)
T d1f8fa2          29 ASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL-GAT--HVINSKTQDPVAAIKEI-------------   92 (174)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH-TCS--EEEETTTSCHHHHHHHH-------------
T ss_pred             CCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc-CCe--EEEeCCCcCHHHHHHHH-------------
Confidence            4689999998543 4444444444 5888999999999999875 542  11111224566666653             


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                     .+..+|+||-.+-                ..+.++.+.+.|+++|.+++
T Consensus        93 ---------------t~gg~D~vid~~G----------------~~~~~~~~~~~~~~~G~i~~  125 (174)
T d1f8fa2          93 ---------------TDGGVNFALESTG----------------SPEILKQGVDALGILGKIAV  125 (174)
T ss_dssp             ---------------TTSCEEEEEECSC----------------CHHHHHHHHHTEEEEEEEEE
T ss_pred             ---------------cCCCCcEEEEcCC----------------cHHHHHHHHhcccCceEEEE
Confidence                           3447999887321                25688899999999999885

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.21  E-value=0.0097  Score=52.28  Aligned_cols=103  Identities=14%  Similarity=0.148  Sum_probs=70.1

Q ss_pred             CCCeEEEEeCc-hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          262 FRPKALCVGVG-GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       262 ~~~~VLvIGlG-gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      .|.+|+|||.| .|.-+......++.+|++.|.+++.++..+..|+    .+++....+-... ++..            
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~----~~~~~~~~~~~~l-~~~~------------   93 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFG----SRVELLYSNSAEI-ETAV------------   93 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG----GGSEEEECCHHHH-HHHH------------
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhc----ccceeehhhhhhH-HHhh------------
Confidence            37899999999 4555555666679999999999999998887775    3456666655444 3322            


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                       ...|+||--+--+-      .+++.+.+++.++    .++||.+ ++.+...
T Consensus        94 -----------------~~aDivI~aalipG------~~aP~lIt~~mv~----~Mk~GSV-IVDvaid  134 (168)
T d1pjca1          94 -----------------AEADLLIGAVLVPG------RRAPILVPASLVE----QMRTGSV-IVDVAVD  134 (168)
T ss_dssp             -----------------HTCSEEEECCCCTT------SSCCCCBCHHHHT----TSCTTCE-EEETTCT
T ss_pred             -----------------ccCcEEEEeeecCC------cccCeeecHHHHh----hcCCCcE-EEEeecC
Confidence                             23799998654322      2466788887665    5566554 4566543

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.08  E-value=0.0017  Score=60.19  Aligned_cols=94  Identities=16%  Similarity=0.112  Sum_probs=62.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhh-CCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGGGALVSFLRTQ-LDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~-~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+||.||+|.|.++..|.+. ++.+++++|+-+. ++.+      ...+|++...+|..+-                  
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~~~------~~~~r~~~~~~d~~~~------------------  136 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IEDA------PSYPGVEHVGGDMFVS------------------  136 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TTTC------CCCTTEEEEECCTTTC------------------
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hhhc------ccCCceEEeccccccc------------------
Confidence            468999999999988877776 5799999999654 3322      2347899998885421                  


Q ss_pred             ccccCCCccCCCCCCCCceeEEEE-eCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMV-DLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIiv-Dv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                     ....|++++ -+...     .  +.+  .....|+++++.|+|||.+++.
T Consensus       137 ---------------~P~ad~~~l~~vlh~-----~--~d~--~~~~iL~~~~~al~pgg~~li~  177 (243)
T d1kyza2         137 ---------------IPKADAVFMKWICHD-----W--SDE--HCLKFLKNCYEALPDNGKVIVA  177 (243)
T ss_dssp             ---------------CCCCSCEECSSSSTT-----S--CHH--HHHHHHHHHHHHCCSSSCEEEE
T ss_pred             ---------------CCCcceEEEEEEeec-----C--CHH--HHHHHHHHHHHhcCCCceEEEE
Confidence                           112344443 11100     0  111  2467999999999999977664

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.08  E-value=0.0039  Score=53.99  Aligned_cols=42  Identities=17%  Similarity=0.153  Sum_probs=35.0

Q ss_pred             CCeEEEEeCc-hhHHHHHHHhhCCCEEEEEECChHHHHHHHHh
Q 038592          263 RPKALCVGVG-GGALVSFLRTQLDFEVVGVEMDEVVLRVARQY  304 (478)
Q Consensus       263 ~~~VLvIGlG-gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~  304 (478)
                      ..+|||+|.| .|.++..+.+..+.+|.+++.+++-++.|+++
T Consensus        28 g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~l   70 (168)
T d1piwa2          28 GKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKM   70 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH
T ss_pred             CCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhcc
Confidence            4699999998 45566666666789999999999999999886

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.95  E-value=0.0034  Score=60.67  Aligned_cols=58  Identities=17%  Similarity=0.157  Sum_probs=51.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCC-CEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHH
Q 038592          263 RPKALCVGVGGGALVSFLRTQLD-FEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEF  323 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~  323 (478)
                      ...||.||-|.|+|+..|.+... .+|++||+|+...+.-++.|.   +++++++.+|+..|
T Consensus        44 ~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~---~~~~~ii~~D~l~~  102 (322)
T d1i4wa_          44 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE---GSPLQILKRDPYDW  102 (322)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT---TSSCEEECSCTTCH
T ss_pred             CCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc---CCCcEEEeCchhhc
Confidence            56899999999999999988754 699999999999999888764   57899999999876

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=95.78  E-value=0.2  Score=45.96  Aligned_cols=139  Identities=14%  Similarity=0.092  Sum_probs=91.4

Q ss_pred             chhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhh-CCCEEEEEECChHHHHH---HHHhcCCCCCC
Q 038592          236 VHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQ-LDFEVVGVEMDEVVLRV---ARQYFGLEDGE  311 (478)
Q Consensus       236 ~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~-~~~~V~~VEiDp~Vl~v---A~~~Fg~~~d~  311 (478)
                      ...|.+-+..++.++.. +.    .....+++.||.|+|.-+.-|.=+ ++.+++.||-+..=+..   +.+-+++   .
T Consensus        49 ~~i~~rHi~DSl~~~~~-~~----~~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L---~  120 (239)
T d1xdza_          49 KEVYLKHFYDSITAAFY-VD----FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL---E  120 (239)
T ss_dssp             HHHHHHTHHHHHGGGGT-SC----GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC---S
T ss_pred             HHHHHHhccchhhhhhh-hc----ccCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCC---C
Confidence            34455666666655432 11    012468999999999755555544 47899999999876665   4455676   4


Q ss_pred             CeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHH
Q 038592          312 FLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLA  391 (478)
Q Consensus       312 rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~  391 (478)
                      ++.++.+.+-++-..                           .....+||+|+.=++++              -..+++.
T Consensus       121 n~~i~~~R~E~~~~~---------------------------~~~~~~~D~v~sRAva~--------------l~~ll~~  159 (239)
T d1xdza_         121 NTTFCHDRAETFGQR---------------------------KDVRESYDIVTARAVAR--------------LSVLSEL  159 (239)
T ss_dssp             SEEEEESCHHHHTTC---------------------------TTTTTCEEEEEEECCSC--------------HHHHHHH
T ss_pred             CcEEEeehhhhcccc---------------------------ccccccceEEEEhhhhC--------------HHHHHHH
Confidence            688999998876321                           01356899999966542              2668999


Q ss_pred             HHHccCcCcEEEEEeCCCCchHHHHHHHHHHH
Q 038592          392 ARLILSDFGIFVMNVIPPNRSFYDMLIQEFRD  423 (478)
Q Consensus       392 ~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l~~  423 (478)
                      +...|+++|.+++--.....+-....-+.++.
T Consensus       160 ~~~~l~~~g~~i~~KG~~~~~El~~a~~~~~~  191 (239)
T d1xdza_         160 CLPLVKKNGLFVALKAASAEEELNAGKKAITT  191 (239)
T ss_dssp             HGGGEEEEEEEEEEECC-CHHHHHHHHHHHHH
T ss_pred             HhhhcccCCEEEEECCCChHHHHHHHHHHHHH
Confidence            99999999999876665433333333444443

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=95.75  E-value=0.0096  Score=51.01  Aligned_cols=93  Identities=22%  Similarity=0.237  Sum_probs=62.5

Q ss_pred             eEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          265 KALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       265 ~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ||.+||+|  |+++++.|.+. +.+|+++|.+++.++.|++. +.. +    . ..|-.+.                   
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~-g~~V~~~d~~~~~~~~a~~~-~~~-~----~-~~~~~~~-------------------   54 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRR-GHYLIGVSRQQSTCEKAVER-QLV-D----E-AGQDLSL-------------------   54 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHT-TSC-S----E-EESCGGG-------------------
T ss_pred             EEEEEeecHHHHHHHHHHHHC-CCEEEEEECCchHHHHHHHh-hcc-c----e-eeeeccc-------------------
Confidence            79999999  78888888654 78999999999999988764 321 0    0 1111111                   


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCch
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRS  412 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~  412 (478)
                                    -...|+||+-+           |+ . ...+.++.+...|+++- +++++.+-...
T Consensus        55 --------------~~~~DiIilav-----------p~-~-~~~~vl~~l~~~l~~~~-iv~~~~s~~~~   96 (165)
T d2f1ka2          55 --------------LQTAKIIFLCT-----------PI-Q-LILPTLEKLIPHLSPTA-IVTDVASVKTA   96 (165)
T ss_dssp             --------------GTTCSEEEECS-----------CH-H-HHHHHHHHHGGGSCTTC-EEEECCSCCHH
T ss_pred             --------------ccccccccccC-----------cH-h-hhhhhhhhhhhhccccc-ceeeccccchH
Confidence                          23479999832           22 2 35678889988888765 55677655433

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.022  Score=49.16  Aligned_cols=95  Identities=18%  Similarity=0.210  Sum_probs=65.6

Q ss_pred             CCeEEEEeC--chhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGV--GGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGl--GgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+|||.|+  |.|.++..+.+..+.+|.++.-+++=.+.++++ |..  .-+...-.|..+.+++..            
T Consensus        29 g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~-Ga~--~vi~~~~~~~~~~i~~~t------------   93 (174)
T d1yb5a2          29 GESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQN-GAH--EVFNHREVNYIDKIKKYV------------   93 (174)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT-TCS--EEEETTSTTHHHHHHHHH------------
T ss_pred             CCEEEEEeccccccccccccccccCccccccccccccccccccc-Ccc--cccccccccHHHHhhhhh------------
Confidence            468999995  356777777888889999999999989999874 532  111111235555554431            


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                     ....+|+|+--                 ...+.++...+.|+++|.+++
T Consensus        94 ---------------~~~g~d~v~d~-----------------~g~~~~~~~~~~l~~~G~iv~  125 (174)
T d1yb5a2          94 ---------------GEKGIDIIIEM-----------------LANVNLSKDLSLLSHGGRVIV  125 (174)
T ss_dssp             ---------------CTTCEEEEEES-----------------CHHHHHHHHHHHEEEEEEEEE
T ss_pred             ---------------ccCCceEEeec-----------------ccHHHHHHHHhccCCCCEEEE
Confidence                           35679987751                 124578888899999999885

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=95.58  E-value=0.0097  Score=55.51  Aligned_cols=143  Identities=15%  Similarity=0.154  Sum_probs=87.4

Q ss_pred             CCeEEEEeCchhHHHHHHHhhCC-CEEEEEECChHH--HHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGVGGGALVSFLRTQLD-FEVVGVEMDEVV--LRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~~-~~V~~VEiDp~V--l~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      ..+|+.||+|-|+.+.++..... ..|.++++=-..  .-+..+.++   .+-++...++.+.+                
T Consensus        67 ~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~---~ni~~~~~~~dv~~----------------  127 (257)
T d2p41a1          67 EGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYG---WNLVRLQSGVDVFF----------------  127 (257)
T ss_dssp             CEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTT---GGGEEEECSCCTTT----------------
T ss_pred             CCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccc---cccccchhhhhHHh----------------
Confidence            35899999999999998887753 577777772110  000000000   01223333333322                


