Citrus Sinensis ID: 038619

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
MKLEPLAMNPISQMGKPEKVIRLTPHSDGSTLTILLQVCEVEGLQIKKDGKWTSVSPLRNAFIVNIGDMFEVLTISINQWELPSASQERISISTFYKARYEEHPASSLISEETPALFRRVTVEEYLRGR
cccEEEEEcccccccccccccccccccccccEEEEEEcccccEEEEEEccEEEEccccccEEEEEcccEEEEEEccEEEEEEccccccEEEEEEcccccccccccccccccccccccccccHHHHHccc
cccEEEEEccccccccccHEcccccccccccEEEEEcccccccEEEEEcccEEEccccccEEEEEcccHHHHHEccEEEEEEEEccccEEEEEEEEcccccccccHHHcccccccccccccHHHHHccc
mkleplamnpisqmgkpekvirltphsdgstLTILLQVCEVEglqikkdgkwtsvsplrnAFIVNIGDMFEVLTISInqwelpsasqerISISTFYKAryeehpassliseetpaLFRRVTVEEYLRGR
mkleplamnpisqmgkpeKVIRLTPHSDGSTLTILLQVCEVEGLqikkdgkwtsvspLRNAFIVNIGDMFEVLTISINqwelpsasqERISISTFYKARYEEHpassliseetpalfrrVTVEEYLRGR
MKLEPLAMNPISQMGKPEKVIRLTPHSDGSTLTILLQVCEVEGLQIKKDGKWTSVSPLRNAFIVNIGDMFEVLTISINQWELPSASQERISISTFYKARYEEHPASSLISEETPALFRRVTVEEYLRGR
****************************GSTLTILLQVCEVEGLQIKKDGKWTSVSPLRNAFIVNIGDMFEVLTISINQWELPSASQERISISTFYKARY***************LFRRVT********
***EPLAMNPISQMGKPEKVIRLTPHSDGSTLTILLQVCEVEGLQIKKDGKWTSVSPLRNAFIVNIGDMFEVLTISINQWELPSASQERISISTFYKARYEEHPASSLISEETPALFRRVTVEEYLRG*
MKLEPLAMNPISQMGKPEKVIRLTPHSDGSTLTILLQVCEVEGLQIKKDGKWTSVSPLRNAFIVNIGDMFEVLTISINQWELPSASQERISISTFYKARYEEHPASSLISEETPALFRRVTVEEYLRGR
**LEPLAMNPISQMGKPEKVIRLTPHSDGSTLTILLQVCEVEGLQIKKDGKWTSVSPLRNAFIVNIGDMFEVLTISINQWELPSASQERISISTFYKARYEEHPASSLISEETPALFRRVTVEEYLRGR
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKLEPLAMNPISQMGKPEKVIRLTPHSDGSTLTILLQVCEVEGLQIKKDGKWTSVSPLRNAFIVNIGDMFEVLTISINQWELPSASQERISISTFYKARYEEHPASSLISEETPALFRRVTVEEYLRGR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query129 2.2.26 [Sep-21-2011]
Q39224358 Protein SRG1 OS=Arabidops no no 0.976 0.351 0.477 1e-25
D4N502360 Codeine O-demethylase OS= N/A no 0.968 0.347 0.458 8e-25
D4N501364 Probable 2-oxoglutarate/F N/A no 0.875 0.310 0.495 2e-24
D4N500364 Thebaine 6-O-demethylase N/A no 0.891 0.315 0.471 8e-23
A2A1A0352 S-norcoclaurine synthase N/A no 0.798 0.292 0.390 1e-15
Q9LTH8364 1-aminocyclopropane-1-car no no 0.868 0.307 0.360 2e-14
Q9LTH7366 1-aminocyclopropane-1-car no no 0.844 0.297 0.352 3e-14
P93821345 1-aminocyclopropane-1-car no no 0.868 0.324 0.360 6e-14
Q84MB3365 1-aminocyclopropane-1-car no no 0.860 0.304 0.347 8e-14
Q9LSW6362 1-aminocyclopropane-1-car no no 0.868 0.309 0.311 3e-13
>sp|Q39224|SRG1_ARATH Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1 Back     alignment and function desciption
 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/132 (47%), Positives = 89/132 (67%), Gaps = 6/132 (4%)

