Citrus Sinensis ID: 038604

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-----
Protein Sequence
MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKSGTVPTSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEELFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTASGGAAEFKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPGIIAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPISKEP
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccccEEEEEEccccccccccEEEEEEEEEEEEccccccccEEEEccccccccccccccEEEEEEEccccccEEEcccEEEEEEccHHHHccccEEEEEcccccEEEEccccccccccEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccEEEEcccccccccccccccccccccccccccccccEEEEEcccccEEEEccccccccccccEEEEccccccccccEEEEEEEEEEEEEccccccccEEEEccccccccccccccEEEEEEEcccccEEEccccEEEEEEEEHHHHHcccEEEEEcccccEEEEEccccccccEEEEEccccccccccc
Coil and Loop (DISEMBL)
MGFDYYNILKVNRNANEDDLKKAYKRLAMIwhpdknpshkrTEAEAKFKQISEAydvlsdpqkrqIYDLygeeglksgtvptsststsasragqhyyhqrqhpnpsfrfnprdaEDIYEELfgsesnnnsggqrgnnhnirgyshreglfrngncsstasggaaefkkapavenllpCSLEEIYKGAKKKMRISRnvydsvgktrtvEEILTVeikpgwkkgtkitfpekgnqepgiiaADLIFIvdekphalyrrdgndlvVGQEITLLEAltgktldlttldgrnlmipltdivkpgteivvpnegmpiskep
Flexible Loop (DISEMBL)
MGFDYYNIlkvnrnaneDDLKKAYKRLAMIwhpdknpshkrTEAEAKFKQISeaydvlsdpqkRQIYDLYGeeglksgtvptsststSASRAGQHyyhqrqhpnpsfrFNPRDAEDIYEELFGsesnnnsggqrgNNHNIRGYSHREGLFRNGNCSSTASGGAAEFKKAPAVENLLPCSLEEIYKgakkkmrisrnvydsvgktrtveeiltveikpgwkkgtkitfpekgnqepGIIAADLIFIVDEKPHALYRRDGNDLVVGQEITLLealtgktldlttldgrnlmipltdivkpgteivvpnegmpiskep
Low Complexity Region (SEG)
MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKsgtvptsststsasRAGQHYYHQRQHPNPSFRFNPRDAEDIYEELFgsesnnnsggqrgnnhnIRGYSHREGLFRNGNCSSTASGGAAEFKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPGIIAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEAltgktldlttldgRNLMIPLTDIVKPGTEIVVPNEGMPISKEP
Disordered region (IsUnstruct)
**FDYYNILKVNRNANEDDLKKAYKRLAMIWH*********************************IYDLY****************************************************************************************************AVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPGIIAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVV***********
Disordered Region (DISOPRED)
MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEG*****************************************************************************************************LPCSLEEI**************************ILTVEIKPGWKKGTKITFPEK*****GIIAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPI****
Disordered Region (DISEMBL)
MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDK**********AKFKQISEAYDVLSDPQKRQIYDLYGEEGLK************************QHPNPSFRFNPRDAEDIYEELFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTASGGAAEFKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPGIIAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPISKEP
Disordered Region (DISPRO)
**FDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKSGTVPTSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEELFGSESNNNSGGQRGNNHNIRGY*****LFRNGNCSSTASGGAAEFKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPGIIAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMP*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKSGTVPTSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEELFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTASGGAAEFKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPGIIAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPISKEP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	315	2.2.26 [Sep-21-2011]
Q9D832	337	DnaJ homolog subfamily B	yes	no	0.958	0.896	0.413	6e-59
Q3MI00	340	DnaJ homolog subfamily B	yes	no	0.949	0.879	0.401	1e-58
Q9UDY4	337	DnaJ homolog subfamily B	yes	no	0.958	0.896	0.406	8e-58
Q5R8J8	337	DnaJ homolog subfamily B	yes	no	0.958	0.896	0.403	2e-57
P25685	340	DnaJ homolog subfamily B	no	no	0.965	0.894	0.410	5e-57
Q9QYJ3	340	DnaJ homolog subfamily B	no	no	0.965	0.894	0.413	2e-56
Q2KIT4	337	DnaJ homolog subfamily B	no	no	0.958	0.896	0.394	2e-56
O89114	348	DnaJ homolog subfamily B	no	no	0.968	0.876	0.406	3e-55
Q5BIP8	348	DnaJ homolog subfamily B	no	no	0.968	0.876	0.406	1e-54
O75953	348	DnaJ homolog subfamily B	no	no	0.968	0.876	0.4	2e-54

>sp|Q9D832|DNJB4_MOUSE DnaJ homolog subfamily B member 4 OS=Mus musculus GN=Dnajb4 PE=2 SV=1

 Score =  228 bits (580), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 131/317 (41%), Positives = 194/317 (61%), Gaps = 15/317 (4%)

Query: 1   MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSD 60
           MG DYY+IL +++ A ++D+KKAY++ A+ +HPDKN   K  +AE KFK+++EAY+VLSD
Sbjct: 1   MGKDYYHILGIDKGATDEDVKKAYRKQALKFHPDKN---KSPQAEEKFKEVAEAYEVLSD 57

Query: 61  PQKRQIYDLYGEEGLKSGTVPTSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEE 120
           P+KR+IYD +GEEGLK G   T     +     ++ +H   H   +  F      + +E 
Sbjct: 58  PKKREIYDQFGEEGLKGGAGGTDGQGGTF----RYTFHGDPHATFAAFFG---GSNPFEI 110

Query: 121 LFGSESNNNSGGQRGNNHNIRGYSHRE-GLFRNGNCSSTASGGAAEFKKAPAVENLLPCS 179
            FG       GG+      I G      G   NG      S G +  K+ P + + L  S
Sbjct: 111 FFG---RRMGGGRDSEEMEIDGDPFSAFGFSMNGYPRDRNSVGPSRLKQDPPIIHELKVS 167

Query: 180 LEEIYKGAKKKMRISRNVYDSVGKT-RTVEEILTVEIKPGWKKGTKITFPEKGNQEPGII 238
           LEEIY G  K+M+ISR   +  G++ R+ ++ILT+EIK GWK+GTKITFP +G++ P  I
Sbjct: 168 LEEIYSGCTKRMKISRKRLNPDGRSYRSEDKILTIEIKKGWKEGTKITFPREGDETPNSI 227

Query: 239 AADLIFIVDEKPHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKP 298
            AD++F++ +K H  ++RDG+++V   +I+L EAL G +L++ T+DGRNL + +TDIVKP
Sbjct: 228 PADIVFVIKDKEHPKFKRDGSNIVYTAKISLREALCGCSLNVPTMDGRNLPMSVTDIVKP 287

Query: 299 GTEIVVPNEGMPISKEP 315
           G    V   G+P  K P
Sbjct: 288 GMRRRVIGYGLPFPKNP 304

Probable chaperone.
Mus musculus (taxid: 10090)

>sp|Q3MI00|DNJB1_BOVIN DnaJ homolog subfamily B member 1 OS=Bos taurus GN=DNAJB1 PE=2 SV=3

 Score =  226 bits (577), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 130/324 (40%), Positives = 191/324 (58%), Gaps = 25/324 (7%)

Query: 1   MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSD 60
           MG DYY  L + R A+++++K+AY+R A+ +HPDKN   K   AE KFK+I+EAYDVLSD
Sbjct: 1   MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKN---KEPGAEEKFKEIAEAYDVLSD 57

Query: 61  PQKRQIYDLYGEEGLKSGTVPTSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEE 120
           P+KR+I+D YGEEGLK       S+  +   +  + +H   H              ++ E
Sbjct: 58  PRKREIFDRYGEEGLKGSGPSGGSSGGTNGTSFSYTFHGDPHA-------------MFAE 104

Query: 121 LFGSESN-NNSGGQRGNNHNI------RGYSHREGLFRNGNCSSTASGGAAEFKKA-PAV 172
            FG  +  +N  GQR     +       G+    G F N N   +        KK  P V
Sbjct: 105 FFGGRNPFDNFFGQRNGEEGMDIDDPFSGFPMGMGGFTNMNFGRSRPAQEPTRKKQDPPV 164

Query: 173 ENLLPCSLEEIYKGAKKKMRISRNVYDSVGKT-RTVEEILTVEIKPGWKKGTKITFPEKG 231
            + L  SLEEIY G  KKM+IS    +  GK+ R  ++ILT+E+K GWK+GTKITFP++G
Sbjct: 165 THDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKRGWKEGTKITFPKEG 224

Query: 232 NQEPGIIAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLMIP 291
           +Q    I AD++F++ +KPH +++RDG+D++    I+L EAL G T+++ TLDGR + + 
Sbjct: 225 DQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVV 284

Query: 292 LTDIVKPGTEIVVPNEGMPISKEP 315
             D+++PG    VP EG+P+ K P
Sbjct: 285 FKDVIRPGMRRKVPGEGLPLPKTP 308

Interacts with HSP70 and can stimulate its ATPase activity. Stimulates the association between HSC70 and HIP.

Bos taurus (taxid: 9913)

>sp|Q9UDY4|DNJB4_HUMAN DnaJ homolog subfamily B member 4 OS=Homo sapiens GN=DNAJB4 PE=1 SV=1

 Score =  224 bits (570), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 129/317 (40%), Positives = 193/317 (60%), Gaps = 15/317 (4%)

Query: 1   MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSD 60
           MG DYY IL + + A+++D+KKAY++ A+ +HPDKN   K  +AE KFK+++EAY+VLSD
Sbjct: 1   MGKDYYCILGIEKGASDEDIKKAYRKQALKFHPDKN---KSPQAEEKFKEVAEAYEVLSD 57

Query: 61  PQKRQIYDLYGEEGLKSGTVPTSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEE 120
           P+KR+IYD +GEEGLK G   T     +     ++ +H   H   +  F      + +E 
Sbjct: 58  PKKREIYDQFGEEGLKGGAGGTDGQGGTF----RYTFHGDPHATFAAFFG---GSNPFEI 110

Query: 121 LFGSESNNNSGGQRGNNHNIRGYSHRE-GLFRNGNCSSTASGGAAEFKKAPAVENLLPCS 179
            FG       GG+      I G      G   NG      S G +  K+ P V + L  S
Sbjct: 111 FFG---RRMGGGRDSEEMEIDGDPFSAFGFSMNGYPRDRNSVGPSRLKQDPPVIHELRVS 167

Query: 180 LEEIYKGAKKKMRISRNVYDSVGKT-RTVEEILTVEIKPGWKKGTKITFPEKGNQEPGII 238
           LEEIY G  K+M+ISR   ++ G++ R+ ++ILT+EIK GWK+GTKITFP +G++ P  I
Sbjct: 168 LEEIYSGCTKRMKISRKRLNADGRSYRSEDKILTIEIKKGWKEGTKITFPREGDETPNSI 227

Query: 239 AADLIFIVDEKPHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKP 298
            AD++FI+ +K H  ++RDG++++   +I+L EAL G ++++ TLDGRN+ + + DIVKP
Sbjct: 228 PADIVFIIKDKDHPKFKRDGSNIIYTAKISLREALCGCSINVPTLDGRNIPMSVNDIVKP 287

Query: 299 GTEIVVPNEGMPISKEP 315
           G    +   G+P  K P
Sbjct: 288 GMRRRIIGYGLPFPKNP 304

Probable chaperone.

Homo sapiens (taxid: 9606)

>sp|Q5R8J8|DNJB4_PONAB DnaJ homolog subfamily B member 4 OS=Pongo abelii GN=DNAJB4 PE=2 SV=1

 Score =  223 bits (568), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 128/317 (40%), Positives = 193/317 (60%), Gaps = 15/317 (4%)

Query: 1   MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSD 60
           MG DYY IL + + A+++D+KKAY++ A+ +HPDKN   K  +AE KFK+++EAY+VLSD
Sbjct: 1   MGKDYYCILGIEKGASDEDIKKAYRKQALKFHPDKN---KSPQAEEKFKEVAEAYEVLSD 57

Query: 61  PQKRQIYDLYGEEGLKSGTVPTSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEE 120
           P+KR+IYD +GEEGLK G   T     +     ++ +H   H   +  F      + +E 
Sbjct: 58  PKKREIYDQFGEEGLKGGAGGTDGQGGTF----RYTFHGDPHATFAAFFG---GSNPFEI 110

Query: 121 LFGSESNNNSGGQRGNNHNIRGYSHRE-GLFRNGNCSSTASGGAAEFKKAPAVENLLPCS 179
            FG       GG+      + G      G   NG      S G +  K+ P V + L  S
Sbjct: 111 FFG---RRMGGGRDSEEMEMDGDPFSAFGFSMNGYPRDRNSVGPSRLKQDPPVIHELRVS 167

Query: 180 LEEIYKGAKKKMRISRNVYDSVGKT-RTVEEILTVEIKPGWKKGTKITFPEKGNQEPGII 238
           LEEIY G  K+M+ISR   ++ G++ R+ ++ILT+EIK GWK+GTKITFP +G++ P  I
Sbjct: 168 LEEIYSGCTKRMKISRKRLNADGRSYRSEDKILTIEIKKGWKEGTKITFPREGDETPNSI 227

Query: 239 AADLIFIVDEKPHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKP 298
            AD++FI+ +K H  ++RDG++++   +I+L EAL G ++++ TLDGRN+ + + DIVKP
Sbjct: 228 PADIVFIIKDKDHPKFKRDGSNIIYTAKISLREALCGCSINVPTLDGRNIPMSVNDIVKP 287

Query: 299 GTEIVVPNEGMPISKEP 315
           G    +   G+P  K P
Sbjct: 288 GMRRRIIGYGLPFPKNP 304

Probable chaperone.

Pongo abelii (taxid: 9601)

>sp|P25685|DNJB1_HUMAN DnaJ homolog subfamily B member 1 OS=Homo sapiens GN=DNAJB1 PE=1 SV=4

 Score =  221 bits (563), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 131/319 (41%), Positives = 194/319 (60%), Gaps = 15/319 (4%)

Query: 1   MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSD 60
           MG DYY  L + R A+++++K+AY+R A+ +HPDKN   K   AE KFK+I+EAYDVLSD
Sbjct: 1   MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKN---KEPGAEEKFKEIAEAYDVLSD 57

Query: 61  PQKRQIYDLYGEEGLKSGTVPTSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEE 120
           P+KR+I+D YGEEGLK       S   +   +  + +H   H   +  F  R+  D +  
Sbjct: 58  PRKREIFDRYGEEGLKGSGPSGGSGGGANGTSFSYTFHGDPHAMFAEFFGGRNPFDTF-- 115

Query: 121 LFGSESNNNSGGQRGNNHN--IRGYSHREGLFRNGNCSSTASGG-AAEFKKAPAVENLLP 177
            FG  +     G+ G + +    G+    G F N N   + S    A  K+ P V + L 
Sbjct: 116 -FGQRN-----GEEGMDIDDPFSGFPMGMGGFTNVNFGRSRSAQEPARKKQDPPVTHDLR 169

Query: 178 CSLEEIYKGAKKKMRISRNVYDSVGKT-RTVEEILTVEIKPGWKKGTKITFPEKGNQEPG 236
            SLEEIY G  KKM+IS    +  GK+ R  ++ILT+E+K GWK+GTKITFP++G+Q   
Sbjct: 170 VSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSN 229

Query: 237 IIAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIV 296
            I AD++F++ +KPH +++RDG+D++    I+L EAL G T+++ TLDGR + +   D++
Sbjct: 230 NIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDVI 289

Query: 297 KPGTEIVVPNEGMPISKEP 315
           +PG    VP EG+P+ K P
Sbjct: 290 RPGMRRKVPGEGLPLPKTP 308

Interacts with HSP70 and can stimulate its ATPase activity. Stimulates the association between HSC70 and HIP.

Homo sapiens (taxid: 9606)

>sp|Q9QYJ3|DNJB1_MOUSE DnaJ homolog subfamily B member 1 OS=Mus musculus GN=Dnajb1 PE=2 SV=3

 Score =  219 bits (558), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 132/319 (41%), Positives = 194/319 (60%), Gaps = 15/319 (4%)

Query: 1   MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSD 60
           MG DYY  L + R A++D++K+AY+R A+ +HPDKN   K   AE KFK+I+EAYDVLSD
Sbjct: 1   MGKDYYQTLGLARGASDDEIKRAYRRQALRYHPDKN---KEPGAEEKFKEIAEAYDVLSD 57

Query: 61  PQKRQIYDLYGEEGLKSGTVPTSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEE 120
           P+KR+I+D YGEEGLK G+    S+  +   +  + +H   H   +  F  R+  D +  
Sbjct: 58  PRKREIFDRYGEEGLKGGSPSGGSSGGANGTSFSYTFHGDPHAMFAEFFGGRNPFDTF-- 115

Query: 121 LFGSESNNNSGGQRGNN--HNIRGYSHREGLFRNGNCS-STASGGAAEFKKAPAVENLLP 177
            FG  +     G+ G +       +    G F N N   S  S      K+ P V + L 
Sbjct: 116 -FGQRN-----GEEGMDIDDTFSSFPMGMGGFTNMNFGRSRPSQEPTRKKQDPPVTHDLR 169

Query: 178 CSLEEIYKGAKKKMRISRNVYDSVGKT-RTVEEILTVEIKPGWKKGTKITFPEKGNQEPG 236
            SLEEIY G  KKM+IS    +  GK+ R  ++ILT+E+K GWK+GTKITFP++G+Q   
Sbjct: 170 VSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKRGWKEGTKITFPKEGDQTSN 229

Query: 237 IIAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIV 296
            I AD++F++ +KPH +++RDG+D++    I+L EAL G T+++ TLDGR + +   D++
Sbjct: 230 NIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDVI 289

Query: 297 KPGTEIVVPNEGMPISKEP 315
           +PG    VP EG+P+ K P
Sbjct: 290 RPGMRRKVPGEGLPLPKTP 308

Interacts with HSP70 and can stimulate its ATPase activity. Stimulates the association between HSC70 and HIP.

Mus musculus (taxid: 10090)

>sp|Q2KIT4|DNJB4_BOVIN DnaJ homolog subfamily B member 4 OS=Bos taurus GN=DNAJB4 PE=2 SV=1

 Score =  219 bits (558), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 125/317 (39%), Positives = 192/317 (60%), Gaps = 15/317 (4%)

Query: 1   MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSD 60
           MG DYY IL + + A+++D+KKAY++ A+ +HPDKN   K  +AE +FK+++EAY+VLSD
Sbjct: 1   MGKDYYCILGIEKGASDEDIKKAYRKQALRFHPDKN---KSPQAEERFKEVAEAYEVLSD 57

Query: 61  PQKRQIYDLYGEEGLKSGTVPTSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEE 120
           P+KR+IYD +GEEGLK G   T     +     ++ +H   H   +  F      + +E 
Sbjct: 58  PKKREIYDQFGEEGLKGGAGGTDGQGGTF----RYTFHGDPHATFAAFFG---GSNPFEI 110

Query: 121 LFGSESNNNSGGQRGNNHNIRGYSHRE-GLFRNGNCSSTASGGAAEFKKAPAVENLLPCS 179
            FG       GG+  +   + G      G   NG      S G +  K+ P V + L  S
Sbjct: 111 FFG---RRMGGGRDSDEMEVDGDPFGAFGFSMNGYPRDRNSVGPSRLKQDPPVIHELRVS 167

Query: 180 LEEIYKGAKKKMRISRNVYDSVGKT-RTVEEILTVEIKPGWKKGTKITFPEKGNQEPGII 238
           LEEIY G  K+M+ISR   +  G++ RT ++ILT+EIK GWK+GTKITFP +G++ P  I
Sbjct: 168 LEEIYSGCTKRMKISRKRLNPDGRSYRTEDKILTIEIKKGWKEGTKITFPREGDETPTSI 227

Query: 239 AADLIFIVDEKPHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKP 298
            AD++F++ +K H  ++RDG++++   +I+L EAL G ++++ T+DGR + + + DIVKP
Sbjct: 228 PADIVFVIKDKDHPKFKRDGSNIIYTAKISLREALCGCSINVPTMDGRTIPMTINDIVKP 287

Query: 299 GTEIVVPNEGMPISKEP 315
           G    +   G+P  K P
Sbjct: 288 GMRRRIIGYGLPFPKNP 304

Probable chaperone.

Bos taurus (taxid: 9913)

>sp|O89114|DNJB5_MOUSE DnaJ homolog subfamily B member 5 OS=Mus musculus GN=Dnajb5 PE=2 SV=1

 Score =  215 bits (548), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 132/325 (40%), Positives = 191/325 (58%), Gaps = 20/325 (6%)

Query: 1   MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSD 60
           MG DYY IL +   ANED++KKAY+++A+ +HPDKN   K   AE KFK+I+EAYDVLSD
Sbjct: 1   MGKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKN---KEPNAEEKFKEIAEAYDVLSD 57

Query: 61  PQKRQIYDLYGEEGLKSGTVPTSSTSTSASRAGQHY-YHQRQHPNPSFRFNPRDAEDIYE 119
           P+KR +YD YGEEGLK     T   S+  S    HY +H   H   +  F   +  DI+ 
Sbjct: 58  PKKRSLYDQYGEEGLK-----TGGGSSGGSGGSFHYTFHGDPHATFASFFGGSNPFDIF- 111

Query: 120 ELFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTASGGAAEFK--------KAPA 171
               S S     G   ++ ++       G F     +  + G     +        + P 
Sbjct: 112 -FASSRSTRPFSGFDPDDMDVDEDEDPFGAFGRFGFNGLSRGPRRAPEPLYPRRKVQDPP 170

Query: 172 VENLLPCSLEEIYKGAKKKMRISRNVYDSVGKT-RTVEEILTVEIKPGWKKGTKITFPEK 230
           V + L  SLEEIY G+ K+M+I+R   +  G+T RT ++IL + IK GWK+GTKITFP++
Sbjct: 171 VVHELRVSLEEIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKE 230

Query: 231 GNQEPGIIAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLMI 290
           G+  P  I AD++F++ +KPHA +RRDG +++    I+L EAL G T+++ T+DGR + +
Sbjct: 231 GDATPDNIPADIVFVLKDKPHAHFRRDGTNVLYSALISLKEALCGCTVNIPTIDGRVIPL 290

Query: 291 PLTDIVKPGTEIVVPNEGMPISKEP 315
           P  D++KPGT   +  EG+P  K P
Sbjct: 291 PCNDVIKPGTVKRLRGEGLPFPKVP 315

Mus musculus (taxid: 10090)

>sp|Q5BIP8|DNJB5_BOVIN DnaJ homolog subfamily B member 5 OS=Bos taurus GN=DNAJB5 PE=2 SV=1

 Score =  214 bits (544), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 132/325 (40%), Positives = 191/325 (58%), Gaps = 20/325 (6%)

Query: 1   MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSD 60
           MG DYY IL +   ANED++KKAY+++A+ +HPDKN   K   AE KFK+I+EAYDVLSD
Sbjct: 1   MGKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKN---KEPNAEEKFKEIAEAYDVLSD 57

Query: 61  PQKRQIYDLYGEEGLKSGTVPTSSTSTSASRAGQHY-YHQRQHPNPSFRFNPRDAEDIYE 119
           P+KR +YD YGEEGLK     T   S+  S    HY +H   H   +  F   +  DI+ 
Sbjct: 58  PKKRGLYDQYGEEGLK-----TGGGSSGGSSGSFHYTFHGDPHATFASFFGGSNPFDIF- 111

Query: 120 ELFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTASGGAAEFK--------KAPA 171
               S S     G   ++ ++       G F     +  + G     +        + P 
Sbjct: 112 -FASSRSARPFSGFDPDDMDVDEDDDPFGAFGRFGFNGLSRGPRRAPEPLYPRRKVQDPP 170

Query: 172 VENLLPCSLEEIYKGAKKKMRISRNVYDSVGKT-RTVEEILTVEIKPGWKKGTKITFPEK 230
           V + L  SLEEIY G+ K+M+I+R   +  G+T RT ++IL + IK GWK+GTKITFP++
Sbjct: 171 VVHELRVSLEEIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKE 230

Query: 231 GNQEPGIIAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLMI 290
           G+  P  I AD++F++ +KPHA +RRDG +++    I+L EAL G T+++ T+DGR + +
Sbjct: 231 GDATPDNIPADIVFVLKDKPHAHFRRDGTNVLYSALISLKEALCGCTVNIPTIDGRVIPL 290

Query: 291 PLTDIVKPGTEIVVPNEGMPISKEP 315
           P  D++KPGT   +  EG+P  K P
Sbjct: 291 PCNDVIKPGTVKRLRGEGLPFPKVP 315

Bos taurus (taxid: 9913)

>sp|O75953|DNJB5_HUMAN DnaJ homolog subfamily B member 5 OS=Homo sapiens GN=DNAJB5 PE=1 SV=1

 Score =  213 bits (541), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 130/325 (40%), Positives = 191/325 (58%), Gaps = 20/325 (6%)

Query: 1   MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSD 60
           MG DYY IL +   ANED++KKAY+++A+ +HPDKN   K   AE KFK+I+EAYDVLSD
Sbjct: 1   MGKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKN---KEPNAEEKFKEIAEAYDVLSD 57

Query: 61  PQKRQIYDLYGEEGLKSGTVPTSSTSTSASRAGQHY-YHQRQHPNPSFRFNPRDAEDIYE 119
           P+KR +YD YGEEGLK+        ++  S    HY +H   H   +  F   +  DI+ 
Sbjct: 58  PKKRGLYDQYGEEGLKT-----GGGTSGGSSGSFHYTFHGDPHATFASFFGGSNPFDIF- 111

Query: 120 ELFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTASGGAAEFK--------KAPA 171
               S S     G   ++ ++       G F     +  + G     +        + P 
Sbjct: 112 -FASSRSTRPFSGFDPDDMDVDEDEDPFGAFGRFGFNGLSRGPRRAPEPLYPRRKVQDPP 170

Query: 172 VENLLPCSLEEIYKGAKKKMRISRNVYDSVGKT-RTVEEILTVEIKPGWKKGTKITFPEK 230
           V + L  SLEEIY G+ K+M+I+R   +  G+T RT ++IL + IK GWK+GTKITFP++
Sbjct: 171 VVHELRVSLEEIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKE 230

Query: 231 GNQEPGIIAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLMI 290
           G+  P  I AD++F++ +KPHA +RRDG +++    I+L EAL G T+++ T+DGR + +
Sbjct: 231 GDATPDNIPADIVFVLKDKPHAHFRRDGTNVLYSALISLKEALCGCTVNIPTIDGRVIPL 290

Query: 291 PLTDIVKPGTEIVVPNEGMPISKEP 315
           P  D++KPGT   +  EG+P  K P
Sbjct: 291 PCNDVIKPGTVKRLRGEGLPFPKVP 315

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	315
224135657	341	predicted protein [Populus trichocarpa]	0.974	0.900	0.739	1e-125
225456635	339	PREDICTED: dnaJ homolog subfamily B memb	0.955	0.887	0.704	1e-119
255540885	333	Chaperone protein dnaJ, putative [Ricinu	0.930	0.879	0.700	1e-115
356508606	351	PREDICTED: dnaJ homolog subfamily B memb	0.946	0.849	0.673	1e-114
356516746	351	PREDICTED: dnaJ homolog subfamily B memb	0.974	0.874	0.698	1e-114
15228294	350	putative DNAJ heat shock protein [Arabid	0.971	0.874	0.664	1e-113
297819404	350	hypothetical protein ARALYDRAFT_485157 [	0.971	0.874	0.664	1e-113
449469474	346	PREDICTED: dnaJ homolog subfamily B memb	0.980	0.893	0.691	1e-113
449487807	345	PREDICTED: LOW QUALITY PROTEIN: dnaJ hom	0.958	0.875	0.672	1e-113
356516748	351	PREDICTED: dnaJ homolog subfamily B memb	0.974	0.874	0.689	1e-112

>gi|224135657|ref|XP_002322128.1| predicted protein [Populus trichocarpa] gi|222869124|gb|EEF06255.1| predicted protein [Populus trichocarpa]

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 233/315 (73%), Positives = 263/315 (83%), Gaps = 8/315 (2%)

Query: 1   MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSD 60
           MG DYYNILKVNRNA+EDDL+K+YKRLAMIWHPDKNP+ KRTEAEAKFKQISEAYDVLSD
Sbjct: 1   MGVDYYNILKVNRNASEDDLRKSYKRLAMIWHPDKNPTAKRTEAEAKFKQISEAYDVLSD 60

Query: 61  PQKRQIYDLYGEEGLKSGTVPTSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEE 120
           PQKRQIYDLYGEEGLKSG  P  S STS     +HY+ QRQHPNPSFRF PR+AEDIYEE
Sbjct: 61  PQKRQIYDLYGEEGLKSGQCPPPSPSTS-----RHYF-QRQHPNPSFRFKPRNAEDIYEE 114

Query: 121 LFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTASGGAAEFKKAPAVENLLPCSL 180
           LFGSES    G +RGN    RG+        + + SS+  G   + KK  A+ENLLPCSL
Sbjct: 115 LFGSESGGGGGNERGNYS--RGHFRNNTNNSSSSSSSSYFGNGGDMKKPNAIENLLPCSL 172

Query: 181 EEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPGIIAA 240
           EE+YKGA KKM+I RN+++  G+ RT+EEILT+EIKPGWKKGTKITFPEKGNQEPGII A
Sbjct: 173 EELYKGATKKMKICRNIFEGTGRVRTLEEILTIEIKPGWKKGTKITFPEKGNQEPGIIPA 232

Query: 241 DLIFIVDEKPHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGT 300
           D++F+VDEKPHA Y RDGNDLV+ QEITLLEALTGKT DLTTLDGRN+++PLTDIVKPG 
Sbjct: 233 DIVFVVDEKPHATYVRDGNDLVIKQEITLLEALTGKTFDLTTLDGRNIVLPLTDIVKPGV 292

Query: 301 EIVVPNEGMPISKEP 315
           E+VVPNEGMPISKEP
Sbjct: 293 EVVVPNEGMPISKEP 307

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456635|ref|XP_002270193.1| PREDICTED: dnaJ homolog subfamily B member 13-like isoform 1 [Vitis vinifera]

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 224/318 (70%), Positives = 255/318 (80%), Gaps = 17/318 (5%)

Query: 1   MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSD 60
           MG DYYNILKVNRNA+EDDL++AY+RLAMIWHPDKNPS+KR EAEAKFKQISEAYDVLSD
Sbjct: 1   MGVDYYNILKVNRNASEDDLRRAYRRLAMIWHPDKNPSNKR-EAEAKFKQISEAYDVLSD 59

Query: 61  PQKRQIYDLYGEEGLKSGTVPTSSTSTSASRAG-QHYYHQRQHPNPSFRFNPRDAEDIYE 119
           PQKRQIYDLYGEE LKSG VP    ST   R G QH+ H   HPNPSFRFNPRDA+DIYE
Sbjct: 60  PQKRQIYDLYGEEALKSGQVPPPPAST---RGGPQHHNH---HPNPSFRFNPRDADDIYE 113

Query: 120 ELFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTASGGAAEFKKAPAVENLLPCS 179
           E FG + +    G  G   N     +++G FR  N       G+   +KA  VENLLPCS
Sbjct: 114 EFFGPDGSGTGAGGGGGGRN---RVYKDGFFRTSN----GDYGSQALRKAAPVENLLPCS 166

Query: 180 LEEIYKGAKKKMRISRNVYDSVG--KTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPGI 237
           LEE+YKGAKKKM+ISR + D+ G  K RTVEEIL+++IKPGWKKGTKITFPEKGNQEPG+
Sbjct: 167 LEELYKGAKKKMKISRTISDAFGYGKIRTVEEILSIDIKPGWKKGTKITFPEKGNQEPGV 226

Query: 238 IAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVK 297
           I ADLIF+VDEKPH +++RDGNDL+V +EITLLEALTGK L+L TLDGR+L I LTDIVK
Sbjct: 227 IPADLIFVVDEKPHLVFKRDGNDLIVDREITLLEALTGKALELKTLDGRSLEIQLTDIVK 286

Query: 298 PGTEIVVPNEGMPISKEP 315
           PG E+VVPNEGMPISKEP
Sbjct: 287 PGYEMVVPNEGMPISKEP 304

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540885|ref|XP_002511507.1| Chaperone protein dnaJ, putative [Ricinus communis] gi|223550622|gb|EEF52109.1| Chaperone protein dnaJ, putative [Ricinus communis]

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/321 (70%), Positives = 253/321 (78%), Gaps = 28/321 (8%)

Query: 1   MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSD 60
           MG DYYNILKVNRNA+EDDLK+AYKRLAMIWHPDKNPS KR EAEAKFKQISEAYDVL+D
Sbjct: 1   MGVDYYNILKVNRNASEDDLKRAYKRLAMIWHPDKNPSPKRREAEAKFKQISEAYDVLTD 60

Query: 61  PQKRQIYDLYGEEGLKSGTVPTSSTSTSASRAG------QHYYHQRQHPNPSFRFNPRDA 114
           P KRQIYDLYGEE LKSG  P    S+S+S +       +HYY ++QHPNPS   + R+A
Sbjct: 61  PHKRQIYDLYGEEALKSGQFPPPPPSSSSSSSSSSSSSSRHYYQRQQHPNPS---SFRNA 117

Query: 115 EDIYEELFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTASGGAAEFKKAPAVEN 174
           EDIYEE FGSE       +   N            + NGN          E +KA A+EN
Sbjct: 118 EDIYEEFFGSEGGGGFFNRSKTN------------YYNGNAH-------GETRKAAAIEN 158

Query: 175 LLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQE 234
           +LPCSLEE++KGA+KKMRI R+VYD+ GK RT+EEILT+EIKPGWKKGTKITFPEKGNQE
Sbjct: 159 VLPCSLEELFKGARKKMRILRDVYDASGKVRTLEEILTIEIKPGWKKGTKITFPEKGNQE 218

Query: 235 PGIIAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTD 294
           PGII ADLIF+VDEK HA+Y RDGNDLVV QEITLLEALTGKTLDLTTLDGR+LMIPLTD
Sbjct: 219 PGIIPADLIFVVDEKQHAIYMRDGNDLVVNQEITLLEALTGKTLDLTTLDGRDLMIPLTD 278

Query: 295 IVKPGTEIVVPNEGMPISKEP 315
           IVKPG E+VVPNEGMPIS+EP
Sbjct: 279 IVKPGAEVVVPNEGMPISREP 299

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508606|ref|XP_003523046.1| PREDICTED: dnaJ homolog subfamily B member 1-like [Glycine max]

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/334 (67%), Positives = 252/334 (75%), Gaps = 36/334 (10%)

Query: 1   MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSD 60
           MG DYYNILKVNRNA++DDLKKAYKRLA IWHPDKNP +  TEAEAKFK+ISEAYDVLSD
Sbjct: 1   MGMDYYNILKVNRNASDDDLKKAYKRLARIWHPDKNPVNN-TEAEAKFKRISEAYDVLSD 59

Query: 61  PQKRQIYDLYGEEGLKSGTVPTSSTSTSASRAGQHYYHQRQH----------------PN 104
           PQKRQIYDLYGEE LKSG  P   +S+S+S      +H RQ+                P 
Sbjct: 60  PQKRQIYDLYGEEALKSGQFPPPHSSSSSSS--SRAFHHRQNNNNNNNNNNNNKNNSNPP 117

Query: 105 P---SFRFNPRDAEDIYEELFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTASG 161
           P   SFRFNPRDA+DIY E FG E +  +GG              +  FR  N       
Sbjct: 118 PAASSFRFNPRDADDIYAEFFGPE-DIGAGGP-------------DAFFRTSNGGGAFGA 163

Query: 162 GAAEFKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKK 221
            AA  +KA AVEN LPCSLE++YKG KKKM+ISRNVYD+ GK R +EEILT+EIKPGWKK
Sbjct: 164 SAAAGRKAAAVENALPCSLEDLYKGVKKKMKISRNVYDAFGKCRNMEEILTIEIKPGWKK 223

Query: 222 GTKITFPEKGNQEPGIIAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEALTGKTLDLT 281
           GTKITFPEKGN EPG+I ADLIF++DEKPHALYRRDGNDLV+ QEITLLEALTGKTLDLT
Sbjct: 224 GTKITFPEKGNHEPGVIPADLIFVIDEKPHALYRRDGNDLVINQEITLLEALTGKTLDLT 283

Query: 282 TLDGRNLMIPLTDIVKPGTEIVVPNEGMPISKEP 315
           TLDGR+LMIPLTDIV+PG E+VVPNEGMPISKEP
Sbjct: 284 TLDGRSLMIPLTDIVRPGAEVVVPNEGMPISKEP 317

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516746|ref|XP_003527054.1| PREDICTED: dnaJ homolog subfamily B member 13-like isoform 1 [Glycine max]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 227/325 (69%), Positives = 254/325 (78%), Gaps = 18/325 (5%)

Query: 1   MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSD 60
           MG DYYNILKVNRNA++DDLKKAYKRLA IWHPDKNP +K TEAEAKFK+ISEAYDVLSD
Sbjct: 1   MGMDYYNILKVNRNASDDDLKKAYKRLARIWHPDKNPVNK-TEAEAKFKRISEAYDVLSD 59

Query: 61  PQKRQIYDLYGEEGLKSGTVP---TSSTSTSASRAGQHYYHQRQHPNP------SFRFNP 111
           PQKRQIYDLYGEE LKSG  P    SS+S+S+     H++H RQ+ NP      SFRFNP
Sbjct: 60  PQKRQIYDLYGEEALKSGQFPPPPQSSSSSSSRAFHHHHHHHRQNNNPPPASASSFRFNP 119

Query: 112 RDAEDIYEELFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTASGGAAEFKKAPA 171
           RDA+DIY E FG +        R      RG    +  FR  N    A   +A   +  A
Sbjct: 120 RDADDIYAEFFGPDDIGAGASSR------RG-GGPDAFFRTSNGGGAAFSASAAAGRKAA 172

Query: 172 -VENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEK 230
            VEN LPCSLE++YKG KKKM+ISRNVYD+ GK   VEEILT+EIKPGWKKGTKITFPEK
Sbjct: 173 AVENALPCSLEDLYKGVKKKMKISRNVYDAFGKCGDVEEILTIEIKPGWKKGTKITFPEK 232

Query: 231 GNQEPGIIAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLMI 290
           GN+EPG+I ADLIF++DEKPHALYRRDGNDLV+ QEITLLEALTGKTLDLTTLDGR+LMI
Sbjct: 233 GNREPGVIPADLIFVIDEKPHALYRRDGNDLVINQEITLLEALTGKTLDLTTLDGRSLMI 292

Query: 291 PLTDIVKPGTEIVVPNEGMPISKEP 315
           PLTDIVKPG E+VVPNEGMPISKEP
Sbjct: 293 PLTDIVKPGAEVVVPNEGMPISKEP 317

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228294|ref|NP_190377.1| putative DNAJ heat shock protein [Arabidopsis thaliana] gi|4678334|emb|CAB41145.1| heat shock-like protein [Arabidopsis thaliana] gi|22531016|gb|AAM97012.1| heat shock protein-like protein [Arabidopsis thaliana] gi|23197962|gb|AAN15508.1| heat shock protein-like protein [Arabidopsis thaliana] gi|332644828|gb|AEE78349.1| putative DNAJ heat shock protein [Arabidopsis thaliana]

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/325 (66%), Positives = 253/325 (77%), Gaps = 19/325 (5%)

Query: 1   MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSD 60
           MG DYYNILKVN NA EDDLKKAYKRLAMIWHPDKNPS +R EAEAKFK+ISEAYDVLSD
Sbjct: 1   MGVDYYNILKVNHNATEDDLKKAYKRLAMIWHPDKNPSTRRDEAEAKFKRISEAYDVLSD 60

Query: 61  PQKRQIYDLYGEEGLKSGTVPTSSTSTSAS-------RAGQHYYHQRQHP--NPSFRFNP 111
           PQKRQIYDLYGEEGLKSG +P SS+S ++S       R    + H+ QHP    SFRFNP
Sbjct: 61  PQKRQIYDLYGEEGLKSGKIPNSSSSEASSSSSSSSSRYPHFHQHRPQHPPNASSFRFNP 120

Query: 112 RDAEDIYEELFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSST-ASGGAAEFKKAP 170
           RDAEDIY E FGSE+   S    G  +           FRNG+ ++  A+G + E +K P
Sbjct: 121 RDAEDIYAEFFGSENGGGSNNAGGRGNRA---------FRNGHFNTGGANGYSGEMRKVP 171

Query: 171 AVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEK 230
           A+EN LP SLE++YKG  KKMRI+RNVYD+ G+     EIL +EIKPGWKKGTK+TFP+K
Sbjct: 172 AMENPLPVSLEDLYKGVVKKMRITRNVYDASGRMMVEAEILPIEIKPGWKKGTKLTFPKK 231

Query: 231 GNQEPGIIAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLMI 290
           GN+EPGII AD++F+V+EKPH +Y+RDGNDL+V QEITLLEALTGKT++L TLDGR LMI
Sbjct: 232 GNEEPGIIPADIVFVVEEKPHPVYKRDGNDLLVSQEITLLEALTGKTVNLITLDGRTLMI 291

Query: 291 PLTDIVKPGTEIVVPNEGMPISKEP 315
           PLT+I+KP  EIVVPNEGMPISKEP
Sbjct: 292 PLTEIIKPDHEIVVPNEGMPISKEP 316

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819404|ref|XP_002877585.1| hypothetical protein ARALYDRAFT_485157 [Arabidopsis lyrata subsp. lyrata] gi|297323423|gb|EFH53844.1| hypothetical protein ARALYDRAFT_485157 [Arabidopsis lyrata subsp. lyrata]

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/325 (66%), Positives = 252/325 (77%), Gaps = 19/325 (5%)

Query: 1   MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSD 60
           MG DYYNILKVN NA EDDLKKAYKRLAMIWHPDKNPS +R EAEAKFK+ISEAYDVLSD
Sbjct: 1   MGVDYYNILKVNHNATEDDLKKAYKRLAMIWHPDKNPSTRRDEAEAKFKRISEAYDVLSD 60

Query: 61  PQKRQIYDLYGEEGLKSGTVPTSSTSTSAS--------RAGQHYYHQRQHP--NPSFRFN 110
           PQKRQIYDLYGEEGLKSG +P SS+S+ AS        R    + H+ QHP    +FRFN
Sbjct: 61  PQKRQIYDLYGEEGLKSGKIPNSSSSSEASSSSSSSSSRYSHFHQHRPQHPPNAAAFRFN 120

Query: 111 PRDAEDIYEELFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTASGGAAEFKKAP 170
           PRDAEDIY E FGSE+     G    N      ++R G F  G     A+G + E +K P
Sbjct: 121 PRDAEDIYAEFFGSENGGGGNGGGRGNR-----TYRNGHFNTGG----ANGYSGEMRKVP 171

Query: 171 AVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEK 230
           AVEN LP SLE++YKG  KKMR++RNVYD+ G+    EEIL ++IKPGWKKGTK+TFP+K
Sbjct: 172 AVENPLPVSLEDLYKGVVKKMRLTRNVYDASGRMMVEEEILPIDIKPGWKKGTKLTFPKK 231

Query: 231 GNQEPGIIAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLMI 290
           GN+EPGII AD+IF+V+EKPH +Y+RDGNDL+V QEITLLEALTGKT++L TLDGR L+I
Sbjct: 232 GNEEPGIIPADIIFVVEEKPHPVYKRDGNDLLVNQEITLLEALTGKTVNLITLDGRTLLI 291

Query: 291 PLTDIVKPGTEIVVPNEGMPISKEP 315
           PLT+I+KP  EIVVPNEGMPISKEP
Sbjct: 292 PLTEIIKPDHEIVVPNEGMPISKEP 316

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469474|ref|XP_004152445.1| PREDICTED: dnaJ homolog subfamily B member 1-like [Cucumis sativus]

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/318 (69%), Positives = 254/318 (79%), Gaps = 9/318 (2%)

Query: 1   MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSD 60
           MG DYYNILKV+R+A+++DLK+AYKRLA+ WHPDKNPS+K  EAEAKFKQISEAYDVLSD
Sbjct: 1   MGKDYYNILKVSRSASDEDLKRAYKRLALFWHPDKNPSNKH-EAEAKFKQISEAYDVLSD 59

Query: 61  PQKRQIYDLYGEEGLKSGTVPTSSTSTSASRAGQHYYHQ--RQHPNPS-FRFNPRDAEDI 117
           PQKRQIYDLYGEE LKSG +P  +   ++S A    Y Q  RQHPN S F+FNPR+A+DI
Sbjct: 60  PQKRQIYDLYGEETLKSGKIPPPNPHATSSSAYSPVYQQFQRQHPNTSTFKFNPRNADDI 119

Query: 118 YEELFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTASGGAAEFKKAPAVENLLP 177
           Y E FGSE    S    G   + RG   R+  FR  N     SG   + +KA AVE+ LP
Sbjct: 120 YAEFFGSEGGGGSNNVDGGGKS-RGV--RDEFFRFQNGMENGSG--VKGRKAAAVESALP 174

Query: 178 CSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPGI 237
           C+LEE++KGAKKKMRISRNVYD  GK RTVEEILT++IKPGWKKGTKITFP+KGNQEPGI
Sbjct: 175 CTLEELFKGAKKKMRISRNVYDVSGKFRTVEEILTIDIKPGWKKGTKITFPQKGNQEPGI 234

Query: 238 IAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVK 297
           I ADLIF+VDEKPHA+YRRDGNDLVV  EITLLE+LTGKT +LT+LDGR L IP+TDIVK
Sbjct: 235 IPADLIFVVDEKPHAIYRRDGNDLVVNHEITLLESLTGKTFELTSLDGRTLTIPITDIVK 294

Query: 298 PGTEIVVPNEGMPISKEP 315
           PG E+V+ NEGMPISKEP
Sbjct: 295 PGDEMVLANEGMPISKEP 312

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449487807|ref|XP_004157810.1| PREDICTED: LOW QUALITY PROTEIN: dnaJ homolog subfamily B member 13-like [Cucumis sativus]

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/324 (67%), Positives = 253/324 (78%), Gaps = 22/324 (6%)

Query: 1   MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSD 60
           MG DYYNILKV+R+A+++DLK+AYKRLA+ WHPDKNPS+K  EAEAKFKQISEAYDVLSD
Sbjct: 1   MGKDYYNILKVSRSASDEDLKRAYKRLALFWHPDKNPSNKH-EAEAKFKQISEAYDVLSD 59

Query: 61  PQKRQIYDLYGEEGLKSGTVPTSSTSTSASRAGQHYYHQ--RQHPNPS-FRFNPRDAEDI 117
           PQKRQIYDLYGEE LKSG +P  +   ++S A    Y Q  RQHPN S F+FNPR+A+DI
Sbjct: 60  PQKRQIYDLYGEETLKSGKIPPPNPHATSSSAYSPVYQQFQRQHPNTSTFKFNPRNADDI 119

Query: 118 YEELFGSESN------NNSGGQRGNNHNIRGYSHREGLFRNGNCSSTASGGAAEFKKAPA 171
           Y E FGSE        +  G  RG     R        F+NG      +G   + +KA A
Sbjct: 120 YAEFFGSEGGGGSNNVDGGGKSRGVRDEFR--------FQNG----MENGSGVKGRKAAA 167

Query: 172 VENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKG 231
           VE+ LPC+LEE++KGAKKKMRISRNVYD  GK RTVEEILT++IKPGWKKGTKITFP+KG
Sbjct: 168 VESALPCTLEELFKGAKKKMRISRNVYDVSGKFRTVEEILTIDIKPGWKKGTKITFPQKG 227

Query: 232 NQEPGIIAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLMIP 291
           NQEPGII ADLIF+VDEKPHA+YRRDGNDLVV  EITLLE+LTGKT +LT+LDGR L IP
Sbjct: 228 NQEPGIIPADLIFVVDEKPHAIYRRDGNDLVVNHEITLLESLTGKTFELTSLDGRTLTIP 287

Query: 292 LTDIVKPGTEIVVPNEGMPISKEP 315
           +TDIVKPG E+V+ NEGMPISKEP
Sbjct: 288 ITDIVKPGDEMVLANEGMPISKEP 311

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516748|ref|XP_003527055.1| PREDICTED: dnaJ homolog subfamily B member 13-like isoform 2 [Glycine max]

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 224/325 (68%), Positives = 251/325 (77%), Gaps = 18/325 (5%)

Query: 1   MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSD 60
           MG DYYNILKVNRNA++DDLKKAYKRLA IWHPDKNP +K TEAEAKFK+ISEAYDVLSD
Sbjct: 1   MGMDYYNILKVNRNASDDDLKKAYKRLARIWHPDKNPVNK-TEAEAKFKRISEAYDVLSD 59

Query: 61  PQKRQIYDLYGEEGLKSGTVP---TSSTSTSASRAGQHYYHQRQHPNP------SFRFNP 111
           PQKRQIYDLYGEE LKSG  P    SS+S+S+     H++H RQ+ NP      SFRFNP
Sbjct: 60  PQKRQIYDLYGEEALKSGQFPPPPQSSSSSSSRAFHHHHHHHRQNNNPPPASASSFRFNP 119

Query: 112 RDAEDIYEELFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTASGGAAEFKKAPA 171
           RDA+DIY E FG +        R      RG    +  FR  N    A   +A   +  A
Sbjct: 120 RDADDIYAEFFGPDDIGAGASSR------RG-GGPDAFFRTSNGGGAAFSASAAAGRKAA 172

Query: 172 -VENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEK 230
            VEN LPCSLE++YKG KKKM+ISRNVYD+ G      EILT+EIKPGWKKGTKITFPEK
Sbjct: 173 AVENALPCSLEDLYKGVKKKMKISRNVYDAFGSELVDAEILTIEIKPGWKKGTKITFPEK 232

Query: 231 GNQEPGIIAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLMI 290
           GN+EPG+I ADLIF++DEKPHALYRRDGNDLV+ QEITLLEALTGKTLDLTTLDGR+LMI
Sbjct: 233 GNREPGVIPADLIFVIDEKPHALYRRDGNDLVINQEITLLEALTGKTLDLTTLDGRSLMI 292

Query: 291 PLTDIVKPGTEIVVPNEGMPISKEP 315
           PLTDIVKPG E+VVPNEGMPISKEP
Sbjct: 293 PLTDIVKPGAEVVVPNEGMPISKEP 317

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	315
TAIR|locus:2097880	350	AT3G47940 [Arabidopsis thalian	0.971	0.874	0.606	1.1e-96
TAIR|locus:2825170	331	AT1G59725 [Arabidopsis thalian	0.666	0.634	0.502	7.1e-90
TAIR|locus:2012743	349	AT1G10350 [Arabidopsis thalian	0.968	0.873	0.542	1.1e-85
TAIR|locus:2097638	323	AT3G08910 [Arabidopsis thalian	0.628	0.613	0.485	5.1e-81
TAIR|locus:2054809	337	AT2G20560 [Arabidopsis thalian	0.958	0.896	0.511	4.2e-79
TAIR|locus:2179127	335	AT5G01390 [Arabidopsis thalian	0.961	0.904	0.498	1.6e-77
TAIR|locus:2121368	348	AT4G28480 [Arabidopsis thalian	0.971	0.879	0.484	2.1e-77
TAIR|locus:2179429	347	AT5G25530 [Arabidopsis thalian	0.946	0.858	0.487	3.7e-71
ZFIN|ZDB-GENE-040801-192	340	dnajb4 "DnaJ (Hsp40) homolog,	0.492	0.455	0.391	9.9e-56
UNIPROTKB|F1NKV0	342	DNAJB4 "Uncharacterized protei	0.492	0.453	0.410	1.3e-53

TAIR|locus:2097880 AT3G47940 [Arabidopsis thaliana (taxid:3702)]

 Score = 961 (343.3 bits), Expect = 1.1e-96, P = 1.1e-96
 Identities = 197/325 (60%), Positives = 227/325 (69%)

Query:     1 MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSD 60
             MG DYYNILKVN NA EDDLKKAYKRLAMIWHPDKNPS +R EAEAKFK+ISEAYDVLSD
Sbjct:     1 MGVDYYNILKVNHNATEDDLKKAYKRLAMIWHPDKNPSTRRDEAEAKFKRISEAYDVLSD 60

Query:    61 PQKRQIYDLYGEEGLKX-------XXXXXXXXXXXXXRAGQHYYHQRQHP-NPS-FRFNP 111
             PQKRQIYDLYGEEGLK                     R    + H+ QHP N S FRFNP
Sbjct:    61 PQKRQIYDLYGEEGLKSGKIPNSSSSEASSSSSSSSSRYPHFHQHRPQHPPNASSFRFNP 120

Query:   112 RDAEDIYEELFXXXXXXXXXXXXXXXXXIRGYSHREGLFRNGNCSST-ASGGAAEFKKAP 170
             RDAEDIY E F                   G  +R   FRNG+ ++  A+G + E +K P
Sbjct:   121 RDAEDIYAEFFGSENGGGSNNAG-------GRGNRA--FRNGHFNTGGANGYSGEMRKVP 171

Query:   171 AVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEK 230
             A+EN LP SLE++YKG  KKMRI+RNVYD+ G+     EIL +EIKPGWKKGTK+TFP+K
Sbjct:   172 AMENPLPVSLEDLYKGVVKKMRITRNVYDASGRMMVEAEILPIEIKPGWKKGTKLTFPKK 231

Query:   231 GNQEPGIIAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEAXXXXXXXXXXXXXRNLMI 290
             GN+EPGII AD++F+V+EKPH +Y+RDGNDL+V QEITLLEA             R LMI
Sbjct:   232 GNEEPGIIPADIVFVVEEKPHPVYKRDGNDLLVSQEITLLEALTGKTVNLITLDGRTLMI 291

Query:   291 PLTDIVKPGTEIVVPNEGMPISKEP 315
             PLT+I+KP  EIVVPNEGMPISKEP
Sbjct:   292 PLTEIIKPDHEIVVPNEGMPISKEP 316

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2825170 AT1G59725 [Arabidopsis thaliana (taxid:3702)]

 Score = 556 (200.8 bits), Expect = 7.1e-90, Sum P(2) = 7.1e-90
 Identities = 112/223 (50%), Positives = 146/223 (65%)

Query:    94 QHYYHQ--RQHPNPSFRFNPRDAEDIYEELFXXXXXXXXXXXXXXXXXIRGYSHREGLFR 151
             QH Y      + N  FR+ PRDAEDI+ E F                 + G     G F+
Sbjct:    86 QHNYSSGNNNNYNAGFRYYPRDAEDIFAEFFGASEKVFDGG-------VGG----GGRFK 134

Query:   152 NGNCSSTASGGAAEFKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEIL 211
             +    S  +      +KAPA+E+ L C+LEE+YKG ++KM+ISR V D +GK++ VEEIL
Sbjct:   135 SAEAGSQTNRKTPVNRKAPAIESKLACTLEELYKGGRRKMKISRVVPDGLGKSKPVEEIL 194

Query:   212 TVEIKPGWKKGTKITFPEKGNQEPGIIAADLIFIVDEKPHALYRRDGNDLVVGQEITLLE 271
              ++I PGWKKGTKITFPEKGNQEPG+  ADLIF++DEKPH++Y+RDGNDL+V ++++LLE
Sbjct:   195 KIDITPGWKKGTKITFPEKGNQEPGVTPADLIFVIDEKPHSVYKRDGNDLIVDKKVSLLE 254

Query:   272 AXXXXXXXXXXXXXRNLMIPLTDIVKPGTEIVVPNEGMPISKE 314
             A             RNL IP+ DIVKPG EIV+P+EGMPISKE
Sbjct:   255 ALTGITLSLTTLDGRNLTIPVLDIVKPGQEIVIPSEGMPISKE 297

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2012743 AT1G10350 [Arabidopsis thaliana (taxid:3702)]

 Score = 857 (306.7 bits), Expect = 1.1e-85, P = 1.1e-85
 Identities = 177/326 (54%), Positives = 218/326 (66%)

Query:     1 MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSD 60
             MG DYYN+LKVNRNANEDDLKK+Y+R+AM WHPDKNP+ K+ EAEAKFKQISEAYDVLSD
Sbjct:     1 MGVDYYNVLKVNRNANEDDLKKSYRRMAMKWHPDKNPTSKK-EAEAKFKQISEAYDVLSD 59

Query:    61 PQKRQIYDLYGEEGLKXXXXXXXXXXXXXXRAGQHYYHQRQHPNPSFRFNPRDAEDIYEE 120
             PQ+RQIYD YGEEGLK              +  Q  Y      N  FR+ PRDAEDI+ E
Sbjct:    60 PQRRQIYDQYGEEGLKSTDLPTAAETAAHQQ--QRSYSSS---NSEFRYYPRDAEDIFAE 114

Query:   121 LFXXXXXXXXXXXXXXXXXIRGYSHREG--LFRNGNCSSTASGGAAEF---------KKA 169
              F                  RG     G   F++    S A+               +KA
Sbjct:   115 FFGESGDAFGGGSSGRT---RGDGGDGGGRRFKSAEAGSQANRKTPPTNKKTTPPANRKA 171

Query:   170 PAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPE 229
             PA+E+ L C+LEE+YKGAKKKMRISR V D  GK +TV+EIL ++IKPGWKKGTKITFPE
Sbjct:   172 PAIESKLACTLEELYKGAKKKMRISRVVPDDFGKPKTVQEILKIDIKPGWKKGTKITFPE 231

Query:   230 KGNQEPGIIAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEAXXXXXXXXXXXXXRNLM 289
             KGNQEPG+  ADLIF+VDEKPH++++RDGNDL++ ++++L++A             R+L 
Sbjct:   232 KGNQEPGVTPADLIFVVDEKPHSVFKRDGNDLILEKKVSLIDALTGLTISVTTLDGRSLT 291

Query:   290 IPLTDIVKPGTEIVVPNEGMPISKEP 315
             IP+ DIVKPG EIV+PNEGMP +K+P
Sbjct:   292 IPVLDIVKPGQEIVIPNEGMP-TKDP 316

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2097638 AT3G08910 [Arabidopsis thaliana (taxid:3702)]

 Score = 500 (181.1 bits), Expect = 5.1e-81, Sum P(2) = 5.1e-81
 Identities = 102/210 (48%), Positives = 132/210 (62%)

Query:   106 SFRFNPRDAEDIYEELFXXXXXXXXXXXXXXXXXIRGYSHREGLFRNGNCSSTASGGAAE 165
             SFRFN R A+DI+ E F                   G+   E +F         S     
Sbjct:    93 SFRFNGRSADDIFSEFFGFTRPFGDSRGAGPS---NGFRFAEDVF---------SSNVVP 140

Query:   166 FKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKI 225
              +KA  +E  LPCSLE++YKG  KKM+ISR+V DS G+  TVEEILT+EIKPGWKKGTKI
Sbjct:   141 PRKAAPIERQLPCSLEDLYKGVSKKMKISRDVLDSSGRPTTVEEILTIEIKPGWKKGTKI 200

Query:   226 TFPEKGNQEPGIIAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEAXXXXXXXXXXXXX 285
             TFPEKGN++ GII +DL+FIVDEKPHA+++RDGNDLV+ Q+I L+EA             
Sbjct:   201 TFPEKGNEQRGIIPSDLVFIVDEKPHAVFKRDGNDLVMTQKIPLVEALTGYTAQVSTLDG 260

Query:   286 RNLMIPLTDIVKPGTEIVVPNEGMPISKEP 315
             R++ +P+ +++ P  E VV  EGMPI K+P
Sbjct:   261 RSVTVPINNVISPSYEEVVKGEGMPIPKDP 290

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2054809 AT2G20560 [Arabidopsis thaliana (taxid:3702)]

 Score = 795 (284.9 bits), Expect = 4.2e-79, P = 4.2e-79
 Identities = 162/317 (51%), Positives = 207/317 (65%)

Query:     1 MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSD 60
             MG DYY +L+V+R+A++DDLKKAY++LAM WHPDKNP++K+ +AEA FKQISEAY+VLSD
Sbjct:     1 MGVDYYKVLQVDRSASDDDLKKAYRKLAMKWHPDKNPNNKK-DAEAMFKQISEAYEVLSD 59

Query:    61 PQKRQIYDLYGEEGLKXXXXXXXXXXXXXXRAGQHYYHQRQHPNPSFRFNPRDAEDIYEE 120
             PQK+ +YD YGEEGLK                G  Y+     P  SFRFNPR+A+DI+ E
Sbjct:    60 PQKKAVYDQYGEEGLKGNVPPPDA-------GGATYFSTGDGPT-SFRFNPRNADDIFAE 111

Query:   121 LFXXXXXXXXXXXXXXXXXIRGYSHREGLFRNGNCSSTAS---GGAAEFKKAPAVENLLP 177
              F                      +    F  G      S   GGA   +KA  +EN LP
Sbjct:   112 FFGFSSPFGGGRGGTRFSSSMFGDNMFASFGEGGGGGGGSMHHGGA---RKAAPIENKLP 168

Query:   178 CSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPGI 237
             CSLE++YKG  KKMRISR + D  GKT  VEEILT+++KPGWKKGTKITFPEKGN++PG+
Sbjct:   169 CSLEDLYKGTTKKMRISREIADVSGKTMQVEEILTIDVKPGWKKGTKITFPEKGNEQPGV 228

Query:   238 IAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEAXXXXXXXXXXXXXRNLMIPLTDIVK 297
             I ADL+FI+DEKPH ++ R+GNDL+V Q+I+L+EA             R L IP+T++V 
Sbjct:   229 IPADLVFIIDEKPHPVFTREGNDLIVTQKISLVEALTGYTVNLTTLDGRRLTIPVTNVVH 288