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCC---CCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHH
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPV---EFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDM  416 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~---~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~  416 (478)
                                     ....+.|+|++|+-.++       |..   +-.+...++.+.+.|++||-|++=+.++-..-.-.
T Consensus       128 ---------------l~~~~~D~vlcDm~ess-------~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~~v~e  185 (257)
T d2p41a1         128 ---------------IPPERCDTLLCDIGESS-------PNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIE  185 (257)
T ss_dssp             ---------------SCCCCCSEEEECCCCCC-------SSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHH
T ss_pred             ---------------cCCCcCCEEEeeCCCCC-------CCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCChHHHH
Confidence                           14678999999984322       222   23445778888899999999999999886555666


Q ss_pred             HHHHHHHhcCccEEE-ee-cccceEEEEEEcC
Q 038592          417 LIQEFRDVFQELYEI-DV-GNEENFVLIATGL  446 (478)
Q Consensus       417 v~~~l~~vF~~v~~~-~v-~~~~N~Vl~a~~~  446 (478)
                      .+..|+..|.....- |. .+...++.+.+..
T Consensus       186 ~le~lq~~fgg~lVR~P~SRnst~EmY~Vs~~  217 (257)
T d2p41a1         186 KMEALQRKHGGALVRNPLSRNSTHEMYWVSNA  217 (257)
T ss_dssp             HHHHHHHHHCCEEECCTTSCTTCCCEEEETTC
T ss_pred             HHHHHHHHhCCeeEcCCCCccccceeEEeecc
Confidence            789999999864332 32 2334455555433

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.53  E-value=0.023  Score=46.85  Aligned_cols=55  Identities=24%  Similarity=0.359  Sum_probs=42.0

Q ss_pred             eEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHH--HHHH
Q 038592          265 KALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIE--FLEK  326 (478)
Q Consensus       265 ~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~--~l~~  326 (478)
                      +|+|+|+|  |-.++..|.+. +.+|++||.||+.++.+++.++      ..++.||+.+  ++++
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~-g~~v~vid~d~~~~~~~~~~~~------~~vi~Gd~~~~~~l~~   60 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEK-GHDIVLIDIDKDICKKASAEID------ALVINGDCTKIKTLED   60 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHCS------SEEEESCTTSHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCCcceecCChhhhhhhhhhhh------hhhccCcccchhhhhh
Confidence            79999997  44466666543 6899999999999998877664      4789999875  5554

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.38  E-value=0.028  Score=47.67  Aligned_cols=95  Identities=20%  Similarity=0.285  Sum_probs=62.5

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      ..+|||.|.|+ |.++..+.+..+.+|.+++.++.=++.+++ +|...  -+...-.|..+-+++.              
T Consensus        28 g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~-~Ga~~--~~~~~~~~~~~~~~~~--------------   90 (168)
T d1rjwa2          28 GEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE-LGADL--VVNPLKEDAAKFMKEK--------------   90 (168)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-TTCSE--EECTTTSCHHHHHHHH--------------
T ss_pred             CCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhh-cCcce--ecccccchhhhhcccc--------------
Confidence            46899999885 455556666677899999999999999988 55420  0000012444444442              


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN  405 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N  405 (478)
                                    .. .+|.+++|.-                ..+.+..+.+.|+++|.+++-
T Consensus        91 --------------~~-~~~~~v~~~~----------------~~~~~~~a~~~l~~~G~i~~~  123 (168)
T d1rjwa2          91 --------------VG-GVHAAVVTAV----------------SKPAFQSAYNSIRRGGACVLV  123 (168)
T ss_dssp             --------------HS-SEEEEEESSC----------------CHHHHHHHHHHEEEEEEEEEC
T ss_pred             --------------cC-CCceEEeecC----------------CHHHHHHHHHHhccCCceEec
Confidence                          22 3555556431                256789999999999998863

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=95.06  E-value=0.012  Score=58.51  Aligned_cols=133  Identities=14%  Similarity=0.116  Sum_probs=81.5

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC--------------CCEEEEEECChHHHHHHHHhcCCC--CCCCeEEEEchHHHHHHH
Q 038592          263 RPKALCVGVGGGALVSFLRTQL--------------DFEVVGVEMDEVVLRVARQYFGLE--DGEFLQVSVGDAIEFLEK  326 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~--------------~~~V~~VEiDp~Vl~vA~~~Fg~~--~d~rl~v~v~Dg~~~l~~  326 (478)
                      ..+|+.-.||+|++...+.++.              ...+.++|+|+....+|+-.+-+.  ..+..++..+|.+..   
T Consensus       163 ~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~~---  239 (425)
T d2okca1         163 GETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEK---  239 (425)
T ss_dssp             TCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTS---
T ss_pred             cceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhhh---
Confidence            5699999999998765555442              135999999999999998654322  234456777776532   


Q ss_pred             HHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCC-CCCCC------CCCCCCCChHHHHHHHHHccCcC
Q 038592          327 LARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGD-ARNGT------SAPPVEFVRKDVLLAARLILSDF  399 (478)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d-~~~g~------s~Pp~~f~~~efl~~~~~~L~~~  399 (478)
                                                  ....+||+|+.+..=+. .....      ..++..-...-|++.+.+.|++|
T Consensus       240 ----------------------------~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~  291 (425)
T d2okca1         240 ----------------------------EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTG  291 (425)
T ss_dssp             ----------------------------CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEE
T ss_pred             ----------------------------hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCC
Confidence                                        14568999998542110 00000      00111123466999999999999


Q ss_pred             cEEEEEeCCC---CchHHHHHHHHHHHhcC
Q 038592          400 GIFVMNVIPP---NRSFYDMLIQEFRDVFQ  426 (478)
Q Consensus       400 Gilv~N~~~~---~~~~~~~v~~~l~~vF~  426 (478)
                      |.+++=+...   .....+.+-+.|.+-+.
T Consensus       292 G~~~iI~p~~~L~~~~~~~~iR~~Ll~~~~  321 (425)
T d2okca1         292 GRAAVVLPDNVLFEAGAGETIRKRLLQDFN  321 (425)
T ss_dssp             EEEEEEEEHHHHHCSTHHHHHHHHHHHHEE
T ss_pred             CeEEEEechHHhhhhhhHHHHHHHHHHhcc
Confidence            9877655422   22223344555555443

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.05  E-value=0.056  Score=46.94  Aligned_cols=99  Identities=14%  Similarity=0.067  Sum_probs=65.6

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCCCCCCCeEEEEch-HHHHHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGD-AIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~D-g~~~l~~~~~~~~~~~~~~~  339 (478)
                      ..+|||+|+|+ |.++..+.+..+. +|.++|.+++=++.|+++ |...  -+.....| ..+.+.+..           
T Consensus        29 G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~-Ga~~--~i~~~~~~~~~~~~~~~~-----------   94 (174)
T d1e3ia2          29 GSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL-GATD--CLNPRELDKPVQDVITEL-----------   94 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT-TCSE--EECGGGCSSCHHHHHHHH-----------
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh-CCCc--ccCCccchhhhhhhHhhh-----------
Confidence            46899999997 7777777777765 899999999999999885 5321  00001112 233332211           


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcC-cEEEEEeC
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDF-GIFVMNVI  407 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~-Gilv~N~~  407 (478)
                                      ....+|++|--  ++              .++.++.+.+.|+++ |.+++--.
T Consensus        95 ----------------~~~G~d~vie~--~G--------------~~~~~~~a~~~~~~g~G~~v~vG~  131 (174)
T d1e3ia2          95 ----------------TAGGVDYSLDC--AG--------------TAQTLKAAVDCTVLGWGSCTVVGA  131 (174)
T ss_dssp             ----------------HTSCBSEEEES--SC--------------CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred             ----------------hcCCCcEEEEe--cc--------------cchHHHHHHHHhhcCCeEEEecCC
Confidence                            24468998762  11              256889999999996 99886433

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=94.81  E-value=0.045  Score=46.75  Aligned_cols=94  Identities=14%  Similarity=0.227  Sum_probs=62.4

Q ss_pred             CeEEEEeCch--hHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC---CC----CCeEEEEchHHHHHHHHHhhhcCC
Q 038592          264 PKALCVGVGG--GALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE---DG----EFLQVSVGDAIEFLEKLARQIVGK  334 (478)
Q Consensus       264 ~~VLvIGlGg--G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~---~d----~rl~v~v~Dg~~~l~~~~~~~~~~  334 (478)
                      +++.|||+|.  ++++..|.+. +.+|.+++.++.-++..++.-...   ..    .+...+..|..+.+          
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~----------   70 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALK-GQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV----------   70 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH----------
T ss_pred             CEEEEECccHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHh----------
Confidence            5899999994  4455556554 689999999999988887653211   11    11222344544443          


Q ss_pred             CCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          335 NPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                             ...|+||+=+            |. ....+.++.++..|+++-++++
T Consensus        71 -----------------------~~aD~iii~v------------~~-~~~~~~~~~i~~~l~~~~~iv~  104 (184)
T d1bg6a2          71 -----------------------KDADVILIVV------------PA-IHHASIAANIASYISEGQLIIL  104 (184)
T ss_dssp             -----------------------TTCSEEEECS------------CG-GGHHHHHHHHGGGCCTTCEEEE
T ss_pred             -----------------------cCCCEEEEEE------------ch-hHHHHHHHHhhhccCCCCEEEE
Confidence                                   2379999932            22 2468899999999999876653

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=94.65  E-value=0.079  Score=45.36  Aligned_cols=93  Identities=18%  Similarity=0.257  Sum_probs=61.9

Q ss_pred             CCeEEEEeCchhH-HHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEE--chHHHHHHHHHhhhcCCCCCC
Q 038592          263 RPKALCVGVGGGA-LVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSV--GDAIEFLEKLARQIVGKNPDS  338 (478)
Q Consensus       263 ~~~VLvIGlGgG~-L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v--~Dg~~~l~~~~~~~~~~~~~~  338 (478)
                      ..+|||+|.|+.+ ++..+.+.. ...|.++|.+++-++.++++.. .     .++.  .|-.+.+.+..          
T Consensus        33 g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga-~-----~~i~~~~~~~~~~~~~~----------   96 (172)
T d1h2ba2          33 GAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGA-D-----HVVDARRDPVKQVMELT----------   96 (172)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTC-S-----EEEETTSCHHHHHHHHT----------
T ss_pred             CCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhccc-c-----eeecCcccHHHHHHHhh----------
Confidence            4689999998543 444444444 4689999999999999998643 1     1221  23344433321          


Q ss_pred             CCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          339 FGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                       ....+|+||-.+.                ....++...+.|+++|.+++
T Consensus        97 -----------------~~~g~d~vid~~g----------------~~~~~~~a~~~l~~~G~iv~  129 (172)
T d1h2ba2          97 -----------------RGRGVNVAMDFVG----------------SQATVDYTPYLLGRMGRLII  129 (172)
T ss_dssp             -----------------TTCCEEEEEESSC----------------CHHHHHHGGGGEEEEEEEEE
T ss_pred             -----------------CCCCceEEEEecC----------------cchHHHHHHHHHhCCCEEEE
Confidence                             3456998887321                14578889999999999985

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.61  E-value=0.077  Score=46.00  Aligned_cols=43  Identities=14%  Similarity=0.212  Sum_probs=34.5

Q ss_pred             CCeEEEEeCchhH-HHHHHHhhCC-CEEEEEECChHHHHHHHHhc
Q 038592          263 RPKALCVGVGGGA-LVSFLRTQLD-FEVVGVEMDEVVLRVARQYF  305 (478)
Q Consensus       263 ~~~VLvIGlGgG~-L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~F  305 (478)
                      ...|||+|+|+.+ ++..+.++.+ .+|.++|.+++-++.|+++-
T Consensus        30 g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~G   74 (176)
T d1d1ta2          30 GSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVG   74 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHT
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcC
Confidence            4589999999654 4455555666 69999999999999999874