Query: 3   LEPLAMNPISQMGKPEKVIRLTPHSDGSTLTILLQVCEVEGLQIKKDGKWTSVSPLRNAF 62
           ++ + MN      +P++VI LTPHSD   LT+L+QV +VEGLQIKKDGKW  V PL NAF
Sbjct: 210 VQSMRMNYYPPCPQPDQVIGLTPHSDSVGLTVLMQVNDVEGLQIKKDGKWVPVKPLPNAF 269

Query: 63  IVNIGDMFEVLTI----SINQWELPSASQERISISTFYK-ARYEE-HPASSLISEETPAL 116
           IVNIGD+ E++T     SI    + ++ +ER+SI+TF+    Y+E  PA SL+  +  A 
Sbjct: 270 IVNIGDVLEIITNGTYRSIEHRGVVNSEKERLSIATFHNVGMYKEVGPAKSLVERQKVAR 329

Query: 117 FRRVTVEEYLRG 128
           F+R+T++EY  G
Sbjct: 330 FKRLTMKEYNDG 341

Arabidopsis thaliana (taxid: 3702)
>sp|D4N502|DIOX3_PAPSO Codeine O-demethylase OS=Papaver somniferum GN=CODM PE=1 SV=1 Back     alignment and function description
>sp|D4N501|DIOX2_PAPSO Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1 Back     alignment and function description
>sp|D4N500|DIOX1_PAPSO Thebaine 6-O-demethylase OS=Papaver somniferum GN=T6ODM PE=1 SV=1 Back     alignment and function description
>sp|A2A1A0|NCS1_COPJA S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LTH8|ACH11_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 11 OS=Arabidopsis thaliana GN=At5g59530 PE=2 SV=1 Back     alignment and function description
>sp|Q9LTH7|ACH12_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 12 OS=Arabidopsis thaliana GN=At5g59540 PE=2 SV=1 Back     alignment and function description
>sp|P93821|ACCH7_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 7 OS=Arabidopsis thaliana GN=At1g04380 PE=1 SV=1 Back     alignment and function description
>sp|Q84MB3|ACCH1_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1 Back     alignment and function description
>sp|Q9LSW6|ACH10_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 10 OS=Arabidopsis thaliana GN=At5g43450 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query129
255575141 364 Leucoanthocyanidin dioxygenase, putative 0.937 0.332 0.559 4e-30
224148314151 predicted protein [Populus trichocarpa] 0.953 0.814 0.496 9e-29
224061381 359 predicted protein [Populus trichocarpa] 0.953 0.342 0.496 1e-28
224061385 355 predicted protein [Populus trichocarpa] 0.976 0.354 0.507 3e-28
255575133 317 Naringenin,2-oxoglutarate 3-dioxygenase, 0.868 0.353 0.550 3e-28
363807040 358 uncharacterized protein LOC100777264 [Gl 0.976 0.351 0.484 2e-27
388515455206 unknown [Medicago truncatula] 0.953 0.597 0.488 5e-27
356499964 354 PREDICTED: protein SRG1-like [Glycine ma 0.953 0.347 0.496 1e-26
225453297 364 PREDICTED: protein SRG1 [Vitis vinifera] 0.968 0.343 0.511 2e-26
297734657 316 unnamed protein product [Vitis vinifera] 0.968 0.395 0.511 2e-26
>gi|255575141|ref|XP_002528475.1| Leucoanthocyanidin dioxygenase, putative [Ricinus communis] gi|223532084|gb|EEF33892.1| Leucoanthocyanidin dioxygenase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 71/127 (55%), Positives = 92/127 (72%), Gaps = 6/127 (4%)