Query:   298 PGTEIVVPNEGMPISKE 314
             P  E VVP EGMP+ K+
Sbjct:   289 PEYEEVVPKEGMPLQKD 305

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS;RCA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2179127 AT5G01390 [Arabidopsis thaliana (taxid:3702)]

 Score = 780 (279.6 bits), Expect = 1.6e-77, P = 1.6e-77
 Identities = 157/315 (49%), Positives = 206/315 (65%)

Query:     1 MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSD 60
             MG D+Y +L+V+R+AN+D+LKKAY++LAM WHPDKNP++K+ EAEAKFKQISEAYDVLSD
Sbjct:     1 MGVDFYKVLEVDRSANDDELKKAYRKLAMKWHPDKNPNNKK-EAEAKFKQISEAYDVLSD 59

Query:    61 PQKRQIYDLYGEEGLKXXXXXXXXXXXXXXRAGQHYYHQRQHPNPSFRFNPRDAEDIYEE 120
             PQKR IY+ YGEEGL                AG  Y         SFRFNPR A+DI+ E
Sbjct:    60 PQKRAIYEQYGEEGLNQAPPPG---------AGGGY-PGGSDAGASFRFNPRSADDIFSE 109

Query:   121 LFXXXXXXXXXXXXXXXXXIRGYSHREGLFRNGNCSSTASGGAAEFKKAPAVENLLPCSL 180
              F                   G+ + + +F +   ++T    +   +K+  +E  LPCSL
Sbjct:   110 FFGFTRPSFGTGSDSRAGP-SGFRYGDDIFASFRAATTGGEASIPSRKSAPIERQLPCSL 168

Query:   181 EEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPGIIAA 240
             E++YKG  KKM+ISR+V DS G+   VEEILT+EIKPGWKKGTKITF EKGN+  G+I +
Sbjct:   169 EDLYKGVSKKMKISRDVLDSSGRPTPVEEILTIEIKPGWKKGTKITFLEKGNEHRGVIPS 228

Query:   241 DLIFIVDEKPHALYRRDGNDLVVGQEITLLEAXXXXXXXXXXXXXRNLMIPLTDIVKPGT 300
             DL+FIVDEKPH +++RDGNDLVV Q+I+L++A             R L +P+ +++ P  
Sbjct:   229 DLVFIVDEKPHPVFKRDGNDLVVMQKISLVDALTGYTAQVTTLDGRTLTVPVNNVISPSY 288

Query:   301 EIVVPNEGMPISKEP 315
             E VV  EGMPI K+P
Sbjct:   289 EEVVKGEGMPIPKDP 303

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2121368 AT4G28480 [Arabidopsis thaliana (taxid:3702)]

 Score = 779 (279.3 bits), Expect = 2.1e-77, P = 2.1e-77
 Identities = 157/324 (48%), Positives = 204/324 (62%)

Query:     1 MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSD 60
             MG DYY +L+V+R+AN+DDLKKAY++LAM WHPDKNP++K+ +AEAKFKQISEAYDVLSD
Sbjct:     1 MGVDYYKVLQVDRSANDDDLKKAYRKLAMKWHPDKNPNNKK-DAEAKFKQISEAYDVLSD 59

Query:    61 PQKRQIYDLYGEEGLKXXXXXXXXXXXXXXRAGQHYYHQRQHPNPSFRFNPRDAEDIYEE 120
             PQKR +YD YGEEGLK               +G  Y+      + SFRFNPR A+DI+ E
Sbjct:    60 PQKRAVYDQYGEEGLKGNVPPPNAAT-----SGASYFSTGDGSS-SFRFNPRSADDIFAE 113

Query:   121 LFXXXXXXXXXXXXXXXXXIRGYSHREGLFRNGNCSSTASGGA----------AEFKKAP 170
              F                        + ++ +        GGA          A  +K  
Sbjct:   114 FFGFSTPFGGGGGGTGGQRFASRMFGDDMYASFG-EGAGGGGAMHHHHHHHHHAAARKVA 172

Query:   171 AVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEK 230
              +EN LPCSLE++YKG  KKM+ISR + D  GK   VEEILT+ +KPGWKKGTKITFPEK
Sbjct:   173 PIENKLPCSLEDLYKGTTKKMKISREIVDVSGKAMQVEEILTIGVKPGWKKGTKITFPEK 232

Query:   231 GNQEPGIIAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEAXXXXXXXXXXXXXRNLMI 290
             GN+ PG+I ADL+FI+DEKPH ++ R+GNDL+V Q+++L +A             R L I
Sbjct:   233 GNEHPGVIPADLVFIIDEKPHPVFTREGNDLIVTQKVSLADALTGYTANIATLDGRTLTI 292

Query:   291 PLTDIVKPGTEIVVPNEGMPISKE 314
             P+T+++ P  E VVP EGMP+ K+
Sbjct:   293 PITNVIHPEYEEVVPKEGMPLQKD 316

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2179429 AT5G25530 [Arabidopsis thaliana (taxid:3702)]

 Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
 Identities = 162/332 (48%), Positives = 197/332 (59%)

Query:     1 MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYD---- 56
             MG DYY+ILKVNRNA EDDLKK+Y++LAM WHPDKNP+ K TEAEAKFKQISEAY+    
Sbjct:     1 MGLDYYDILKVNRNATEDDLKKSYRKLAMKWHPDKNPNTK-TEAEAKFKQISEAYEAKYE 59

Query:    57 ----VLSDPQKRQIYDLYGEEGLKXXXXXXXXXXXXXXRAGQHYYHQRQHPNPSFRFNPR 112
                 VLSDPQKR +YD YGEEGL               RAG               FNPR
Sbjct:    60 VMFQVLSDPQKRAVYDQYGEEGLSDMPPPGSTGNNG--RAGG--------------FNPR 103

Query:   113 DAEDIYEELFXXXXXXXXXXXX---XXXXXIRGYSHREGLFRNGNCSS------TASGGA 163
             +AEDI+ E F                      G     G F  GN  S      T S G 
Sbjct:   104 NAEDIFAEFFGSSPFGFGSAGGPGRSMRFQSDGGGGMFGGFGGGNNGSENNIFRTYSEGT 163

Query:   164 AEFKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGT 223
                KK P VE+ LPCSLEE+Y G+ +KM+ISR++ D+ G+     EILT+ +KPGWKKGT
Sbjct:   164 PAPKKPPPVESKLPCSLEELYSGSTRKMKISRSIVDANGRQAQETEILTIVVKPGWKKGT 223

Query:   224 KITFPEKGNQEPGIIAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEAXXXXXXXXXXX 283
             KI FP+KGN++   + ADL+F++DEKPH L+ RDGNDL+  + +TL EA           
Sbjct:   224 KIKFPDKGNEQVNQLPADLVFVIDEKPHDLFTRDGNDLITSRRVTLAEAIGGTTVNINTL 283

Query:   284 XXRNLMIPLTDIVKPGTEIVVPNEGMPISKEP 315
               RNL + + +IV PG E VVP EGMPI+KEP
Sbjct:   284 DGRNLPVGVAEIVSPGYEFVVPGEGMPIAKEP 315

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

ZFIN|ZDB-GENE-040801-192 dnajb4 "DnaJ (Hsp40) homolog, subfamily B, member 4" [Danio rerio (taxid:7955)]

 Score = 333 (122.3 bits), Expect = 9.9e-56, Sum P(2) = 9.9e-56
 Identities = 61/156 (39%), Positives = 99/156 (63%)

Query:   161 GGAAEFKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKT-RTVEEILTVEIKPGW 219
             GG    K+ PA+ + L  SLEE++ G+ K+M+ISR   +  G+T RT ++ILT+EIK GW
Sbjct:   152 GGPPRRKQDPAIHHELRVSLEEVFHGSTKRMKISRKRLNPDGRTLRTEDKILTIEIKRGW 211

Query:   220 KKGTKITFPEKGNQEPGIIAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEAXXXXXXX 279
             K+GTKITFP +G++ P  I AD++F++ +KPH  +RR+G+D+V    ++L ++       
Sbjct:   212 KEGTKITFPREGDETPNTIPADIVFVIKDKPHGHFRREGSDIVYPVRVSLRQSLCGCSVT 271

Query:   280 XXXXXXRNLMIPLTDIVKPGTEIVVPNEGMPISKEP 315
                   +   + +TD++KPG   V+  +G+P  K P
Sbjct:   272 VSTIDGKTCNMKITDVIKPGMRKVIAGQGLPFPKNP 307

GO:0006457 "protein folding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1NKV0 DNAJB4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 314 (115.6 bits), Expect = 1.3e-53, Sum P(2) = 1.3e-53
 Identities = 64/156 (41%), Positives = 97/156 (62%)

Query:   161 GGAAEFKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKT-RTVEEILTVEIKPGW 219
             G     K+ P V + L  SLEEIY G  K+MRISR   +  G++ RT ++ILT+EIK GW
Sbjct:   154 GSQIRRKQDPPVIHELKVSLEEIYHGCTKRMRISRKRLNPDGRSVRTEDKILTIEIKRGW 213

Query:   220 KKGTKITFPEKGNQEPGIIAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEAXXXXXXX 279
             K+GTKITFP++G++ P  I AD++FI+ +KPH+ ++RDG+++V   +I+L EA       
Sbjct:   214 KEGTKITFPKEGDETPNTIPADIVFIIKDKPHSHFKRDGSNIVYPVKISLREALCGSSIN 273

Query:   280 XXXXXXRNLMIPLTDIVKPGTEIVVPNEGMPISKEP 315
                   R + + + ++VKPG    +   G+P  K P
Sbjct:   274 VPTIEGRTIPMTVNEVVKPGMRRRIIGYGLPFPKNP 309

GO:0006457 "protein folding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3MI00	DNJB1_BOVIN	No assigned EC number	0.4012	0.9492	0.8794	yes	no
Q9UDY4	DNJB4_HUMAN	No assigned EC number	0.4069	0.9587	0.8961	yes	no
Q9D832	DNJB4_MOUSE	No assigned EC number	0.4132	0.9587	0.8961	yes	no
Q5R8J8	DNJB4_PONAB	No assigned EC number	0.4037	0.9587	0.8961	yes	no
P25294	SIS1_YEAST	No assigned EC number	0.3033	0.9269	0.8295	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	315
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	1e-56
cd10747	158	cd10747, DnaJ_C, C-terminal substrate binding doma	7e-40
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	5e-35
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	6e-35
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	1e-34
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	1e-33
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	1e-31
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	6e-31
pfam00226	63	pfam00226, DnaJ, DnaJ domain	1e-29
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	1e-27
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	1e-27
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	1e-27
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	2e-25
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	3e-25
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	3e-25
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	5e-25
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	8e-25
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	2e-24
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	3e-24
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	4e-24
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	7e-24
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	1e-23
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	1e-23
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	3e-23
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	6e-23
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	5e-22
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	7e-22
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	8e-22
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	1e-21
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	2e-21
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	4e-20
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	5e-20
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	2e-19
PRK14288	369	PRK14288, PRK14288, chaperone protein DnaJ; Provis	1e-18
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	5e-18
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	7e-18
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	7e-16
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	1e-15
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	8e-15
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	8e-14
pfam01556	81	pfam01556, DnaJ_C, DnaJ C terminal domain	3e-13
COG5407	610	COG5407, SEC63, Preprotein translocase subunit Sec	1e-12
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	9e-10
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	1e-09
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	4e-09
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	9e-08
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	1e-07
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	2e-07
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	2e-07
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	9e-07
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	1e-05
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	1e-05
COG5269	379	COG5269, ZUO1, Ribosome-associated chaperone zuoti	2e-04
PRK09430	267	PRK09430, djlA, Dna-J like membrane chaperone prot	3e-04
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	4e-04
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	6e-04
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	0.001
PHA03102	153	PHA03102, PHA03102, Small T antigen; Reviewed	0.001
PHA02624	647	PHA02624, PHA02624, large T antigen; Provisional	0.003

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score =  187 bits (476), Expect = 1e-56
 Identities = 108/372 (29%), Positives = 150/372 (40%), Gaps = 121/372 (32%)

Query: 4   DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
           DYY IL V+++A+E+++KKAY++LA  +HPD+NP  K  EAE KFK+I+EAY+VLSDP+K
Sbjct: 5   DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDK--EAEEKFKEINEAYEVLSDPEK 62

Query: 64  RQIYDLYGEEGLKSGTVPTSSTSTSASRAGQHYYHQRQHPNPSFRFNP--RDAEDIYEEL 121
           R  YD +G  G K+G              G             F F     D  DI+E+ 
Sbjct: 63  RAAYDQFGHAGFKAG--------------GFG----------GFGFGGFGGDFGDIFEDF 98

Query: 122 FGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTASGGAAEFKKAPAVENLLPCSLE 181
           FG       GG+R  N   RG   R                             L  +LE
Sbjct: 99  FG----GGGGGRRRPNRPRRGADLRY---------------------------NLEITLE 127

Query: 182 EIYKGAKKKMRISRNVY---------------------DSVGKTRTVEEILTV------- 213
           E   G KK++R++R+V                      +  G+ RTV+            
Sbjct: 128 EAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCP 187

Query: 214 -------EIK-----------------------PGWKKGTKITFPEKGNQ-EPGIIAADL 242
                   IK                        G   G +I    +G     G  A DL
Sbjct: 188 TCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLSGEGEAGPNGGPAGDL 247

Query: 243 IFIVDEKPHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGR-NLMIPLTDIVKPGTE 301
              V  KPH ++ RDG+DL     I+  EA  G  +++ TLDGR  L IP     + G  
Sbjct: 248 YVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGRVKLKIPAG--TQTGEV 305

Query: 302 IVVPNEGMPISK 313
             +  +GMP  +
Sbjct: 306 FRLRGKGMPKLR 317

Length = 371

>gnl|CDD|199909 cd10747, DnaJ_C, C-terminal substrate binding domain of DnaJ and HSP40

 Score =  136 bits (346), Expect = 7e-40
 Identities = 46/139 (33%), Positives = 74/139 (53%), Gaps = 7/139 (5%)

Query: 176 LPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEP 235
           L  +LEE Y G +K+++I R V          ++ LTV+I  G   G ++    +G+  P
Sbjct: 7   LELTLEEAYFGKEKEIKIPRKV-----TRVREKKTLTVKIPAGVDDGQRLRLRGEGDAGP 61

Query: 236 -GIIAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTD 294
            G    DL  ++  KPH ++RRDGNDL     I+L EAL G  +++ TL G  + + +  
Sbjct: 62  NGGPPGDLYVVIRVKPHPVFRRDGNDLYCEVPISLTEALLGGEIEVPTLGG-KVKLKIPP 120

Query: 295 IVKPGTEIVVPNEGMPISK 313
             +PGT + +  +GMP  +
Sbjct: 121 GTQPGTVLRLKGKGMPRLR 139

The C-terminal region of the DnaJ/Hsp40 protein mediates oligomerization and binding to denatured polypeptide substrate. DnaJ/Hsp40 is a widely conserved heat-shock protein. It prevents the aggregation of unfolded substrate and forms a ternary complex with both substrate and DnaK/Hsp70; the N-terminal J-domain of DnaJ/Hsp40 stimulates the ATPase activity of DnaK/Hsp70. Length = 158

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score =  129 bits (327), Expect = 5e-35
 Identities = 60/194 (30%), Positives = 85/194 (43%), Gaps = 50/194 (25%)

Query: 4   DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
           DYY IL V+++A+E+++KKAY++LA  +HPD+N      EAE KFK+I+EAY+VLSDP+K
Sbjct: 1   DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD---KEAEEKFKEINEAYEVLSDPEK 57

Query: 64  RQIYDLYGEEGLKSGTVPTSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEELFG 123
           R  YD +G  G   G              G  +       N        D  DI+ + FG
Sbjct: 58  RAQYDQFGHAGFNGG----------GGGGGGGF-------NGFDIGFFGDFGDIFGDFFG 100

Query: 124 SESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTASGGAAEFKKAPAVENLLPCSLEEI 183
                   G+R  +   RG   R  L                         L   + EE 
Sbjct: 101 ---GGGGSGRRRRSGPRRGEDLRYDL------------------------EL---TFEEA 130

Query: 184 YKGAKKKMRISRNV 197
             G +K++ I R  
Sbjct: 131 VFGVEKEIEIPRKE 144

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score =  129 bits (328), Expect = 6e-35
 Identities = 46/75 (61%), Positives = 58/75 (77%), Gaps = 2/75 (2%)

Query: 4  DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
          DYY +L V+RNA+ED++KKAY++LAM +HPD+NP  K  EAE KFK+I EAY+VLSDPQK
Sbjct: 5  DYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDK--EAEEKFKEIKEAYEVLSDPQK 62

Query: 64 RQIYDLYGEEGLKSG 78
          R  YD YG    + G
Sbjct: 63 RAAYDQYGHAAFEQG 77

Length = 371

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score =  127 bits (320), Expect = 1e-34
 Identities = 92/283 (32%), Positives = 130/283 (45%), Gaps = 61/283 (21%)

Query: 4   DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
           DYY IL V +NA++D++KKA+K+LA  +HPD N   K   AE KFK+I+EAY VLSDP+K
Sbjct: 5   DYYAILGVPKNASQDEIKKAFKKLARKYHPDVN---KSPGAEEKFKEINEAYTVLSDPEK 61

Query: 64  RQIYDLYGEEGLKSG-TVPTSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEELF 122
           R+IYD YG     +G   P          +G               FN  D  D +++LF
Sbjct: 62  RRIYDTYGTTAASAGWQGPPPGPPGGGDFSG---------------FNVGDFSDFFQQLF 106

Query: 123 GSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTASGGAAEFKKAPAVENLLPCSLEE 182
           G                      R G    G+   +    A   +K   +E  LP +LEE
Sbjct: 107 GG---------------------RGGFGGFGDLFGSVGRRA---RKGRDLEAELPLTLEE 142

Query: 183 IYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPGIIAADL 242
            Y+G +K +         V   R     L+V I PG ++G  I    KG Q       DL
Sbjct: 143 AYRGGEKVV--------EVAGER-----LSVRIPPGVREGQVIRLAGKGRQ-----GGDL 184

Query: 243 IFIVDEKPHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDG 285
             +V   PH ++R +G+DL    ++    A+ G  + + TLDG
Sbjct: 185 YLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVMTLDG 227

Length = 291

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score =  126 bits (319), Expect = 1e-33
 Identities = 104/370 (28%), Positives = 165/370 (44%), Gaps = 96/370 (25%)

Query: 1   MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSD 60
           M  DYY +L V+R+A++D++KKAY++LA+ +HPDKNP +K  EAE  FK+++EAY+VLS+
Sbjct: 1   MKRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNK--EAEEHFKEVNEAYEVLSN 58

Query: 61  PQKRQIYDLYGEEGLKSGTVPTSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEE 120
             KR+ YD +G  G+ S          SA+  G           P +     D  DI   
Sbjct: 59  DDKRRRYDQFGHAGVGS----------SAASGGG----------PGYGGGGGDFNDI--- 95

Query: 121 LFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTASGGAAEFKKAPAVENLLPCSL 180
            F + ++   GG R    +  G+   E +F  G     AS G         ++  L  +L
Sbjct: 96  -FSAFNDMFGGGARRGGGSPFGF---EDVFGGGGRRRRASAGI----PGTDLKIRLKLTL 147

Query: 181 EEIYKGAKKKMRISRNVYDSV--------------------------------------- 201
           EEI KG +K ++I + V                                           
Sbjct: 148 EEIAKGVEKTLKIKKQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITA 207

Query: 202 -----GKTRTVEEILTVEIKPGWKKG---TKITFPE------------KGNQEP-GIIAA 240
                G+ R V++        G K+G    K+T P             +GN  P G    
Sbjct: 208 CPTCGGEGRVVKDRCPACYGEGIKQGEVTVKVTVPAGVQDGNYLTLRGQGNAGPRGGAPG 267

Query: 241 DLIFIVDEKPHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGR-NLMIPLTDIVKPG 299
           DLI +++EKPH L+ R+G+D++    ++  + + G  +++ TLDG   L IP     +P 
Sbjct: 268 DLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGAVKLTIPAG--TQPE 325

Query: 300 TEIVVPNEGM 309
           T + +P +G+
Sbjct: 326 TMLRIPGKGI 335

Length = 397

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score =  121 bits (305), Expect = 1e-31
 Identities = 104/353 (29%), Positives = 154/353 (43%), Gaps = 75/353 (21%)

Query: 4   DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
           DYY IL V+RNA E+++KKAY+RLA  +HPD NP  K  EAE KFK+I+EAY++LSDPQK
Sbjct: 6   DYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDK--EAEQKFKEINEAYEILSDPQK 63

Query: 64  RQIYDLYGEEGLKSGTVPTSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEELFG 123
           R  YD +G      G              GQ  + Q       F F+     DI+E++FG
Sbjct: 64  RAQYDQFGHAAFDPGG------------FGQGGFGQGGFGGGGFDFDFGGFGDIFEDIFG 111

Query: 124 -----SESNNNSGGQRGNNHNIR---GYSHREGLF---------RNGNCSSTASGGAAEF 166
                      +G Q+G   +IR     +  E  F         R   C      GA   
Sbjct: 112 DFFGTGRRRAETGPQKGA--DIRYDLELTFEEAAFGTEKEIEVERFEKCDVCKGSGA--- 166

Query: 167 KKAPAVENLLPCSLEEIYKGAKKKMRISRNV-YDSVGKTRTVE------EILT------- 212
           K          C           ++R  +N  +  +   RT +      +I+T       
Sbjct: 167 KPGSKPVTCPVC-------HGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCG 219

Query: 213 ------------VEIKPGWKKGTKITFPEKGNQEPGIIA---ADLIFIVDEKPHALYRRD 257
                       V I  G   G  IT   +G  EPGI      DL  ++  KPH L++R+
Sbjct: 220 GTGRIRRRRKIKVNIPAGIDDGQMITL--RGEGEPGIKGGPNGDLYIVIKVKPHPLFKRE 277

Query: 258 GNDLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMP 310
           G ++ +   IT  +A  G  +++ TLDG+ +   + +  + GT+  +  +G+P
Sbjct: 278 GYNVYLEMPITFTDAALGGEIEIPTLDGK-VKFTIPEGTQTGTKFRLRGKGIP 329

Length = 386

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score =  119 bits (299), Expect = 6e-31
 Identities = 97/340 (28%), Positives = 160/340 (47%), Gaps = 58/340 (17%)

Query: 5   YYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKR 64
           YY+IL V+++AN++++K AY++LA+ +HPDKN  +K  E+E KFK+ +EAY++L DP+KR
Sbjct: 6   YYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNK--ESEEKFKEATEAYEILRDPKKR 63

Query: 65  QIYDLYGEEGLKSGTVPTSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEELFGS 124
           Q YD +G+ G+ +G          A   GQ  Y         F     D  DI+ + FG 
Sbjct: 64  QAYDQFGKAGVNAG----------AGGFGQGAY-------TDFSDIFGDFGDIFGDFFGG 106

Query: 125 ESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTASGGAAEFK-KAPAVENLLPCSLEEI 183
                SGG R +    RG   R  L      S   +    E+K + P +E+ + C+    
Sbjct: 107 GRGGGSGGGRRSGPQ-RGSDLRYNL----EVSLEDAALGREYKIEIPRLESCVDCNGSGA 161

Query: 184 YKGA------------------------------KKKMRISRNVYDSVGKTRTVEEILTV 213
            KG+                              + K  +  N   + G     E+  T+
Sbjct: 162 SKGSSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTI 221

Query: 214 EIK--PGWKKGTKITFPEKGNQEP-GIIAADLIFIVDEKPHALYRRDGNDLVVGQEITLL 270
            IK  PG + G+++    +G   P G    DL  +   K H L+ R GNDL++ ++I+L 
Sbjct: 222 NIKIPPGVETGSRLKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLA 281

Query: 271 EALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMP 310
           +A+ G  +++ T+DG+   + + +  + G    +   GMP
Sbjct: 282 QAILGAEIEVPTIDGKKAKMKIPEGTESGQVFRLKGHGMP 321

Length = 372

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score =  107 bits (269), Expect = 1e-29
 Identities = 39/65 (60%), Positives = 53/65 (81%), Gaps = 2/65 (3%)

Query: 4  DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
          DYY IL V R+A+++++KKAY++LA+ +HPDKNP      AE KFK+I+EAY+VLSDP+K
Sbjct: 1  DYYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDP--AAEEKFKEINEAYEVLSDPEK 58

Query: 64 RQIYD 68
          R IYD
Sbjct: 59 RAIYD 63

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score =  110 bits (277), Expect = 1e-27
 Identities = 91/333 (27%), Positives = 136/333 (40%), Gaps = 71/333 (21%)

Query: 4   DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
           DYY IL ++++A+ +D+KKAY++LAM +HPDKN   K  +AE KFK+ISEAY VLSD +K
Sbjct: 6   DYYEILGLSKDASVEDIKKAYRKLAMKYHPDKN---KEPDAEEKFKEISEAYAVLSDAEK 62

Query: 64  RQIYDLYGEEGLKSGTVPTSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEELFG 123
           R  YD +G  G+ +                  Y  +       F        DI+E  FG
Sbjct: 63  RAQYDRFGHAGIDN-----------------QYSAEDIFRGADF----GGFGDIFEMFFG 101

Query: 124 SESNNNSGGQRGNNHNIRGYSHREGLF--------------------RNGNCSSTASGGA 163
                  GG+RG     RG   R  L+                    R   CS T +   
Sbjct: 102 ------GGGRRGRMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPG 155

Query: 164 AEFKKAPAVE--------------NLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEE 209
              K+ P                   +  +      G  + +     V    GK R   +
Sbjct: 156 TSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKVRKTRK 215

Query: 210 ILTVEIKPGWKKGTKITFPEKGNQ-EPGIIAADLIFIVDEKPHALYRRDGNDLVVGQEIT 268
           I TV +  G   G ++    +G    PG  + DL  ++  K H  + R G+D++    I+
Sbjct: 216 I-TVNVPAGADSGLRLKLSGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPIS 274

Query: 269 LLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTE 301
             +A  G  + + TL G+  M      + PGT+
Sbjct: 275 FTQAALGADIMVPTLYGKVKM-----NIPPGTQ 302

Length = 377

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score =  110 bits (276), Expect = 1e-27
 Identities = 97/346 (28%), Positives = 146/346 (42%), Gaps = 62/346 (17%)

Query: 1   MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSD 60
           M  DYY IL V+RNA+++D+KKA++ LA  WHPD +P +K  EAE KFK+ISEAY+VLSD
Sbjct: 1   MAKDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKA-EAEEKFKEISEAYEVLSD 59

Query: 61  PQKRQIYDLYGEEGLKSGTVPTSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEE 120
           PQKR+ YD       ++GTV   +  ++ +    ++ H              D  DI+ +
Sbjct: 60  PQKRRQYD-------QTGTVDFGAGGSNFN--WDNFTHF------------SDINDIFNQ 98

Query: 121 LFGSESNNNSGGQRGNNHNIR-------------------GYSHREGLFRNGNCSSTASG 161
           +FG    ++     GN  + R                   G   R    RN  C    SG
Sbjct: 99  IFGGNFGSDFFSGFGNQQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPD-CSG 157

Query: 162 GAAEFKKAPAVENLLPCSLEEIYKG--------------AKKKMRISRNVYDSVGKTRTV 207
             A+  K            + I +G                 + RI          T TV
Sbjct: 158 TGAKNGKLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTV 217

Query: 208 --EEILTVEIKPGWKKGTKITFPEKGNQEPGIIAADLIFIVDEKPHALYRRDGNDLVVGQ 265
              E ++V+I  G     ++    KG    G    DL  ++        +R  +DL V Q
Sbjct: 218 VVNEDISVKIPKGATDNLRLRVKGKGQSYGG-RTGDLYVVLRVNNDPNIQRINDDLYVDQ 276

Query: 266 EITLLEALTGKTLDLTTLDGR-NLMIPLTDIVKPGTEIVVPNEGMP 310
           +I   +A  G  +++     + NL IP  +  +PG  + +   GMP
Sbjct: 277 KINFPQAALGGEIEIKLFREKYNLKIP--EGTQPGEVLKIKGAGMP 320

Length = 365

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score =  110 bits (276), Expect = 1e-27
 Identities = 44/72 (61%), Positives = 58/72 (80%), Gaps = 2/72 (2%)

Query: 4  DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
          DYY IL V R+A+E+++KK+Y++LAM +HPD+NP  K  EAE  FK+ +EAY+VLSDP+K
Sbjct: 5  DYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDK--EAEELFKEAAEAYEVLSDPKK 62

Query: 64 RQIYDLYGEEGL 75
          R IYD YG EGL
Sbjct: 63 RGIYDQYGHEGL 74

Length = 366

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score =  104 bits (260), Expect = 2e-25
 Identities = 89/326 (27%), Positives = 136/326 (41%), Gaps = 76/326 (23%)

Query: 4   DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
           DYY +L + + A++D++KKA+++LA+ +HPDKN  +K  EAE KFK+I+EAY VLSDPQK
Sbjct: 5   DYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNK--EAEEKFKEINEAYQVLSDPQK 62

Query: 64  RQIYDLYGEEGLKSGTVPTSSTSTSASRAGQHYYHQRQHPNPSFRFNPR-DAEDIYEELF 122
           +  YD +G            +    +   G             F F+      DI++  F
Sbjct: 63  KAQYDQFGT------ADFNGAGGFGSGGFG------------GFDFSDMGGFGDIFDSFF 104

Query: 123 G----SESNNNSGGQRGNNHNIR-GYSHREGLF---------RNGNCSSTASGGAAEFKK 168
           G    S S   +G QRG +       +  E +F         RN NC +    GA   K 
Sbjct: 105 GGGFGSSSRRRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGA---KP 161

Query: 169 APAVENLLPCSLEEIYKGAKKKMRISRNV----------YDSVGKTRTVEE--------- 209
             + +    C       G   ++R+ RN            D  G +  V E         
Sbjct: 162 GTSPKTCDKC-------GGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGK 214

Query: 210 -------ILTVEIKPGWKKGTKITFPEKGNQEPGI---IAADLIFIVDEKPHALYRRDGN 259
                   + V +  G   G  I  P +G  E G       DL   +   PH  ++R G 
Sbjct: 215 GKVRKNRKIKVNVPAGVDTGNVI--PLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGF 272

Query: 260 DLVVGQEITLLEALTGKTLDLTTLDG 285
           D+ + + I+  +A  G  + + T+DG
Sbjct: 273 DIYIDKHISFAKAALGTEIKVPTVDG 298

Length = 380

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score =  103 bits (259), Expect = 3e-25
 Identities = 93/346 (26%), Positives = 134/346 (38%), Gaps = 75/346 (21%)

Query: 4   DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
           DYY +L V+R A+ D++K AY++LA+ +HPD+N       A  KF QI+EAY VLSD +K
Sbjct: 3   DYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKG---AAEKFAQINEAYAVLSDAEK 59

Query: 64  RQIYDLYGEEGLKSGTVPTSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEELFG 123
           R  YD +G             T+  A   G             F     D  DI+E+LFG
Sbjct: 60  RAHYDRFG-------------TAPGAGMPG----------GDPFGGMGFDPMDIFEQLFG 96

Query: 124 SESNNNSGG----QRGNN----------------------------HNIRGYSHREGLFR 151
                   G     RG++                             +  G     G   
Sbjct: 97  GAGFGGGRGRRGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKP 156

Query: 152 NGNCSSTASGGAAEFKKAP---AVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVE 208
              C +    GA   +       VE   PC      +G  + +     V    G+T   E
Sbjct: 157 PKTCPTCRGAGAVRAQARTIFGVVETQQPCP---TCRGEGQIITDPCTVCRGRGRTLKAE 213

Query: 209 EILTVEIKPGWKKGTKITFPEKGNQEPGIIAADLIFIVDEKPHALYRRDGNDLVVGQEIT 268
            +  V++  G  +G +I     GN+ PG    DL   ++ +PH   RR+   L+    I 
Sbjct: 214 TV-KVKLPRGIDEGYRIRVAGMGNEGPGG-NGDLYVHIEMEPHPELRREQEHLIYEARIG 271

Query: 269 LLEALTGKTLDLTTLDGRNLMIPLTDIVKPGT----EIVVPNEGMP 310
             +A  G  + + TLDG     P    VKPGT       +  +GMP
Sbjct: 272 FAKAALGGQITVPTLDG-----PQVIEVKPGTQHGDLHRLRGQGMP 312

Length = 371

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score =  103 bits (259), Expect = 3e-25
 Identities = 50/119 (42%), Positives = 68/119 (57%), Gaps = 21/119 (17%)

Query: 4   DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
           DYY IL V+RNA ++++KKAY+RLA  +HPD N +    EAE KFK+I+EAY VLSDP+K
Sbjct: 4   DYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN---PEAEEKFKEINEAYQVLSDPEK 60

Query: 64  RQIYDLYGEEGLKSGTVPTSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEELF 122
           R++YD +G                  S +GQ    Q         F   + EDI E++F
Sbjct: 61  RKLYDQFGHAAF--------------SGSGQQQQGQ----EGFSDFGGGNIEDILEDVF 101

Length = 382

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score =  102 bits (256), Expect = 5e-25
 Identities = 87/339 (25%), Positives = 148/339 (43%), Gaps = 49/339 (14%)

Query: 1   MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSD 60
           M  DYY IL +++ A++D++KKAY+++A+ +HPDKN  +K  EAE+ FK+ +EAY+VL D
Sbjct: 1   MKRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNK--EAESIFKEATEAYEVLID 58

Query: 61  PQKRQIYDLYGEEGLKSGTVPTSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEE 120
             KR  YD +G    + G      +   +                 F     D  DI++ 
Sbjct: 59  DNKRAQYDRFGHTAFEGGGGFEGFSGGFS----------------GFSDIFEDFGDIFDS 102

Query: 121 LF----GSESNNNSGGQRGNNHNIR--------GYSHREGLFRNGNCSSTASGGAAEFKK 168
            F    G + N      +   + I         GY +   + RN  C S   G  +E   
Sbjct: 103 FFTGNRGQDKNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCL-GKKSEKGT 161

Query: 169 APAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTV---------------EEILTV 213
           +P++ N+   S   +  G     R++       G  + +               +E + +
Sbjct: 162 SPSICNMCNGSGRVMQGGG--FFRVTTTCPKCYGNGKIISNPCKSCKGKGSLKKKETIEL 219

Query: 214 EIKPGWKKGTKITFPEKGNQEP-GIIAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEA 272
           +I  G     +I    KG+  P      DL   +  KPH +++R+G DL     I+  +A
Sbjct: 220 KIPAGIDDNQQIKMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQA 279

Query: 273 LTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPI 311
             GK + + T+  + + I +    +   +I++ NEGMPI
Sbjct: 280 ALGKEIKIQTIASKKIKIKIPKGTENDEQIIIKNEGMPI 318

Length = 365

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score =  102 bits (256), Expect = 8e-25
 Identities = 41/75 (54%), Positives = 59/75 (78%), Gaps = 2/75 (2%)

Query: 4  DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
          DYY IL V++ A+ +++KKAY++LA+ +HPDKNP     EAE +FK++SEAY+VLSD QK
Sbjct: 2  DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGD--AEAEKRFKEVSEAYEVLSDAQK 59

Query: 64 RQIYDLYGEEGLKSG 78
          R+ YD YG++G  +G
Sbjct: 60 RESYDRYGKDGPFAG 74

Length = 391

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score =  101 bits (253), Expect = 2e-24
 Identities = 44/87 (50%), Positives = 60/87 (68%), Gaps = 5/87 (5%)

Query: 4  DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
          DYY IL V+RNA ++++K+AYKRL   WHPD++P +++ EAE KFK+I EAY+VLSDPQK
Sbjct: 5  DYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRK-EAEQKFKEIQEAYEVLSDPQK 63

Query: 64 RQIYDLYGEEGLKSGTVPTSSTSTSAS 90
          R +YD +G      G  P    + S  
Sbjct: 64 RAMYDRFG----YVGEQPPYQETESGG 86

Length = 369

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 92.7 bits (231), Expect = 3e-24
 Identities = 38/60 (63%), Positives = 50/60 (83%), Gaps = 1/60 (1%)

Query: 4  DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
          DYY IL V R+A+ D++KKAY++LA+ +HPDKNP  K  EAE KFK+I+EAY+VLSDP+K
Sbjct: 2  DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKE-EAEEKFKEINEAYEVLSDPEK 60

Length = 60

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score =  100 bits (251), Expect = 4e-24
 Identities = 39/72 (54%), Positives = 54/72 (75%), Gaps = 3/72 (4%)

Query: 1  MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSD 60
          M  DYY +L V+RNA++ ++K+AY++LA   HPD NP     EA+ KFK+IS AY+VLSD
Sbjct: 1  MARDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDE---EAQEKFKEISVAYEVLSD 57

Query: 61 PQKRQIYDLYGE 72
          P+KR+I DL G+
Sbjct: 58 PEKRRIVDLGGD 69

Length = 378

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 97.2 bits (241), Expect = 7e-24
 Identities = 63/260 (24%), Positives = 97/260 (37%), Gaps = 37/260 (14%)

Query: 3   FDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQ 62
            DYY IL V  NA+ +++KKAY++LA+ +HPD+NP      AE KFK+I+EAY++LSDP+
Sbjct: 6   LDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNP-GDPKVAEEKFKEINEAYEILSDPE 64

Query: 63  KRQIYDLYGEEGLKSGTVPTSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEELF 122
           +R  YD  G +    G                +          S          +YEE  
Sbjct: 65  RRAEYDKIGADNYFPGK--------------SYRESAAFPIEGS-----LQLTGLYEEWR 105

Query: 123 GSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTASGGAAEFKKAPAVENLLPCSLEE 182
           G  +          +   RG S   GL    +  +  +   +   +   +   L  + EE
Sbjct: 106 GKRNKTERKASL-ADLLSRGLS---GLAAALSLFADEAALRSGSLRRRDLAANLADNFEE 161

Query: 183 IYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPGIIAADL 242
              G KK +                 + L   IK G  +G  +          G      
Sbjct: 162 ALAGVKKAVARLL------------GKALKSTIKAGALEGKALRLKGLLKSARG-ALGKA 208

Query: 243 IFIVDEKPHALYRRDGNDLV 262
                 K H  +  +G+D  
Sbjct: 209 RLKELSKRHPPFALEGDDKY 228

Length = 237

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score = 99.9 bits (249), Expect = 1e-23
 Identities = 51/117 (43%), Positives = 74/117 (63%), Gaps = 5/117 (4%)

Query: 201 VGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPGIIAADLIFIVDEKPHALYRRDGND 260
           V KTR   +IL V I  G     KITF  + +++P  I  +++FI++EKPH  ++R+G D
Sbjct: 219 VKKTR---KILEVNIDKGVPNQHKITFHGEADEKPNEIPGNVVFILNEKPHDTFKREGGD 275

Query: 261 LVVGQEITLLEALTGKTLDLTTLDGRNLMI--PLTDIVKPGTEIVVPNEGMPISKEP 315
           L + ++I+L EALTG    +T LDGR L++  P  ++VKPG   V+ NEGMP  K P
Sbjct: 276 LFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVKPGDIKVINNEGMPTYKSP 332

Length = 421

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 98.4 bits (245), Expect = 1e-23
 Identities = 78/293 (26%), Positives = 117/293 (39%), Gaps = 60/293 (20%)

Query: 4   DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
           DYY I+ V    +   +K AY+RLA  +HPD +   K  +AEA+FK+++EA++VLSD Q+
Sbjct: 5   DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVS---KEPDAEARFKEVAEAWEVLSDEQR 61

Query: 64  RQIYDLYGEEGLKSGTVPTSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEELFG 123
           R  YD                      R    +  Q QH      FN  D +DI+  +FG
Sbjct: 62  RAEYD-----------------QLWQHRNDPQFNRQFQH-GDGQSFNAEDFDDIFSSIFG 103

Query: 124 SESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTASGGAAEFKKAPAVENLLPCSLEEI 183
                    Q       RG+                            +E  +   LEE 
Sbjct: 104 QH-----ARQSRQRPAARGHD---------------------------IEIEVAVFLEET 131

Query: 184 YKGAKKKMRISRNVYDSVGK-TRTVEEILTVEIKPGWKKGTKITFPEKGNQEPGIIAA-- 240
               K+ +  +  VY++ G   + + + L V+I  G   G +I    KG   PG      
Sbjct: 132 LTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRL--KGQGTPGENGGPN 189

Query: 241 -DLIFIVDEKPHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLM-IP 291
            DL  ++   PH L+   G DL +   +   EA  G  + + TL    L+ IP
Sbjct: 190 GDLWLVIHIAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTVPTLKESILLTIP 242

Length = 306

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score = 98.1 bits (245), Expect = 3e-23
 Identities = 40/78 (51%), Positives = 55/78 (70%), Gaps = 3/78 (3%)

Query: 1  MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSD 60
          M  DYY IL V+R+A++D+LK+AY+RLA  +HPD N   K   AE +FK+I+ AY+VLSD
Sbjct: 1  MAADYYEILGVSRDADKDELKRAYRRLARKYHPDVN---KEPGAEDRFKEINRAYEVLSD 57

Query: 61 PQKRQIYDLYGEEGLKSG 78
          P+ R  YD +GE G+   
Sbjct: 58 PETRARYDQFGEAGVSGA 75

Length = 374

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 97.1 bits (242), Expect = 6e-23
 Identities = 38/72 (52%), Positives = 56/72 (77%), Gaps = 2/72 (2%)

Query: 4  DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
          DYY +L V+R+A+ED++KKAY++LA+ +HPD+NP +   EAE KFK+ +EAY+VL D +K
Sbjct: 5  DYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNP--EAEQKFKEAAEAYEVLRDAEK 62

Query: 64 RQIYDLYGEEGL 75
          R  YD +G  G+
Sbjct: 63 RARYDRFGHAGV 74

Length = 373

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score = 94.9 bits (236), Expect = 5e-22
 Identities = 40/72 (55%), Positives = 53/72 (73%), Gaps = 2/72 (2%)

Query: 4  DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
          DYY +L V++ A  D++KKAY++ A+ +HPDKNP  K  EAE KFK+ +EAYDVLSDP K
Sbjct: 6  DYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDK--EAEEKFKEAAEAYDVLSDPDK 63

Query: 64 RQIYDLYGEEGL 75
          R  YD +G  G+
Sbjct: 64 RSRYDQFGHAGV 75

Length = 386

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score = 94.4 bits (235), Expect = 7e-22
 Identities = 36/75 (48%), Positives = 53/75 (70%), Gaps = 3/75 (4%)

Query: 4  DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
          +YY+ L V+++A++D++KKAY++L+  +HPD N   K   AE K+K++ EAY+ LSDPQK
Sbjct: 5  EYYDRLGVSKDASQDEIKKAYRKLSKKYHPDIN---KEPGAEEKYKEVQEAYETLSDPQK 61

Query: 64 RQIYDLYGEEGLKSG 78
          R  YD YG  G   G
Sbjct: 62 RAAYDQYGAAGANGG 76

Length = 380

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 86.4 bits (215), Expect = 8e-22
 Identities = 33/57 (57%), Positives = 47/57 (82%), Gaps = 2/57 (3%)

Query: 4  DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSD 60
          DYY+IL V  +A+++++KKAY++LA+ +HPDKNP     EAE KFK+I+EAY+VLSD
Sbjct: 1  DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDP--EAEEKFKEINEAYEVLSD 55

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score = 94.1 bits (234), Expect = 1e-21
 Identities = 57/193 (29%), Positives = 89/193 (46%), Gaps = 71/193 (36%)

Query: 5   YYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKR 64
            Y +L ++++    ++KKAY++LA+  HPDK    +      KFK+IS AY+VLSDP+KR
Sbjct: 30  LYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPE------KFKEISRAYEVLSDPEKR 83

Query: 65  QIYDLYGEEGLKSGTVPTSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEELFGS 124
           +IYD YGEEGL+ G  P                               DA D+++ +FG 
Sbjct: 84  KIYDEYGEEGLEGGEQPA------------------------------DASDLFDLIFG- 112

Query: 125 ESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTASGGAAEFKKAPAVENLLPCSLEEIY 184
                 GG++                          GG    K+   + + L  +LE+IY
Sbjct: 113 ------GGRK-------------------------PGGK---KRGEDIVSHLKVTLEQIY 138

Query: 185 KGAKKKMRISRNV 197
            GA +K+ I+++V
Sbjct: 139 NGAMRKLAINKDV 151

Length = 421

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score = 93.1 bits (231), Expect = 2e-21
 Identities = 88/323 (27%), Positives = 144/323 (44%), Gaps = 31/323 (9%)

Query: 4   DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
           DYY +L V+RNA+ D++KKAY++LA  +HPD N   K  +AE KFK++ EAYD LSDPQK
Sbjct: 5   DYYEVLGVDRNASVDEVKKAYRKLARKYHPDVN---KAPDAEDKFKEVKEAYDTLSDPQK 61

Query: 64  RQIYDLYGEEGLKSGTVPTSSTSTSA-SRAGQHYY---HQRQHPNPSFRFNPRDAEDIY- 118
           +  YD +G      G     +      S     ++     R++PN      PR   D+  
Sbjct: 62  KAHYDQFGHTDPNQGFGGGGAGDFGGFSDIFDMFFGGGGGRRNPNA-----PRQGADLQY 116

Query: 119 -------EELFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTASGGAAEFKKAPA 171
                  E +FG E+      +        G   + G  +   CS     G    ++   
Sbjct: 117 TMTLEFKEAVFGKETEIEIPREE-TCGTCHGSGAKPGT-KPETCSHCGGSGQLNVEQNTP 174

Query: 172 VENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKG 231
              ++   +    +G  K ++         GK R  ++I  V++  G   G ++    +G
Sbjct: 175 FGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRKRKKI-NVKVPAGIDHGQQLRVSGQG 233

Query: 232 NQEPGI---IAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGR-N 287
             E G+      DL  + + KPH  + RDG+D+     +T  +   G  +++ TL+G+  
Sbjct: 234 --EAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGKVK 291

Query: 288 LMIPLTDIVKPGTEIVVPNEGMP 310
           L IP     + GT   +  +G+P
Sbjct: 292 LKIPAG--TQTGTSFRLRGKGVP 312

Length = 371

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score = 89.5 bits (222), Expect = 4e-20
 Identities = 38/72 (52%), Positives = 53/72 (73%), Gaps = 3/72 (4%)

Query: 4  DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
          DYY +L V+RNA++ ++KKAY++LA  +HPD +   +   AE KFK+ISEAY VLSD +K
Sbjct: 6  DYYEVLGVDRNADKKEIKKAYRKLARKYHPDVS---EEEGAEEKFKEISEAYAVLSDDEK 62

Query: 64 RQIYDLYGEEGL 75
          RQ YD +G  G+
Sbjct: 63 RQRYDQFGHAGM 74

Length = 378

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 89.0 bits (221), Expect = 5e-20
 Identities = 38/75 (50%), Positives = 54/75 (72%), Gaps = 3/75 (4%)

Query: 4  DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
          DYY +L V+++A++D++KKAY++L+  +HPD N   K   A+ KFK+ISEAY+VLSD QK
Sbjct: 5  DYYEVLGVSKSASKDEIKKAYRKLSKKYHPDIN---KEEGADEKFKEISEAYEVLSDDQK 61

Query: 64 RQIYDLYGEEGLKSG 78
          R  YD +G  G   G
Sbjct: 62 RAQYDQFGHAGPNQG 76

Length = 376

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score = 87.4 bits (216), Expect = 2e-19
 Identities = 88/343 (25%), Positives = 146/343 (42%), Gaps = 62/343 (18%)

Query: 1   MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSD 60
           M  DYY IL V++ A++ DLKKAY +LA  +HPD   +    +AE KFK+I+ AYDVL D
Sbjct: 1   MSQDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAK---DAEKKFKEINAAYDVLKD 57

Query: 61  PQKRQIYDLYGEEGLKSGTVPTSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEE 120
            QKR  YD +G +  ++        +                      F+P D  DI+ +
Sbjct: 58  EQKRAAYDRFGHDAFQNQQSRGGGGNHGG-------------------FHP-DINDIFGD 97

Query: 121 LFGSESNNNSGGQRGNNHNIRGYSHR-----------EGLFRNGNCSS-----TASGGAA 164
            F S+    S   R  +  +RG   +            G+ +N + SS     T  G  +
Sbjct: 98  FF-SDFMGGSRRSRPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGS 156

Query: 165 EFKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTV---------------EE 209
           E  K   V     CS     +  +    I +  +   G  + +               + 
Sbjct: 157 E--KGETVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQR 214

Query: 210 ILTVEIKPGWKKGTKITFPEKGNQEPGII---AADLIFIVDEKPHALYRRDGNDLVVGQE 266
            L+V I  G + GT+I    +G  E GI    + DL   +  KPH +Y+ DG +L     
Sbjct: 215 NLSVNIPAGVENGTRIRHTGEG--EAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLP 272

Query: 267 ITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGM 309
           I+ + A  G  +++  ++G  + + +    + G ++ + ++GM
Sbjct: 273 ISFVNAALGGEIEVPVIEGGKVNLTIPAGTQNGDQLRLRSKGM 315

Length = 372

>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional

 Score = 84.7 bits (209), Expect = 1e-18
 Identities = 86/338 (25%), Positives = 139/338 (41%), Gaps = 59/338 (17%)

Query: 1   MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSD 60
           M   YY IL+V +++N++ +KK+Y++LA+ +HPD+N   K  EAE KFK I+EAY VLSD
Sbjct: 1   MELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDK--EAEEKFKLINEAYGVLSD 58

Query: 61  PQKRQIYDLYGEEGLKSGTVPTSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAE----- 115
            +KR +YD YG++GL       S  S      G  +         +F F  R ++     
Sbjct: 59  EKKRALYDRYGKKGLNQAGASQSDFSDFFEDLGSFF-------EDAFGFGARGSKRQKSS 111

Query: 116 -----------DIYEELFG------------SESNNNSGGQRGNNHNIRGYSHREGLF-R 151
                         E +FG             ES + +G +       +  + +  +F R
Sbjct: 112 IAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDKALETCKQCNGQGQVFMR 171

Query: 152 NGNCSSTASGGAAEFKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEIL 211
            G  S   + GA +  K   ++   PC      +  K K  I ++           EEI 
Sbjct: 172 QGFMSFAQTCGACQ-GKGKIIKT--PC------QACKGKTYILKD-----------EEID 211

Query: 212 TVEIKPGWKKGTKITFPEKGNQEPGIIAADLIFIVDEKPHALYRRDGNDLVVGQEITLLE 271
            + I  G     ++    KGN+       DL      K    ++R+G DL +   +    
Sbjct: 212 AI-IPEGIDDQNRMVLKNKGNEYEKGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTT 270

Query: 272 ALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGM 309
              G T+ + +L G  L + +    +        NEG+
Sbjct: 271 IALGHTIKVPSLKGDELELKIPRNARDRQTFAFRNEGV 308

Length = 369

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score = 83.4 bits (206), Expect = 5e-18
 Identities = 39/79 (49%), Positives = 54/79 (68%), Gaps = 6/79 (7%)

Query: 4  DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
          DYY +L V ++A E ++KKAY++LA  +HPD N      +AE +FK+ISEAYDVLSD +K
Sbjct: 10 DYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGD--AKAEERFKEISEAYDVLSDEKK 67

Query: 64 RQIYD----LYGEEGLKSG 78
          R+ YD    L+G  G + G
Sbjct: 68 RKEYDEARSLFGNGGFRPG 86

Length = 389

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score = 82.9 bits (205), Expect = 7e-18
 Identities = 33/65 (50%), Positives = 46/65 (70%), Gaps = 2/65 (3%)

Query: 4  DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
          D+Y  L V+ +A+ +++KKAY++LA   HPD NP      AE +FK +SEA+DVLSDP K
Sbjct: 10 DFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDP--AAEERFKAVSEAHDVLSDPAK 67

Query: 64 RQIYD 68
          R+ YD
Sbjct: 68 RKEYD 72

Length = 392

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 77.9 bits (191), Expect = 7e-16
 Identities = 34/72 (47%), Positives = 54/72 (75%), Gaps = 3/72 (4%)

Query: 4  DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
          DYY +L ++R+A+E ++KKA+++LA  +HPD+N   K  +A + F +I+EA DVLS+P+K
Sbjct: 3  DYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRN---KAPDAASIFAEINEANDVLSNPKK 59

Query: 64 RQIYDLYGEEGL 75
          R  YD YG +G+
Sbjct: 60 RANYDKYGHDGV 71

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 76.3 bits (188), Expect = 1e-15
 Identities = 39/105 (37%), Positives = 57/105 (54%), Gaps = 1/105 (0%)

Query: 207 VEEILTVEIKPGWKKGTKITFPEKGNQ-EPGIIAADLIFIVDEKPHALYRRDGNDLVVGQ 265
            +E + V I PG   G+K+  P KG+    G    DL  IV  KPH L+ R G++L +  
Sbjct: 222 KKETIKVRIPPGVDNGSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDV 281

Query: 266 EITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMP 310
            IT+ EA+ G  L++  LDG+   + +    K G +I VP +GMP
Sbjct: 282 NITVAEAVLGTELEVPLLDGKKEKVKIPPGTKEGDKIRVPGKGMP 326

Length = 382

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score = 73.8 bits (181), Expect = 8e-15
 Identities = 78/340 (22%), Positives = 140/340 (41%), Gaps = 55/340 (16%)

Query: 4   DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
           DYY +L V++ A+E ++++AY++LA  +HPD N   K  +A  K  +I+EA DVL D  K
Sbjct: 5   DYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLN---KSPDAHDKMVEINEAADVLLDKDK 61

Query: 64  RQIYDLYGEEGLKSGTVPTSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEELFG 123
           R+ YD +G            S+  S++             +    F      +I+ + FG
Sbjct: 62  RKQYDQFGHAAFD------GSSGFSSNFGDFEDLFSNMGSSGFSSFT-----NIFSDFFG 110

Query: 124 SESNNNSGGQRGNNHNIRGY-SHREGLFRNG---------NCSSTASGGAAEFKKAP--- 170
           S  ++     +G + ++  Y + +E LF            NCS     GA          
Sbjct: 111 SNKSDYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGSGAESNSDIHICN 170

Query: 171 -----------------AVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTV 213
                              +    C    +  GA K ++         GK    ++I  V
Sbjct: 171 NCHGTGEVLVQKNMGFFQFQQSAKC---NVCNGAGKIIKNKCKNCKGKGKYLERKKI-EV 226

Query: 214 EIKPGWKKGTKITFPEKGNQE-PGIIAADL---IFIVDEKPHALYRRDGNDLVVGQEITL 269
            I  G +   +I   +KG+      +  DL   I++ + K   +   + ND+++   I+ 
Sbjct: 227 NIPKGIRPNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEII--NNNDILMTYNISY 284

Query: 270 LEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGM 309
           L+A+ G  + + TLDG ++   L   +     I++ N+G+
Sbjct: 285 LDAILGNEIIIKTLDG-DIKYKLPKSINSNELIIINNKGL 323

Length = 372

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 70.7 bits (174), Expect = 8e-14
 Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 5/115 (4%)

Query: 202 GKTRTVE-EILTVEIKPGWKKGTKITFPEKGNQ-EPGIIAADLIFIVDEKPHALYRRDGN 259
           GK R  E + +TV+I  G   G ++    KGN  E G    DL  ++  KPH ++ RDGN
Sbjct: 208 GKGRVKERKTITVKIPAGVDTGQRLRVSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGN 267

Query: 260 DLVVGQEITLLEALTGKTLDLTTLDGR-NLMIPLTDIVKPGTEIVVPNEGMPISK 313
           DL +   I+  +A+ G  +++ TLDG   L IP     + GT   +  +G+P  +
Sbjct: 268 DLYIEVPISFTQAILGGEIEVPTLDGDVKLKIPAG--TQSGTVFRLKGKGVPRLR 320

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|216569 pfam01556, DnaJ_C, DnaJ C terminal domain

 Score = 63.7 bits (156), Expect = 3e-13
 Identities = 23/56 (41%), Positives = 35/56 (62%)

Query: 260 DLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPISKEP 315
           DL V   I+L EAL G T+++ TLDGR + I +    +PG ++ +  +GMPI+K  
Sbjct: 1   DLYVTLPISLKEALLGGTVEVPTLDGRKVKIKIPAGTQPGDKLRIKGKGMPINKGG 56

This family consists of the C terminal region form the DnaJ protein. Although the function of this region is unknown, it is always found associated with pfam00226 and pfam00684. DnaJ is a chaperone associated with the Hsp70 heat-shock system involved in protein folding and renaturation after stress. Length = 81

>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

 Score = 68.1 bits (166), Expect = 1e-12
 Identities = 33/81 (40%), Positives = 52/81 (64%), Gaps = 3/81 (3%)

Query: 2   GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNP---SHKRTEAEAKFKQISEAYDVL 58
           GFD Y IL ++++ +E D+KK Y+ L+M +HPDK P   +  R+E E K+K I++AY +L
Sbjct: 97  GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLL 156

Query: 59  SDPQKRQIYDLYGEEGLKSGT 79
           +D ++R+ Y  YG       T
Sbjct: 157 TDKKRRENYLNYGTPDSPQHT 177

Length = 610

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 58.7 bits (142), Expect = 9e-10
 Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 1/100 (1%)

Query: 212 TVEIKPGWKKGTKITFPEKGNQE-PGIIAADLIFIVDEKPHALYRRDGNDLVVGQEITLL 270
           TV+I  G + GT +     GN    G    DL  IV  +P   ++R G+DL+    I  L
Sbjct: 228 TVKIPAGVEDGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYL 287

Query: 271 EALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMP 310
           +A+ G T+++   +G   M+ +    +P T   +  +G+P
Sbjct: 288 QAILGTTVEVPLPEGGTTMLKIPPGTQPETVFRLKGKGLP 327

Length = 369

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 2/110 (1%)

Query: 202 GKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPGI-IAADLIFIVDEKPHALYRRDGND 260
           G+ R   EI TV+I  G   G +I    +G   PG   A DL   V E+PH ++ RDG+D
Sbjct: 206 GRVRARREI-TVKIPAGVGDGMRIRLAAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDD 264

Query: 261 LVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMP 310
           L     + +++A  G T+ +  +      I +    +PG+ I +   GMP
Sbjct: 265 LHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPGTQPGSVITLRGRGMP 314

Length = 378

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score = 56.8 bits (137), Expect = 4e-09
 Identities = 31/104 (29%), Positives = 60/104 (57%), Gaps = 2/104 (1%)

Query: 208 EEILTVEIKPGWKKGTKITFPEKGNQEP-GIIAADLIFIVDEKPHALYRRDGNDLVVGQE 266
           EE++TV+I  G  +G +++   KGN    G +  DL+ +++E+PH    RD NDL+    
Sbjct: 226 EEVITVKIPAGVAEGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLL 285

Query: 267 ITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMP 310
           +++  A  G  +++ T+DG+   + +    +PG  + + N+G+P
Sbjct: 286 LSVPTAALGGAVEVPTIDGK-AKVKIEAGTQPGKVLRLRNKGLP 328

Length = 386

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 53.3 bits (127), Expect = 9e-08
 Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 3/72 (4%)

Query: 5   YYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKR 64
           +Y+IL V  NA+  ++ + Y +LA  ++P   P     E   KFK+I+EAY +L D  K+
Sbjct: 575 FYDILGVGVNADMKEISERYFKLAENYYP---PKRSGNEGFHKFKKINEAYQILGDIDKK 631

Query: 65  QIYDLYGEEGLK 76
           ++Y+ +G +G+K
Sbjct: 632 KMYNKFGYDGIK 643

Length = 1136

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 52.1 bits (125), Expect = 1e-07
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 5/111 (4%)

Query: 202 GKTRTVEEILTVEIKPGWKKGTKITFPEKGNQ-EPGIIAADLIFIVDEKPHALYRRDGND 260
           G+ R V + + V+I  G   G+++    +G     G    DL   +  +PH  + RDGND
Sbjct: 207 GRVR-VSKTVQVKIPAGVDTGSRLRLRGEGEAGVRGGPPGDLYVFLTVEPHEFFERDGND 265

Query: 261 LVVGQEITLLEALTGKTLDLTTLDG-RNLMIPLTDIVKPGTEIVVPNEGMP 310
           +     I+ ++A  G  +++ TL+G R L IP     +PG       +G+P
Sbjct: 266 VHCKVPISFVQAALGAQIEVPTLEGERELKIPKG--TQPGDIFRFKGKGIP 314

Length = 366

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 15/117 (12%)

Query: 202 GKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPGII---AADLIFIVDEKPHALYRRDG 258
           G  +   E L V I  G   G+++    +G  EPG+      DL  ++  +   +++R G
Sbjct: 207 GIVQQTRE-LKVRIPAGVDTGSRLRL--RGEGEPGVHGGPPGDLYVVITVEDDKIFQRQG 263

Query: 259 NDLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTE----IVVPNEGMPI 311
            DLVV QEI+ ++A  G  +++ TLD      P+T  +  GT+      +  +G+P 
Sbjct: 264 QDLVVTQEISFVQAALGDRIEVPTLDD-----PVTLDIPKGTQSGEVFRLRGKGLPY 315

Length = 373

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score = 51.4 bits (123), Expect = 2e-07
 Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 5/111 (4%)

Query: 202 GKTRTVEEILTVEIKPGWKKGTKITFPEKGNQ-EPGIIAADLIFIVDEKPHALYRRDGND 260
           G  R  + I +V+I  G + G+++    +G   + G    DL  ++  KPH ++RR+G +
Sbjct: 213 GVVRETKTI-SVKIPAGVETGSRLRVSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGAN 271