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=94.34  E-value=0.12  Score=43.99  Aligned_cols=42  Identities=26%  Similarity=0.320  Sum_probs=34.8

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCCEEEEEECChHHHHHHHHh
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDFEVVGVEMDEVVLRVARQY  304 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~  304 (478)
                      ..+|||+|.|+ |.++..+.+..+.++.+++.+++-.+.|++.
T Consensus        31 G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~l   73 (168)
T d1uufa2          31 GKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKAL   73 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH
T ss_pred             CCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhcc
Confidence            56999999874 6677777777788889999999999999775

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=94.32  E-value=0.11  Score=44.96  Aligned_cols=42  Identities=14%  Similarity=0.135  Sum_probs=32.8

Q ss_pred             CCeEEEEeCchhH-HHHHHHhhCC-CEEEEEECChHHHHHHHHh
Q 038592          263 RPKALCVGVGGGA-LVSFLRTQLD-FEVVGVEMDEVVLRVARQY  304 (478)
Q Consensus       263 ~~~VLvIGlGgG~-L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~  304 (478)
                      ..+|||+|+|+.. ++..+.+..+ .+|.++|.++.-++.|+++
T Consensus        28 G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l   71 (174)
T d1p0fa2          28 GSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL   71 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc
Confidence            4689999999655 4444444455 6999999999999999885

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=94.00  E-value=0.065  Score=43.78  Aligned_cols=51  Identities=25%  Similarity=0.465  Sum_probs=37.7

Q ss_pred             CeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHH
Q 038592          264 PKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIE  322 (478)
Q Consensus       264 ~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~  322 (478)
                      ++++|+|+|  |-.++..|.+. +.+|++||.|++.++.+++.+       ..++++|+.+
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~-g~~vvvid~d~~~~~~~~~~~-------~~~~~gd~~~   53 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRM-GHEVLAVDINEEKVNAYASYA-------THAVIANATE   53 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT-TCCCEEEESCHHHHHHTTTTC-------SEEEECCTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCeEEEecCcHHHHHHHHHhC-------Ccceeeeccc
Confidence            478999887  33455666543 689999999999999886542       3678888865

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=93.87  E-value=0.056  Score=46.10  Aligned_cols=96  Identities=19%  Similarity=0.333  Sum_probs=60.6

Q ss_pred             CCeEEEEeC-c-hhHHHHHHHhhCC-CEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGV-G-GGALVSFLRTQLD-FEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGl-G-gG~L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      ..+|||+|+ | .|.++..+.+..+ .+|.+++.++.=++.++++ |..  ..+.....|..+.+.+..           
T Consensus        28 g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~-Ga~--~~i~~~~~~~~~~~~~~~-----------   93 (170)
T d1jvba2          28 TKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA-GAD--YVINASMQDPLAEIRRIT-----------   93 (170)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH-TCS--EEEETTTSCHHHHHHHHT-----------
T ss_pred             CCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc-CCc--eeeccCCcCHHHHHHHHh-----------
Confidence            568999996 3 3445544444444 7999999999999999875 431  111111124444444321           


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                      ....||+|+--+.                ..+.++.+.+.|+++|.+++
T Consensus        94 ----------------~~~~~d~vid~~g----------------~~~~~~~a~~~l~~~G~iv~  126 (170)
T d1jvba2          94 ----------------ESKGVDAVIDLNN----------------SEKTLSVYPKALAKQGKYVM  126 (170)
T ss_dssp             ----------------TTSCEEEEEESCC----------------CHHHHTTGGGGEEEEEEEEE
T ss_pred             ----------------hcccchhhhcccc----------------cchHHHhhhhhcccCCEEEE
Confidence                            3456998776221                14566777899999999875

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.28  E-value=0.11  Score=44.44  Aligned_cols=95  Identities=15%  Similarity=0.142  Sum_probs=62.3

Q ss_pred             CCeEEEEeC--chhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGV--GGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGl--GgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+|||.|+  |.|.++.-+.++.+.++.++.-+++-.+.++++ |..  .-+...-.|-.+.+++..            
T Consensus        26 g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~-Ga~--~vi~~~~~~~~~~v~~~t------------   90 (183)
T d1pqwa_          26 GERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRL-GVE--YVGDSRSVDFADEILELT------------   90 (183)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTT-CCS--EEEETTCSTHHHHHHHHT------------
T ss_pred             CCEEEEECCCCCcccccchhhccccccceeeecccccccccccc-ccc--ccccCCccCHHHHHHHHh------------
Confidence            468999885  245566666666788999888888889999874 432  111112234555555421            


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                     .+..+|+|+--+                 ..+.++.+.+.|+++|.++.
T Consensus        91 ---------------~~~g~d~v~d~~-----------------g~~~~~~~~~~l~~~G~~v~  122 (183)
T d1pqwa_          91 ---------------DGYGVDVVLNSL-----------------AGEAIQRGVQILAPGGRFIE  122 (183)
T ss_dssp             ---------------TTCCEEEEEECC-----------------CTHHHHHHHHTEEEEEEEEE
T ss_pred             ---------------CCCCEEEEEecc-----------------cchHHHHHHHHhcCCCEEEE
Confidence                           346799999611                 02467778899999999885

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.04  E-value=0.38  Score=40.52  Aligned_cols=105  Identities=14%  Similarity=0.110  Sum_probs=67.5

Q ss_pred             eEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          265 KALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       265 ~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      +|-+||+|  |..++.-|.+. +.+|.+.|.++.-++..++...        ....+..+.+++                
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~-G~~V~~~d~~~~~~~~~~~~~~--------~~~~~~~e~~~~----------------   56 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKA-GYSLVVSDRNPEAIADVIAAGA--------ETASTAKAIAEQ----------------   56 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHTTC--------EECSSHHHHHHH----------------
T ss_pred             EEEEEehhHHHHHHHHHHHHC-CCeEEEEeCCcchhHHHHHhhh--------hhcccHHHHHhC----------------
Confidence            68999999  55677666653 6899999999999888776532        123344455433                


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHH---HHHHHccCcCcEEEEEeCCCCchHHHHHHH
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVL---LAARLILSDFGIFVMNVIPPNRSFYDMLIQ  419 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl---~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~  419 (478)
                                       -|+||+-+.+.+            ...+.+   ..+...+++ |.+++++.+.+++....+.+
T Consensus        57 -----------------~d~ii~~v~~~~------------~v~~v~~~~~~~~~~~~~-g~iiid~sT~~p~~~~~~~~  106 (161)
T d1vpda2          57 -----------------CDVIITMLPNSP------------HVKEVALGENGIIEGAKP-GTVLIDMSSIAPLASREISD  106 (161)
T ss_dssp             -----------------CSEEEECCSSHH------------HHHHHHHSTTCHHHHCCT-TCEEEECSCCCHHHHHHHHH
T ss_pred             -----------------CCeEEEEcCCHH------------HHHHHHhCCcchhhccCC-CCEEEECCCCCHHHHHHHHH
Confidence                             689999442211            123333   235566666 56677887777776666666


Q ss_pred             HHHHh
Q 038592          420 EFRDV  424 (478)
Q Consensus       420 ~l~~v  424 (478)
                      .+++.
T Consensus       107 ~~~~~  111 (161)
T d1vpda2         107 ALKAK  111 (161)
T ss_dssp             HHHTT
T ss_pred             HHHHc
Confidence            66653

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=93.04  E-value=0.12  Score=44.18  Aligned_cols=95  Identities=17%  Similarity=0.163  Sum_probs=62.5

Q ss_pred             CCeEEEEeCch--hHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGG--GALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGg--G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+|||.|+||  |.++..+.+..+.+|.+++.+++-.+.++++ |..  .-+...-.|-.+.++++.            
T Consensus        29 g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~l-Ga~--~vi~~~~~d~~~~v~~~t------------   93 (179)
T d1qora2          29 DEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKA-GAW--QVINYREEDLVERLKEIT------------   93 (179)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH-TCS--EEEETTTSCHHHHHHHHT------------
T ss_pred             CCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhc-CCe--EEEECCCCCHHHHHHHHh------------
Confidence            46899997775  4455566666789999999999999999875 532  111111235555555531            


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                     .+..+|+|+- .-.                .+.+......|+++|.+++
T Consensus        94 ---------------~g~g~d~v~d-~~g----------------~~~~~~~~~~l~~~G~~v~  125 (179)
T d1qora2          94 ---------------GGKKVRVVYD-SVG----------------RDTWERSLDCLQRRGLMVS  125 (179)
T ss_dssp             ---------------TTCCEEEEEE-CSC----------------GGGHHHHHHTEEEEEEEEE
T ss_pred             ---------------CCCCeEEEEe-Ccc----------------HHHHHHHHHHHhcCCeeee
Confidence                           3567897554 211                2356778889999998765

>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: LPG1296-like
domain: Uncharacterized protein LPG1296
species: Legionella pneumophila [TaxId: 446]

Probab=92.91  E-value=0.31  Score=45.44  Aligned_cols=103  Identities=16%  Similarity=0.194  Sum_probs=75.1

Q ss_pred             CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEE
Q 038592          285 DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIM  364 (478)
Q Consensus       285 ~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi  364 (478)
                      +-++..+|+.|+-.+.-++.|.  .+++++|+..||.+.+....-                          +..+=-+|+
T Consensus       104 ~Drl~l~ELHp~e~~~L~~~~~--~~~~~~v~~~DG~~~l~allP--------------------------P~~rRgLVL  155 (271)
T d2oo3a1         104 QDRLYLCELHPTEYNFLLKLPH--FNKKVYVNHTDGVSKLNALLP--------------------------PPEKRGLIF  155 (271)
T ss_dssp             TSEEEEECCSHHHHHHHTTSCC--TTSCEEEECSCHHHHHHHHCS--------------------------CTTSCEEEE
T ss_pred             CCceEEeecCHHHHHHHHHHhc--cCCCceEEcCchHHHHHhhCC--------------------------CCCCceEEE
Confidence            5799999999999999998876  468999999999999987531                          344555999


Q ss_pred             EeCCCCCCCCCCCCCCCCCCh--HHHHHHHHHccC--cCcEEEEEeCCCCchHHHHHHHHHHHhcCc
Q 038592          365 VDLDSGDARNGTSAPPVEFVR--KDVLLAARLILS--DFGIFVMNVIPPNRSFYDMLIQEFRDVFQE  427 (478)
Q Consensus       365 vDv~s~d~~~g~s~Pp~~f~~--~efl~~~~~~L~--~~Gilv~N~~~~~~~~~~~v~~~l~~vF~~  427 (478)
                      +|            ||-+.-+  ....+.+.+.++  +.|+++++..--+....+.+.+.|++.=+.
T Consensus       156 ID------------PpYE~k~ey~~v~~~l~~a~kr~~~g~~~iWYPi~~~~~~~~~~~~l~~~~~k  210 (271)
T d2oo3a1         156 ID------------PSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMREISSK  210 (271)
T ss_dssp             EC------------CCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHHHHHHHHCSS
T ss_pred             ec------------CCcCCHHHHHHHHHHHHHHHHhCCCceEEEEeeccCcHHHHHHHHHHHhcCcc
Confidence            97            3333211  233444455554  589999888766777778888888877543

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=92.68  E-value=0.6  Score=39.49  Aligned_cols=43  Identities=16%  Similarity=0.227  Sum_probs=32.9