Query: 8   MNPISQMGKPEKVIRLTPHSDGSTLTILLQVCEVEGLQIKKDGKWTSVSPLRNAFIVNIG 67
           MN      +PEKVI LTPHSDG+ LTILLQV +VEGLQIKKDGKW  V PL NAF++NIG
Sbjct: 216 MNYYPPCPQPEKVIGLTPHSDGTGLTILLQVNDVEGLQIKKDGKWVPVKPLPNAFVINIG 275

Query: 68  DMFEVLTISINQWELPSAS----QERISISTFYKARY--EEHPASSLISEETPALFRRVT 121
           D+ E++T  I +  L  A+    Q+R+SI++F+  RY  E  PA SLI+ +TP+ FRRVT
Sbjct: 276 DILEIITNGIYRSILHRATVNSQQKRLSIASFHSPRYDGEIFPAPSLITAQTPSRFRRVT 335

Query: 122 VEEYLRG 128
           V+E+ +G
Sbjct: 336 VQEFFKG 342

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224148314|ref|XP_002336631.1| predicted protein [Populus trichocarpa] gi|222836386|gb|EEE74793.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224061381|ref|XP_002300451.1| predicted protein [Populus trichocarpa] gi|222847709|gb|EEE85256.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224061385|ref|XP_002300453.1| predicted protein [Populus trichocarpa] gi|222847711|gb|EEE85258.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255575133|ref|XP_002528471.1| Naringenin,2-oxoglutarate 3-dioxygenase, putative [Ricinus communis] gi|223532080|gb|EEF33888.1| Naringenin,2-oxoglutarate 3-dioxygenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|363807040|ref|NP_001242069.1| uncharacterized protein LOC100777264 [Glycine max] gi|255645137|gb|ACU23067.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|388515455|gb|AFK45789.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|356499964|ref|XP_003518805.1| PREDICTED: protein SRG1-like [Glycine max] Back     alignment and taxonomy information
>gi|225453297|ref|XP_002268288.1| PREDICTED: protein SRG1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297734657|emb|CBI16708.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query129
TAIR|locus:2020407358 SRG1 "senescence-related gene 0.976 0.351 0.477 2.2e-25
TAIR|locus:2122679353 AT4G25310 [Arabidopsis thalian 0.953 0.348 0.472 4.6e-25
TAIR|locus:2122669356 AT4G25300 [Arabidopsis thalian 0.953 0.345 0.449 3.8e-23
TAIR|locus:2020422361 AT1G17010 [Arabidopsis thalian 0.976 0.349 0.439 1e-22
TAIR|locus:2202980356 AT1G78550 [Arabidopsis thalian 0.852 0.308 0.439 3e-21
TAIR|locus:2127686348 AT4G10490 [Arabidopsis thalian 0.922 0.341 0.406 1.6e-17
TAIR|locus:2089428364 LBO1 "LATERAL BRANCHING OXIDOR 0.953 0.337 0.389 7.4e-17
TAIR|locus:2169697371 AT5G05600 [Arabidopsis thalian 0.930 0.323 0.357 1.4e-15
TAIR|locus:2010242348 AT1G49390 [Arabidopsis thalian 0.821 0.304 0.366 1.8e-15
TAIR|locus:2154744349 AT5G54000 [Arabidopsis thalian 0.844 0.312 0.382 1.8e-15
TAIR|locus:2020407 SRG1 "senescence-related gene 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 63/132 (47%), Positives = 89/132 (67%)

Query:     3 LEPLAMNPISQMGKPEKVIRLTPHSDGSTLTILLQVCEVEGLQIKKDGKWTSVSPLRNAF 62
             ++ + MN      +P++VI LTPHSD   LT+L+QV +VEGLQIKKDGKW  V PL NAF
Sbjct:   210 VQSMRMNYYPPCPQPDQVIGLTPHSDSVGLTVLMQVNDVEGLQIKKDGKWVPVKPLPNAF 269