Query: 261 LVVGQEITLLEALTGKTLDLTTLDGR-NLMIPLTDIVKPGTEIVVPNEGMP 310
           L   + I+ ++A  G T+D+ T+DG   L IP     + GT   +   GMP
Sbjct: 272 LYYEKPISFVQAALGDTVDVPTIDGPVELKIPAG--TQSGTTFRLKGHGMP 320

Length = 378

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score = 49.7 bits (119), Expect = 9e-07
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 203 KTRTVEEILTVEIKPGWKKGTKITFPEKGNQEP-GIIAADLIFIVDEKPHALYRRDGNDL 261
           +TRT+     V I PG + G +I    +G     G  + DL   V  +P  ++ RDG+DL
Sbjct: 240 RTRTI----NVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDL 295

Query: 262 VVGQEITLLEALTGKTLDLTTLDGR 286
            V   ++  E   G TL + TLDG 
Sbjct: 296 TVTVPVSFTELALGSTLSVPTLDGP 320

Length = 392

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 4/108 (3%)

Query: 205 RTVEEILTVEIKPGWKKGTKITFPEKGNQEP-GIIAADLIFIVDEKPHALYRRDGNDLVV 263
           + V + L + I  G   GT++    +G+    G    DL   +  K    +RRDG +++ 
Sbjct: 212 KQVTKKLKINIPAGVDTGTRLRVSGEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILS 271

Query: 264 GQEITLLEALTGKTLDLTTLDGR-NLMIPLTDIVKPGTEIVVPNEGMP 310
             +I+ L+A+ G TL++ T+DG   L IP     +P T + + N+G+P
Sbjct: 272 EIKISYLQAILGDTLEVDTVDGPVELTIPAG--TQPNTVLTLENKGVP 317

Length = 374

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 9/98 (9%)

Query: 204 TRTVEEILTVEIKPGWKKGTKITFPEKGNQ-EPGIIAADLIFIVDEKPHALYRRDGNDLV 262
           +RT++    V I  G   G +I    KG   E G  A DL  +V   PH ++ R G++L 
Sbjct: 234 SRTMQ----VRIPAGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLT 289

Query: 263 VGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGT 300
           V   +T  EA  G  + + TL G     P+T  + PGT
Sbjct: 290 VTVPVTFPEAALGAEVRVPTLGG----PPVTVKLPPGT 323

Length = 389

>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)

Query: 4   DYYNIL---KVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSD 60
           D Y +L   K    A    + KA+K+    +HPDK  +      +  FK I +A +VL D
Sbjct: 44  DLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGD 103

Query: 61  PQKRQIYD 68
            + R  YD
Sbjct: 104 RKLRLQYD 111

Length = 379

>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional

 Score = 41.3 bits (98), Expect = 3e-04
 Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 5/60 (8%)

Query: 4   DYYNILKVNRNANEDDLKKAYKRLAMIWHPDK-----NPSHKRTEAEAKFKQISEAYDVL 58
           D Y +L V+ + ++ ++K+AY++L    HPDK      P      A+ K ++I  AY+++
Sbjct: 201 DAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELI 260

Length = 267

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score = 41.3 bits (98), Expect = 4e-04
 Identities = 35/97 (36%), Positives = 47/97 (48%), Gaps = 14/97 (14%)

Query: 201 VGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPGIIAA---DL-IFI-VDEKPHALYR 255
           V K +T    L+V+I  G   G +I    +G  E G       DL + I V  K H ++ 
Sbjct: 207 VEKEKT----LSVKIPAGVDTGDRIRLSGEG--EAGERGGPAGDLYVQIHV--KEHPIFE 258

Query: 256 RDGNDLVVGQEITLLEALTGKTLDLTTLDGR-NLMIP 291
           RDGNDL     I+   A  G  +++ TLDGR  L IP
Sbjct: 259 RDGNDLYCEVPISFTTAALGGEIEVPTLDGRVKLKIP 295

Length = 371

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score = 40.6 bits (95), Expect = 6e-04
 Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 2/100 (2%)

Query: 213 VEIKPGWKKGTKITFPEKGNQEP-GIIAADLIFIVDEKPHALYRRDGNDLVVGQEITLLE 271
           V I  G   G ++     G+    G  A DL   +D +PH ++ R G+DL++   I  ++
Sbjct: 231 VHIPAGVDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVD 290

Query: 272 ALTGKTLDLTTL-DGRNLMIPLTDIVKPGTEIVVPNEGMP 310
           A  G   ++ TL       + + + ++ GT + V  +G P
Sbjct: 291 AALGMKKEIPTLLKEGTCRLTIPEGIQSGTILKVRGQGFP 330

Length = 391

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 10/95 (10%)

Query: 201 VGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPGI---IAADLIFIVDEKPHALYRRD 257
           V K + +     V+I  G   G +I    +G  EPG+    A DL  +   +PH  + RD
Sbjct: 212 VRKRKKIN----VKIPAGVDNGQQIRVSGEG--EPGVNGGPAGDLYVVFRVRPHEFFERD 265

Query: 258 GNDLVVGQEITLLEALTGKTLDLTTLDGR-NLMIP 291
           G+D+     +T  +A  G  +++ TL G+  L IP
Sbjct: 266 GDDIYCEMPLTFAQAALGDEIEVPTLHGKVKLKIP 300

Length = 376

>gnl|CDD|222986 PHA03102, PHA03102, Small T antigen; Reviewed

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 9/84 (10%)

Query: 9  LKVNRNA--NEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQI 66
          L + R+A  N   ++KAY R  + +HPDK         E K K+++  Y    +  K  +
Sbjct: 11 LGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD------EEKMKELNTLYKKFRESVKS-L 63

Query: 67 YDLYGEEGLKSGTVPTSSTSTSAS 90
           DL GEE   S      S    A+
Sbjct: 64 RDLDGEEDSSSEEEDVPSGYVGAT 87

Length = 153

>gnl|CDD|222912 PHA02624, PHA02624, large T antigen; Provisional

 Score = 38.8 bits (91), Expect = 0.003
 Identities = 26/124 (20%), Positives = 43/124 (34%), Gaps = 27/124 (21%)

Query: 16  NEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGL 75
           N   ++KAY R    +HPDK         E K K+++  Y  L +     +       G 
Sbjct: 26  NLPLMRKAYLRKCKEYHPDKGGD------EEKMKRLNSLYKKLQE----GVKSARQSFGT 75

Query: 76  KSGT-VPTSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIY--EELFGSESNNNSGG 132
           +  + +PT  T        +              FN +  ED++  EEL  S+  +    
Sbjct: 76  QDSSEIPTYGTPEWEQWWEE--------------FNEKWDEDLFCDEELSSSDDEDEPPP 121

Query: 133 QRGN 136
               
Sbjct: 122 PSPP 125

Length = 647

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	315
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	100.0
PRK14288	369	chaperone protein DnaJ; Provisional	100.0
PRK14296	372	chaperone protein DnaJ; Provisional	100.0
PTZ00037	421	DnaJ_C chaperone protein; Provisional	100.0
PRK14286	372	chaperone protein DnaJ; Provisional	100.0
PRK14285	365	chaperone protein DnaJ; Provisional	100.0
PRK14278	378	chaperone protein DnaJ; Provisional	100.0
PRK14298	377	chaperone protein DnaJ; Provisional	100.0
PRK14287	371	chaperone protein DnaJ; Provisional	100.0
PRK14277	386	chaperone protein DnaJ; Provisional	100.0
PRK14276	380	chaperone protein DnaJ; Provisional	100.0
PRK14279	392	chaperone protein DnaJ; Provisional	100.0
PRK14280	376	chaperone protein DnaJ; Provisional	100.0
PRK14291	382	chaperone protein DnaJ; Provisional	100.0
PRK14295	389	chaperone protein DnaJ; Provisional	100.0
PRK14282	369	chaperone protein DnaJ; Provisional	100.0
PRK14301	373	chaperone protein DnaJ; Provisional	100.0
PRK14284	391	chaperone protein DnaJ; Provisional	100.0
PRK14281	397	chaperone protein DnaJ; Provisional	100.0
PRK14294	366	chaperone protein DnaJ; Provisional	100.0
PRK14297	380	chaperone protein DnaJ; Provisional	100.0
PRK14299	291	chaperone protein DnaJ; Provisional	100.0
PRK10767	371	chaperone protein DnaJ; Provisional	100.0
PRK14290	365	chaperone protein DnaJ; Provisional	100.0
PRK14300	372	chaperone protein DnaJ; Provisional	100.0
PRK10266	306	curved DNA-binding protein CbpA; Provisional	100.0
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	100.0
PRK14283	378	chaperone protein DnaJ; Provisional	100.0
PRK14293	374	chaperone protein DnaJ; Provisional	100.0
PRK14292	371	chaperone protein DnaJ; Provisional	100.0
PRK14289	386	chaperone protein DnaJ; Provisional	100.0
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	100.0
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	100.0
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	100.0
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	99.96
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	99.96
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.81
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	99.8
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.8
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.79
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.77
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.76
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.75
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.74
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.74
PHA03102	153	Small T antigen; Reviewed	99.69
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.66
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.65
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.64
PRK01356	166	hscB co-chaperone HscB; Provisional	99.51
PRK05014	171	hscB co-chaperone HscB; Provisional	99.5
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	99.48
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.48
PF01556	81	CTDII: DnaJ C terminal domain; InterPro: IPR002939	99.46
PRK03578	176	hscB co-chaperone HscB; Provisional	99.43
PRK00294	173	hscB co-chaperone HscB; Provisional	99.43
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	99.39
PTZ00100	116	DnaJ chaperone protein; Provisional	99.38
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	99.31
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.31
PHA02624	647	large T antigen; Provisional	99.25
PRK14282	369	chaperone protein DnaJ; Provisional	99.14
PF01556	81	CTDII: DnaJ C terminal domain; InterPro: IPR002939	99.14
PRK01773	173	hscB co-chaperone HscB; Provisional	99.12
PRK14290	365	chaperone protein DnaJ; Provisional	99.03
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	99.02
PRK14294	366	chaperone protein DnaJ; Provisional	99.01
PRK14285	365	chaperone protein DnaJ; Provisional	99.0
PRK14299	291	chaperone protein DnaJ; Provisional	99.0
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	98.98
PRK10767	371	chaperone protein DnaJ; Provisional	98.95
PRK14298	377	chaperone protein DnaJ; Provisional	98.95
PRK14284	391	chaperone protein DnaJ; Provisional	98.94
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	98.9
PRK14287	371	chaperone protein DnaJ; Provisional	98.9
PRK14279	392	chaperone protein DnaJ; Provisional	98.9
PRK14300	372	chaperone protein DnaJ; Provisional	98.89
PRK14301	373	chaperone protein DnaJ; Provisional	98.89
PRK14288	369	chaperone protein DnaJ; Provisional	98.87
PRK14295	389	chaperone protein DnaJ; Provisional	98.87
PRK14293	374	chaperone protein DnaJ; Provisional	98.83
PRK14286	372	chaperone protein DnaJ; Provisional	98.83
PRK10266	306	curved DNA-binding protein CbpA; Provisional	98.82
PRK14291	382	chaperone protein DnaJ; Provisional	98.82
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	98.8
PRK14276	380	chaperone protein DnaJ; Provisional	98.79
PRK14280	376	chaperone protein DnaJ; Provisional	98.78
PRK14281	397	chaperone protein DnaJ; Provisional	98.77
PRK14297	380	chaperone protein DnaJ; Provisional	98.75
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	98.75
PRK14278	378	chaperone protein DnaJ; Provisional	98.73
PRK14292	371	chaperone protein DnaJ; Provisional	98.73
PRK14277	386	chaperone protein DnaJ; Provisional	98.69
PRK14296	372	chaperone protein DnaJ; Provisional	98.67
PRK14283	378	chaperone protein DnaJ; Provisional	98.67
PTZ00037	421	DnaJ_C chaperone protein; Provisional	98.64
PRK14289	386	chaperone protein DnaJ; Provisional	98.62
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	98.52
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	98.44
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	98.31
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.23
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	97.38
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	96.8
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	96.41
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	95.84
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	95.24
KOG0431	453	consensus Auxilin-like protein and related protein	94.64
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	86.83
PF11833	194	DUF3353: Protein of unknown function (DUF3353); In	83.57
PF13446	62	RPT: A repeated domain in UCH-protein	83.23
KOG0724	335	consensus Zuotin and related molecular chaperones	82.14

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.5e-67  Score=488.07  Aligned_cols=257  Identities=37%  Similarity=0.640  Sum_probs=219.6

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCCCCC
Q 038604            1 MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKSGTV   80 (315)
Q Consensus         1 m~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~   80 (315)
                      |.+|||+||||+++||.+|||+|||+||++||||+|+.  +++|+++|++|+|||||||||+||+.||+||+.+++++  
T Consensus         2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g--~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~g--   77 (371)
T COG0484           2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPG--DKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAG--   77 (371)
T ss_pred             CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--CHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccC--
Confidence            57899999999999999999999999999999999994  38999999999999999999999999999999988632  


Q ss_pred             CCCCCCCCCCCCCCccccCCCCCCCCCCCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCC
Q 038604           81 PTSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEELFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTAS  160 (315)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  160 (315)
                        ++++     .++++            |.+ ++.|||++|||++..      .      +.                  
T Consensus        78 --g~gg-----~g~~~------------fgg-~~~DIF~~~FgGg~~------~------~~------------------  107 (371)
T COG0484          78 --GFGG-----FGFGG------------FGG-DFGDIFEDFFGGGGG------G------RR------------------  107 (371)
T ss_pred             --CcCC-----CCcCC------------CCC-CHHHHHHHhhcCCCc------c------cC------------------
Confidence              1111     01111            111 689999999974210      0      00                  


Q ss_pred             CCCcccccCCceEEEEeeehhhHhcCceeEEEEeeeE----EcCCC----------------------------------
Q 038604          161 GGAAEFKKAPAVENLLPCSLEEIYKGAKKKMRISRNV----YDSVG----------------------------------  202 (315)
Q Consensus       161 ~~~~~~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~----~~g~G----------------------------------  202 (315)
                       +...++++.|+.+.|+|||+||+.|++++|.+++.+    |+|+|                                  
T Consensus       108 -~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C  186 (371)
T COG0484         108 -RPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTC  186 (371)
T ss_pred             -CCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEEEEEC
Confidence             112356889999999999999999999999987654    22221                                  


Q ss_pred             --------------------cEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCC-CCCCCcEEEEEEecCCCCeeecCCCe
Q 038604          203 --------------------KTRTVEEILTVEIKPGWKKGTKITFPEKGNQEP-GIIAADLIFIVDEKPHALYRRDGNDL  261 (315)
Q Consensus       203 --------------------~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~-g~~~GDL~v~i~v~~h~~f~R~g~dL  261 (315)
                                          .++.+.++|+|+||+|+.+|++|+++|+|++.+ ++++|||||+|.|++|+.|.|+|+||
T Consensus       187 ~~C~G~G~~i~~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~ir~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL  266 (371)
T COG0484         187 PTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDL  266 (371)
T ss_pred             CCCccceeECCCCCCCCCCCCeEeeeeEEEEECCCCCccCCEEEEecCcccCCCCCCCccEEEEEEeecCCCeEECCCce
Confidence                                057788999999999999999999999999974 77789999999999999999999999


Q ss_pred             EEEEeeCHHHHHcCCeEEEecCCCcEEEEecCCCcCCCcEEEEcCCCcCCCC
Q 038604          262 VVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPISK  313 (315)
Q Consensus       262 ~~~~~Isl~eal~G~~~~i~tldG~~~~i~i~~~~~~g~~~~i~g~G~P~~~  313 (315)
                      +++++||+.+|+||++|.|+||||+ ++|+||+++|+|+++||+|+|||..+
T Consensus       267 ~~~~~Is~~~AalG~~i~vptl~g~-~~l~ip~Gtq~G~~~rl~gkG~p~~~  317 (371)
T COG0484         267 YCEVPISFTEAALGGEIEVPTLDGR-VKLKIPAGTQTGEVFRLRGKGMPKLR  317 (371)
T ss_pred             EeccccCHHHHhcCCEEEEEecCCC-EEEecCCCCccCcEEEEcCCCccccC
Confidence            9999999999999999999999999 99999999999999999999999643

>PRK14288 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=5e-61  Score=455.12  Aligned_cols=257  Identities=29%  Similarity=0.493  Sum_probs=212.8

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCCCCC
Q 038604            1 MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKSGTV   80 (315)
Q Consensus         1 m~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~   80 (315)
                      |..|||+||||+++||.+|||+|||+||++||||+|+.  +++|+++|++|++||+||+||.+|+.||+||++++..+. 
T Consensus         1 ~~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~--~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~~-   77 (369)
T PRK14288          1 MELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAG--DKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQAG-   77 (369)
T ss_pred             CCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--ccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccCC-
Confidence            78999999999999999999999999999999999975  267899999999999999999999999999998764210 


Q ss_pred             CCCCCCCCCCCCCCccccCCCCCCCCCCCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCC
Q 038604           81 PTSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEELFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTAS  160 (315)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  160 (315)
                        + +.     .+++.         .  |  .++.++|++|||++      + .    +  .                  
T Consensus        78 --~-~~-----~~~~~---------~--f--~~~~~~F~~~fg~g------~-~----~--~------------------  105 (369)
T PRK14288         78 --A-SQ-----SDFSD---------F--F--EDLGSFFEDAFGFG------A-R----G--S------------------  105 (369)
T ss_pred             --C-Cc-----ccccc---------c--h--hhHHHHHHhhcCCC------C-c----c--c------------------
Confidence              0 00     01100         0  1  14556777777621      0 0    0  0                  


Q ss_pred             CCCcccccCCceEEEEeeehhhHhcCceeEEEEeeeEE----cC------------------------------------
Q 038604          161 GGAAEFKKAPAVENLLPCSLEEIYKGAKKKMRISRNVY----DS------------------------------------  200 (315)
Q Consensus       161 ~~~~~~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~----~g------------------------------------  200 (315)
                       .....++++|+.+.|.|||+|+|+|++++|.+.+.+.    +|                                    
T Consensus       106 -~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C  184 (369)
T PRK14288        106 -KRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDKALETCKQCNGQGQVFMRQGFMSFAQTCGAC  184 (369)
T ss_pred             -CcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcccCCCCCcCCCCCCCCcEEEEEeceEEEEEecCCC
Confidence             0011346789999999999999999999999875421    11                                    


Q ss_pred             --CC-------------cEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCCCCCCCcEEEEEEecCCCCeeecCCCeEEEE
Q 038604          201 --VG-------------KTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPGIIAADLIFIVDEKPHALYRRDGNDLVVGQ  265 (315)
Q Consensus       201 --~G-------------~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~g~~~GDL~v~i~v~~h~~f~R~g~dL~~~~  265 (315)
                        .|             .++.+.++++|.||||+.+|++|+|+|+|++.+++.+|||+|+|++++|+.|+|+|+||++++
T Consensus       185 ~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~l~g~G~~~~~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~  264 (369)
T PRK14288        185 QGKGKIIKTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLKNKGNEYEKGKRGDLYLEARVKEDEHFKREGCDLFIEA  264 (369)
T ss_pred             CCCceEccccCccCCCcceEEEEEEEEEecCCCCCCCCEEEEccCccCCCCCCCCCEEEEEEEEECCCcEEeCCEEEEEE
Confidence              11             145677899999999999999999999999987888999999999999999999999999999


Q ss_pred             eeCHHHHHcCCeEEEecCCCcEEEEecCCCcCCCcEEEEcCCCcCCCC
Q 038604          266 EITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPISK  313 (315)
Q Consensus       266 ~Isl~eal~G~~~~i~tldG~~~~i~i~~~~~~g~~~~i~g~G~P~~~  313 (315)
                      +|||+|||||+++.|+||||+.+.|+||+++++|++++|+|+|||..+
T Consensus       265 ~Isl~eAllG~~i~v~tLdG~~l~i~i~~~~~~g~~~~i~g~G~p~~~  312 (369)
T PRK14288        265 PVFFTTIALGHTIKVPSLKGDELELKIPRNARDRQTFAFRNEGVKHPE  312 (369)
T ss_pred             ecCHHHHhcCCEEEeecCCCCEEEEEeCCCCCCCcEEEEcCCCCCCCC
Confidence            999999999999999999998899999999999999999999999654

>PRK14296 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=4.3e-60  Score=448.86  Aligned_cols=261  Identities=25%  Similarity=0.424  Sum_probs=209.7

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCCCCC
Q 038604            1 MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKSGTV   80 (315)
Q Consensus         1 m~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~   80 (315)
                      -.+|||+||||+++||.+|||+|||+||++||||+|++   ++|+++|++|++||+|||||++|+.||+||++++..+. 
T Consensus         2 ~~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~---~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~~~-   77 (372)
T PRK14296          2 KKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS---PDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGSS-   77 (372)
T ss_pred             CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---chHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcCCC-
Confidence            03799999999999999999999999999999999975   67899999999999999999999999999998765321 


Q ss_pred             CCCCC-CCCCCCCCCcc-ccCCCCCCCCCCCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCC
Q 038604           81 PTSST-STSASRAGQHY-YHQRQHPNPSFRFNPRDAEDIYEELFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSST  158 (315)
Q Consensus        81 ~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~  158 (315)
                        +++ ++    +++.. |...  ++.+  +  .++.|+|++|||++      + .                        
T Consensus        78 --~~~~~~----~~~~~~~~~~--~~~g--~--~~f~d~f~~~fggg------~-~------------------------  114 (372)
T PRK14296         78 --GFSSNF----GDFEDLFSNM--GSSG--F--SSFTNIFSDFFGSN------K-S------------------------  114 (372)
T ss_pred             --CcCcCC----Cccccccccc--cccc--c--ccchhhhhhhcCCC------c-c------------------------
Confidence              000 00    01100 1000  0000  1  24568899988731      0 0                        


Q ss_pred             CCCCCcccccCCceEEEEeeehhhHhcCceeEEEEeeeEE----c-----------------CCCc--------------
Q 038604          159 ASGGAAEFKKAPAVENLLPCSLEEIYKGAKKKMRISRNVY----D-----------------SVGK--------------  203 (315)
Q Consensus       159 ~~~~~~~~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~----~-----------------g~G~--------------  203 (315)
                         +.....++.|+.+.|.|||+|+|+|++++|.+.+.+.    .                 |+|.              
T Consensus       115 ---~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~  191 (372)
T PRK14296        115 ---DYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQ  191 (372)
T ss_pred             ---CCCCcCCCCCeEEEeeccHHHhhCCeeEEEEEeeeeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEE
Confidence               0011346789999999999999999999998865421    1                 1111              


Q ss_pred             -------------------------EEeEEEEEEEEeCCCCCCCCEEEecCCCCCC-CCCCCCcEEEEEEecCCCCeeec
Q 038604          204 -------------------------TRTVEEILTVEIKPGWKKGTKITFPEKGNQE-PGIIAADLIFIVDEKPHALYRRD  257 (315)
Q Consensus       204 -------------------------~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~-~g~~~GDL~v~i~v~~h~~f~R~  257 (315)
                                               ++.+.++++|.||+|+++|++|+|+|+|++. +++.+|||+|+|+++||+.|+|+
T Consensus       192 ~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~  271 (372)
T PRK14296        192 SAKCNVCNGAGKIIKNKCKNCKGKGKYLERKKIEVNIPKGIRPNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEII  271 (372)
T ss_pred             EecCCCcCCcceeecccccCCCCceEEEEEEEEEEEECCCCCCCCEEEEeccccCCCCCCCCccEEEEEEEeCCCCEEEe
Confidence                                     3456689999999999999999999999986 57789999999999999999995


Q ss_pred             -CCCeEEEEeeCHHHHHcCCeEEEecCCCcEEEEecCCCcCCCcEEEEcCCCcCCC
Q 038604          258 -GNDLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPIS  312 (315)
Q Consensus       258 -g~dL~~~~~Isl~eal~G~~~~i~tldG~~~~i~i~~~~~~g~~~~i~g~G~P~~  312 (315)
                       |+||+++++|||+|||||+++.|+||||+ +.|+||+++++|++++|+|+|||..
T Consensus       272 ~G~DL~~~~~Isl~eAllG~~~~i~tldG~-~~v~ip~~t~~g~~~ri~GkGmP~~  326 (372)
T PRK14296        272 NNNDILMTYNISYLDAILGNEIIIKTLDGD-IKYKLPKSINSNELIIINNKGLYKS  326 (372)
T ss_pred             CCCcEEEEEecCHHHHhCCCEEEeeCCCCC-EEEEECCccCCCcEEEEcCCCCCcC
Confidence             89999999999999999999999999998 9999999999999999999999954

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=100.00  E-value=1.5e-59  Score=449.45  Aligned_cols=242  Identities=41%  Similarity=0.749  Sum_probs=207.1

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCCCCCC
Q 038604            2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKSGTVP   81 (315)
Q Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~   81 (315)
                      ..|||+||||+++||.+|||+|||+||++||||+|++      .++|++|++||+|||||.+|+.||+||++++.++.  
T Consensus        27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~------~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~~--   98 (421)
T PTZ00037         27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD------PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGGE--   98 (421)
T ss_pred             chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch------HHHHHHHHHHHHHhccHHHHHHHhhhcchhcccCC--
Confidence            4799999999999999999999999999999999864      47999999999999999999999999987664210  


Q ss_pred             CCCCCCCCCCCCCccccCCCCCCCCCCCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCC
Q 038604           82 TSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEELFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTASG  161 (315)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~  161 (315)
                                             .     ..++.|+|+.|||++      + .                           
T Consensus        99 -----------------------~-----~~d~~d~f~~~Fggg------~-~---------------------------  116 (421)
T PTZ00037         99 -----------------------Q-----PADASDLFDLIFGGG------R-K---------------------------  116 (421)
T ss_pred             -----------------------C-----CcchhhhHHHhhccc------c-c---------------------------
Confidence                                   0     024678999999741      0 0                           


Q ss_pred             CCcccccCCceEEEEeeehhhHhcCceeEEEEeeeEE--------------------cCCC-------------------
Q 038604          162 GAAEFKKAPAVENLLPCSLEEIYKGAKKKMRISRNVY--------------------DSVG-------------------  202 (315)
Q Consensus       162 ~~~~~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~--------------------~g~G-------------------  202 (315)
                       ....+++.|+.+.|.|||+|+|+|++++|.+.+.+.                    +|.|                   
T Consensus       117 -~~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C  195 (421)
T PTZ00037        117 -PGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTC  195 (421)
T ss_pred             -cccccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCCCCCCCccCCCCCCCCeEEEEEeecceeeEEEEeC
Confidence             001246789999999999999999999998864321                    1111                   


Q ss_pred             -------c---------------EEeEEEEEEEEeCCCCCCCCEEEecCCCCCCCCCCCCcEEEEEEecCCCCeeecCCC
Q 038604          203 -------K---------------TRTVEEILTVEIKPGWKKGTKITFPEKGNQEPGIIAADLIFIVDEKPHALYRRDGND  260 (315)
Q Consensus       203 -------~---------------~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~g~~~GDL~v~i~v~~h~~f~R~g~d  260 (315)
                             +               ++.+.++++|.||+|+.+|++|+|+|+|++.+++.+|||||+|++++|+.|+|+|+|
T Consensus       196 ~~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~dG~~I~~~G~Gd~~~~~~pGDLiv~I~~~ph~~F~R~G~D  275 (421)
T PTZ00037        196 NSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITFHGEADEKPNEIPGNVVFILNEKPHDTFKREGGD  275 (421)
T ss_pred             CCCCCcceeccccccCCcCCCcceeeeeeEEEEeeCCCCCCCcEEEEecccCCCCCCCCCcEEEEEEecCCCCcEEeCCe
Confidence                   1               345568899999999999999999999999888899999999999999999999999


Q ss_pred             eEEEEeeCHHHHHcCCeEEEecCCCcEEEEecCCC--cCCCcEEEEcCCCcCCCCC
Q 038604          261 LVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDI--VKPGTEIVVPNEGMPISKE  314 (315)
Q Consensus       261 L~~~~~Isl~eal~G~~~~i~tldG~~~~i~i~~~--~~~g~~~~i~g~G~P~~~~  314 (315)
                      |+++++|||+|||||+++.|+||||+.|.|+||++  ++||++++|+|+|||..+.
T Consensus       276 L~~~~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g~vt~pg~~~~I~geGmP~~~~  331 (421)
T PTZ00037        276 LFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVKPGDIKVINNEGMPTYKS  331 (421)
T ss_pred             EEEEEeCCHHHHhcCCEEEeeCCCCCeEEEEeCCCcccCCCcEEEeCCCCcccCCC
Confidence            99999999999999999999999999899999865  9999999999999997653

>PRK14286 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.4e-58  Score=438.76  Aligned_cols=266  Identities=31%  Similarity=0.583  Sum_probs=214.1

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCCCCC
Q 038604            1 MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKSGTV   80 (315)
Q Consensus         1 m~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~   80 (315)
                      -..|||+||||+++||.+|||+|||+||++||||+|+.  +++|+++|++|++||+||+||.+|+.||+||++++..+..
T Consensus         2 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~   79 (372)
T PRK14286          2 SERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKG--NKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAG   79 (372)
T ss_pred             CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--chHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhccccC
Confidence            04899999999999999999999999999999999975  3678999999999999999999999999999987753210


Q ss_pred             CCCCCCCCCCCCCCccccCCCCCCCCCCCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCC
Q 038604           81 PTSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEELFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTAS  160 (315)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  160 (315)
                        +++.     +++.+|.      .  .|  .++.|+|++|||+..    ++ .    . .+        .         
T Consensus        80 --~~~~-----~~~~~~~------~--~~--~~~~d~f~~ffgg~~----~~-~----~-~~--------~---------  115 (372)
T PRK14286         80 --GFGQ-----GAYTDFS------D--IF--GDFGDIFGDFFGGGR----GG-G----S-GG--------G---------  115 (372)
T ss_pred             --CCCC-----CCccccc------c--cc--cchhhHHHHhhCCCc----cC-C----C-cc--------c---------
Confidence              1000     0111110      0  01  257899999998421    00 0    0 00        0         


Q ss_pred             CCCcccccCCceEEEEeeehhhHhcCceeEEEEeeeEE----cCCC----------------------------------
Q 038604          161 GGAAEFKKAPAVENLLPCSLEEIYKGAKKKMRISRNVY----DSVG----------------------------------  202 (315)
Q Consensus       161 ~~~~~~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~----~g~G----------------------------------  202 (315)
                       ......++.|+.+.|.|||+|+|+|++++|.+.+.+.    +|+|                                  
T Consensus       116 -~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~  194 (372)
T PRK14286        116 -RRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQGFFSVATTCPT  194 (372)
T ss_pred             -ccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEeceEEEEEeCCC
Confidence             0112346889999999999999999999999875432    1111                                  


Q ss_pred             ------------------cEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCC-CCCCCcEEEEEEecCCCCeeecCCCeEE
Q 038604          203 ------------------KTRTVEEILTVEIKPGWKKGTKITFPEKGNQEP-GIIAADLIFIVDEKPHALYRRDGNDLVV  263 (315)
Q Consensus       203 ------------------~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~-g~~~GDL~v~i~v~~h~~f~R~g~dL~~  263 (315)
                                        .++.+.++++|.||+|+.+|++|+|+|+|++.+ +..+|||||+|++++|+.|+|+|+||++
T Consensus       195 C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~  274 (372)
T PRK14286        195 CRGKGTVISNPCKTCGGQGLQEKRRTINIKIPPGVETGSRLKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLIL  274 (372)
T ss_pred             CCceeeEecccCCCCCCCcEEecceEEEEEECCCCCCCCEEEECCccccCCCCCCCceEEEEEEEccCCCEEEecCCEEE
Confidence                              044566899999999999999999999999865 4567999999999999999999999999


Q ss_pred             EEeeCHHHHHcCCeEEEecCCCcEEEEecCCCcCCCcEEEEcCCCcCCCC
Q 038604          264 GQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPISK  313 (315)
Q Consensus       264 ~~~Isl~eal~G~~~~i~tldG~~~~i~i~~~~~~g~~~~i~g~G~P~~~  313 (315)
                      +++|||++||+|+++.|+||||+++.|+||+++++|++++|+|+|||..+
T Consensus       275 ~~~Isl~eAl~G~~~~i~tldG~~i~v~ip~g~~~g~~~ri~G~G~P~~~  324 (372)
T PRK14286        275 VRKISLAQAILGAEIEVPTIDGKKAKMKIPEGTESGQVFRLKGHGMPYLG  324 (372)
T ss_pred             EEEECHHHHhCCCEEEEeCCCCCEEEEEeCCccCCCcEEEECCCCCCCCC
Confidence            99999999999999999999999899999999999999999999999754

>PRK14285 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=3.4e-58  Score=435.24  Aligned_cols=263  Identities=31%  Similarity=0.557  Sum_probs=215.0

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCCCCC
Q 038604            1 MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKSGTV   80 (315)
Q Consensus         1 m~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~   80 (315)
                      |..|||+||||+++||.+|||+|||+||++||||+|+.  ++++.++|++|++||+||+|+.+|+.||+||++++..+. 
T Consensus         1 m~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~--~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~-   77 (365)
T PRK14285          1 MKRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKG--NKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGG-   77 (365)
T ss_pred             CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--CHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCC-
Confidence            77899999999999999999999999999999999975  367889999999999999999999999999998765321 


Q ss_pred             CCCCCCCCCCCCCCccccCCCCCCCCCCCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCC
Q 038604           81 PTSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEELFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTAS  160 (315)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  160 (315)
                        +++++   .+++.+|+        ..|  .++.|+|++|||+.     ++ .    .                     
T Consensus        78 --~~~~~---~~g~~~~~--------~~~--~~~~d~f~~~fgg~-----~~-~----~---------------------  111 (365)
T PRK14285         78 --GFEGF---SGGFSGFS--------DIF--EDFGDIFDSFFTGN-----RG-Q----D---------------------  111 (365)
T ss_pred             --Ccccc---CCCccccc--------ccc--ccHHHHHHHhhcCC-----cC-C----C---------------------
Confidence              10000   00111110        001  25789999999841     00 0    0                     


Q ss_pred             CCCcccccCCceEEEEeeehhhHhcCceeEEEEeeeEE----cCC-----------------C-----------------
Q 038604          161 GGAAEFKKAPAVENLLPCSLEEIYKGAKKKMRISRNVY----DSV-----------------G-----------------  202 (315)
Q Consensus       161 ~~~~~~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~----~g~-----------------G-----------------  202 (315)
                       +.....++.|+.+.|.|||+|+|+|++++|.+.|.+.    +|+                 |                 
T Consensus       112 -~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~  190 (365)
T PRK14285        112 -KNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQGGGFFRVTTTCPK  190 (365)
T ss_pred             -CCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCCCCCCcccCCCCCCccCCCccCceeEEecCceeEEeeecCC
Confidence             0011346789999999999999999999999876532    111                 1                 


Q ss_pred             ------------------cEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCCC-CCCCcEEEEEEecCCCCeeecCCCeEE
Q 038604          203 ------------------KTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPG-IIAADLIFIVDEKPHALYRRDGNDLVV  263 (315)
Q Consensus       203 ------------------~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~g-~~~GDL~v~i~v~~h~~f~R~g~dL~~  263 (315)
                                        .++.+.++++|.||||+++|++|+|+|+|++.++ ..+|||+|+|++++|+.|+|+|+||++
T Consensus       191 C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~  270 (365)
T PRK14285        191 CYGNGKIISNPCKSCKGKGSLKKKETIELKIPAGIDDNQQIKMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYA  270 (365)
T ss_pred             CCCcccccCCCCCCCCCCCEEeccEEEEEEECCCCCCCCEEEEeeccccCCCCCCCCCEEEEEEEecCCCeEEeccceEE
Confidence                              0356678999999999999999999999999754 568999999999999999999999999


Q ss_pred             EEeeCHHHHHcCCeEEEecCCCcEEEEecCCCcCCCcEEEEcCCCcCCCC
Q 038604          264 GQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPISK  313 (315)
Q Consensus       264 ~~~Isl~eal~G~~~~i~tldG~~~~i~i~~~~~~g~~~~i~g~G~P~~~  313 (315)
                      +++|||.|||+|+++.|+||||+++.|+||+++++|++++|+|+|||..+
T Consensus       271 ~~~Isl~eAl~G~~~~i~tldG~~v~V~Ip~g~~~g~~irl~GkG~p~~~  320 (365)
T PRK14285        271 TLPISFTQAALGKEIKIQTIASKKIKIKIPKGTENDEQIIIKNEGMPILH  320 (365)
T ss_pred             EEecCHHHHhCCCEEEEECCCCCEEEEEeCCCcCCCcEEEECCCCccCCC
Confidence            99999999999999999999999899999999999999999999999754

>PRK14278 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.1e-57  Score=431.65  Aligned_cols=256  Identities=34%  Similarity=0.567  Sum_probs=210.5

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCCCCC
Q 038604            1 MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKSGTV   80 (315)
Q Consensus         1 m~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~   80 (315)
                      |..|||+||||+++||.+|||+|||+||++||||+|++   ++|+++|++|++||+||+|+.+|+.||+||++...++  
T Consensus         1 m~~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~---~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~--   75 (378)
T PRK14278          1 MARDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD---EEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAG--   75 (378)
T ss_pred             CCCCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc---HHHHHHHHHHHHHHHHhchhhhhhhhhccCCcccccc--
Confidence            78899999999999999999999999999999999985   6789999999999999999999999999998632211  


Q ss_pred             CCCCCCCCCCCCCCccccCCCCCCCCCCCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCC
Q 038604           81 PTSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEELFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTAS  160 (315)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  160 (315)
                        +. +     ++   |+      .+  |  .++.|+|++|||++      + .    + .+                  
T Consensus        76 --~~-~-----~g---~~------~~--f--~~~~d~f~~ffgg~------g-~----~-~~------------------  104 (378)
T PRK14278         76 --GG-G-----GG---FG------GG--F--GGLGDVFEAFFGGG------A-A----S-RG------------------  104 (378)
T ss_pred             --CC-C-----CC---CC------cC--c--CchhHHHHHHhCCC------C-C----C-CC------------------
Confidence              00 0     01   10      01  1  14678999999841      0 0    0 00                  


Q ss_pred             CCCcccccCCceEEEEeeehhhHhcCceeEEEEeeeEE---------------------cCCCc----------------
Q 038604          161 GGAAEFKKAPAVENLLPCSLEEIYKGAKKKMRISRNVY---------------------DSVGK----------------  203 (315)
Q Consensus       161 ~~~~~~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~---------------------~g~G~----------------  203 (315)
                       .....+++.|+.+.|.|||+|+|+|+++++.+.+.+.                     +|.|.                
T Consensus       105 -~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~  183 (378)
T PRK14278        105 -PRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSR  183 (378)
T ss_pred             -CccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEE
Confidence             0011346889999999999999999999998876431                     11111                


Q ss_pred             -----------------------EEeEEEEEEEEeCCCCCCCCEEEecCCCCCCC-CCCCCcEEEEEEecCCCCeeecCC
Q 038604          204 -----------------------TRTVEEILTVEIKPGWKKGTKITFPEKGNQEP-GIIAADLIFIVDEKPHALYRRDGN  259 (315)
Q Consensus       204 -----------------------~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~-g~~~GDL~v~i~v~~h~~f~R~g~  259 (315)
                                             ++.++++++|.||||+++|++|+|+|+|++.+ +..+|||+|+|+++||+.|+|+|+
T Consensus       184 ~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~~~~h~~F~R~G~  263 (378)
T PRK14278        184 PCPTCRGVGEVIPDPCHECAGDGRVRARREITVKIPAGVGDGMRIRLAAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGD  263 (378)
T ss_pred             ECCCCCccceeeCCCCCCCCCceeEecceEEEEEECCCCCCCcEEEEccCcCCCCCCCCCCCEEEEEEECcCCCEEEcCC
Confidence                                   34556899999999999999999999999976 456799999999999999999999


Q ss_pred             CeEEEEeeCHHHHHcCCeEEEecCCCcEEEEecCCCcCCCcEEEEcCCCcCCCC
Q 038604          260 DLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPISK  313 (315)
Q Consensus       260 dL~~~~~Isl~eal~G~~~~i~tldG~~~~i~i~~~~~~g~~~~i~g~G~P~~~  313 (315)
                      ||+++++|||.+||+|+++.|+|||+..+.|+||+++++|++++|+|+|||..+
T Consensus       264 DL~~~~~Isl~eAl~G~~~~i~tld~~~i~v~ip~g~~~g~~lrl~g~G~p~~~  317 (378)
T PRK14278        264 DLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPGTQPGSVITLRGRGMPHLR  317 (378)
T ss_pred             CEEEEEecCHHHHhcCCeEEEecCCCCeEEEEeCCCcCCCcEEEECCCCCCCCC
Confidence            999999999999999999999999777799999999999999999999999743

>PRK14298 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.6e-57  Score=432.11  Aligned_cols=254  Identities=31%  Similarity=0.537  Sum_probs=210.8

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCCCCCC
Q 038604            2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKSGTVP   81 (315)
Q Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~   81 (315)
                      .+|||+||||+++|+.+|||+|||+||++||||+|++   ++++++|++|++||++|+||.+|+.||+||++++..+.. 
T Consensus         4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~---~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~-   79 (377)
T PRK14298          4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE---PDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYS-   79 (377)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC---hhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccC-
Confidence            4799999999999999999999999999999999975   678899999999999999999999999999987653210 


Q ss_pred             CCCCCCCCCCCCCccccCCCCCCCCCCCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCC
Q 038604           82 TSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEELFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTASG  161 (315)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~  161 (315)
                          +     .  .+|.+     .+  |  .++.|+|++|||++.     + .                           
T Consensus        80 ----~-----~--~~~~~-----~~--~--~~~~d~f~~~Fgg~~-----~-~---------------------------  106 (377)
T PRK14298         80 ----A-----E--DIFRG-----AD--F--GGFGDIFEMFFGGGG-----R-R---------------------------  106 (377)
T ss_pred             ----c-----c--ccccc-----CC--c--CcchhhhHhhhcCCC-----c-c---------------------------
Confidence                0     0  00100     00  1  135689999998410     0 0                           


Q ss_pred             CCcccccCCceEEEEeeehhhHhcCceeEEEEeeeEEc----C-----------------CCc-----------------
Q 038604          162 GAAEFKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYD----S-----------------VGK-----------------  203 (315)
Q Consensus       162 ~~~~~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~----g-----------------~G~-----------------  203 (315)
                      .....+++.|+.+.|.|||+|+|+|++++|.+.+.+.|    |                 .|.                 
T Consensus       107 ~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~  186 (377)
T PRK14298        107 GRMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTT  186 (377)
T ss_pred             CCCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEe
Confidence            00113467899999999999999999999998754321    1                 111                 


Q ss_pred             ----------------------EEeEEEEEEEEeCCCCCCCCEEEecCCCCCC-CCCCCCcEEEEEEecCCCCeeecCCC
Q 038604          204 ----------------------TRTVEEILTVEIKPGWKKGTKITFPEKGNQE-PGIIAADLIFIVDEKPHALYRRDGND  260 (315)
Q Consensus       204 ----------------------~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~-~g~~~GDL~v~i~v~~h~~f~R~g~d  260 (315)
                                            ++.+.++++|.||||+++|++|+|+|+|++. +++.+|||||+|++++|+.|+|+|+|
T Consensus       187 C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~D  266 (377)
T PRK14298        187 CSTCHGRGQVIESPCPVCSGTGKVRKTRKITVNVPAGADSGLRLKLSGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDD  266 (377)
T ss_pred             CCCCCCCCcccCCCCCCCCCccEEEEEEEEEecCCCCCCCCCEEEEecccCCCCCCCCCcCEEEEEEEecCCCeEEEcCc
Confidence                                  3456789999999999999999999999985 56779999999999999999999999


Q ss_pred             eEEEEeeCHHHHHcCCeEEEecCCCcEEEEecCCCcCCCcEEEEcCCCcCCCC
Q 038604          261 LVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPISK  313 (315)
Q Consensus       261 L~~~~~Isl~eal~G~~~~i~tldG~~~~i~i~~~~~~g~~~~i~g~G~P~~~  313 (315)
                      |+++++|||.|||+|+++.|+||||+ +.|+||+++++|++++|+|+|||..+
T Consensus       267 L~~~~~Isl~eAl~G~~~~i~tldG~-i~v~ip~g~~~g~~lri~g~G~p~~~  318 (377)
T PRK14298        267 IISEIPISFTQAALGADIMVPTLYGK-VKMNIPPGTQTHSVFRLKDKGMPRLH  318 (377)
T ss_pred             EEEEEEeCHHHHhCCCeEEEecCCCC-EEEEeCCCcccCCEEEECCCCCCCCC
Confidence            99999999999999999999999998 89999999999999999999999753

>PRK14287 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=4.1e-57  Score=428.66  Aligned_cols=252  Identities=30%  Similarity=0.567  Sum_probs=209.5

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCCCCCC
Q 038604            2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKSGTVP   81 (315)
Q Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~   81 (315)
                      ..|||+||||+++||.+|||+|||+||++||||+|+.   ++++++|++|++||++|+||.+|+.||+||++++..+.  
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~---~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~--   77 (371)
T PRK14287          3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA---PDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGF--   77 (371)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---hhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCccccccc--
Confidence            3699999999999999999999999999999999975   67889999999999999999999999999998765321  


Q ss_pred             CCCCCCCCCCCCCccccCCCCCCCCCCCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCC
Q 038604           82 TSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEELFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTASG  161 (315)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~  161 (315)
                       +  +     +++          .+  |  .++.|+|++|||++.     + .      .                    
T Consensus        78 -~--~-----~~~----------~~--f--~~~~d~f~~~fgg~~-----~-~------~--------------------  103 (371)
T PRK14287         78 -G--G-----GGA----------GD--F--GGFSDIFDMFFGGGG-----G-R------R--------------------  103 (371)
T ss_pred             -C--C-----CCC----------cc--c--cchHHHHHhhhcccc-----C-C------C--------------------
Confidence             0  0     000          01  1  135799999998410     0 0      0                    


Q ss_pred             CCcccccCCceEEEEeeehhhHhcCceeEEEEeeeEEc----CCC-----------------c-----------------
Q 038604          162 GAAEFKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYD----SVG-----------------K-----------------  203 (315)
Q Consensus       162 ~~~~~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~----g~G-----------------~-----------------  203 (315)
                      ....+.++.|+.+.|.|||+|+|+|++++|.+.+.+.|    |+|                 .                 
T Consensus       104 ~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~  183 (371)
T PRK14287        104 NPNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRV  183 (371)
T ss_pred             CCCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEe
Confidence            00112468899999999999999999999988764321    111                 0                 


Q ss_pred             ----------------------EEeEEEEEEEEeCCCCCCCCEEEecCCCCCC-CCCCCCcEEEEEEecCCCCeeecCCC
Q 038604          204 ----------------------TRTVEEILTVEIKPGWKKGTKITFPEKGNQE-PGIIAADLIFIVDEKPHALYRRDGND  260 (315)
Q Consensus       204 ----------------------~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~-~g~~~GDL~v~i~v~~h~~f~R~g~d  260 (315)
                                            ++.+.++++|.||+|+++|++|+|+|+|++. .+..+|||+|+|++++|+.|+|+|+|
T Consensus       184 C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~D  263 (371)
T PRK14287        184 CHHCEGTGKIIKQKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVSGQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDD  263 (371)
T ss_pred             CCCCCCCCccccccCCCCCCeeEEeeeEEEEEEECCcCCCCCEEEEccCCcCCCCCCCCccEEEEEEEecCCCEEEecCC
Confidence                                  2345678999999999999999999999986 45678999999999999999999999


Q ss_pred             eEEEEeeCHHHHHcCCeEEEecCCCcEEEEecCCCcCCCcEEEEcCCCcCCCC
Q 038604          261 LVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPISK  313 (315)
Q Consensus       261 L~~~~~Isl~eal~G~~~~i~tldG~~~~i~i~~~~~~g~~~~i~g~G~P~~~  313 (315)
                      |+++++|||++||+|+++.|+||||+ +.|+||+++++|++++|+|+|||..+
T Consensus       264 L~~~~~Isl~eAl~G~~~~i~~ldg~-i~v~ip~g~~~g~~~ri~g~G~p~~~  315 (371)
T PRK14287        264 IYCEMPLTFPQVALGDEIEVPTLNGK-VKLKIPAGTQTGTSFRLRGKGVPNVH  315 (371)
T ss_pred             eEEEEeccHHHHhCCCEEEEEcCCCC-EEEEECCCccCCcEEEEcCCCccCCC
Confidence            99999999999999999999999998 89999999999999999999999653

>PRK14277 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=9.9e-57  Score=428.38  Aligned_cols=268  Identities=33%  Similarity=0.557  Sum_probs=212.7

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCCCCCC
Q 038604            2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKSGTVP   81 (315)
Q Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~   81 (315)
                      ..|||+||||+++||.+|||+|||+||++||||+|+.  .++++++|++|++||+||+|+.+|+.||+||++++..+...
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~   81 (386)
T PRK14277          4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPG--DKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFG   81 (386)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCC--chHHHHHHHHHHHHHHHhCCHHHHHHHHhhccccccccccc
Confidence            4799999999999999999999999999999999985  36788999999999999999999999999999877532110


Q ss_pred             CCCCCCCCCCCCCccccCCCCCCCCCCCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCC
Q 038604           82 TSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEELFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTASG  161 (315)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~  161 (315)
                      .+  +     .+..+|..     .++.+...++.|+|++||+..  |  ++ .    +  .       .           
T Consensus        82 ~~--~-----~~~~g~~~-----~~~~~~~~~~~d~f~~~F~~~--f--gg-~----~--~-------~-----------  120 (386)
T PRK14277         82 QG--G-----FGQGGFGG-----GGFDFDFGGFGDIFEDIFGDF--F--GT-G----R--R-------R-----------  120 (386)
T ss_pred             cC--C-----cCCCCccc-----cCccccccchhHHHHHhhccc--c--cC-C----C--c-------C-----------
Confidence            00  0     00001100     011111124668899988731  1  10 0    0  0       0           


Q ss_pred             CCcccccCCceEEEEeeehhhHhcCceeEEEEeeeEEc----CCC-----------------------------------
Q 038604          162 GAAEFKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYD----SVG-----------------------------------  202 (315)
Q Consensus       162 ~~~~~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~----g~G-----------------------------------  202 (315)
                      ......+++|+.+.|.|||+|+|+|++++|.+.|.+.|    |+|                                   
T Consensus       121 ~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~  200 (386)
T PRK14277        121 AETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRT  200 (386)
T ss_pred             CCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEeeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEE
Confidence            00113468899999999999999999999998765421    111                                   


Q ss_pred             ---------------------cEEeEEEEEEEEeCCCCCCCCEEEecCCCCCC-CCCCCCcEEEEEEecCCCCeeecCCC
Q 038604          203 ---------------------KTRTVEEILTVEIKPGWKKGTKITFPEKGNQE-PGIIAADLIFIVDEKPHALYRRDGND  260 (315)
Q Consensus       203 ---------------------~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~-~g~~~GDL~v~i~v~~h~~f~R~g~d  260 (315)
                                           .++.+.++++|.||+|+++|++|+|+|+|++. .+..+|||+|+|++++|+.|+|+|+|
T Consensus       201 C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~D  280 (386)
T PRK14277        201 CDRCHGEGKIITDPCNKCGGTGRIRRRRKIKVNIPAGIDDGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYN  280 (386)
T ss_pred             CCCCCcceeeccCCCCCCCCCcEEeeeeEEEEecCCCccCCcEEEEccccccCCCCCCCccEEEEEEEecCCCeEEecCC
Confidence                                 03456788999999999999999999999985 45678999999999999999999999


Q ss_pred             eEEEEeeCHHHHHcCCeEEEecCCCcEEEEecCCCcCCCcEEEEcCCCcCCCC
Q 038604          261 LVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPISK  313 (315)
Q Consensus       261 L~~~~~Isl~eal~G~~~~i~tldG~~~~i~i~~~~~~g~~~~i~g~G~P~~~  313 (315)
                      |+++++|||+|||+|+++.|+||||+ +.|+||+++++|++++|+|+|||..+
T Consensus       281 L~~~~~Isl~eAl~G~~~~i~tldG~-~~v~ip~g~~~g~~~ri~g~G~p~~~  332 (386)
T PRK14277        281 VYLEMPITFTDAALGGEIEIPTLDGK-VKFTIPEGTQTGTKFRLRGKGIPHLR  332 (386)
T ss_pred             EEEEEEcCHHHHhCCCEEEEEcCCCC-EEEEECCCCCCCCEEEECCCCCCCCC
Confidence            99999999999999999999999998 89999999999999999999999754

>PRK14276 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=6.3e-57  Score=428.93  Aligned_cols=260  Identities=28%  Similarity=0.507  Sum_probs=211.6

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCCCCCC
Q 038604            2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKSGTVP   81 (315)
Q Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~   81 (315)
                      ..|||+||||+++||.+|||+|||+||++||||+|++   +.++++|++|++||++|+||.+|+.||+||++++.+++..
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~---~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~~~~~   79 (380)
T PRK14276          3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE---PGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGG   79 (380)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---cCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccCCCCC
Confidence            4799999999999999999999999999999999975   5688999999999999999999999999999877532110


Q ss_pred             CCCCCCCCCCCCCccccCCCCCCCCCCCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCC
Q 038604           82 TSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEELFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTASG  161 (315)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~  161 (315)
                      .+        +++++|...    .+  +  .++.|+|++|||++     ++      . .                    
T Consensus        80 ~~--------~~~~~~~~~----~~--~--~~~~d~f~~~fgg~-----~~------~-~--------------------  111 (380)
T PRK14276         80 GA--------GGFGGFDGS----GG--F--GGFEDIFSSFFGGG-----GA------R-R--------------------  111 (380)
T ss_pred             CC--------CCCCCcccc----cc--c--cchhhHHHHHhCcc-----cc------c-c--------------------
Confidence            00        011111100    01  1  24679999999841     00      0 0                    


Q ss_pred             CCcccccCCceEEEEeeehhhHhcCceeEEEEeeeEE----cCC-----------------C------------------
Q 038604          162 GAAEFKKAPAVENLLPCSLEEIYKGAKKKMRISRNVY----DSV-----------------G------------------  202 (315)
Q Consensus       162 ~~~~~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~----~g~-----------------G------------------  202 (315)
                      .....+++.|+.+.|.|||+|+|+|++++|.+.+.+.    +|+                 |                  
T Consensus       112 ~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~  191 (380)
T PRK14276        112 NPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVT  191 (380)
T ss_pred             CcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEE
Confidence            0011346789999999999999999999998865421    111                 1                  


Q ss_pred             ---------------------cEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCC-CCCCCcEEEEEEecCCCCeeecCCC
Q 038604          203 ---------------------KTRTVEEILTVEIKPGWKKGTKITFPEKGNQEP-GIIAADLIFIVDEKPHALYRRDGND  260 (315)
Q Consensus       203 ---------------------~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~-g~~~GDL~v~i~v~~h~~f~R~g~d  260 (315)
                                           .++.+.++++|.||+|+++|++|+|+|+|++.+ +..+|||+|+|++++|+.|+|+|+|
T Consensus       192 C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~D  271 (380)
T PRK14276        192 CDVCHGTGKEIKEPCQTCHGTGHEKQAHTVSVKIPAGVETGQQIRLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGST  271 (380)
T ss_pred             CCCCCCCCccccCCCCCCCCceEEEEEEEEEEEeCCCccCCcEEEEeccccCCCCCCCCcCEEEEEEEEECcceeeecce
Confidence                                 034567899999999999999999999999864 4567999999999999999999999


Q ss_pred             eEEEEeeCHHHHHcCCeEEEecCCCcEEEEecCCCcCCCcEEEEcCCCcCCCC
Q 038604          261 LVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPISK  313 (315)
Q Consensus       261 L~~~~~Isl~eal~G~~~~i~tldG~~~~i~i~~~~~~g~~~~i~g~G~P~~~  313 (315)
                      |+++++|||.|||+|+++.|+||||+ +.|+||+++++|++++|+|+|||..+
T Consensus       272 L~~~~~Isl~eAl~G~~~~v~tldg~-i~v~ip~g~~~g~~~~i~g~G~p~~~  323 (380)
T PRK14276        272 IYYTLPISFVQAALGDTVEVPTVHGD-VELKIPAGTQTGKKFRLRGKGAPKLR  323 (380)
T ss_pred             EEEEEecCHHHHhCCCeEEEEcCCCc-EEEEECCCCCCCCEEEECCCCcCCCC
Confidence            99999999999999999999999998 89999999999999999999999753

>PRK14279 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=8.2e-57  Score=429.19  Aligned_cols=272  Identities=29%  Similarity=0.442  Sum_probs=206.3

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCCCCC
Q 038604            1 MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKSGTV   80 (315)
Q Consensus         1 m~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~   80 (315)
                      |.+|||+||||+++|+.+|||+|||+||++||||+|+.  +++|+++|++|++||+|||||++|+.||+||+++...+..
T Consensus         7 ~~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~   84 (392)
T PRK14279          7 VEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPG--DPAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFG   84 (392)
T ss_pred             cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--ChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhhccccccc
Confidence            46899999999999999999999999999999999975  3678999999999999999999999999999764322211


Q ss_pred             CCCCCCCCCCCCCCccccCCCCCCCCCCC----------CCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCCCccccccc
Q 038604           81 PTSSTSTSASRAGQHYYHQRQHPNPSFRF----------NPRDAEDIYEELFGSESNNNSGGQRGNNHNIRGYSHREGLF  150 (315)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~f  150 (315)
                      ..++.+    .+++++|+.+.. +..++|          ....+.|+|+.||+++      + .                
T Consensus        85 ~~~~~~----~~~~~g~~~~~~-~~~~d~~~~f~~~~~~~~~~f~d~f~~~fg~~------~-~----------------  136 (392)
T PRK14279         85 GRRFDG----GGGFGGFGTGGD-GAEFNLNDLFDAAGRGGGGGIGDLFGGLFNRG------G-G----------------  136 (392)
T ss_pred             cccccC----CCCCCCcccccc-ccCcChhhhhcccccccccchhhhhhhhhcCC------C-c----------------
Confidence            000000    000111110000 000000          0001234444444310      0 0                


Q ss_pred             cCCCCCCCCCCCCcccccCCceEEEEeeehhhHhcCceeEEEEeeeEE----cCCC------------------------
Q 038604          151 RNGNCSSTASGGAAEFKKAPAVENLLPCSLEEIYKGAKKKMRISRNVY----DSVG------------------------  202 (315)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~----~g~G------------------------  202 (315)
                               +.+....++++|+.+.|.|||+|+|+|++++|.+.+.+.    +|+|                        
T Consensus       137 ---------~~~~~~~~~g~di~~~l~ltLee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g  207 (392)
T PRK14279        137 ---------SARPSRPRRGNDLETETTLDFVEAAKGVTMPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQG  207 (392)
T ss_pred             ---------ccccCCCCCCCCeEEEEEEEHHHHhCCeEEEEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEec
Confidence                     001112346889999999999999999999998865431    1111                        


Q ss_pred             ----------------------------cEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCC-CCCCCcEEEEEEecCCCC
Q 038604          203 ----------------------------KTRTVEEILTVEIKPGWKKGTKITFPEKGNQEP-GIIAADLIFIVDEKPHAL  253 (315)
Q Consensus       203 ----------------------------~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~-g~~~GDL~v~i~v~~h~~  253 (315)
                                                  .++.+.++++|.||||+.+|++|+|+|+|++.+ +..+|||+|+|++++|+.
T Consensus       208 ~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~  287 (392)
T PRK14279        208 AFGFSEPCTDCRGTGSIIEDPCEECKGTGVTTRTRTINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKV  287 (392)
T ss_pred             ceEEEEecCCCCceeEEeCCcCCCCCCCeEEEEeeeeEEEeCCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCc
Confidence                                        145677899999999999999999999999865 456799999999999999


Q ss_pred             eeecCCCeEEEEeeCHHHHHcCCeEEEecCCCcEEEEecCCCcCCCcEEEEcCCCcCCC
Q 038604          254 YRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPIS  312 (315)
Q Consensus       254 f~R~g~dL~~~~~Isl~eal~G~~~~i~tldG~~~~i~i~~~~~~g~~~~i~g~G~P~~  312 (315)
                      |+|+|+||+++++|||.+||+|+++.|+||||+ +.|+||+++++|++++|+|+|||..
T Consensus       288 F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~-i~v~Ip~g~~~g~~iri~g~G~p~~  345 (392)
T PRK14279        288 FGRDGDDLTVTVPVSFTELALGSTLSVPTLDGP-VGVKVPAGTADGRILRVRGRGVPKR  345 (392)
T ss_pred             ceeecCcEEEEEEccHHHHcCCceEEEEcCCce-EEEEECCCCCCCCEEEECCCCCCCC
Confidence            999999999999999999999999999999997 8999999999999999999999963

>PRK14280 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.6e-56  Score=425.65  Aligned_cols=256  Identities=31%  Similarity=0.555  Sum_probs=210.4

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCCCCCCC
Q 038604            3 FDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKSGTVPT   82 (315)
Q Consensus         3 ~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~   82 (315)
                      .|||+||||+++|+.+|||+|||+||++||||+|++   +.++++|++|++||++|+||.+|+.||+||++++..+...+
T Consensus         4 ~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~---~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~   80 (376)
T PRK14280          4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE---EGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGGG   80 (376)
T ss_pred             CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCcCCC
Confidence            799999999999999999999999999999999976   56889999999999999999999999999998775321000