Q ss_pred             CCeEEEEeCchhH-HHHHHHhhC-CCEEEEEECChHHHHHHHHhc
Q 038592          263 RPKALCVGVGGGA-LVSFLRTQL-DFEVVGVEMDEVVLRVARQYF  305 (478)
Q Consensus       263 ~~~VLvIGlGgG~-L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~F  305 (478)
                      ...|||+|+|++. ++..+.+.. ..+|.+++.++.-.+.|+++-
T Consensus        29 GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~G   73 (176)
T d2jhfa2          29 GSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVG   73 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT
T ss_pred             CCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhC
Confidence            3589999998654 333444445 479999999999999998874

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=92.59  E-value=0.23  Score=42.54  Aligned_cols=124  Identities=10%  Similarity=0.006  Sum_probs=74.7

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+|-+||+|  |..++.-|.+. +.+|.+.|.+++-++...+..... ..  ..-....-+.. +              
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~-G~~V~v~dr~~~~~~~l~~~~~~~-~~--~~~a~~~~~~~-~--------------   62 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDH-GFVVCAFNRTVSKVDDFLANEAKG-TK--VLGAHSLEEMV-S--------------   62 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSTHHHHHHHHTTTTT-SS--CEECSSHHHHH-H--------------
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHC-CCeEEEEcCCHHHHHHHHHhcccc-cc--ccchhhhhhhh-h--------------
Confidence            3589999999  55677777664 679999999999887655432211 10  11111222222 2              


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHH
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQE  420 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~  420 (478)
                                     .-...|+|++.+.+..            ...+.++.+...|+++ -+++++.+.++.....+.+.
T Consensus        63 ---------------~~~~~~~ii~~~~~~~------------~v~~v~~~l~~~~~~g-~iiid~sT~~~~~~~~~~~~  114 (176)
T d2pgda2          63 ---------------KLKKPRRIILLVKAGQ------------AVDNFIEKLVPLLDIG-DIIIDGGNSEYRDTMRRCRD  114 (176)
T ss_dssp             ---------------HBCSSCEEEECSCTTH------------HHHHHHHHHHHHCCTT-CEEEECSCCCHHHHHHHHHH
T ss_pred             ---------------hhcccceEEEecCchH------------HHHHHHHHHHhccccC-cEEEecCcchhHHHHHHHHH
Confidence                           1234688888554322            2356778888888874 56778877777666666666


Q ss_pred             HHHhcCccEEEee
Q 038592          421 FRDVFQELYEIDV  433 (478)
Q Consensus       421 l~~vF~~v~~~~v  433 (478)
                      +.+.=-.....++
T Consensus       115 ~~~~g~~~ldapv  127 (176)
T d2pgda2         115 LKDKGILFVGSGV  127 (176)
T ss_dssp             HHHTTCEEEEEEE
T ss_pred             HHhcCCceecccc
Confidence            6654223344454

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=92.40  E-value=0.049  Score=45.74  Aligned_cols=92  Identities=18%  Similarity=0.199  Sum_probs=54.9

Q ss_pred             eEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592          265 KALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC  342 (478)
Q Consensus       265 ~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~  342 (478)
                      ||+|||+|  |+.++..|.+. +.+|+.++.++.-.+.. ...+............+..+.+                  
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~-G~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------------------   61 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQ-GHEVQGWLRVPQPYCSV-NLVETDGSIFNESLTANDPDFL------------------   61 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSCCSEEEE-EEECTTSCEEEEEEEESCHHHH------------------
T ss_pred             EEEEECcCHHHHHHHHHHHHC-CCceEEEEcCHHHhhhh-ccccCCccccccccccchhhhh------------------
Confidence            79999999  44566666553 67999999887533211 1111111111222233333222                  


Q ss_pred             cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                     ..+|+||+=+           +  ....++.++.++..++++..++.
T Consensus        62 ---------------~~~D~iii~v-----------k--a~~~~~~~~~l~~~~~~~~~Iv~   95 (167)
T d1ks9a2          62 ---------------ATSDLLLVTL-----------K--AWQVSDAVKSLASTLPVTTPILL   95 (167)
T ss_dssp             ---------------HTCSEEEECS-----------C--GGGHHHHHHHHHTTSCTTSCEEE
T ss_pred             ---------------cccceEEEee-----------c--ccchHHHHHhhccccCcccEEee
Confidence                           2489999922           1  13568899999999998876654

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.28  E-value=0.44  Score=41.15  Aligned_cols=97  Identities=15%  Similarity=0.181  Sum_probs=61.1

Q ss_pred             CCCCeEEEEeC--chhHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCC
Q 038592          261 GFRPKALCVGV--GGGALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPD  337 (478)
Q Consensus       261 g~~~~VLvIGl--GgG~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~  337 (478)
                      |....|||.|+  |.|..+.-+.+..+. .|.++.-.++-.....+.+|..  .-+.....|..+.+++.          
T Consensus        29 G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad--~vi~~~~~~~~~~~~~~----------   96 (187)
T d1vj1a2          29 GSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFD--AAVNYKTGNVAEQLREA----------   96 (187)
T ss_dssp             TSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCS--EEEETTSSCHHHHHHHH----------
T ss_pred             CCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccce--EEeeccchhHHHHHHHH----------
Confidence            44467999885  456777777777775 5666665554444444445542  11222233566666663          


Q ss_pred             CCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          338 SFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                        ....+|+|+- .     .           -.+.++...+.|+++|.++.
T Consensus        97 ------------------~~~GvDvv~D-~-----v-----------Gg~~~~~~~~~l~~~G~iv~  128 (187)
T d1vj1a2          97 ------------------CPGGVDVYFD-N-----V-----------GGDISNTVISQMNENSHIIL  128 (187)
T ss_dssp             ------------------CTTCEEEEEE-S-----S-----------CHHHHHHHHTTEEEEEEEEE
T ss_pred             ------------------hccCceEEEe-c-----C-----------CchhHHHHhhhccccccEEE
Confidence                              3456999974 1     1           14578899999999999875

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.27  E-value=0.74  Score=40.13  Aligned_cols=38  Identities=24%  Similarity=0.451  Sum_probs=29.3

Q ss_pred             eEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHH
Q 038592          265 KALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQ  303 (478)
Q Consensus       265 ~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~  303 (478)
                      +|.|||+|  |..++..+++ .+.+|.++|+|++.++.-.+
T Consensus         2 kI~ViGlG~vGl~~a~~la~-~g~~V~g~D~n~~~i~~ln~   41 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSA-RGHEVIGVDVSSTKIDLINQ   41 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHH-TTCEEEEECSCHHHHHHHHT
T ss_pred             EEEEECCCHhHHHHHHHHHh-CCCcEEEEeCCHHHHHHhcc
Confidence            69999999  4455555554 36899999999999886653

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=91.99  E-value=0.36  Score=41.37  Aligned_cols=95  Identities=18%  Similarity=0.253  Sum_probs=63.7

Q ss_pred             CCeEEEEeCchh--HHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592          263 RPKALCVGVGGG--ALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       263 ~~~VLvIGlGgG--~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~  340 (478)
                      ..+|||.|.|+|  ..+..|.+..+.+|.++.-+++-.+.++++ |..  .-+...-.|..+.+.+..            
T Consensus        30 G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~-Ga~--~vi~~~~~~~~~~~~~~~------------   94 (182)
T d1v3va2          30 GETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI-GFD--AAFNYKTVNSLEEALKKA------------   94 (182)
T ss_dssp             SCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT-TCS--EEEETTSCSCHHHHHHHH------------
T ss_pred             CCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhh-hhh--hhcccccccHHHHHHHHh------------
Confidence            468999888654  466667777789999999999999999876 321  111111223333333321            


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                                     ....+|+|+--                 .-.+.++...++|+++|.+++
T Consensus        95 ---------------~~~Gvd~v~D~-----------------vG~~~~~~~~~~l~~~G~~v~  126 (182)
T d1v3va2          95 ---------------SPDGYDCYFDN-----------------VGGEFLNTVLSQMKDFGKIAI  126 (182)
T ss_dssp             ---------------CTTCEEEEEES-----------------SCHHHHHHHGGGEEEEEEEEE
T ss_pred             ---------------hcCCCceeEEe-----------------cCchhhhhhhhhccCCCeEEe
Confidence                           34569997761                 115688999999999998885

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=91.73  E-value=0.79  Score=38.46  Aligned_cols=97  Identities=18%  Similarity=0.162  Sum_probs=61.4

Q ss_pred             CCeEEEEeCchh-HHHHHHHhhCC-CEEEEEECChHHHHHHHHhcCCCCCCCeEE--EEchHHHHHHHHHhhhcCCCCCC
Q 038592          263 RPKALCVGVGGG-ALVSFLRTQLD-FEVVGVEMDEVVLRVARQYFGLEDGEFLQV--SVGDAIEFLEKLARQIVGKNPDS  338 (478)
Q Consensus       263 ~~~VLvIGlGgG-~L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v--~v~Dg~~~l~~~~~~~~~~~~~~  338 (478)
                      ..+|||.|+|+. .++..+.+..+ ..|.+++.++.-.+.|+++ |...  -+..  ...+..+.+++.           
T Consensus        29 G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l-Ga~~--~i~~~~~~~~~~~~~~~~-----------   94 (176)
T d2fzwa2          29 GSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF-GATE--CINPQDFSKPIQEVLIEM-----------   94 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH-TCSE--EECGGGCSSCHHHHHHHH-----------
T ss_pred             CCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh-CCcE--EEeCCchhhHHHHHHHHH-----------
Confidence            458999998853 34444555555 6999999999999999874 5321  0000  012334444431           


Q ss_pred             CCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592          339 FGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV  406 (478)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~  406 (478)
                                       ....+|+||--+  +              ....++.+...++++|.+++-.
T Consensus        95 -----------------~~~g~D~vid~~--G--------------~~~~~~~~~~~~~~g~~~~~v~  129 (176)
T d2fzwa2          95 -----------------TDGGVDYSFECI--G--------------NVKVMRAALEACHKGWGVSVVV  129 (176)
T ss_dssp             -----------------TTSCBSEEEECS--C--------------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred             -----------------cCCCCcEeeecC--C--------------CHHHHHHHHHhhcCCceeEEEE
Confidence                             345699988722  1              2567888999999987766543

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=90.83  E-value=0.11  Score=47.06  Aligned_cols=67  Identities=21%  Similarity=0.196  Sum_probs=44.2

Q ss_pred             EEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCC--hHHHHHH
Q 038592          314 QVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFV--RKDVLLA  391 (478)
Q Consensus       314 ~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~--~~efl~~  391 (478)
                      .++++|.++.|+++                            +++..|+|+.|..=.-...... -...++  ...++..
T Consensus         6 ~~~~~D~le~l~~l----------------------------~d~SIDliitDPPYn~~~~~~~-~~~~y~~~~~~~~~e   56 (279)
T d1eg2a_           6 VYDVCDCLDTLAKL----------------------------PDDSVQLIICDPPYNIMLADWD-DHMDYIGWAKRWLAE   56 (279)
T ss_dssp             EEEECCHHHHHHTS----------------------------CTTCEEEEEECCCSBCCGGGGG-TCSSHHHHHHHHHHH
T ss_pred             eEEechHHHHHhhC----------------------------cCCCccEEEECCCCCCCccccc-CHHHHHHHHHHHHHH
Confidence            57789999999873                            5778999999742100000000 011221  2667888


Q ss_pred             HHHccCcCcEEEEEeCCC
Q 038592          392 ARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       392 ~~~~L~~~Gilv~N~~~~  409 (478)
                      +++.|+++|.+++|....
T Consensus        57 ~~rvLk~~G~~~~~~~~~   74 (279)
T d1eg2a_          57 AERVLSPTGSIAIFGGLQ   74 (279)
T ss_dssp             HHHHEEEEEEEEEEECSC
T ss_pred             HHHHhCCCccEEEecCcc
Confidence            999999999999988543

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=90.80  E-value=1  Score=37.85  Aligned_cols=44  Identities=14%  Similarity=0.225  Sum_probs=33.1