Query:    63 IVNIGDMFEVLTI----SINQWELPSASQERISISTFYKA-RYEE-HPASSLISEETPAL 116
             IVNIGD+ E++T     SI    + ++ +ER+SI+TF+    Y+E  PA SL+  +  A 
Sbjct:   270 IVNIGDVLEIITNGTYRSIEHRGVVNSEKERLSIATFHNVGMYKEVGPAKSLVERQKVAR 329

Query:   117 FRRVTVEEYLRG 128
             F+R+T++EY  G
Sbjct:   330 FKRLTMKEYNDG 341
GO:0005737 "cytoplasm" evidence=ISM
GO:0009813 "flavonoid biosynthetic process" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009737 "response to abscisic acid stimulus" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0009830 "cell wall modification involved in abscission" evidence=RCA
GO:0009845 "seed germination" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010260 "organ senescence" evidence=IEP;RCA
GO:0016682 "oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor" evidence=ISS
TAIR|locus:2122679 AT4G25310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122669 AT4G25300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020422 AT1G17010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202980 AT1G78550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127686 AT4G10490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089428 LBO1 "LATERAL BRANCHING OXIDOREDUCTASE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169697 AT5G05600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010242 AT1G49390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154744 AT5G54000 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query129
PLN02216357 PLN02216, PLN02216, protein SRG1 7e-36
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 2e-25
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 1e-23
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 2e-19
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 4e-19
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 6e-19
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 7e-19
PLN02947374 PLN02947, PLN02947, oxidoreductase 6e-18
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 3e-17
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 7e-16
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 3e-15
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 1e-14
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 4e-14
PLN02904357 PLN02904, PLN02904, oxidoreductase 3e-13
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 1e-12
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 3e-12
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 1e-11
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 4e-10
PLN02485329 PLN02485, PLN02485, oxidoreductase 1e-09
PLN02704335 PLN02704, PLN02704, flavonol synthase 2e-08
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 2e-08
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 2e-07
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 3e-07
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 4e-06
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 1e-05
PLN02997325 PLN02997, PLN02997, flavonol synthase 2e-04
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information 
 Score =  125 bits (316), Expect = 7e-36
 Identities = 61/127 (48%), Positives = 83/127 (65%), Gaps = 6/127 (4%)

Query: 8   MNPISQMGKPEKVIRLTPHSDGSTLTILLQVCEVEGLQIKKDGKWTSVSPLRNAFIVNIG 67
           MN      +P++VI LTPHSD   LTILLQV EVEGLQIKKDGKW SV PL NA +VN+G
Sbjct: 214 MNYYPPCPQPDQVIGLTPHSDAVGLTILLQVNEVEGLQIKKDGKWVSVKPLPNALVVNVG 273

Query: 68  DMFEVLT----ISINQWELPSASQERISISTFYKARYEEH--PASSLISEETPALFRRVT 121
           D+ E++T     SI    + ++ +ER+S++TF+     +   PA SL+  +  ALF+ +T
Sbjct: 274 DILEIITNGTYRSIEHRGVVNSEKERLSVATFHNTGMGKEIGPAKSLVERQKAALFKSLT 333

Query: 122 VEEYLRG 128
            +EY  G
Sbjct: 334 TKEYFDG 340

Length = 357
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 129
PLN02216357 protein SRG1 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02947374 oxidoreductase 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02997325 flavonol synthase 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02704335 flavonol synthase 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02904357 oxidoreductase 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02485329 oxidoreductase 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.93
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 97.37
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 94.72
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 94.36
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 94.03
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 92.34
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 91.11
PF13759101 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB 87.7
TIGR02466201 conserved hypothetical protein. This family consis 84.66
>PLN02216 protein SRG1 Back     alignment and domain information 
Probab=100.00  E-value=1.5e-43  Score=286.77  Aligned_cols=126  Identities=48%  Similarity=0.766  Sum_probs=120.1