Q ss_pred             CCCCCCCCCCCCccccCCCCCCCCCCCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCC
Q 038604           83 SSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEELFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTASGG  162 (315)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~  162 (315)
                      +   +     +..+|.      ++  |   ++.|+|++|||++      + .    . .                    .
T Consensus        81 ~---~-----~~~~~~------~~--~---~~~d~f~~~fgg~------~-~----~-~--------------------~  109 (376)
T PRK14280         81 G---F-----GGGDFG------GG--F---GFEDIFSSFFGGG------G-R----R-R--------------------D  109 (376)
T ss_pred             C---C-----CCCCcc------cc--c---cchhhHHHHhCCc------c-c----c-C--------------------c
Confidence            0   0     000010      01  1   3578999999741      0 0    0 0                    0


Q ss_pred             CcccccCCceEEEEeeehhhHhcCceeEEEEeeeEEc----CCC------------------------------------
Q 038604          163 AAEFKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYD----SVG------------------------------------  202 (315)
Q Consensus       163 ~~~~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~----g~G------------------------------------  202 (315)
                      ....+++.|+.+.|.|||+|+|+|++++|.+.+.+.|    |+|                                    
T Consensus       110 ~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C  189 (376)
T PRK14280        110 PNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTC  189 (376)
T ss_pred             ccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEc
Confidence            0113468899999999999999999999998765321    111                                    


Q ss_pred             --------------------cEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCC-CCCCCcEEEEEEecCCCCeeecCCCe
Q 038604          203 --------------------KTRTVEEILTVEIKPGWKKGTKITFPEKGNQEP-GIIAADLIFIVDEKPHALYRRDGNDL  261 (315)
Q Consensus       203 --------------------~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~-g~~~GDL~v~i~v~~h~~f~R~g~dL  261 (315)
                                          .++.+.++++|.||+|+++|++|+|+|+|++.+ +..+|||+|+|++++|+.|+|+|+||
T Consensus       190 ~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL  269 (376)
T PRK14280        190 PHCNGTGQEIKEKCPTCHGKGKVRKRKKINVKIPAGVDNGQQIRVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDI  269 (376)
T ss_pred             CCCCCCCceecCCCCCCCCceEEEEEEEEEEEeCCCCcCCcEEEEcccccCCCCCCCCcCEEEEEEEecCCCeEEecCCE
Confidence                                034567899999999999999999999999854 46789999999999999999999999


Q ss_pred             EEEEeeCHHHHHcCCeEEEecCCCcEEEEecCCCcCCCcEEEEcCCCcCCCC
Q 038604          262 VVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPISK  313 (315)
Q Consensus       262 ~~~~~Isl~eal~G~~~~i~tldG~~~~i~i~~~~~~g~~~~i~g~G~P~~~  313 (315)
                      +++++|||+|||+|+++.|+||||+ +.|+||+++++|++++|+|+|||..+
T Consensus       270 ~~~~~Isl~eAl~G~~~~i~tldg~-i~v~ip~g~~~g~~~~i~g~G~p~~~  320 (376)
T PRK14280        270 YCEMPLTFAQAALGDEIEVPTLHGK-VKLKIPAGTQTGTQFRLKGKGVPNVR  320 (376)
T ss_pred             EEEEecCHHHHhCCCEEEEecCCce-EEEEECCCCCCCcEEEEcCCCCCCCC
Confidence            9999999999999999999999997 89999999999999999999999753

>PRK14291 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.5e-56  Score=426.67  Aligned_cols=270  Identities=37%  Similarity=0.586  Sum_probs=215.1

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCCCCC
Q 038604            1 MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKSGTV   80 (315)
Q Consensus         1 m~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~   80 (315)
                      |.+|||+||||+++|+.+|||+|||+||++||||+|++   +++.++|++|++||++|+||.+|+.||+||++++.....
T Consensus         1 ~~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~---~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~   77 (382)
T PRK14291          1 AKKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN---PEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQ   77 (382)
T ss_pred             CCCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC---ccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccC
Confidence            67899999999999999999999999999999999986   678899999999999999999999999999987653210


Q ss_pred             CCCCCCCCCCCCCCccccCCCCCCCCCCCCCCChHHHHHHhhCC---CCCCCCCCCCCCCCCCCCCccccccccCCCCCC
Q 038604           81 PTSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEELFGS---ESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSS  157 (315)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~fg~---~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~  157 (315)
                        +.       .+..+|.       .  +...++.|+|.+||+.   +..|  ++       ..         ..   ..
T Consensus        78 --~~-------~~~~~~~-------~--~~~~~~~d~f~~~f~~fg~~~~f--g~-------~~---------~~---~~  118 (382)
T PRK14291         78 --QQ-------QGQEGFS-------D--FGGGNIEDILEDVFDIFGFGDIF--GR-------RR---------AT---RE  118 (382)
T ss_pred             --cc-------ccccccc-------c--ccCCCHHHHHHHHHHhccccccc--cc-------cc---------cc---cc
Confidence              00       0000110       0  1113577899988642   1111  00       00         00   00


Q ss_pred             CCCCCCcccccCCceEEEEeeehhhHhcCceeEEEEeeeEEc----CCC-------------------------------
Q 038604          158 TASGGAAEFKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYD----SVG-------------------------------  202 (315)
Q Consensus       158 ~~~~~~~~~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~----g~G-------------------------------  202 (315)
                      . ........+++|+.+.|.|||+|+|+|++++|.+.+.+.|    |+|                               
T Consensus       119 ~-~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~  197 (382)
T PRK14291        119 R-RKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRGGFFRISQT  197 (382)
T ss_pred             c-ccccccccCCCCEEEEEEEEHHHhhCCEEEEEEEeeeccCCCCccccCCCCCCCccCCCCCCceEEEEecceEEEEec
Confidence            0 0001123468899999999999999999999998765321    211                               


Q ss_pred             --------------------cEEeEEEEEEEEeCCCCCCCCEEEecCCCCCC-CCCCCCcEEEEEEecCCCCeeecCCCe
Q 038604          203 --------------------KTRTVEEILTVEIKPGWKKGTKITFPEKGNQE-PGIIAADLIFIVDEKPHALYRRDGNDL  261 (315)
Q Consensus       203 --------------------~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~-~g~~~GDL~v~i~v~~h~~f~R~g~dL  261 (315)
                                          .++.+.++++|.||||+.+|++|+|+|+|++. +++.+|||||+|++++|+.|+|+|+||
T Consensus       198 C~~C~G~G~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL  277 (382)
T PRK14291        198 CPTCGGEGVLREPCSKCNGRGLVIKKETIKVRIPPGVDNGSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNL  277 (382)
T ss_pred             CCCCCCceEEccCCCCCCCCceEEeeeEEEEEeCCCCCCCCEEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCe
Confidence                                13567789999999999999999999999986 477899999999999999999999999


Q ss_pred             EEEEeeCHHHHHcCCeEEEecCCCcEEEEecCCCcCCCcEEEEcCCCcCCCC
Q 038604          262 VVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPISK  313 (315)
Q Consensus       262 ~~~~~Isl~eal~G~~~~i~tldG~~~~i~i~~~~~~g~~~~i~g~G~P~~~  313 (315)
                      +++++|||.|||+|+++.|+|+||+.+.|+||+++++|++++|+|+|||..+
T Consensus       278 ~~~~~Isl~eAl~G~~~~i~~ldG~~l~V~Ip~g~~~G~~i~i~G~G~p~~~  329 (382)
T PRK14291        278 YLDVNITVAEAVLGTELEVPLLDGKKEKVKIPPGTKEGDKIRVPGKGMPRLK  329 (382)
T ss_pred             EEEEEeeHHHHhCCCEEEEecCCCCEEEEEECCccCCCCEEEECCCCCCCCC
Confidence            9999999999999999999999998899999999999999999999999754

>PRK14295 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.5e-56  Score=426.97  Aligned_cols=272  Identities=29%  Similarity=0.462  Sum_probs=207.5

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhcc----ccccccC
Q 038604            1 MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDL----YGEEGLK   76 (315)
Q Consensus         1 m~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~----~G~~~~~   76 (315)
                      |..|||+||||+++||.+|||+|||+||++||||+|+.  .++++++|++|++||+||+||.+|+.||+    ||++++.
T Consensus         7 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~   84 (389)
T PRK14295          7 IEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKG--DAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFR   84 (389)
T ss_pred             cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCC--chhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccc
Confidence            56799999999999999999999999999999999975  35789999999999999999999999999    9988775


Q ss_pred             CCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCCCccccccccCCCCC
Q 038604           77 SGTVPTSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEELFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCS  156 (315)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~  156 (315)
                      .+...++.+++..+...  .|....+++....+. ..+.|+|+.||+++      +                        
T Consensus        85 ~~~~~~~~~~~~~~~~~--~f~~~~~~~~~~~~~-~~f~d~f~~~fg~~------~------------------------  131 (389)
T PRK14295         85 PGPGGGGGGGFNFDLGD--LFGGGAQGGGGAGGG-GGLGDVFGGLFNRG------G------------------------  131 (389)
T ss_pred             cCCCCCCCCCCCccccc--ccccccccccccccc-cchhhhhcccccCC------C------------------------
Confidence            32100000000000000  000000000000000 01334444444310      0                        


Q ss_pred             CCCCCCCcccccCCceEEEEeeehhhHhcCceeEEEEeeeEEc----CC-------------------------------
Q 038604          157 STASGGAAEFKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYD----SV-------------------------------  201 (315)
Q Consensus       157 ~~~~~~~~~~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~----g~-------------------------------  201 (315)
                           .....++++|+.+.|.|||+|+|+|++++|.+.+.+.|    |+                               
T Consensus       132 -----~~~~~~~g~di~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~  206 (389)
T PRK14295        132 -----RRTQPRRGADVESEVTLSFTEAIDGATVPLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNSGGFSLSE  206 (389)
T ss_pred             -----CCCCCCCCCCEEEEEEEEHHHHhCCceEEEEeeccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEecceEEEE
Confidence                 01123468899999999999999999999998754311    11                               


Q ss_pred             --------C-------------cEEeEEEEEEEEeCCCCCCCCEEEecCCCCCC-CCCCCCcEEEEEEecCCCCeeecCC
Q 038604          202 --------G-------------KTRTVEEILTVEIKPGWKKGTKITFPEKGNQE-PGIIAADLIFIVDEKPHALYRRDGN  259 (315)
Q Consensus       202 --------G-------------~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~-~g~~~GDL~v~i~v~~h~~f~R~g~  259 (315)
                              |             .++.+.++++|.||+|+++|++|+|+|+|++. .+..+|||+|+|++++|+.|+|+|+
T Consensus       207 ~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~  286 (389)
T PRK14295        207 PCPDCKGRGLIADDPCLVCKGSGRAKSSRTMQVRIPAGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGD  286 (389)
T ss_pred             ecCCCcceeEEeccCCCCCCCCceEeeeeEEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecC
Confidence                    1             14566789999999999999999999999985 4567899999999999999999999


Q ss_pred             CeEEEEeeCHHHHHcCCeEEEecCCCcEEEEecCCCcCCCcEEEEcCCCcCCC
Q 038604          260 DLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPIS  312 (315)
Q Consensus       260 dL~~~~~Isl~eal~G~~~~i~tldG~~~~i~i~~~~~~g~~~~i~g~G~P~~  312 (315)
                      ||+++++|||++||+|++++|+||||+++.|+||+++++|++++|+|+|||..
T Consensus       287 DL~~~~~Isl~eAl~G~~~~I~tldG~~~~v~ip~g~~~g~~iri~G~G~p~~  339 (389)
T PRK14295        287 NLTVTVPVTFPEAALGAEVRVPTLGGPPVTVKLPPGTPNGRVLRVRGKGAVRK  339 (389)
T ss_pred             CEEEEEeecHHHHhCCCeEEEECCCCCEEEEEECCccCCCcEEEECCCCcCCC
Confidence            99999999999999999999999999889999999999999999999999963

>PRK14282 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.6e-56  Score=423.44  Aligned_cols=265  Identities=32%  Similarity=0.540  Sum_probs=210.7

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCCCCCC
Q 038604            2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKSGTVP   81 (315)
Q Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~   81 (315)
                      ..|||+||||+++||.+|||+|||+||++||||+|+. ++.+|+++|++|++||++|+||.+|+.||+||++++......
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~~   81 (369)
T PRK14282          3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPE-NRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQE   81 (369)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCcc-chhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcccccccccc
Confidence            4799999999999999999999999999999999975 235689999999999999999999999999998776421100


Q ss_pred             CCCCCCCCCCCCCccccCCCCCCCCC-CCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCC
Q 038604           82 TSSTSTSASRAGQHYYHQRQHPNPSF-RFNPRDAEDIYEELFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTAS  160 (315)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  160 (315)
                      .+  +    .+++  |.      ..| .|......|+|++|||+.     ++ .    . .                   
T Consensus        82 ~~--~----~g~~--~~------~~~~~~~~~~~~d~f~~~fgg~-----~~-~----~-~-------------------  117 (369)
T PRK14282         82 TE--S----GGGF--FE------DIFKDFENIFNRDIFDIFFGER-----RT-Q----E-E-------------------  117 (369)
T ss_pred             CC--C----CCcc--cc------cccccccccccchhhhHhhccc-----CC-c----c-c-------------------
Confidence            00  0    0010  00      000 011001137889888741     00 0    0 0                   


Q ss_pred             CCCcccccCCceEEEEeeehhhHhcCceeEEEEeeeEEc----C-----------------CCc----------------
Q 038604          161 GGAAEFKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYD----S-----------------VGK----------------  203 (315)
Q Consensus       161 ~~~~~~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~----g-----------------~G~----------------  203 (315)
                       .....++++|+.+.|.|||+|+|+|++++|.+.|.+.|    |                 .|.                
T Consensus       118 -~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~  196 (369)
T PRK14282        118 -QREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSER  196 (369)
T ss_pred             -ccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeecccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEE
Confidence             00113468899999999999999999999998754311    1                 111                


Q ss_pred             -----------------------EEeEEEEEEEEeCCCCCCCCEEEecCCCCCC-CCCCCCcEEEEEEecCCCCeeecCC
Q 038604          204 -----------------------TRTVEEILTVEIKPGWKKGTKITFPEKGNQE-PGIIAADLIFIVDEKPHALYRRDGN  259 (315)
Q Consensus       204 -----------------------~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~-~g~~~GDL~v~i~v~~h~~f~R~g~  259 (315)
                                             ++.+.++++|.||||+.+|++|+|+|+|++. .+..+|||+|+|++++|+.|+|+|+
T Consensus       197 ~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~  276 (369)
T PRK14282        197 TCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVKIPAGVEDGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGS  276 (369)
T ss_pred             ECCCCCCcceeCCCCCCCCCCceeEEEEEEEEEEeCCCCCCCCEEEEecccCCCCCCCCCCCEEEEEEEecCCcEEEecC
Confidence                                   3455689999999999999999999999985 4567899999999999999999999


Q ss_pred             CeEEEEeeCHHHHHcCCeEEEecCCCcEEEEecCCCcCCCcEEEEcCCCcCCC
Q 038604          260 DLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPIS  312 (315)
Q Consensus       260 dL~~~~~Isl~eal~G~~~~i~tldG~~~~i~i~~~~~~g~~~~i~g~G~P~~  312 (315)
                      ||+++++|||.||++|+++.|+|+||+++.|+||+++++|++++|+|+|||..
T Consensus       277 DL~~~~~Isl~eAl~G~~~~i~~ldG~~i~v~Ip~g~~~g~~iri~GkG~p~~  329 (369)
T PRK14282        277 DLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIPPGTQPETVFRLKGKGLPNM  329 (369)
T ss_pred             CEEEEEEeCHHHHhCCCEEEEeCCCCcEEEEEeCCCcCCCCEEEECCCCCCCC
Confidence            99999999999999999999999999989999999999999999999999964

>PRK14301 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.5e-56  Score=425.09  Aligned_cols=258  Identities=32%  Similarity=0.576  Sum_probs=211.2

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCCCCCC
Q 038604            2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKSGTVP   81 (315)
Q Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~   81 (315)
                      ..|||+||||+++||.+|||+|||+||++||||+|++  +++|+++|++|++||+||+||.+|+.||+||++++.++.  
T Consensus         3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~--~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~~--   78 (373)
T PRK14301          3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPD--NPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNG--   78 (373)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCC--ChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccCC--
Confidence            5899999999999999999999999999999999975  367889999999999999999999999999998765321  


Q ss_pred             CCCCCCCCCCCCCccccCCCCCCCCCCCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCC
Q 038604           82 TSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEELFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTASG  161 (315)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~  161 (315)
                       ++       ++   |.+.    .. .|  ..+.|+|++|||.+.     + .    + .                    
T Consensus        79 -~~-------~g---~~~~----~~-~~--~~f~d~f~~~fg~g~-----~-~----~-~--------------------  109 (373)
T PRK14301         79 -GF-------GG---FSSA----ED-IF--SHFSDIFGDLFGFSG-----G-G----S-R--------------------  109 (373)
T ss_pred             -CC-------CC---cccc----cc-cc--cchHHHHHHHhhccC-----c-c----c-c--------------------
Confidence             00       01   1100    00 01  245788988887310     0 0    0 0                    


Q ss_pred             CCcccccCCceEEEEeeehhhHhcCceeEEEEeeeEE----cCCC-----------------------------------
Q 038604          162 GAAEFKKAPAVENLLPCSLEEIYKGAKKKMRISRNVY----DSVG-----------------------------------  202 (315)
Q Consensus       162 ~~~~~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~----~g~G-----------------------------------  202 (315)
                      +.....++.|+.+.|.|||+|+|+|+++++.+.+.+.    +|+|                                   
T Consensus       110 ~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C  189 (373)
T PRK14301        110 RGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQGFFQIAVPCPVC  189 (373)
T ss_pred             cCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcccCCCCCCcccCCccCeeEEEEEeeeEEEEEeCCCC
Confidence            0011346889999999999999999999998865432    1111                                   


Q ss_pred             -----------------cEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCC-CCCCCcEEEEEEecCCCCeeecCCCeEEE
Q 038604          203 -----------------KTRTVEEILTVEIKPGWKKGTKITFPEKGNQEP-GIIAADLIFIVDEKPHALYRRDGNDLVVG  264 (315)
Q Consensus       203 -----------------~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~-g~~~GDL~v~i~v~~h~~f~R~g~dL~~~  264 (315)
                                       .++.+.++++|.||+|+++|++|+|+|+|++.+ +..+|||+|+|++++|+.|+|+|+||+++
T Consensus       190 ~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~  269 (373)
T PRK14301        190 RGEGRVITHPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLRLRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVT  269 (373)
T ss_pred             CceeeecCCCCCCCCCCceeccceEEEEEeCCCCcCCCEEEEeccccCCCCCCCCcCEEEEEEEEECCCceeecCcEEEE
Confidence                             135567899999999999999999999999864 56789999999999999999999999999


Q ss_pred             EeeCHHHHHcCCeEEEecCCCcEEEEecCCCcCCCcEEEEcCCCcCCCC
Q 038604          265 QEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPISK  313 (315)
Q Consensus       265 ~~Isl~eal~G~~~~i~tldG~~~~i~i~~~~~~g~~~~i~g~G~P~~~  313 (315)
                      ++|||.+||+|+++.|+||||+ +.|+||+++++|++++|+|+|||..+
T Consensus       270 ~~Isl~eAl~G~~~~v~tldG~-i~v~ip~g~~~g~~~ri~g~G~p~~~  317 (373)
T PRK14301        270 QEISFVQAALGDRIEVPTLDDP-VTLDIPKGTQSGEVFRLRGKGLPYLG  317 (373)
T ss_pred             EEecHHHHhCCCeEEEecCCcc-EEEEECCCcCCCcEEEEcCCCCCCCC
Confidence            9999999999999999999998 99999999999999999999999754

>PRK14284 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2e-56  Score=426.94  Aligned_cols=275  Identities=31%  Similarity=0.519  Sum_probs=209.9

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCCCCCCC
Q 038604            3 FDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKSGTVPT   82 (315)
Q Consensus         3 ~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~   82 (315)
                      +|||+||||+++||.+|||+|||+||++||||+|++  ++.++++|++|++||++|+|+.+|+.||+||++++..+....
T Consensus         1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~--~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~~~~   78 (391)
T PRK14284          1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPG--DAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGGF   78 (391)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--chHHHHHHHHHHHHHHHhcCHHHHHHHHhccccccccccCCc
Confidence            489999999999999999999999999999999986  367899999999999999999999999999998764321000


Q ss_pred             CCCCCCCCCCCCccccCCCCCCCCCCCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCC
Q 038604           83 SSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEELFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTASGG  162 (315)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~  162 (315)
                      +.+++......+..|.+.+ + ..  |  ..+.|+|++||++...    +                 |+..       ..
T Consensus        79 ~~~g~~~~~~~~~~~~~~f-~-~~--~--~~~~d~f~~~fgg~g~----~-----------------~~~~-------~~  124 (391)
T PRK14284         79 GGAGMGNMEDALRTFMGAF-G-GE--F--GGGGSFFEGLFGGLGE----A-----------------FGMR-------GG  124 (391)
T ss_pred             CCCCcCcccchhhhccccc-c-cc--c--cccccchhhhccCccc----c-----------------cccc-------cc
Confidence            0000000000000000000 0 00  1  0124778888863100    0                 0000       00


Q ss_pred             CcccccCCceEEEEeeehhhHhcCceeEEEEeeeEEc----CC-------------------------------------
Q 038604          163 AAEFKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYD----SV-------------------------------------  201 (315)
Q Consensus       163 ~~~~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~----g~-------------------------------------  201 (315)
                      ....+++.|+.+.|.|||+|+|+|+++++.+.+.+.|    |+                                     
T Consensus       125 ~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~  204 (391)
T PRK14284        125 PAGARQGASKKVHITLSFEEAAKGVEKELLVSGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSRGFFSMASTCPECG  204 (391)
T ss_pred             CCCcCCCCCeEEEEEEEHHHHhCCeeEEEEEeeeccCCCCcccccCCCCCCeecCccCCeeEEEEEeceEEEEEECCCCC
Confidence            0113467899999999999999999999998764321    11                                     


Q ss_pred             --C-------------cEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCC-CCCCCcEEEEEEecCCCCeeecCCCeEEEE
Q 038604          202 --G-------------KTRTVEEILTVEIKPGWKKGTKITFPEKGNQEP-GIIAADLIFIVDEKPHALYRRDGNDLVVGQ  265 (315)
Q Consensus       202 --G-------------~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~-g~~~GDL~v~i~v~~h~~f~R~g~dL~~~~  265 (315)
                        |             .++.+.++++|.||||+.+|++|+|+|+|++.+ ++.+|||||+|++++|+.|+|+|+||++++
T Consensus       205 G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~  284 (391)
T PRK14284        205 GEGRVITDPCSVCRGQGRIKDKRSVHVHIPAGVDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILEL  284 (391)
T ss_pred             CCCcccCCcCCCCCCcceecceEEEEEEECCCCCCCCEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEE
Confidence              1             034567899999999999999999999999975 567899999999999999999999999999


Q ss_pred             eeCHHHHHcCCeEEEecCC-CcEEEEecCCCcCCCcEEEEcCCCcCCCC
Q 038604          266 EITLLEALTGKTLDLTTLD-GRNLMIPLTDIVKPGTEIVVPNEGMPISK  313 (315)
Q Consensus       266 ~Isl~eal~G~~~~i~tld-G~~~~i~i~~~~~~g~~~~i~g~G~P~~~  313 (315)
                      +|||++||+|+++.|+||| |..+.|+||+++++|++++|+|+|||..+
T Consensus       285 ~Isl~eAl~G~~~~v~tld~g~~i~v~Ip~g~~~g~~~~i~g~G~p~~~  333 (391)
T PRK14284        285 PIGFVDAALGMKKEIPTLLKEGTCRLTIPEGIQSGTILKVRGQGFPNVH  333 (391)
T ss_pred             EecHHHHhCCCeEEEeecCCCcEEEEEECCccCCCeEEEECCCCCCCCC
Confidence            9999999999999999999 66799999999999999999999999753

>PRK14281 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=7.1e-56  Score=423.66  Aligned_cols=276  Identities=33%  Similarity=0.613  Sum_probs=211.5

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCCCCC
Q 038604            1 MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKSGTV   80 (315)
Q Consensus         1 m~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~   80 (315)
                      |..|||+||||+++|+.+|||+|||+||++||||++++  .++|+++|++|++||++|+|+.+|+.||+||++++.....
T Consensus         1 ~~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~--~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~   78 (397)
T PRK14281          1 MKRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPD--NKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAA   78 (397)
T ss_pred             CCCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCC--chHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhccccc
Confidence            78899999999999999999999999999999999975  3568899999999999999999999999999987753210


Q ss_pred             CCCCCCCCCCCCCCccccCCCCCCCCCCCCCCChHHH---HHHhhCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCC
Q 038604           81 PTSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDI---YEELFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSS  157 (315)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~---f~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~  157 (315)
                      ..+  +        .+|.+     ..     .++.|+   |++|||++..+  .+ .    ...++.   ..|+..   .
T Consensus        79 ~~~--~--------~~~~~-----~~-----~~~~d~f~~f~~~Fgg~~~~--~~-~----~~~~~~---~~~~g~---~  125 (397)
T PRK14281         79 SGG--G--------PGYGG-----GG-----GDFNDIFSAFNDMFGGGARR--GG-G----SPFGFE---DVFGGG---G  125 (397)
T ss_pred             cCC--C--------CCCCc-----CC-----CCHHHHHHHHHHHhCCCccc--cc-c----cccccc---cccCCC---c
Confidence            000  0        00100     00     133445   45888752211  00 0    000000   001100   0


Q ss_pred             CCCCCCcccccCCceEEEEeeehhhHhcCceeEEEEeeeEEc----C----------------CCc--------------
Q 038604          158 TASGGAAEFKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYD----S----------------VGK--------------  203 (315)
Q Consensus       158 ~~~~~~~~~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~----g----------------~G~--------------  203 (315)
                      . ......+.++.|+.+.|.|||+|+|+|++++|.+.+.+.|    |                .|.              
T Consensus       126 ~-~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~  204 (397)
T PRK14281        126 R-RRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIKKQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVN  204 (397)
T ss_pred             c-cccccCCCCCCCEEEEEEeEHHHHhCCeEEEEEEEeeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEE
Confidence            0 0000112468899999999999999999999998755421    1                111              


Q ss_pred             -------------------------EEeEEEEEEEEeCCCCCCCCEEEecCCCCCCC-CCCCCcEEEEEEecCCCCeeec
Q 038604          204 -------------------------TRTVEEILTVEIKPGWKKGTKITFPEKGNQEP-GIIAADLIFIVDEKPHALYRRD  257 (315)
Q Consensus       204 -------------------------~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~-g~~~GDL~v~i~v~~h~~f~R~  257 (315)
                                               ++.++++++|.||+|+++|++|+|+|+|++.+ ++.+|||+|+|++++|+.|+|+
T Consensus       205 ~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~  284 (397)
T PRK14281        205 ITACPTCGGEGRVVKDRCPACYGEGIKQGEVTVKVTVPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRN  284 (397)
T ss_pred             EEecCCCcceeeeeCCCCCCCCCCccEecceEEEEecCCCCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEe
Confidence                                     23456799999999999999999999999965 5678999999999999999999


Q ss_pred             CCCeEEEEeeCHHHHHcCCeEEEecCCCcEEEEecCCCcCCCcEEEEcCCCcCCCC
Q 038604          258 GNDLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPISK  313 (315)
Q Consensus       258 g~dL~~~~~Isl~eal~G~~~~i~tldG~~~~i~i~~~~~~g~~~~i~g~G~P~~~  313 (315)
                      |+||+++++|||.|||+|+++.|+||||+ +.|+||+++++|++++|+|+|||..+
T Consensus       285 G~DL~~~~~Isl~eAl~G~~~~i~tldg~-i~v~ip~g~~~G~~~ri~g~G~P~~~  339 (397)
T PRK14281        285 GDDVIYNLAVSYPDLVLGTKVEVPTLDGA-VKLTIPAGTQPETMLRIPGKGIGHLR  339 (397)
T ss_pred             cCCEEEEEEecHHHHhcCCeEEeecCCcc-EEEEeCCccCCCcEEEEcCCCCCCCC
Confidence            99999999999999999999999999997 89999999999999999999999643

>PRK14294 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=3.8e-56  Score=421.90  Aligned_cols=259  Identities=34%  Similarity=0.591  Sum_probs=211.6

Q ss_pred             CC-CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCCCC
Q 038604            1 MG-FDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKSGT   79 (315)
Q Consensus         1 m~-~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~   79 (315)
                      |. .|||+||||+++|+.+|||+|||+||++||||+++.  +++++++|++|++||+||+||.+|+.||+||++++.++ 
T Consensus         1 ~~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~-   77 (366)
T PRK14294          1 MVKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPG--DKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGT-   77 (366)
T ss_pred             CCCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--chHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCC-
Confidence            53 799999999999999999999999999999999975  35788999999999999999999999999999877531 


Q ss_pred             CCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCC
Q 038604           80 VPTSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEELFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTA  159 (315)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~  159 (315)
                         +++       ++++|.      .  .|  .++.|+|++|||.+.    ++ .    + .                  
T Consensus        78 ---~~~-------~~~~~~------~--~~--~~~~d~f~~~fg~g~----~~-~----~-~------------------  109 (366)
T PRK14294         78 ---GFS-------GFSGFD------D--IF--SSFGDIFEDFFGFGG----GR-R----G-R------------------  109 (366)
T ss_pred             ---CCC-------CcCccc------c--ch--hhhhhhHHHhhccCC----Cc-C----C-c------------------
Confidence               100       000110      0  01  146789999997210    00 0    0 0                  


Q ss_pred             CCCCcccccCCceEEEEeeehhhHhcCceeEEEEeeeEEc----CCC---------------------------------
Q 038604          160 SGGAAEFKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYD----SVG---------------------------------  202 (315)
Q Consensus       160 ~~~~~~~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~----g~G---------------------------------  202 (315)
                        ......+++|+.+.|.|||+|+|+|++++|.+.+.+.|    |+|                                 
T Consensus       110 --~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~  187 (366)
T PRK14294        110 --SRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQGFFSIRTTCP  187 (366)
T ss_pred             --ccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCccccCCCCcccCCCcCCeEEEEEEeeeEEEEeeCC
Confidence              00113468899999999999999999999988754321    111                                 


Q ss_pred             -------------------cEEeEEEEEEEEeCCCCCCCCEEEecCCCCCC-CCCCCCcEEEEEEecCCCCeeecCCCeE
Q 038604          203 -------------------KTRTVEEILTVEIKPGWKKGTKITFPEKGNQE-PGIIAADLIFIVDEKPHALYRRDGNDLV  262 (315)
Q Consensus       203 -------------------~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~-~g~~~GDL~v~i~v~~h~~f~R~g~dL~  262 (315)
                                         .++.+.++++|.||+|+++|++|+|+|+|++. .++.+|||+|+|++++|+.|+|+|+||+
T Consensus       188 ~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~  267 (366)
T PRK14294        188 RCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRLRLRGEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVH  267 (366)
T ss_pred             CCCCcCeecCcCCCCCCCceEeecceeEEEecCCCCcCCcEEEEccCccCCCCCCCCCcEEEEEEEccCCcceecCCCEE
Confidence                               13556789999999999999999999999985 5677899999999999999999999999


Q ss_pred             EEEeeCHHHHHcCCeEEEecCCCcEEEEecCCCcCCCcEEEEcCCCcCCCC
Q 038604          263 VGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPISK  313 (315)
Q Consensus       263 ~~~~Isl~eal~G~~~~i~tldG~~~~i~i~~~~~~g~~~~i~g~G~P~~~  313 (315)
                      ++++|||.+||+|+++.|+||||+ +.|.||+++++|++++|+|+|||..+
T Consensus       268 ~~~~Isl~eAl~G~~~~i~tldG~-~~v~ip~g~~~g~~iri~G~G~p~~~  317 (366)
T PRK14294        268 CKVPISFVQAALGAQIEVPTLEGE-RELKIPKGTQPGDIFRFKGKGIPSLR  317 (366)
T ss_pred             EEEEeCHHHHhCCCeEEEECCCCc-EEEEECCCcCCCCEEEECCCCCCCCC
Confidence            999999999999999999999997 79999999999999999999999653

>PRK14297 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1e-55  Score=420.87  Aligned_cols=260  Identities=30%  Similarity=0.545  Sum_probs=211.7

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCCCCCC
Q 038604            2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKSGTVP   81 (315)
Q Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~   81 (315)
                      ..|||+||||+++|+.+|||+|||+||++||||+|+.  +++|+++|++|++||++|+||.+|+.||+||++++..+.  
T Consensus         3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~--~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~--   78 (380)
T PRK14297          3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKG--NKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAG--   78 (380)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--cHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccC--
Confidence            4799999999999999999999999999999999975  367899999999999999999999999999998775321  


Q ss_pred             CCCCCCCCCCCCCccccCCCCCCCCCCCCC-CChHHHHHHhhCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCC
Q 038604           82 TSSTSTSASRAGQHYYHQRQHPNPSFRFNP-RDAEDIYEELFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTAS  160 (315)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  160 (315)
                       +.+.     +++.+          +.+.. .++.|+|++|||+.  +  ++.     + .                   
T Consensus        79 -~~~~-----~~~~~----------~~~~~~~~~~d~f~~~fgg~--~--g~~-----~-~-------------------  113 (380)
T PRK14297         79 -GFGS-----GGFGG----------FDFSDMGGFGDIFDSFFGGG--F--GSS-----S-R-------------------  113 (380)
T ss_pred             -CCCC-----CCCCC----------cCcccccchhHHHHHHhccC--c--ccc-----c-c-------------------
Confidence             0000     01111          11110 24689999999841  1  000     0 0                   


Q ss_pred             CCCcccccCCceEEEEeeehhhHhcCceeEEEEeeeEEc----C-----------------CCc----------------
Q 038604          161 GGAAEFKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYD----S-----------------VGK----------------  203 (315)
Q Consensus       161 ~~~~~~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~----g-----------------~G~----------------  203 (315)
                       +....++++|+.+.|.|||+|+|+|++++|.+.+.+.|    |                 .|.                
T Consensus       114 -~~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~  192 (380)
T PRK14297        114 -RRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTT  192 (380)
T ss_pred             -ccCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEE
Confidence             00113468899999999999999999999988754321    1                 111                


Q ss_pred             -----------------------EEeEEEEEEEEeCCCCCCCCEEEecCCCCCCC-CCCCCcEEEEEEecCCCCeeecCC
Q 038604          204 -----------------------TRTVEEILTVEIKPGWKKGTKITFPEKGNQEP-GIIAADLIFIVDEKPHALYRRDGN  259 (315)
Q Consensus       204 -----------------------~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~-g~~~GDL~v~i~v~~h~~f~R~g~  259 (315)
                                             ++.+.++++|.||||+.+|++|+|+|+|++.+ +..+|||||+|++++|+.|+|+|+
T Consensus       193 ~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~I~l~g~G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~  272 (380)
T PRK14297        193 TCDKCGGSGKVIEDPCNKCHGKGKVRKNRKIKVNVPAGVDTGNVIPLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGF  272 (380)
T ss_pred             eCCCCCCCceEcCCCCCCCCCCeEEEeEeEEEEEeCCCCCCCcEEEEecCccCCCCCCCCccEEEEEEEcCCCCEEEeCC
Confidence                                   24567899999999999999999999999854 566899999999999999999999


Q ss_pred             CeEEEEeeCHHHHHcCCeEEEecCCCcEEEEecCCCcCCCcEEEEcCCCcCCC
Q 038604          260 DLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPIS  312 (315)
Q Consensus       260 dL~~~~~Isl~eal~G~~~~i~tldG~~~~i~i~~~~~~g~~~~i~g~G~P~~  312 (315)
                      ||+++++|||++||+|+++.|+||||+ +.|+||+++++|++++|+|+|||..
T Consensus       273 DL~~~~~Isl~eAl~G~~~~i~~ldg~-~~v~ip~g~~~g~~~ri~g~G~p~~  324 (380)
T PRK14297        273 DIYIDKHISFAKAALGTEIKVPTVDGE-VKYEVPAGTQPGTVFRLKGKGVPRV  324 (380)
T ss_pred             CEEEEEEeCHHHHhCCCcEEEEcCCCc-EEEEECCCcCCCCEEEEcCCCcCCC
Confidence            999999999999999999999999997 8999999999999999999999964

>PRK14299 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.6e-55  Score=404.19  Aligned_cols=250  Identities=37%  Similarity=0.642  Sum_probs=202.9

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCCCCCC
Q 038604            2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKSGTVP   81 (315)
Q Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~   81 (315)
                      ..|||+||||+++||.+|||+|||+||++||||+|++   +.++++|++|++||++|+|+.+|+.||+||++++..+...
T Consensus         3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~---~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~~~~~~~   79 (291)
T PRK14299          3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS---PGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQG   79 (291)
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---hhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccccccccC
Confidence            5899999999999999999999999999999999975   6788999999999999999999999999999865432110


Q ss_pred             CCCCCCCCCCCCCccccCCCCCCCCCCCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCC
Q 038604           82 TSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEELFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTASG  161 (315)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~  161 (315)
                      +..++     +++.+|.       ++.+  .++.|+|++|||+...+  ++       ..      +.|..         
T Consensus        80 ~~~~~-----~~~~~~~-------~~~~--~~~~d~f~~~fgg~~~~--~~-------~g------~~~~~---------  121 (291)
T PRK14299         80 PPPGP-----PGGGDFS-------GFNV--GDFSDFFQQLFGGRGGF--GG-------FG------DLFGS---------  121 (291)
T ss_pred             CCCCC-----CCCCCcc-------ccCc--CCHHHHHHHHhCCCCCC--CC-------cc------ccccc---------
Confidence            00000     0111111       1111  36789999999842111  00       00      00100         


Q ss_pred             CCcccccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCCCCCCCc
Q 038604          162 GAAEFKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPGIIAAD  241 (315)
Q Consensus       162 ~~~~~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~g~~~GD  241 (315)
                      .....+++.|+++.+.|||+|++.||++++.+.       |      ++++|+||||+++|++|+|+|+|++.     ||
T Consensus       122 ~~~~~~~g~dl~~~l~isL~ea~~G~~~~i~l~-------g------~~~~V~Ip~G~~~G~~ir~~g~G~~~-----GD  183 (291)
T PRK14299        122 VGRRARKGRDLEAELPLTLEEAYRGGEKVVEVA-------G------ERLSVRIPPGVREGQVIRLAGKGRQG-----GD  183 (291)
T ss_pred             ccCCCCCCCCEEEEEEecHHHHhCCCeEEEeeC-------C------EEEEEecCCCcCCCcEEEECCCCCCC-----CC
Confidence            001235688999999999999999999998763       4      58999999999999999999999963     99


Q ss_pred             EEEEEEecCCCCeeecCCCeEEEEeeCHHHHHcCCeEEEecCCCcEEEEecCCCcCCCcEEEEcCCCcCC
Q 038604          242 LIFIVDEKPHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPI  311 (315)
Q Consensus       242 L~v~i~v~~h~~f~R~g~dL~~~~~Isl~eal~G~~~~i~tldG~~~~i~i~~~~~~g~~~~i~g~G~P~  311 (315)
                      |+|+|++++|+.|+|+|+||+++++|||.+||||+++.|+||||+ +.|+||+++++|++++|+|+|||.
T Consensus       184 L~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~v~tldG~-~~v~ip~~~~~g~~~rl~g~G~p~  252 (291)
T PRK14299        184 LYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVMTLDGP-VEVTIPPRTQAGRKLRLKGKGWPR  252 (291)
T ss_pred             EEEEEEEcCCCCeEEECCEEEEEEecCHHHHhCCCEEEEECCCCC-EEEEeCCCcCCCCEEEECCCCCCC
Confidence            999999999999999999999999999999999999999999997 899999999999999999999995

>PRK10767 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.2e-55  Score=417.85  Aligned_cols=256  Identities=36%  Similarity=0.599  Sum_probs=208.9

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCCCCCC
Q 038604            2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKSGTVP   81 (315)
Q Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~   81 (315)
                      ..|||+||||+++||.+|||+|||+||++||||+|+.  .++|+++|++|++||++|+|+.+|+.||+||++++..+.. 
T Consensus         3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~--~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~~-   79 (371)
T PRK10767          3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPG--DKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGG-   79 (371)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--cHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCCC-
Confidence            4799999999999999999999999999999999975  2568899999999999999999999999999987653210 


Q ss_pred             CCCCCCCCCCCCCccccCCCCCCCCCCCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCC
Q 038604           82 TSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEELFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTASG  161 (315)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~  161 (315)
                       +        ++++++       .+  |. ..+.++|+.|||++     ++ .                           
T Consensus        80 -~--------~~~~~~-------~~--~~-~~f~~~f~~~fgg~-----~~-~---------------------------  107 (371)
T PRK10767         80 -G--------GGFGGG-------GG--FG-DIFGDIFGDIFGGG-----RG-G---------------------------  107 (371)
T ss_pred             -C--------CCCCCc-------cc--cc-cchhhhhhhhccCC-----cc-c---------------------------
Confidence             0        011000       01  11 12567777777631     00 0                           


Q ss_pred             CCcccccCCceEEEEeeehhhHhcCceeEEEEeeeEE----cCCC-----------------------------------
Q 038604          162 GAAEFKKAPAVENLLPCSLEEIYKGAKKKMRISRNVY----DSVG-----------------------------------  202 (315)
Q Consensus       162 ~~~~~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~----~g~G-----------------------------------  202 (315)
                      .....+++.|+.+.|.|||+|+|+|++++|.+.+.+.    +|+|                                   
T Consensus       108 ~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C  187 (371)
T PRK10767        108 GRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQGFFTVQQTCPTC  187 (371)
T ss_pred             cCCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCcccCCCCCCccCCCCCCeeEEEEeeceEEEEEeCCCC
Confidence            0011346889999999999999999999998865432    1111                                   


Q ss_pred             -----------------cEEeEEEEEEEEeCCCCCCCCEEEecCCCCCC-CCCCCCcEEEEEEecCCCCeeecCCCeEEE
Q 038604          203 -----------------KTRTVEEILTVEIKPGWKKGTKITFPEKGNQE-PGIIAADLIFIVDEKPHALYRRDGNDLVVG  264 (315)
Q Consensus       203 -----------------~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~-~g~~~GDL~v~i~v~~h~~f~R~g~dL~~~  264 (315)
                                       .++.+.++++|.||||+.+|++|+|+|+|++. ++..+|||+|+|++++|+.|+|+|+||+++
T Consensus       188 ~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~  267 (371)
T PRK10767        188 HGRGKIIKDPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRIRLSGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCE  267 (371)
T ss_pred             CCceeECCCCCCCCCCCceEeeeeeEEEecCCCCCCCcEEEEecCccCCCCCCCCcCEEEEEEEeeCCCEEEecCCEEEE
Confidence                             13566789999999999999999999999984 566789999999999999999999999999


Q ss_pred             EeeCHHHHHcCCeEEEecCCCcEEEEecCCCcCCCcEEEEcCCCcCCCC
Q 038604          265 QEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPISK  313 (315)
Q Consensus       265 ~~Isl~eal~G~~~~i~tldG~~~~i~i~~~~~~g~~~~i~g~G~P~~~  313 (315)
                      +.|||++||+|+++.|+||||. +.|+||+++++|++++|+|+|||..+
T Consensus       268 ~~Isl~eAl~G~~~~i~~ldG~-i~v~ip~g~~~g~~~~i~g~G~p~~~  315 (371)
T PRK10767        268 VPISFTTAALGGEIEVPTLDGR-VKLKIPEGTQTGKLFRLRGKGVKSVR  315 (371)
T ss_pred             EEeCHHHHhCCCeEEEecCCCc-EEEEeCCCCCCCCEEEECCCCcCCCC
Confidence            9999999999999999999995 99999999999999999999999753

>PRK14290 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=3.3e-55  Score=415.36  Aligned_cols=264  Identities=33%  Similarity=0.553  Sum_probs=212.6

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCCCCC
Q 038604            1 MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKSGTV   80 (315)
Q Consensus         1 m~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~   80 (315)
                      |..|||+||||+++||.+|||+|||+||++||||+++. +.++|.++|++|++||++|+|+.+|+.||+||+.++..+  
T Consensus         1 m~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~--   77 (365)
T PRK14290          1 MAKDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPG-NKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAG--   77 (365)
T ss_pred             CCCChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-chhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccC--
Confidence            77899999999999999999999999999999999976 234789999999999999999999999999999866421  


Q ss_pred             CCCCCCCCCCCCCCccccCCCCCCCCCCCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCC
Q 038604           81 PTSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEELFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTAS  160 (315)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  160 (315)
                        + +++     ++.+|       ..  +  .++.|+|++|||+.  +  ++      .         .|+..  +    
T Consensus        78 --~-~~~-----~~~~~-------~~--~--~~~~d~f~~~fg~~--~--~~------~---------~~~~~--~----  113 (365)
T PRK14290         78 --G-SNF-----NWDNF-------TH--F--SDINDIFNQIFGGN--F--GS------D---------FFSGF--G----  113 (365)
T ss_pred             --C-CCc-----ccccc-------cc--c--cchhHHHHHHhcCc--c--cc------c---------ccccc--c----
Confidence              0 000     00001       00  1  25789999999841  1  00      0         00000  0    


Q ss_pred             CCCcccccCCceEEEEeeehhhHhcCceeEEEEeeeEEc----C----------------CC------------------
Q 038604          161 GGAAEFKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYD----S----------------VG------------------  202 (315)
Q Consensus       161 ~~~~~~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~----g----------------~G------------------  202 (315)
                      ......++++|+.+.|.|||+|+|+|++++|.+.+.+.|    |                .|                  
T Consensus       114 ~~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~  193 (365)
T PRK14290        114 NQQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQGFFRMVTVTT  193 (365)
T ss_pred             cccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCccccCCCCCCccCCCCCCcCEEEEEeccCeEEEEEEEe
Confidence            001112347899999999999999999999988654321    1                11                  


Q ss_pred             ---------------------cEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCCCCCCCcEEEEEEecCCCCeeecCCCe
Q 038604          203 ---------------------KTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPGIIAADLIFIVDEKPHALYRRDGNDL  261 (315)
Q Consensus       203 ---------------------~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~g~~~GDL~v~i~v~~h~~f~R~g~dL  261 (315)
                                           .++.+.++++|.||||+.+|++|+|+|+|+. +++.+|||||+|++++|+.|+|+|+||
T Consensus       194 C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~-~~~~~GDL~v~v~v~~h~~F~R~G~DL  272 (365)
T PRK14290        194 CRTCGGRGRIPEEKCPRCNGTGTVVVNEDISVKIPKGATDNLRLRVKGKGQS-YGGRTGDLYVVLRVNNDPNIQRINDDL  272 (365)
T ss_pred             CCCCCCceeEccCCCCCCCCceeEEEeeEEEEEECCCCCCCcEEEEccccCC-CCCCCCCEEEEEEEcCCCCEEEecCCE
Confidence                                 1355678999999999999999999999996 678899999999999999999999999


Q ss_pred             EEEEeeCHHHHHcCCeEEEecCCCcEEEEecCCCcCCCcEEEEcCCCcCCCC
Q 038604          262 VVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPISK  313 (315)
Q Consensus       262 ~~~~~Isl~eal~G~~~~i~tldG~~~~i~i~~~~~~g~~~~i~g~G~P~~~  313 (315)
                      +++++|||.+||+|+++.|+|++|+ +.|+||+++++|++++|+|+|||..+
T Consensus       273 ~~~~~Isl~eAl~G~~~~I~~~~g~-i~V~Ip~g~~~g~~iri~g~G~p~~~  323 (365)
T PRK14290        273 YVDQKINFPQAALGGEIEIKLFREK-YNLKIPEGTQPGEVLKIKGAGMPHLN  323 (365)
T ss_pred             EEEEEeCHHHHhCCCEEEEEcCCce-EEEEECCccCCCcEEEECCCCCCCCC
Confidence            9999999999999999999999996 99999999999999999999999643

>PRK14300 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=7.2e-55  Score=413.73  Aligned_cols=262  Identities=30%  Similarity=0.522  Sum_probs=210.2

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCCCCC
Q 038604            1 MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKSGTV   80 (315)
Q Consensus         1 m~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~   80 (315)
                      |..|||+||||+++||.+|||+|||+||++||||+++.   +.++++|++|++||++|+|+.+|+.||+||++++.....
T Consensus         1 ~~~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~---~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~   77 (372)
T PRK14300          1 MSQDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDA---KDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQS   77 (372)
T ss_pred             CCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---cCHHHHHHHHHHHHHHhhhHhHhhHHHhccccccccccc
Confidence            78999999999999999999999999999999999975   568889999999999999999999999999987653210


Q ss_pred             CCCCCCCCCCCCCCccccCCCCCCCCCCCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCC
Q 038604           81 PTSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEELFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTAS  160 (315)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  160 (315)
                      .++  .     +++++|            . .++.++|++||+..  |  ++ +    + .        ..         
T Consensus        78 ~~~--~-----g~~~~~------------~-~~~~~~f~~~f~~~--~--gg-~----~-~--------~~---------  110 (372)
T PRK14300         78 RGG--G-----GNHGGF------------H-PDINDIFGDFFSDF--M--GG-S----R-R--------SR---------  110 (372)
T ss_pred             cCC--C-----CCCCcc------------c-cchhhhHHHHHHhh--c--CC-C----C-C--------CC---------
Confidence            000  0     000011            1 12345666666520  1  00 0    0 0        00         


Q ss_pred             CCCcccccCCceEEEEeeehhhHhcCceeEEEEeeeEEc----CCC----------------------------------
Q 038604          161 GGAAEFKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYD----SVG----------------------------------  202 (315)
Q Consensus       161 ~~~~~~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~----g~G----------------------------------  202 (315)
                       ....+.++.|+.+.|.|||+|+|+|++++|.+.+.+.|    |+|                                  
T Consensus       111 -~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~  189 (372)
T PRK14300        111 -PTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQGFFTIEQACHK  189 (372)
T ss_pred             -CCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCcccCCCCCCccCCCccCeEEEEEeeceEEEEEeCCC
Confidence             00012467899999999999999999999998765322    211                                  


Q ss_pred             ------------------cEEeEEEEEEEEeCCCCCCCCEEEecCCCCCC-CCCCCCcEEEEEEecCCCCeeecCCCeEE
Q 038604          203 ------------------KTRTVEEILTVEIKPGWKKGTKITFPEKGNQE-PGIIAADLIFIVDEKPHALYRRDGNDLVV  263 (315)
Q Consensus       203 ------------------~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~-~g~~~GDL~v~i~v~~h~~f~R~g~dL~~  263 (315)
                                        .++.+.++++|.||+|+++|++|+|+|+|++. ++..+|||+|+|++++|+.|+|+|+||++
T Consensus       190 C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~  269 (372)
T PRK14300        190 CQGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIRHTGEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHC  269 (372)
T ss_pred             CCccceEeCCCCCCCCCceEEEeeEEEEEEECCCCCCCcEEEEeccccCCCCCCCCCCEEEEEEECCCCCeEEecCCEEE
Confidence                              03567789999999999999999999999985 56778999999999999999999999999


Q ss_pred             EEeeCHHHHHcCCeEEEecCCCcEEEEecCCCcCCCcEEEEcCCCcCCCC
Q 038604          264 GQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPISK  313 (315)
Q Consensus       264 ~~~Isl~eal~G~~~~i~tldG~~~~i~i~~~~~~g~~~~i~g~G~P~~~  313 (315)
                      +++|+|++||+|+++.|+||||+.+.|+||+++++|++++|+|+|||..+
T Consensus       270 ~~~Isl~~Al~G~~~~i~~ldg~~i~v~Ip~g~~~g~~iri~g~G~p~~~  319 (372)
T PRK14300        270 KLPISFVNAALGGEIEVPVIEGGKVNLTIPAGTQNGDQLRLRSKGMSKMR  319 (372)
T ss_pred             EEecCHHHHhCCCEEEEecCCCCEEEEEECCccCCCcEEEECCCCCCCCC
Confidence            99999999999999999999998899999999999999999999999753

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=100.00  E-value=8.3e-54  Score=396.97  Aligned_cols=258  Identities=27%  Similarity=0.425  Sum_probs=212.1

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCCCCC
Q 038604            1 MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKSGTV   80 (315)
Q Consensus         1 m~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~   80 (315)
                      -..|||+||||+++||.+|||+|||+||++||||+++.   +.+.++|++|++||++|+|+.+|+.||+||......+..
T Consensus         2 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~---~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~~~~~~~~   78 (306)
T PRK10266          2 ELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE---PDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFN   78 (306)
T ss_pred             CcCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccCcccc
Confidence            03799999999999999999999999999999999875   578999999999999999999999999998642110100


Q ss_pred             CCCCCCCCCCCCCCccccCCCCCCCCCCCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCC
Q 038604           81 PTSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEELFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTAS  160 (315)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  160 (315)
                      . +  .      +   ++    ++..  +...++.++|+.|||+.     ++..                          
T Consensus        79 ~-~--~------~---~~----~~~~--~~~~~~~~~f~~~~g~~-----~~~~--------------------------  109 (306)
T PRK10266         79 R-Q--F------Q---HG----DGQS--FNAEDFDDIFSSIFGQH-----ARQS--------------------------  109 (306)
T ss_pred             c-c--c------c---cC----CCCC--CCCCCHHHHHHHHhCCC-----CCCC--------------------------
Confidence            0 0  0      0   00    0001  11236889999999841     0000                          


Q ss_pred             CCCcccccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeE-EEEEEEEeCCCCCCCCEEEecCCCCCCC-CCC
Q 038604          161 GGAAEFKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTV-EEILTVEIKPGWKKGTKITFPEKGNQEP-GII  238 (315)
Q Consensus       161 ~~~~~~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~-~~~~~V~Ip~G~~~G~~i~~~g~G~~~~-g~~  238 (315)
                       .....+++.|+.+.+.|||+|++.||.+++.+.+.+|++.|.+..+ .++++|.||+|+++|++|+|+|+|++.+ +..
T Consensus       110 -~~~~~~kg~di~~~v~isLee~~~G~~k~i~~~~~~~~g~G~~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~  188 (306)
T PRK10266        110 -RQRPAARGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGP  188 (306)
T ss_pred             -CCCCCCCCCceEEEEEEEHHHhcCCceEEEEEecccccCCCeEEEeeeEEEEEEECCCCcCCcEEEEecCCcCCCCCCC
Confidence             0011346789999999999999999999999999999877743222 3689999999999999999999999854 567


Q ss_pred             CCcEEEEEEecCCCCeeecCCCeEEEEeeCHHHHHcCCeEEEecCCCcEEEEecCCCcCCCcEEEEcCCCcCCC
Q 038604          239 AADLIFIVDEKPHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPIS  312 (315)
Q Consensus       239 ~GDL~v~i~v~~h~~f~R~g~dL~~~~~Isl~eal~G~~~~i~tldG~~~~i~i~~~~~~g~~~~i~g~G~P~~  312 (315)
                      +|||+|+|+++||+.|+|+|+||+++++|||++|++|+++.|+|++|+ +.|+||+++++|++++|+|+|||..
T Consensus       189 ~GDl~v~i~v~ph~~f~r~g~DL~~~~~Isl~~al~G~~~~i~~~~g~-v~v~ip~g~~~g~~~ri~g~G~p~~  261 (306)
T PRK10266        189 NGDLWLVIHIAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTVPTLKES-ILLTIPPGSQAGQRLRVKGKGLVSK  261 (306)
T ss_pred             CccEEEEEEEcCCCCeEEeCCceEEEEecCHHHHhCCCEEEeeCCCcc-EEEEeCCCcCCCCEEEECCCCCCCC
Confidence            899999999999999999999999999999999999999999999998 8999999999999999999999964

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=100.00  E-value=6.3e-54  Score=405.78  Aligned_cols=259  Identities=34%  Similarity=0.606  Sum_probs=210.5

Q ss_pred             CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCCCCCCCC
Q 038604            4 DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKSGTVPTS   83 (315)
Q Consensus         4 ~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~   83 (315)
                      |||+||||+++|+.+|||+|||+||++||||+++.   +++.++|++|++||++|+|+.+|+.||+||++++..+..  +
T Consensus         1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~---~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~--~   75 (354)
T TIGR02349         1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD---KEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGG--G   75 (354)
T ss_pred             ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC---ccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCc--C
Confidence            79999999999999999999999999999999974   668899999999999999999999999999987653210  0


Q ss_pred             CCCCCCCCCCCccccCCCCCCCCCCCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCC
Q 038604           84 STSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEELFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTASGGA  163 (315)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~  163 (315)
                       .+     +++.++..     .  .|  .++.|+|++|||+..     +.     +..                    ..
T Consensus        76 -~~-----~~~~~~~~-----~--~~--~~~~~~f~~~fg~~~-----g~-----~~~--------------------~~  110 (354)
T TIGR02349        76 -GG-----GGFNGFDI-----G--FF--GDFGDIFGDFFGGGG-----GS-----GRR--------------------RR  110 (354)
T ss_pred             -CC-----CCcCCccc-----c--Cc--CchhhhHHHHhccCc-----cc-----Ccc--------------------cc
Confidence             00     01111100     0  12  246799999998420     00     000                    01


Q ss_pred             cccccCCceEEEEeeehhhHhcCceeEEEEeeeEE----cCCC-------------------------------------
Q 038604          164 AEFKKAPAVENLLPCSLEEIYKGAKKKMRISRNVY----DSVG-------------------------------------  202 (315)
Q Consensus       164 ~~~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~----~g~G-------------------------------------  202 (315)
                      ...++++|+.+.|.|||+|+|+|+++++.+.+.+.    +|+|                                     
T Consensus       111 ~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~  190 (354)
T TIGR02349       111 SGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCP  190 (354)
T ss_pred             CCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecC
Confidence            12356889999999999999999999998875532    1211                                     


Q ss_pred             -------------------cEEeEEEEEEEEeCCCCCCCCEEEecCCCCCC-CCCCCCcEEEEEEecCCCCeeecCCCeE
Q 038604          203 -------------------KTRTVEEILTVEIKPGWKKGTKITFPEKGNQE-PGIIAADLIFIVDEKPHALYRRDGNDLV  262 (315)
Q Consensus       203 -------------------~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~-~g~~~GDL~v~i~v~~h~~f~R~g~dL~  262 (315)
                                         .++.+.++++|.||+|+++|++|+|+|+|++. .+..+|||+|+|++++|+.|+|+|+||+
T Consensus       191 ~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~  270 (354)
T TIGR02349       191 TCGGEGKIIKEPCSTCKGKGRVKERKTITVKIPAGVDTGQRLRVSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLY  270 (354)
T ss_pred             CCCCcceecCCCCCCCCCCcEecccceEEEEECCCCCCCCEEEEecCccCCCCCCCCCCEEEEEEEecCcceEEecCCEE
Confidence                               13456689999999999999999999999985 4567899999999999999999999999


Q ss_pred             EEEeeCHHHHHcCCeEEEecCCCcEEEEecCCCcCCCcEEEEcCCCcCCCC
Q 038604          263 VGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPISK  313 (315)
Q Consensus       263 ~~~~Isl~eal~G~~~~i~tldG~~~~i~i~~~~~~g~~~~i~g~G~P~~~  313 (315)
                      +++.|||+|||+|+++.|+|||| ++.|+||+++++|++++|+|+|||..+
T Consensus       271 ~~~~isl~eAl~G~~~~i~~ldG-~i~v~ip~g~~~g~~~~i~g~G~p~~~  320 (354)
T TIGR02349       271 IEVPISFTQAILGGEIEVPTLDG-DVKLKIPAGTQSGTVFRLKGKGVPRLR  320 (354)
T ss_pred             EEEEeCHHHHhCCCeEEEecCCc-eEEEEECCcccCCcEEEECCCCcCCCC
Confidence            99999999999999999999999 599999999999999999999999754

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14283 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.2e-53  Score=406.39  Aligned_cols=256  Identities=30%  Similarity=0.533  Sum_probs=202.5

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCCCCCC
Q 038604            2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKSGTVP   81 (315)
Q Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~   81 (315)
                      ..|||+||||+++||.+|||+|||+||++||||+|++   ++|+++|++|++||++|+|+.+|++||+||++++......
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~---~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~~~~~   80 (378)
T PRK14283          4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE---EGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGFSQE   80 (378)
T ss_pred             cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHhchhHHHHHHhhhccccccccccc
Confidence            4799999999999999999999999999999999975   6789999999999999999999999999999876421000


Q ss_pred             CCCCCCCCCCCCCc-cccCCCCCCCCCCCCCCChHHHHHHh-hCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCC
Q 038604           82 TSSTSTSASRAGQH-YYHQRQHPNPSFRFNPRDAEDIYEEL-FGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTA  159 (315)
Q Consensus        82 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~f~~~-fg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~  159 (315)
                      +.++.     .++. .|+       .  |. .++.++|..| |++.                                  
T Consensus        81 ~~~~~-----~~~~~~~~-------~--~~-~~~~~~f~~~~fgg~----------------------------------  111 (378)
T PRK14283         81 DIFNN-----INFEDIFQ-------G--FG-FGIGNIFDMFGFGGG----------------------------------  111 (378)
T ss_pred             ccccc-----cCcccccc-------c--cc-cchhhhccccccCCC----------------------------------
Confidence            00000     0000 000       0  00 0122333332 2210                                  