Q ss_pred             CCeEEEEeCchhH-HHHHHHhhC-CCEEEEEECChHHHHHHHHhcCC
Q 038592          263 RPKALCVGVGGGA-LVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGL  307 (478)
Q Consensus       263 ~~~VLvIGlGgG~-L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~  307 (478)
                      ..+|||+|+|++. ++..+.... ..+|.++|.+++-++.|++ ||.
T Consensus        29 g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~-~GA   74 (175)
T d1cdoa2          29 GSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV-FGA   74 (175)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH-TTC
T ss_pred             CCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHH-cCC
Confidence            4589999999755 334344444 5699999999999999987 463

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=90.47  E-value=0.13  Score=47.44  Aligned_cols=70  Identities=19%  Similarity=0.192  Sum_probs=45.4

Q ss_pred             CeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCC--CCCC--hHH
Q 038592          312 FLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPP--VEFV--RKD  387 (478)
Q Consensus       312 rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp--~~f~--~~e  387 (478)
                      .=++++||.++.|+.+                            ++++.|+|++|..=......-..-.  .+++  -.+
T Consensus        12 ~~~l~~GD~le~l~~l----------------------------~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~   63 (320)
T d1booa_          12 NGSMYIGDSLELLESF----------------------------PEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLS   63 (320)
T ss_dssp             SEEEEESCHHHHGGGS----------------------------CSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHH
T ss_pred             CCEEEehhHHHHHhhC----------------------------ccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHH
Confidence            3489999999999763                            5678999999742110000000000  0011  145


Q ss_pred             HHHHHHHccCcCcEEEEEeCCC
Q 038592          388 VLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       388 fl~~~~~~L~~~Gilv~N~~~~  409 (478)
                      .+..+++.|+++|.+++|....
T Consensus        64 ~l~~~~rvLk~~G~i~i~~~~~   85 (320)
T d1booa_          64 FAKVVNKKLKPDGSFVVDFGGA   85 (320)
T ss_dssp             HHHHHHHHEEEEEEEEEEECCC
T ss_pred             HHHHHHHhCcccCcccccccch
Confidence            7889999999999999998764

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=90.21  E-value=0.15  Score=45.61  Aligned_cols=65  Identities=11%  Similarity=0.112  Sum_probs=41.8

Q ss_pred             EEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCC---CCCCCCCCCCCC--ChHHH
Q 038592          314 QVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGD---ARNGTSAPPVEF--VRKDV  388 (478)
Q Consensus       314 ~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d---~~~g~s~Pp~~f--~~~ef  388 (478)
                      +++.+|.+++|+++                            +++.+|+|+.|..=..   ...... ...++  ...++
T Consensus         6 ~i~~gDcle~l~~l----------------------------pd~sVdliitdPPY~~~~~~~d~~~-~~~~y~~~~~~~   56 (256)
T d1g60a_           6 KIHQMNCFDFLDQV----------------------------ENKSVQLAVIDPPYNLSKADWDSFD-SHNEFLAFTYRW   56 (256)
T ss_dssp             SEEECCHHHHHHHS----------------------------CTTCEEEEEECCCCSSCSSGGGCCS-SHHHHHHHHHHH
T ss_pred             EEEeccHHHHHhhC----------------------------cCCCcCEEEECCCCCCCcCcCcCCC-CHHHHHHHHHHH
Confidence            58999999999874                            5678999999742100   000000 00001  12357


Q ss_pred             HHHHHHccCcCcEEEEEeC
Q 038592          389 LLAARLILSDFGIFVMNVI  407 (478)
Q Consensus       389 l~~~~~~L~~~Gilv~N~~  407 (478)
                      ++.+++.|+|+|.++++..
T Consensus        57 ~~e~~rvLk~~g~~~~~~~   75 (256)
T d1g60a_          57 IDKVLDKLDKDGSLYIFNT   75 (256)
T ss_dssp             HHHHHHHEEEEEEEEEEEC
T ss_pred             HHHhhhccccCcccccccC
Confidence            8889999999998876654

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=90.15  E-value=0.35  Score=41.20  Aligned_cols=42  Identities=14%  Similarity=0.151  Sum_probs=33.4

Q ss_pred             CCeEEEEeC-c-hhHHHHHHHhhCCCEEEEEECChHHHHHHHHh
Q 038592          263 RPKALCVGV-G-GGALVSFLRTQLDFEVVGVEMDEVVLRVARQY  304 (478)
Q Consensus       263 ~~~VLvIGl-G-gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~  304 (478)
                      ..+|||.|. | .|.++..+.+..+.+|.+++-+++-.+.+++.
T Consensus        28 g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~l   71 (171)
T d1iz0a2          28 GEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLAL   71 (171)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHT
T ss_pred             CCEEEEEeccccchhhhhhhhccccccccccccccccccccccc
Confidence            468999885 3 35666667777889999999999989999874

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.78  E-value=1.3  Score=37.04  Aligned_cols=106  Identities=12%  Similarity=0.155  Sum_probs=67.8

Q ss_pred             CeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          264 PKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       264 ~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      .+|.+||+|  |..+++-|.+. +.+|.+.|.++.-.+.+... +.       ....+..+.+                 
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~-g~~v~~~d~~~~~~~~~~~~-~~-------~~~~~~~e~~-----------------   55 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKA-GYLLNVFDLVQSAVDGLVAA-GA-------SAARSARDAV-----------------   55 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT-TCEEEEECSSHHHHHHHHHT-TC-------EECSSHHHHH-----------------
T ss_pred             CEEEEEEEHHHHHHHHHHHHHC-CCeEEEEECchhhhhhhhhh-hc-------cccchhhhhc-----------------
Confidence            489999999  56677777765 67999999999988877554 32       1222333332                 


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHH---HHHccCcCcEEEEEeCCCCchHHHHHH
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLA---ARLILSDFGIFVMNVIPPNRSFYDMLI  418 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~---~~~~L~~~Gilv~N~~~~~~~~~~~v~  418 (478)
                                      ...|+|++-+.+.+            ...+.+..   +...|++ |.+++++.+-+++....+.
T Consensus        56 ----------------~~~diii~~v~~~~------------~~~~v~~~~~~~~~~l~~-g~iiid~st~~p~~~~~~~  106 (162)
T d3cuma2          56 ----------------QGADVVISMLPASQ------------HVEGLYLDDDGLLAHIAP-GTLVLECSTIAPTSARKIH  106 (162)
T ss_dssp             ----------------TSCSEEEECCSCHH------------HHHHHHHSTTCHHHHSCT-TCEEEECSCCCHHHHHHHH
T ss_pred             ----------------cccCeeeecccchh------------hHHHHHhccccccccCCC-CCEEEECCCCCHHHHHHHH
Confidence                            23688888553321            12333322   4556766 4566788888777766666


Q ss_pred             HHHHHh
Q 038592          419 QEFRDV  424 (478)
Q Consensus       419 ~~l~~v  424 (478)
                      +.+++.
T Consensus       107 ~~~~~~  112 (162)
T d3cuma2         107 AAARER  112 (162)
T ss_dssp             HHHHHT
T ss_pred             HHHHHC
Confidence            666663

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=89.11  E-value=0.29  Score=43.93  Aligned_cols=35  Identities=23%  Similarity=0.224  Sum_probs=25.4

Q ss_pred             CCCCeEEEEeCchhHHH--HHHHhhCCCEEEEEECChH
Q 038592          261 GFRPKALCVGVGGGALV--SFLRTQLDFEVVGVEMDEV  296 (478)
Q Consensus       261 g~~~~VLvIGlGgG~L~--~~L~~~~~~~V~~VEiDp~  296 (478)
                      .+|++|+|||+|-++|+  ..|.+. +.+|+++|-++.
T Consensus        28 ~~pkkV~IIGaG~aGLsaA~~L~~~-G~~V~vlE~~~~   64 (370)
T d2iida1          28 SNPKHVVIVGAGMAGLSAAYVLAGA-GHQVTVLEASER   64 (370)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHH-TCEEEEECSSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHC-CCCEEEEeCCCC
Confidence            35899999999965544  334443 789999997653

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=88.88  E-value=1.1  Score=45.16  Aligned_cols=115  Identities=15%  Similarity=0.018  Sum_probs=69.0

Q ss_pred             CCeEEEEeCchhHHHHHHHhhC-------------------CCEEEEEECChHHHHHHHHhcCCCCC-----CCeEEEEc
Q 038592          263 RPKALCVGVGGGALVSFLRTQL-------------------DFEVVGVEMDEVVLRVARQYFGLEDG-----EFLQVSVG  318 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~~L~~~~-------------------~~~V~~VEiDp~Vl~vA~~~Fg~~~d-----~rl~v~v~  318 (478)
                      ..+|+.-.||+|++...+.++.                   ...+.++|+|+....+|+-.+-+...     ..-.+..+
T Consensus       165 ~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~~~~  244 (524)
T d2ar0a1         165 REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLG  244 (524)
T ss_dssp             TCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEES
T ss_pred             chhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccchhhhh
Confidence            4589999999998765444432                   12589999999999999865433211     11123333


Q ss_pred             hHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCC-CC---CCCCCCCCCCCChHHHHHHHHH
Q 038592          319 DAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSG-DA---RNGTSAPPVEFVRKDVLLAARL  394 (478)
Q Consensus       319 Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~-d~---~~g~s~Pp~~f~~~efl~~~~~  394 (478)
                      |...--.                             ....+||+|+.+..=+ ..   ......+|..-.+.-|++.+.+
T Consensus       245 ~~l~~d~-----------------------------~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~  295 (524)
T d2ar0a1         245 NTLGSDG-----------------------------ENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIE  295 (524)
T ss_dssp             CTTSHHH-----------------------------HTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHH
T ss_pred             hhhhhcc-----------------------------cccccceeEEecCCccccccccchhhhccccccccHHHHHHHHH
Confidence            3322100                             1356799999954211 00   0011122333345569999999


Q ss_pred             ccCcCcEEEEEe
Q 038592          395 ILSDFGIFVMNV  406 (478)
Q Consensus       395 ~L~~~Gilv~N~  406 (478)
                      .|++||.+++=+
T Consensus       296 ~Lk~gGr~aiIl  307 (524)
T d2ar0a1         296 TLHPGGRAAVVV  307 (524)
T ss_dssp             HEEEEEEEEEEE
T ss_pred             hccccCcEEEEE
Confidence            999999887644

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=88.38  E-value=3.3  Score=34.61  Aligned_cols=115  Identities=10%  Similarity=0.022  Sum_probs=68.7

Q ss_pred             eEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC-CCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592          265 KALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL-EDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA  341 (478)
Q Consensus       265 ~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~-~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~  341 (478)
                      +|-+||+|  |..+++-|.+. +.+|.+.|.+++-.+...+-.+. ...+... ...+...++..               
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~-G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~---------------   65 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEK-GFKVAVFNRTYSKSEEFMKANASAPFAGNLK-AFETMEAFAAS---------------   65 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCEEEECSSHHHHHHHHHHTTTSTTGGGEE-ECSCHHHHHHH---------------
T ss_pred             EEEEEeehHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHcCCccccccchh-hhhhhhHHHHh---------------
Confidence            68999999  45577766654 68999999999988866554432 2223333 23344445433               


Q ss_pred             ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHH
Q 038592          342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEF  421 (478)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l  421 (478)
                                     -...+.|++-+           ++.. .....+..+...|+++.++ +++.+.+.+....+.+.+
T Consensus        66 ---------------~~~~~~~~~~~-----------~~~~-~~~~~~~~~~~~~~~~~ii-i~~st~~~~~~~~~~~~l  117 (178)
T d1pgja2          66 ---------------LKKPRKALILV-----------QAGA-ATDSTIEQLKKVFEKGDIL-VDTGNAHFKDQGRRAQQL  117 (178)
T ss_dssp             ---------------BCSSCEEEECC-----------CCSH-HHHHHHHHHHHHCCTTCEE-EECCCCCHHHHHHHHHHH
T ss_pred             ---------------cccceEEEEee-----------cCcc-hhhhhhhhhhhhcccccee-cccCccchhHHHHHHHHH
Confidence                           11233344422           1222 3456778888888886655 577766666555666655