Q ss_pred             CceEEeeecCCCCCCCCccccccccCCCCeeEEeeCCCcceeEEEeCCeeEEecCCCCeeEeecccceecccCC----cc
Q 038619            3 LEPLAMNPISQMGKPEKVIRLTPHSDGSTLTILLQVCEVEGLQIKKDGKWTSVSPLRNAFIVNIGDMFEVLTIS----IN   78 (129)
Q Consensus         3 ~~~lrl~~Ypp~~~~~~~~g~~~HtD~~~lTll~qd~~~~GLqv~~~g~W~~v~~~~~~~vvn~Gd~l~~~tng----~~   78 (129)
                      .+.||++|||||++++..+|+++|||+|+||||+||++++||||+++|+|++|+|.+|++|||+||+||+||||    ++
T Consensus       209 ~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTlL~q~~~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~L~~~TNG~~kS~~  288 (357)
T PLN02216        209 GQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTILLQVNEVEGLQIKKDGKWVSVKPLPNALVVNVGDILEIITNGTYRSIE  288 (357)
T ss_pred             hheeEEeecCCCCCcccccCccCcccCceEEEEEecCCCCceeEEECCEEEECCCCCCeEEEEcchhhHhhcCCeeeccC
Confidence            35899999999998888999999999999999999656999999999999999999999999999999999999    99


Q ss_pred             eeecCCCCCCCceeEeeeeCC--eEEecCCcccCCCCCCCCccccHHHHhhc
Q 038619           79 QWELPSASQERISISTFYKAR--YEEHPASSLISEETPALFRRVTVEEYLRG  128 (129)
Q Consensus        79 HRV~~~~~~~R~S~~~f~~p~--~~i~pl~~~~~~~~~~~y~~~~~~dyl~~  128 (129)
                      |||+.++.++|||++||+.|+  ++|+|+++++++++|++|++++++||++.
T Consensus       289 HRVv~~~~~~R~Si~~F~~P~~d~~i~p~~~lv~~~~p~~Y~~~t~~ey~~~  340 (357)
T PLN02216        289 HRGVVNSEKERLSVATFHNTGMGKEIGPAKSLVERQKAALFKSLTTKEYFDG  340 (357)
T ss_pred             ceeecCCCCCEEEEEEEecCCCCCeEeCcHHHcCCCCCCCCCCcCHHHHHHH
Confidence            999988888999999999999  99999999999999999999999999864

>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query129
1w9y_A319 The Structure Of Acc Oxidase Length = 319 3e-12
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 1e-06
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 1e-06
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 6e-06
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 8e-06
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure 
Iteration: 1

 Score = 67.0 bits (162), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 9/121 (7%)
Query: 16  KPEKVIRLTPHSDGSTLTILLQVCEVEGLQIKKDGKWTSVSPLRNAFIVNIGDMFEVLT- 74
           KP+ +  L  H+D   + +L Q  +V GLQ+ KDG+W  V P R++ +VN+GD  EV+T 
Sbjct: 167 KPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITN 226
Query: 75  ---ISINQWELPSASQERISISTFYKARYEE--HPASSLI---SEETPALFRRVTVEEYL 126
               S+    +      R S+++FY    +   +PA +L+   +EE   ++ +   ++Y 
Sbjct: 227 GKYKSVXHRVIAQKDGARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYX 286
Query: 127 R 127
           +
Sbjct: 287 K 287
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query129
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 4e-39
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 9e-39
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 2e-31
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 3e-27
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 6e-24
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 2e-22
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
 Score =  132 bits (334), Expect = 4e-39
 Identities = 36/124 (29%), Positives = 68/124 (54%), Gaps = 15/124 (12%)

