Citrus Sinensis ID: 038596

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160---
Protein Sequence
PRLVNMCKYMGISPFGTDSYLRYMLRKRLQWIKNDDKLIQAEGVESLSEAELREDCRERGMLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLRPEEAVQATLSSLPDEVVDTVGVTALPSEDSVSERRRKLEYLAMQEELIKEEEEKEGKEL
Secondary Structure (PSIPRED)
cHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccHHHHHHHHHHHccHHHHHHEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
prlvnmckymgispfgtdSYLRYMLRKRLQWIKNDDKLIQAEGVESLSEAELREDCRERGMLGLLSVEEMRQQLRDWLDlslnhsvpssLLILSRAFtvsgklrpEEAVQATLsslpdevvdtvgvtalpsedsvSERRRKLEYLAMQEELIKEEEEKEGKEL
Flexible Loop (DISEMBL)
prlvnmckymgispfgtdSYLRYMLRKRLQWIKNDDKLIQAEgveslseaelredCRERGMLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLRPEEAVQAtlsslpdevvdtvgvtalpsedsvserrRKLEYLAMQEElikeeeekegkel
Low Complexity Region (SEG)
PRLVNMCKYMGISPFGTDSYLRYMLRKRLQWIKNDDKLIQAEGVESLSEAELREDCRERGMLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLRPEEAVQATLSSLPDEVVDTVGVTALPSEDSVSERRRKLEYLAMQeelikeeeekegkeL
Disordered region (IsUnstruct)
***VNMCKYMGISPFGTDSYLRYMLRKRLQWIKNDDKLIQAEGV***********CRERGMLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKL*****************VDTV***************************************
Disordered Region (DISOPRED)
PRLVNMCKYMGISPFGTDSYLRYMLRKRLQWIKNDDKLIQAEGVESLSEAELREDCRERGMLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLR***AV**TLSSLPDEVV******************************************
Disordered Region (DISEMBL)
PRLVNMCKYMGISPFGTDSYLRYMLRKRLQWIKNDDKLIQAEGVESLSEAELREDCRERGMLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLRPEEAVQATLSSLPDEVVDTVGVTALPSEDSVSERRRKLEYLAMQEELIK**********
Disordered Region (DISPRO)
PRLVNMCKYMGISPFGTDSYLRYMLRKRLQWIKNDDKLIQAEGVESLSEAELREDCRERGMLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLRPEEAVQATLSSLPDEVVDTVGVTALPSEDSVSERRRKLEYLAMQEELIKEEEEK*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
PRLVNMCKYMGISPFGTDSYLRYMLRKRLQWIKNDDKLIQAEGVESLSEAELREDCRERGMLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLRPEEAVQATLSSLPDEVVDTVGVTALPSEDSVSERRRKLEYLAMQEELIKEEEEKEGKEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	163	2.2.26 [Sep-21-2011]
Q5ZK33	752	LETM1 and EF-hand domain-	yes	no	0.975	0.211	0.434	3e-28
Q5XIN6	739	LETM1 and EF-hand domain-	yes	no	0.987	0.217	0.419	4e-27
Q9Z2I0	738	LETM1 and EF-hand domain-	yes	no	0.987	0.218	0.413	5e-27
O95202	739	LETM1 and EF-hand domain-	yes	no	0.987	0.217	0.426	2e-26
Q0VCA3	732	LETM1 and EF-hand domain-	yes	no	0.987	0.219	0.420	1e-25
Q1LY46	757	LETM1 and EF-hand domain-	yes	no	0.950	0.204	0.397	3e-25
Q0VA06	760	LETM1 and EF-hand domain-	yes	no	0.975	0.209	0.403	1e-21
Q08179	573	Mitochondrial distributio	yes	no	0.699	0.198	0.444	6e-21
O13920	485	LETM1 domain-containing p	yes	no	0.840	0.282	0.395	6e-21
Q5PQQ5	459	LETM1 domain-containing p	no	no	0.595	0.211	0.510	3e-20

>sp|Q5ZK33|LETM1_CHICK LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Gallus gallus GN=LETM1 PE=2 SV=1

 Score =  124 bits (310), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 98/161 (60%), Gaps = 2/161 (1%)

Query: 1   PRLVNMCKYMGISPFGTDSYLRYMLRKRLQWIKNDDKLIQAEGVESLSEAELREDCRERG 60
           P+LV +CK + +   GT+++LR+ L  RL+ IK DDK+I  EGV+SL+  EL+  CR RG
Sbjct: 321 PQLVALCKLLELQSIGTNNFLRFQLTMRLRTIKADDKMIAEEGVDSLTVKELQAACRARG 380

Query: 61  MLGLLSVEE-MRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLRPEEAVQATLSSLPDE 119
           M  L   EE +R+QL+ WLDL LN  +P+SLLILSRA  +   L P + ++ TL +LP+ 
Sbjct: 381 MRALGVTEERLREQLKQWLDLHLNQEIPTSLLILSRAMYLPDTLSPADQLKTTLQTLPES 440

Query: 120 VVDTVGVTALPSEDSVSERRRKLEYLAMQEELI-KEEEEKE 159
           V     V     E    + + +LE    +E  I KE EEKE
Sbjct: 441 VAKEAQVKVAEVEGEKVDNKARLEATLQEEAAIRKENEEKE 481

Crucial for the maintenance of mitochondrial tubular networks and for the assembly of the supercomplexes of the respiratory chain.
Gallus gallus (taxid: 9031)

>sp|Q5XIN6|LETM1_RAT LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Rattus norvegicus GN=Letm1 PE=1 SV=1

 Score =  120 bits (301), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 68/162 (41%), Positives = 99/162 (61%), Gaps = 1/162 (0%)

Query: 1   PRLVNMCKYMGISPFGTDSYLRYMLRKRLQWIKNDDKLIQAEGVESLSEAELREDCRERG 60
           P+LV +CK + +   GT+++LR+ L  RL+ IK DDKLI  EGV+SL+  EL+  CR RG
Sbjct: 323 PQLVALCKLLELQSIGTNNFLRFQLTMRLRSIKADDKLISEEGVDSLTVKELQAACRARG 382

Query: 61  MLGLLSVEE-MRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLRPEEAVQATLSSLPDE 119
           M  L   E+ ++ QL+ WLDL L H +P+SLLILSRA  +   L P + +++TL +LP+ 
Sbjct: 383 MRALGVTEDRLKGQLKQWLDLHLYHEIPTSLLILSRAMYLPDTLSPADQLKSTLQTLPEI 442

Query: 120 VVDTVGVTALPSEDSVSERRRKLEYLAMQEELIKEEEEKEGK 161
           V     V A   E    + + KLE    +E  I++E  +E K
Sbjct: 443 VAKEAQVKAAEVEGEQVDNKAKLEATLQEEAAIQQEHLEELK 484

Crucial for the maintenance of mitochondrial tubular networks and for the assembly of the supercomplexes of the respiratory chain. Required for the maintenance of the tubular shape and cristae organization.

Rattus norvegicus (taxid: 10116)

>sp|Q9Z2I0|LETM1_MOUSE LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Mus musculus GN=Letm1 PE=2 SV=1

 Score =  120 bits (300), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 67/162 (41%), Positives = 99/162 (61%), Gaps = 1/162 (0%)

Query: 1   PRLVNMCKYMGISPFGTDSYLRYMLRKRLQWIKNDDKLIQAEGVESLSEAELREDCRERG 60
           P+LV +CK + +   GT+++LR+ L  RL+ IK DDKLI  EGV+SL+  EL+  CR RG
Sbjct: 323 PQLVALCKLLELQSIGTNNFLRFQLTMRLRSIKADDKLISEEGVDSLTVKELQAACRARG 382

Query: 61  MLGLLSVEE-MRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLRPEEAVQATLSSLPDE 119
           M  L   E+ ++ QL+ WLDL L+H +P+SLLILSRA  +   L P + +++TL +LP+ 
Sbjct: 383 MRALGVTEDRLKGQLKQWLDLHLHHEIPTSLLILSRAMYLPDTLSPADQLKSTLQTLPEI 442

Query: 120 VVDTVGVTALPSEDSVSERRRKLEYLAMQEELIKEEEEKEGK 161
           V     V     E    + + KLE    +E  I++E  +E K
Sbjct: 443 VAKEAQVKVAEVEGEKVDNKAKLEATLQEEAAIQQEHLEELK 484

Crucial for the maintenance of mitochondrial tubular networks and for the assembly of the supercomplexes of the respiratory chain. Required for the maintenance of the tubular shape and cristae organization.

Mus musculus (taxid: 10090)

>sp|O95202|LETM1_HUMAN LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Homo sapiens GN=LETM1 PE=1 SV=1

 Score =  117 bits (294), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/164 (42%), Positives = 101/164 (61%), Gaps = 3/164 (1%)

Query: 1   PRLVNMCKYMGISPFGTDSYLRYMLRKRLQWIKNDDKLIQAEGVESLSEAELREDCRERG 60
           P+LV +CK + +   GT+++LR+ L  RL+ IK DDKLI  EGV+SL+  EL+  CR RG
Sbjct: 324 PQLVALCKLLELQSIGTNNFLRFQLTMRLRSIKADDKLIAEEGVDSLNVKELQAACRARG 383

Query: 61  MLGLLSVEE-MRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLRPEEAVQATLSSLPDE 119
           M  L   E+ +R QL+ WLDL L+  +P+SLLILSRA  +   L P + +++TL +LP+ 
Sbjct: 384 MRALGVTEDRLRGQLKQWLDLHLHQEIPTSLLILSRAMYLPDTLSPADQLKSTLQTLPEI 443

Query: 120 VVDTVGVTALPSEDSVSERRRKLEYLAMQEELIKEEEEKEGKEL 163
           V     V     E    + + KLE   +QEE   ++E +E KEL
Sbjct: 444 VAKEAQVKVAEVEGEQVDNKAKLEA-TLQEEAAIQQEHRE-KEL 485

Crucial for the maintenance of mitochondrial tubular networks and for the assembly of the supercomplexes of the respiratory chain. Required for the maintenance of the tubular shape and cristae organization.

Homo sapiens (taxid: 9606)

>sp|Q0VCA3|LETM1_BOVIN LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Bos taurus GN=LETM1 PE=2 SV=1

 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/164 (42%), Positives = 101/164 (61%), Gaps = 3/164 (1%)

Query: 1   PRLVNMCKYMGISPFGTDSYLRYMLRKRLQWIKNDDKLIQAEGVESLSEAELREDCRERG 60
           P+LV +CK + +   GT+++LR+ L  RL+ IK DDKLI  EGV+SL+  EL+  CR RG
Sbjct: 310 PQLVALCKLLELQSIGTNNFLRFQLTMRLRSIKADDKLIAEEGVDSLNVKELQAACRARG 369

Query: 61  MLGLLSVEE-MRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLRPEEAVQATLSSLPDE 119
           M  L   E+ +R QL+ WL+L L+  +P+SLLILSRA  +   L P + +++TL +LP+ 
Sbjct: 370 MRALGVTEDRLRGQLKQWLELHLHQEIPTSLLILSRAMYLPETLSPADQLKSTLQTLPEI 429

Query: 120 VVDTVGVTALPSEDSVSERRRKLEYLAMQEELIKEEEEKEGKEL 163
           V     V     E    + + KLE   +QEE   ++E +E KEL
Sbjct: 430 VAKEAQVKVAEVEGEQVDNKAKLEA-TLQEEAAIQQEHRE-KEL 471

Crucial for the maintenance of mitochondrial tubular networks and for the assembly of the supercomplexes of the respiratory chain. Required for the maintenance of the tubular shape and cristae organization.

Bos taurus (taxid: 9913)

>sp|Q1LY46|LETM1_DANRE LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Danio rerio GN=letm1 PE=3 SV=2

 Score =  114 bits (284), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 62/156 (39%), Positives = 96/156 (61%), Gaps = 1/156 (0%)

Query: 1   PRLVNMCKYMGISPFGTDSYLRYMLRKRLQWIKNDDKLIQAEGVESLSEAELREDCRERG 60
           P+LV +CK + +   GT+++LR+ L  +L+ I+ DDKLI  EGV+SL+  EL+  CR RG
Sbjct: 331 PQLVALCKLLELQSIGTNNFLRFQLIMKLRAIRADDKLIAEEGVDSLTANELQAACRVRG 390

Query: 61  MLGLLSVEE-MRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLRPEEAVQATLSSLPDE 119
           M  L   EE +R+QL+ WL+L LN  +P+SLL+LSRA  +   L P + ++ TL +LP+ 
Sbjct: 391 MRALGVTEERLREQLKQWLELHLNQHIPTSLLLLSRAMFLPDTLSPADQLKTTLQNLPEI 450

Query: 120 VVDTVGVTALPSEDSVSERRRKLEYLAMQEELIKEE 155
           +     V     + S  + + KLE    +E  I++E
Sbjct: 451 MAKEAQVKVAELDFSKVDNKTKLETTLQEEAAIRQE 486

Crucial for the maintenance of mitochondrial tubular networks and for the assembly of the supercomplexes of the respiratory chain.

Danio rerio (taxid: 7955)

>sp|Q0VA06|LETM1_XENTR LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Xenopus tropicalis GN=letm1 PE=2 SV=1

 Score =  102 bits (254), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/161 (40%), Positives = 99/161 (61%), Gaps = 2/161 (1%)

Query: 1   PRLVNMCKYMGISPFGTDSYLRYMLRKRLQWIKNDDKLIQAEGVESLSEAELREDCRERG 60
           P+LV +CK + +   GT+++LR+ L  +L+ IK DDKLI  EG++SL+  EL+  CR RG
Sbjct: 326 PQLVALCKLLELQSIGTNNFLRFQLTMKLRSIKADDKLIADEGLDSLTVTELQAACRARG 385

Query: 61  MLGLLSVEE-MRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLRPEEAVQATLSSLPDE 119
           M  L   E+ +++QL+ WL+L L+  +P+SLL+LSRA  +   L P + ++ TL +LP+ 
Sbjct: 386 MRALGVTEDRLKEQLKQWLELHLDQEIPTSLLLLSRALYLPDTLSPADQLKTTLQTLPES 445

Query: 120 VVDTVGVTALPSEDSVSERRRKLEYLAMQEELI-KEEEEKE 159
           V     V     E    + + KLE    +EE I KE +EKE
Sbjct: 446 VAKEAQVKVAAVECEKVDNKTKLEATLQEEEAIRKENQEKE 486

Crucial for the maintenance of mitochondrial tubular networks and for the assembly of the supercomplexes of the respiratory chain.

Xenopus tropicalis (taxid: 8364)

>sp|Q08179|MDM38_YEAST Mitochondrial distribution and morphology protein 38 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MDM38 PE=1 SV=1

 Score =  100 bits (248), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 52/117 (44%), Positives = 70/117 (59%), Gaps = 3/117 (2%)

Query: 1   PRLVNMCKYMGISPFGTDSYLRYMLRKRLQWIKNDDKLIQAEGVESLSEAELREDCRERG 60
           P+L  M K+M + PFG D+ LRY +R +L+ I NDDK I  EGVESLS+ EL + C  RG
Sbjct: 260 PQLAAMSKFMSLRPFGNDNMLRYQIRSKLKDIMNDDKTIDYEGVESLSQEELYQACVSRG 319

Query: 61  MLGL-LSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLRPEEAVQATLSSL 116
           M    +S E++   L+ WL+L L   +PS L++LS  FT  G   P+E      S L
Sbjct: 320 MKAYGVSKEDLVDNLKVWLELRLRQKIPSVLMVLSSTFTFGG--LPKENYSKAFSPL 374

Involved in mitochondrial potassium homeostasis through the mitochondrial K(+)/H(+) exchange regulation.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O13920|MDM28_SCHPO LETM1 domain-containing protein mdm28, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mdm28 PE=2 SV=3

 Score = 99.8 bits (247), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 57/144 (39%), Positives = 88/144 (61%), Gaps = 7/144 (4%)

Query: 2   RLVNMCKYMGISPFGTDSYLRYMLRKRLQWIKNDDKLIQAEGVESLSEAELREDCRERGM 61
           +LV MC+YM ++ FGTD  LRY +R R++ I+ DD+ I  EG+ SLS  EL   C  RG+
Sbjct: 289 QLVAMCRYMNLNAFGTDPLLRYNIRHRMRQIRRDDRAIYIEGINSLSIPELFNACNSRGI 348

Query: 62  LGL-LSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFTVS---GKLRPE-EAVQATLSSL 116
               LS  +++++L  WLD+ + H +PS +L+LS AF+     G      +A+Q TL+S+
Sbjct: 349 RTQGLSPAKLKEELSVWLDMRIKHGIPSVILMLSNAFSYGYNEGTYDSRWDALQDTLASI 408

Query: 117 PDEVVDTVGVTALPSEDSVSERRR 140
           PDE+     V  +P++  VS + R
Sbjct: 409 PDELYHET-VVDMPTKQ-VSNKER 430

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q5PQQ5|LETM2_RAT LETM1 domain-containing protein LETM2, mitochondrial OS=Rattus norvegicus GN=Letm2 PE=2 SV=1

 Score = 97.4 bits (241), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 50/98 (51%), Positives = 70/98 (71%), Gaps = 1/98 (1%)

Query: 1   PRLVNMCKYMGISPFGTDSYLRYMLRKRLQWIKNDDKLIQAEGVESLSEAELREDCRERG 60
           P+LV +CK + +  FGT++ LR+ L   L+ IK DD++I  EGV++LS +EL+  CR RG
Sbjct: 294 PQLVALCKLLELQAFGTNNLLRFQLLMTLRSIKADDEVIAKEGVKALSVSELQAACRARG 353

Query: 61  MLGL-LSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAF 97
           M  L L+ E++RQQL +WLDL L  +VP SLL+LSR F
Sbjct: 354 MRSLGLTEEQLRQQLTEWLDLHLKENVPPSLLLLSRTF 391

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
225434179	764	PREDICTED: LETM1 and EF-hand domain-cont	0.901	0.192	0.959	8e-78
224092862	750	predicted protein [Populus trichocarpa]	0.889	0.193	0.958	6e-75
296083396	432	unnamed protein product [Vitis vinifera]	0.907	0.342	0.898	1e-74
359495892	504	PREDICTED: LETM1 and EF-hand domain-cont	0.907	0.293	0.898	1e-74
356530007	755	PREDICTED: LETM1 and EF-hand domain-cont	0.907	0.196	0.905	7e-73
356566963	761	PREDICTED: LETM1 and EF-hand domain-cont	0.901	0.193	0.911	1e-72
255547432	758	leucine zipper-ef-hand containing transm	0.907	0.195	0.898	2e-72
224101261	687	predicted protein [Populus trichocarpa]	0.907	0.215	0.891	3e-72
224109172	658	predicted protein [Populus trichocarpa]	0.907	0.224	0.891	4e-72
356512586	736	PREDICTED: LETM1 and EF-hand domain-cont	0.907	0.201	0.898	2e-71

>gi|225434179|ref|XP_002275474.1| PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial [Vitis vinifera] gi|296084337|emb|CBI24725.3| unnamed protein product [Vitis vinifera]

 Score =  294 bits (753), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 141/147 (95%), Positives = 145/147 (98%)

Query: 1   PRLVNMCKYMGISPFGTDSYLRYMLRKRLQWIKNDDKLIQAEGVESLSEAELREDCRERG 60
           PRLVNMCKYMGISPFGTD+YLRYMLRKRLQWIKNDD+LIQAEGVESLSEAELREDCRERG
Sbjct: 389 PRLVNMCKYMGISPFGTDAYLRYMLRKRLQWIKNDDRLIQAEGVESLSEAELREDCRERG 448

Query: 61  MLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLRPEEAVQATLSSLPDEV 120
           MLGL SVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGK+RPEEAVQATLSSLPDEV
Sbjct: 449 MLGLRSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKVRPEEAVQATLSSLPDEV 508

Query: 121 VDTVGVTALPSEDSVSERRRKLEYLAM 147
           VDTVG+TALPSEDSVSERRRKLEYL M
Sbjct: 509 VDTVGITALPSEDSVSERRRKLEYLEM 535

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092862|ref|XP_002309727.1| predicted protein [Populus trichocarpa] gi|222852630|gb|EEE90177.1| predicted protein [Populus trichocarpa]

 Score =  285 bits (728), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 139/145 (95%), Positives = 143/145 (98%)

Query: 1   PRLVNMCKYMGISPFGTDSYLRYMLRKRLQWIKNDDKLIQAEGVESLSEAELREDCRERG 60
           PRLVNMCKYMGISPFGTD+YLRYMLRKRLQ IKNDD+LIQAEGVESLSEAELREDCRERG
Sbjct: 375 PRLVNMCKYMGISPFGTDAYLRYMLRKRLQRIKNDDRLIQAEGVESLSEAELREDCRERG 434

Query: 61  MLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLRPEEAVQATLSSLPDEV 120
           MLGLLSVEEMRQQL DWLDLSLNHSVPSSLLILSRAFTVSGKL+PEEAV+ATLSSLPDEV
Sbjct: 435 MLGLLSVEEMRQQLHDWLDLSLNHSVPSSLLILSRAFTVSGKLKPEEAVRATLSSLPDEV 494

Query: 121 VDTVGVTALPSEDSVSERRRKLEYL 145
           VDTVGVTALPSEDSVSERRRKLEYL
Sbjct: 495 VDTVGVTALPSEDSVSERRRKLEYL 519

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083396|emb|CBI23351.3| unnamed protein product [Vitis vinifera]

 Score =  284 bits (726), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 133/148 (89%), Positives = 144/148 (97%)

Query: 1   PRLVNMCKYMGISPFGTDSYLRYMLRKRLQWIKNDDKLIQAEGVESLSEAELREDCRERG 60
           PRLVNMCKYMGISP+GTD+YLRYMLRKRLQWIKNDD++IQAEGVESLSEAEL + CR+RG
Sbjct: 57  PRLVNMCKYMGISPYGTDAYLRYMLRKRLQWIKNDDRMIQAEGVESLSEAELHQACRDRG 116

Query: 61  MLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLRPEEAVQATLSSLPDEV 120
           +LGLLSVEEMRQQLRDWLDLSLNH+VPSSLLILSRAFTVSGK++PEEAVQATLSSLPDEV
Sbjct: 117 LLGLLSVEEMRQQLRDWLDLSLNHAVPSSLLILSRAFTVSGKVKPEEAVQATLSSLPDEV 176

Query: 121 VDTVGVTALPSEDSVSERRRKLEYLAMQ 148
           VDTVGVT LPSEDSVSERRRKLE+L MQ
Sbjct: 177 VDTVGVTTLPSEDSVSERRRKLEFLEMQ 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495892|ref|XP_003635110.1| PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial-like [Vitis vinifera]

 Score =  284 bits (726), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 133/148 (89%), Positives = 144/148 (97%)

Query: 1   PRLVNMCKYMGISPFGTDSYLRYMLRKRLQWIKNDDKLIQAEGVESLSEAELREDCRERG 60
           PRLVNMCKYMGISP+GTD+YLRYMLRKRLQWIKNDD++IQAEGVESLSEAEL + CR+RG
Sbjct: 129 PRLVNMCKYMGISPYGTDAYLRYMLRKRLQWIKNDDRMIQAEGVESLSEAELHQACRDRG 188

Query: 61  MLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLRPEEAVQATLSSLPDEV 120
           +LGLLSVEEMRQQLRDWLDLSLNH+VPSSLLILSRAFTVSGK++PEEAVQATLSSLPDEV
Sbjct: 189 LLGLLSVEEMRQQLRDWLDLSLNHAVPSSLLILSRAFTVSGKVKPEEAVQATLSSLPDEV 248

Query: 121 VDTVGVTALPSEDSVSERRRKLEYLAMQ 148
           VDTVGVT LPSEDSVSERRRKLE+L MQ
Sbjct: 249 VDTVGVTTLPSEDSVSERRRKLEFLEMQ 276

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530007|ref|XP_003533577.1| PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial-like [Glycine max]

 Score =  278 bits (710), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 134/148 (90%), Positives = 143/148 (96%)

Query: 1   PRLVNMCKYMGISPFGTDSYLRYMLRKRLQWIKNDDKLIQAEGVESLSEAELREDCRERG 60
           PRLVNMCKYMGISP+GTD+YLRYMLRKRLQ IKNDDKLIQ EGVESLSEAELR+ CR+RG
Sbjct: 386 PRLVNMCKYMGISPYGTDAYLRYMLRKRLQEIKNDDKLIQVEGVESLSEAELRQACRDRG 445

Query: 61  MLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLRPEEAVQATLSSLPDEV 120
           +LGLLSVEEM+QQLRDWLDLSLNHSVPSSLLILSRAF+VSGK+RPEEAVQATLSSLPDEV
Sbjct: 446 LLGLLSVEEMQQQLRDWLDLSLNHSVPSSLLILSRAFSVSGKVRPEEAVQATLSSLPDEV 505

Query: 121 VDTVGVTALPSEDSVSERRRKLEYLAMQ 148
           VDTVGVT LPSEDSVSER+RKLEYL MQ
Sbjct: 506 VDTVGVTTLPSEDSVSERKRKLEYLEMQ 533

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566963|ref|XP_003551694.1| PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial-like [Glycine max]

 Score =  277 bits (708), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 134/147 (91%), Positives = 142/147 (96%)

Query: 1   PRLVNMCKYMGISPFGTDSYLRYMLRKRLQWIKNDDKLIQAEGVESLSEAELREDCRERG 60
           PRLVNMCKYMGISP+GTD+YLRYMLRKRLQ IKNDDKLIQ EGVESLSEAELR+ CR+RG
Sbjct: 386 PRLVNMCKYMGISPYGTDAYLRYMLRKRLQEIKNDDKLIQVEGVESLSEAELRQACRDRG 445

Query: 61  MLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLRPEEAVQATLSSLPDEV 120
           +LGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAF+VSGK+RPEEAVQATLSSLPDEV
Sbjct: 446 LLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFSVSGKVRPEEAVQATLSSLPDEV 505

Query: 121 VDTVGVTALPSEDSVSERRRKLEYLAM 147
           VDTVGVT LPSEDSVSER+RKLEYL M
Sbjct: 506 VDTVGVTTLPSEDSVSERKRKLEYLEM 532

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547432|ref|XP_002514773.1| leucine zipper-ef-hand containing transmembrane protein, putative [Ricinus communis] gi|223545824|gb|EEF47327.1| leucine zipper-ef-hand containing transmembrane protein, putative [Ricinus communis]

 Score =  276 bits (707), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 133/148 (89%), Positives = 143/148 (96%)

Query: 1   PRLVNMCKYMGISPFGTDSYLRYMLRKRLQWIKNDDKLIQAEGVESLSEAELREDCRERG 60
           PRLVNMCKYMGISP+GTD+YLRYMLR+RLQ IKNDDK+IQAEGVESLSE ELR+ CRERG
Sbjct: 382 PRLVNMCKYMGISPYGTDAYLRYMLRRRLQEIKNDDKMIQAEGVESLSETELRQACRERG 441

Query: 61  MLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLRPEEAVQATLSSLPDEV 120
           +LGLLSVEEMR QLRDWLDLSLNHSVPSSLLILSRAF+VSGK++PEEAVQATLSSLPDEV
Sbjct: 442 LLGLLSVEEMRLQLRDWLDLSLNHSVPSSLLILSRAFSVSGKVKPEEAVQATLSSLPDEV 501

Query: 121 VDTVGVTALPSEDSVSERRRKLEYLAMQ 148
           VDTVGVTALPSEDSVSERRRKLE+L MQ
Sbjct: 502 VDTVGVTALPSEDSVSERRRKLEFLEMQ 529

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101261|ref|XP_002312206.1| predicted protein [Populus trichocarpa] gi|222852026|gb|EEE89573.1| predicted protein [Populus trichocarpa]

 Score =  275 bits (704), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 132/148 (89%), Positives = 143/148 (96%)

Query: 1   PRLVNMCKYMGISPFGTDSYLRYMLRKRLQWIKNDDKLIQAEGVESLSEAELREDCRERG 60
           PRLVNMCKYMGISP+GTD+YLRYMLR+RLQ IK+DDK+IQAEGVESLSEAELR+ CR+RG
Sbjct: 311 PRLVNMCKYMGISPYGTDAYLRYMLRRRLQEIKSDDKMIQAEGVESLSEAELRQACRDRG 370

Query: 61  MLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLRPEEAVQATLSSLPDEV 120
           +LGLLSVEEMRQQL DWLDLSLN SVPSSLLILSRAF++SGK+RPEEAVQATLSSLPDEV
Sbjct: 371 LLGLLSVEEMRQQLHDWLDLSLNRSVPSSLLILSRAFSISGKVRPEEAVQATLSSLPDEV 430

Query: 121 VDTVGVTALPSEDSVSERRRKLEYLAMQ 148
           VDTVGVTALPSEDSVSERRRKLEYL MQ
Sbjct: 431 VDTVGVTALPSEDSVSERRRKLEYLEMQ 458

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109172|ref|XP_002315110.1| predicted protein [Populus trichocarpa] gi|222864150|gb|EEF01281.1| predicted protein [Populus trichocarpa]

 Score =  275 bits (704), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 132/148 (89%), Positives = 144/148 (97%)

Query: 1   PRLVNMCKYMGISPFGTDSYLRYMLRKRLQWIKNDDKLIQAEGVESLSEAELREDCRERG 60
           PRLV+MCKYMGISP+GTD+YLRYMLR+RLQ IKNDDK+IQAEGVESLSEAELR+ CR+RG
Sbjct: 286 PRLVSMCKYMGISPYGTDAYLRYMLRRRLQEIKNDDKMIQAEGVESLSEAELRQACRDRG 345

Query: 61  MLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLRPEEAVQATLSSLPDEV 120
           +LGLLSV+EMRQQLRDWLDLSLNHSVPSSLLILSRAF+VSGK+RPEEAVQATLSSLPDEV
Sbjct: 346 LLGLLSVDEMRQQLRDWLDLSLNHSVPSSLLILSRAFSVSGKVRPEEAVQATLSSLPDEV 405

Query: 121 VDTVGVTALPSEDSVSERRRKLEYLAMQ 148
           VDTVGVTALPSED VSERRRKLE+L MQ
Sbjct: 406 VDTVGVTALPSEDLVSERRRKLEFLEMQ 433

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512586|ref|XP_003524999.1| PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial-like [Glycine max]

 Score =  273 bits (698), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 133/148 (89%), Positives = 142/148 (95%)

Query: 1   PRLVNMCKYMGISPFGTDSYLRYMLRKRLQWIKNDDKLIQAEGVESLSEAELREDCRERG 60
           PRLVNMCKYMGISPFGTD+YLRYMLRK L+ IK DDKLIQAEGV+SLSE ELREDCRERG
Sbjct: 359 PRLVNMCKYMGISPFGTDAYLRYMLRKHLRRIKEDDKLIQAEGVDSLSEDELREDCRERG 418

Query: 61  MLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLRPEEAVQATLSSLPDEV 120
           MLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSR+FTVSG+L+PEEAVQATLSSLPDEV
Sbjct: 419 MLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRSFTVSGRLKPEEAVQATLSSLPDEV 478

Query: 121 VDTVGVTALPSEDSVSERRRKLEYLAMQ 148
           VDT+ VT+LPSEDSVSERRRKLE+L MQ
Sbjct: 479 VDTIQVTSLPSEDSVSERRRKLEFLEMQ 506

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
TAIR|locus:2080502	760	LETM1 "leucine zipper-EF-hand-	0.907	0.194	0.858	2.9e-64
TAIR|locus:2034136	736	LETM2 "leucine zipper-EF-hand-	0.901	0.199	0.877	1.4e-62
UNIPROTKB|Q5ZK33	752	LETM1 "LETM1 and EF-hand domai	0.877	0.190	0.423	4.3e-25
RGD|1359678	739	Letm1 "leucine zipper-EF-hand	0.877	0.193	0.430	8.7e-25
MGI|MGI:1932557	738	Letm1 "leucine zipper-EF-hand	0.877	0.193	0.423	1.1e-24
UNIPROTKB|F1S9F3	721	LETM1 "Uncharacterized protein	0.877	0.198	0.423	2.2e-24
UNIPROTKB|K7GSE0	782	LETM1 "Uncharacterized protein	0.877	0.182	0.423	2.6e-24
UNIPROTKB|O95202	739	LETM1 "LETM1 and EF-hand domai	0.877	0.193	0.423	4.9e-24
UNIPROTKB|E2RHA5	741	LETM1 "Uncharacterized protein	0.877	0.192	0.416	6.3e-24
UNIPROTKB|F1N3R4	732	LETM1 "LETM1 and EF-hand domai	0.877	0.195	0.416	1.7e-23

TAIR|locus:2080502 LETM1 "leucine zipper-EF-hand-containing transmembrane protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 655 (235.6 bits), Expect = 2.9e-64, P = 2.9e-64
 Identities = 127/148 (85%), Positives = 143/148 (96%)

Query:     1 PRLVNMCKYMGISPFGTDSYLRYMLRKRLQWIKNDDKLIQAEGVESLSEAELREDCRERG 60
             PRLV+MCKYMGISP+GTD+YLRYMLRKRL+ IK DDKLI+AEGV+SLSEAELREDCRERG
Sbjct:   378 PRLVSMCKYMGISPYGTDAYLRYMLRKRLRSIKEDDKLIRAEGVDSLSEAELREDCRERG 437

Query:    61 MLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLRPEEAVQATLSSLPDEV 120
             MLGL+SVEEMRQQLRDW+DLSLNHSVPSSLLILSRAFTV+G+++ E+AV+ATLSSLPDEV
Sbjct:   438 MLGLVSVEEMRQQLRDWMDLSLNHSVPSSLLILSRAFTVAGRVKAEDAVRATLSSLPDEV 497

Query:   121 VDTVGVTALPSEDSVSERRRKLEYLAMQ 148
             VDTVG+T+LPSED VSERRRKLEYL MQ
Sbjct:   498 VDTVGITSLPSEDPVSERRRKLEYLEMQ 525

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

TAIR|locus:2034136 LETM2 "leucine zipper-EF-hand-containing transmembrane protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
 Identities = 129/147 (87%), Positives = 139/147 (94%)

Query:     2 RLVNMCKYMGISPFGTDSYLRYMLRKRLQWIKNDDKLIQAEGVESLSEAELREDCRERGM 61
             RLVNMCKYMGISPFGTD+YLRYMLRKRLQ IK DDKLI+AEGVESLSEAELR+ CRERGM
Sbjct:   358 RLVNMCKYMGISPFGTDAYLRYMLRKRLQEIKKDDKLIKAEGVESLSEAELRQACRERGM 417

Query:    62 LGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLRPEEAVQATLSSLPDEVV 121
             L L SVEEMR+QL DWLDLSLNHSVPSSLLILSR+F+++GKL+PEEAVQATLSSLPDEVV
Sbjct:   418 LQLGSVEEMREQLVDWLDLSLNHSVPSSLLILSRSFSMAGKLKPEEAVQATLSSLPDEVV 477

Query:   122 DTVGVTALPSEDSVSERRRKLEYLAMQ 148
             DTVGVTAL SEDSVSER+RKLEYL MQ
Sbjct:   478 DTVGVTALSSEDSVSERKRKLEYLEMQ 504

GO:0005509 "calcium ion binding" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5ZK33 LETM1 "LETM1 and EF-hand domain-containing protein 1, mitochondrial" [Gallus gallus (taxid:9031)]

 Score = 295 (108.9 bits), Expect = 4.3e-25, P = 4.3e-25
 Identities = 61/144 (42%), Positives = 90/144 (62%)

Query:     1 PRLVNMCKYMGISPFGTDSYLRYMLRKRLQWIKNDDKLIQAEGVESLSEAELREDCRERG 60
             P+LV +CK + +   GT+++LR+ L  RL+ IK DDK+I  EGV+SL+  EL+  CR RG
Sbjct:   321 PQLVALCKLLELQSIGTNNFLRFQLTMRLRTIKADDKMIAEEGVDSLTVKELQAACRARG 380

Query:    61 MLGL-LSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLRPEEAVQATLSSLPDE 119
             M  L ++ E +R+QL+ WLDL LN  +P+SLLILSRA  +   L P + ++ TL +LP+ 
Sbjct:   381 MRALGVTEERLREQLKQWLDLHLNQEIPTSLLILSRAMYLPDTLSPADQLKTTLQTLPES 440

Query:   120 VVDTVGVTALPSEDSVSERRRKLE 143
             V     V     E    + + +LE
Sbjct:   441 VAKEAQVKVAEVEGEKVDNKARLE 464

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0042407 "cristae formation" evidence=IEA

RGD|1359678 Letm1 "leucine zipper-EF-hand containing transmembrane protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 292 (107.8 bits), Expect = 8.7e-25, P = 8.7e-25
 Identities = 62/144 (43%), Positives = 91/144 (63%)

Query:     1 PRLVNMCKYMGISPFGTDSYLRYMLRKRLQWIKNDDKLIQAEGVESLSEAELREDCRERG 60
             P+LV +CK + +   GT+++LR+ L  RL+ IK DDKLI  EGV+SL+  EL+  CR RG
Sbjct:   323 PQLVALCKLLELQSIGTNNFLRFQLTMRLRSIKADDKLISEEGVDSLTVKELQAACRARG 382

Query:    61 MLGL-LSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLRPEEAVQATLSSLPDE 119
             M  L ++ + ++ QL+ WLDL L H +P+SLLILSRA  +   L P + +++TL +LP+ 
Sbjct:   383 MRALGVTEDRLKGQLKQWLDLHLYHEIPTSLLILSRAMYLPDTLSPADQLKSTLQTLPEI 442

Query:   120 VVDTVGVTALPSEDSVSERRRKLE 143
             V     V A   E    + + KLE
Sbjct:   443 VAKEAQVKAAEVEGEQVDNKAKLE 466

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0042407 "cristae formation" evidence=IEA;ISO

MGI|MGI:1932557 Letm1 "leucine zipper-EF-hand containing transmembrane protein 1" [Mus musculus (taxid:10090)]

 Score = 291 (107.5 bits), Expect = 1.1e-24, P = 1.1e-24
 Identities = 61/144 (42%), Positives = 91/144 (63%)

Query:     1 PRLVNMCKYMGISPFGTDSYLRYMLRKRLQWIKNDDKLIQAEGVESLSEAELREDCRERG 60
             P+LV +CK + +   GT+++LR+ L  RL+ IK DDKLI  EGV+SL+  EL+  CR RG
Sbjct:   323 PQLVALCKLLELQSIGTNNFLRFQLTMRLRSIKADDKLISEEGVDSLTVKELQAACRARG 382

Query:    61 MLGL-LSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLRPEEAVQATLSSLPDE 119
             M  L ++ + ++ QL+ WLDL L+H +P+SLLILSRA  +   L P + +++TL +LP+ 
Sbjct:   383 MRALGVTEDRLKGQLKQWLDLHLHHEIPTSLLILSRAMYLPDTLSPADQLKSTLQTLPEI 442

Query:   120 VVDTVGVTALPSEDSVSERRRKLE 143
             V     V     E    + + KLE
Sbjct:   443 VAKEAQVKVAEVEGEKVDNKAKLE 466

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=ISO;IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0042407 "cristae formation" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1S9F3 LETM1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 288 (106.4 bits), Expect = 2.2e-24, P = 2.2e-24
 Identities = 61/144 (42%), Positives = 91/144 (63%)

Query:     1 PRLVNMCKYMGISPFGTDSYLRYMLRKRLQWIKNDDKLIQAEGVESLSEAELREDCRERG 60
             P+LV +CK + +   GT+++LR+ L  RL+ IK DDKLI  EGV+SL+  EL+  CR RG
Sbjct:   305 PQLVALCKLLELQSIGTNNFLRFQLTMRLRSIKADDKLISEEGVDSLNVKELQAACRARG 364

Query:    61 MLGL-LSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLRPEEAVQATLSSLPDE 119
             M  L ++ + +R QL+ WL+L L+  +P+SLLILSRA  +   L P + +++TL +LP+ 
Sbjct:   365 MRALGVTEDRLRDQLKQWLELHLHQEIPTSLLILSRAMYLPDTLSPADQLKSTLQTLPEI 424

Query:   120 VVDTVGVTALPSEDSVSERRRKLE 143
             V     V A   E    + + KLE
Sbjct:   425 VAKEAQVKAAEVEGEQVDNKAKLE 448

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|K7GSE0 LETM1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 288 (106.4 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 61/144 (42%), Positives = 91/144 (63%)

Query:     1 PRLVNMCKYMGISPFGTDSYLRYMLRKRLQWIKNDDKLIQAEGVESLSEAELREDCRERG 60
             P+LV +CK + +   GT+++LR+ L  RL+ IK DDKLI  EGV+SL+  EL+  CR RG
Sbjct:   366 PQLVALCKLLELQSIGTNNFLRFQLTMRLRSIKADDKLISEEGVDSLNVKELQAACRARG 425

Query:    61 MLGL-LSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLRPEEAVQATLSSLPDE 119
             M  L ++ + +R QL+ WL+L L+  +P+SLLILSRA  +   L P + +++TL +LP+ 
Sbjct:   426 MRALGVTEDRLRDQLKQWLELHLHQEIPTSLLILSRAMYLPDTLSPADQLKSTLQTLPEI 485

Query:   120 VVDTVGVTALPSEDSVSERRRKLE 143
             V     V A   E    + + KLE
Sbjct:   486 VAKEAQVKAAEVEGEQVDNKAKLE 509

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|O95202 LETM1 "LETM1 and EF-hand domain-containing protein 1, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 285 (105.4 bits), Expect = 4.9e-24, P = 4.9e-24
 Identities = 61/144 (42%), Positives = 90/144 (62%)

Query:     1 PRLVNMCKYMGISPFGTDSYLRYMLRKRLQWIKNDDKLIQAEGVESLSEAELREDCRERG 60
             P+LV +CK + +   GT+++LR+ L  RL+ IK DDKLI  EGV+SL+  EL+  CR RG
Sbjct:   324 PQLVALCKLLELQSIGTNNFLRFQLTMRLRSIKADDKLIAEEGVDSLNVKELQAACRARG 383

Query:    61 MLGL-LSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLRPEEAVQATLSSLPDE 119
             M  L ++ + +R QL+ WLDL L+  +P+SLLILSRA  +   L P + +++TL +LP+ 
Sbjct:   384 MRALGVTEDRLRGQLKQWLDLHLHQEIPTSLLILSRAMYLPDTLSPADQLKSTLQTLPEI 443

Query:   120 VVDTVGVTALPSEDSVSERRRKLE 143
             V     V     E    + + KLE
Sbjct:   444 VAKEAQVKVAEVEGEQVDNKAKLE 467

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042407 "cristae formation" evidence=IMP

GO:0005739 "mitochondrion" evidence=ISS;IDA

UNIPROTKB|E2RHA5 LETM1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 284 (105.0 bits), Expect = 6.3e-24, P = 6.3e-24
 Identities = 60/144 (41%), Positives = 90/144 (62%)

Query:     1 PRLVNMCKYMGISPFGTDSYLRYMLRKRLQWIKNDDKLIQAEGVESLSEAELREDCRERG 60
             P+LV +CK + +   GT+++LR+ L  RL+ IK DDKLI  EGV+SL+  EL+  CR RG
Sbjct:   323 PQLVALCKLLELQSIGTNNFLRFQLTMRLRSIKADDKLIAEEGVDSLNVKELQSACRARG 382

Query:    61 MLGL-LSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLRPEEAVQATLSSLPDE 119
             M  L ++ + +R QL+ WL+L L+  +P+SLLILSRA  +   L P + +++TL +LP+ 
Sbjct:   383 MRALGVTEDRLRDQLKQWLELHLHQEIPTSLLILSRAMYLPDTLSPADQLKSTLQTLPEI 442

Query:   120 VVDTVGVTALPSEDSVSERRRKLE 143
             V     V     E    + + KLE
Sbjct:   443 VAKEAQVKVAEVEGEQVDNKAKLE 466

GO:0042407 "cristae formation" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|F1N3R4 LETM1 "LETM1 and EF-hand domain-containing protein 1, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 280 (103.6 bits), Expect = 1.7e-23, P = 1.7e-23
 Identities = 60/144 (41%), Positives = 90/144 (62%)

Query:     1 PRLVNMCKYMGISPFGTDSYLRYMLRKRLQWIKNDDKLIQAEGVESLSEAELREDCRERG 60
             P+LV +CK + +   GT+++LR+ L  RL+ IK DDKLI  EGV+SL+  EL+  CR RG
Sbjct:   310 PQLVALCKLLELQSIGTNNFLRFQLTMRLRSIKADDKLIAEEGVDSLNVKELQAACRARG 369

Query:    61 MLGL-LSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLRPEEAVQATLSSLPDE 119
             M  L ++ + +R QL+ WL+L L+  +P+SLLILSRA  +   L P + +++TL +LP+ 
Sbjct:   370 MRALGVTEDRLRGQLKQWLELHLHQEIPTSLLILSRAMYLPETLSPADQLKSTLQTLPEI 429

Query:   120 VVDTVGVTALPSEDSVSERRRKLE 143
             V     V     E    + + KLE
Sbjct:   430 VAKEAQVKVAEVEGEQVDNKAKLE 453

GO:0042407 "cristae formation" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	163
pfam07766	268	pfam07766, LETM1, LETM1-like protein	2e-38

>gnl|CDD|219562 pfam07766, LETM1, LETM1-like protein

 Score =  131 bits (331), Expect = 2e-38
 Identities = 55/95 (57%), Positives = 71/95 (74%), Gaps = 1/95 (1%)

Query: 1   PRLVNMCKYMGISPFGTDSYLRYMLRKRLQWIKNDDKLIQAEGVESLSEAELREDCRERG 60
           P+LV +CKY+ + PFGTD+ LR+ LR++L+ IK DD+ I  EGV SLS  EL+  CR RG
Sbjct: 174 PQLVALCKYLELHPFGTDNMLRFQLREKLRSIKADDRAIAREGVHSLSPEELQYACRARG 233

Query: 61  MLGL-LSVEEMRQQLRDWLDLSLNHSVPSSLLILS 94
           M  L LS E +R QL++WLDLSLN  VPS+LL+LS
Sbjct: 234 MRALGLSEERLRDQLQEWLDLSLNEKVPSTLLLLS 268

Members of this family are inner mitochondrial membrane proteins which play a role in potassium and hydrogen ion exchange. Deletion of LETM1 is thought to be involved in the development of Wolf-Hirschhorn syndrome in humans. Length = 268

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	163
KOG1043	499	consensus Ca2+-binding transmembrane protein LETM1	100.0
PF07766	268	LETM1: LETM1-like protein; InterPro: IPR011685 Thi	99.97
KOG4263	299	consensus Putative receptor CCR1 [Signal transduct	99.55
PF02037	35	SAP: SAP domain; InterPro: IPR003034 The SAP (afte	97.42
smart00513	35	SAP Putative DNA-binding (bihelical) motif predict	97.17
smart00513	35	SAP Putative DNA-binding (bihelical) motif predict	88.65
PF02037	35	SAP: SAP domain; InterPro: IPR003034 The SAP (afte	88.41
TIGR00578	584	ku70 ATP-dependent DNA helicase ii, 70 kDa subunit	83.47

>KOG1043 consensus Ca2+-binding transmembrane protein LETM1/MRS7 [Function unknown]

Probab=100.00  E-value=5.3e-39  Score=291.53  Aligned_cols=162  Identities=48%  Similarity=0.742  Sum_probs=153.3

Q ss_pred             ChHHHhHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-cCCCCHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHH
Q 038596            1 PRLVNMCKYMGISPFGTDSYLRYMLRKRLQWIKNDDKLIQAEG-VESLSEAELREDCRERGMLG-LLSVEEMRQQLRDWL   78 (163)
Q Consensus         1 pqLvalck~m~l~p~Gt~~~LR~rLr~rL~~L~~DD~~I~~EG-v~sLs~~EL~~AC~~RGi~~-~~s~e~Lr~~L~~WL   78 (163)
                      |||++||+||+++|||||+++||+||+++++|+.||+.|.+|| |++|+..||+.||++|||++ ++++++|+.||..|+
T Consensus       296 ~qL~al~k~m~l~~~Gt~~~lr~~lr~kik~ik~dD~~I~~eg~v~~ls~~el~~aC~~rgmra~gv~~e~l~~ql~~wl  375 (499)
T KOG1043|consen  296 PQLVALCKYMDLNSFGTDKLLRYQLRKKIKEIKKDDKHIATEGAVESLSLLELQIACRERGMRALGVSEERLREQLRVWL  375 (499)
T ss_pred             HHHHHHHHhhcccccCchHHHHHHHHHHHHHhcccccchhhhhhhhHhhHHHHHHHHHhhhcchhccchhhhhHHHHHHH
Confidence            7999999999999999999999999999999999999999999 99999999999999999998 589999999999999


Q ss_pred             hhhcCCCCChHHHHhHhhhccCCCCCcHHHHHHHHcc-CChHHhhhhhhcccCCCcchhHHhhhHHHHHHHHHHHHHHHH
Q 038596           79 DLSLNHSVPSSLLILSRAFTVSGKLRPEEAVQATLSS-LPDEVVDTVGVTALPSEDSVSERRRKLEYLAMQEELIKEEEE  157 (163)
Q Consensus        79 ~Lsl~~~ip~sLLllsra~~~~~~~~~~~~l~~~ls~-lPd~~~~e~~~~~~~~e~~~~~~k~kle~l~~qee~I~eE~~  157 (163)
                      ++|++++||++||+|||+|++.+.....+++.++++. +|+.+..-...++.+.+++.++++.|++.++++|+.|.+|.+
T Consensus       376 dlsl~~~vps~lL~Lsr~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~l~~~e~~~~~e~e  455 (499)
T KOG1043|consen  376 DLSLDKKVPSVLLLLSRTFSLGQNSKAPSSSSGKLQIAAPDDLEKLEKLKKEESELGAVDRKKKLELLREGEEIISEEEE  455 (499)
T ss_pred             hhhccccCchHHHHHhhhhhhhhcccCCchhhhHhhhhccccHHHhcccccccccccccchHHHHHhhhccccccchhhh
Confidence            9999999999999999999999888788888888885 999999888888888877788899999999999999999999


Q ss_pred             hhccc
Q 038596          158 KEGKE  162 (163)
Q Consensus       158 q~~~~  162 (163)
                      +++++
T Consensus       456 ee~~~  460 (499)
T KOG1043|consen  456 EEEKQ  460 (499)
T ss_pred             ccccc
Confidence            88875

>PF07766 LETM1: LETM1-like protein; InterPro: IPR011685 This is a group of mainly hypothetical eukaryotic proteins

Probab=99.97  E-value=3.9e-31  Score=224.22  Aligned_cols=94  Identities=54%  Similarity=0.950  Sum_probs=78.5

Q ss_pred             ChHHHhHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHHh
Q 038596            1 PRLVNMCKYMGISPFGTDSYLRYMLRKRLQWIKNDDKLIQAEGVESLSEAELREDCRERGMLG-LLSVEEMRQQLRDWLD   79 (163)
Q Consensus         1 pqLvalck~m~l~p~Gt~~~LR~rLr~rL~~L~~DD~~I~~EGv~sLs~~EL~~AC~~RGi~~-~~s~e~Lr~~L~~WL~   79 (163)
                      |||++|||+||++||||++++|+||++|+.+|+.||++|.+|||++||.+||+.||++|||++ ++|+++||.||++||+
T Consensus       174 ~~L~~L~r~~~l~~~~~~~~lr~rL~~~~~~l~~dD~~i~~eGv~~Ls~~EL~~Ac~~RGl~~~~~s~~~lr~~L~~WL~  253 (268)
T PF07766_consen  174 PHLRALCRLLGLTPFGPSSLLRRRLRKRLRYLKQDDRLIKREGVDSLSEEELQDACYERGLRSTGLSEEELREWLKQWLQ  253 (268)
T ss_dssp             HHHHHHHHHTT----SSHHHHHHHHHHHHHHHHHHHHHHHHH-GGGS-HHHHHHHHHHTT---TT--HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCcCCchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHH
Confidence            589999999999999999999999999999999999999999999999999999999999998 6999999999999999


Q ss_pred             hhcCCCCChHHHHhH
Q 038596           80 LSLNHSVPSSLLILS   94 (163)
Q Consensus        80 Lsl~~~ip~sLLlls   94 (163)
                      +|.+.++|+++|+||
T Consensus       254 ls~~~~~p~~lLlL~  268 (268)
T PF07766_consen  254 LSSNKKVPSSLLLLH  268 (268)
T ss_dssp             HHHTS---HHHHHHH
T ss_pred             HHccCCCCchhhccC
Confidence            999999999999997

Putative features found in LETM1, such as a transmembrane domain and a CK2 and PKC phosphorylation site [], are relatively conserved throughout the family. Deletion of LETM1 is thought to be involved in the development of Wolf-Hirschhorn syndrome in humans []. A member of this family, P91927 from SWISSPROT, is known to be expressed in the mitochondria of Drosophila melanogaster [], suggesting that this may be a group of mitochondrial proteins.; PDB: 3SKQ_A.

>KOG4263 consensus Putative receptor CCR1 [Signal transduction mechanisms]

Probab=99.55  E-value=2.1e-14  Score=122.35  Aligned_cols=88  Identities=25%  Similarity=0.426  Sum_probs=78.9

Q ss_pred             hCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHHhhhcCCCCCh
Q 038596           10 MGISPFGTDSYLRYMLRKRLQWIKNDDKLIQAEGVESLSEAELREDCRERGMLGL-LSVEEMRQQLRDWLDLSLNHSVPS   88 (163)
Q Consensus        10 m~l~p~Gt~~~LR~rLr~rL~~L~~DD~~I~~EGv~sLs~~EL~~AC~~RGi~~~-~s~e~Lr~~L~~WL~Lsl~~~ip~   88 (163)
                      |.++.|-++.++|.||..|+.-|+..|++|.++||++|+..||+.||+-||++++ +++++||+||++|+.+|..-+-|.
T Consensus       200 ~~l~~yp~p~~~rHRl~~h~~~ih~lD~al~~~gi~~lt~~~l~~~CYlRgln~~~~~~~~mr~wLr~wvkiS~Slk~~~  279 (299)
T KOG4263|consen  200 MLLTSYPPPPLLRHRLKTHTTVIHQLDKALAKLGIGQLTAQELKSACYLRGLNSTHIGEDRMRTWLREWVKISCSLKEAE  279 (299)
T ss_pred             hhhccCCCChHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHhhhccCCCCccChHHHHHHHHHHHhhhhcccccc
Confidence            5677888899999999999999999999999999999999999999999999986 999999999999999999877776


Q ss_pred             HHHHhHhhh
Q 038596           89 SLLILSRAF   97 (163)
Q Consensus        89 sLLllsra~   97 (163)
                      -.|+|....
T Consensus       280 ~slllh~pv  288 (299)
T KOG4263|consen  280 LSLLLHNPV  288 (299)
T ss_pred             hhhhhhhhH
Confidence            555554433

>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []

Probab=97.42  E-value=0.0003  Score=42.95  Aligned_cols=34  Identities=32%  Similarity=0.494  Sum_probs=31.0

Q ss_pred             CCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 038596           45 ESLSEAELREDCRERGMLGLLSVEEMRQQLRDWL   78 (163)
Q Consensus        45 ~sLs~~EL~~AC~~RGi~~~~s~e~Lr~~L~~WL   78 (163)
                      ++|++.||+..|..||+.+.++.++|.+.|.+|+
T Consensus         2 ~~l~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l   35 (35)
T PF02037_consen    2 SKLTVAELKEELKERGLSTSGKKAELIERLKEHL   35 (35)
T ss_dssp             TTSHHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred             CcCcHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence            5799999999999999999999999999999986

In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....

>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation

Probab=97.17  E-value=0.00087  Score=40.60  Aligned_cols=35  Identities=23%  Similarity=0.375  Sum_probs=31.8

Q ss_pred             cCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 038596           44 VESLSEAELREDCRERGMLGLLSVEEMRQQLRDWL   78 (163)
Q Consensus        44 v~sLs~~EL~~AC~~RGi~~~~s~e~Lr~~L~~WL   78 (163)
                      +.+|+..||+..|.++|+.+.++.++|.+.+.+|+
T Consensus         1 ~~~l~~~~Lk~~l~~~gl~~~G~K~~Lv~Rl~~~~   35 (35)
T smart00513        1 LAKLKVSELKDELKKRGLSTSGTKAELVDRLLEAL   35 (35)
T ss_pred             CCcCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHhC
Confidence            35799999999999999999888999999999885

>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation

Probab=88.65  E-value=0.51  Score=28.30  Aligned_cols=28  Identities=29%  Similarity=0.216  Sum_probs=24.6

Q ss_pred             ChHHHhHHHhCCCCCCCcHHHHHHHHHH
Q 038596            1 PRLVNMCKYMGISPFGTDSYLRYMLRKR   28 (163)
Q Consensus         1 pqLvalck~m~l~p~Gt~~~LR~rLr~r   28 (163)
                      ++|.+.|+-.|+++-|+..-|..||..+
T Consensus         7 ~~Lk~~l~~~gl~~~G~K~~Lv~Rl~~~   34 (35)
T smart00513        7 SELKDELKKRGLSTSGTKAELVDRLLEA   34 (35)
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHHHHh
Confidence            3799999999999999999888888765

>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []

Probab=88.41  E-value=0.66  Score=28.04  Aligned_cols=29  Identities=28%  Similarity=0.271  Sum_probs=24.3

Q ss_pred             ChHHHhHHHhCCCCCCCcHHHHHHHHHHH
Q 038596            1 PRLVNMCKYMGISPFGTDSYLRYMLRKRL   29 (163)
Q Consensus         1 pqLvalck~m~l~p~Gt~~~LR~rLr~rL   29 (163)
                      ++|..+|+-+|+++-|+..-|.-||..++
T Consensus         7 ~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l   35 (35)
T PF02037_consen    7 AELKEELKERGLSTSGKKAELIERLKEHL   35 (35)
T ss_dssp             HHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence            47999999999999999988888887653

In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....

>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70)

Probab=83.47  E-value=2.4  Score=40.19  Aligned_cols=37  Identities=19%  Similarity=0.310  Sum_probs=33.9

Q ss_pred             CcCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh
Q 038596           43 GVESLSEAELREDCRERGMLGLLSVEEMRQQLRDWLD   79 (163)
Q Consensus        43 Gv~sLs~~EL~~AC~~RGi~~~~s~e~Lr~~L~~WL~   79 (163)
                      ++.+||+.+|+..|...|+++....++|.+.+..|++
T Consensus       548 ~l~kltv~~Lk~~l~~~g~~~~~kKadLi~~i~~~~~  584 (584)
T TIGR00578       548 TLGKLTVSVLKDFCRAYGLRSGSKKQELLDALTKHFK  584 (584)
T ss_pred             ChhhccHHHHHHHHHHcCCCccccHHHHHHHHHHHhC
Confidence            4889999999999999999977789999999999984

Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	163
3skq_A	249	Mdm38 Is A 14-3-3-Like Receptor And Associates With		1e-21

>pdb|3SKQ|A Chain A, Mdm38 Is A 14-3-3-Like Receptor And Associates With The Protein Synthesis Machinery At The Inner Mitochondrial Membrane Length = 249

Iteration: 1
 Score = 99.0 bits (245), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 52/120 (43%), Positives = 72/120 (60%), Gaps = 3/120 (2%)
Query: 1   PRLVNMCKYMGISPFGTDSYLRYMLRKRLQWIKNDDKLIQAEGVESLSEAELREDCRERG 60
           P+L  M K+M + PFG D+ LRY +R +L+ I NDDK I  EGVESLS+ EL + C  RG
Sbjct: 101 PQLAAMSKFMSLRPFGNDNMLRYQIRSKLKDIMNDDKTIDYEGVESLSQEELYQACVSRG 160
Query: 61  MLGL-LSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLRPEEAVQATLSSLPDE 119
           M    +S E++   L+ WL+L L   +PS L++LS  FT  G   P+E      S L ++
Sbjct: 161 MKAYGVSKEDLVDNLKVWLELRLRQKIPSVLMVLSSTFTFGG--LPKENYSKAFSPLAEK 218

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	163
3skq_A	249	Mitochondrial distribution and morphology protein;	1e-41
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>3skq_A Mitochondrial distribution and morphology protein; 14-3-3-like membrane protein, mitochondrial ribosome, respir chain biogenesis; 2.10A {Saccharomyces cerevisiae} Length = 249

 Score =  138 bits (348), Expect = 1e-41
 Identities = 54/147 (36%), Positives = 75/147 (51%), Gaps = 27/147 (18%)

Query: 1   PRLVNMCKYMGISPFGTDSYLRYMLRKRLQWIKNDDKLIQAEGVESLSEAELREDCRERG 60
           P+L  M K+M + PFG D+ LRY +R +L+ I NDDK I  EGVESLS+ EL + C  RG
Sbjct: 101 PQLAAMSKFMSLRPFGNDNMLRYQIRSKLKDIMNDDKTIDYEGVESLSQEELYQACVSRG 160

Query: 61  MLGL-LSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLR--------------- 104
           M    +S E++   L+ WL+L L   +PS L++LS  FT  G  +               
Sbjct: 161 MKAYGVSKEDLVDNLKVWLELRLRQKIPSVLMVLSSTFTFGGLPKENYSKAFSPLAEKKE 220

Query: 105 -----------PEEAVQATLSSLPDEV 120
                        + +   LSS+PD V
Sbjct: 221 TKSKYDDLLDLYYDGILQVLSSIPDPV 247

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.3 bits (88), Expect = 6e-04
 Identities = 27/152 (17%), Positives = 45/152 (29%), Gaps = 50/152 (32%)

Query: 31  WIK----NDDKLIQAEGVESLSEAELREDC----RERGMLGL-LSVEEMRQQLRDWLDLS 81
           W+     N  + +    +E L +   + D     R      + L +  ++ +LR  L   
Sbjct: 186 WLNLKNCNSPETV----LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL--- 238

Query: 82  LNHSVPSSLLILS--------RAFTVSGKLRPEEAVQATLSSLPDEVVDT--VGVTALPS 131
            +    + LL+L          AF +S K          L       + T    VT    
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCK---------IL-------LTTRFKQVT---- 278

Query: 132 EDSVSERRRKLEYLAMQEELIKEEEEKEGKEL 163
            D +S        L   +         E K L
Sbjct: 279 -DFLSAATTTHISL---DHHSMTLTPDEVKSL 306

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	163
3skq_A	249	Mitochondrial distribution and morphology protein;	100.0
2do1_A	55	Nuclear protein HCC-1; SAP domain, structural geno	96.89
1jjr_A	151	KU70, thyroid autoantigen; DNA repair protein, pro	96.72
1zrj_A	50	E1B-55KDA-associated protein 5 isoform C; SAP doma	96.27
2rnn_A	114	E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA bind	96.27
1h1j_S	51	THO1 protein; SAP domain, DNA binding; NMR {Saccha	95.97
2kvu_A	75	MKL/myocardin-like protein 1; SAP motif, DNA/RNA b	95.91
1jjr_A	151	KU70, thyroid autoantigen; DNA repair protein, pro	94.05

>3skq_A Mitochondrial distribution and morphology protein; 14-3-3-like membrane protein, mitochondrial ribosome, respir chain biogenesis; 2.10A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.2e-49  Score=329.79  Aligned_cols=122  Identities=44%  Similarity=0.738  Sum_probs=117.5

Q ss_pred             ChHHHhHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHHh
Q 038596            1 PRLVNMCKYMGISPFGTDSYLRYMLRKRLQWIKNDDKLIQAEGVESLSEAELREDCRERGMLG-LLSVEEMRQQLRDWLD   79 (163)
Q Consensus         1 pqLvalck~m~l~p~Gt~~~LR~rLr~rL~~L~~DD~~I~~EGv~sLs~~EL~~AC~~RGi~~-~~s~e~Lr~~L~~WL~   79 (163)
                      |||++|||||||+||||++|||||||+|+++|++||++|.+|||++||.+||+.||++|||++ ++++++||.||++||+
T Consensus       101 ~qLvaLck~m~L~p~gt~~~LR~rLr~rl~~I~~DDr~I~~EGV~sLs~~ELr~AC~~RGm~~~gls~e~LR~~L~~WL~  180 (249)
T 3skq_A          101 PQLAAMSKFMSLRPFGNDNMLRYQIRSKLKDIMNDDKTIDYEGVESLSQEELYQACVSRGMKAYGVSKEDLVDNLKVWLE  180 (249)
T ss_dssp             HHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSCHHHHHHHHHHTTCCCTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHhCcccCCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence            799999999999999999999999999999999999999999999999999999999999998 5999999999999999


Q ss_pred             hhcCCCCChHHHHhHhhhccCCCC--------------------------CcHHHHHHHHccCChHHhh
Q 038596           80 LSLNHSVPSSLLILSRAFTVSGKL--------------------------RPEEAVQATLSSLPDEVVD  122 (163)
Q Consensus        80 Lsl~~~ip~sLLllsra~~~~~~~--------------------------~~~~~l~~~ls~lPd~~~~  122 (163)
                      ||++++||+|||||||||+|++..                          ++||||.+|||||||+|||
T Consensus       181 Lsl~~~vPssLLilSra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~vls~ipd~vyn  249 (249)
T 3skq_A          181 LRLRQKIPSVLMVLSSTFTFGGLPKENYSKAFSPLAEKKETKSKYDDLLDLYYDGILQVLSSIPDPVYN  249 (249)
T ss_dssp             HHHTSCCCHHHHHHHHGGGSSSCCCCCCEEEECHHHHTSSSCCHHHHHHHHHHHHHHHHHHHSCCTTTC
T ss_pred             HHccCCCCHHHHHHHHHHHccCcchhhhhhhccchhhhhhccchhhhhHHHHHHHHHHHHccCCccccC
Confidence            999999999999999999998752                          3579999999999999996

>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1

Probab=96.89  E-value=0.0021  Score=42.44  Aligned_cols=44  Identities=27%  Similarity=0.452  Sum_probs=38.0

Q ss_pred             cCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhhcCCCCCh
Q 038596           44 VESLSEAELREDCRERGMLGLLSVEEMRQQLRDWLDLSLNHSVPS   88 (163)
Q Consensus        44 v~sLs~~EL~~AC~~RGi~~~~s~e~Lr~~L~~WL~Lsl~~~ip~   88 (163)
                      +..|++.||+..|..||+.+.....+|.+.|..++.=. .+.+|+
T Consensus        10 l~klkV~eLK~~L~~rGL~~~G~KaeLieRL~~~l~~~-~~~~~~   53 (55)
T 2do1_A           10 LHKLKLAELKQECLARGLETKGIKQDLIHRLQAYLEEH-AESGPS   53 (55)
T ss_dssp             TTTSCHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHT-CCSCCC
T ss_pred             HHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcC-cccccC
Confidence            56899999999999999998888999999999999876 344554

>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1

Probab=96.27  E-value=0.0062  Score=39.39  Aligned_cols=36  Identities=31%  Similarity=0.355  Sum_probs=33.0

Q ss_pred             cCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh
Q 038596           44 VESLSEAELREDCRERGMLGLLSVEEMRQQLRDWLD   79 (163)
Q Consensus        44 v~sLs~~EL~~AC~~RGi~~~~s~e~Lr~~L~~WL~   79 (163)
                      +..|++.||+..|..||+.+....++|.+.|..|+.
T Consensus        10 ~~klkV~eLK~eLk~RgL~~~G~Ka~Li~RL~~~~~   45 (50)
T 1zrj_A           10 VRRLKVNELREELQRRGLDTRGLKAELAERLQAALS   45 (50)
T ss_dssp             GGGSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHC
T ss_pred             HHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHh
Confidence            458999999999999999998889999999999875

>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}

Probab=96.27  E-value=0.024  Score=42.48  Aligned_cols=71  Identities=18%  Similarity=0.175  Sum_probs=49.9

Q ss_pred             CcCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhhcCC--CCChHHHHhHhhhc----cCCCCCcHHHHHHHHc
Q 038596           43 GVESLSEAELREDCRERGMLGLLSVEEMRQQLRDWLDLSLNH--SVPSSLLILSRAFT----VSGKLRPEEAVQATLS  114 (163)
Q Consensus        43 Gv~sLs~~EL~~AC~~RGi~~~~s~e~Lr~~L~~WL~Lsl~~--~ip~sLLllsra~~----~~~~~~~~~~l~~~ls  114 (163)
                      .+..|++.||+..|+++|+.+.+..++|-+.+.+||.-....  .=|.-+.- .+++-    .+...+.++.|-.+|.
T Consensus        36 ~l~kLtVaELK~~cr~~GL~~sGkKaeLi~RI~~yl~~~~~~g~~D~~rl~a-i~~lI~~~~~g~plP~~~~l~~alr  112 (114)
T 2rnn_A           36 LMELLKVSELKDICRSVSFPVSGRKAVLQDLIRNFLQNALVVGKSDPYRVQA-VKFLIERIRKNEPLPVYKDLWNALR  112 (114)
T ss_dssp             HHTTCCHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHTTCTTCCCHHHHHH-HHHHHHHHHHTCCCCCHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHcCCCcCCcHHHHHHHHHHHHHhccccCCCCHHHHHH-HHHHHHHHhcCCCCCCHHHHHHHHh
Confidence            477999999999999999998889999999999999977653  33333322 22221    1344555666655543

>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A

Probab=95.97  E-value=0.012  Score=38.11  Aligned_cols=38  Identities=21%  Similarity=0.055  Sum_probs=33.7

Q ss_pred             cCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhh
Q 038596           44 VESLSEAELREDCRERGMLGLLSVEEMRQQLRDWLDLS   81 (163)
Q Consensus        44 v~sLs~~EL~~AC~~RGi~~~~s~e~Lr~~L~~WL~Ls   81 (163)
                      +.+|++.||+..|..||+.+.+..++|.+.|..+..=+
T Consensus         5 ~~kltV~eLK~~Lk~RGL~~~G~KadLieRL~~~~~~~   42 (51)
T 1h1j_S            5 YSSLTVVQLKDLLTKRNLSVGGLKNELVQRLIKDDEES   42 (51)
T ss_dssp             GGGCCHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHS
T ss_pred             HHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHhc
Confidence            46899999999999999999888999999999987643

>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A

Probab=95.91  E-value=0.015  Score=40.73  Aligned_cols=39  Identities=21%  Similarity=0.295  Sum_probs=35.3

Q ss_pred             cCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhhc
Q 038596           44 VESLSEAELREDCRERGMLGLLSVEEMRQQLRDWLDLSL   82 (163)
Q Consensus        44 v~sLs~~EL~~AC~~RGi~~~~s~e~Lr~~L~~WL~Lsl   82 (163)
                      +.+|++.||+..|..||+.+.....+|.+.|..|++-..
T Consensus        26 l~klkVaeLK~eLk~RGL~~sG~KaeLIeRL~~~~~~~~   64 (75)
T 2kvu_A           26 LDDMKVAELKQELKLRSLPVSGTKTELIERLRAYQDQIS   64 (75)
T ss_dssp             TTTSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHHTTS
T ss_pred             HHHCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHccC
Confidence            568999999999999999998889999999999987643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	163
d1jeqa1	51	DNA binding C-terminal domain of ku70 {Human (Homo	97.24
d1h1js_	44	S/mar DNA-binding protein Tho1 {Baker's yeast (Sac	96.5
d1zrja1	37	Heterogeneous nuclear ribonucleoprotein U-like pro	96.11
d2do1a1	42	Nuclear protein hcc-1 {Human (Homo sapiens) [TaxId	93.97

>d1jeqa1 a.140.2.1 (A:559-609) DNA binding C-terminal domain of ku70 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: LEM/SAP HeH motif
superfamily: SAP domain
family: SAP domain
domain: DNA binding C-terminal domain of ku70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.0003  Score=44.26  Aligned_cols=42  Identities=21%  Similarity=0.358  Sum_probs=37.3

Q ss_pred             HHHHhCcCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh
Q 038596           38 LIQAEGVESLSEAELREDCRERGMLGLLSVEEMRQQLRDWLD   79 (163)
Q Consensus        38 ~I~~EGv~sLs~~EL~~AC~~RGi~~~~s~e~Lr~~L~~WL~   79 (163)
                      .+.+..+..|++.+|+..|+.||+++.+..++|.+.+..|++
T Consensus         9 ~~~~~~L~kltV~~LK~~lk~~gL~~sGkKa~Li~Ri~~~l~   50 (51)
T d1jeqa1           9 HISKGTLGKFTVPMLKEACRAYGLKSGLKKQELLEALTKHFQ   50 (51)
T ss_dssp             HHHHTCGGGCCHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHT
T ss_pred             HhccCcHhhCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhh
Confidence            344556899999999999999999998899999999999985

>d1h1js_ a.140.2.1 (S:) S/mar DNA-binding protein Tho1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: LEM/SAP HeH motif
superfamily: SAP domain
family: SAP domain
domain: S/mar DNA-binding protein Tho1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.50  E-value=0.0019  Score=39.33  Aligned_cols=36  Identities=19%  Similarity=0.064  Sum_probs=32.1

Q ss_pred             cCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh
Q 038596           44 VESLSEAELREDCRERGMLGLLSVEEMRQQLRDWLD   79 (163)
Q Consensus        44 v~sLs~~EL~~AC~~RGi~~~~s~e~Lr~~L~~WL~   79 (163)
                      ..+|++.||+..|..||+++....++|...|..+-.
T Consensus         5 y~~ltv~eLK~~lk~rgL~~sG~Ka~Li~RL~~~d~   40 (44)
T d1h1js_           5 YSSLTVVQLKDLLTKRNLSVGGLKNELVQRLIKDDE   40 (44)
T ss_dssp             GGGCCHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHH
T ss_pred             HHHCcHHHHHHHHHHCCCCCCCCHHHHHHHHHHHhh
Confidence            458999999999999999998889999999988743

>d1zrja1 a.140.2.1 (A:1-37) Heterogeneous nuclear ribonucleoprotein U-like protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: LEM/SAP HeH motif
superfamily: SAP domain
family: SAP domain
domain: Heterogeneous nuclear ribonucleoprotein U-like protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.0049  Score=36.19  Aligned_cols=34  Identities=29%  Similarity=0.332  Sum_probs=29.8

Q ss_pred             cCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 038596           44 VESLSEAELREDCRERGMLGLLSVEEMRQQLRDW   77 (163)
Q Consensus        44 v~sLs~~EL~~AC~~RGi~~~~s~e~Lr~~L~~W   77 (163)
                      +++|++.||+..|..||+.+.+..++|.+.|..-
T Consensus         3 ~~~m~V~eLK~~Lk~rgL~~sG~Ka~Li~RL~~a   36 (37)
T d1zrja1           3 VRRLKVNELREELQRRGLDTRGLKAELAERLQAA   36 (37)
T ss_dssp             GGGSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHH
T ss_pred             hHHCcHHHHHHHHHHCCCCCCCCHHHHHHHHHHh
Confidence            4589999999999999999988888988888753

>d2do1a1 a.140.2.1 (A:5-46) Nuclear protein hcc-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: LEM/SAP HeH motif
superfamily: SAP domain
family: SAP domain
domain: Nuclear protein hcc-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.97  E-value=0.068  Score=31.58  Aligned_cols=37  Identities=24%  Similarity=0.442  Sum_probs=33.0

Q ss_pred             CCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhh
Q 038596           45 ESLSEAELREDCRERGMLGLLSVEEMRQQLRDWLDLS   81 (163)
Q Consensus        45 ~sLs~~EL~~AC~~RGi~~~~s~e~Lr~~L~~WL~Ls   81 (163)
                      ..|...||++-|..||+.+-....+|...|+.+|+=|
T Consensus         4 ~klklaelkqec~argl~~kgnk~dli~rlqayleeh   40 (42)
T d2do1a1           4 HKLKLAELKQECLARGLETKGIKQDLIHRLQAYLEEH   40 (42)
T ss_dssp             TTSCHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHT
T ss_pred             hHhHHHHHHHHHHHccccccCcHHHHHHHHHHHHHHh
Confidence            4688899999999999999888899999999988754