Q ss_pred             HHh
Q 038592          422 RDV  424 (478)
Q Consensus       422 ~~v  424 (478)
                      .+.
T Consensus       118 ~~~  120 (178)
T d1pgja2         118 EAA  120 (178)
T ss_dssp             HTT
T ss_pred             hhc
Confidence            433

>d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0A
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.13  E-value=0.99  Score=36.10  Aligned_cols=73  Identities=14%  Similarity=0.187  Sum_probs=52.1

Q ss_pred             CEEEEEECChHHHHHHHHhcCCCCCCCeEEE--EchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEE
Q 038592          286 FEVVGVEMDEVVLRVARQYFGLEDGEFLQVS--VGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVI  363 (478)
Q Consensus       286 ~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~--v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvI  363 (478)
                      .+|-.||=|+.+.+..++++.-.  +...++  ..||.+.++.+.                            ..+||+|
T Consensus         2 irILivDD~~~~~~~l~~~L~~~--~~~~~v~~a~~g~~al~~~~----------------------------~~~~dli   51 (123)
T d1dz3a_           2 IKVCIADDNRELVSLLDEYISSQ--PDMEVIGTAYNGQDCLQMLE----------------------------EKRPDIL   51 (123)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHTS--TTEEEEEEESSHHHHHHHHH----------------------------HHCCSEE
T ss_pred             cEEEEEeCCHHHHHHHHHHHHhC--CCcEEEEEECCHHHHHHHHH----------------------------hcCCCEE
Confidence            47899999999999999998532  334443  568888776542                            2469999


Q ss_pred             EEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcC
Q 038592          364 MVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDF  399 (478)
Q Consensus       364 ivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~  399 (478)
                      ++|+.=++           +---++++.+++.....
T Consensus        52 llD~~mP~-----------~dG~e~~~~ir~~~~~~   76 (123)
T d1dz3a_          52 LLDIIMPH-----------LDGLAVLERIRAGFEHQ   76 (123)
T ss_dssp             EEESCCSS-----------SCHHHHHHHHHHHCSSC
T ss_pred             EEcCCCCC-----------CCHHHHHHHHHhcCCCC
Confidence            99985432           23478999998766543

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=87.70  E-value=0.31  Score=42.83  Aligned_cols=44  Identities=18%  Similarity=0.210  Sum_probs=36.9

Q ss_pred             CCeEEEEeCch-hHHHHHHHhhCCCEEEEEECChHHHHHHHHhcC
Q 038592          263 RPKALCVGVGG-GALVSFLRTQLDFEVVGVEMDEVVLRVARQYFG  306 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg  306 (478)
                      |.+|||||+|. |.-+......++.+|++.|+++..++..+..++
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~   73 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGG   73 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTC
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhc
Confidence            78999999994 555555566679999999999999999988765

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.70  E-value=0.95  Score=38.97  Aligned_cols=42  Identities=19%  Similarity=0.218  Sum_probs=33.9

Q ss_pred             CCeEEEEeCchh--HHHHHHHhhCCCEEEEEECChHHHHHHHHh
Q 038592          263 RPKALCVGVGGG--ALVSFLRTQLDFEVVGVEMDEVVLRVARQY  304 (478)
Q Consensus       263 ~~~VLvIGlGgG--~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~  304 (478)
                      ..+|||-|.+||  ..+--|.+..+.+|.++--+++-.+.+++.
T Consensus        32 g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~l   75 (176)
T d1xa0a2          32 RGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVL   75 (176)
T ss_dssp             GCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHT
T ss_pred             CCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhc
Confidence            458999996654  566667777899999999999999999875

>d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Nitrate/nitrite response regulator (NarL), receiver domain
species: Escherichia coli [TaxId: 562]

Probab=87.26  E-value=1.7  Score=35.21  Aligned_cols=77  Identities=14%  Similarity=0.113  Sum_probs=54.2

Q ss_pred             CEEEEEECChHHHHHHHHhcCCCCCCCeEE--EEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEE
Q 038592          286 FEVVGVEMDEVVLRVARQYFGLEDGEFLQV--SVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVI  363 (478)
Q Consensus       286 ~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v--~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvI  363 (478)
                      .+|..||=++.+.+.-++++...  +...+  ...||.+.++.+.                            ..+||+|
T Consensus         3 i~VLiVDD~~~~r~~l~~~L~~~--~~~~~v~~a~~~~~al~~~~----------------------------~~~~Dlv   52 (138)
T d1a04a2           3 ATILLIDDHPMLRTGVKQLISMA--PDITVVGEASNGEQGIELAE----------------------------SLDPDLI   52 (138)
T ss_dssp             EEEEEECSCHHHHHHHHHHHTTC--TTEEEEEEESSHHHHHHHHH----------------------------HHCCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHhC--CCcEEEEEECCHHHHHHHHH----------------------------hcCCCEE
Confidence            58999999999999999988643  33444  3779999887642                            2469999


Q ss_pred             EEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          364 MVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       364 ivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                      ++|+.-++           .---++++.+++.- +..-+++
T Consensus        53 llD~~mP~-----------~~G~el~~~ir~~~-~~~~viv   81 (138)
T d1a04a2          53 LLDLNMPG-----------MNGLETLDKLREKS-LSGRIVV   81 (138)
T ss_dssp             EEETTSTT-----------SCHHHHHHHHHHSC-CCSEEEE
T ss_pred             EEecCCCC-----------CCHHHHHHHHHhhC-CCCCEEE
Confidence            99986433           23467888888753 4444443

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.12  E-value=0.11  Score=43.63  Aligned_cols=43  Identities=14%  Similarity=0.233  Sum_probs=31.4

Q ss_pred             CCeEEEEeCchhHHHH--HHHhhCCCEEEEE--ECChHHHHHHHHhcC
Q 038592          263 RPKALCVGVGGGALVS--FLRTQLDFEVVGV--EMDEVVLRVARQYFG  306 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~~--~L~~~~~~~V~~V--EiDp~Vl~vA~~~Fg  306 (478)
                      .++|||||+|.-++.+  .|.+. +.+|++|  |++|++..++.++..
T Consensus        13 gkrvLViGgG~va~~ka~~Ll~~-GA~VtVvap~~~~~l~~~~~~~~~   59 (150)
T d1kyqa1          13 DKRILLIGGGEVGLTRLYKLMPT-GCKLTLVSPDLHKSIIPKFGKFIQ   59 (150)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGG-TCEEEEEEEEECTTHHHHHCGGGC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCCCHHHHHHHHhccc
Confidence            5899999999755443  22222 6788888  889999999877653

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.04  E-value=0.42  Score=41.81  Aligned_cols=41  Identities=20%  Similarity=0.289  Sum_probs=32.3

Q ss_pred             CeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhc
Q 038592          264 PKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYF  305 (478)
Q Consensus       264 ~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~F  305 (478)
                      ++|.|||+|  |.+++..+.. .+.+|+.+|.|++.++.|++..
T Consensus         5 kkvaViGaG~mG~~iA~~~a~-~G~~V~l~D~~~~~l~~a~~~i   47 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAA-TGHTVVLVDQTEDILAKSKKGI   47 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHh-CCCcEEEEECChHHHHHHHhhH
Confidence            699999999  4455554443 4789999999999999887653

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=86.10  E-value=0.71  Score=36.90  Aligned_cols=43  Identities=23%  Similarity=0.273  Sum_probs=31.8

Q ss_pred             CCCeEEEEeCch-hH-HHHHHHhhCCCEEEEEEC--------ChHHHHHHHHhc
Q 038592          262 FRPKALCVGVGG-GA-LVSFLRTQLDFEVVGVEM--------DEVVLRVARQYF  305 (478)
Q Consensus       262 ~~~~VLvIGlGg-G~-L~~~L~~~~~~~V~~VEi--------Dp~Vl~vA~~~F  305 (478)
                      .|++|+|||+|- |. ++..|+ .++.+|+.||.        |+++.+..++++
T Consensus        21 ~p~~v~IiGgG~iG~E~A~~l~-~~g~~Vtlv~~~~~il~~~d~~~~~~~~~~l   73 (117)
T d1onfa2          21 ESKKIGIVGSGYIAVELINVIK-RLGIDSYIFARGNRILRKFDESVINVLENDM   73 (117)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHH-TTTCEEEEECSSSSSCTTSCHHHHHHHHHHH
T ss_pred             CCCEEEEECCchHHHHHHHHHH-hccccceeeehhccccccccHHHHHHHHHHH
Confidence            378999999994 44 555554 45899999996        666777777665

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=85.98  E-value=1.7  Score=37.15  Aligned_cols=37  Identities=11%  Similarity=0.021  Sum_probs=25.7

Q ss_pred             CCeEEEEeCchhH----HHHHHHhhCC---CEEEEEECChHHHH
Q 038592          263 RPKALCVGVGGGA----LVSFLRTQLD---FEVVGVEMDEVVLR  299 (478)
Q Consensus       263 ~~~VLvIGlGgG~----L~~~L~~~~~---~~V~~VEiDp~Vl~  299 (478)
                      ..+|.+||+|+..    +...+.....   .+|..+|+|++-++
T Consensus         3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~   46 (167)
T d1u8xx1           3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQD   46 (167)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHH
T ss_pred             CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHH
Confidence            3589999998542    3333443333   48999999998876

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=85.71  E-value=2.2  Score=34.79  Aligned_cols=33  Identities=24%  Similarity=0.521  Sum_probs=26.0

Q ss_pred             CCeEEEEe-Cc--hhHHHHHHHhhCCCEEEEEECChH
Q 038592          263 RPKALCVG-VG--GGALVSFLRTQLDFEVVGVEMDEV  296 (478)
Q Consensus       263 ~~~VLvIG-lG--gG~L~~~L~~~~~~~V~~VEiDp~  296 (478)
                      .++|.+|| +|  |+.+++.|.+. +.+|.++|.++.
T Consensus         9 ~~kI~iIGg~G~mG~~la~~L~~~-G~~V~~~d~~~~   44 (152)
T d2pv7a2           9 IHKIVIVGGYGKLGGLFARYLRAS-GYPISILDREDW   44 (152)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTT-TCCEEEECTTCG
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHHc-CCCcEecccccc
Confidence            57999999 78  67788777654 678999988764

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=85.49  E-value=1.5  Score=35.08  Aligned_cols=96  Identities=17%  Similarity=0.045  Sum_probs=61.4

Q ss_pred             CeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHH--HHHHHHhhhcCCCCCCCC
Q 038592          264 PKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIE--FLEKLARQIVGKNPDSFG  340 (478)
Q Consensus       264 ~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~--~l~~~~~~~~~~~~~~~~  340 (478)
                      +.++|+|.|  .++..+.+.+ +..|.+||.|+...+.++..       .+.++.||+.+  .++++             
T Consensus         1 kHivI~G~g--~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~~-------~~~~i~Gd~~~~~~L~~a-------------   58 (129)
T d2fy8a1           1 RHVVICGWS--ESTLECLRELRGSEVFVLAEDENVRKKVLRS-------GANFVHGDPTRVSDLEKA-------------   58 (129)
T ss_dssp             CCEEEESCC--HHHHHHHHTSCGGGEEEEESCTTHHHHHHHT-------TCEEEESCTTSHHHHHHT-------------
T ss_pred             CEEEEECCC--HHHHHHHHHHcCCCCEEEEcchHHHHHHHhc-------CccccccccCCHHHHHHh-------------
Confidence            368888875  4455555555 56889999999999887643       36789999854  55541             


Q ss_pred             cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592          341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP  409 (478)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~  409 (478)
                                     .-.+.+.+++...+ |            ...-+.-...+.|.|..-++..+..+
T Consensus        59 ---------------~i~~A~~vi~~~~~-d------------~~n~~~~~~~r~~~~~~~iia~~~~~   99 (129)
T d2fy8a1          59 ---------------NVRGARAVIVNLES-D------------SETIHCILGIRKIDESVRIIAEAERY   99 (129)
T ss_dssp             ---------------TCTTCSEEEECCSS-H------------HHHHHHHHHHHHHCSSSCEEEECSSG
T ss_pred             ---------------hhhcCcEEEEeccc-h------------hhhHHHHHHHHHHCCCceEEEEEcCH
Confidence                           34557888884322 1            12334444556678887777665544

>d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator Sin1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.11  E-value=2.3  Score=34.20  Aligned_cols=80  Identities=18%  Similarity=0.162  Sum_probs=50.2

Q ss_pred             CEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEE
Q 038592          286 FEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMV  365 (478)
Q Consensus       286 ~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIiv  365 (478)
                      .+|-+||=|+.+.++.++.+.-..-..+. ...||.+-++.+.+..                       .....||+|++
T Consensus         2 irVLvVDD~~~~~~~l~~~L~~~g~~~v~-~a~~g~eAl~~l~~~~-----------------------~~~~~~dlill   57 (128)
T d2r25b1           2 VKILVVEDNHVNQEVIKRMLNLEGIENIE-LACDGQEAFDKVKELT-----------------------SKGENYNMIFM   57 (128)
T ss_dssp             SCEEEECSCHHHHHHHHHHHHHTTCCCEE-EESSHHHHHHHHHHHH-----------------------HHTCCCSEEEE
T ss_pred             eEEEEEeCCHHHHHHHHHHHHHcCCeEEE-EEcChHHHHHHHHhhh-----------------------hccCCCCEEEE
Confidence            57899999999999988887522112233 3466666554332100                       03567999999


Q ss_pred             eCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCc
Q 038592          366 DLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFG  400 (478)
Q Consensus       366 Dv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~G  400 (478)
                      |+.=++           +---+.++.+++.....-
T Consensus        58 D~~mP~-----------~dG~el~~~ir~~~~~~~   81 (128)
T d2r25b1          58 DVQMPK-----------VDGLLSTKMIRRDLGYTS   81 (128)
T ss_dssp             CSCCSS-----------SCHHHHHHHHHHHSCCCS
T ss_pred             EeCCCC-----------CCHHHHHHHHHHccCCCC
Confidence            975432           244678888887655443

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=83.79  E-value=7.3  Score=32.35  Aligned_cols=97  Identities=19%  Similarity=0.218  Sum_probs=58.1

Q ss_pred             CCeEEEEeCch--hHHHHHHHhhCCCEEEEEECCh-HHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592          263 RPKALCVGVGG--GALVSFLRTQLDFEVVGVEMDE-VVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSF  339 (478)
Q Consensus       263 ~~~VLvIGlGg--G~L~~~L~~~~~~~V~~VEiDp-~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~  339 (478)
                      .++||+||.|.  -..+..|..+--.+++++--+. ...++|+++ +..     .+-..|-.+.+               
T Consensus        24 ~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~-~~~-----~~~~~~~~~~l---------------   82 (159)
T d1gpja2          24 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL-GGE-----AVRFDELVDHL---------------   82 (159)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH-TCE-----ECCGGGHHHHH---------------
T ss_pred             cCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhh-hcc-----cccchhHHHHh---------------
Confidence            57999999973  2345555554224899999885 445567665 321     11123333333               


Q ss_pred             CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHcc-CcCcEEEEEeCC
Q 038592          340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLIL-SDFGIFVMNVIP  408 (478)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L-~~~Gilv~N~~~  408 (478)
                                        ..||+||.-..+          |..+++.+.++...+.- ....++++.+.-
T Consensus        83 ------------------~~~Divi~atss----------~~~ii~~~~i~~~~~~r~~~~~~~iiDlav  124 (159)
T d1gpja2          83 ------------------ARSDVVVSATAA----------PHPVIHVDDVREALRKRDRRSPILIIDIAN  124 (159)
T ss_dssp             ------------------HTCSEEEECCSS----------SSCCBCHHHHHHHHHHCSSCCCEEEEECCS
T ss_pred             ------------------ccCCEEEEecCC----------CCccccHhhhHHHHHhcccCCCeEEEeecC
Confidence                              249999983221          34467788886655443 345689999843

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=83.79  E-value=0.55  Score=40.72  Aligned_cols=112  Identities=14%  Similarity=0.141  Sum_probs=65.1

Q ss_pred             CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC-----CCCCCeEEEEchHHHHHHHHHhhhcCCC
Q 038592          263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL-----EDGEFLQVSVGDAIEFLEKLARQIVGKN  335 (478)
Q Consensus       263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~-----~~d~rl~v~v~Dg~~~l~~~~~~~~~~~  335 (478)
                      -++|.|||+|  |.+++..+... +.+|+.+|+|++.++.+.++..-     ....++  .-.+.-..+..+...     
T Consensus         4 I~~vaViGaG~mG~~iA~~~a~~-G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~--~~~~~~~~~~~i~~~-----   75 (186)
T d1wdka3           4 VKQAAVLGAGIMGGGIAYQSASK-GTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRM--TPAKMAEVLNGIRPT-----   75 (186)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHT-TCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSS--CHHHHHHHHHHEEEE-----
T ss_pred             CCEEEEECcCHHHHHHHHHHHhC-CCeEEEEECCHHHHhhhhhhhhhhHHhhhccccc--chhhhhhhhceeecc-----
Confidence            4689999999  34455444433 78999999999998887665310     000100  011112222211000     


Q ss_pred             CCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC-ChHHHHHHHHHccCcCcEEEEEeCCCC
Q 038592          336 PDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF-VRKDVLLAARLILSDFGIFVMNVIPPN  410 (478)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f-~~~efl~~~~~~L~~~Gilv~N~~~~~  410 (478)
                       ...               ..-..-|+|+--+            |+.+ ...+.|..+-+.+.++=+|+.|..+-.
T Consensus        76 -~~~---------------~~~~~adlViEav------------~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~  123 (186)
T d1wdka3          76 -LSY---------------GDFGNVDLVVEAV------------VENPKVKQAVLAEVENHVREDAILASNTSTIS  123 (186)
T ss_dssp             -SSS---------------TTGGGCSEEEECC------------CSCHHHHHHHHHHHHTTSCTTCEEEECCSSSC
T ss_pred             -ccc---------------ccccccceeeeee------------cchHHHHHHHHHHHHhhcCCCeeEEecccccc
Confidence             000               0112357777622            4443 457899999999999999999987764

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=83.38  E-value=0.96  Score=37.30  Aligned_cols=43  Identities=12%  Similarity=0.025  Sum_probs=31.7

Q ss_pred             CCeEEEEeCc-hh-HHHHHHHhhCCCEEEEEECChHHHHHHHHhcC
Q 038592          263 RPKALCVGVG-GG-ALVSFLRTQLDFEVVGVEMDEVVLRVARQYFG  306 (478)
Q Consensus       263 ~~~VLvIGlG-gG-~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg  306 (478)
                      .++|||||+| .| .++..|.+. +.+|+++|.+++-.+...+.|+
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~-g~~V~v~dr~~~~a~~l~~~~~   46 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDS-GIKVTVACRTLESAKKLSAGVQ   46 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTT-TCEEEEEESCHHHHHHHHTTCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEECChHHHHHHHhccc
Confidence            3799999997 23 355555543 5799999999998887766654

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=83.35  E-value=0.34  Score=42.22  Aligned_cols=32  Identities=16%  Similarity=0.265  Sum_probs=22.4

Q ss_pred             CeEEEEeCchhHHH-HHHHhhCCCEEEEEECCh
Q 038592          264 PKALCVGVGGGALV-SFLRTQLDFEVVGVEMDE  295 (478)
Q Consensus       264 ~~VLvIGlGgG~L~-~~L~~~~~~~V~~VEiDp  295 (478)
                      +||+|||.|-++|+ .+.....+.+|+++|-.+
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            68999999955444 333333478999999653

>d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Hypothetical protein BH3024
species: Bacillus halodurans [TaxId: 86665]

Probab=82.76  E-value=1.4  Score=35.08  Aligned_cols=78  Identities=13%  Similarity=0.062  Sum_probs=54.1

Q ss_pred             CEEEEEECChHHHHHHHHhcCCCCCCCeEE-EEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEE
Q 038592          286 FEVVGVEMDEVVLRVARQYFGLEDGEFLQV-SVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIM  364 (478)
Q Consensus       286 ~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v-~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi  364 (478)
                      .+|-+||=|+.+.+..++++.-   ...+| ...||.+.++.+.                           ....||+|+
T Consensus         3 ~rILvVdDd~~~~~~l~~~L~~---~g~~v~~~~~~~~al~~l~---------------------------~~~~~dlii   52 (118)
T d2b4aa1           3 FRVTLVEDEPSHATLIQYHLNQ---LGAEVTVHPSGSAFFQHRS---------------------------QLSTCDLLI   52 (118)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHH---TTCEEEEESSHHHHHHTGG---------------------------GGGSCSEEE
T ss_pred             CEEEEEECCHHHHHHHHHHHHh---cCCCeEEECCHHHHHHHHH---------------------------hcCCCCEEE
Confidence            6899999999999999988752   22344 4567888776532                           234699999


Q ss_pred             EeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          365 VDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       365 vDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                      +|+.-++.           ---++++.+++.-..-.++++
T Consensus        53 lD~~lp~~-----------~G~el~~~ir~~~~~~pii~l   81 (118)
T d2b4aa1          53 VSDQLVDL-----------SIFSLLDIVKEQTKQPSVLIL   81 (118)
T ss_dssp             EETTCTTS-----------CHHHHHHHHTTSSSCCEEEEE
T ss_pred             EeCCCCCC-----------CHHHHHHHHHhcCCCCcEEEE
Confidence            99865432           346788888876544456655

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.74  E-value=0.46  Score=41.85  Aligned_cols=35  Identities=20%  Similarity=0.272  Sum_probs=24.7

Q ss_pred             CCeEEEEeCchhHHH-HHHHhhCCCEEEEEECChHH
Q 038592          263 RPKALCVGVGGGALV-SFLRTQLDFEVVGVEMDEVV  297 (478)
Q Consensus       263 ~~~VLvIGlGgG~L~-~~L~~~~~~~V~~VEiDp~V  297 (478)
                      ..||+|||+|-++|+ .......+.+|+++|-.+.+
T Consensus         5 ~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~   40 (449)
T d2dw4a2           5 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV   40 (449)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            678999999955544 33333347899999987543

>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoB receiver domain
species: Thermotoga maritima [TaxId: 2336]

Probab=82.61  E-value=2.1  Score=33.88  Aligned_cols=78  Identities=15%  Similarity=0.059  Sum_probs=52.8

Q ss_pred             CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEE
Q 038592          285 DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIM  364 (478)
Q Consensus       285 ~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi  364 (478)
                      +.+|-.||=|+.+.+..++++.-. +-. -....||.+.++.+.                            ..+||+|+
T Consensus         1 nirILiVdDd~~~~~~l~~~L~~~-g~~-v~~a~~~~~al~~l~----------------------------~~~~dlil   50 (122)
T d1kgsa2           1 NVRVLVVEDERDLADLITEALKKE-MFT-VDVCYDGEEGMYMAL----------------------------NEPFDVVI   50 (122)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHT-TCE-EEEESSHHHHHHHHH----------------------------HSCCSEEE
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHC-CCE-EEEEcchHHHHHHHH----------------------------hhCccccc
Confidence            368999999999999999887421 112 335788888776642                            35799999


Q ss_pred             EeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEE
Q 038592          365 VDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFV  403 (478)
Q Consensus       365 vDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv  403 (478)
                      +|+.-++           .-..++++.++..-..--+++
T Consensus        51 lD~~mp~-----------~~g~~~~~~lr~~~~~~piI~   78 (122)
T d1kgsa2          51 LDIMLPV-----------HDGWEILKSMRESGVNTPVLM   78 (122)
T ss_dssp             EESCCSS-----------SCHHHHHHHHHHTTCCCCEEE
T ss_pred             ccccccc-----------chhHHHHHHHHhcCCCCcEEE
Confidence            9985433           234678888876543333444

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=81.92  E-value=0.36  Score=40.79  Aligned_cols=32  Identities=19%  Similarity=0.385  Sum_probs=22.2

Q ss_pred             CeEEEEeCchhHHH--HHHHhhCCC-EEEEEECChH
Q 038592          264 PKALCVGVGGGALV--SFLRTQLDF-EVVGVEMDEV  296 (478)
Q Consensus       264 ~~VLvIGlGgG~L~--~~L~~~~~~-~V~~VEiDp~  296 (478)
                      ++|+|||+|-++|+  ..|.+ .+. +|+++|-++.
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~-~G~~~V~vlE~~~~   35 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSE-AGITDLLILEATDH   35 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHH-TTCCCEEEECSSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHh-CCCCcEEEEECCCC
Confidence            48999999955543  33443 465 6999998754

>d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator DrrB
species: Thermotoga maritima [TaxId: 2336]

Probab=81.75  E-value=3.7  Score=32.30  Aligned_cols=74  Identities=12%  Similarity=0.194  Sum_probs=51.6

Q ss_pred             EEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEe
Q 038592          287 EVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVD  366 (478)
Q Consensus       287 ~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivD  366 (478)
                      +|-.||=|+.+.+..++++.-  ... .....+|.+.+.+                              ..+||+|++|
T Consensus         4 kILiVDDd~~~~~~l~~~L~~--~g~-v~~~~~~~~al~~------------------------------~~~~dlillD   50 (120)
T d1p2fa2           4 KIAVVDDDKNILKKVSEKLQQ--LGR-VKTFLTGEDFLND------------------------------EEAFHVVVLD   50 (120)
T ss_dssp             EEEEECSCHHHHHHHHHHHTT--TEE-EEEESSHHHHHHC------------------------------CSCCSEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHh--CCE-EEEECCHHHHHhc------------------------------CCCCCEEEEe
Confidence            789999999999999998863  223 3457789888742                              3469999999


Q ss_pred             CCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          367 LDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       367 v~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                      +.-++           .---++++.++..=..--++++
T Consensus        51 ~~mP~-----------~~G~~~~~~lr~~~~~~~ii~i   77 (120)
T d1p2fa2          51 VMLPD-----------YSGYEICRMIKETRPETWVILL   77 (120)
T ss_dssp             SBCSS-----------SBHHHHHHHHHHHCTTSEEEEE
T ss_pred             Ccccc-----------cchhHHHHHHhhcCCCCcEEEE
Confidence            85433           2336788888765443344444

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=81.42  E-value=1.6  Score=34.32  Aligned_cols=43  Identities=16%  Similarity=0.148  Sum_probs=29.9

Q ss_pred             CCeEEEEeCch-hH-HHHHHHhhC--CCEEEEEECC--------hHHHHHHHHhc
Q 038592          263 RPKALCVGVGG-GA-LVSFLRTQL--DFEVVGVEMD--------EVVLRVARQYF  305 (478)
Q Consensus       263 ~~~VLvIGlGg-G~-L~~~L~~~~--~~~V~~VEiD--------p~Vl~vA~~~F  305 (478)
                      |++++|||+|. |. ++.++..+.  +.+|+.+|..        |++.+..++++
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l   72 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQL   72 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceecccccccccccchhhHHHHHHH
Confidence            78999999994 33 566666553  6799999975        44555555554

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.31  E-value=2.3  Score=35.95  Aligned_cols=59  Identities=10%  Similarity=0.052  Sum_probs=37.6

Q ss_pred             CeEEEEeCch-hH-HHHHHHhhCCCEEEEE-ECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHH
Q 038592          264 PKALCVGVGG-GA-LVSFLRTQLDFEVVGV-EMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLE  325 (478)
Q Consensus       264 ~~VLvIGlGg-G~-L~~~L~~~~~~~V~~V-EiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~  325 (478)
                      .|+.+||+|. |. ....+....+++|++| |.|++-.+...+-|+++...   -...|..+.++
T Consensus         2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~ll~   63 (184)
T d1ydwa1           2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPEST---KIHGSYESLLE   63 (184)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTC---EEESSHHHHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccce---eecCcHHHhhh
Confidence            4899999984 32 3344544446788864 99998777666666664322   24567666653

>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Thermotoga maritima [TaxId: 2336]

Probab=81.22  E-value=1.7  Score=34.30  Aligned_cols=78  Identities=17%  Similarity=0.127  Sum_probs=54.2

Q ss_pred             CCEEEEEECChHHHHHHHHhcCCCCCCCeEEE--EchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeE
Q 038592          285 DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVS--VGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDV  362 (478)
Q Consensus       285 ~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~--v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDv  362 (478)
                      +.+|-.||=|+.+.+..++++.-   ..++++  ..||.+.++.+.                            ..+||+
T Consensus         1 GkrILivDD~~~~~~~l~~~L~~---~g~~v~~~a~~~~~al~~~~----------------------------~~~~dl   49 (118)
T d1u0sy_           1 GKRVLIVDDAAFMRMMLKDIITK---AGYEVAGEATNGREAVEKYK----------------------------ELKPDI   49 (118)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHHH----------------------------HHCCSE
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHH---cCCceEEEECCHHHHHHHHH----------------------------hccCCE
Confidence            35789999999999999988742   235543  478988887643                            246999


Q ss_pred             EEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592          363 IMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM  404 (478)
Q Consensus       363 IivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~  404 (478)
                      |++|+.-++.           ---++++.+++.-..--++++
T Consensus        50 iilD~~mp~~-----------~G~e~~~~ir~~~~~~pvi~l   80 (118)
T d1u0sy_          50 VTMDITMPEM-----------NGIDAIKEIMKIDPNAKIIVC   80 (118)
T ss_dssp             EEEECSCGGG-----------CHHHHHHHHHHHCTTCCEEEE
T ss_pred             EEEecCCCCC-----------CHHHHHHHHHHhCCCCcEEEE
Confidence            9999854332           346788888776543345544

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=81.13  E-value=2.7  Score=34.34  Aligned_cols=55  Identities=15%  Similarity=0.056  Sum_probs=37.7

Q ss_pred             CeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHH-HHHHHhcCCCCCCCeEEEEchHHHH
Q 038592          264 PKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVL-RVARQYFGLEDGEFLQVSVGDAIEF  323 (478)
Q Consensus       264 ~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl-~vA~~~Fg~~~d~rl~v~v~Dg~~~  323 (478)
                      -+++|+|.|  |-.++..|.+. +.+|++||.||+-. +.+.+...    ..+.++.||+.+-
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~-~~~v~vId~d~~~~~~~~~~~~~----~~~~vi~Gd~~d~   61 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQR-GQNVTVISNLPEDDIKQLEQRLG----DNADVIPGDSNDS   61 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHC----TTCEEEESCTTSH
T ss_pred             CEEEEECCCHHHHHHHHHHHHc-CCCEEEEeccchhHHHHHHHhhc----CCcEEEEccCcch
Confidence            479999998  23355555543 68999999998643 34444332    3578999998763

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=81.11  E-value=0.76  Score=37.61  Aligned_cols=34  Identities=24%  Similarity=0.337  Sum_probs=26.1

Q ss_pred             CCeEEEEeCchhH--HHHHHHhhC-CCEEEEEECChH
Q 038592          263 RPKALCVGVGGGA--LVSFLRTQL-DFEVVGVEMDEV  296 (478)
Q Consensus       263 ~~~VLvIGlGgG~--L~~~L~~~~-~~~V~~VEiDp~  296 (478)
                      .+||+|||+|-.+  ++..|++.. +.+|+.+|-++.
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~   38 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD   38 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence            4799999999544  556777764 689999998773

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=81.08  E-value=3.5  Score=33.76  Aligned_cols=42  Identities=14%  Similarity=0.116  Sum_probs=31.5

Q ss_pred             eEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcC
Q 038592          265 KALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFG  306 (478)
Q Consensus       265 ~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg  306 (478)
                      +|.+||+|  |.+++.-|.+.-..+|.+.+.+++.++...+.++
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~   45 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELG   45 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTC
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhcc
Confidence            78999999  5556665655544799999999988876655544

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=80.93  E-value=0.72  Score=40.48  Aligned_cols=33  Identities=21%  Similarity=0.133  Sum_probs=23.6

Q ss_pred             CCeEEEEeCch-hHH-HHHHHhhCCCEEEEEECChH
Q 038592          263 RPKALCVGVGG-GAL-VSFLRTQLDFEVVGVEMDEV  296 (478)
Q Consensus       263 ~~~VLvIGlGg-G~L-~~~L~~~~~~~V~~VEiDp~  296 (478)
                      ..||+|||.|- |.. +..|++ .+.+|+++|-++.
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~-~G~~v~v~Er~~~   38 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRD-AGVDVDVYERSPQ   38 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHH-CCCCEEEEeCCCC
Confidence            67999999994 443 333433 4899999997653

>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein FixJ, receiver domain
species: Rhizobium meliloti [TaxId: 382]

Probab=80.55  E-value=6.7  Score=30.82  Aligned_cols=81  Identities=19%  Similarity=0.064  Sum_probs=54.0

Q ss_pred             CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEE
Q 038592          285 DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIM  364 (478)
Q Consensus       285 ~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi  364 (478)
                      +.+|-.||=|+.+.+.-++++.-. +-++ ....+|.+.++.+                            ...+||+|+
T Consensus         3 ~~~ILiVDDd~~~~~~l~~~L~~~-g~~v-~~a~~~~~al~~~----------------------------~~~~~dlvi   52 (123)
T d1dbwa_           3 DYTVHIVDDEEPVRKSLAFMLTMN-GFAV-KMHQSAEAFLAFA----------------------------PDVRNGVLV   52 (123)
T ss_dssp             CCEEEEEESSHHHHHHHHHHHHHT-TCEE-EEESCHHHHHHHG----------------------------GGCCSEEEE
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHC-CCEE-EEECCHHHHHHHH----------------------------hhcCCcEEE
Confidence            468999999999999988887421 1123 3466888877653                            345799999


Q ss_pred             EeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeC
Q 038592          365 VDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVI  407 (478)
Q Consensus       365 vDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~  407 (478)
                      +|+.=++.           --.++++.+++.- ++--+++-..
T Consensus        53 ~D~~mp~~-----------~G~e~~~~lr~~~-~~~~iI~lt~   83 (123)
T d1dbwa_          53 TDLRMPDM-----------SGVELLRNLGDLK-INIPSIVITG   83 (123)
T ss_dssp             EECCSTTS-----------CHHHHHHHHHHTT-CCCCEEEEEC
T ss_pred             EeccCccc-----------cchHHHHHHHhcC-CCCeEEEEEe
Confidence            99865432           3478999998754 4333333333

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=80.39  E-value=1.4  Score=34.85  Aligned_cols=34  Identities=24%  Similarity=0.236  Sum_probs=25.1

Q ss_pred             CCeEEEEeCch-hH-HHHHHHhhCCCEEEEEECChHH
Q 038592          263 RPKALCVGVGG-GA-LVSFLRTQLDFEVVGVEMDEVV  297 (478)
Q Consensus       263 ~~~VLvIGlGg-G~-L~~~L~~~~~~~V~~VEiDp~V  297 (478)
                      |++|+|||+|- |. ++.++++ ++.+|+.||..+.+
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~-~G~~Vtlve~~~~~   56 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVING-LGAKTHLFEMFDAP   56 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSSS
T ss_pred             CCEEEEECCChhhHHHHHHhhc-cccEEEEEeecchh
Confidence            78999999993 43 5555554 58899999985543