Query: 16  KPEKVIRLTPHSDGSTLTILLQVCEVEGLQIKKDGKWTSVSPLRNAFIVNIGDMFEVLT- 74
           KP+ +  L  H+D   + +L Q  +V GLQ+ KDG+W  V P+R++ +VN+GD  EV+T 
Sbjct: 167 KPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVVNLGDQLEVITN 226

Query: 75  ---ISINQWE---LPSASQERISISTFYKARYEE--HPASSLI---SEETPALFRRVTVE 123
               S+       +      R+S+++FY    +   +PA +L+   +EE   ++ +   +
Sbjct: 227 GKYKSV---MHRVIAQKDGARMSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFD 283

Query: 124 EYLR 127
           +Y++
Sbjct: 284 DYMK 287
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query129
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 94.5
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 93.7
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 93.68
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 93.62
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 93.57
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 93.52
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 88.71
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 88.39
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 86.75
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
Probab=100.00  E-value=1.2e-43  Score=282.09  Aligned_cols=127  Identities=27%  Similarity=0.516  Sum_probs=116.0

Q ss_pred             CceEEeeecCCCCCCCCccccccccCCCCeeEEeeCCCcceeEEEeCCeeEEecCCCCeeEeecccceecccCC----cc
Q 038619            3 LEPLAMNPISQMGKPEKVIRLTPHSDGSTLTILLQVCEVEGLQIKKDGKWTSVSPLRNAFIVNIGDMFEVLTIS----IN   78 (129)
Q Consensus         3 ~~~lrl~~Ypp~~~~~~~~g~~~HtD~~~lTll~qd~~~~GLqv~~~g~W~~v~~~~~~~vvn~Gd~l~~~tng----~~   78 (129)
                      .+.||++|||||++++..+|+++|||+|+||||+||++++||||.++|+|++|+|.+|++|||+||+||+||||    +.
T Consensus       154 ~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~qd~~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~l~~~SnG~~kS~~  233 (319)
T 1w9y_A          154 NFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVM  233 (319)
T ss_dssp             EEEEEEEECCCCSCGGGGSSCCCBCCSSSEEEEEESSSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCC
T ss_pred             cceeEEEecCCCcccccccccccccCCCceEEEEecCCCCeeeEeeCCeEEEcccCCCcEEEEhHHHHHHHhCCeeeccc
Confidence            35799999999998888899999999999999999656999999999999999999999999999999999999    99


Q ss_pred             eeecCCCCCCCceeEeeeeCC--eEEecCCcccCCC---CCCCCccccHHHHhhcC
Q 038619           79 QWELPSASQERISISTFYKAR--YEEHPASSLISEE---TPALFRRVTVEEYLRGR  129 (129)
Q Consensus        79 HRV~~~~~~~R~S~~~f~~p~--~~i~pl~~~~~~~---~~~~y~~~~~~dyl~~~  129 (129)
                      |||+.+++++|+|++||+.|+  ++|+|++++++++   +|++|++++++||++.+
T Consensus       234 HRVv~~~~~~R~Sia~F~~p~~d~~i~pl~~l~~~~~~~~p~~Y~~~t~~ey~~~~  289 (319)
T 1w9y_A          234 HRVIAQKDGARMSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYMKLY  289 (319)
T ss_dssp             EEECCCSSSCCEEEEEEEECCTTCEECCCGGGC--------CCCCCEEHHHHHHTT
T ss_pred             ceecCCCCCCceEEEEEecCCCCCeEeCchhhcCcccccCccccCcEeHHHHHHHH
Confidence            999999889999999999999  9999999999987   59999999999999753
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 129
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 7e-19
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 5e-15
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 4e-11
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 3e-07
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 78.5 bits (192), Expect = 7e-19
 Identities = 34/131 (25%), Positives = 66/131 (50%), Gaps = 8/131 (6%)