Q ss_pred             CCCCcccccCCceEEEEeeehhhHhcCceeEEEEeeeEEc----CC-----------------Cc---------------
Q 038604          160 SGGAAEFKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYD----SV-----------------GK---------------  203 (315)
Q Consensus       160 ~~~~~~~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~----g~-----------------G~---------------  203 (315)
                        +...+.++.|+.+.|.|||+|+|+|+++++.+.+.+.|    |+                 |.               
T Consensus       112 --~~~~~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~  189 (378)
T PRK14283        112 --SRHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNV  189 (378)
T ss_pred             --CCCCccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEE
Confidence              00112467899999999999999999999988765321    11                 10               


Q ss_pred             ------------------------EEeEEEEEEEEeCCCCCCCCEEEecCCCCCC-CCCCCCcEEEEEEecCCCCeeecC
Q 038604          204 ------------------------TRTVEEILTVEIKPGWKKGTKITFPEKGNQE-PGIIAADLIFIVDEKPHALYRRDG  258 (315)
Q Consensus       204 ------------------------~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~-~g~~~GDL~v~i~v~~h~~f~R~g  258 (315)
                                              ++.+.++++|.||||+++|++|+|+|+|++. .+..+|||+|+|++++|+.|+|+|
T Consensus       190 ~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G  269 (378)
T PRK14283        190 TTCPDCQGEGKIVEKPCSNCHGKGVVRETKTISVKIPAGVETGSRLRVSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREG  269 (378)
T ss_pred             EECCCCCccceecCCCCCCCCCceeeccceeEEEEECCCCCCCcEEEEeccccCCCCCCCCccEEEEEEEEcCCCEEEec
Confidence                                    2445688999999999999999999999985 356789999999999999999999


Q ss_pred             CCeEEEEeeCHHHHHcCCeEEEecCCCcEEEEecCCCcCCCcEEEEcCCCcCCC
Q 038604          259 NDLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPIS  312 (315)
Q Consensus       259 ~dL~~~~~Isl~eal~G~~~~i~tldG~~~~i~i~~~~~~g~~~~i~g~G~P~~  312 (315)
                      +||+++++|||.+|++|+++.|+|||| ++.|+||+++++|++++|+|+|||..
T Consensus       270 ~DL~~~~~Isl~eAl~G~~~~i~tldG-~i~v~ip~g~~~g~~~ri~g~G~p~~  322 (378)
T PRK14283        270 ANLYYEKPISFVQAALGDTVDVPTIDG-PVELKIPAGTQSGTTFRLKGHGMPSL  322 (378)
T ss_pred             CCEEEEEecCHHHHhcCCeEEEEcCCc-eEEEEeCCCCCCCCEEEECCCCCCCC
Confidence            999999999999999999999999999 59999999999999999999999964

>PRK14293 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.3e-53  Score=403.97  Aligned_cols=259  Identities=32%  Similarity=0.546  Sum_probs=209.8

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCCCCC
Q 038604            1 MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKSGTV   80 (315)
Q Consensus         1 m~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~   80 (315)
                      |..|||+||||+++||.+|||+|||+||++||||+|+.   +.++++|++|++||++|+||.+|+.||.||++++.++. 
T Consensus         1 ~~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~---~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~~-   76 (374)
T PRK14293          1 MAADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE---PGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAA-   76 (374)
T ss_pred             CCCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC---cCHHHHHHHHHHHHHHHhchHHHHHHhhccccccccCC-
Confidence            78899999999999999999999999999999999975   56889999999999999999999999999988764210 


Q ss_pred             CCCCCCCCCCCCCCccccCCCCCCCCCCCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCC
Q 038604           81 PTSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEELFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTAS  160 (315)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  160 (315)
                        ++++          +       .+  +  .++.|+|++||++   +  ++.+    + .+       +.         
T Consensus        77 --~~~~----------~-------~~--~--~~~~d~f~~~fg~---~--~~~~----~-~~-------~~---------  107 (374)
T PRK14293         77 --GFPD----------M-------GD--M--GGFADIFETFFSG---F--GGAG----G-QG-------GR---------  107 (374)
T ss_pred             --CcCC----------c-------cc--c--cchHHHHHHHhcc---c--CCCC----C-CC-------cc---------
Confidence              0000          0       00  1  1357899999973   1  0000    0 00       00         


Q ss_pred             CCCcccccCCceEEEEeeehhhHhcCceeEEEEeeeEE----cC-----------------CCc----------------
Q 038604          161 GGAAEFKKAPAVENLLPCSLEEIYKGAKKKMRISRNVY----DS-----------------VGK----------------  203 (315)
Q Consensus       161 ~~~~~~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~----~g-----------------~G~----------------  203 (315)
                      .+.....+++++.+.|.|||+|+|+|+++++.+.+.+.    .|                 .|.                
T Consensus       108 ~~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~  187 (374)
T PRK14293        108 RRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVS  187 (374)
T ss_pred             ccccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCcceEEEEe
Confidence            00111346789999999999999999999998875431    11                 111                


Q ss_pred             -----------------------EEeEEEEEEEEeCCCCCCCCEEEecCCCCCC-CCCCCCcEEEEEEecCCCCeeecCC
Q 038604          204 -----------------------TRTVEEILTVEIKPGWKKGTKITFPEKGNQE-PGIIAADLIFIVDEKPHALYRRDGN  259 (315)
Q Consensus       204 -----------------------~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~-~g~~~GDL~v~i~v~~h~~f~R~g~  259 (315)
                                             ++.+.++++|.||||+++|++|+|+|+|++. ++..+|||+|+|++++|+.|+|+|+
T Consensus       188 ~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~IppG~~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~  267 (374)
T PRK14293        188 ECPTCNGTGQVIEDPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVSGEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGI  267 (374)
T ss_pred             eCCCCCcceeEeccCCCCCCCCcccccceEEEEEeCCCCCCCCEEEEccCccCCCCCCCCcCEEEEEEEeCCCccChhhh
Confidence                                   2345578899999999999999999999985 4566899999999999999999999


Q ss_pred             CeEEEEeeCHHHHHcCCeEEEecCCCcEEEEecCCCcCCCcEEEEcCCCcCCCC
Q 038604          260 DLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPISK  313 (315)
Q Consensus       260 dL~~~~~Isl~eal~G~~~~i~tldG~~~~i~i~~~~~~g~~~~i~g~G~P~~~  313 (315)
                      ||+++++|||.|||+|+++.|+||||+ +.|+||+++++|++++|+|+|||..+
T Consensus       268 DL~~~~~Isl~eAl~G~~~~i~~ldG~-~~i~ip~~~~~g~~~ri~g~G~p~~~  320 (374)
T PRK14293        268 NILSEIKISYLQAILGDTLEVDTVDGP-VELTIPAGTQPNTVLTLENKGVPRLG  320 (374)
T ss_pred             ceEEEeccCHHHHhCCCEEEecCCCCC-EEEEeCCCCCCCCEEEECCCCCCCCC
Confidence            999999999999999999999999997 89999999999999999999999754

>PRK14292 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=9.2e-53  Score=399.82  Aligned_cols=254  Identities=31%  Similarity=0.504  Sum_probs=208.1

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCCCCCC
Q 038604            2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKSGTVP   81 (315)
Q Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~   81 (315)
                      ++|||+||||+++||.++||+|||+||++||||++++   +++.++|++|++||++|+||.+|+.||+||+++..+.   
T Consensus         1 ~~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~---~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~---   74 (371)
T PRK14292          1 MMDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE---KGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGM---   74 (371)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC---hhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccc---
Confidence            4699999999999999999999999999999999975   6789999999999999999999999999998753210   


Q ss_pred             CCCCCCCCCCCCCccccCCCCCCCCCCCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCC
Q 038604           82 TSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEELFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTASG  161 (315)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~  161 (315)
                       + ++     ++   |       .++.|   ++.|+|++|||+. .+  ++      .          +           
T Consensus        75 -~-~~-----~~---~-------~~~~~---d~~d~f~~~fg~~-~~--~~------~----------~-----------  104 (371)
T PRK14292         75 -P-GG-----DP---F-------GGMGF---DPMDIFEQLFGGA-GF--GG------G----------R-----------  104 (371)
T ss_pred             -c-CC-----cc---c-------CccCC---ChHHHHHHhhCCC-Cc--CC------C----------C-----------
Confidence             0 00     00   1       01112   5679999999842 11  00      0          0           


Q ss_pred             CCcccccCCceEEEEeeehhhHhcCceeEEEEeeeEEc----CC------------------Cc----------------
Q 038604          162 GAAEFKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYD----SV------------------GK----------------  203 (315)
Q Consensus       162 ~~~~~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~----g~------------------G~----------------  203 (315)
                      ......++.|+.+.+.|||+|+++|+++++.+.+.+.|    |+                  |.                
T Consensus       105 ~~~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~  184 (371)
T PRK14292        105 GRRGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQ  184 (371)
T ss_pred             CcccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEee
Confidence            00113468899999999999999999999998764321    11                  10                


Q ss_pred             -----------------------EEeEEEEEEEEeCCCCCCCCEEEecCCCCCCCCCCCCcEEEEEEecCCCCeeecCCC
Q 038604          204 -----------------------TRTVEEILTVEIKPGWKKGTKITFPEKGNQEPGIIAADLIFIVDEKPHALYRRDGND  260 (315)
Q Consensus       204 -----------------------~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~g~~~GDL~v~i~v~~h~~f~R~g~d  260 (315)
                                             ++.+.++++|.||+|+.+|++|+|+|+|++.+++. |||||+|++++|+.|+|+|+|
T Consensus       185 ~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~G~G~~~~~~~-GDL~v~i~v~~h~~f~r~g~d  263 (371)
T PRK14292        185 PCPTCRGEGQIITDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVAGMGNEGPGGN-GDLYVHIEMEPHPELRREQEH  263 (371)
T ss_pred             ecCCCcccceecCCCCCCCCCceEEeecceEEEEECCCCCCCcEEEEecCcCCCCCCC-CCEEEEEEEecCCccccchhc
Confidence                                   23456789999999999999999999999976665 999999999999999999999


Q ss_pred             eEEEEeeCHHHHHcCCeEEEecCCCcEEEEecCCCcCCCcEEEEcCCCcCCCC
Q 038604          261 LVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPISK  313 (315)
Q Consensus       261 L~~~~~Isl~eal~G~~~~i~tldG~~~~i~i~~~~~~g~~~~i~g~G~P~~~  313 (315)
                      |+++++|+|.+||+|+++.|+||||+ +.|+||+++++|++++|+|+|||..+
T Consensus       264 L~~~~~isl~eAl~G~~~~i~tldG~-~~v~ip~g~~~g~~~~i~g~G~p~~~  315 (371)
T PRK14292        264 LIYEARIGFAKAALGGQITVPTLDGP-QVIEVKPGTQHGDLHRLRGQGMPRLQ  315 (371)
T ss_pred             eeEEeccCHHHHhCCCeEEEECCCCC-EEEecCCCcCCCcEEEECCCCCCCCC
Confidence            99999999999999999999999998 58999999999999999999999753

>PRK14289 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=7.6e-52  Score=395.24  Aligned_cols=263  Identities=34%  Similarity=0.611  Sum_probs=206.9

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCCCCCC
Q 038604            2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKSGTVP   81 (315)
Q Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~   81 (315)
                      ..|||+||||+++|+.+|||+|||+||++||||+|+.  ++++.++|++|++||++|+||.+|+.||+||+++++.+.  
T Consensus         4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~--~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~--   79 (386)
T PRK14289          4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPG--DKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAA--   79 (386)
T ss_pred             cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--ChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCC--
Confidence            5799999999999999999999999999999999975  367899999999999999999999999999998764321  


Q ss_pred             CCCCCCCCCCCCCccccCCCCCCCCCCCCCCChHHHHHH---hhCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCC
Q 038604           82 TSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEE---LFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSST  158 (315)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~---~fg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~  158 (315)
                       +.       ++   |.     +..     .++.++|+.   +|++.  +  ++..    +..       .|...     
T Consensus        80 -~~-------~~---~~-----~~~-----~~~~~~f~~f~~~fg~~--~--gg~~----~~~-------~~~~~-----  118 (386)
T PRK14289         80 -GG-------GG---FS-----GEG-----MSMEDIFSMFGDIFGGH--G--GGFG----GFG-------GFGGG-----  118 (386)
T ss_pred             -CC-------CC---CC-----CCC-----cChhhhhHHhhhhhccc--c--cCcc----ccc-------ccccc-----
Confidence             00       00   10     001     123444443   35421  0  0000    000       00000     


Q ss_pred             CCCCCcccccCCceEEEEeeehhhHhcCceeEEEEeeeEEc----CCC--------------------------------
Q 038604          159 ASGGAAEFKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYD----SVG--------------------------------  202 (315)
Q Consensus       159 ~~~~~~~~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~----g~G--------------------------------  202 (315)
                        .......++.|+.+.|.|||+|+|+|++++|.+.+.+.|    |+|                                
T Consensus       119 --~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~  196 (386)
T PRK14289        119 --GSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQT  196 (386)
T ss_pred             --cccCCCCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEE
Confidence              001123468899999999999999999999998765422    111                                


Q ss_pred             ------------------------cEEeEEEEEEEEeCCCCCCCCEEEecCCCCCC-CCCCCCcEEEEEEecCCCCeeec
Q 038604          203 ------------------------KTRTVEEILTVEIKPGWKKGTKITFPEKGNQE-PGIIAADLIFIVDEKPHALYRRD  257 (315)
Q Consensus       203 ------------------------~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~-~g~~~GDL~v~i~v~~h~~f~R~  257 (315)
                                              .++.+.++++|.||+|+++|++|+|+|+|++. .+..+|||+|+|++++|+.|+|+
T Consensus       197 ~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~  276 (386)
T PRK14289        197 QSTCPTCNGEGKIIKKKCKKCGGEGIVYGEEVITVKIPAGVAEGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRD  276 (386)
T ss_pred             EEecCCCCccccccCcCCCCCCCCcEEeeeEEEEEEeCCCCCCCCEEEEeccccCCCCCCCCccEEEEEEEecCCccccc
Confidence                                    13556788999999999999999999999986 46678999999999999999999


Q ss_pred             CCCeEEEEeeCHHHHHcCCeEEEecCCCcEEEEecCCCcCCCcEEEEcCCCcCCC
Q 038604          258 GNDLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPIS  312 (315)
Q Consensus       258 g~dL~~~~~Isl~eal~G~~~~i~tldG~~~~i~i~~~~~~g~~~~i~g~G~P~~  312 (315)
                      ++||++++.|||.+||+|+++.|+|+||+ +.|+||+++++|+++||+|+|||..
T Consensus       277 g~DL~~~~~Isl~eAl~G~~~~i~~ldg~-i~v~ip~g~~~g~~~ri~g~G~p~~  330 (386)
T PRK14289        277 ENDLIYNLLLSVPTAALGGAVEVPTIDGK-AKVKIEAGTQPGKVLRLRNKGLPSV  330 (386)
T ss_pred             ccceeEEeccCHHHHhCCCeEEeecCCce-EEEEECCccCCCcEEEECCCCcCCC
Confidence            99999999999999999999999999997 8999999999999999999999964

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.2e-52  Score=379.53  Aligned_cols=244  Identities=43%  Similarity=0.737  Sum_probs=208.4

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCCCCCC
Q 038604            2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKSGTVP   81 (315)
Q Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~   81 (315)
                      +..||+||||+++||.+|||+|||+||++||||+||+     +.++|++|++||||||||++|++||+||+++++.+..+
T Consensus         3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~-----~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~   77 (337)
T KOG0712|consen    3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD-----AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGG   77 (337)
T ss_pred             ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCC
Confidence            5689999999999999999999999999999999976     78999999999999999999999999999998643110


Q ss_pred             CCCCCCCCCCCCCccccCCCCCCCCCCCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCC
Q 038604           82 TSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEELFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTASG  161 (315)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~  161 (315)
                          +                  +   +.  .    |++||+.      ++.+       +                   
T Consensus        78 ----~------------------g---~~--~----f~~~F~~------g~~~-------~-------------------   94 (337)
T KOG0712|consen   78 ----G------------------G---FG--G----FSQFFGF------GGNG-------G-------------------   94 (337)
T ss_pred             ----C------------------C---Cc--c----HHHhccC------CCcC-------c-------------------
Confidence                0                  0   00  1    7788872      1111       0                   


Q ss_pred             CCcccccCCceEEEEeeehhhHhcCceeEEEEeeeEEc----CCC-----------------------------------
Q 038604          162 GAAEFKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYD----SVG-----------------------------------  202 (315)
Q Consensus       162 ~~~~~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~----g~G-----------------------------------  202 (315)
                        +...+++|+.+.+.|||+|+|.|.++++.++++.+|    +.|                                   
T Consensus        95 --~~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~  172 (337)
T KOG0712|consen   95 --RGRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLV  172 (337)
T ss_pred             --cccccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEeccccccccceeE
Confidence              011238999999999999999999888887765432    111                                   


Q ss_pred             -----------------------cEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCCCCCCCcEEEEEEecCCCCeeecCC
Q 038604          203 -----------------------KTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPGIIAADLIFIVDEKPHALYRRDGN  259 (315)
Q Consensus       203 -----------------------~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~g~~~GDL~v~i~v~~h~~f~R~g~  259 (315)
                                             +++.+.+.++|.|++|+.++++|.+.|++++.++..+||++|.|..++|+.|.|+|+
T Consensus       173 C~~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~ki~f~geadea~g~~pgD~vl~i~~k~h~~F~Rrg~  252 (337)
T KOG0712|consen  173 CDSCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQKITFKGEADEAPGTKPGDVVLLIDQKEHPGFDRRGS  252 (337)
T ss_pred             eccCCCccccccccccCcccccchhhhhhheeeccccCCCcccceeeeeeeeeecCCCcCccEEEEecccccccceeccc
Confidence                                   046677889999999999999999999999999888999999999999999999999


Q ss_pred             CeEEEEeeCHHHHHcCCeEEEecCCCcEEEEecC--CCcCCCcEEEEcCCCcCCCCCC
Q 038604          260 DLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLT--DIVKPGTEIVVPNEGMPISKEP  315 (315)
Q Consensus       260 dL~~~~~Isl~eal~G~~~~i~tldG~~~~i~i~--~~~~~g~~~~i~g~G~P~~~~p  315 (315)
                      ||++..+|+|.|||+|+.+.+.||||+.+.|.++  ++++|+++++|+|+|||+.++|
T Consensus       253 dL~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~~~~~~~v~~~gmp~~~~~  310 (337)
T KOG0712|consen  253 DLYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVISPGDTKRVEGEGMPIFRNP  310 (337)
T ss_pred             ccceeeecchhhccccceEEEEccCCceEEEecCCCceeChhHEEeecCCCcccccCC
Confidence            9999999999999999999999999999988875  4899999999999999998875

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=100.00  E-value=4.7e-40  Score=322.79  Aligned_cols=140  Identities=13%  Similarity=0.164  Sum_probs=130.5

Q ss_pred             ceEEEEeeehhhHhcCceeEEEEeeeEEcCCC-cEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCCCCCCCcEEEEEEec
Q 038604          171 AVENLLPCSLEEIYKGAKKKMRISRNVYDSVG-KTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPGIIAADLIFIVDEK  249 (315)
Q Consensus       171 di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G-~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~g~~~GDL~v~i~v~  249 (315)
                      +|.+.+.|+|+++|+||+++|++.|.+||+.| +++.+.++++|.||+|+++|++|+|+|+|+..+++. |||+|+|+++
T Consensus       658 dI~y~l~vtLEeLY~G~tKkIKitR~V~~g~G~ktvkE~ktLeVkIPpGVkdGqkIRf~GeGDegpgg~-GDLyVvIkVK  736 (871)
T TIGR03835       658 NLVYEEEVPQILFFNNQIKEIKYTRHTVDGNTESTTNEAITLEIQLPITSQLNISAIFKGFGHDFGNGC-GDLKVVFKVI  736 (871)
T ss_pred             ceEEecccCHHHHhCCCeEEEEEEEeeccCCCcceeeeeEEEEEecCCCCCCCCEEEeccccCCCCCCC-CCEEEEEEEc
Confidence            56678999999999999999999999998776 356677899999999999999999999999876654 9999999999


Q ss_pred             CCCCeeecCCCeEEEEeeCHHHHHcCCeEEEecCCCcEEEEecCCCcCCCcEEEEcCCCcCCC
Q 038604          250 PHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPIS  312 (315)
Q Consensus       250 ~h~~f~R~g~dL~~~~~Isl~eal~G~~~~i~tldG~~~~i~i~~~~~~g~~~~i~g~G~P~~  312 (315)
                      +|+.|+|+|+||+++++|+|.+||||+++.|+||||+ +.|+|++++++|+++||+|+|||..
T Consensus       737 PHp~FrRdGdDL~~~v~ISL~EALLGgtIeIpTLDGr-VkLkIPpgTqpGqvLRIkGKGMP~~  798 (871)
T TIGR03835       737 PSNFFQIKNDGLHVAALVDPLVAYNGGIIDVFGPNKL-FNVRIPGGIKVNDQVIFKDLGLTKT  798 (871)
T ss_pred             CCCCeEEECCeEEEEEecCHHHHhcCCEEEeeCCCCC-EEEeeCCCCCCCcEEEECCCCCCCC
Confidence            9999999999999999999999999999999999997 8999999999999999999999953

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5e-40  Score=297.17  Aligned_cols=255  Identities=35%  Similarity=0.560  Sum_probs=201.8

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCCCCCC
Q 038604            2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKSGTVP   81 (315)
Q Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~   81 (315)
                      ++|||+||||+++||..|||+||||||++||||+||+  ++.|.++|++|+.||||||||++|+.||+||++++....-.
T Consensus        15 ~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpd--dp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~~~   92 (336)
T KOG0713|consen   15 GRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPD--DPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDENKD   92 (336)
T ss_pred             CCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--CHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhcccccc
Confidence            5899999999999999999999999999999999997  58999999999999999999999999999999998743100


Q ss_pred             CCCCCCCCCCCCCccccCCCCCCCCCCCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCC
Q 038604           82 TSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEELFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTASG  161 (315)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~  161 (315)
                       +  .     ++          +.        -.++|+.||+.   |  +. .               ++...       
T Consensus        93 -~--~-----~g----------~~--------~~~~f~~~f~d---f--g~-~---------------~~g~~-------  118 (336)
T KOG0713|consen   93 -G--E-----GG----------GG--------GNDIFSAFFGD---F--GV-T---------------VGGNP-------  118 (336)
T ss_pred             -c--c-----cC----------Cc--------ccchHHHhhcc---c--cc-c---------------cCCCc-------
Confidence             0  0     00          00        04778888773   1  00 0               00000       


Q ss_pred             CCcccccCCceEEEEeeehhhHhcCceeE------EEEee----eEEc---------CCC----------------cEEe
Q 038604          162 GAAEFKKAPAVENLLPCSLEEIYKGAKKK------MRISR----NVYD---------SVG----------------KTRT  206 (315)
Q Consensus       162 ~~~~~~~~~di~~~l~vsl~e~~~G~~k~------i~~~r----~~~~---------g~G----------------~~~~  206 (315)
                      ......++.++...++.+++++|.+...+      +...+    ..+|         +.|                +...
T Consensus       119 ~~e~~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~~~g~~~~~~~~~~~~~~~~~g~~~~~q~~~~~~~~~~k~~~  198 (336)
T KOG0713|consen  119 LEEALPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKPAPGTRKCNCRLEMFTQQEGPGRFQMLQEAVCDECPNVKLVL  198 (336)
T ss_pred             ccCCCCCCceEEeehhhchhhhhcccHHHHHhccCceeecCcccccCChhhheeeccCCChhhhhhhhhhccCCccceee
Confidence            01113456677788888888887775321      11111    1100         011                2467


Q ss_pred             EEEEEEEEeCCCCCCCCEEEecCCCCCCCCCCCCcEEEEEEecCCCCeeecCCCeEEEEeeCHHHHHcCCeEEEecCCCc
Q 038604          207 VEEILTVEIKPGWKKGTKITFPEKGNQEPGIIAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGR  286 (315)
Q Consensus       207 ~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~g~~~GDL~v~i~v~~h~~f~R~g~dL~~~~~Isl~eal~G~~~~i~tldG~  286 (315)
                      ++..+++.+..|+..+....+..+|.+..-+.+||+.+.+..-+|+.|.|+++||++++.|++.+++.|+...+.++|+.
T Consensus       199 e~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~gD~~f~~~~y~~~~~~~k~~~~~~n~~~sl~~~~v~~~~e~~~~d~~  278 (336)
T KOG0713|consen  199 EEDPLEVEFERGDADGPEEIFELEGEPHIDGVPGDLFFKIVSYTHPRFERKGDDLYTNVTISLEAALVGFEMEILHLDGH  278 (336)
T ss_pred             cCCceeeeeeecccCCceeeeeccCCcceecccCCceeeeEEecccceecCccchhhHHHHHHHHHHHHHHHHhhccchh
Confidence            78899999999999999999999999988889999999999999999999999999999999999999999999999998


Q ss_pred             EEEEecCCCcCCCcEEEEcCCCcCCC
Q 038604          287 NLMIPLTDIVKPGTEIVVPNEGMPIS  312 (315)
Q Consensus       287 ~~~i~i~~~~~~g~~~~i~g~G~P~~  312 (315)
                      .+.+....+..|+..++.+++|||..
T Consensus       279 ~~~~~r~~~~~p~~~~~~~~~~~~~l  304 (336)
T KOG0713|consen  279 YVEVSRKKITWPGARTRKKGEGMPLL  304 (336)
T ss_pred             hhhhhhhhccccchhhhhhhccchhh
Confidence            88888888899999999999999953

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=3.1e-29  Score=229.35  Aligned_cols=221  Identities=29%  Similarity=0.459  Sum_probs=146.5

Q ss_pred             CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCCCCCCCC
Q 038604            4 DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKSGTVPTS   83 (315)
Q Consensus         4 ~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~   83 (315)
                      |||+||||+++|+..|||+||++||++||||.|.+   .++.++|++|.+|||+|+|+++|+.||.+|..+..      +
T Consensus        44 d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~---~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~~~------~  114 (288)
T KOG0715|consen   44 DYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKD---KEASKKFKEISEAYEILSDEEKRQEYDVYGLEQHG------E  114 (288)
T ss_pred             chhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC---cchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhccc------c
Confidence            89999999999999999999999999999999987   58999999999999999999999999999886510      0


Q ss_pred             CCCCCCCCCCCccccCCCCCCCCCCCCCCChHHHHHHhhCC-CCCCCCCCCCCCCCCCC-CCccccccccC---------
Q 038604           84 STSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEELFGS-ESNNNSGGQRGNNHNIR-GYSHREGLFRN---------  152 (315)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~fg~-~~~~~~~~~~~~~~~~~-~~~~~~~~f~~---------  152 (315)
                                +          .      .++.++|..+|+. .+... .+...   ... ...+.++.++.         
T Consensus       115 ----------~----------~------g~~~~~~~~~~~~~~~~~~-~~~~~---~~d~~~~f~~A~~g~~~~~~~~~~  164 (288)
T KOG0715|consen  115 ----------F----------G------GNPFDVFLEFFGGKMNKRV-PDKDQ---YYDLSLDFKEAVRGSKKRISFNVL  164 (288)
T ss_pred             ----------c----------c------CCccchHHHhhcccccccc-cCccc---ccccccCHHHHhhccccceEEEee
Confidence                      0          0      1456677777765 11110 00000   000 00000001110         


Q ss_pred             CCCCCCCCCCCccccc--------CCceEE---EEeeeh--hhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCC
Q 038604          153 GNCSSTASGGAAEFKK--------APAVEN---LLPCSL--EEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGW  219 (315)
Q Consensus       153 ~~~~~~~~~~~~~~~~--------~~di~~---~l~vsl--~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~  219 (315)
                      ..|..|.+.+...-.+        +.....   .-+..+  +..|.|....+.-.|..|.+.| .+...+.+.|.||+|+
T Consensus       165 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~~~~c~~~~g~~-~v~~~k~i~i~~~~g~  243 (288)
T KOG0715|consen  165 SDCETCFGSGAEEGAKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLVLRDNCQACSGAG-QVRRAKDIMIVLPAGV  243 (288)
T ss_pred             cccccccCcCcccccccccchhhhCcccccccccCCcceeecccccccceeccchHHHhhcch-hhhhheeEEeecCccc
Confidence            1233343333211000        000000   000001  1123333333333344556677 6778899999999999


Q ss_pred             CCCCEEEecCCCCCCCCCCCCcEEEEEEecCCCCeeecCCCeEEEEeeCHHH
Q 038604          220 KKGTKITFPEKGNQEPGIIAADLIFIVDEKPHALYRRDGNDLVVGQEITLLE  271 (315)
Q Consensus       220 ~~G~~i~~~g~G~~~~g~~~GDL~v~i~v~~h~~f~R~g~dL~~~~~Isl~e  271 (315)
                      .++.+|++.+.|..       ||+|.+.|.+++.|+|+|.|+++++.|++.|
T Consensus       244 ~~~~~l~~~~~~~~-------~l~v~~~v~~~~~~~r~~~~i~~~~~i~~~~  288 (288)
T KOG0715|consen  244 RSADTLRFAGHGND-------DLFVRLIVAKSPSFRREGKDILYDAIISFTQ  288 (288)
T ss_pred             ccccEEEEecCCcc-------eEEEEEEeccCcccccccCcccccccccccC
Confidence            99999999999874       9999999999999999999999999998764

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=4.1e-28  Score=222.80  Aligned_cols=291  Identities=48%  Similarity=0.818  Sum_probs=216.3

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCCCCC
Q 038604            1 MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKSGTV   80 (315)
Q Consensus         1 m~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~   80 (315)
                      |..|||++|+|.++|+.++|++||+++|++||||+++.. ...+..+|++|.+||++|+|+.+|..||+||++++.+.. 
T Consensus         1 ~~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~-~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~~~-   78 (306)
T KOG0714|consen    1 MGKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSP-KEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKGGG-   78 (306)
T ss_pred             CcccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCc-hhhHHHHHhhhhccccccCCHHHhhhccccCccccccCC-
Confidence            789999999999999999999999999999999999885 456777999999999999999999999999996665411 


Q ss_pred             CCCCCCCCCCCCCCccccCCCCCCCCCCCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCCCccccccccCCC--CCCC
Q 038604           81 PTSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEELFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGN--CSST  158 (315)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~--~~~~  158 (315)
                        ....         .+.     .+.+.+...++.++|.+|||...++.......   ...+.......|....  ....
T Consensus        79 --~~~~---------~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  139 (306)
T KOG0714|consen   79 --SFSS---------SFT-----SELFYFLFRKPDKDFYEFFGVSSPFSGSKKGY---RDKNAAPGEEAFKSEGKAFQSL  139 (306)
T ss_pred             --CCCC---------CCC-----CCcceeccCchhhhHHHHhCCCCCCccccccC---CccccccCcccccccccccccc
Confidence              0000         000     00111223467899999999766652110000   0000000000010000  0000


Q ss_pred             CC---------CCCcccccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcE-EeEEEEEEEEeCCCCCCCCEEEec
Q 038604          159 AS---------GGAAEFKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKT-RTVEEILTVEIKPGWKKGTKITFP  228 (315)
Q Consensus       159 ~~---------~~~~~~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~-~~~~~~~~V~Ip~G~~~G~~i~~~  228 (315)
                      .+         ......+....+...+.+++++++.++.+...+.+......+.. ......+.+.+.+++..|+.+...
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (306)
T KOG0714|consen  140 YGPKRKQYDSSGSDRSARQSPPVEHPLRVSLEDLYKGESKKMKISRQSFTSNGREGSSRSRYLSISIKPGWKEGTKITFP  219 (306)
T ss_pred             CCCcccccccccccccccCCCCccCCcceeHHHhccccceeeecccccccCCcccccCccceeEEeccCCcccccceecc
Confidence            00         00011223334666677799999999999999998877655543 456778899999999999999999


Q ss_pred             CCCCCCCCCCCCcEEEEEEecCCCCeeecCCCeEEE--EeeCHHHHHcCCeEEEecCCCcEEEEecC-CCcCCCcEEEEc
Q 038604          229 EKGNQEPGIIAADLIFIVDEKPHALYRRDGNDLVVG--QEITLLEALTGKTLDLTTLDGRNLMIPLT-DIVKPGTEIVVP  305 (315)
Q Consensus       229 g~G~~~~g~~~GDL~v~i~v~~h~~f~R~g~dL~~~--~~Isl~eal~G~~~~i~tldG~~~~i~i~-~~~~~g~~~~i~  305 (315)
                      .+|+..++..+-++++.+..++|+.|.+.+++|...  ..|++.+|++|+...++++++..+.+.+. ..+.++...+++
T Consensus       220 ~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (306)
T KOG0714|consen  220 EEGDEEPGILPADIEFVVDEKPHPLFSRDGNDLSYSSGYEISLKEALLGVTVFVPTLDGRSYSLSINKDLIEPGEEDVIP  299 (306)
T ss_pred             ccccccCCcCcceeEEEEecCCcccccCCCccceecccceeehhhhhcCcceeeecccCccccCcccccccCCCceeeec
Confidence            999987777789999999999999999999999999  99999999999999999999998888887 889999999999


Q ss_pred             CCCcCCC
Q 038604          306 NEGMPIS  312 (315)
Q Consensus       306 g~G~P~~  312 (315)
                      ++|||..
T Consensus       300 ~~~~~~~  306 (306)
T KOG0714|consen  300 GEGLPCP  306 (306)
T ss_pred             CCCCCCC
Confidence            9999963

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=1e-20  Score=166.71  Aligned_cols=74  Identities=51%  Similarity=0.915  Sum_probs=69.5

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCC
Q 038604            2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKS   77 (315)
Q Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~   77 (315)
                      ..|+|+||||+++|+.++||||||+||++||||++++  ++++..+|++||+||+||+|+.+|..||.||+.++.-
T Consensus        30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd--~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~l  103 (279)
T KOG0716|consen   30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGD--NPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLKL  103 (279)
T ss_pred             hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCC--CchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHHH
Confidence            4689999999999999999999999999999999987  3889999999999999999999999999999987753

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=4.8e-20  Score=172.39  Aligned_cols=77  Identities=45%  Similarity=0.780  Sum_probs=72.0

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCCC
Q 038604            1 MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKSG   78 (315)
Q Consensus         1 m~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~   78 (315)
                      |++.||+||||.++|+..+||++||+|||+||||+||. .-++++++|+.|+.||+|||||+.|++||.+-++.|.+.
T Consensus         6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd-~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~~~   82 (508)
T KOG0717|consen    6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPD-RIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILRGK   82 (508)
T ss_pred             hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCc-cHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhcCC
Confidence            56889999999999999999999999999999999987 568999999999999999999999999999999887654

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=2.8e-18  Score=150.75  Aligned_cols=221  Identities=26%  Similarity=0.376  Sum_probs=141.5

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhcccc-ccccCCCC
Q 038604            1 MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYG-EEGLKSGT   79 (315)
Q Consensus         1 m~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G-~~~~~~~~   79 (315)
                      |..+||+||||+++|+..||++|||++|++||||+++.... .+.++|+.|++||++|+|+.+|..||+++ ........
T Consensus         4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~-~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~~~~~~~~~~   82 (237)
T COG2214           4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPK-VAEEKFKEINEAYEILSDPERRAEYDKIGADNYFPGKS   82 (237)
T ss_pred             hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchh-HHHHHHHHHHHHHHHhhCHHHHHHhhhhcccccCcccc
Confidence            45799999999999999999999999999999999986322 48999999999999999999999999985 22211100


Q ss_pred             CCCCCCCCCCCCCCCccccCCCCCCCCCCCCC-CChHHHHHHhhCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCC
Q 038604           80 VPTSSTSTSASRAGQHYYHQRQHPNPSFRFNP-RDAEDIYEELFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSST  158 (315)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~  158 (315)
                            ..    . ...++          ... ..+.+++...++...... ....  ......... ...+........
T Consensus        83 ------~~----~-~~~~~----------~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~-~~~~~~~~~~~~  137 (237)
T COG2214          83 ------YR----E-SAAFP----------IEGSLQLTGLYEEWRGKRNKTE-RKAS--LADLLSRGL-SGLAAALSLFAD  137 (237)
T ss_pred             ------cc----c-ccccc----------ccccccHHHHHHhhcccccccc-cccc--hhhhccccc-cccccccccccc
Confidence                  00    0 00000          000 134555555554321100 0000  000000000 000000000000


Q ss_pred             CCCCCcccccCC-ceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCCCC
Q 038604          159 ASGGAAEFKKAP-AVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPGI  237 (315)
Q Consensus       159 ~~~~~~~~~~~~-di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~g~  237 (315)
                      .. ......... ++...+.+++.+.+.+....+...      ..      ....+.+|.++..+..+++.+++.... .
T Consensus       138 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  203 (237)
T COG2214         138 EA-ALRSGSLRRRDLAANLADNFEEALAGVKKAVARL------LG------KALKSTIKAGALEGKALRLKGLLKSAR-G  203 (237)
T ss_pred             cc-ccccccccccceeeeeeccHHHHhcCcceeeecc------cc------ccccccCCcccccCceeeecccCCcCC-C
Confidence            00 000000111 577788899999998887777664      12      233489999999999999999998877 7


Q ss_pred             CCCcEEEEEEecCCCCeeecCCCe
Q 038604          238 IAADLIFIVDEKPHALYRRDGNDL  261 (315)
Q Consensus       238 ~~GDL~v~i~v~~h~~f~R~g~dL  261 (315)
                      ..++.+..+..++|+.|..++.++
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~  227 (237)
T COG2214         204 ALGKARLKELSKRHPPFALEGDDK  227 (237)
T ss_pred             CcccceeeeeccCCCCccccCCcc
Confidence            789999999999999999999999

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=8.4e-20  Score=170.82  Aligned_cols=74  Identities=50%  Similarity=0.973  Sum_probs=69.5

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccC
Q 038604            3 FDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNP-SHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLK   76 (315)
Q Consensus         3 ~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~-~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~   76 (315)
                      .|||.+|+|+++||.+|||+|||++++.|||||.- .+.++.|+++|+.|.+||||||||++|++||.||++|++
T Consensus         9 ~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~   83 (546)
T KOG0718|consen    9 IELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK   83 (546)
T ss_pred             hhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence            48999999999999999999999999999999986 334678999999999999999999999999999999998

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.77  E-value=4.5e-19  Score=179.12  Aligned_cols=73  Identities=36%  Similarity=0.640  Sum_probs=68.0

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCC
Q 038604            2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKS   77 (315)
Q Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~   77 (315)
                      +.+||+||||+++||..+||+|||+||++||||+++.   ..|.++|++|++||+|||||.+|+.||+||..++..
T Consensus       572 d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~---~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~~  644 (1136)
T PTZ00341        572 DTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSG---NEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIKG  644 (1136)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---chHHHHHHHHHHHHHHhCCHHHHHHHhhccccccCC
Confidence            5799999999999999999999999999999999986   357889999999999999999999999999987653

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=3.8e-19  Score=153.21  Aligned_cols=72  Identities=43%  Similarity=0.763  Sum_probs=68.2

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhcccccc
Q 038604            2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEE   73 (315)
Q Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~   73 (315)
                      .+|+|+||||.++|+..+|++||++||+.||||+++.+.+.+++.+|+.++.||.||+|.++|+.||+.|.-
T Consensus        13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~i   84 (264)
T KOG0719|consen   13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSI   84 (264)
T ss_pred             ccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCC
Confidence            469999999999999999999999999999999998767889999999999999999999999999998764

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=8.2e-19  Score=159.66  Aligned_cols=72  Identities=43%  Similarity=0.822  Sum_probs=68.0

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhcccccccc
Q 038604            2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGL   75 (315)
Q Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~   75 (315)
                      +.|||+||||+.+|+..||++|||+.|++||||+||+  ++.|.++|+.+.+||+||+|+.+|..||.+|..+.
T Consensus         4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~--dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~   75 (296)
T KOG0691|consen    4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPG--DPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGS   75 (296)
T ss_pred             cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCC--ChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcc
Confidence            5799999999999999999999999999999999998  46699999999999999999999999999988754

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.74  E-value=2.9e-18  Score=156.01  Aligned_cols=76  Identities=46%  Similarity=0.808  Sum_probs=68.6

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc-hhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCCCC
Q 038604            3 FDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHK-RTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKSGT   79 (315)
Q Consensus         3 ~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~   79 (315)
                      +|||+||||.++|+..||.||||+||.+||||-..++. +..|+++|..|..|-|||+||++|+.||. |++-+....
T Consensus       394 RDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn-GeDPLD~Es  470 (504)
T KOG0624|consen  394 RDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN-GEDPLDPES  470 (504)
T ss_pred             chHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC-CCCCCChhh
Confidence            79999999999999999999999999999999987644 66799999999999999999999999997 777666543

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.74  E-value=1.6e-18  Score=123.86  Aligned_cols=64  Identities=48%  Similarity=0.905  Sum_probs=59.6

Q ss_pred             CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhc
Q 038604            4 DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYD   68 (315)
Q Consensus         4 ~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD   68 (315)
                      |||+||||+++++.++||++|+++++++|||+++... ..+.+.|..|++||++|++|.+|+.||
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~-~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDE-AEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTH-HHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhh-hhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            6899999999999999999999999999999987622 468899999999999999999999998

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>PHA03102 Small T antigen; Reviewed

Probab=99.69  E-value=4.2e-17  Score=135.02  Aligned_cols=66  Identities=27%  Similarity=0.374  Sum_probs=60.9

Q ss_pred             CcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhcccccccc
Q 038604            4 DYYNILKVNRNA--NEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGL   75 (315)
Q Consensus         4 ~~y~iLgv~~~a--s~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~   75 (315)
                      .+|+||||+++|  |.++||+|||++|+++|||++++      .++|++|++||++|+|+.+|..||.+|.+..
T Consensus         6 ~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~------~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~   73 (153)
T PHA03102          6 ELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD------EEKMKELNTLYKKFRESVKSLRDLDGEEDSS   73 (153)
T ss_pred             HHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch------hHHHHHHHHHHHHHhhHHHhccccccCCccc
Confidence            579999999999  99999999999999999999865      4699999999999999999999999987643

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.66  E-value=1.6e-16  Score=111.78  Aligned_cols=59  Identities=61%  Similarity=1.045  Sum_probs=54.5

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChh
Q 038604            3 FDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQ   62 (315)
Q Consensus         3 ~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~   62 (315)
                      +|||+||||+++++.++||+||++|++.+|||+++.. .+.+.+.|.+|++||++|+||.
T Consensus         1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~-~~~~~~~~~~l~~Ay~~L~~~~   59 (60)
T smart00271        1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGD-KEEAEEKFKEINEAYEVLSDPE   59 (60)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-hHHHHHHHHHHHHHHHHHcCCC
Confidence            4899999999999999999999999999999999742 4778999999999999999985

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=2.1e-16  Score=135.19  Aligned_cols=71  Identities=39%  Similarity=0.764  Sum_probs=65.0

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccc
Q 038604            2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEG   74 (315)
Q Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~   74 (315)
                      ..|+||||||+++||.+|||+|||+|+++||||+++..  .+.++.|..|++||+.|+|+..|..|..||+..
T Consensus        98 ~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~--~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PD  168 (230)
T KOG0721|consen   98 KFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPE--EGDEEFFEAIAKAYQALTDKKSRENWEKYGNPD  168 (230)
T ss_pred             cCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCc--chhHHHHHHHHHHHHHhcchhhHHHHHHhCCCC
Confidence            46999999999999999999999999999999999762  456778899999999999999999999999864

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.64  E-value=5.1e-16  Score=107.24  Aligned_cols=55  Identities=60%  Similarity=1.059  Sum_probs=51.5

Q ss_pred             CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCC
Q 038604            4 DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSD   60 (315)
Q Consensus         4 ~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d   60 (315)
                      |||+||||+++++.++||++|++|+++||||+++..  +.+.+.|.+|++||++|+|
T Consensus         1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~--~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD--PEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--HHHHHHHHHHHHHHHHhcC
Confidence            799999999999999999999999999999999752  6788999999999999986

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.51  E-value=2.4e-14  Score=121.17  Aligned_cols=69  Identities=25%  Similarity=0.428  Sum_probs=59.2

Q ss_pred             CCCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc-hhHHHHHHHHHHHHHHhcCChhhhhhhccc
Q 038604            2 GFDYYNILKVNRN--ANEDDLKKAYKRLAMIWHPDKNPSHK-RTEAEAKFKQISEAYDVLSDPQKRQIYDLY   70 (315)
Q Consensus         2 ~~~~y~iLgv~~~--as~~eIk~ayr~la~~~hPd~~~~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~   70 (315)
                      +.|||++|||++.  ++..+|+++||+|++++|||++.+.. +..+.+.+..||+||++|+||.+|+.|+..
T Consensus         1 ~~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~   72 (166)
T PRK01356          1 MQNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLL   72 (166)
T ss_pred             CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            4699999999996  78999999999999999999986421 233456789999999999999999999763

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.50  E-value=3.6e-14  Score=120.74  Aligned_cols=67  Identities=30%  Similarity=0.495  Sum_probs=58.6

Q ss_pred             CCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc---hhHHHHHHHHHHHHHHhcCChhhhhhhcc
Q 038604            3 FDYYNILKVNRN--ANEDDLKKAYKRLAMIWHPDKNPSHK---RTEAEAKFKQISEAYDVLSDPQKRQIYDL   69 (315)
Q Consensus         3 ~~~y~iLgv~~~--as~~eIk~ayr~la~~~hPd~~~~~~---~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~   69 (315)
                      +|||++|||++.  ++..+|+++||+|++++|||+.....   +..+.+.|..||+||++|+||.+|+.|+.
T Consensus         1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll   72 (171)
T PRK05014          1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL   72 (171)
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence            489999999996  68899999999999999999976422   22367789999999999999999999985

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=1.5e-14  Score=126.36  Aligned_cols=65  Identities=38%  Similarity=0.683  Sum_probs=61.4

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccc
Q 038604            3 FDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLY   70 (315)
Q Consensus         3 ~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~   70 (315)
                      .|+|+||||+++|+.+||.+|||+||++||||++++   ++..+.|+.|..|||+|.|...|..||-+
T Consensus        33 enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~---~e~k~~F~~iAtayeilkd~e~rt~ydya   97 (329)
T KOG0722|consen   33 ENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRD---PESKKLFVKIATAYEILKDNETRTQYDYA   97 (329)
T ss_pred             hhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCC---chhhhhhhhhhcccccccchhhHHhHHHH
Confidence            589999999999999999999999999999999987   67779999999999999999999999963

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=5.3e-14  Score=130.99  Aligned_cols=66  Identities=55%  Similarity=0.947  Sum_probs=63.0

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhcc
Q 038604            3 FDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDL   69 (315)
Q Consensus         3 ~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~   69 (315)
                      .|||.||||.++|+..|||+|||++|+.||||++.. ++.+++.+|+++-+||.+|+|+.+|..||.
T Consensus       373 kd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~ag-sq~eaE~kFkevgeAy~il~d~~kr~r~ds  438 (486)
T KOG0550|consen  373 KDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAG-SQKEAEAKFKEVGEAYTILSDPMKRVRFDS  438 (486)
T ss_pred             hhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcc-hhHHHHHHHHHHHHHHHHhcCHHHHhhccc
Confidence            589999999999999999999999999999999987 468899999999999999999999999996

>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress

Probab=99.46  E-value=5.3e-14  Score=105.24  Aligned_cols=55  Identities=36%  Similarity=0.603  Sum_probs=47.6

Q ss_pred             CeEEEEeeCHHHHHcCCeEEEecCCCcEEEEecCCCcCCCcEEEEcCCCcCCCCC
Q 038604          260 DLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPISKE  314 (315)
Q Consensus       260 dL~~~~~Isl~eal~G~~~~i~tldG~~~~i~i~~~~~~g~~~~i~g~G~P~~~~  314 (315)
                      ||+++++|||+||++|++++|+|+||+.+.|++|+++++|++++|+|+|||....
T Consensus         1 DL~~~~~I~l~~al~G~~i~i~~l~g~~~~i~ip~~~~~g~~~~i~g~G~p~~~~   55 (81)
T PF01556_consen    1 DLYCTIPISLKEALLGGTISIPTLDGKTIKIKIPPGTQPGQQLRIKGKGMPKPKG   55 (81)
T ss_dssp             EEEEEEEEEHHHHHH-EEEEEE-TTS-EEEEEETST-STT-EEEETTESEEESSS
T ss_pred             CeEEEEEeCHHHHhCCCEEEEECCCCCEEEEeccCccCCCcEEeecCCCCCcCCC
Confidence            7999999999999999999999999988999999999999999999999997653

The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.43  E-value=2.5e-13  Score=115.92  Aligned_cols=68  Identities=28%  Similarity=0.397  Sum_probs=58.0

Q ss_pred             CCCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc---hhHHHHHHHHHHHHHHhcCChhhhhhhcc
Q 038604            2 GFDYYNILKVNRN--ANEDDLKKAYKRLAMIWHPDKNPSHK---RTEAEAKFKQISEAYDVLSDPQKRQIYDL   69 (315)
Q Consensus         2 ~~~~y~iLgv~~~--as~~eIk~ayr~la~~~hPd~~~~~~---~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~   69 (315)
                      ..|||+||||++.  ++..+|+++||+|++++|||++....   +..+.+.+..||+||++|+||.+|+.|+.
T Consensus         5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll   77 (176)
T PRK03578          5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL   77 (176)
T ss_pred             CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence            4799999999995  68999999999999999999986422   12245567899999999999999999985

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.43  E-value=2.9e-13  Score=115.07  Aligned_cols=68  Identities=25%  Similarity=0.382  Sum_probs=59.9

Q ss_pred             CCCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc---hhHHHHHHHHHHHHHHhcCChhhhhhhcc
Q 038604            2 GFDYYNILKVNRN--ANEDDLKKAYKRLAMIWHPDKNPSHK---RTEAEAKFKQISEAYDVLSDPQKRQIYDL   69 (315)
Q Consensus         2 ~~~~y~iLgv~~~--as~~eIk~ayr~la~~~hPd~~~~~~---~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~   69 (315)
                      ..|||++|||++.  .+..+|+++||+|++++|||++....   +..+.+.|..||+||++|+||.+|+.|+.
T Consensus         3 ~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL   75 (173)
T PRK00294          3 TPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL   75 (173)
T ss_pred             CCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence            5799999999997  56899999999999999999986422   23467889999999999999999999986

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.39  E-value=2.7e-13  Score=127.54  Aligned_cols=65  Identities=42%  Similarity=0.696  Sum_probs=62.3

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccc
Q 038604            3 FDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLY   70 (315)
Q Consensus         3 ~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~   70 (315)
                      .|.|.+|||++++|.++|||.||++|...|||||-.   +.|++.|+.++.|||+|+|+.+|..||.-
T Consensus       235 ~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~---~~A~Eafk~Lq~Afevig~~~kR~eYd~e  299 (490)
T KOG0720|consen  235 LDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMI---PRAEEAFKKLQVAFEVIGDSVKRKEYDLE  299 (490)
T ss_pred             CCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCC---hhHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence            689999999999999999999999999999999975   88999999999999999999999999973

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.38  E-value=4.4e-13  Score=105.55  Aligned_cols=51  Identities=29%  Similarity=0.449  Sum_probs=46.4

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcC
Q 038604            3 FDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLS   59 (315)
Q Consensus         3 ~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~   59 (315)
                      .++|+||||+++||.+|||++||+|++++|||++.+      .+.|++|++||++|.
T Consensus        65 ~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs------~~~~~kIneAyevL~  115 (116)
T PTZ00100         65 SEAYKILNISPTASKERIREAHKQLMLRNHPDNGGS------TYIASKVNEAKDLLL  115 (116)
T ss_pred             HHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC------HHHHHHHHHHHHHHh
Confidence            478999999999999999999999999999999654      467899999999985

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=99.31  E-value=1.2e-12  Score=122.56  Aligned_cols=74  Identities=43%  Similarity=0.795  Sum_probs=68.3

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---cchhHHHHHHHHHHHHHHhcCChhhhhhhcccccccc
Q 038604            2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPS---HKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGL   75 (315)
Q Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~---~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~   75 (315)
                      ..|+||||||+.+++..+||++||+|+.|+||||-+.   +.+.+.++.+++|++||+.|+|+..|..|-.||....
T Consensus        97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~  173 (610)
T COG5407          97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDS  173 (610)
T ss_pred             CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCC
Confidence            3699999999999999999999999999999999875   5578899999999999999999999999999997543

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.31  E-value=1.4e-12  Score=118.62  Aligned_cols=58  Identities=29%  Similarity=0.534  Sum_probs=51.4

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----cchhHHHHHHHHHHHHHHhcCC
Q 038604            3 FDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPS-----HKRTEAEAKFKQISEAYDVLSD   60 (315)
Q Consensus         3 ~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~-----~~~~~~~~~f~~i~~Ay~~L~d   60 (315)
                      .++|+||||++++|.+|||+|||+|+++||||++..     +..+.++++|++|++||++|+.
T Consensus       200 ~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~  262 (267)
T PRK09430        200 EDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK  262 (267)
T ss_pred             HhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            489999999999999999999999999999999642     1235689999999999999975

>PHA02624 large T antigen; Provisional

Probab=99.25  E-value=5.1e-12  Score=124.52  Aligned_cols=59  Identities=29%  Similarity=0.398  Sum_probs=55.2

Q ss_pred             CCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhh
Q 038604            3 FDYYNILKVNRNA--NEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIY   67 (315)
Q Consensus         3 ~~~y~iLgv~~~a--s~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~y   67 (315)
                      .++|++|||+++|  +.++||+|||++|++||||++.+      .++|++|++||++|+|+.+|..|
T Consensus        11 ~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd------eekfk~Ln~AYevL~d~~k~~r~   71 (647)
T PHA02624         11 KELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD------EEKMKRLNSLYKKLQEGVKSARQ   71 (647)
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc------HHHHHHHHHHHHHHhcHHHhhhc
Confidence            4789999999999  99999999999999999999754      57999999999999999999988

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.14  E-value=8.2e-11  Score=112.18  Aligned_cols=86  Identities=16%  Similarity=0.144  Sum_probs=76.0

Q ss_pred             ccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCC-CCCCCcEEEE
Q 038604          167 KKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEP-GIIAADLIFI  245 (315)
Q Consensus       167 ~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~-g~~~GDL~v~  245 (315)
                      +++.||++.++|||.||+.|+++.|...      +|      ++++|.||+|+.+|++|+|+|+|++.. +..+|||||+
T Consensus       273 r~G~DL~~~~~Isl~eAl~G~~~~i~~l------dG------~~i~v~Ip~g~~~g~~iri~GkG~p~~~~~~~GDL~V~  340 (369)
T PRK14282        273 RSGSDLIYDVTIDYLQAILGTTVEVPLP------EG------GTTMLKIPPGTQPETVFRLKGKGLPNMRYGRRGDLIVN  340 (369)
T ss_pred             EecCCEEEEEEeCHHHHhCCCEEEEeCC------CC------cEEEEEeCCCcCCCCEEEECCCCCCCCCCCCCCCEEEE
Confidence            5678999999999999999999988764      67      478999999999999999999999853 3467999999


Q ss_pred             EEecCCCCeeecCCCeEEE
Q 038604          246 VDEKPHALYRRDGNDLVVG  264 (315)
Q Consensus       246 i~v~~h~~f~R~g~dL~~~  264 (315)
                      |.|..|+.|++++.+|+.+
T Consensus       341 ~~v~~P~~l~~~~~~ll~~  359 (369)
T PRK14282        341 VHVEIPKRLSREERKLLKE  359 (369)
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            9999999999999887654

>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress

Probab=99.14  E-value=3.9e-11  Score=89.68  Aligned_cols=73  Identities=23%  Similarity=0.345  Sum_probs=57.9

Q ss_pred             ceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCC-CC-CCCcEEEEEEe
Q 038604          171 AVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEP-GI-IAADLIFIVDE  248 (315)
Q Consensus       171 di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~-g~-~~GDL~v~i~v  248 (315)
                      |++++++|+|.||+.|+++.|...      +|      ++++|.||+|+++|++++|+|+|.+.. +. ..|||+|+++|
T Consensus         1 DL~~~~~I~l~~al~G~~i~i~~l------~g------~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V   68 (81)
T PF01556_consen    1 DLYCTIPISLKEALLGGTISIPTL------DG------KTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEV   68 (81)
T ss_dssp             EEEEEEEEEHHHHHH-EEEEEE-T------TS-------EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEE
T ss_pred             CeEEEEEeCHHHHhCCCEEEEECC------CC------CEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEE
Confidence            688999999999999999988765      67      589999999999999999999999743 33 68999999999


Q ss_pred             cCCCCee
Q 038604          249 KPHALYR  255 (315)
Q Consensus       249 ~~h~~f~  255 (315)
                      .-+..++
T Consensus        69 ~~P~~ls   75 (81)
T PF01556_consen   69 EFPKKLS   75 (81)
T ss_dssp             E--SSTS
T ss_pred             ECCCCCC
Confidence            9776554

The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=99.12  E-value=1.3e-10  Score=98.90  Aligned_cols=68  Identities=19%  Similarity=0.260  Sum_probs=58.9

Q ss_pred             CCCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc---hhHHHHHHHHHHHHHHhcCChhhhhhhcc
Q 038604            2 GFDYYNILKVNRN--ANEDDLKKAYKRLAMIWHPDKNPSHK---RTEAEAKFKQISEAYDVLSDPQKRQIYDL   69 (315)
Q Consensus         2 ~~~~y~iLgv~~~--as~~eIk~ayr~la~~~hPd~~~~~~---~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~   69 (315)
                      ++|||++||+++.  .+...+++.|++|.+++|||+.....   +..+.+....||+||.+|+||.+|+.|=.
T Consensus         1 ~~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL   73 (173)
T PRK01773          1 MNNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII   73 (173)
T ss_pred             CCChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence            4799999999986  79999999999999999999975422   33466778999999999999999999943

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.03  E-value=4.7e-10  Score=106.87  Aligned_cols=86  Identities=9%  Similarity=0.092  Sum_probs=75.5

Q ss_pred             ccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCCC-CCCCcEEEE
Q 038604          167 KKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPG-IIAADLIFI  245 (315)
Q Consensus       167 ~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~g-~~~GDL~v~  245 (315)
                      +.+.||++.++|||.+|+.|+.+.|...      +|       +++|.||+|+++|++|+|+|+|++.++ ..+|||||+
T Consensus       267 R~G~DL~~~~~Isl~eAl~G~~~~I~~~------~g-------~i~V~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~  333 (365)
T PRK14290        267 RINDDLYVDQKINFPQAALGGEIEIKLF------RE-------KYNLKIPEGTQPGEVLKIKGAGMPHLNGHGSGDLLVR  333 (365)
T ss_pred             EecCCEEEEEEeCHHHHhCCCEEEEEcC------Cc-------eEEEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEE
Confidence            4578999999999999999999988764      34       689999999999999999999998644 358999999


Q ss_pred             EEecCCCCeeecCCCeEEEE
Q 038604          246 VDEKPHALYRRDGNDLVVGQ  265 (315)
Q Consensus       246 i~v~~h~~f~R~g~dL~~~~  265 (315)
                      |+|..|+.|++++.+|+.++
T Consensus       334 ~~V~~P~~l~~~~~~ll~~~  353 (365)
T PRK14290        334 INVEVPKRLTSKQKELIREF  353 (365)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            99999999999998887653

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=99.02  E-value=5.1e-10  Score=93.99  Aligned_cols=56  Identities=30%  Similarity=0.440  Sum_probs=48.0

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCcc---hhHHHHHHHHHHHHHHhcCChhhhhhhccc
Q 038604           15 ANEDDLKKAYKRLAMIWHPDKNPSHK---RTEAEAKFKQISEAYDVLSDPQKRQIYDLY   70 (315)
Q Consensus        15 as~~eIk~ayr~la~~~hPd~~~~~~---~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~   70 (315)
                      .+..+|+++||+|++++|||+..+..   +..+.+.|..||+||++|+||.+|+.|+..
T Consensus         3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~   61 (157)
T TIGR00714         3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLS   61 (157)
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence            46789999999999999999965421   334778999999999999999999999874

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.01  E-value=5.7e-10  Score=106.33  Aligned_cols=87  Identities=20%  Similarity=0.173  Sum_probs=75.2

Q ss_pred             cccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCCC-CCCCcEEE
Q 038604          166 FKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPG-IIAADLIF  244 (315)
Q Consensus       166 ~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~g-~~~GDL~v  244 (315)
                      .+.+.||++.++|||.||+.|.++.|...      +|       .++|.||+|+.+|++|+|+|+|++.++ ..+|||||
T Consensus       260 ~R~G~DL~~~~~Isl~eAl~G~~~~i~tl------dG-------~~~v~ip~g~~~g~~iri~G~G~p~~~~~~~GDL~V  326 (366)
T PRK14294        260 ERDGNDVHCKVPISFVQAALGAQIEVPTL------EG-------ERELKIPKGTQPGDIFRFKGKGIPSLRGGGRGDQII  326 (366)
T ss_pred             eecCCCEEEEEEeCHHHHhCCCeEEEECC------CC-------cEEEEECCCcCCCCEEEECCCCCCCCCCCCCCCEEE
Confidence            35688999999999999999999888865      56       459999999999999999999998644 35799999


Q ss_pred             EEEecCCCCeeecCCCeEEEE
Q 038604          245 IVDEKPHALYRRDGNDLVVGQ  265 (315)
Q Consensus       245 ~i~v~~h~~f~R~g~dL~~~~  265 (315)
                      +|+|..|+.|++++.+|+..+
T Consensus       327 ~~~v~~P~~l~~~q~~ll~~~  347 (366)
T PRK14294        327 EVEVKVPTRLTKKQEELLTEF  347 (366)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            999999999999887776543

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.00  E-value=5.9e-10  Score=106.12  Aligned_cols=85  Identities=16%  Similarity=0.228  Sum_probs=74.1

Q ss_pred             ccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCCCC-CCCcEEEE
Q 038604          167 KKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPGI-IAADLIFI  245 (315)
Q Consensus       167 ~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~g~-~~GDL~v~  245 (315)
                      +.+.||++.++|||.||+.|.++.|...      +|      ++++|.||+|+.+|++|+|+|+|++.++. ..|||+|+
T Consensus       263 R~G~dL~~~~~Isl~eAl~G~~~~i~tl------dG------~~v~V~Ip~g~~~g~~irl~GkG~p~~~~~~~GDL~V~  330 (365)
T PRK14285        263 RNGKDLYATLPISFTQAALGKEIKIQTI------AS------KKIKIKIPKGTENDEQIIIKNEGMPILHTEKFGNLILI  330 (365)
T ss_pred             EeccceEEEEecCHHHHhCCCEEEEECC------CC------CEEEEEeCCCcCCCcEEEECCCCccCCCCCCCCCEEEE
Confidence            4577999999999999999999988875      66      47899999999999999999999986544 46999999


Q ss_pred             EEecCCCCeeecCCCeEE
Q 038604          246 VDEKPHALYRRDGNDLVV  263 (315)
Q Consensus       246 i~v~~h~~f~R~g~dL~~  263 (315)
                      |+|..|+.|++++..|+.
T Consensus       331 ~~v~~P~~l~~~q~~~l~  348 (365)
T PRK14285        331 IKIKTPKNLNSNAIKLLE  348 (365)
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            999999999988866553

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.00  E-value=6e-10  Score=102.94  Aligned_cols=84  Identities=15%  Similarity=0.054  Sum_probs=73.6

Q ss_pred             cccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCCCCCCCcEEEE
Q 038604          166 FKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPGIIAADLIFI  245 (315)
Q Consensus       166 ~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~g~~~GDL~v~  245 (315)
                      .+++.||++.++|||.+|+.|+++.|...      +|       .++|.||+|+.+|++++|+|+|.+..++..|||+|+
T Consensus       197 ~R~G~DL~~~~~Isl~eAl~G~~~~v~tl------dG-------~~~v~ip~~~~~g~~~rl~g~G~p~~~~~~GDL~v~  263 (291)
T PRK14299        197 RLEGDDLYATVDVPAPIAVVGGKVRVMTL------DG-------PVEVTIPPRTQAGRKLRLKGKGWPRGPAGRGDQYAE  263 (291)
T ss_pred             EEECCEEEEEEecCHHHHhCCCEEEEECC------CC-------CEEEEeCCCcCCCCEEEECCCCCCCCCCCCCCEEEE
Confidence            45688999999999999999999888765      56       589999999999999999999998544568999999


Q ss_pred             EEecCCCCeeecCCCeE
Q 038604          246 VDEKPHALYRRDGNDLV  262 (315)
Q Consensus       246 i~v~~h~~f~R~g~dL~  262 (315)
                      |+|..|+.++.++.+|+
T Consensus       264 ~~V~~P~~l~~~~~~~l  280 (291)
T PRK14299        264 VRITIPTRPTPEEERLY  280 (291)
T ss_pred             EEEECCCCCCHHHHHHH
Confidence            99999998888776654

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=5.7e-10  Score=94.53  Aligned_cols=65  Identities=28%  Similarity=0.664  Sum_probs=58.4

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhh
Q 038604            2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIY   67 (315)
Q Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~y   67 (315)
                      +.|+|+||.|.++.+.++||+.||+|++..|||+|++ +.+.|...|.-+.+||.+|-|+.-|...
T Consensus        52 nLNpfeVLqIdpev~~edikkryRklSilVHPDKN~D-d~~rAqkAFdivkKA~k~l~n~~~rkr~  116 (250)
T KOG1150|consen   52 NLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPD-DAERAQKAFDIVKKAYKLLENDKIRKRC  116 (250)
T ss_pred             ccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcc-cHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            4689999999999999999999999999999999998 5578889999999999999998754433

>PRK10767 chaperone protein DnaJ; Provisional

Probab=98.95  E-value=1.2e-09  Score=104.25  Aligned_cols=86  Identities=15%  Similarity=0.149  Sum_probs=75.2

Q ss_pred             ccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCC-CCCCCcEEEE
Q 038604          167 KKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEP-GIIAADLIFI  245 (315)
Q Consensus       167 ~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~-g~~~GDL~v~  245 (315)
                      +.+.||++.++|||.+|+.|+++.|...      +|       +++|.||+|+.+|++++|+|+|.+.+ +...|||||+
T Consensus       259 R~G~DL~~~~~Isl~eAl~G~~~~i~~l------dG-------~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~  325 (371)
T PRK10767        259 RDGNDLYCEVPISFTTAALGGEIEVPTL------DG-------RVKLKIPEGTQTGKLFRLRGKGVKSVRSGARGDLYCQ  325 (371)
T ss_pred             EecCCEEEEEEeCHHHHhCCCeEEEecC------CC-------cEEEEeCCCCCCCCEEEECCCCcCCCCCCCCCCEEEE
Confidence            4578999999999999999999888654      56       68999999999999999999999854 3457999999


Q ss_pred             EEecCCCCeeecCCCeEEEE
Q 038604          246 VDEKPHALYRRDGNDLVVGQ  265 (315)
Q Consensus       246 i~v~~h~~f~R~g~dL~~~~  265 (315)
                      |+|..|+.+++++.+|+.++
T Consensus       326 ~~v~~P~~l~~~~~~ll~~l  345 (371)
T PRK10767        326 VVVETPVNLTKRQKELLEEF  345 (371)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            99999999999998877654

>PRK14298 chaperone protein DnaJ; Provisional

Probab=98.95  E-value=1.2e-09  Score=104.45  Aligned_cols=86  Identities=16%  Similarity=0.182  Sum_probs=74.7

Q ss_pred             ccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCCC-CCCCcEEEE
Q 038604          167 KKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPG-IIAADLIFI  245 (315)
Q Consensus       167 ~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~g-~~~GDL~v~  245 (315)
                      +.+.||++.++|||.||+.|+++.|...      +|       .++|.||+|+.+|++++|+|+|.+..+ ...|||||+
T Consensus       262 R~G~DL~~~~~Isl~eAl~G~~~~i~tl------dG-------~i~v~ip~g~~~g~~lri~g~G~p~~~~~~~GDL~V~  328 (377)
T PRK14298        262 RVGDDIISEIPISFTQAALGADIMVPTL------YG-------KVKMNIPPGTQTHSVFRLKDKGMPRLHGHGKGDQLVK  328 (377)
T ss_pred             EEcCcEEEEEEeCHHHHhCCCeEEEecC------CC-------CEEEEeCCCcccCCEEEECCCCCCCCCCCCCCCEEEE
Confidence            4678999999999999999999888765      56       378999999999999999999998543 457999999


Q ss_pred             EEecCCCCeeecCCCeEEEE
Q 038604          246 VDEKPHALYRRDGNDLVVGQ  265 (315)
Q Consensus       246 i~v~~h~~f~R~g~dL~~~~  265 (315)
                      |+|..|+.+++++.+|+.++
T Consensus       329 ~~V~~P~~ls~~~~~ll~~l  348 (377)
T PRK14298        329 VIVKTPTKLTQEQKELLREF  348 (377)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            99999999999888776553

>PRK14284 chaperone protein DnaJ; Provisional

Probab=98.94  E-value=1.7e-09  Score=103.93  Aligned_cols=87  Identities=15%  Similarity=0.172  Sum_probs=73.3

Q ss_pred             cccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCC-CcEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCCC-CCCCcEE
Q 038604          166 FKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSV-GKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPG-IIAADLI  243 (315)
Q Consensus       166 ~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~-G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~g-~~~GDL~  243 (315)
                      .|.+.||++.++|||.||+.|++++|...      + |      ..++|.||+|+.+|++|+|+|+|++..+ ..+||||
T Consensus       274 ~R~G~DL~~~~~Isl~eAl~G~~~~v~tl------d~g------~~i~v~Ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~  341 (391)
T PRK14284        274 ERRGDDLILELPIGFVDAALGMKKEIPTL------LKE------GTCRLTIPEGIQSGTILKVRGQGFPNVHGKGRGDLL  341 (391)
T ss_pred             eeecCCEEEEEEecHHHHhCCCeEEEeec------CCC------cEEEEEECCccCCCeEEEECCCCCCCCCCCCCCcEE
Confidence            35688999999999999999999988754      3 3      3789999999999999999999998643 4689999


Q ss_pred             EEEEecCCCCeeecCCCeEEE
Q 038604          244 FIVDEKPHALYRRDGNDLVVG  264 (315)
Q Consensus       244 v~i~v~~h~~f~R~g~dL~~~  264 (315)
                      |+|+|..++.++.+...|+..
T Consensus       342 V~~~v~~P~~l~~~q~~ll~~  362 (391)
T PRK14284        342 VRISVETPQNLSEEQKELLRQ  362 (391)
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            999999998887776655433

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=98.90  E-value=2.6e-09  Score=101.41  Aligned_cols=82  Identities=17%  Similarity=0.215  Sum_probs=70.9

Q ss_pred             ccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCCC-CCCCcEEEE
Q 038604          167 KKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPG-IIAADLIFI  245 (315)
Q Consensus       167 ~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~g-~~~GDL~v~  245 (315)
                      +++.||++.+.|||.||+.|+++.|...      +|       .++|.||+|+.+|++++|+|+|++.++ ..+|||||+
T Consensus       264 r~g~DL~~~~~isl~eAl~G~~~~i~~l------dG-------~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~i~  330 (354)
T TIGR02349       264 RDGNDLYIEVPISFTQAILGGEIEVPTL------DG-------DVKLKIPAGTQSGTVFRLKGKGVPRLRGNGRGDLLVT  330 (354)
T ss_pred             EecCCEEEEEEeCHHHHhCCCeEEEecC------Cc-------eEEEEECCcccCCcEEEECCCCcCCCCCCCCCCEEEE
Confidence            4577999999999999999999888764      56       689999999999999999999998643 368999999


Q ss_pred             EEecCCCCeeecCCCe
Q 038604          246 VDEKPHALYRRDGNDL  261 (315)
Q Consensus       246 i~v~~h~~f~R~g~dL  261 (315)
                      |.|..++.++++..++
T Consensus       331 ~~v~~P~~l~~~~~~~  346 (354)
T TIGR02349       331 VKVETPKNLSKEQKEL  346 (354)
T ss_pred             EEEECCCCCCHHHHHH
Confidence            9999998887766544

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14287 chaperone protein DnaJ; Provisional

Probab=98.90  E-value=2.3e-09  Score=102.26  Aligned_cols=86  Identities=15%  Similarity=0.174  Sum_probs=72.9

Q ss_pred             cccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCC-CCCCCcEEE
Q 038604          166 FKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEP-GIIAADLIF  244 (315)
Q Consensus       166 ~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~-g~~~GDL~v  244 (315)
                      .+.+.||++.+.|||.||+.|+++.|...      +|       .++|+||+|+.+|++++|+|+|.+.. +...|||||
T Consensus       258 ~R~G~DL~~~~~Isl~eAl~G~~~~i~~l------dg-------~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~V  324 (371)
T PRK14287        258 ERDGDDIYCEMPLTFPQVALGDEIEVPTL------NG-------KVKLKIPAGTQTGTSFRLRGKGVPNVHGRGQGDQHV  324 (371)
T ss_pred             EEecCCeEEEEeccHHHHhCCCEEEEEcC------CC-------CEEEEECCCccCCcEEEEcCCCccCCCCCCCCCEEE
Confidence            35678999999999999999999888764      56       47999999999999999999999854 345799999


Q ss_pred             EEEecCCCCeeecCCCeEEE
Q 038604          245 IVDEKPHALYRRDGNDLVVG  264 (315)
Q Consensus       245 ~i~v~~h~~f~R~g~dL~~~  264 (315)
                      +|+|..|+.++++...|+.+
T Consensus       325 ~~~v~~P~~l~~~q~~ll~~  344 (371)
T PRK14287        325 QVRVVTPKNLTEKEKELMRE  344 (371)
T ss_pred             EEEEEcCCCCCHHHHHHHHH
Confidence            99999999888777655443

>PRK14279 chaperone protein DnaJ; Provisional

Probab=98.90  E-value=2.7e-09  Score=102.45  Aligned_cols=81  Identities=16%  Similarity=0.166  Sum_probs=68.9

Q ss_pred             cccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCCCCCCCcEEEE
Q 038604          166 FKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPGIIAADLIFI  245 (315)
Q Consensus       166 ~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~g~~~GDL~v~  245 (315)
                      .+++.||++.++|||.+|+.|.++.|...      +|       .++|+||+|+++|++|+|+|+|++..+..+|||||+
T Consensus       289 ~R~G~DL~~~~~Isl~eAl~G~~~~v~~l------dg-------~i~v~Ip~g~~~g~~iri~g~G~p~~~~~~GDL~I~  355 (392)
T PRK14279        289 GRDGDDLTVTVPVSFTELALGSTLSVPTL------DG-------PVGVKVPAGTADGRILRVRGRGVPKRSGGAGDLLVT  355 (392)
T ss_pred             eeecCcEEEEEEccHHHHcCCceEEEEcC------Cc-------eEEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEE
Confidence            35678999999999999999998888764      55       489999999999999999999998766668999999


Q ss_pred             EEecCCCCeeecCC
Q 038604          246 VDEKPHALYRRDGN  259 (315)
Q Consensus       246 i~v~~h~~f~R~g~  259 (315)
                      |+|.-++.+..+..
T Consensus       356 ~~v~~P~~Ls~~q~  369 (392)
T PRK14279        356 VKVAVPPNLDGAAA  369 (392)
T ss_pred             EEEECCCCCCHHHH
Confidence            99998876544443

>PRK14300 chaperone protein DnaJ; Provisional

Probab=98.89  E-value=2.9e-09  Score=101.70  Aligned_cols=84  Identities=15%  Similarity=0.240  Sum_probs=71.1

Q ss_pred             cccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCC-CCCCCcEEE
Q 038604          166 FKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEP-GIIAADLIF  244 (315)
Q Consensus       166 ~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~-g~~~GDL~v  244 (315)
                      .+++.||++.++|+|.+|+.|+++.|...      +|      +.++|.||+|+++|++|+|+|+|++.+ +..+|||||
T Consensus       261 ~R~G~Dl~~~~~Isl~~Al~G~~~~i~~l------dg------~~i~v~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V  328 (372)
T PRK14300        261 KVDGANLHCKLPISFVNAALGGEIEVPVI------EG------GKVNLTIPAGTQNGDQLRLRSKGMSKMRSTIRGDMLT  328 (372)
T ss_pred             EEecCCEEEEEecCHHHHhCCCEEEEecC------CC------CEEEEEECCccCCCcEEEECCCCCCCCCCCCCCCEEE
Confidence            35678999999999999999999888875      55      479999999999999999999999864 356799999


Q ss_pred             EEEecCCCCeeecCCCe
Q 038604          245 IVDEKPHALYRRDGNDL  261 (315)
Q Consensus       245 ~i~v~~h~~f~R~g~dL  261 (315)
                      +|+|..|..++-+...|
T Consensus       329 ~~~v~~P~~ls~~qk~~  345 (372)
T PRK14300        329 HIHVEVPKNLSKRQREL  345 (372)
T ss_pred             EEEEECCCCCCHHHHHH
Confidence            99999998766554433

>PRK14301 chaperone protein DnaJ; Provisional

Probab=98.89  E-value=3.2e-09  Score=101.38  Aligned_cols=85  Identities=15%  Similarity=0.145  Sum_probs=71.8

Q ss_pred             cccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCCC-CCCCcEEE
Q 038604          166 FKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPG-IIAADLIF  244 (315)
Q Consensus       166 ~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~g-~~~GDL~v  244 (315)
                      .+.+.||++.++|||.+|+.|.++.|...      +|       .++|.||+|+++|++|+|+|+|.+.++ ..+|||||
T Consensus       260 ~r~G~DL~~~~~Isl~eAl~G~~~~v~tl------dG-------~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~I  326 (373)
T PRK14301        260 QRQGQDLVVTQEISFVQAALGDRIEVPTL------DD-------PVTLDIPKGTQSGEVFRLRGKGLPYLGSSQKGDLLV  326 (373)
T ss_pred             eeecCcEEEEEEecHHHHhCCCeEEEecC------Cc-------cEEEEECCCcCCCcEEEEcCCCCCCCCCCCCCCEEE
Confidence            35678999999999999999999888765      56       489999999999999999999998644 45799999


Q ss_pred             EEEecCCCCeeecCCCeEE
Q 038604          245 IVDEKPHALYRRDGNDLVV  263 (315)
Q Consensus       245 ~i~v~~h~~f~R~g~dL~~  263 (315)
                      +|+|..|+.++.+..+|+.
T Consensus       327 ~~~V~~P~~l~~~q~~~l~  345 (373)
T PRK14301        327 EVSVVTPTKLTKRQEELLR  345 (373)
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            9999999877766655443

>PRK14288 chaperone protein DnaJ; Provisional

Probab=98.87  E-value=3.4e-09  Score=101.06  Aligned_cols=84  Identities=15%  Similarity=0.171  Sum_probs=71.7

Q ss_pred             cccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCCCC-CCCcEEE
Q 038604          166 FKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPGI-IAADLIF  244 (315)
Q Consensus       166 ~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~g~-~~GDL~v  244 (315)
                      .+.+.||++.++|||.||+.|+++.|...      +|      ..++|.||+|+++|++++|+|+|.+.++. ..|||||
T Consensus       254 ~R~G~DL~~~~~Isl~eAllG~~i~v~tL------dG------~~l~i~i~~~~~~g~~~~i~g~G~p~~~~~~~GDL~v  321 (369)
T PRK14288        254 KREGCDLFIEAPVFFTTIALGHTIKVPSL------KG------DELELKIPRNARDRQTFAFRNEGVKHPESSYRGSLIV  321 (369)
T ss_pred             EEeCCEEEEEEecCHHHHhcCCEEEeecC------CC------CEEEEEeCCCCCCCcEEEEcCCCCCCCCCCCCCCEEE
Confidence            35688999999999999999999888876      67      36899999999999999999999986554 4699999


Q ss_pred             EEEecCCCCeeecCCCe
Q 038604          245 IVDEKPHALYRRDGNDL  261 (315)
Q Consensus       245 ~i~v~~h~~f~R~g~dL  261 (315)
                      +|.|..|+.++.+...|
T Consensus       322 ~~~v~~P~~ls~~q~~~  338 (369)
T PRK14288        322 ELQVIYPKSLNKEQQEL  338 (369)
T ss_pred             EEEEECCCCCCHHHHHH
Confidence            99999998776655433

>PRK14295 chaperone protein DnaJ; Provisional

Probab=98.87  E-value=3.7e-09  Score=101.45  Aligned_cols=82  Identities=18%  Similarity=0.220  Sum_probs=69.5

Q ss_pred             cccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCCCCCCCcEEEE
Q 038604          166 FKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPGIIAADLIFI  245 (315)
Q Consensus       166 ~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~g~~~GDL~v~  245 (315)
                      .+.+.||++.++|||.+|+.|++++|...      +|      +.++|.||+|+++|++|+|+|+|.+..++.+|||||+
T Consensus       282 ~R~G~DL~~~~~Isl~eAl~G~~~~I~tl------dG------~~~~v~ip~g~~~g~~iri~G~G~p~~~~~~GDL~i~  349 (389)
T PRK14295        282 GRSGDNLTVTVPVTFPEAALGAEVRVPTL------GG------PPVTVKLPPGTPNGRVLRVRGKGAVRKDGTRGDLLVT  349 (389)
T ss_pred             EEecCCEEEEEeecHHHHhCCCeEEEECC------CC------CEEEEEECCccCCCcEEEECCCCcCCCCCCCCCEEEE
Confidence            35678999999999999999999888654      56      4799999999999999999999998655668999999


Q ss_pred             EEecCCCCeeecCC
Q 038604          246 VDEKPHALYRRDGN  259 (315)
Q Consensus       246 i~v~~h~~f~R~g~  259 (315)
                      |.|.-+....-...
T Consensus       350 ~~v~~P~~Ls~~qk  363 (389)
T PRK14295        350 VEVAVPKDLSGKAR  363 (389)
T ss_pred             EEEECCCCCCHHHH
Confidence            99998876554433

>PRK14293 chaperone protein DnaJ; Provisional

Probab=98.83  E-value=4e-09  Score=100.82  Aligned_cols=86  Identities=16%  Similarity=0.170  Sum_probs=73.9

Q ss_pred             ccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCCCC--CCCcEEE
Q 038604          167 KKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPGI--IAADLIF  244 (315)
Q Consensus       167 ~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~g~--~~GDL~v  244 (315)
                      +.+.|+.+.++|||.||+.|+++.|...      +|       .++|.||+|+++|++++|+|+|.+.++.  ..|||||
T Consensus       264 r~g~DL~~~~~Isl~eAl~G~~~~i~~l------dG-------~~~i~ip~~~~~g~~~ri~g~G~p~~~~~~~~GDL~v  330 (374)
T PRK14293        264 RDGINILSEIKISYLQAILGDTLEVDTV------DG-------PVELTIPAGTQPNTVLTLENKGVPRLGNPVARGDHLI  330 (374)
T ss_pred             hhhhceEEEeccCHHHHhCCCEEEecCC------CC-------CEEEEeCCCCCCCCEEEECCCCCCCCCCCCCcCCEEE
Confidence            4567899999999999999999888875      56       3689999999999999999999986443  4799999


Q ss_pred             EEEecCCCCeeecCCCeEEEE
Q 038604          245 IVDEKPHALYRRDGNDLVVGQ  265 (315)
Q Consensus       245 ~i~v~~h~~f~R~g~dL~~~~  265 (315)
                      +|.|..|+.+++++.+|+..+
T Consensus       331 ~~~v~~P~~l~~~~~~l~~~l  351 (374)
T PRK14293        331 TVKVKIPTRISDEERELLEKL  351 (374)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            999999999999888776543

>PRK14286 chaperone protein DnaJ; Provisional

Probab=98.83  E-value=6.8e-09  Score=99.09  Aligned_cols=85  Identities=18%  Similarity=0.154  Sum_probs=71.1

Q ss_pred             cccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCCC-CCCCcEEE
Q 038604          166 FKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPG-IIAADLIF  244 (315)
Q Consensus       166 ~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~g-~~~GDL~v  244 (315)
                      .+.+.||++.+.|+|.||+.|+++.|...      +|      +.++|.||+|+++|++++|+|+|.+..+ ...|||||
T Consensus       266 ~R~G~DL~~~~~Isl~eAl~G~~~~i~tl------dG------~~i~v~ip~g~~~g~~~ri~G~G~P~~~~~~~GDL~V  333 (372)
T PRK14286        266 ERQGNDLILVRKISLAQAILGAEIEVPTI------DG------KKAKMKIPEGTESGQVFRLKGHGMPYLGAYGKGDQHV  333 (372)
T ss_pred             EEecCCEEEEEEECHHHHhCCCEEEEeCC------CC------CEEEEEeCCccCCCcEEEECCCCCCCCCCCCCCcEEE
Confidence            35678999999999999999999888765      67      4789999999999999999999998543 45799999


Q ss_pred             EEEecCCCCeeecCCCeE
Q 038604          245 IVDEKPHALYRRDGNDLV  262 (315)
Q Consensus       245 ~i~v~~h~~f~R~g~dL~  262 (315)
                      +|+|.-++.++.+..+|+
T Consensus       334 ~~~V~~P~~Ls~~qk~~l  351 (372)
T PRK14286        334 IVKIEIPKKITRRQRELI  351 (372)
T ss_pred             EEEEECCCCCCHHHHHHH
Confidence            999998886665554443

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=98.82  E-value=1.6e-08  Score=94.24  Aligned_cols=79  Identities=18%  Similarity=0.134  Sum_probs=68.1

Q ss_pred             cccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCCCCCCCcEEEE
Q 038604          166 FKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPGIIAADLIFI  245 (315)
Q Consensus       166 ~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~g~~~GDL~v~  245 (315)
                      .+.+.||++.++|||.+|+.|+++.|...      +|       .++|+||+|+.+|++++|+|+|.+.++ ..|||+|+
T Consensus       205 ~r~g~DL~~~~~Isl~~al~G~~~~i~~~------~g-------~v~v~ip~g~~~g~~~ri~g~G~p~~~-~~GdL~v~  270 (306)
T PRK10266        205 DIVGQDLEIVVPLAPWEAALGAKVTVPTL------KE-------SILLTIPPGSQAGQRLRVKGKGLVSKK-QTGDLYAV  270 (306)
T ss_pred             EEeCCceEEEEecCHHHHhCCCEEEeeCC------Cc-------cEEEEeCCCcCCCCEEEECCCCCCCCC-CCCCEEEE
Confidence            35688999999999999999999988764      45       589999999999999999999998654 57999999


Q ss_pred             EEecCCCCeeecC
Q 038604          246 VDEKPHALYRRDG  258 (315)
Q Consensus       246 i~v~~h~~f~R~g  258 (315)
                      |+|..|+.+.-+.
T Consensus       271 ~~v~~P~~l~~~q  283 (306)
T PRK10266        271 LKIVMPPKPDEKT  283 (306)
T ss_pred             EEEECCCCCCHHH
Confidence            9999998765433

>PRK14291 chaperone protein DnaJ; Provisional

Probab=98.82  E-value=1.8e-08  Score=96.59  Aligned_cols=74  Identities=23%  Similarity=0.256  Sum_probs=65.5

Q ss_pred             ccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCCC-CCCCcEEEE
Q 038604          167 KKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPG-IIAADLIFI  245 (315)
Q Consensus       167 ~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~g-~~~GDL~v~  245 (315)
                      +.+.||++.++|||+||+.|+++.|...      +|      +.++|.||+|+++|++|+|+|+|++.++ ..+|||||+
T Consensus       272 r~G~DL~~~~~Isl~eAl~G~~~~i~~l------dG------~~l~V~Ip~g~~~G~~i~i~G~G~p~~~~~~~GDL~V~  339 (382)
T PRK14291        272 RRGDNLYLDVNITVAEAVLGTELEVPLL------DG------KKEKVKIPPGTKEGDKIRVPGKGMPRLKGSGYGDLVVR  339 (382)
T ss_pred             eecCCeEEEEEeeHHHHhCCCEEEEecC------CC------CEEEEEECCccCCCCEEEECCCCCCCCCCCCCCCEEEE
Confidence            4578999999999999999999998875      67      4789999999999999999999998643 457999999


Q ss_pred             EEecCCC
Q 038604          246 VDEKPHA  252 (315)
Q Consensus       246 i~v~~h~  252 (315)
                      |+|.-+.
T Consensus       340 ~~V~~P~  346 (382)
T PRK14291        340 VHIDVPK  346 (382)
T ss_pred             EEEEeCC
Confidence            9999775

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=7.2e-09  Score=91.76  Aligned_cols=68  Identities=31%  Similarity=0.453  Sum_probs=57.5

Q ss_pred             CCcccccCCCC---CCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccc
Q 038604            3 FDYYNILKVNR---NANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLY   70 (315)
Q Consensus         3 ~~~y~iLgv~~---~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~   70 (315)
                      .|+|.+||++.   -|++.+|.+|+++.+.+||||+....-.....+-|+.|+.||++|+|+.+|.+||..
T Consensus        43 ~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~  113 (379)
T COG5269          43 VDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSN  113 (379)
T ss_pred             hhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccc
Confidence            58999999987   478999999999999999999972101134567899999999999999999999974

>PRK14276 chaperone protein DnaJ; Provisional

Probab=98.79  E-value=9.6e-09  Score=98.38  Aligned_cols=80  Identities=16%  Similarity=0.163  Sum_probs=68.1

Q ss_pred             ccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCCC-CCCCcEEEE
Q 038604          167 KKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPG-IIAADLIFI  245 (315)
Q Consensus       167 ~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~g-~~~GDL~v~  245 (315)
                      +.+.||++.++|||.||+.|+++.|...      +|       .++|.||+|+++|++++|+|+|++..+ ..+|||||+
T Consensus       267 R~G~DL~~~~~Isl~eAl~G~~~~v~tl------dg-------~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~  333 (380)
T PRK14276        267 RDGSTIYYTLPISFVQAALGDTVEVPTV------HG-------DVELKIPAGTQTGKKFRLRGKGAPKLRGGGNGDQHVT  333 (380)
T ss_pred             eecceEEEEEecCHHHHhCCCeEEEEcC------CC-------cEEEEECCCCCCCCEEEECCCCcCCCCCCCCCCEEEE
Confidence            5578999999999999999999988865      56       479999999999999999999998643 457999999


Q ss_pred             EEecCCCCeeecCC
Q 038604          246 VDEKPHALYRRDGN  259 (315)
Q Consensus       246 i~v~~h~~f~R~g~  259 (315)
                      |+|.-++.+..+..
T Consensus       334 ~~v~~P~~l~~~q~  347 (380)
T PRK14276        334 VNIVTPTKLNDAQK  347 (380)
T ss_pred             EEEECCCCCCHHHH
Confidence            99998876554443

>PRK14280 chaperone protein DnaJ; Provisional

Probab=98.78  E-value=1.3e-08  Score=97.46  Aligned_cols=81  Identities=15%  Similarity=0.190  Sum_probs=68.0

Q ss_pred             cccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCC-CCCCCcEEE
Q 038604          166 FKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEP-GIIAADLIF  244 (315)
Q Consensus       166 ~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~-g~~~GDL~v  244 (315)
                      .+.+.||++.+.|||.||+.|+++.|...      +|       .++|.||+|+.+|++++|+|+|.+.. +...|||||
T Consensus       263 ~R~G~DL~~~~~Isl~eAl~G~~~~i~tl------dg-------~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v  329 (376)
T PRK14280        263 ERDGDDIYCEMPLTFAQAALGDEIEVPTL------HG-------KVKLKIPAGTQTGTQFRLKGKGVPNVRGYGQGDQYV  329 (376)
T ss_pred             EEecCCEEEEEecCHHHHhCCCEEEEecC------Cc-------eEEEEECCCCCCCcEEEEcCCCCCCCCCCCCCCEEE
Confidence            35688999999999999999998888765      56       47999999999999999999999853 345799999


Q ss_pred             EEEecCCCCeeecCC
Q 038604          245 IVDEKPHALYRRDGN  259 (315)
Q Consensus       245 ~i~v~~h~~f~R~g~  259 (315)
                      +|+|..++.++.+..
T Consensus       330 ~~~v~~P~~Ls~~q~  344 (376)
T PRK14280        330 VVRVVTPTKLTDRQK  344 (376)
T ss_pred             EEEEECCCCCCHHHH
Confidence            999998876554443

>PRK14281 chaperone protein DnaJ; Provisional

Probab=98.77  E-value=1.3e-08  Score=98.02  Aligned_cols=81  Identities=19%  Similarity=0.168  Sum_probs=68.0

Q ss_pred             cccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCC-CCCCCcEEE
Q 038604          166 FKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEP-GIIAADLIF  244 (315)
Q Consensus       166 ~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~-g~~~GDL~v  244 (315)
                      .+.+.||++.++|||.||+.|+++.|...      +|       .++|.||+|+++|++++|+|+|.+.+ +...|||||
T Consensus       282 ~R~G~DL~~~~~Isl~eAl~G~~~~i~tl------dg-------~i~v~ip~g~~~G~~~ri~g~G~P~~~~~~~GDL~V  348 (397)
T PRK14281        282 VRNGDDVIYNLAVSYPDLVLGTKVEVPTL------DG-------AVKLTIPAGTQPETMLRIPGKGIGHLRGSGRGDQYV  348 (397)
T ss_pred             EEecCCEEEEEEecHHHHhcCCeEEeecC------Cc-------cEEEEeCCccCCCcEEEEcCCCCCCCCCCCCCCEEE
Confidence            35678999999999999999999888865      56       47999999999999999999999853 345799999


Q ss_pred             EEEecCCCCeeecCC
Q 038604          245 IVDEKPHALYRRDGN  259 (315)
Q Consensus       245 ~i~v~~h~~f~R~g~  259 (315)
                      +|+|.-+..++.+..
T Consensus       349 ~~~V~~P~~Ls~~qk  363 (397)
T PRK14281        349 RVNVFVPKEVSHQDK  363 (397)
T ss_pred             EEEEEcCCCCCHHHH
Confidence            999998876554443

>PRK14297 chaperone protein DnaJ; Provisional

Probab=98.75  E-value=1.6e-08  Score=96.92  Aligned_cols=79  Identities=15%  Similarity=0.060  Sum_probs=67.2

Q ss_pred             ccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCC-CCCCCcEEEE
Q 038604          167 KKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEP-GIIAADLIFI  245 (315)
Q Consensus       167 ~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~-g~~~GDL~v~  245 (315)
                      +.+.||++.++|||.||+.|+++.|...      +|       .++|.||+|+.+|++++|+|+|.+.. +...|||||+
T Consensus       269 R~G~DL~~~~~Isl~eAl~G~~~~i~~l------dg-------~~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~  335 (380)
T PRK14297        269 RKGFDIYIDKHISFAKAALGTEIKVPTV------DG-------EVKYEVPAGTQPGTVFRLKGKGVPRVNSTGRGNQYVT  335 (380)
T ss_pred             EeCCCEEEEEEeCHHHHhCCCcEEEEcC------CC-------cEEEEECCCcCCCCEEEEcCCCcCCCCCCCCCcEEEE
Confidence            4678999999999999999999888865      56       47999999999999999999999853 3457999999


Q ss_pred             EEecCCCCeeecC
Q 038604          246 VDEKPHALYRRDG  258 (315)
Q Consensus       246 i~v~~h~~f~R~g  258 (315)
                      |.|.-+..++.+.
T Consensus       336 ~~v~~P~~ls~~q  348 (380)
T PRK14297        336 VIVDIPKKLNSKQ  348 (380)
T ss_pred             EEEEcCCCCCHHH
Confidence            9999887555444

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.75  E-value=1.4e-08  Score=95.38  Aligned_cols=84  Identities=17%  Similarity=0.185  Sum_probs=71.7

Q ss_pred             ccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCCC-CCCCCCcEEEE
Q 038604          167 KKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQE-PGIIAADLIFI  245 (315)
Q Consensus       167 ~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~-~g~~~GDL~v~  245 (315)
                      |.+.||+..++|++.+|..|.+.++...      +|       .++|+||+|+..|++++|+|+|.+. .+...|||||+
T Consensus       261 R~g~dL~~~~~Is~~~AalG~~i~vptl------~g-------~~~l~ip~Gtq~G~~~rl~gkG~p~~~~~~~GDl~v~  327 (371)
T COG0484         261 RDGDDLYCEVPISFTEAALGGEIEVPTL------DG-------RVKLKIPAGTQTGEVFRLRGKGMPKLRSGGRGDLYVR  327 (371)
T ss_pred             ECCCceEeccccCHHHHhcCCEEEEEec------CC-------CEEEecCCCCccCcEEEEcCCCccccCCCCcCCEEEE
Confidence            4567999999999999999998888876      67       3999999999999999999999994 55667999999


Q ss_pred             EEecCCCCeeecCCCeEE
Q 038604          246 VDEKPHALYRRDGNDLVV  263 (315)
Q Consensus       246 i~v~~h~~f~R~g~dL~~  263 (315)
                      |+|.-++.+......|+-
T Consensus       328 v~v~~P~~ls~~q~~lL~  345 (371)
T COG0484         328 VKVETPKNLSDEQKELLE  345 (371)
T ss_pred             EEEEcCCCCCHHHHHHHH
Confidence            999999887665555443

>PRK14278 chaperone protein DnaJ; Provisional

Probab=98.73  E-value=2.2e-08  Score=95.88  Aligned_cols=84  Identities=14%  Similarity=0.156  Sum_probs=68.8

Q ss_pred             cccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCC-CCCCCcEEE
Q 038604          166 FKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEP-GIIAADLIF  244 (315)
Q Consensus       166 ~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~-g~~~GDL~v  244 (315)
                      .+.+.||++.++|+|.+|+.|+++.|...      ++      ..++|.||+|+++|++++|+|+|.+.. +...|||||
T Consensus       259 ~R~G~DL~~~~~Isl~eAl~G~~~~i~tl------d~------~~i~v~ip~g~~~g~~lrl~g~G~p~~~~~~~GDL~V  326 (378)
T PRK14278        259 VRDGDDLHCTVSVPMVDAALGTTVTVEAI------LD------GPSEITIPPGTQPGSVITLRGRGMPHLRSGGRGDLHA  326 (378)
T ss_pred             EEcCCCEEEEEecCHHHHhcCCeEEEecC------CC------CeEEEEeCCCcCCCcEEEECCCCCCCCCCCCCCCEEE
Confidence            35688999999999999999998888754      33      378999999999999999999999853 345799999


Q ss_pred             EEEecCCCCeeecCCCe
Q 038604          245 IVDEKPHALYRRDGNDL  261 (315)
Q Consensus       245 ~i~v~~h~~f~R~g~dL  261 (315)
                      +|+|.-+..++.+...|
T Consensus       327 ~~~V~~P~~Ls~~qk~~  343 (378)
T PRK14278        327 HVEVVVPTRLDHEDIEL  343 (378)
T ss_pred             EEEEEcCCCCCHHHHHH
Confidence            99999887555444333

>PRK14292 chaperone protein DnaJ; Provisional

Probab=98.73  E-value=1.5e-08  Score=96.82  Aligned_cols=84  Identities=14%  Similarity=0.150  Sum_probs=70.5

Q ss_pred             cccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCC-CCCCCcEEE
Q 038604          166 FKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEP-GIIAADLIF  244 (315)
Q Consensus       166 ~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~-g~~~GDL~v  244 (315)
                      .+.+.||+..++|+|.||+.|+++.|...      +|       .++|.||+|+.+|++++|+|+|++.+ +..+|||||
T Consensus       258 ~r~g~dL~~~~~isl~eAl~G~~~~i~tl------dG-------~~~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V  324 (371)
T PRK14292        258 RREQEHLIYEARIGFAKAALGGQITVPTL------DG-------PQVIEVKPGTQHGDLHRLRGQGMPRLQGAGTGDLIV  324 (371)
T ss_pred             ccchhceeEEeccCHHHHhCCCeEEEECC------CC-------CEEEecCCCcCCCcEEEECCCCCCCCCCCCCCCEEE
Confidence            34577999999999999999999888855      56       23699999999999999999999854 445799999


Q ss_pred             EEEecCCCCeeecCCCeE
Q 038604          245 IVDEKPHALYRRDGNDLV  262 (315)
Q Consensus       245 ~i~v~~h~~f~R~g~dL~  262 (315)
                      +|.|..|+.++.+...|+
T Consensus       325 ~~~v~~P~~l~~~q~~ll  342 (371)
T PRK14292        325 EYEIAVPKQLSPEAREAL  342 (371)
T ss_pred             EEEEECCCCCCHHHHHHH
Confidence            999999987776665544

>PRK14277 chaperone protein DnaJ; Provisional

Probab=98.69  E-value=3.1e-08  Score=95.08  Aligned_cols=81  Identities=17%  Similarity=0.150  Sum_probs=67.3

Q ss_pred             ccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCCC-CCCCcEEEE
Q 038604          167 KKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPG-IIAADLIFI  245 (315)
Q Consensus       167 ~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~g-~~~GDL~v~  245 (315)
                      +.+.||++.++|||.||+.|+++.|...      +|       .++|.||+|+.+|++++|+|+|.+..+ ...|||||+
T Consensus       276 R~G~DL~~~~~Isl~eAl~G~~~~i~tl------dG-------~~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~  342 (386)
T PRK14277        276 REGYNVYLEMPITFTDAALGGEIEIPTL------DG-------KVKFTIPEGTQTGTKFRLRGKGIPHLRGRGRGDQIVK  342 (386)
T ss_pred             EecCCEEEEEEcCHHHHhCCCEEEEEcC------CC-------CEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCEEEE
Confidence            4577999999999999999999888765      67       379999999999999999999998533 357999999


Q ss_pred             EEecCCCCeeecCCC
Q 038604          246 VDEKPHALYRRDGND  260 (315)
Q Consensus       246 i~v~~h~~f~R~g~d  260 (315)
                      |+|.-++..+.+..+
T Consensus       343 ~~V~~P~~Ls~~qk~  357 (386)
T PRK14277        343 VYIEVPKKLTEKQKE  357 (386)
T ss_pred             EEEEeCCCCCHHHHH
Confidence            999977655444433

>PRK14296 chaperone protein DnaJ; Provisional

Probab=98.67  E-value=3.5e-08  Score=94.21  Aligned_cols=78  Identities=13%  Similarity=0.059  Sum_probs=66.2

Q ss_pred             CCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCC--CCCCCcEEEEE
Q 038604          169 APAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEP--GIIAADLIFIV  246 (315)
Q Consensus       169 ~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~--g~~~GDL~v~i  246 (315)
                      +.||++.++|||.||+.|+++.|...      +|       .++|.||+++++|++++|+|+|.+..  ....|||||+|
T Consensus       273 G~DL~~~~~Isl~eAllG~~~~i~tl------dG-------~~~v~ip~~t~~g~~~ri~GkGmP~~~~~~~~GDL~V~~  339 (372)
T PRK14296        273 NNDILMTYNISYLDAILGNEIIIKTL------DG-------DIKYKLPKSINSNELIIINNKGLYKSINKDKRGDLIIKV  339 (372)
T ss_pred             CCcEEEEEecCHHHHhCCCEEEeeCC------CC-------CEEEEECCccCCCcEEEEcCCCCCcCCCCCCcCCEEEEE
Confidence            68999999999999999999888865      67       37999999999999999999999732  33579999999


Q ss_pred             EecCCCCeeecCC
Q 038604          247 DEKPHALYRRDGN  259 (315)
Q Consensus       247 ~v~~h~~f~R~g~  259 (315)
                      +|.-++....+..
T Consensus       340 ~V~~P~~Ls~~q~  352 (372)
T PRK14296        340 NIVVPKNLSKKEK  352 (372)
T ss_pred             EEECCCCCCHHHH
Confidence            9998876554443

>PRK14283 chaperone protein DnaJ; Provisional

Probab=98.67  E-value=4.1e-08  Score=93.99  Aligned_cols=80  Identities=14%  Similarity=0.090  Sum_probs=66.7

Q ss_pred             ccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCC-CCCCCcEEEE
Q 038604          167 KKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEP-GIIAADLIFI  245 (315)
Q Consensus       167 ~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~-g~~~GDL~v~  245 (315)
                      +.+.||++.++|+|.+|+.|.++.|...      +|       +++|.||+|+++|++|+|+|+|.+.. +...|||||+
T Consensus       267 r~G~DL~~~~~Isl~eAl~G~~~~i~tl------dG-------~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GdL~v~  333 (378)
T PRK14283        267 REGANLYYEKPISFVQAALGDTVDVPTI------DG-------PVELKIPAGTQSGTTFRLKGHGMPSLRWSGKGNLYVK  333 (378)
T ss_pred             EecCCEEEEEecCHHHHhcCCeEEEEcC------Cc-------eEEEEeCCCCCCCCEEEECCCCCCCCCCCCCCCEEEE
Confidence            4577999999999999999999888754      55       58999999999999999999999853 3457999999


Q ss_pred             EEecCCCCeeecCC
Q 038604          246 VDEKPHALYRRDGN  259 (315)
Q Consensus       246 i~v~~h~~f~R~g~  259 (315)
                      |+|.-++..+.+..
T Consensus       334 ~~v~~P~~l~~~q~  347 (378)
T PRK14283        334 VKVVVPKKLSPKQK  347 (378)
T ss_pred             EEEEeCCCCCHHHH
Confidence            99997765544443

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=98.64  E-value=4.4e-08  Score=94.70  Aligned_cols=81  Identities=16%  Similarity=0.083  Sum_probs=67.8

Q ss_pred             cccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCC--CCCCCEEEecCCCCCCCC--CCCCc
Q 038604          166 FKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPG--WKKGTKITFPEKGNQEPG--IIAAD  241 (315)
Q Consensus       166 ~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G--~~~G~~i~~~g~G~~~~g--~~~GD  241 (315)
                      .|.+.||++.++|||.||+.|.++.|...      +|      +.++|+||+|  +++|++++|+|+|.+...  ...||
T Consensus       270 ~R~G~DL~~~~~Isl~eAllG~~i~I~tL------dG------~~l~I~ip~g~vt~pg~~~~I~geGmP~~~~~~~rGD  337 (421)
T PTZ00037        270 KREGGDLFITKKISLYEALTGFVFYITHL------DG------RKLLVNTPPGEVVKPGDIKVINNEGMPTYKSPFKKGN  337 (421)
T ss_pred             EEeCCeEEEEEeCCHHHHhcCCEEEeeCC------CC------CeEEEEeCCCcccCCCcEEEeCCCCcccCCCCCCCCC
Confidence            35688999999999999999998888765      67      3689999999  999999999999998533  35799


Q ss_pred             EEEEEEecCC--CCeeecC
Q 038604          242 LIFIVDEKPH--ALYRRDG  258 (315)
Q Consensus       242 L~v~i~v~~h--~~f~R~g  258 (315)
                      |||+|.|.-+  ..++.+.
T Consensus       338 L~V~~~V~~P~~~~Ls~~q  356 (421)
T PTZ00037        338 LYVTFEVIFPVDRKFTNEE  356 (421)
T ss_pred             EEEEEEEEcCCCCCCCHHH
Confidence            9999999987  5544433

>PRK14289 chaperone protein DnaJ; Provisional

Probab=98.62  E-value=5.6e-08  Score=93.36  Aligned_cols=78  Identities=18%  Similarity=0.174  Sum_probs=66.0

Q ss_pred             ccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCC-CCCCCcEEEE
Q 038604          167 KKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEP-GIIAADLIFI  245 (315)
Q Consensus       167 ~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~-g~~~GDL~v~  245 (315)
                      +.+.||++.+.|+|.+|+.|+.+.|...      +|       .++|.||+|+++|++++|+|+|.+.+ +..+|||||+
T Consensus       275 r~g~DL~~~~~Isl~eAl~G~~~~i~~l------dg-------~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~  341 (386)
T PRK14289        275 RDENDLIYNLLLSVPTAALGGAVEVPTI------DG-------KAKVKIEAGTQPGKVLRLRNKGLPSVNGYGTGDLLVN  341 (386)
T ss_pred             ccccceeEEeccCHHHHhCCCeEEeecC------Cc-------eEEEEECCccCCCcEEEECCCCcCCCCCCCCCcEEEE
Confidence            4567999999999999999999888875      56       47999999999999999999999854 3468999999


Q ss_pred             EEecCCCCeeec
Q 038604          246 VDEKPHALYRRD  257 (315)
Q Consensus       246 i~v~~h~~f~R~  257 (315)
                      |+|.-+...+.+
T Consensus       342 ~~v~~P~~l~~~  353 (386)
T PRK14289        342 VSVYIPETLSKE  353 (386)
T ss_pred             EEEEeCCCCCHH
Confidence            999977644433

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=98.52  E-value=2.8e-07  Score=92.68  Aligned_cols=70  Identities=47%  Similarity=0.910  Sum_probs=65.3

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhcccccccc
Q 038604            3 FDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGL   75 (315)
Q Consensus         3 ~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~   75 (315)
                      .|||+||||+++|+.++||+|||+||++||||+++.   +.+.++|++|++||++|+|+.+|+.||.||..+.
T Consensus         2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~---~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~   71 (871)
T TIGR03835         2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA---PDAASIFAEINEANDVLSNPKKRANYDKYGHDGV   71 (871)
T ss_pred             CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---hhHHHHHHHHHHHHHHhCCHHHHHHHhhhccccc
Confidence            699999999999999999999999999999999976   6788899999999999999999999999887543

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=1.4e-07  Score=81.86  Aligned_cols=55  Identities=35%  Similarity=0.634  Sum_probs=49.7

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHH-hcCC
Q 038604            3 FDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYD-VLSD   60 (315)
Q Consensus         3 ~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~-~L~d   60 (315)
                      +.||.||||...|+.++++.||..||+++|||...+   ....++|.+|.+||. ||+.
T Consensus        47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~---~adaa~f~qideafrkvlq~  102 (342)
T KOG0568|consen   47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGSE---EADAARFIQIDEAFRKVLQE  102 (342)
T ss_pred             HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCc---cccHHHHHHHHHHHHHHHHH
Confidence            368999999999999999999999999999999976   556789999999998 7764

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=1.1e-06  Score=67.40  Aligned_cols=49  Identities=33%  Similarity=0.455  Sum_probs=43.5

Q ss_pred             cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCCh
Q 038604            7 NILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDP   61 (315)
Q Consensus         7 ~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~   61 (315)
                      -||||++.++.+.||.|+||++...|||+..+      ...-.+||||+++|...
T Consensus        60 lIL~v~~s~~k~KikeaHrriM~~NHPD~GGS------PYlAsKINEAKdlLe~~  108 (112)
T KOG0723|consen   60 LILGVTPSLDKDKIKEAHRRIMLANHPDRGGS------PYLASKINEAKDLLEGT  108 (112)
T ss_pred             HHhCCCccccHHHHHHHHHHHHHcCCCcCCCC------HHHHHHHHHHHHHHhcc
Confidence            48999999999999999999999999999987      34556799999999753

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.23  E-value=1.2e-06  Score=89.90  Aligned_cols=51  Identities=33%  Similarity=0.638  Sum_probs=43.9

Q ss_pred             CcccccCCCCCC----CHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcC
Q 038604            4 DYYNILKVNRNA----NEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLS   59 (315)
Q Consensus         4 ~~y~iLgv~~~a----s~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~   59 (315)
                      +-|+||.|+-+-    ..+.||++|+|||.+|||||||+     -.++|..+|+|||.|+
T Consensus      1282 ~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPE-----GRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1282 LAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPE-----GREMFERVNKAYELLS 1336 (2235)
T ss_pred             HHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCch-----HHHHHHHHHHHHHHHH
Confidence            458999987542    34889999999999999999964     6789999999999998

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.38  E-value=0.00048  Score=64.24  Aligned_cols=74  Identities=20%  Similarity=0.191  Sum_probs=63.9

Q ss_pred             ccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCC--CCCCCEEEecCCCCCCCCCCCCcEEE
Q 038604          167 KKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPG--WKKGTKITFPEKGNQEPGIIAADLIF  244 (315)
Q Consensus       167 ~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G--~~~G~~i~~~g~G~~~~g~~~GDL~v  244 (315)
                      +++.++...+.++|.|+..|..+.+...      +|      ..+++.++||  +.+|++++++|+|++......|||||
T Consensus       249 Rrg~dL~~~~~i~l~eal~G~~~~~~~l------dG------r~l~~~~~pg~vi~~~~~~~v~~~gmp~~~~~~g~lyi  316 (337)
T KOG0712|consen  249 RRGSDLYRKLTISLVEALCGFQRVWETL------DG------RLLKLSSKPGEVISPGDTKRVEGEGMPIFRNPKGDLYI  316 (337)
T ss_pred             ecccccceeeecchhhccccceEEEEcc------CC------ceEEEecCCCceeChhHEEeecCCCcccccCCCCcEEE
Confidence            4577888999999999999988877733      67      5899999999  99999999999999965555999999


Q ss_pred             EEEecCCC
Q 038604          245 IVDEKPHA  252 (315)
Q Consensus       245 ~i~v~~h~  252 (315)
                      .+.|+-++
T Consensus       317 ~~~v~fp~  324 (337)
T KOG0712|consen  317 KFEVKFPK  324 (337)
T ss_pred             EEEEEcCC
Confidence            99999776

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=96.80  E-value=0.0013  Score=54.16  Aligned_cols=66  Identities=26%  Similarity=0.491  Sum_probs=52.2

Q ss_pred             CCcccccCCCC--CCCHHHHHHHHHHHHHHhCCCCCCC--c-chhHHHHHHHHHHHHHHhcCChhhhhhhc
Q 038604            3 FDYYNILKVNR--NANEDDLKKAYKRLAMIWHPDKNPS--H-KRTEAEAKFKQISEAYDVLSDPQKRQIYD   68 (315)
Q Consensus         3 ~~~y~iLgv~~--~as~~eIk~ayr~la~~~hPd~~~~--~-~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD   68 (315)
                      ++||.++|...  ...++.++..|.-..++.|||+...  . ....|.+...++|+||.+|.||-+|+.|=
T Consensus         8 ~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yi   78 (168)
T KOG3192|consen    8 SRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYL   78 (168)
T ss_pred             HHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            57999997654  4567777779999999999999421  1 12356778999999999999999999994

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.41  E-value=0.0018  Score=55.32  Aligned_cols=56  Identities=34%  Similarity=0.519  Sum_probs=47.3

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----cchhHHHHHHHHHHHHHHhc
Q 038604            3 FDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPS-----HKRTEAEAKFKQISEAYDVL   58 (315)
Q Consensus         3 ~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~-----~~~~~~~~~f~~i~~Ay~~L   58 (315)
                      .+.|.+|++...+...+|+++|+++...+|||+-..     +--..+.+++++|++||+.+
T Consensus       113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            478999999999999999999999999999998632     11345788899999999854

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=95.84  E-value=0.0061  Score=52.08  Aligned_cols=66  Identities=29%  Similarity=0.455  Sum_probs=50.4

Q ss_pred             CcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcc---hhHHHHHHHHHHHHHHhcCChhhhhhhcc
Q 038604            4 DYYNILKVNRNA--NEDDLKKAYKRLAMIWHPDKNPSHK---RTEAEAKFKQISEAYDVLSDPQKRQIYDL   69 (315)
Q Consensus         4 ~~y~iLgv~~~a--s~~eIk~ayr~la~~~hPd~~~~~~---~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~   69 (315)
                      |++..++..+.+  ..+.++..|+.+++.+|||+...+.   ...+.+.+..+|.||.+|.+|-+|+.|=.
T Consensus         2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~l   72 (174)
T COG1076           2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLL   72 (174)
T ss_pred             CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            445555555544  3556889999999999999986433   22355789999999999999999999844

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=95.24  E-value=0.033  Score=44.92  Aligned_cols=51  Identities=24%  Similarity=0.272  Sum_probs=37.5

Q ss_pred             ccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChh
Q 038604            6 YNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQ   62 (315)
Q Consensus         6 y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~   62 (315)
                      ..||+|++.++.++|.+.|.+|....+|++..+      ...=.+|..|.|.|..+-
T Consensus        61 ~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGS------fYLQSKV~rAKErl~~El  111 (127)
T PF03656_consen   61 RQILNVKEELSREEIQKRYKHLFKANDPSKGGS------FYLQSKVFRAKERLEQEL  111 (127)
T ss_dssp             HHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-------HHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCCCccCHHHHHHHHHHHHhccCCCcCCC------HHHHHHHHHHHHHHHHHH
Confidence            369999999999999999999999999998876      444467888998886543

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=94.64  E-value=0.044  Score=53.75  Aligned_cols=42  Identities=33%  Similarity=0.539  Sum_probs=30.6

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCc-c----hhHHHHHHHHHHHHHH
Q 038604           15 ANEDDLKKAYKRLAMIWHPDKNPSH-K----RTEAEAKFKQISEAYD   56 (315)
Q Consensus        15 as~~eIk~ayr~la~~~hPd~~~~~-~----~~~~~~~f~~i~~Ay~   56 (315)
                      .+.++|||+|||..+..||||-+.. .    +--+++.|..+++||.
T Consensus       400 Vtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn  446 (453)
T KOG0431|consen  400 VTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWN  446 (453)
T ss_pred             cCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHH
Confidence            5889999999999999999998652 1    2234555555555654

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=86.83  E-value=0.65  Score=40.04  Aligned_cols=44  Identities=14%  Similarity=0.064  Sum_probs=36.6

Q ss_pred             HhcCceeEEE--EeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEec
Q 038604          183 IYKGAKKKMR--ISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFP  228 (315)
Q Consensus       183 ~~~G~~k~i~--~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~  228 (315)
                      -|.|..+.++  -.|..|+|+| .+..++.+.+.+ .|+.+|++|++.
T Consensus       104 ~C~G~G~~i~~~~~C~~C~G~G-~v~~~~~~~~k~-~g~~~g~~it~~  149 (186)
T TIGR02642       104 RCRGTGLIQRRQRECDTCAGTG-RFRPTVEDLLKS-FGVDSGAAIVLK  149 (186)
T ss_pred             CCCCeeEEecCCCCCCCCCCcc-EEeeeEEEEEEe-eeccCCceeeHH
Confidence            5778878776  4688888999 678888889999 999999999874

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised

Probab=83.57  E-value=1.3  Score=38.42  Aligned_cols=40  Identities=25%  Similarity=0.355  Sum_probs=30.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCCh
Q 038604           12 NRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDP   61 (315)
Q Consensus        12 ~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~   61 (315)
                      +++||.+||.+|+.++..+|--|          ++.-.+|..||+.+.-.
T Consensus         1 S~~ASfeEIq~Arn~ll~~y~gd----------~~~~~~IEaAYD~ILM~   40 (194)
T PF11833_consen    1 SEDASFEEIQAARNRLLAQYAGD----------EKSREAIEAAYDAILME   40 (194)
T ss_pred             CCCCCHHHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHHHHH
Confidence            57999999999999999998221          33455799999876544

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.

>PF13446 RPT: A repeated domain in UCH-protein

Probab=83.23  E-value=2.8  Score=29.07  Aligned_cols=25  Identities=20%  Similarity=0.433  Sum_probs=22.7

Q ss_pred             cccccCCCCCCCHHHHHHHHHHHHH
Q 038604            5 YYNILKVNRNANEDDLKKAYKRLAM   29 (315)
Q Consensus         5 ~y~iLgv~~~as~~eIk~ayr~la~   29 (315)
                      =|++|||+++++.+.|-.+|+....
T Consensus         7 Ay~~Lgi~~~~~Dd~Ii~~f~~~~~   31 (62)
T PF13446_consen    7 AYEILGIDEDTDDDFIISAFQSKVN   31 (62)
T ss_pred             HHHHhCcCCCCCHHHHHHHHHHHHH
Confidence            4899999999999999999988765

>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]

Probab=82.14  E-value=1.4  Score=41.50  Aligned_cols=56  Identities=34%  Similarity=0.506  Sum_probs=42.8

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCC--cchhHHHHHHHHHHHHHHhcCChhhhhhhcc
Q 038604           14 NANEDDLKKAYKRLAMIWHPDKNPS--HKRTEAEAKFKQISEAYDVLSDPQKRQIYDL   69 (315)
Q Consensus        14 ~as~~eIk~ayr~la~~~hPd~~~~--~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~   69 (315)
                      -++..+|+.+|+..++..||++-..  .......+.|++|.+||++|++..+|...|.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~   60 (335)
T KOG0724|consen    3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDS   60 (335)
T ss_pred             cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhh
Confidence            3678899999999999999998741  0112567789999999999998665555544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	315
3agz_A	190	Crystal Structure Of Human Hsp40 Hdj1 Peptide-Bindi		6e-28
2qld_A	183	Human Hsp40 Hdj1 Length = 183		1e-27
3agx_A	181	Crystal Structure Of Human Hsp40 Hdj1 Peptide-Bindi		3e-27
2q2g_A	180	Crystal Structure Of Dimerization Domain Of Hsp40 F		2e-22
2lgw_A	99	Solution Structure Of The J Domain Of Hsj1a Length		1e-19
1hdj_A	77	Human Hsp40 (Hdj-1), Nmr Length = 77		1e-18
2ej7_A	82	Solution Structure Of The Dnaj Domain Of The Human		4e-18
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		2e-17
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		3e-17
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		3e-17
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		3e-16
2ctp_A	78	Solution Structure Of J-Domain From Human Dnaj Subf		3e-15
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		9e-15
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		2e-14
2b26_A	173	The Crystal Structure Of The Protein Complex Of Yea		2e-14
2ctw_A	109	Solution Structure Of J-Domain From Mouse Dnaj Subf		3e-14
1c3g_A	170	S. Cerevisiae Heat Shock Protein 40 Sis1 Length = 1		3e-14
2cug_A	88	Solution Structure Of The J Domain Of The Pseudo Dn		5e-14
1nlt_A	248	The Crystal Structure Of Hsp40 Ydj1 Length = 248		7e-14
2ctr_A	88	Solution Structure Of J-Domain From Human Dnaj Subf		4e-13
2o37_A	92	J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S		1e-12
2dn9_A	79	Solution Structure Of J-Domain From The Dnaj Homolo		2e-12
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		2e-10
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		3e-10
3lz8_A	329	Structure Of A Putative Chaperone Dnaj From Klebsie		4e-09
2kqx_A	73	Nmr Structure Of The J-Domain (Residues 2-72) In Th		2e-08
2y4u_A	450	Crystal Structure Of Human P58(Ipk) In Space Group		4e-08
2y4t_A	450	Crystal Structure Of The Human Co-Chaperone P58(Ipk		5e-08
1wjz_A	94	Soluiotn Structure Of J-Domain Of Mouse Dnaj Like P		2e-07
2l6l_A	155	Solution Structure Of Human J-Protein Co-Chaperone,		7e-07
2yua_A	99	Solution Structure Of The Dnaj Domain From Human Wi		1e-05
2qsa_A	109	Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2		4e-04

>pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding Domain Complexed With A C-Terminal Peptide Of Hsp70 Length = 190

Iteration: 1
 Score =  121 bits (303), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 63/153 (41%), Positives = 95/153 (62%), Gaps = 1/153 (0%)
Query: 164 AEFKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKT-RTVEEILTVEIKPGWKKG 222
           A  K+ P V + L  SLEEIY G  KKM+IS    +  GK+ R  ++ILT+E+K GWK+G
Sbjct: 6   ARKKQDPPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEG 65
Query: 223 TKITFPEKGNQEPGIIAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEAXXXXXXXXXX 282
           TKITFP++G+Q    I AD++F++ +KPH +++RDG+D++    I+L EA          
Sbjct: 66  TKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPT 125
Query: 283 XXXRNLMIPLTDIVKPGTEIVVPNEGMPISKEP 315
              R + +   D+++PG    VP EG+P+ K P
Sbjct: 126 LDGRTIPVVFKDVIRPGMRRKVPGEGLPLPKTP 158

>pdb|2QLD|A Chain A, Human Hsp40 Hdj1 Length = 183

Iteration: 1
 Score =  120 bits (301), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/150 (41%), Positives = 94/150 (62%), Gaps = 1/150 (0%)
Query: 167 KKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKT-RTVEEILTVEIKPGWKKGTKI 225
           K+ P V + L  SLEEIY G  KKM+IS    +  GK+ R  ++ILT+E+K GWK+GTKI
Sbjct: 2   KQDPPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKI 61
Query: 226 TFPEKGNQEPGIIAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEAXXXXXXXXXXXXX 285
           TFP++G+Q    I AD++F++ +KPH +++RDG+D++    I+L EA             
Sbjct: 62  TFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDG 121
Query: 286 RNLMIPLTDIVKPGTEIVVPNEGMPISKEP 315
           R + +   D+++PG    VP EG+P+ K P
Sbjct: 122 RTIPVVFKDVIRPGMRRKVPGEGLPLPKTP 151

>pdb|3AGX|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding Domain Length = 181

Iteration: 1
 Score =  119 bits (297), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 61/147 (41%), Positives = 92/147 (62%), Gaps = 1/147 (0%)
Query: 170 PAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKT-RTVEEILTVEIKPGWKKGTKITFP 228
           P V + L  SLEEIY G  KKM+IS    +  GK+ R  ++ILT+E+K GWK+GTKITFP
Sbjct: 3   PPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFP 62
Query: 229 EKGNQEPGIIAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEAXXXXXXXXXXXXXRNL 288
           ++G+Q    I AD++F++ +KPH +++RDG+D++    I+L EA             R +
Sbjct: 63  KEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTI 122
Query: 289 MIPLTDIVKPGTEIVVPNEGMPISKEP 315
            +   D+++PG    VP EG+P+ K P
Sbjct: 123 PVVFKDVIRPGMRRKVPGEGLPLPKTP 149

>pdb|2Q2G|A Chain A, Crystal Structure Of Dimerization Domain Of Hsp40 From Cryptosporidium Parvum, Cgd2_1800 Length = 180

Iteration: 1
 Score =  103 bits (256), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/141 (41%), Positives = 80/141 (56%), Gaps = 2/141 (1%)
Query: 176 LPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQE- 234
           L  +LEE+Y G +KK++++R  +    K R  E I+ VEIKPGWK GTK+T+  +G+QE 
Sbjct: 10  LLVTLEELYLGKRKKIKVTRKRFIE-HKVRNEENIVEVEIKPGWKDGTKLTYSGEGDQES 68
Query: 235 PGIIAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEAXXXXXXXXXXXXXRNLMIPLTD 294
           PG    DL+ I+  K H  + RD   L+    I L+ A             RNL IP+ +
Sbjct: 69  PGTSPGDLVLIIQTKTHPRFTRDDCHLIXKVTIPLVRALTGFTCPVTTLDNRNLQIPIKE 128
Query: 295 IVKPGTEIVVPNEGMPISKEP 315
           IV P T  +VPNEG PI  +P
Sbjct: 129 IVNPKTRKIVPNEGXPIKNQP 149

>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/71 (63%), Positives = 56/71 (78%), Gaps = 1/71 (1%)
Query: 5  YYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKR 64
          YY IL V R+A+ DD+KKAY+R A+ WHPDKNP +K   AE KFK+++EAY+VLSD  KR
Sbjct: 4  YYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEF-AEKKFKEVAEAYEVLSDKHKR 62
Query: 65 QIYDLYGEEGL 75
          +IYD YG EGL
Sbjct: 63 EIYDRYGREGL 73

>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77

Iteration: 1
 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/75 (58%), Positives = 59/75 (78%), Gaps = 3/75 (4%)
Query: 2  GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDP 61
          G DYY  L + R A+++++K+AY+R A+ +HPDKN   K   AE KFK+I+EAYDVLSDP
Sbjct: 2  GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKN---KEPGAEEKFKEIAEAYDVLSDP 58
Query: 62 QKRQIYDLYGEEGLK 76
          +KR+I+D YGEEGLK
Sbjct: 59 RKREIFDRYGEEGLK 73

>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82

Iteration: 1
 Score = 88.6 bits (218), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 41/68 (60%), Positives = 54/68 (79%), Gaps = 1/68 (1%)
Query: 4  DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
          DYY +L V R A+ + +KKAY++LA+ WHPDKNP +K  EAE +FKQ++EAY+VLSD +K
Sbjct: 10 DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENK-EEAERRFKQVAEAYEVLSDAKK 68
Query: 64 RQIYDLYG 71
          R IYD YG
Sbjct: 69 RDIYDRYG 76

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/68 (61%), Positives = 52/68 (76%), Gaps = 2/68 (2%)
Query: 4  DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
          DYY IL V++ A E +++KAYKRLAM +HPD+N   K  EAEAKFK+I EAY+VL+D QK
Sbjct: 4  DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK--EAEAKFKEIKEAYEVLTDSQK 61
Query: 64 RQIYDLYG 71
          R  YD YG
Sbjct: 62 RAAYDQYG 69

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 42/68 (61%), Positives = 52/68 (76%), Gaps = 2/68 (2%)
Query: 4  DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
          DYY IL V++ A E +++KAYKRLAM +HPD+N   K  EAEAKFK+I EAY+VL+D QK
Sbjct: 4  DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK--EAEAKFKEIKEAYEVLTDSQK 61
Query: 64 RQIYDLYG 71
          R  YD YG
Sbjct: 62 RAAYDQYG 69

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 42/68 (61%), Positives = 52/68 (76%), Gaps = 2/68 (2%)
Query: 4  DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
          DYY IL V++ A E +++KAYKRLAM +HPD+N   K  EAEAKFK+I EAY+VL+D QK
Sbjct: 4  DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK--EAEAKFKEIKEAYEVLTDSQK 61
Query: 64 RQIYDLYG 71
          R  YD YG
Sbjct: 62 RAAYDQYG 69

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 53/68 (77%), Gaps = 1/68 (1%)
Query: 4  DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
          +YY +L V  +A+ +D+KKAY++LA+ WHPDKNP +K  EAE KFK +SEAY+VLSD +K
Sbjct: 10 NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKE-EAEKKFKLVSEAYEVLSDSKK 68
Query: 64 RQIYDLYG 71
          R +YD  G
Sbjct: 69 RSLYDRAG 76

>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78

Iteration: 1
 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/69 (56%), Positives = 51/69 (73%), Gaps = 3/69 (4%)
Query: 4  DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
          DYY IL V+R A+++DLKKAY+RLA+ +HPDKN +   TEA   FK I  AY VLS+P+K
Sbjct: 8  DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEA---FKAIGTAYAVLSNPEK 64
Query: 64 RQIYDLYGE 72
          R+ YD +G 
Sbjct: 65 RKQYDQFGS 73

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 77.4 bits (189), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 39/69 (56%), Positives = 55/69 (79%), Gaps = 5/69 (7%)
Query: 5  YYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKR 64
          YY++L V  NA +++LKKAY++LA+ +HPDKNP+    E E KFKQIS+AY+VLSD +KR
Sbjct: 8  YYDVLGVKPNATQEELKKAYRKLALKYHPDKNPN----EGE-KFKQISQAYEVLSDAKKR 62
Query: 65 QIYDLYGEE 73
          ++YD  GE+
Sbjct: 63 ELYDKGGEQ 71

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/69 (53%), Positives = 54/69 (78%), Gaps = 5/69 (7%)
Query: 5  YYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKR 64
          YY++L V  +A++++LKKAY+++A+ +HPDKNP     +   +FKQIS+AY+VLSD +KR
Sbjct: 10 YYDVLGVKPDASDNELKKAYRKMALKFHPDKNP-----DGAEQFKQISQAYEVLSDEKKR 64
Query: 65 QIYDLYGEE 73
          QIYD  GEE
Sbjct: 65 QIYDQGGEE 73

>pdb|2B26|A Chain A, The Crystal Structure Of The Protein Complex Of Yeast Hsp40 Sis1 And Hsp70 Ssa1 Length = 173

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 5/146 (3%)
Query: 171 AVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEK 230
            V+  LP SLE+++ G KK  +I R       +   ++    +++KPGWK GTKIT+  +
Sbjct: 2   TVQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQID----IQLKPGWKAGTKITYKNQ 57
Query: 231 GNQEPGI-IAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEAXXXXXXXXXXXXXRNLM 289
           G+  P       L F++ EK H  ++RDG+DL+    ++  E+             R L 
Sbjct: 58  GDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLP 117
Query: 290 IPLTDIVKPGTEIVVPNEGMPISKEP 315
           +     V+P      P +GMP  K P
Sbjct: 118 LSRVQPVQPSQTSTYPGQGMPTPKNP 143

>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 53/74 (71%), Gaps = 2/74 (2%)
Query: 2  GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDP 61
          G   Y++L +++NA  DD+KK+Y++LA+ +HPDKNP +   EA  KFK+I+ A+ +L+D 
Sbjct: 16 GESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDN--PEAADKFKEINNAHAILTDA 73
Query: 62 QKRQIYDLYGEEGL 75
           KR IYD YG  GL
Sbjct: 74 TKRNIYDKYGSLGL 87

>pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1 Length = 170

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 5/146 (3%)
Query: 171 AVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEK 230
            V+  LP SLE+++ G KK  +I R       +   ++    +++KPGWK GTKIT+  +
Sbjct: 2   TVQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQID----IQLKPGWKAGTKITYKNQ 57
Query: 231 GNQEPGI-IAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEAXXXXXXXXXXXXXRNLM 289
           G+  P       L F++ EK H  ++RDG+DL+    ++  E+             R L 
Sbjct: 58  GDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLP 117
Query: 290 IPLTDIVKPGTEIVVPNEGMPISKEP 315
           +     V+P      P +GMP  K P
Sbjct: 118 LSRVQPVQPSQTSTYPGQGMPTPKNP 143

>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88

Iteration: 1
 Score = 74.7 bits (182), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 38/71 (53%), Positives = 51/71 (71%), Gaps = 3/71 (4%)
Query: 1  MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSD 60
          + FD Y +L V+R A++ D+KKAYK+LA  WHPDKN   K   AE +F QIS+AY++LS+
Sbjct: 15 LDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKN---KDPGAEDRFIQISKAYEILSN 71
Query: 61 PQKRQIYDLYG 71
           +KR  YD YG
Sbjct: 72 EEKRTNYDHYG 82

>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1 Length = 248

Iteration: 1
 Score = 74.3 bits (181), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 2/113 (1%)
Query: 203 KTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPGIIAADLIFIVDEKPHALYRRDGNDLV 262
           K     +IL V ++PG K G +I F  + +Q P +I  D++FIV E+PH  ++RDG+DLV
Sbjct: 106 KVENERKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLV 165
Query: 263 VGQEITLLEAXXXXXXXXXXXXXRNLMIPLT--DIVKPGTEIVVPNEGMPISK 313
              EI LL A               L + +   +++ PG   V+  +GMPI K
Sbjct: 166 YEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPK 218

>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 50/71 (70%), Gaps = 3/71 (4%)
Query: 5  YYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKR 64
          YY+IL V ++A+E  +KKA+ +LAM +HPDKN   K  +AEAKF++I+EAY+ LSD  +R
Sbjct: 9  YYDILGVPKSASERQIKKAFHKLAMKYHPDKN---KSPDAEAKFREIAEAYETLSDANRR 65
Query: 65 QIYDLYGEEGL 75
          + YD  G    
Sbjct: 66 KEYDTLGHSAF 76

>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 51/71 (71%), Gaps = 5/71 (7%)
Query: 6  YNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQ 65
          Y++L V+ +ANE +LKK Y++ A+ +HPDK      T    KFK+ISEA+++L+DPQKR+
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDKP-----TGDTEKFKEISEAFEILNDPQKRE 65
Query: 66 IYDLYGEEGLK 76
          IYD YG E  +
Sbjct: 66 IYDQYGLEAAR 76

>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 48/68 (70%), Gaps = 2/68 (2%)
Query: 4  DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
          DYY IL V RNA++ ++KKAY +LA  +HPD N    +  A+ KF Q++EAY+VLSD  K
Sbjct: 8  DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPK--AKEKFSQLAEAYEVLSDEVK 65
Query: 64 RQIYDLYG 71
          R+ YD YG
Sbjct: 66 RKQYDAYG 73

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 52/73 (71%), Gaps = 2/73 (2%)
Query: 4  DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
          ++Y++L V++ A+  ++++A+K+LA+  HPDKNP++    A   F +I+ AY+VL D   
Sbjct: 22 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPN--AHGDFLKINRAYEVLKDEDL 79
Query: 64 RQIYDLYGEEGLK 76
          R+ YD YGE+GL+
Sbjct: 80 RKKYDKYGEKGLE 92

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 52/73 (71%), Gaps = 2/73 (2%)
Query: 4  DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
          ++Y++L V++ A+  ++++A+K+LA+  HPDKNP++    A   F +I+ AY+VL D   
Sbjct: 3  NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN--PNAHGDFLKINRAYEVLKDEDL 60
Query: 64 RQIYDLYGEEGLK 76
          R+ YD YGE+GL+
Sbjct: 61 RKKYDKYGEKGLE 73

>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 107/264 (40%), Gaps = 60/264 (22%)
Query: 4   DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
           DYY IL V    +   +K AY+RLA  +HPD +   K  +AEAKFK ++EA++VL D Q+
Sbjct: 29  DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVS---KENDAEAKFKDLAEAWEVLKDEQR 85
Query: 64  RQIYDLYGEEGLKXXXXXXXXXXXXXXRAGQHYYHQRQHPNPSFRFNPRDAEDIYEELFX 123
           R  YD   +                  R    +  QRQ    S  ++ +D +DI+  +F 
Sbjct: 86  RAEYDQLWQH-----------------RNDPGFGRQRQTHEQS--YSQQDFDDIFSSMFG 126
Query: 124 XXXXXXXXXXXXXXXXIRGYSHREGLFRNGNCSSTASGGAAEFKKAPAVENLLPCSLEEI 183
                            + +  R            A G   E + A  +E  L       
Sbjct: 127 Q----------------QAHQRRR--------QHAARGHDLEIEVAVFLEETL------- 155
Query: 184 YKGAKKKMRISRN--VYDSVGKTRT-VEEILTVEIKPGWKKGTKITFPEKGN-QEPGIIA 239
              A++   IS N  VY+  G   +   + L V+I  G   G +I    +G   E G   
Sbjct: 156 ---AEQTRTISYNLPVYNVFGMIESETPKTLNVKIPAGVVDGQRIRLKGQGTPGENGGPN 212
Query: 240 ADLIFIVDEKPHALYRRDGNDLVV 263
            DL  ++   PH L+   G++L +
Sbjct: 213 GDLWLVIHIAPHPLFDIVGHNLEI 236

>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 44/65 (67%), Gaps = 3/65 (4%)
Query: 4  DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
          DYY I+ V    +   +K AY+RLA  +HPD +   K  +AEA+FK+++EA++VLSD Q+
Sbjct: 6  DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVS---KEPDAEARFKEVAEAWEVLSDEQR 62
Query: 64 RQIYD 68
          R  YD
Sbjct: 63 RAEYD 67

>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 4   DYYNILKVNRNANEDDLKKAYKRLAMIWHPDK-NPSHKRTEAEAKFKQISEAYDVLSDPQ 62
           DYY IL V RNA + ++ KAY++LA+ WHPD      ++ +AE KF  I+ A +VLSDP+
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 63  KRQIYD 68
            R+ +D
Sbjct: 443 XRKKFD 448

>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 4   DYYNILKVNRNANEDDLKKAYKRLAMIWHPDK-NPSHKRTEAEAKFKQISEAYDVLSDPQ 62
           DYY IL V RNA + ++ KAY++LA+ WHPD      ++ +AE KF  I+ A +VLSDP+
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 63  KRQIYD 68
            R+ +D
Sbjct: 443 MRKKFD 448

>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein Length = 94

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query: 4  DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKN----PSHKRTEAEAKFKQISEAYDVLS 59
          D+Y+IL  + +AN  DLK+ Y++L +++HPDK     P+    E   KF +I +A+ +L 
Sbjct: 17 DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76
Query: 60 DPQKRQIYDL 69
          + + ++ YDL
Sbjct: 77 NEETKKKYDL 86

>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4 Length = 155

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query: 4  DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKN----PSHKRTEAEAKFKQISEAYDVLS 59
          D+Y+IL  + +AN  DLK+ Y++L +++HPDK     P+    E   KF +I +A+ +L 
Sbjct: 11 DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70
Query: 60 DPQKRQIYDL 69
          + + ++ YDL
Sbjct: 71 NEETKREYDL 80

>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams- Beuren Syndrome Chromosome Region 18 Protein Length = 99

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 6  YNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQ 65
          Y++L V   A +  +K AY R   ++HPD+N      EA  +F +IS+AY VL     R+
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSG--SAEAAERFTRISQAYVVLGSATLRR 77
Query: 66 IYD--LYGEEGLK 76
           YD  L  +E L+
Sbjct: 78 KYDRGLLSDEDLR 90

>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2 Precursor From C.Elegans Length = 109

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 6  YNILKVNRNA-NEDDLKKAYKRLAMIWHPD--KNPSHKRTEAEAKFKQISEAYDVLSDPQ 62
          Y++L+VNR   ++  L KAY+ LA   HPD  KN   K   AE +F+ I+ AY+ L D +
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLL-AEERFRVIATAYETLKDDE 76
Query: 63 KRQIYDLY 70
           +  YD Y
Sbjct: 77 AKTNYDYY 84

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	315
2q2g_A	180	HSP40 protein, heat shock 40 kDa protein, putative	5e-75
3agx_A	181	DNAJ homolog subfamily B member 1; chaperone; 1.85	9e-74
1c3g_A	170	Heat shock protein 40; beta sheets, short helices,	3e-70
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	1e-57
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	4e-44
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	5e-42
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	3e-41
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	4e-40
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	3e-38
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	3e-38
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	2e-35
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	3e-35
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	2e-34
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	5e-34
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	6e-34
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	9e-34
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	2e-33
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	2e-33
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	4e-33
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	8e-33
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	8e-33
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	2e-32
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	2e-32
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	2e-32
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	2e-28
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	1e-26
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	3e-26
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	1e-23
1xao_A	121	YDJ1, mitochondrial protein import protein MAS5; b	7e-23
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-22
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	5e-18
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	5e-18
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	2e-16
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	4e-16
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	2e-15
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	4e-15
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	4e-11
2guz_A	71	Mitochondrial import inner membrane translocase su	1e-10
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	9e-10
3i38_A	109	Putative chaperone DNAJ; structural genomics, prot	7e-06

>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II} Length = 180

 Score =  227 bits (580), Expect = 5e-75
 Identities = 68/149 (45%), Positives = 93/149 (62%), Gaps = 2/149 (1%)

Query: 168 KAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITF 227
              + E  L  +LEE+Y G +KK++++R  +    K R  E I+ VEIKPGWK GTK+T+
Sbjct: 2   APRSHEVPLLVTLEELYLGKRKKIKVTRKRFIE-HKVRNEENIVEVEIKPGWKDGTKLTY 60

Query: 228 PEKGNQE-PGIIAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGR 286
             +G+QE PG    DL+ I+  K H  + RD   L++   I L+ ALTG T  +TTLD R
Sbjct: 61  SGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIMKVTIPLVRALTGFTCPVTTLDNR 120

Query: 287 NLMIPLTDIVKPGTEIVVPNEGMPISKEP 315
           NL IP+ +IV P T  +VPNEGMPI  +P
Sbjct: 121 NLQIPIKEIVNPKTRKIVPNEGMPIKNQP 149

>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A Length = 181

 Score =  224 bits (572), Expect = 9e-74
 Identities = 68/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%)

Query: 170 PAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEE-ILTVEIKPGWKKGTKITFP 228
           P V + L  SLEEIY G  KKM+IS    +  GK+   E+ ILT+E+K GWK+GTKITFP
Sbjct: 3   PPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFP 62

Query: 229 EKGNQEPGIIAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNL 288
           ++G+Q    I AD++F++ +KPH +++RDG+D++    I+L EAL G T+++ TLDGR +
Sbjct: 63  KEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTI 122

Query: 289 MIPLTDIVKPGTEIVVPNEGMPISKEP 315
            +   D+++PG    VP EG+P+ K P
Sbjct: 123 PVVFKDVIRPGMRRKVPGEGLPLPKTP 149

>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A Length = 170

 Score =  214 bits (547), Expect = 3e-70
 Identities = 49/145 (33%), Positives = 78/145 (53%), Gaps = 5/145 (3%)

Query: 172 VENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKG 231
           V+  LP SLE+++ G KK  +I R       +    +  + +++KPGWK GTKIT+  +G
Sbjct: 3   VQVNLPVSLEDLFVGKKKSFKIGRKGPHGASE----KTQIDIQLKPGWKAGTKITYKNQG 58

Query: 232 NQEPGI-IAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLMI 290
           +  P       L F++ EK H  ++RDG+DL+    ++  E+L G +  + T+DGR L +
Sbjct: 59  DYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPL 118

Query: 291 PLTDIVKPGTEIVVPNEGMPISKEP 315
                V+P      P +GMP  K P
Sbjct: 119 SRVQPVQPSQTSTYPGQGMPTPKNP 143

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score =  187 bits (478), Expect = 1e-57
 Identities = 74/321 (23%), Positives = 118/321 (36%), Gaps = 64/321 (19%)

Query: 1   MGF-DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLS 59
           M   DYY IL V    +   +K AY+RLA  +HPD +      +AEAKFK ++EA++VL 
Sbjct: 25  MELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE---NDAEAKFKDLAEAWEVLK 81

Query: 60  DPQKRQIYDLYGEEGLKSGTVPTSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYE 119
           D Q+R  YD                      +        RQ       ++ +D +DI+ 
Sbjct: 82  DEQRRAEYDQLW-------------------QHRNDPGFGRQRQTHEQSYSQQDFDDIFS 122

Query: 120 ELFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTASGGAAEFKKAPAVENLLPCS 179
            +FG         QR   H  RG+                                +   
Sbjct: 123 SMFGQ-----QAHQRRRQHAARGHDLEIE---------------------------VAVF 150

Query: 180 LEEIYKGAKKKMRISRNVYDSVGKTRTVE-EILTVEIKPGWKKGTKITFPEKGNQEPGI- 237
           LEE      + +  +  VY+  G   +   + L V+I  G   G +I    +G   PG  
Sbjct: 151 LEETLAEQTRTISYNLPVYNVFGMIESETPKTLNVKIPAGVVDGQRIRLKGQG--TPGEN 208

Query: 238 --IAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGR-NLMIPLTD 294
                DL  ++   PH L+   G++L +   +   EA  G  + + TL     L +P   
Sbjct: 209 GGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPG- 267

Query: 295 IVKPGTEIVVPNEGMPISKEP 315
             + G  + +  +G+      
Sbjct: 268 -SQAGQRLRIKGKGLVSKTHT 287

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score =  145 bits (368), Expect = 4e-44
 Identities = 48/96 (50%), Positives = 62/96 (64%), Gaps = 1/96 (1%)

Query: 4  DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
           YY IL V R+A+ DD+KKAY+R A+ WHPDKNP +K   AE KFK+++EAY+VLSD  K
Sbjct: 3  SYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKE-FAEKKFKEVAEAYEVLSDKHK 61

Query: 64 RQIYDLYGEEGLKSGTVPTSSTSTSASRAGQHYYHQ 99
          R+IYD YG EGL       S     +   G  ++H 
Sbjct: 62 REIYDRYGREGLTGTGTGPSRAEAGSGGPGLEHHHH 97

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score =  139 bits (352), Expect = 5e-42
 Identities = 44/78 (56%), Positives = 59/78 (75%), Gaps = 3/78 (3%)

Query: 1  MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSD 60
          MG DYY  L + R A+++++K+AY+R A+ +HPDKN       AE KFK+I+EAYDVLSD
Sbjct: 1  MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE---PGAEEKFKEIAEAYDVLSD 57

Query: 61 PQKRQIYDLYGEEGLKSG 78
          P+KR+I+D YGEEGLK  
Sbjct: 58 PRKREIFDRYGEEGLKGS 75

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score =  137 bits (348), Expect = 3e-41
 Identities = 41/83 (49%), Positives = 60/83 (72%), Gaps = 1/83 (1%)

Query: 4  DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
          +YY +L V  +A+ +D+KKAY++LA+ WHPDKNP +K  EAE KFK +SEAY+VLSD +K
Sbjct: 10 NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNK-EEAEKKFKLVSEAYEVLSDSKK 68

Query: 64 RQIYDLYGEEGLKSGTVPTSSTS 86
          R +YD  G +  ++G   +  +S
Sbjct: 69 RSLYDRAGCDSWRAGGGASGPSS 91

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score =  134 bits (339), Expect = 4e-40
 Identities = 41/73 (56%), Positives = 54/73 (73%), Gaps = 1/73 (1%)

Query: 4  DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
          DYY +L V R A+ + +KKAY++LA+ WHPDKNP +K  EAE +FKQ++EAY+VLSD +K
Sbjct: 10 DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENK-EEAERRFKQVAEAYEVLSDAKK 68

Query: 64 RQIYDLYGEEGLK 76
          R IYD YG     
Sbjct: 69 RDIYDRYGSGPSS 81

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score =  130 bits (329), Expect = 3e-38
 Identities = 36/78 (46%), Positives = 53/78 (67%), Gaps = 2/78 (2%)

Query: 1  MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSD 60
           G   Y++L +++NA  DD+KK+Y++LA+ +HPDKNP +   EA  KFK+I+ A+ +L+D
Sbjct: 15 SGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNP--EAADKFKEINNAHAILTD 72

Query: 61 PQKRQIYDLYGEEGLKSG 78
            KR IYD YG  GL   
Sbjct: 73 ATKRNIYDKYGSLGLYVA 90

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score =  133 bits (337), Expect = 3e-38
 Identities = 36/141 (25%), Positives = 67/141 (47%), Gaps = 20/141 (14%)

Query: 4   DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
           ++Y++L V++ A+  ++++A+K+LA+  HPDKNP++    A   F +I+ AY+VL D   
Sbjct: 3   NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNP--NAHGDFLKINRAYEVLKDEDL 60

Query: 64  RQIYDLYGEEGLKSGTVPTSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEELFG 123
           R+ YD YGE+GL+                       +      +R++    +D  E +  
Sbjct: 61  RKKYDKYGEKGLEDN------------------QGGQYESWSYYRYDFGIYDDDPEIITL 102

Query: 124 SESNNNSGGQRGNNHNIRGYS 144
                ++    G    +  YS
Sbjct: 103 ERREFDAAVNSGELWFVNFYS 123

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score =  121 bits (306), Expect = 2e-35
 Identities = 37/70 (52%), Positives = 54/70 (77%), Gaps = 5/70 (7%)

Query: 4  DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
           YY++L V  +A++++LKKAY+++A+ +HPDKNP     +   +FKQIS+AY+VLSD +K
Sbjct: 9  GYYDVLGVKPDASDNELKKAYRKMALKFHPDKNP-----DGAEQFKQISQAYEVLSDEKK 63

Query: 64 RQIYDLYGEE 73
          RQIYD  GEE
Sbjct: 64 RQIYDQGGEE 73

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score =  122 bits (308), Expect = 3e-35
 Identities = 36/87 (41%), Positives = 53/87 (60%), Gaps = 5/87 (5%)

Query: 4  DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
            Y++L V+ +ANE +LKK Y++ A+ +HPDK           KFK+ISEA+++L+DPQK
Sbjct: 9  KLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTG-----DTEKFKEISEAFEILNDPQK 63

Query: 64 RQIYDLYGEEGLKSGTVPTSSTSTSAS 90
          R+IYD YG E  +SG           +
Sbjct: 64 REIYDQYGLEAARSGGPSFGPGGPGGA 90

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Length = 248

 Score =  124 bits (314), Expect = 2e-34
 Identities = 46/117 (39%), Positives = 65/117 (55%), Gaps = 3/117 (2%)

Query: 202 GKTRTVEE-ILTVEIKPGWKKGTKITFPEKGNQEPGIIAADLIFIVDEKPHALYRRDGND 260
           GK    E  IL V ++PG K G +I F  + +Q P +I  D++FIV E+PH  ++RDG+D
Sbjct: 104 GKKVENERKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDD 163

Query: 261 LVVGQEITLLEALTGKTLDLTTLDGRNLM--IPLTDIVKPGTEIVVPNEGMPISKEP 315
           LV   EI LL A+ G    L  + G  L   I   +++ PG   V+  +GMPI K  
Sbjct: 164 LVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYG 220

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score =  119 bits (300), Expect = 5e-34
 Identities = 43/75 (57%), Positives = 54/75 (72%), Gaps = 2/75 (2%)

Query: 4  DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
          DYY IL V++ A E +++KAYKRLAM +HPD+N   K  EAEAKFK+I EAY+VL+D QK
Sbjct: 4  DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK--EAEAKFKEIKEAYEVLTDSQK 61

Query: 64 RQIYDLYGEEGLKSG 78
          R  YD YG    + G
Sbjct: 62 RAAYDQYGHAAFEQG 76

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score =  118 bits (298), Expect = 6e-34
 Identities = 37/76 (48%), Positives = 50/76 (65%), Gaps = 3/76 (3%)

Query: 1  MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSD 60
          + FD Y +L V+R A++ D+KKAYK+LA  WHPDKN       AE +F QIS+AY++LS+
Sbjct: 15 LDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD---PGAEDRFIQISKAYEILSN 71

Query: 61 PQKRQIYDLYGEEGLK 76
           +KR  YD YG     
Sbjct: 72 EEKRTNYDHYGSGPSS 87

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score =  120 bits (302), Expect = 9e-34
 Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 7/121 (5%)

Query: 4   DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRT----EAEAKFKQISEAYDVLS 59
           D+Y+IL  + +AN  DLK+ Y++L +++HPDK  +        E   KF +I +A+ +L 
Sbjct: 11  DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70

Query: 60  DPQKRQIYDLYGEEGLKSGTVPTSSTSTSASRAGQHYYHQRQHPNP---SFRFNPRDAED 116
           + + ++ YDL   E       P  +       +     H           +  +  +AE+
Sbjct: 71  NEETKREYDLQRCEDDLRNVGPVDAQVYLEEMSWNEGDHSFYLSCRCGGKYSVSKDEAEE 130

Query: 117 I 117
           +
Sbjct: 131 V 131

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score =  116 bits (294), Expect = 2e-33
 Identities = 37/73 (50%), Positives = 49/73 (67%), Gaps = 3/73 (4%)

Query: 4  DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
          DYY IL V+R A+++DLKKAY+RLA+ +HPDKN +     A   FK I  AY VLS+P+K
Sbjct: 8  DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHA---PGATEAFKAIGTAYAVLSNPEK 64

Query: 64 RQIYDLYGEEGLK 76
          R+ YD +G     
Sbjct: 65 RKQYDQFGSGPSS 77

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score =  117 bits (296), Expect = 2e-33
 Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 4  DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
          DYY +L  +  ++ + +   +K  A+  HPDK+P +   +A   F+++ +A ++L++ + 
Sbjct: 21 DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENP--KAVETFQKLQKAKEILTNEES 78

Query: 64 RQIYDLYGEEGLKSG 78
          R  YD +    +   
Sbjct: 79 RARYDHWRRSQMSMP 93

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score =  116 bits (292), Expect = 4e-33
 Identities = 37/75 (49%), Positives = 52/75 (69%), Gaps = 3/75 (4%)

Query: 4  DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
           YY+IL V ++A+E  +KKA+ +LAM +HPDKN S    +AEAKF++I+EAY+ LSD  +
Sbjct: 8  SYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS---PDAEAKFREIAEAYETLSDANR 64

Query: 64 RQIYDLYGEEGLKSG 78
          R+ YD  G     SG
Sbjct: 65 RKEYDTLGHSAFTSG 79

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score =  115 bits (290), Expect = 8e-33
 Identities = 36/71 (50%), Positives = 48/71 (67%), Gaps = 2/71 (2%)

Query: 4  DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
          DYY IL V RNA++ ++KKAY +LA  +HPD N      +A+ KF Q++EAY+VLSD  K
Sbjct: 8  DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDP--KAKEKFSQLAEAYEVLSDEVK 65

Query: 64 RQIYDLYGEEG 74
          R+ YD YG   
Sbjct: 66 RKQYDAYGSGP 76

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score =  115 bits (291), Expect = 8e-33
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 4  DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
            Y++L V   A +  +K AY R   ++HPD+N      EA  +F +IS+AY VL     
Sbjct: 18 ALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSA--EAAERFTRISQAYVVLGSATL 75

Query: 64 RQIYDLYGEEG 74
          R+ YD      
Sbjct: 76 RRKYDRGLLSD 86

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score =  115 bits (290), Expect = 2e-32
 Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 14/103 (13%)

Query: 4   DYYNILKVNRNA-NEDDLKKAYKRLAMIWHPDKNPSHK-RTEAEAKFKQISEAYDVLSDP 61
           + Y++L+VNR   ++  L KAY+ LA   HPD+  + + +  AE +F+ I+ AY+ L D 
Sbjct: 16  NCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDD 75

Query: 62  QKRQIYDLYGEEGLKSGTVPTSSTSTSASRAGQHYYHQRQHPN 104
           + +  YD Y +   +                   YY  R  P 
Sbjct: 76  EAKTNYDYYLDHPDQRF------------YNYYQYYRLRAAPK 106

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score =  114 bits (288), Expect = 2e-32
 Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 4/75 (5%)

Query: 4  DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNP----SHKRTEAEAKFKQISEAYDVLS 59
          D+Y+IL  + +AN  DLK+ Y++L +++HPDK      +    E   KF +I +A+ +L 
Sbjct: 17 DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76

Query: 60 DPQKRQIYDLYGEEG 74
          + + ++ YDL     
Sbjct: 77 NEETKKKYDLQRSGP 91

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score =  114 bits (287), Expect = 2e-32
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 4/75 (5%)

Query: 4  DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
          +  ++++      E + KK  +RL + WHPDKNP +    A   FK +    + L   +K
Sbjct: 17 EVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHD-IANEVFKHLQNEINRL---EK 72

Query: 64 RQIYDLYGEEGLKSG 78
          +   D   +   +  
Sbjct: 73 QAFLDQNADRASRRT 87

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score =  107 bits (268), Expect = 2e-28
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 8/78 (10%)

Query: 4  DYYNILKVNRNA--NEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDP 61
             ++L + R+A  N   ++KAY +    +HPDK         E K K+++  Y  + D 
Sbjct: 12 QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD------EEKMKKMNTLYKKMEDG 65

Query: 62 QKRQIYDLYGEEGLKSGT 79
           K      +G     +  
Sbjct: 66 VKYAHQPDFGGFWDATEV 83

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score =  100 bits (250), Expect = 1e-26
 Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 8/77 (10%)

Query: 4  DYYNILKVNRNA--NEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDP 61
             ++L + R+A  N   ++KAY +    +HPDK         E K K+++  Y  + D 
Sbjct: 9  QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD------EEKMKKMNTLYKKMEDG 62

Query: 62 QKRQIYDLYGEEGLKSG 78
           K      +G     + 
Sbjct: 63 VKYAHQPDFGGFWDATE 79

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 98.3 bits (245), Expect = 3e-26
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 4  DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
          D +++L V   A+ D++ KAY++LA++ HPDK  +     +E  FK +  A   L    K
Sbjct: 28 DSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVA---PGSEDAFKAVVNARTALLKNIK 84

Query: 64 RQIYD 68
               
Sbjct: 85 SGPSS 89

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score =  100 bits (249), Expect = 1e-23
 Identities = 34/146 (23%), Positives = 65/146 (44%), Gaps = 20/146 (13%)

Query: 4   DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
           ++Y++L V++ A+  ++++A+K+LA+  HPDKNP++    A   F +I+ AY+VL D   
Sbjct: 22  NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNP--NAHGDFLKINRAYEVLKDEDL 79

Query: 64  RQIYDLYGEEGLKSGTVPTSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEELFG 123
           R+ YD YGE                  +  +     +      +R++    +D  E +  
Sbjct: 80  RKKYDKYGE------------------KGLEDNQGGQYESWSYYRYDFGIYDDDPEIITL 121

Query: 124 SESNNNSGGQRGNNHNIRGYSHREGL 149
                ++    G    +  YS     
Sbjct: 122 ERREFDAAVNSGELWFVNFYSPGSSH 147

>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae} Length = 121

 Score = 90.8 bits (226), Expect = 7e-23
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 2/64 (3%)

Query: 254 YRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLT--DIVKPGTEIVVPNEGMPI 311
           ++RDG+DLV   EI LL A+ G    L  + G  L + +   +++ PG   V+  +GMPI
Sbjct: 2   FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI 61

Query: 312 SKEP 315
            K  
Sbjct: 62  PKYG 65

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 96.7 bits (241), Expect = 1e-22
 Identities = 31/66 (46%), Positives = 46/66 (69%), Gaps = 1/66 (1%)

Query: 4   DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSH-KRTEAEAKFKQISEAYDVLSDPQ 62
           DYY IL V RNA + ++ KAY++LA+ WHPD   +  ++ +AE KF  I+ A +VLSDP+
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442

Query: 63  KRQIYD 68
            R+ +D
Sbjct: 443 MRKKFD 448

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 79.2 bits (195), Expect = 5e-18
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 5/72 (6%)

Query: 4  DYYNILKVNRNANED--DLKKAYKRLAMIWHPDKNPSHKRTE---AEAKFKQISEAYDVL 58
          DY+ +  +      D   L   ++ L   +HPDK  S  + E   A  +   I++A+  L
Sbjct: 2  DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61

Query: 59 SDPQKRQIYDLY 70
            P  R  Y L 
Sbjct: 62 RHPLMRAEYLLS 73

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 75.0 bits (184), Expect = 2e-16
 Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 12/79 (15%)

Query: 4  DYYNILKVNR-------NANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYD 56
           +Y +              ++  L+K Y++L    HPD            +   +++AY 
Sbjct: 12 TFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ-----GSEQSSTLNQAYH 66

Query: 57 VLSDPQKRQIYDLYGEEGL 75
           L DP +R  Y L     +
Sbjct: 67 TLKDPLRRSQYMLKLLRNI 85

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 74.1 bits (181), Expect = 4e-16
 Identities = 12/67 (17%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 2   GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSH-KRTEAEAKFKQISEAYDVLSD 60
           G   +  + +      + +KK Y++  ++ HPDK         A+  F ++++A+    +
Sbjct: 116 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFEN 175

Query: 61  PQKRQIY 67
             ++ +Y
Sbjct: 176 QGQKPLY 182

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 69.2 bits (169), Expect = 2e-15
 Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 8/70 (11%)

Query: 4  DYYNILKVNRNA--NEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDP 61
              +LK+ R    +   +++AYK+ +++ HPDK  S       A  ++++  +      
Sbjct: 12 RLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS------HALMQELNSLWGTFKTE 65

Query: 62 QKRQIYDLYG 71
                +L G
Sbjct: 66 VYNLRMNLGG 75

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207

 Score = 72.1 bits (176), Expect = 4e-15
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 5/71 (7%)

Query: 4   DYYNILKVNR--NANEDDLKKAYKRLAMIWHPDKNPSHKRTE---AEAKFKQISEAYDVL 58
           DY++++  NR    +   L+  Y++L  + HPD      +TE   +E     +++AY  L
Sbjct: 44  DYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTL 103

Query: 59  SDPQKRQIYDL 69
             P  R +Y L
Sbjct: 104 LAPLSRGLYLL 114

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92

 Score = 57.7 bits (139), Expect = 4e-11
 Identities = 10/60 (16%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 2  GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSH-KRTEAEAKFKQISEAYDVLSD 60
          G   +  + +      + +KK Y++  ++ HP K         A+  F ++++A+    +
Sbjct: 32 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 55.8 bits (135), Expect = 1e-10
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 7/63 (11%)

Query: 4  DYYNILKVNRNA-NEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQ 62
          +   IL +  N   +  LK+ ++++ +  HPDK  S           +I+EA D L    
Sbjct: 15 EALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS------PFLATKINEAKDFLEKRG 68

Query: 63 KRQ 65
            +
Sbjct: 69 ISK 71

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106

 Score = 54.2 bits (130), Expect = 9e-10
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 5/59 (8%)

Query: 6   YNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSH-----KRTEAEAKFKQISEAYDVLS 59
           +  + +      + ++K+Y+R  +I HPDK         ++  AE  F+ + EA+D  +
Sbjct: 43  WKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFN 101

>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp} Length = 109

 Score = 43.3 bits (103), Expect = 7e-06
 Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 7/52 (13%)

Query: 250 PHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGR-NLMIPLTDIVKPGT 300
            H L+   G++L +   +   EA  G  + + TL     L +P      PG+
Sbjct: 3   AHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVP------PGS 48

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	315
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	100.0
2q2g_A	180	HSP40 protein, heat shock 40 kDa protein, putative	100.0
3agx_A	181	DNAJ homolog subfamily B member 1; chaperone; 1.85	100.0
1c3g_A	170	Heat shock protein 40; beta sheets, short helices,	100.0
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	100.0
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.9
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.89
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.86
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.86
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.86
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.85
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.85
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.85
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.85
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.85
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.84
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.83
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.83
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.83
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.8
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.79
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.77
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.76
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.75
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.73
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.73
3i38_A	109	Putative chaperone DNAJ; structural genomics, prot	99.73
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.71
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.71
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.69
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.69
1xao_A	121	YDJ1, mitochondrial protein import protein MAS5; b	99.68
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.67
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.67
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.65
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.64
2guz_A	71	Mitochondrial import inner membrane translocase su	99.63
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.6
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.59
3i38_A	109	Putative chaperone DNAJ; structural genomics, prot	99.33
1xao_A	121	YDJ1, mitochondrial protein import protein MAS5; b	99.26
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.02
3agx_A	181	DNAJ homolog subfamily B member 1; chaperone; 1.85	98.99
1c3g_A	170	Heat shock protein 40; beta sheets, short helices,	98.98
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	98.97
2q2g_A	180	HSP40 protein, heat shock 40 kDa protein, putative	98.97
2guz_B	65	Mitochondrial import inner membrane translocase su	98.95
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	98.83
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	91.5

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=100.00  E-value=6.8e-61  Score=445.85  Aligned_cols=255  Identities=26%  Similarity=0.442  Sum_probs=135.2

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCCCCCCC
Q 038604            3 FDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKSGTVPT   82 (315)
Q Consensus         3 ~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~   82 (315)
                      .|||+||||+++|+.+|||+|||+||++||||++++   +++.++|++|++||++|+||.+|+.||+|+......+    
T Consensus        28 ~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~---~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~~~----  100 (329)
T 3lz8_A           28 KDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE---NDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQHRNDPG----  100 (329)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCC---hHHHHHHHHHHHHHHHhhhhhhhcccchhhccccCCC----
Confidence            699999999999999999999999999999999976   5788999999999999999999999999855421111    


Q ss_pred             CCCCCCCCCCCCccccCCCCCCCCCCCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCC
Q 038604           83 SSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEELFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTASGG  162 (315)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~  162 (315)
                       +.+      ++..+.      .+  |...++.|+|++|||+.      +.+    +                      +
T Consensus       101 -~~~------~~~~~~------~~--f~~~~f~diF~~~Fg~~------g~~----~----------------------~  133 (329)
T 3lz8_A          101 -FGR------QRQTHE------QS--YSQQDFDDIFSSMFGQQ------AHQ----R----------------------R  133 (329)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -ccc------cccccc------CC--cCCCchhhhhHhhhcCc------CCC----C----------------------C
Confidence             000      000000      01  11125679999999841      000    0                      0


Q ss_pred             CcccccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeE-EEEEEEEeCCCCCCCCEEEecCCCCCC-CCCCCC
Q 038604          163 AAEFKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTV-EEILTVEIKPGWKKGTKITFPEKGNQE-PGIIAA  240 (315)
Q Consensus       163 ~~~~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~-~~~~~V~Ip~G~~~G~~i~~~g~G~~~-~g~~~G  240 (315)
                      ....+++.|+.+.|.|||+|+|.|+++.|.+.+.+|++.|+++.+ .++++|+|||||++|++|+|+|+|++. .++.+|
T Consensus       134 ~~~~~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~g~G~v~~~~~~~l~V~IP~Gv~~G~~Irl~G~G~~g~~gg~~G  213 (329)
T 3lz8_A          134 RQHAARGHDLEIEVAVFLEETLAEQTRTISYNLPVYNVFGMIESETPKTLNVKIPAGVVDGQRIRLKGQGTPGENGGPNG  213 (329)
T ss_dssp             ---CCCCCCEEEEECCCTTGGGSCEEEEEEEEEEECCSCC-CCEEEEEEEEEEECTTCCTTCEEEESSCSCCC---CCCC
T ss_pred             CCCcCCCCCEEEEEecchhhhhhccceEEEEEEEeecCCeEEEEecceEEEEeCCCCCCCCCEEEEcccccCCCCCCCCC
Confidence            011357889999999999999999999999999999998865443 678999999999999999999999996 467899


Q ss_pred             cEEEEEEecCCCCeeecCCCeEEEEeeCHHHHHcCCeEEEecCCCcEEEEecCCCcCCCcEEEEcCCCcCCC
Q 038604          241 DLIFIVDEKPHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPIS  312 (315)
Q Consensus       241 DL~v~i~v~~h~~f~R~g~dL~~~~~Isl~eal~G~~~~i~tldG~~~~i~i~~~~~~g~~~~i~g~G~P~~  312 (315)
                      ||||+|+|++|+.|+|+|+||+++++|+|+|||||++++|+||||+ +.|+||+++++|+++||+|+|||..
T Consensus       214 DL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~VptLdG~-v~l~ip~gt~~g~~~rl~G~GmP~~  284 (329)
T 3lz8_A          214 DLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKES-ILLTVPPGSQAGQRLRIKGKGLVSK  284 (329)
T ss_dssp             CEEEEECCCCCSSCEEETTEEEEEEEECHHHHHHCEEEEECCSSSC-EEEEECTTCCTTCEEEETTCSCBCS
T ss_pred             cEEEEEEEecCCccEEcCCcEEEEEECCHHHHcCCCeEEEECCCCC-EEEEECCCCCCCCEEEEcCCCCCCC
Confidence            9999999999999999999999999999999999999999999998 7999999999999999999999964

>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=1.1e-38  Score=273.13  Aligned_cols=145  Identities=45%  Similarity=0.765  Sum_probs=137.6

Q ss_pred             CCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCC-CCCCCCCcEEEEEE
Q 038604          169 APAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQ-EPGIIAADLIFIVD  247 (315)
Q Consensus       169 ~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~-~~g~~~GDL~v~i~  247 (315)
                      +.|+.+.|.|||+|+|+|+++++.+.+.+.|++| ++.+.++++|.||+||++|++|+|+|+|++ .+++.+|||||+|+
T Consensus         3 g~d~~~~l~islee~~~G~~k~i~~~~~~~c~~g-~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g~~gg~~GDl~v~i~   81 (180)
T 2q2g_A            3 PRSHEVPLLVTLEELYLGKRKKIKVTRKRFIEHK-VRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQ   81 (180)
T ss_dssp             -CEEEEEEEECHHHHHHCEEEEEEEEEEEEETTE-EEEEEEEEEEEECTTCCTTCEEEETTCSCCSSTTSCCCEEEEEEE
T ss_pred             CCCEEEEEEeeHHHhcCCcEEEEEEeEEEecCCc-eEEeeEEEEEEECCCCcCCcEEEEeeccCCCCCCCccccEEEEEE
Confidence            6799999999999999999999999999888776 778899999999999999999999999999 68899999999999


Q ss_pred             ecCCCCeeecCCCeEEEEeeCHHHHHcCCeEEEecCCCcEEEEecCCCcCCCcEEEEcCCCcCCCCC
Q 038604          248 EKPHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPISKE  314 (315)
Q Consensus       248 v~~h~~f~R~g~dL~~~~~Isl~eal~G~~~~i~tldG~~~~i~i~~~~~~g~~~~i~g~G~P~~~~  314 (315)
                      +++|+.|+|+|+||+++++|||+||+||+++.|+||||+.+.|++|+++++|++++|+|+|||..+.
T Consensus        82 ~~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~v~i~ip~~t~~g~~~rl~g~Gmp~~~~  148 (180)
T 2q2g_A           82 TKTHPRFTRDDCHLIMKVTIPLVRALTGFTCPVTTLDNRNLQIPIKEIVNPKTRKIVPNEGMPIKNQ  148 (180)
T ss_dssp             ECCCSSCEEETTEEEEEEEEEHHHHHHCEEEEEECTTCCEEEEEECSCCCTTCEEEETTCSCBCSSS
T ss_pred             EEecccEEEcCCEEEEEEEcCHHHHhCCCEEEeeCCCCCEEEEECCCccCCCEEEEECCcCCCcCCC
Confidence            9999999999999999999999999999999999999988999999999999999999999997643

>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A

Probab=100.00  E-value=1e-38  Score=273.34  Aligned_cols=144  Identities=46%  Similarity=0.843  Sum_probs=132.0

Q ss_pred             CCceEEEEeeehhhHhcCceeEEEEeeeE--EcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCCCCCCCcEEEEE
Q 038604          169 APAVENLLPCSLEEIYKGAKKKMRISRNV--YDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPGIIAADLIFIV  246 (315)
Q Consensus       169 ~~di~~~l~vsl~e~~~G~~k~i~~~r~~--~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~g~~~GDL~v~i  246 (315)
                      ++|+.+.|.|||+|+|+|+++++.+.+.+  |+|.| ++.+.++++|+||+||++|++|+|+|+|++.+++.+|||||+|
T Consensus         2 ~~d~~~~l~islee~~~G~~k~i~i~~~c~~c~G~g-~~~~~~~l~V~Ip~G~~~G~~ir~~G~G~~~~~g~~GDl~v~i   80 (181)
T 3agx_A            2 DPPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKS-IRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFVL   80 (181)
T ss_dssp             ----CEEEEECHHHHHHCEEEEEEEEEEEECTTSSC-EEEEEEEEEEEECTTCCTTCEEEETTCSCCCSSSCCCCEEEEE
T ss_pred             CCCEEEEEEEEHHHhcCCcEEEEEEecccCCCCCce-EEEEeEEEEEEECCCccCCcEEEEeeccccCCCCCcccEEEEE
Confidence            35889999999999999999999998654  44555 7788999999999999999999999999998888999999999


Q ss_pred             EecCCCCeeecCCCeEEEEeeCHHHHHcCCeEEEecCCCcEEEEecCCCcCCCcEEEEcCCCcCCCC
Q 038604          247 DEKPHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPISK  313 (315)
Q Consensus       247 ~v~~h~~f~R~g~dL~~~~~Isl~eal~G~~~~i~tldG~~~~i~i~~~~~~g~~~~i~g~G~P~~~  313 (315)
                      ++++|+.|+|+|+||+++++|||+||+||+++.|+||||+++.|++|+++++|++++|+|+|||..+
T Consensus        81 ~~~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~i~i~~~t~~g~~~rl~g~Gmp~~~  147 (181)
T 3agx_A           81 KDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDVIRPGMRRKVPGEGLPLPK  147 (181)
T ss_dssp             EECCCSSCEEETTEEEEEEEEEHHHHHHCEEEEEECTTSCEEEEEECSCCCTTCEEEETTCSCBCSS
T ss_pred             EEeccccceeeCCcEEEEEEcCHHHHhCCCEEEeECCCCCEEEEECCCccCCCcEEEECCcCCCcCC
Confidence            9999999999999999999999999999999999999998899999999999999999999999764

>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A

Probab=100.00  E-value=4.8e-37  Score=260.55  Aligned_cols=140  Identities=34%  Similarity=0.634  Sum_probs=131.1

Q ss_pred             CceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCC-CCCCCCCcEEEEEEe
Q 038604          170 PAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQ-EPGIIAADLIFIVDE  248 (315)
Q Consensus       170 ~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~-~~g~~~GDL~v~i~v  248 (315)
                      +|+.+.|.|||+|+|+||++++.+.+..  +.|.+  +.++++|+||+||++|++|+|+|+|++ .+++.+|||||+|++
T Consensus         1 ~d~~~~l~islee~~~G~~k~i~~~~~~--~~G~~--~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~gg~~GDl~v~i~v   76 (170)
T 1c3g_A            1 ETVQVNLPVSLEDLFVGKKKSFKIGRKG--PHGAS--EKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQE   76 (170)
T ss_dssp             CEEEEEEEECHHHHHHTCEEEEEEEEEE--TTTEE--EEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEE
T ss_pred             CCEEEEEEeEHHHhhCCcEEEEEEEEec--CCCcE--EeEEEEEEeCCCccCCCEEEEeccccCCCCCCccccEEEEEEE
Confidence            3789999999999999999999998873  45743  889999999999999999999999995 588899999999999


Q ss_pred             cCCCCeeecCCCeEEEEeeCHHHHHcCCeEEEecCCCcEEEEecCCCcCCCcEEEEcCCCcCCCC
Q 038604          249 KPHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPISK  313 (315)
Q Consensus       249 ~~h~~f~R~g~dL~~~~~Isl~eal~G~~~~i~tldG~~~~i~i~~~~~~g~~~~i~g~G~P~~~  313 (315)
                      ++|+.|+|+|+||+++++|||+||+||+++.|+||||+++.|++|+++++|+++||+|+|||..+
T Consensus        77 ~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~~i~i~~~t~~g~~~rl~g~G~p~~~  141 (170)
T 1c3g_A           77 KSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPK  141 (170)
T ss_dssp             CCCSSEEEETTEEEEEECCBHHHHHHCEEEEEECSSSCEEEEEESSCCCTTCEEECTTCSCBCSS
T ss_pred             ccCCccEEeCCcEeEEEEcCHHHHhCCCeEEeeCCCCCEEEEECCCccCCCcEEEEeCCCCCcCC
Confidence            99999999999999999999999999999999999998899999999999999999999999754

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=100.00  E-value=8.8e-37  Score=273.77  Aligned_cols=149  Identities=35%  Similarity=0.664  Sum_probs=135.2

Q ss_pred             cccCCceEEEEeeehhhHhcCceeEEEEeeeEEc----CCC---------------------------------------
Q 038604          166 FKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYD----SVG---------------------------------------  202 (315)
Q Consensus       166 ~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~----g~G---------------------------------------  202 (315)
                      ++++.|+.+.|.|||+|+|+|++++|.+.+.+.|    |+|                                       
T Consensus         8 ~~~g~d~~~~l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~   87 (248)
T 1nlt_A            8 PQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCH   87 (248)
T ss_dssp             CCBCCCEEEEEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCS
T ss_pred             CCCCCCEEEEEEecHHHhcCCceEEEEeeEEEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCceEEEEEEcCCCCC
Confidence            4578999999999999999999999999875431    111                                       


Q ss_pred             ------------------cEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCCCCCCCcEEEEEEecCCCCeeecCCCeEEE
Q 038604          203 ------------------KTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPGIIAADLIFIVDEKPHALYRRDGNDLVVG  264 (315)
Q Consensus       203 ------------------~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~g~~~GDL~v~i~v~~h~~f~R~g~dL~~~  264 (315)
                                        .++.+.++++|+|||||++|++|+|+|+|++.+++.+|||||+|++++|+.|+|+|+||+++
T Consensus        88 G~G~~i~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~g~~GDl~v~i~v~~h~~F~R~G~DL~~~  167 (248)
T 1nlt_A           88 GTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYE  167 (248)
T ss_dssp             SSSSCCCTTSBCSSSTTSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCTTCBCCCEEEEEEECCCSSCEEETTEEEEE
T ss_pred             CcCEEeccCCCCcccCCCceEeeeEEEEEEECCCccCCCEEEEeeeecCCCCCCcceEEEEEEEecCccceeeCCEEEEE
Confidence                              14567799999999999999999999999998888999999999999999999999999999


Q ss_pred             EeeCHHHHHcCCeEEEecCCCcEEEEecCCC--cCCCcEEEEcCCCcCCCCC
Q 038604          265 QEITLLEALTGKTLDLTTLDGRNLMIPLTDI--VKPGTEIVVPNEGMPISKE  314 (315)
Q Consensus       265 ~~Isl~eal~G~~~~i~tldG~~~~i~i~~~--~~~g~~~~i~g~G~P~~~~  314 (315)
                      ++|||+|||||++++|+||||+.+.|+||++  +++|++++|+|+|||..+.
T Consensus       168 ~~Isl~eAllG~~i~v~tldG~~~~i~ip~g~vt~~g~~~rl~g~Gmp~~~~  219 (248)
T 1nlt_A          168 AEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKY  219 (248)
T ss_dssp             EEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCSTTCEEEETTCSCBCSSS
T ss_pred             EEeCHHHHhcCCEEEEeCCCCCEEEEEeCCCCeeCCCeEEEEcCCCCccCCC
Confidence            9999999999999999999998899999977  9999999999999998654

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.90  E-value=6e-24  Score=156.69  Aligned_cols=74  Identities=59%  Similarity=1.034  Sum_probs=70.0

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCC
Q 038604            1 MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKS   77 (315)
Q Consensus         1 m~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~   77 (315)
                      |+.|||+||||+++|+.++||+|||+|+++||||+++.   +.+.+.|++|++||++|+||.+|+.||++|.+++.+
T Consensus         1 m~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~---~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~   74 (77)
T 1hdj_A            1 MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE---PGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLKG   74 (77)
T ss_dssp             CCCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC---TTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCCS
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHHCCHHHHHHHHHHccccccc
Confidence            89999999999999999999999999999999999986   568899999999999999999999999999987753

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.89  E-value=4.4e-24  Score=166.17  Aligned_cols=75  Identities=55%  Similarity=0.914  Sum_probs=69.9

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCC
Q 038604            1 MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKS   77 (315)
Q Consensus         1 m~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~   77 (315)
                      |..|||+||||+++|+.++||+|||+|+++||||+++.  .+++.++|++|++||++|+||.+|+.||++|++++..
T Consensus         1 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~--~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~   75 (103)
T 1bq0_A            1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQG--DKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQ   75 (103)
T ss_dssp             CCCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTT--TCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSCS
T ss_pred             CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC--cHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhcc
Confidence            78999999999999999999999999999999999975  2568899999999999999999999999999988764

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.86  E-value=1.7e-22  Score=152.69  Aligned_cols=74  Identities=50%  Similarity=0.851  Sum_probs=69.4

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCCC
Q 038604            2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKSG   78 (315)
Q Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~   78 (315)
                      ..|||+||||+++|+.++||+|||+|+++||||+++.   +++.++|++|++||++|+||.+|+.||.+|+.++..+
T Consensus         6 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~   79 (88)
T 2ctr_A            6 SGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS---PDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTSG   79 (88)
T ss_dssp             CCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCS---HHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHHTCS
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC---hHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccccC
Confidence            4799999999999999999999999999999999986   7789999999999999999999999999999887643

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.86  E-value=1.7e-22  Score=150.70  Aligned_cols=73  Identities=55%  Similarity=0.987  Sum_probs=67.4

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhcccccccc
Q 038604            2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGL   75 (315)
Q Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~   75 (315)
                      ..|||+||||+++|+.++||+|||+|+++||||+++. ..+.+.++|++|++||++|+||.+|+.||++|+.++
T Consensus         8 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~   80 (82)
T 2ej7_A            8 MVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPE-NKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGPS   80 (82)
T ss_dssp             SCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCST-THHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCSC
T ss_pred             CcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-cHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcccc
Confidence            4699999999999999999999999999999999986 345788999999999999999999999999998654

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.86  E-value=2.3e-22  Score=148.85  Aligned_cols=71  Identities=51%  Similarity=0.805  Sum_probs=66.0

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccc
Q 038604            2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEG   74 (315)
Q Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~   74 (315)
                      ..|||+||||+++|+.++||+|||+|+++||||+++.  .+++.++|++|++||++|+||.+|+.||++|..+
T Consensus         6 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~--~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   76 (79)
T 2dn9_A            6 SGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKD--DPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGP   76 (79)
T ss_dssp             CSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSS--CTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCC
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--CHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcC
Confidence            5799999999999999999999999999999999975  2568899999999999999999999999998754

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=3.9e-22  Score=147.29  Aligned_cols=70  Identities=53%  Similarity=0.878  Sum_probs=66.0

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccc
Q 038604            2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEG   74 (315)
Q Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~   74 (315)
                      ..|||+||||+++|+.++||+|||+|+++||||+++.   +.+.+.|++|++||++|+||.+|+.||++|..+
T Consensus         6 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   75 (78)
T 2ctp_A            6 SGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHA---PGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP   75 (78)
T ss_dssp             SCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSS---HHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence            4689999999999999999999999999999999976   678899999999999999999999999998764

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.85  E-value=3.6e-22  Score=150.85  Aligned_cols=70  Identities=53%  Similarity=0.879  Sum_probs=65.8

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccc
Q 038604            2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEG   74 (315)
Q Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~   74 (315)
                      ..|||+||||+++|+.++||+|||+|+++||||+++.   +.+.++|++|++||++|+||.+|+.||++|+..
T Consensus        16 ~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   85 (88)
T 2cug_A           16 DFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD---PGAEDRFIQISKAYEILSNEEKRTNYDHYGSGP   85 (88)
T ss_dssp             SSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCS---TTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC---hhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence            5799999999999999999999999999999999986   568899999999999999999999999998753

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.85  E-value=4.4e-22  Score=153.48  Aligned_cols=75  Identities=59%  Similarity=1.000  Sum_probs=66.6

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCC
Q 038604            2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKS   77 (315)
Q Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~   77 (315)
                      +.|||+||||+++|+.++||+|||+|+++||||+++. ..+.+.++|++|++||++|+||.+|+.||++|.+++.+
T Consensus         1 M~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~-~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~~   75 (99)
T 2lgw_A            1 MASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPD-NKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLTG   75 (99)
T ss_dssp             CCCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCS-CCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC----
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCc-cHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccC
Confidence            3799999999999999999999999999999999986 34678899999999999999999999999999887753

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=6.4e-22  Score=150.75  Aligned_cols=75  Identities=51%  Similarity=0.906  Sum_probs=68.9

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCC
Q 038604            2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKS   77 (315)
Q Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~   77 (315)
                      ..|||+||||+++|+.++||+|||+|+++||||+++. ..+.+.++|++|++||++|+||.+|+.||++|..++..
T Consensus         8 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~   82 (92)
T 2dmx_A            8 MANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPD-NKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWRA   82 (92)
T ss_dssp             CCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSS-CSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSSCC
T ss_pred             CcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCc-cHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccC
Confidence            3689999999999999999999999999999999986 33678899999999999999999999999999887654

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.85  E-value=3.9e-22  Score=151.91  Aligned_cols=72  Identities=50%  Similarity=0.881  Sum_probs=66.3

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCCC
Q 038604            2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKSG   78 (315)
Q Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~   78 (315)
                      ..|||+||||+++|+.++||+|||+|+++||||+++.     ..++|++|++||++|+||.+|+.||++|.+++..+
T Consensus         7 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-----~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~~   78 (92)
T 2o37_A            7 ETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTG-----DTEKFKEISEAFEILNDPQKREIYDQYGLEAARSG   78 (92)
T ss_dssp             CCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTC-----CHHHHHHHHHHHHHHTSHHHHHHHHHHCHHHHHTT
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-----hHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHhhcc
Confidence            5789999999999999999999999999999999975     24699999999999999999999999999887653

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.84  E-value=1.1e-21  Score=143.04  Aligned_cols=67  Identities=55%  Similarity=0.957  Sum_probs=61.2

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhcccccc
Q 038604            2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEE   73 (315)
Q Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~   73 (315)
                      ..|||+||||+++|+.++||+|||+|+++||||++++     +.+.|++|++||++|+||.+|+.||++|++
T Consensus         7 ~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~-----~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~   73 (73)
T 2och_A            7 ETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD-----GAEQFKQISQAYEVLSDEKKRQIYDQGGEE   73 (73)
T ss_dssp             CCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTT-----CHHHHHHHHHHHHHHTSHHHHHHHHHTC--
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcC-----HHHHHHHHHHHHHHHCCHHHHHHHHhcCCC
Confidence            4689999999999999999999999999999999975     257899999999999999999999999863

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.83  E-value=2.1e-21  Score=152.42  Aligned_cols=73  Identities=49%  Similarity=0.881  Sum_probs=67.8

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccC
Q 038604            2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLK   76 (315)
Q Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~   76 (315)
                      ..|||+||||+++|+.++||+|||+|+++||||+++.  .+++.++|++|++||++|+||.+|+.||++|..++.
T Consensus        16 ~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~--~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~~   88 (109)
T 2ctw_A           16 GESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPD--NPEAADKFKEINNAHAILTDATKRNIYDKYGSLGLY   88 (109)
T ss_dssp             SCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTT--CHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHHH
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC--cHHHHHHHHHHHHHHHHHcCHHHHHHHHHhcccccc
Confidence            5799999999999999999999999999999999985  367899999999999999999999999999987653

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=1.5e-21  Score=154.01  Aligned_cols=73  Identities=25%  Similarity=0.508  Sum_probs=67.4

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccC
Q 038604            2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLK   76 (315)
Q Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~   76 (315)
                      ..|||+||||+++|+.++||+|||+|+++||||+++.  .+++.++|++|++||++|+||.+|+.||++|..++.
T Consensus        19 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~--~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~   91 (112)
T 2ctq_A           19 TEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPE--NPKAVETFQKLQKAKEILTNEESRARYDHWRRSQMS   91 (112)
T ss_dssp             CCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTT--CSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTCS
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--cHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhccC
Confidence            4799999999999999999999999999999999985  256899999999999999999999999999987653

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=3.6e-21  Score=148.55  Aligned_cols=67  Identities=36%  Similarity=0.604  Sum_probs=62.7

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccc
Q 038604            2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLY   70 (315)
Q Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~   70 (315)
                      ..|||+||||+++|+.++||+|||+|+++||||+++.  .+++.++|++|++||++|+|+.+|+.||++
T Consensus        16 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~--~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~   82 (99)
T 2yua_A           16 RTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSG--SAEAAERFTRISQAYVVLGSATLRRKYDRG   82 (99)
T ss_dssp             SSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSS--CSHHHHHHHHHHHHHHHTTSHHHHHHHHHT
T ss_pred             ccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--CHHHHHHHHHHHHHHHHHCCHHHHHHHHHh
Confidence            5789999999999999999999999999999999975  267889999999999999999999999984

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.80  E-value=1.3e-20  Score=144.13  Aligned_cols=71  Identities=34%  Similarity=0.654  Sum_probs=64.0

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc----chhHHHHHHHHHHHHHHhcCChhhhhhhccccc
Q 038604            2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSH----KRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGE   72 (315)
Q Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~----~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~   72 (315)
                      ..|||+||||+++|+.++||+|||+|+++||||+++..    ..+.+.++|++|++||++|+||.+|+.||.+..
T Consensus        15 ~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   89 (94)
T 1wjz_A           15 KKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS   89 (94)
T ss_dssp             CSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence            46999999999999999999999999999999998631    235788999999999999999999999998654

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.79  E-value=3.3e-20  Score=145.71  Aligned_cols=72  Identities=35%  Similarity=0.614  Sum_probs=65.8

Q ss_pred             CCCcccccCCCCCC-CHHHHHHHHHHHHHHhCCCCCCC-cchhHHHHHHHHHHHHHHhcCChhhhhhhcccccc
Q 038604            2 GFDYYNILKVNRNA-NEDDLKKAYKRLAMIWHPDKNPS-HKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEE   73 (315)
Q Consensus         2 ~~~~y~iLgv~~~a-s~~eIk~ayr~la~~~hPd~~~~-~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~   73 (315)
                      ..|||+||||+++| +.++||+|||+|+++||||+++. ...+.+.++|++|++||++|+||.+|+.||+++..
T Consensus        14 ~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~   87 (109)
T 2qsa_A           14 LENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDH   87 (109)
T ss_dssp             TSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred             CCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccC
Confidence            47999999999999 99999999999999999999974 33567899999999999999999999999998763

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.77  E-value=1.5e-19  Score=157.42  Aligned_cols=73  Identities=41%  Similarity=0.818  Sum_probs=67.8

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCC
Q 038604            3 FDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKS   77 (315)
Q Consensus         3 ~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~   77 (315)
                      .|||+||||+++|+.++||+|||+|+++||||+++.  .+++.++|++|++||++|+||.+|+.||++|+.++..
T Consensus         2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~--~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~~   74 (210)
T 3apq_A            2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPN--NPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLED   74 (210)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTT--CTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCCT
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--ChHHHHHHHHHHHHHHHhCCHHHHHHHHHhccccccc
Confidence            699999999999999999999999999999999975  2578899999999999999999999999999887653

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.76  E-value=2.9e-19  Score=135.39  Aligned_cols=62  Identities=32%  Similarity=0.500  Sum_probs=57.9

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhh
Q 038604            2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQI   66 (315)
Q Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~   66 (315)
                      ..|||+||||+++|+.++||+|||+|+++||||+++.   +.+.++|++|++||++|+|+.+|+.
T Consensus        26 ~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~---~~~~~~f~~i~~Ay~~L~d~~~R~~   87 (90)
T 2ys8_A           26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVA---PGSEDAFKAVVNARTALLKNIKSGP   87 (90)
T ss_dssp             CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCC---TTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHHCCcccccC
Confidence            4799999999999999999999999999999999976   5688999999999999999998874

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.75  E-value=9.9e-19  Score=145.73  Aligned_cols=71  Identities=34%  Similarity=0.624  Sum_probs=63.9

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc----hhHHHHHHHHHHHHHHhcCChhhhhhhccccc
Q 038604            2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHK----RTEAEAKFKQISEAYDVLSDPQKRQIYDLYGE   72 (315)
Q Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~----~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~   72 (315)
                      ..|||+||||+++|+.++||+|||+|++++|||+++...    +..+.++|++|++||++|+||.+|+.||..+.
T Consensus         9 ~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~   83 (155)
T 2l6l_A            9 KKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRC   83 (155)
T ss_dssp             CSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHH
T ss_pred             CCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence            468999999999999999999999999999999997532    23578999999999999999999999998764

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.73  E-value=9.4e-19  Score=129.20  Aligned_cols=65  Identities=22%  Similarity=0.372  Sum_probs=58.1

Q ss_pred             CCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccc
Q 038604            3 FDYYNILKVNRN--ANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEG   74 (315)
Q Consensus         3 ~~~y~iLgv~~~--as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~   74 (315)
                      .++|+||||+++  |+.++||+|||+|+++||||++++      .++|++|++||++|+|+.+|.. +.||..+
T Consensus        11 ~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~------~~~f~~i~~AYe~L~~~~~r~~-~~~g~~~   77 (79)
T 1faf_A           11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS------HALMQELNSLWGTFKTEVYNLR-MNLGGTG   77 (79)
T ss_dssp             HHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC------HHHHHHHHHHHHHHHHHHHHHT-TCCSSCC
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC------HHHHHHHHHHHHHHhhHHHHHH-HhcCCcc
Confidence            368999999999  999999999999999999999865      4789999999999999999987 4566654

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.73  E-value=1.7e-19  Score=142.08  Aligned_cols=64  Identities=27%  Similarity=0.419  Sum_probs=60.0

Q ss_pred             CCcccccCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccc
Q 038604            3 FDYYNILKVNRNANE--DDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGE   72 (315)
Q Consensus         3 ~~~y~iLgv~~~as~--~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~   72 (315)
                      .+||+||||+++|+.  ++||+|||+||+++|||++++      .++|++|++||++|+||.+|+.||.+|.
T Consensus         8 ~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~------~e~f~~I~~AYevL~d~~~R~~~~~~~~   73 (114)
T 1gh6_A            8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD------EEKMKKMNTLYKKMEDGVKYAHQPDFGG   73 (114)
T ss_dssp             HHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT------TTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred             hhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc------HHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence            579999999999999  999999999999999999976      3689999999999999999999999875

>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}

Probab=99.73  E-value=5.4e-18  Score=132.74  Aligned_cols=62  Identities=18%  Similarity=0.347  Sum_probs=58.8

Q ss_pred             cCCCCeeecCCCeEEEEeeCHHHHHcCCeEEEecCCCcEEEEecCCCcCCCcEEEEcCCCcCC
Q 038604          249 KPHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPI  311 (315)
Q Consensus       249 ~~h~~f~R~g~dL~~~~~Isl~eal~G~~~~i~tldG~~~~i~i~~~~~~g~~~~i~g~G~P~  311 (315)
                      ++|+.|+|+|+||+++++|||+||++|+++.|+||||+ +.|+||+++++|+++||+|+|||.
T Consensus         2 kph~~F~R~G~DL~~~~~Isl~eAl~G~~i~v~tldG~-~~v~ip~g~~~G~~~rl~G~G~p~   63 (109)
T 3i38_A            2 NAHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKES-ILLTVPPGSQAGQRLRIKGKGLVS   63 (109)
T ss_dssp             --CCCCEEETTEEEEEEEECHHHHHHCEEEEECCSSSC-EEEEECTTCCTTCEEEETTCSCBC
T ss_pred             CCCCCeEEECCEEEEEEEcCHHHHhCCCEEEEEcCCCC-EEEeeCCCcCcCeEEEECCccCCC
Confidence            68999999999999999999999999999999999995 999999999999999999999997

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.71  E-value=1.4e-18  Score=130.66  Aligned_cols=62  Identities=26%  Similarity=0.432  Sum_probs=56.6

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhh
Q 038604            3 FDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQ   65 (315)
Q Consensus         3 ~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~   65 (315)
                      .++|+||||+++|+.+|||+|||+|+++||||++++ +.+.+.++|++|++||++|+|...|.
T Consensus        16 ~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~-~~~~a~~~F~~I~~AYevL~~~~~r~   77 (88)
T 1iur_A           16 KEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPE-NHDIANEVFKHLQNEINRLEKQAFLD   77 (88)
T ss_dssp             HHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSS-CHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-chHHHHHHHHHHHHHHHHHHhhcccc
Confidence            478999999999999999999999999999999987 33568999999999999999987774

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.71  E-value=4.3e-19  Score=149.22  Aligned_cols=64  Identities=27%  Similarity=0.409  Sum_probs=57.4

Q ss_pred             CCcccccCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccc
Q 038604            3 FDYYNILKVNRNAN--EDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGE   72 (315)
Q Consensus         3 ~~~y~iLgv~~~as--~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~   72 (315)
                      .|||+||||+++|+  .++||+|||+||+++|||++++      +++|++|++||++|+||.+|+.||++|.
T Consensus        11 ~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~------~e~F~~I~~AYevLsdp~kR~~YD~~G~   76 (174)
T 2pf4_E           11 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD------EEKMKKMNTLYKKMEDGVKYAHQPDFGG   76 (174)
T ss_dssp             HHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C------CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred             ccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC------HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence            47999999999998  6999999999999999999976      3689999999999999999999999996

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.69  E-value=9.3e-18  Score=141.79  Aligned_cols=70  Identities=24%  Similarity=0.389  Sum_probs=62.3

Q ss_pred             CCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcc---hhHHHHHHHHHHHHHHhcCChhhhhhhccccc
Q 038604            3 FDYYNILKVNRNA--NEDDLKKAYKRLAMIWHPDKNPSHK---RTEAEAKFKQISEAYDVLSDPQKRQIYDLYGE   72 (315)
Q Consensus         3 ~~~y~iLgv~~~a--s~~eIk~ayr~la~~~hPd~~~~~~---~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~   72 (315)
                      +|||+||||++++  +.++||+|||+|+++||||+++...   +..+.++|+.|++||++|+||.+|+.||....
T Consensus         1 ~d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~   75 (171)
T 1fpo_A            1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLH   75 (171)
T ss_dssp             CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhc
Confidence            4899999999999  9999999999999999999997632   23467899999999999999999999998643

>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}

Probab=99.68  E-value=4.4e-17  Score=130.00  Aligned_cols=62  Identities=37%  Similarity=0.636  Sum_probs=56.2

Q ss_pred             CeeecCCCeEEEEeeCHHHHHcCCeEEEecCCCcEEEEecCCC--cCCCcEEEEcCCCcCCCCC
Q 038604          253 LYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDI--VKPGTEIVVPNEGMPISKE  314 (315)
Q Consensus       253 ~f~R~g~dL~~~~~Isl~eal~G~~~~i~tldG~~~~i~i~~~--~~~g~~~~i~g~G~P~~~~  314 (315)
                      .|+|+|+||+++++|||++||||+++.|+||||+++.|+||++  +++|+++||+|+|||..+.
T Consensus         1 ~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~   64 (121)
T 1xao_A            1 SFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKY   64 (121)
T ss_dssp             CCEEETTEEEEEEEEEHHHHHHCEEEEEECTTSCEEEEEECTTSCCCTTCEEEETTCSCC----
T ss_pred             CceEECCeEEEEEEcCHHHHhCCCEEEEecCCCCEEEEEeCCCCeeCCCcEEEECCCCCCCCCC
Confidence            4999999999999999999999999999999998899999977  9999999999999997643

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.67  E-value=1.8e-17  Score=140.19  Aligned_cols=65  Identities=17%  Similarity=0.399  Sum_probs=58.9

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcch-hHHHHHHHHHHHHHHhcCChhhhhhh
Q 038604            3 FDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKR-TEAEAKFKQISEAYDVLSDPQKRQIY   67 (315)
Q Consensus         3 ~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~y   67 (315)
                      .|||+||||+++|+.++||+|||+|+++||||+++.... ..+.++|++|++||++|+|+.+|+.|
T Consensus       117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y  182 (182)
T 1n4c_A          117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY  182 (182)
T ss_dssp             CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence            589999999999999999999999999999999975221 23889999999999999999999987

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.67  E-value=3e-17  Score=142.57  Aligned_cols=68  Identities=26%  Similarity=0.504  Sum_probs=60.6

Q ss_pred             CCCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc---hhHHHHHHHHHHHHHHhcCChhhhhhhcc
Q 038604            2 GFDYYNILKVNRN--ANEDDLKKAYKRLAMIWHPDKNPSHK---RTEAEAKFKQISEAYDVLSDPQKRQIYDL   69 (315)
Q Consensus         2 ~~~~y~iLgv~~~--as~~eIk~ayr~la~~~hPd~~~~~~---~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~   69 (315)
                      ..|||+||||+++  ++.++||+|||+|+++||||+++...   +..+.++|++|++||++|+||.+|+.||.
T Consensus        42 ~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~  114 (207)
T 3bvo_A           42 TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLL  114 (207)
T ss_dssp             TCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence            4699999999986  79999999999999999999997532   23467899999999999999999999996

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.65  E-value=2.9e-17  Score=123.93  Aligned_cols=58  Identities=16%  Similarity=0.338  Sum_probs=51.5

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc-hhHHHHHHHHHHHHHHhcCC
Q 038604            3 FDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHK-RTEAEAKFKQISEAYDVLSD   60 (315)
Q Consensus         3 ~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~-~~~~~~~f~~i~~Ay~~L~d   60 (315)
                      .++|++|||++.||.+|||+|||+||++||||++++.. ...+.++|++|++||++|.+
T Consensus        33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            47999999999999999999999999999999998632 12588899999999999964

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.64  E-value=4.3e-17  Score=126.81  Aligned_cols=60  Identities=25%  Similarity=0.439  Sum_probs=52.3

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----chhHHHHHHHHHHHHHHhcCChh
Q 038604            2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSH-----KRTEAEAKFKQISEAYDVLSDPQ   62 (315)
Q Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~-----~~~~~~~~f~~i~~Ay~~L~d~~   62 (315)
                      +.|||+||+++. ||.++||+|||+||++||||+++..     .+..|.++|++|++||++|+|+.
T Consensus        40 ~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~  104 (106)
T 3ag7_A           40 GSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG  104 (106)
T ss_dssp             TSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             cCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence            469999999996 9999999999999999999998631     12257899999999999999975

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.63  E-value=6.7e-17  Score=116.81  Aligned_cols=56  Identities=25%  Similarity=0.326  Sum_probs=50.8

Q ss_pred             CCcccccCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhh
Q 038604            3 FDYYNILKVNR-NANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKR   64 (315)
Q Consensus         3 ~~~y~iLgv~~-~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r   64 (315)
                      .++|+||||++ +|+.++||+|||+|+++||||++.+      .++|++|++||++|+++..|
T Consensus        14 ~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~------~~~f~~i~~Aye~L~~~~~r   70 (71)
T 2guz_A           14 KEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS------PFLATKINEAKDFLEKRGIS   70 (71)
T ss_dssp             HHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCC------HHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC------HHHHHHHHHHHHHHhhhhhc
Confidence            37899999999 7999999999999999999999755      45899999999999988665

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.60  E-value=6e-17  Score=166.65  Aligned_cols=75  Identities=40%  Similarity=0.799  Sum_probs=40.9

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCCC
Q 038604            2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKSG   78 (315)
Q Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~   78 (315)
                      +.|||+||||+++|+.++||+|||+||++||||+++.  .+++.++|++|++||++|+||.+|+.||++|++++...
T Consensus        20 ~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~--~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~~~   94 (780)
T 3apo_A           20 DQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPN--NPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDN   94 (780)
T ss_dssp             ---CHHHHTCCTTCCHHHHHHHHCC-------------------------CTHHHHHHSHHHHHHHTTC--------
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--ChHHHHHHHHHHHHHHHHcChHHHHHHHhhcccccccC
Confidence            5799999999999999999999999999999999975  26788999999999999999999999999999887643

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.59  E-value=1.9e-16  Score=134.77  Aligned_cols=65  Identities=26%  Similarity=0.500  Sum_probs=58.6

Q ss_pred             CCCccccc------CCCC-CCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhcccc
Q 038604            2 GFDYYNIL------KVNR-NANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYG   71 (315)
Q Consensus         2 ~~~~y~iL------gv~~-~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G   71 (315)
                      ..|||+||      |+.+ +|+.++||+|||+|+++||||+++.     +.++|++|++||++|+||.+|+.||...
T Consensus        10 ~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~-----a~~~f~~i~~AY~vL~dp~~R~~Yd~~l   81 (181)
T 3uo3_A           10 TSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ-----GSEQSSTLNQAYHTLKDPLRRSQYMLKL   81 (181)
T ss_dssp             SCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS-----CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred             CCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc-----HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence            46999999      4665 8999999999999999999999975     4578999999999999999999999854

>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}

Probab=99.33  E-value=8.6e-13  Score=103.05  Aligned_cols=81  Identities=17%  Similarity=0.167  Sum_probs=69.3

Q ss_pred             cccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCCCCCCCcEEEE
Q 038604          166 FKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPGIIAADLIFI  245 (315)
Q Consensus       166 ~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~g~~~GDL~v~  245 (315)
                      .+.+.|+++.++|||.||+.|++++|...      +|       .++|+||+|+++|++++|+|+|++..+ .+|||||+
T Consensus         8 ~R~G~DL~~~~~Isl~eAl~G~~i~v~tl------dG-------~~~v~ip~g~~~G~~~rl~G~G~p~~~-~~GDL~v~   73 (109)
T 3i38_A            8 DIVGHNLEIVLPLAPWEAALGAKVTVPTL------KE-------SILLTVPPGSQAGQRLRIKGKGLVSKT-HTGDLFAV   73 (109)
T ss_dssp             EEETTEEEEEEEECHHHHHHCEEEEECCS------SS-------CEEEEECTTCCTTCEEEETTCSCBCSS-CBCCEEEE
T ss_pred             EEECCEEEEEEEcCHHHHhCCCEEEEEcC------CC-------CEEEeeCCCcCcCeEEEECCccCCCCC-CCcCEEEE
Confidence            46788999999999999999998887764      56       579999999999999999999998744 78999999


Q ss_pred             EEecCCCCeeecCCC
Q 038604          246 VDEKPHALYRRDGND  260 (315)
Q Consensus       246 i~v~~h~~f~R~g~d  260 (315)
                      |+|.-+.....+..+
T Consensus        74 ~~V~~P~~Ls~~q~~   88 (109)
T 3i38_A           74 IKIVMPTKPDEKARE   88 (109)
T ss_dssp             EEECCCSSCCHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            999988766554433

>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}

Probab=99.26  E-value=5e-12  Score=100.60  Aligned_cols=84  Identities=18%  Similarity=0.132  Sum_probs=68.1

Q ss_pred             cccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCC--CCCCCEEEecCCCCCCCCC-CCCcE
Q 038604          166 FKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPG--WKKGTKITFPEKGNQEPGI-IAADL  242 (315)
Q Consensus       166 ~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G--~~~G~~i~~~g~G~~~~g~-~~GDL  242 (315)
                      .|++.||++.++|||.+|+.|+++.|...      +|      +.++|+||+|  +++|++++|+|+|++..+. .+|||
T Consensus         3 ~R~G~DL~~~~~Isl~eAllG~~i~v~tl------dG------~~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~~~GDL   70 (121)
T 1xao_A            3 KRDGDDLVYEAEIDLLTAIAGGEFALEHV------SG------DWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNL   70 (121)
T ss_dssp             EEETTEEEEEEEEEHHHHHHCEEEEEECT------TS------CEEEEEECTTSCCCTTCEEEETTCSCC------CCCE
T ss_pred             eEECCeEEEEEEcCHHHHhCCCEEEEecC------CC------CEEEEEeCCCCeeCCCcEEEECCCCCCCCCCCCCCCE
Confidence            35788999999999999999998888754      67      3689999999  9999999999999985433 68999


Q ss_pred             EEEEEecCCCC--eeecCCCe
Q 038604          243 IFIVDEKPHAL--YRRDGNDL  261 (315)
Q Consensus       243 ~v~i~v~~h~~--f~R~g~dL  261 (315)
                      ||++.|.-+..  ++.+..++
T Consensus        71 ~V~~~V~~P~~~~ls~~q~~~   91 (121)
T 1xao_A           71 IIKFTIKFPENHFTSEENLKK   91 (121)
T ss_dssp             EEEEEEECCCTTCSCHHHHHH
T ss_pred             EEEEEEECCCCCCCCHHHHHH
Confidence            99999998876  55554433

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.02  E-value=1.6e-10  Score=108.75  Aligned_cols=67  Identities=46%  Similarity=0.814  Sum_probs=56.8

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc-hhHHHHHHHHHHHHHHhcCChhhhhhhcc
Q 038604            3 FDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHK-RTEAEAKFKQISEAYDVLSDPQKRQIYDL   69 (315)
Q Consensus         3 ~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~   69 (315)
                      .++|.+||+.++++.++|+++|+++++++|||+.+... +..+.++|++|++||++|+|+++|..||.
T Consensus       382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~  449 (450)
T 2y4t_A          382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD  449 (450)
T ss_dssp             CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred             hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence            48999999999999999999999999999999997621 35688999999999999999999999996

>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A

Probab=98.99  E-value=3.8e-10  Score=95.97  Aligned_cols=81  Identities=19%  Similarity=0.139  Sum_probs=68.8

Q ss_pred             cccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCCC--CCCCcEE
Q 038604          166 FKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPG--IIAADLI  243 (315)
Q Consensus       166 ~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~g--~~~GDL~  243 (315)
                      .+.+.||+++++|||.||+.|++++|...      +|      +.++|.||+|+++|++++|+|+|.+..+  +.+||||
T Consensus        89 ~R~G~DL~~~~~Isl~eAllG~~i~v~tl------dG------~~~~i~i~~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~  156 (181)
T 3agx_A           89 KRDGSDVIYPARISLREALCGCTVNVPTL------DG------RTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLI  156 (181)
T ss_dssp             EEETTEEEEEEEEEHHHHHHCEEEEEECT------TS------CEEEEEECSCCCTTCEEEETTCSCBCSSSTTSBCCEE
T ss_pred             eeeCCcEEEEEEcCHHHHhCCCEEEeECC------CC------CEEEEECCCccCCCcEEEECCcCCCcCCCCCCcCCEE
Confidence            46789999999999999999998888765      67      3688999999999999999999998542  4579999


Q ss_pred             EEEEecCCCCeeecC
Q 038604          244 FIVDEKPHALYRRDG  258 (315)
Q Consensus       244 v~i~v~~h~~f~R~g  258 (315)
                      |+++|.-+..++.+.
T Consensus       157 V~~~V~~P~~ls~~q  171 (181)
T 3agx_A          157 IEFEVIFPERIPQTS  171 (181)
T ss_dssp             EEEEEECCSCCCHHH
T ss_pred             EEEEEECCCCCCHHH
Confidence            999999887655433

>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A

Probab=98.98  E-value=3.3e-10  Score=95.34  Aligned_cols=80  Identities=18%  Similarity=0.179  Sum_probs=68.1

Q ss_pred             cccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCCC--CCCCcEE
Q 038604          166 FKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPG--IIAADLI  243 (315)
Q Consensus       166 ~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~g--~~~GDL~  243 (315)
                      .+.+.||+++++|||.||+.|++++|...      +|      +.++|.||+|+++|++++|+|+|.+..+  +.+||||
T Consensus        83 ~R~G~DL~~~~~Isl~eAllG~~~~v~tl------dG------~~~~i~i~~~t~~g~~~rl~g~G~p~~~~~~~~GDL~  150 (170)
T 1c3g_A           83 KRDGDDLIYTLPLSFKESLLGFSKTIQTI------DG------RTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLI  150 (170)
T ss_dssp             EEETTEEEEEECCBHHHHHHCEEEEEECS------SS------CEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEE
T ss_pred             EEeCCcEeEEEEcCHHHHhCCCeEEeeCC------CC------CEEEEECCCccCCCcEEEEeCCCCCcCCCCCCCCCEE
Confidence            46789999999999999999999888765      67      3688999999999999999999998532  3579999


Q ss_pred             EEEEecCCCCeeec
Q 038604          244 FIVDEKPHALYRRD  257 (315)
Q Consensus       244 v~i~v~~h~~f~R~  257 (315)
                      |+++|.-+..++.+
T Consensus       151 V~~~V~~P~~Ls~~  164 (170)
T 1c3g_A          151 VKYKVDYPISLNDA  164 (170)
T ss_dssp             EEECCBCCSSCCTT
T ss_pred             EEEEEECCCCCCHH
Confidence            99999988765543

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=98.97  E-value=9e-10  Score=98.23  Aligned_cols=84  Identities=18%  Similarity=0.144  Sum_probs=66.2

Q ss_pred             cccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCC--CCCCCEEEecCCCCCCCCC-CCCcE
Q 038604          166 FKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPG--WKKGTKITFPEKGNQEPGI-IAADL  242 (315)
Q Consensus       166 ~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G--~~~G~~i~~~g~G~~~~g~-~~GDL  242 (315)
                      .|.+.||+++++|||.||+.|.+++|...      +|      +.++|+||+|  +++|++++|+|+|.+.... ..|||
T Consensus       158 ~R~G~DL~~~~~Isl~eAllG~~i~v~tl------dG------~~~~i~ip~g~vt~~g~~~rl~g~Gmp~~~~~~~GDL  225 (248)
T 1nlt_A          158 KRDGDDLVYEAEIDLLTAIAGGEFALEHV------SG------DWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNL  225 (248)
T ss_dssp             EEETTEEEEEEEEEHHHHHHCBCCEEECS------SS------CEEECCBCTTTTCSTTCEEEETTCSCBCSSSCSBCCE
T ss_pred             eeeCCEEEEEEEeCHHHHhcCCEEEEeCC------CC------CEEEEEeCCCCeeCCCeEEEEcCCCCccCCCCCcCCE
Confidence            46789999999999999999999988765      67      3689999999  9999999999999985332 57999


Q ss_pred             EEEEEecCCCC--eeecCCCe
Q 038604          243 IFIVDEKPHAL--YRRDGNDL  261 (315)
Q Consensus       243 ~v~i~v~~h~~--f~R~g~dL  261 (315)
                      ||+|.|.-+..  ++.+...|
T Consensus       226 ~V~~~V~~P~~~~Ls~~q~~~  246 (248)
T 1nlt_A          226 IIKFTIKDPENHFTSEENLKK  246 (248)
T ss_dssp             EEEEEEECCC-----------
T ss_pred             EEEEEEECCCCCCCCHHHHHh
Confidence            99999998876  66555544

>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}

Probab=98.97  E-value=5.6e-10  Score=94.83  Aligned_cols=80  Identities=15%  Similarity=0.034  Sum_probs=68.2

Q ss_pred             cccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCCC--CCCCcEE
Q 038604          166 FKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPG--IIAADLI  243 (315)
Q Consensus       166 ~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~g--~~~GDL~  243 (315)
                      .+.+.||+++++|||.||+.|++++|...      +|      +.++|.||+|+++|++++|+|+|.+..+  +.+||||
T Consensus        89 ~R~G~DL~~~~~Isl~eAllG~~i~v~tl------dG------~~v~i~ip~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~  156 (180)
T 2q2g_A           89 TRDDCHLIMKVTIPLVRALTGFTCPVTTL------DN------RNLQIPIKEIVNPKTRKIVPNEGMPIKNQPGQKGDLI  156 (180)
T ss_dssp             EEETTEEEEEEEEEHHHHHHCEEEEEECT------TC------CEEEEEECSCCCTTCEEEETTCSCBCSSSTTCBCCEE
T ss_pred             EEcCCEEEEEEEcCHHHHhCCCEEEeeCC------CC------CEEEEECCCccCCCEEEEECCcCCCcCCCCCCcCCEE
Confidence            46789999999999999999998888765      67      3688999999999999999999998532  4579999


Q ss_pred             EEEEecCCCCeeec
Q 038604          244 FIVDEKPHALYRRD  257 (315)
Q Consensus       244 v~i~v~~h~~f~R~  257 (315)
                      |+++|.-+..++.+
T Consensus       157 V~~~V~~P~~Ls~~  170 (180)
T 2q2g_A          157 LEFDICFPKSLTPE  170 (180)
T ss_dssp             EEEEEECCSCCCHH
T ss_pred             EEEEEECCCCCCHH
Confidence            99999988765543

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=98.95  E-value=5.3e-10  Score=78.57  Aligned_cols=50  Identities=18%  Similarity=0.164  Sum_probs=45.0

Q ss_pred             cccccCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCC
Q 038604            5 YYNILKVNRN---ANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSD   60 (315)
Q Consensus         5 ~y~iLgv~~~---as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d   60 (315)
                      =|.||||++.   ++.++|+++||+|+..+|||+..+      .....+|++|++.|..
T Consensus         6 A~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS------~yl~~ki~~Ake~l~~   58 (65)
T 2guz_B            6 SCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGS------FYLQSKVYRAAERLKW   58 (65)
T ss_dssp             HHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCC------HHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCC------HHHHHHHHHHHHHHHH
Confidence            3789999999   999999999999999999999876      5678889999999864

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=98.83  E-value=2e-09  Score=99.68  Aligned_cols=81  Identities=17%  Similarity=0.169  Sum_probs=68.9

Q ss_pred             cccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCCCCCCCcEEEE
Q 038604          166 FKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPGIIAADLIFI  245 (315)
Q Consensus       166 ~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~g~~~GDL~v~  245 (315)
                      .+.+.||.++++|+|.||+.|++++|...      +|       .++|+||+|+++|++++|+|+|.+.. ..+|||||+
T Consensus       228 ~R~G~DL~~~~~Isl~eAllG~~v~VptL------dG-------~v~l~ip~gt~~g~~~rl~G~GmP~~-~~rGDL~v~  293 (329)
T 3lz8_A          228 DIVGHNLEIVLPLAPWEAALGAKVTVPTL------KE-------SILLTVPPGSQAGQRLRIKGKGLVSK-THTGDLFAV  293 (329)
T ss_dssp             EEETTEEEEEEEECHHHHHHCEEEEECCS------SS-------CEEEEECTTCCTTCEEEETTCSCBCS-SCBCCEEEE
T ss_pred             EEcCCcEEEEEECCHHHHcCCCeEEEECC------CC-------CEEEEECCCCCCCCEEEEcCCCCCCC-CCCCCEEEE
Confidence            46789999999999999999998888765      67       36899999999999999999999855 468999999


Q ss_pred             EEecCCCCeeecCCC
Q 038604          246 VDEKPHALYRRDGND  260 (315)
Q Consensus       246 i~v~~h~~f~R~g~d  260 (315)
                      |.|.-++....+...
T Consensus       294 ~~V~~P~~l~~~q~~  308 (329)
T 3lz8_A          294 IKIVMPTKPDEKARE  308 (329)
T ss_dssp             EEECCCSSCCHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            999988766544433

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.50  E-value=0.011  Score=44.82  Aligned_cols=29  Identities=10%  Similarity=0.116  Sum_probs=25.0

Q ss_pred             CceEEEEeeehhhHhcCceeEEEEeeeEE
Q 038604          170 PAVENLLPCSLEEIYKGAKKKMRISRNVY  198 (315)
Q Consensus       170 ~di~~~l~vsl~e~~~G~~k~i~~~r~~~  198 (315)
                      .++.+.|.|||+|||+|++++|.+.+.+.
T Consensus         2 ~~~~~~l~vslee~~~G~~~~i~~~~~~~   30 (104)
T 2ctt_A            2 SSGSSGMELTFNQAAKGVNKEFTVNIMDT   30 (104)
T ss_dssp             CCCCCCCCCCCSSCCSSSCTTCCSSCCEE
T ss_pred             CceEEEEEEEHHHHcCCCEEEEEeeeeeE
Confidence            46778899999999999999998877665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	315
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	3e-22
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	3e-21
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	4e-20
d1c3ga1	80	b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Ba	1e-18
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	5e-18
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	2e-17
d1iura_	88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	1e-16
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	5e-16
d1gh6a_	114	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	6e-15
d1nlta1	74	b.4.1.1 (A:110-138,A:213-257) Mitochondrial protei	5e-11
d1nlta2	80	b.4.1.1 (A:258-337) Mitochondrial protein import p	6e-11
d1c3ga2	90	b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Ba	1e-09

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 86.2 bits (213), Expect = 3e-22
 Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 2/73 (2%)

Query: 4  DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
          DYY IL V++ A E +++KAYKRLAM +HPD+N   K    EAKFK+I EAY+VL+D QK
Sbjct: 4  DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEA--EAKFKEIKEAYEVLTDSQK 61

Query: 64 RQIYDLYGEEGLK 76
          R  YD YG    +
Sbjct: 62 RAAYDQYGHAAFE 74

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.6 bits (206), Expect = 3e-21
 Identities = 44/78 (56%), Positives = 59/78 (75%), Gaps = 3/78 (3%)

Query: 1  MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSD 60
          MG DYY  L + R A+++++K+AY+R A+ +HPDKN       AE KFK+I+EAYDVLSD
Sbjct: 1  MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPG---AEEKFKEIAEAYDVLSD 57

Query: 61 PQKRQIYDLYGEEGLKSG 78
          P+KR+I+D YGEEGLK  
Sbjct: 58 PRKREIFDRYGEEGLKGS 75

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 81.3 bits (200), Expect = 4e-20
 Identities = 25/75 (33%), Positives = 45/75 (60%), Gaps = 4/75 (5%)

Query: 1  MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKN----PSHKRTEAEAKFKQISEAYD 56
          +  D+Y+IL  + +AN  DLK+ Y++L +++HPDK     P+    E   KF +I +A+ 
Sbjct: 14 LKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWK 73

Query: 57 VLSDPQKRQIYDLYG 71
          +L + + ++ YDL  
Sbjct: 74 ILGNEETKKKYDLQR 88

>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 76.9 bits (189), Expect = 1e-18
 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 5/81 (6%)

Query: 172 VENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKG 231
           V+  LP SLE+++ G KK  +I R       +   ++    +++KPGWK GTKIT+  +G
Sbjct: 3   VQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQID----IQLKPGWKAGTKITYKNQG 58

Query: 232 NQEP-GIIAADLIFIVDEKPH 251
           +  P       L F++ EK H
Sbjct: 59  DYNPQTGRRKTLQFVIQEKSH 79

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 75.1 bits (184), Expect = 5e-18
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 4  DYYNILKVNRNANED--DLKKAYKRLAMIWHPDKNPSHKRTEAE---AKFKQISEAYDVL 58
          DY+ +  +      D   L   ++ L   +HPDK  S  + E      +   I++A+  L
Sbjct: 2  DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61

Query: 59 SDPQKRQIYDL 69
            P  R  Y L
Sbjct: 62 RHPLMRAEYLL 72

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.8 bits (181), Expect = 2e-17
 Identities = 12/67 (17%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 2  GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPS-HKRTEAEAKFKQISEAYDVLSD 60
          G   +  + +      + +KK Y++  ++ HPDK         A+  F ++++A+    +
Sbjct: 32 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFEN 91

Query: 61 PQKRQIY 67
            ++ +Y
Sbjct: 92 QGQKPLY 98

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.6 bits (175), Expect = 1e-16
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 4  DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
          +  ++++      E + KK  +RL + WHPDKNP      A   FK +    + L    K
Sbjct: 17 EVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNP-ENHDIANEVFKHLQNEINRLE---K 72

Query: 64 RQIYDLYGEEGLK 76
          +   D   +   +
Sbjct: 73 QAFLDQNADRASR 85

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 69.6 bits (170), Expect = 5e-16
 Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 8/70 (11%)

Query: 4  DYYNILKVNRNA--NEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDP 61
              +LK+ R    +   +++AYK+ +++ HPDK  SH         ++++  +      
Sbjct: 12 RLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHAL------MQELNSLWGTFKTE 65

Query: 62 QKRQIYDLYG 71
                +L G
Sbjct: 66 VYNLRMNLGG 75

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

 Score = 67.9 bits (165), Expect = 6e-15
 Identities = 23/127 (18%), Positives = 46/127 (36%), Gaps = 28/127 (22%)

Query: 4   DYYNILKVNRNA--NEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDP 61
              ++L + R+A  N   ++KAY +    +HPDK    ++       K+++  Y  + D 
Sbjct: 9   QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEK------MKKMNTLYKKMEDG 62

Query: 62  QKRQIYDLYGEEGLKSGTVPTSSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDI--YE 119
            K      +G     +               G   + Q         +N  + E++   E
Sbjct: 63  VKYAHQPDFGGFWDATE----------IPTYGTDEWEQ--------WWNAFNEENLFCSE 104

Query: 120 ELFGSES 126
           E+  S+ 
Sbjct: 105 EMPSSDD 111

>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 74

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.9 bits (134), Expect = 5e-11
 Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 13/85 (15%)

Query: 167 KKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKIT 226
           ++   +++ +  SLEE+YKG   K+ ++R +               V ++PG K G +I 
Sbjct: 2   QRGKDIKHEISASLEELYKGRTAKLALNRKIL-------------EVHVEPGMKDGQRIV 48

Query: 227 FPEKGNQEPGIIAADLIFIVDEKPH 251
           F  + +Q P +I  D++FIV E+PH
Sbjct: 49  FKGEADQAPDVIPGDVVFIVSERPH 73

>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.7 bits (134), Expect = 6e-11
 Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 2/64 (3%)

Query: 254 YRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLM--IPLTDIVKPGTEIVVPNEGMPI 311
           ++RDG+DLV   EI LL A+ G    L  + G  L   I   +++ PG   V+  +GMPI
Sbjct: 2   FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI 61

Query: 312 SKEP 315
            K  
Sbjct: 62  PKYG 65

>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 90

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.3 bits (125), Expect = 1e-09
 Identities = 21/62 (33%), Positives = 34/62 (54%)

Query: 254 YRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPISK 313
           ++RDG+DL+    ++  E+L G +  + T+DGR L +     V+P      P +GMP  K
Sbjct: 2   FKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPK 61

Query: 314 EP 315
            P
Sbjct: 62  NP 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	315
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.91
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.84
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.82
d1c3ga1	80	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	99.79
d1nlta1	74	Mitochondrial protein import protein mas5 (Hsp40,	99.78
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.72
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.72
d1c3ga2	90	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	99.71
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.7
d1nlta2	80	Mitochondrial protein import protein mas5 (Hsp40,	99.65
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.65
d1c3ga2	90	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	99.27
d1nlta2	80	Mitochondrial protein import protein mas5 (Hsp40,	99.18
d1nlta1	74	Mitochondrial protein import protein mas5 (Hsp40,	98.88
d1c3ga1	80	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	97.98

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3e-25  Score=161.68  Aligned_cols=74  Identities=59%  Similarity=1.034  Sum_probs=70.4

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCC
Q 038604            1 MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKS   77 (315)
Q Consensus         1 m~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~   77 (315)
                      |++|||+||||+++||.++|++||++|++++|||+++.   +++.++|+.|++||+||+||.+|+.||++|++++++
T Consensus         1 m~kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~---~~~~~~~~~i~~Ay~vLsdp~~R~~YD~~g~~~~~g   74 (77)
T d1hdja_           1 MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE---PGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLKG   74 (77)
T ss_dssp             CCCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC---TTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCCS
T ss_pred             CCCChHHHcCCCCCcCHHHHHHHHHHHHHHhccccccc---hhHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcC
Confidence            89999999999999999999999999999999999976   668889999999999999999999999999998853

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=4.2e-25  Score=159.97  Aligned_cols=73  Identities=56%  Similarity=0.941  Sum_probs=67.7

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccC
Q 038604            2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLK   76 (315)
Q Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~   76 (315)
                      .+|||+||||+++||.+|||+|||+|+++||||+++.  .+.+.++|.+|++||+||+||.+|..||+||+.++.
T Consensus         2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~--~~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~e   74 (75)
T d1xbla_           2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQG--DKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFE   74 (75)
T ss_dssp             CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTT--TCHHHHHHHHHHHHHHHTTSSHHHHHHHHHTTSSCC
T ss_pred             CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCC--ChHHHHHHHHHHHHHHhcCCHHHHHHHHHhCccccC
Confidence            4799999999999999999999999999999999975  256788999999999999999999999999988764

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=4.5e-22  Score=150.01  Aligned_cols=71  Identities=34%  Similarity=0.658  Sum_probs=64.1

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc----hhHHHHHHHHHHHHHHhcCChhhhhhhcccc
Q 038604            1 MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHK----RTEAEAKFKQISEAYDVLSDPQKRQIYDLYG   71 (315)
Q Consensus         1 m~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~----~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G   71 (315)
                      |..|||+||||+++|+.++||+||++|+++||||+++...    .+.+.++|+.|++||++|+||.+|+.||...
T Consensus        14 ~~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~~   88 (94)
T d1wjza_          14 LKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQR   88 (94)
T ss_dssp             SCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHS
T ss_pred             hccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcc
Confidence            5689999999999999999999999999999999986522    3568889999999999999999999999853

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.82  E-value=6.4e-22  Score=154.68  Aligned_cols=66  Identities=27%  Similarity=0.395  Sum_probs=60.6

Q ss_pred             CCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccc
Q 038604            3 FDYYNILKVNRNA--NEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEG   74 (315)
Q Consensus         3 ~~~y~iLgv~~~a--s~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~   74 (315)
                      .|||+||||+++|  +.++||+|||+||++||||++++      .++|++|++||+||+|+.+|+.||.++...
T Consensus         8 ~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~------~e~F~~I~~AY~vLsd~~kR~~YD~~~~~~   75 (114)
T d1gh6a_           8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD------EEKMKKMNTLYKKMEDGVKYAHQPDFGGFW   75 (114)
T ss_dssp             HHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT------TTTTHHHHHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhh------HHHHHHHHHHHHHhCCHHHHHHHhccCCCC
Confidence            4799999999999  78899999999999999999986      257999999999999999999999987654

>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=1.9e-19  Score=131.60  Aligned_cols=78  Identities=36%  Similarity=0.670  Sum_probs=70.7

Q ss_pred             ceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCCC-CCCCcEEEEEEec
Q 038604          171 AVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPG-IIAADLIFIVDEK  249 (315)
Q Consensus       171 di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~g-~~~GDL~v~i~v~  249 (315)
                      ++.+.|+|||+|+|+|+++.+++.|..|++.+    +.++++|.||||+++|++|+|+|+|++.++ +.+|||+|+|+++
T Consensus         2 ~v~~~l~vtLee~~~G~~k~i~~~r~~~~g~~----~~~~~~v~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~~~i~~~   77 (80)
T d1c3ga1           2 TVQVNLPVSLEDLFVGKKKSFKIGRKGPHGAS----EKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEK   77 (80)
T ss_dssp             EEEEEEEECHHHHHHTCEEEEEEEEEETTTEE----EEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEEC
T ss_pred             CEEEEeEEEHHHHhCCCceEeecceecccCCC----ceEEEEEEECCCCCCCcEEEECCccccCcCCCCCCCEEEEEEeC
Confidence            68899999999999999999999998875433    567899999999999999999999999754 5789999999999


Q ss_pred             CCC
Q 038604          250 PHA  252 (315)
Q Consensus       250 ~h~  252 (315)
                      +||
T Consensus        78 ~HP   80 (80)
T d1c3ga1          78 SHP   80 (80)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            997

>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=6e-19  Score=126.88  Aligned_cols=73  Identities=37%  Similarity=0.784  Sum_probs=68.3

Q ss_pred             ccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCCCCCCCcEEEEE
Q 038604          167 KKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPGIIAADLIFIV  246 (315)
Q Consensus       167 ~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~g~~~GDL~v~i  246 (315)
                      +++.|+++.|+|||+|||+|+++++.+.             .++++|+||+|+.+|++|+|+|+|++.+++.+|||+|+|
T Consensus         2 rkg~di~~~l~isleea~~G~~~~~~~~-------------~~~~~i~Ip~G~~~G~~ir~~g~G~~~~~~~~GDl~v~i   68 (74)
T d1nlta1           2 QRGKDIKHEISASLEELYKGRTAKLALN-------------RKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIV   68 (74)
T ss_dssp             CBCCCEEEEEEECTTHHHHCEEEEEEEE-------------EEEEEEEECTTCCTTCEEEETTCSCCCTTCBCCCEEEEE
T ss_pred             CCCCCEEEEEEecHHHHHhhcccceeec-------------CccEEEEecccccCCeEEEecCCcCCCCCCCCCCEEEEE
Confidence            5788999999999999999999999875             258999999999999999999999999898999999999


Q ss_pred             EecCCC
Q 038604          247 DEKPHA  252 (315)
Q Consensus       247 ~v~~h~  252 (315)
                      +++||+
T Consensus        69 ~~~pHk   74 (74)
T d1nlta1          69 SERPHK   74 (74)
T ss_dssp             EECCCS
T ss_pred             EecCCC
Confidence            999995

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.72  E-value=5.2e-19  Score=128.09  Aligned_cols=61  Identities=21%  Similarity=0.385  Sum_probs=56.8

Q ss_pred             CCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhcc
Q 038604            3 FDYYNILKVNRNA--NEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDL   69 (315)
Q Consensus         3 ~~~y~iLgv~~~a--s~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~   69 (315)
                      .+||+||||++++  +.++||+|||+|+++||||++.+      .++|++|++||++|+|+.+|..||.
T Consensus        11 ~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g~------~e~~~~in~Ay~~L~d~~~r~~~~~   73 (79)
T d1fafa_          11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS------HALMQELNSLWGTFKTEVYNLRMNL   73 (79)
T ss_dssp             HHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC------HHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCCC------HHHHHHHHHHHHHHCCHHHHHHHcc
Confidence            4799999999998  99999999999999999999865      3689999999999999999999986

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=1.1e-18  Score=126.19  Aligned_cols=67  Identities=25%  Similarity=0.435  Sum_probs=58.7

Q ss_pred             CCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcc---hhHHHHHHHHHHHHHHhcCChhhhhhhcc
Q 038604            3 FDYYNILKVNRNA--NEDDLKKAYKRLAMIWHPDKNPSHK---RTEAEAKFKQISEAYDVLSDPQKRQIYDL   69 (315)
Q Consensus         3 ~~~y~iLgv~~~a--s~~eIk~ayr~la~~~hPd~~~~~~---~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~   69 (315)
                      +|||+||||++.+  +.++||+|||+++++||||+.....   +..+.+.|+.|++||+||+||.+|+.|+.
T Consensus         1 lnyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll   72 (76)
T d1fpoa1           1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLL   72 (76)
T ss_dssp             CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             CChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            5899999999865  5899999999999999999975422   34578889999999999999999999975

>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=5.9e-18  Score=126.27  Aligned_cols=62  Identities=32%  Similarity=0.604  Sum_probs=59.4

Q ss_pred             CeeecCCCeEEEEeeCHHHHHcCCeEEEecCCCcEEEEecCCCcCCCcEEEEcCCCcCCCCC
Q 038604          253 LYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPISKE  314 (315)
Q Consensus       253 ~f~R~g~dL~~~~~Isl~eal~G~~~~i~tldG~~~~i~i~~~~~~g~~~~i~g~G~P~~~~  314 (315)
                      .|+|+|+||+++++||++||++|+++.|+|+||+.+.|++|+++++|++++|+|+|||.+++
T Consensus         1 ~F~R~G~DL~~~~~I~~~eal~G~~~~i~~~dG~~i~i~ip~~~~~g~~~~i~g~G~p~~~~   62 (90)
T d1c3ga2           1 NFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKN   62 (90)
T ss_dssp             SEEEETTEEEEEECCBHHHHHHCEEEEEECSSSCEEEEEESSCCCTTCEEECTTCSCBCSSC
T ss_pred             CCeEeCCeEEEEEEeCHHHHhcCCeEEEecccccceecccccccccccccccCCCCCCcCCC
Confidence            49999999999999999999999999999999999999999999999999999999998754

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.8e-18  Score=126.82  Aligned_cols=67  Identities=27%  Similarity=0.476  Sum_probs=59.3

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhcccccc
Q 038604            3 FDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEE   73 (315)
Q Consensus         3 ~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~   73 (315)
                      +++|+||+|+.+||.+|||+|||+|+++||||++++ +...+.++|++|++||++|+   ++..||++...
T Consensus        16 ~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~-~~~~a~~~f~~i~~Ay~~L~---~~~~~d~~~~~   82 (88)
T d1iura_          16 KEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPE-NHDIANEVFKHLQNEINRLE---KQAFLDQNADR   82 (88)
T ss_dssp             HHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSS-CHHHHHHHHHHHHHHHHHHH---HHTTCSSSSSC
T ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccc-hhhHHHHHHHHHHHHHHHHH---HHHHhhccchH
Confidence            589999999999999999999999999999999987 45678999999999999996   56777765543

>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=8.3e-17  Score=117.30  Aligned_cols=62  Identities=37%  Similarity=0.677  Sum_probs=57.3

Q ss_pred             CeeecCCCeEEEEeeCHHHHHcCCeEEEecCCCcEEEEecCC--CcCCCcEEEEcCCCcCCCCC
Q 038604          253 LYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTD--IVKPGTEIVVPNEGMPISKE  314 (315)
Q Consensus       253 ~f~R~g~dL~~~~~Isl~eal~G~~~~i~tldG~~~~i~i~~--~~~~g~~~~i~g~G~P~~~~  314 (315)
                      .|+|+|+||+++++|+++||++|++++|+|+||+.+.|+|+.  .+++|++++|+|+|||..++
T Consensus         1 tF~R~G~dL~~~~~I~~~eal~G~~~~i~~~dg~~~~i~i~~~~~~~~g~~~~i~g~G~p~~~~   64 (80)
T d1nlta2           1 SFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKY   64 (80)
T ss_dssp             SCEEETTEEEEEEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCSTTCEEEETTCSCBCSSS
T ss_pred             CcEEeCCEEEEEEEeCHHHHhCCCEEEEEecCcceEEEEeCCCCCcCCCCEEEecCCCCCCCCc
Confidence            499999999999999999999999999999999988888865  49999999999999998764

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.65  E-value=1.7e-17  Score=125.29  Aligned_cols=65  Identities=17%  Similarity=0.410  Sum_probs=58.6

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc-hhHHHHHHHHHHHHHHhcCChhhhhhh
Q 038604            3 FDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHK-RTEAEAKFKQISEAYDVLSDPQKRQIY   67 (315)
Q Consensus         3 ~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~y   67 (315)
                      .+.|++|||...++.++||+|||++++++|||++++.. ...+.+.|+.|++||++|+||.+|+.|
T Consensus        33 ~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~R~~Y   98 (98)
T d1nz6a_          33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY   98 (98)
T ss_dssp             CCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             ccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence            46899999999999999999999999999999987532 345788999999999999999999988

>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.27  E-value=1.7e-12  Score=96.13  Aligned_cols=80  Identities=18%  Similarity=0.177  Sum_probs=68.7

Q ss_pred             cccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCC--CCCCCcEE
Q 038604          166 FKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEP--GIIAADLI  243 (315)
Q Consensus       166 ~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~--g~~~GDL~  243 (315)
                      .|++.|+++.++|||.||+.|++++|...      +|      ++++|+||+|+++|++++++|+|.+..  .+..|||+
T Consensus         3 ~R~G~DL~~~~~I~~~eal~G~~~~i~~~------dG------~~i~i~ip~~~~~g~~~~i~g~G~p~~~~~~~rGdL~   70 (90)
T d1c3ga2           3 KRDGDDLIYTLPLSFKESLLGFSKTIQTI------DG------RTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLI   70 (90)
T ss_dssp             EEETTEEEEEECCBHHHHHHCEEEEEECS------SS------CEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEE
T ss_pred             eEeCCeEEEEEEeCHHHHhcCCeEEEecc------cc------cceecccccccccccccccCCCCCCcCCCCCCcCCEE
Confidence            36788999999999999999999998765      67      488999999999999999999999743  34579999


Q ss_pred             EEEEecCCCCeeec
Q 038604          244 FIVDEKPHALYRRD  257 (315)
Q Consensus       244 v~i~v~~h~~f~R~  257 (315)
                      |++.+.-+..++.+
T Consensus        71 V~~~v~~P~~ls~~   84 (90)
T d1c3ga2          71 VKYKVDYPISLNDA   84 (90)
T ss_dssp             EEECCBCCSSCCTT
T ss_pred             EEEEEEcCCCCCHH
Confidence            99999977655543

>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.18  E-value=2.5e-11  Score=87.67  Aligned_cols=74  Identities=20%  Similarity=0.161  Sum_probs=63.5

Q ss_pred             cccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCC--CCCCCEEEecCCCCCCC-CCCCCcE
Q 038604          166 FKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPG--WKKGTKITFPEKGNQEP-GIIAADL  242 (315)
Q Consensus       166 ~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G--~~~G~~i~~~g~G~~~~-g~~~GDL  242 (315)
                      .|++.||+++++|+|.||+.|++++|...      +|      ..++|.||++  +++|++++++|+|.+.. ++..|||
T Consensus         3 ~R~G~dL~~~~~I~~~eal~G~~~~i~~~------dg------~~~~i~i~~~~~~~~g~~~~i~g~G~p~~~~~~~GDL   70 (80)
T d1nlta2           3 KRDGDDLVYEAEIDLLTAIAGGEFALEHV------SG------DWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNL   70 (80)
T ss_dssp             EEETTEEEEEEEEEHHHHHHCBCCEEECS------SS------CEEECCBCTTTTCSTTCEEEETTCSCBCSSSCSBCCE
T ss_pred             EEeCCEEEEEEEeCHHHHhCCCEEEEEec------Cc------ceEEEEeCCCCCcCCCCEEEecCCCCCCCCcCCcCcE
Confidence            36788999999999999999999999865      67      4788888877  99999999999999753 3568999


Q ss_pred             EEEEEecCC
Q 038604          243 IFIVDEKPH  251 (315)
Q Consensus       243 ~v~i~v~~h  251 (315)
                      +|+++|.-+
T Consensus        71 ~v~~~V~~P   79 (80)
T d1nlta2          71 IIKFTIKDP   79 (80)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEEcC
Confidence            999999754

>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.88  E-value=8.3e-10  Score=78.20  Aligned_cols=57  Identities=23%  Similarity=0.262  Sum_probs=52.0

Q ss_pred             ecCCCeEEEEeeCHHHHHcCCeEEEecCCCcEEEEecCCCcCCCcEEEEcCCCcCCCC
Q 038604          256 RDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPISK  313 (315)
Q Consensus       256 R~g~dL~~~~~Isl~eal~G~~~~i~tldG~~~~i~i~~~~~~g~~~~i~g~G~P~~~  313 (315)
                      |+|.||.++++|||.||++|+++.|.+. .+++.|+||+++++|++++++|+|.+..+
T Consensus         2 rkg~di~~~l~isleea~~G~~~~~~~~-~~~~~i~Ip~G~~~G~~ir~~g~G~~~~~   58 (74)
T d1nlta1           2 QRGKDIKHEISASLEELYKGRTAKLALN-RKILEVHVEPGMKDGQRIVFKGEADQAPD   58 (74)
T ss_dssp             CBCCCEEEEEEECTTHHHHCEEEEEEEE-EEEEEEEECTTCCTTCEEEETTCSCCCTT
T ss_pred             CCCCCEEEEEEecHHHHHhhcccceeec-CccEEEEecccccCCeEEEecCCcCCCCC
Confidence            6799999999999999999999999974 45699999999999999999999988654

>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.98  E-value=6.4e-06  Score=58.37  Aligned_cols=54  Identities=24%  Similarity=0.285  Sum_probs=45.7

Q ss_pred             CCeEEEEeeCHHHHHcCCeEEEe----cCCCc----EEEEecCCCcCCCcEEEEcCCCcCCC
Q 038604          259 NDLVVGQEITLLEALTGKTLDLT----TLDGR----NLMIPLTDIVKPGTEIVVPNEGMPIS  312 (315)
Q Consensus       259 ~dL~~~~~Isl~eal~G~~~~i~----tldG~----~~~i~i~~~~~~g~~~~i~g~G~P~~  312 (315)
                      +||.+.++|||.||..|++..|.    ..+|.    ++.|.||+++++|++++++|+|....
T Consensus         1 e~v~~~l~vtLee~~~G~~k~i~~~r~~~~g~~~~~~~~v~Ip~G~~~G~~i~~~g~G~~~~   62 (80)
T d1c3ga1           1 ETVQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNP   62 (80)
T ss_dssp             CEEEEEEEECHHHHHHTCEEEEEEEEEETTTEEEEEEEEEECCTTCCTTCEEEESSCSSBCS
T ss_pred             CCEEEEeEEEHHHHhCCCceEeecceecccCCCceEEEEEEECCCCCCCcEEEECCccccCc
Confidence            47899999999999999976664    34553    58899999999999999999998654