Query: 6   LAMNPISQMGKPEKVIRLTPHSDGSTLTILLQVCEVEGLQIKKDGKWTSVSPLRNAFIVN 65
           + +N   +  +PE  + +  H+D S LT  +    V GLQ+  +GKW +   + ++ +++
Sbjct: 211 MKINYYPKCPQPELALGVEAHTDVSALT-FILHNMVPGLQLFYEGKWVTAKCVPDSIVMH 269

Query: 66  IGDMFEVLT----ISINQWELPSASQERISISTFYKARYEE---HPASSLISEETPALFR 118
           IGD  E+L+     SI    L +  + RIS + F +   ++    P   ++S E+PA F 
Sbjct: 270 IGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFP 329

Query: 119 RVTVEEYLRGR 129
             T  +++  +
Sbjct: 330 PRTFAQHIEHK 340
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query129
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 95.51
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 90.31
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: 1-aminocyclopropane-1-carboxylate oxidase 1
species: Petunia hybrida [TaxId: 4102]

Probab=100.00  E-value=4.5e-43  Score=273.46  Aligned_cols=127  Identities=28%  Similarity=0.522  Sum_probs=116.2

Q ss_pred             CceEEeeecCCCCCCCCccccccccCCCCeeEEeeCCCcceeEEEeCCeeEEecCCCCeeEeecccceecccCC----cc
Q 038619            3 LEPLAMNPISQMGKPEKVIRLTPHSDGSTLTILLQVCEVEGLQIKKDGKWTSVSPLRNAFIVNIGDMFEVLTIS----IN   78 (129)
Q Consensus         3 ~~~lrl~~Ypp~~~~~~~~g~~~HtD~~~lTll~qd~~~~GLqv~~~g~W~~v~~~~~~~vvn~Gd~l~~~tng----~~   78 (129)
                      .+.+|++||||++.++...|+++|||+|+||||+||+..+|||+.++|+|++|+|.+|++|||+||+||+||||    +.
T Consensus       153 ~~~lr~~~YP~~~~~~~~~g~~~HtD~~~lTlL~q~~~~ggl~~~~~g~Wi~v~p~~~~~vVnvGD~l~~~Tng~~kSt~  232 (307)
T d1w9ya1         153 NFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVM  232 (307)
T ss_dssp             EEEEEEEECCCCSCGGGGSSCCCBCCSSSEEEEEESSSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCC
T ss_pred             cccceecCCCCCcccccccccccccccceeEEeeccCCCCeEEEecCCcEEEeccCCCeEEEEcchhhHHhhCCcccCcC
Confidence            45789999999998888899999999999999999767899999999999999999999999999999999999    99


Q ss_pred             eeecCCCCCCCceeEeeeeCC--eEEecCCcccC---CCCCCCCccccHHHHhhcC
Q 038619           79 QWELPSASQERISISTFYKAR--YEEHPASSLIS---EETPALFRRVTVEEYLRGR  129 (129)
Q Consensus        79 HRV~~~~~~~R~S~~~f~~p~--~~i~pl~~~~~---~~~~~~y~~~~~~dyl~~~  129 (129)
                      |||+.+++++|||++||+.|+  ++|+|++++++   +++|++|++++++||++.+
T Consensus       233 HRVv~~~~~~R~Si~~F~~p~~d~~i~p~~~~v~~~~~~~p~~y~~~t~~ey~~~~  288 (307)
T d1w9ya1         233 HRVIAQKDGARMSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYMKLY  288 (307)
T ss_dssp             EEECCCSSSCCEEEEEEEECCTTCEECCCGGGC--------CCCCCEEHHHHHHTT
T ss_pred             ceeecCCCCCcEEEEEEeeCCCCCEEeCCHHHhcccCccCCCCCCCeeHHHHHHHH
Confidence            999999889999999999999  99999999986   4578999999999999864
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure