Citrus Sinensis ID: 038622
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 587 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LFF1 | 754 | Pentatricopeptide repeat- | yes | no | 0.993 | 0.773 | 0.793 | 0.0 | |
| Q9LPX2 | 644 | Pentatricopeptide repeat- | no | no | 0.906 | 0.826 | 0.339 | 6e-90 | |
| Q3EDF8 | 598 | Pentatricopeptide repeat- | no | no | 0.831 | 0.816 | 0.333 | 1e-88 | |
| Q9FMF6 | 730 | Pentatricopeptide repeat- | no | no | 0.834 | 0.671 | 0.326 | 1e-87 | |
| Q9LQ16 | 632 | Pentatricopeptide repeat- | no | no | 0.829 | 0.770 | 0.346 | 4e-86 | |
| Q9CAN0 | 630 | Pentatricopeptide repeat- | no | no | 0.868 | 0.809 | 0.348 | 5e-86 | |
| Q9LQ14 | 629 | Pentatricopeptide repeat- | no | no | 0.882 | 0.823 | 0.344 | 1e-85 | |
| Q9CAN6 | 590 | Pentatricopeptide repeat- | no | no | 0.860 | 0.855 | 0.358 | 5e-85 | |
| Q9CAN5 | 614 | Pentatricopeptide repeat- | no | no | 0.812 | 0.776 | 0.345 | 4e-84 | |
| Q6NQ83 | 619 | Pentatricopeptide repeat- | no | no | 0.862 | 0.817 | 0.337 | 3e-83 |
| >sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 996 bits (2574), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/585 (79%), Positives = 535/585 (91%), Gaps = 2/585 (0%)
Query: 1 LKLVETAHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTT 60
LKLVE +HA M GIKPDVSTFN+LIKALC+AHQ+RPAILM+E+MP YGL PDE+TFTT
Sbjct: 170 LKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTT 229
Query: 61 LMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSE- 119
+MQG IEEG+LDGALRIREQMVE GC +NV+VNV+VHGFCKEGR+EDAL+FIQEM ++
Sbjct: 230 VMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQD 289
Query: 120 GFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEA 179
GF PDQ+T+NTLVNGLCK GHVK A+E+MD+MLQEG+DPDV+TYNS+ISGLCKLGEV+EA
Sbjct: 290 GFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEA 349
Query: 180 VEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQG 239
VE+L+QMI RDCSPNT+TYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQG
Sbjct: 350 VEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQG 409
Query: 240 LCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARN 299
LCLT N VAMELF+EM++KGC+PDEFTYNMLIDSLCS+G L+EAL +LK+ME SGCAR+
Sbjct: 410 LCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARS 469
Query: 300 VVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMD 359
V+TYNTLIDGFCK + EAEEIFDEME+ G+SRNSVTYNTLIDGLCKSRRVEDAAQLMD
Sbjct: 470 VITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMD 529
Query: 360 QMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAG 419
QMIMEG KPDK+TYNSLLT++CR GDIK+AADIVQ MTSNGCEPDIVTYGTLI GLCKAG
Sbjct: 530 QMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAG 589
Query: 420 RVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKAD-PPDALTY 478
RVEVASKLLRSIQMKGI LTP AYNPVIQ LFR+++TTEA+ LFREM+E+ + PPDA++Y
Sbjct: 590 RVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSY 649
Query: 479 KHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVM 538
+ VFRGLCNGGGPI EAVDF++E+LE+GF+PEFSS YMLAEGL++L EETLV+L++MVM
Sbjct: 650 RIVFRGLCNGGGPIREAVDFLVELLEKGFVPEFSSLYMLAEGLLTLSMEETLVKLVNMVM 709
Query: 539 DKAKFSDRETSMVRGFLKIRKFQDALATFGDILDSRMPRKTFRSR 583
KA+FS+ E SMV+G LKIRKFQDALAT G +LDSR PR+T+RSR
Sbjct: 710 QKARFSEEEVSMVKGLLKIRKFQDALATLGGVLDSRQPRRTYRSR 754
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May be involved in female gametophyte development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 332 bits (850), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 181/533 (33%), Positives = 293/533 (54%), Gaps = 1/533 (0%)
Query: 2 KLVETAHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTL 61
+LV M S+GI + T +I+I C+ ++ A M ++ G PD F TL
Sbjct: 105 ELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTL 164
Query: 62 MQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGF 121
+ GL E + AL + ++MVE G T +T+N LV+G C G++ DA+ I MV GF
Sbjct: 165 LNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGF 224
Query: 122 NPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVE 181
P++ TY ++N +CK G A+E++ M + D Y+ +I GLCK G ++ A
Sbjct: 225 QPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFN 284
Query: 182 ILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLC 241
+ N+M ++ + ITYNTLI C + ++ +L R + + I P+V TF+ LI
Sbjct: 285 LFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFV 344
Query: 242 LTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVV 301
A +L +EM +G P+ TYN LID C LEEA++++ M S GC +++
Sbjct: 345 KEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIM 404
Query: 302 TYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQM 361
T+N LI+G+CK RI++ E+F EM ++G+ N+VTYNTL+ G C+S ++E A +L +M
Sbjct: 405 TFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEM 464
Query: 362 IMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRV 421
+ ++PD +Y LL C G++++A +I + + E DI Y +I G+C A +V
Sbjct: 465 VSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKV 524
Query: 422 EVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHV 481
+ A L S+ +KG+ L +AYN +I L R+ ++A LFR+M E+ PD LTY +
Sbjct: 525 DDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNIL 584
Query: 482 FRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELI 534
R G A + + EM GF + S+ M+ L S +++ ++++
Sbjct: 585 IRAHL-GDDDATTAAELIEEMKSSGFPADVSTVKMVINMLSSGELDKSFLDML 636
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 328 bits (840), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 164/492 (33%), Positives = 277/492 (56%), Gaps = 4/492 (0%)
Query: 62 MQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGF 121
++ ++ G L+ + E MV HG + + L+ GFC+ G+ A ++ + G
Sbjct: 109 LRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGA 168
Query: 122 NPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVE 181
PD TYN +++G CK G + AL V+D M PDV TYN+++ LC G++++A+E
Sbjct: 169 VPDVITYNVMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAME 225
Query: 182 ILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLC 241
+L++M+ RDC P+ ITY LI C+++ V A +L + +G PDV T+N L+ G+C
Sbjct: 226 VLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGIC 285
Query: 242 LTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVV 301
D A++ +M + GCQP+ T+N+++ S+CS G +A KLL +M G + +VV
Sbjct: 286 KEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVV 345
Query: 302 TYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQM 361
T+N LI+ C+ + A +I ++M G NS++YN L+ G CK ++++ A + +++M
Sbjct: 346 TFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERM 405
Query: 362 IMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRV 421
+ G PD TYN++LT C+ G ++ A +I+ ++S GC P ++TY T+I GL KAG+
Sbjct: 406 VSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKT 465
Query: 422 EVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHV 481
A KLL ++ K + Y+ ++ L R + EA++ F E P+A+T+ +
Sbjct: 466 GKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSI 525
Query: 482 FRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKA 541
GLC A+DF++ M+ RG P +S+ +L EGL G + +EL++ + +K
Sbjct: 526 MLGLCKSR-QTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKG 584
Query: 542 KFSDRETSMVRG 553
V G
Sbjct: 585 LMKKSSAEQVAG 596
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 324 bits (831), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 183/561 (32%), Positives = 286/561 (50%), Gaps = 71/561 (12%)
Query: 2 KLVETAHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTL 61
K+ DM+SR I P + TF +++KA C ++I A+ ++ +M +G P+ + TL
Sbjct: 199 KVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTL 258
Query: 62 MQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGF 121
+ L + ++ AL++ E+M GC+ T N ++ G CK RI +A + M+ GF
Sbjct: 259 IHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGF 318
Query: 122 NPDQFTYNTLVNGLCKVGHVKQALEVM--------------------------------D 149
PD TY L+NGLCK+G V A ++ D
Sbjct: 319 APDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSD 378
Query: 150 MMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKEN 209
M+ G PDV TYNSLI G K G V A+E+L+ M + C PN +Y L+ CK
Sbjct: 379 MVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLG 438
Query: 210 QVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYN 269
+++EA + +++ G+ P+ FN LI C A+E+F+EM KGC+PD +T+N
Sbjct: 439 KIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFN 498
Query: 270 MLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQ 329
LI LC ++ AL LL++M S G N VTYNTLI+ F + I+EA ++ +EM Q
Sbjct: 499 SLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQ 558
Query: 330 GISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRA 389
G + +TYN+LI GLC++ V+ A L ++M+ +G P + N L+ CR+G ++ A
Sbjct: 559 GSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEA 618
Query: 390 ADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQA 449
+ + M G PDIVT+ +LI GLC+AGR+E + R +Q +GI
Sbjct: 619 VEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGI------------- 665
Query: 450 LFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP 509
PPD +T+ + LC GG + +A + E +E GF+P
Sbjct: 666 ----------------------PPDTVTFNTLMSWLCKGGF-VYDACLLLDEGIEDGFVP 702
Query: 510 EFSSFYMLAEGLVSLGKEETL 530
++ +L + ++ +ETL
Sbjct: 703 NHRTWSILLQSIIP---QETL 720
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 319 bits (817), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 169/488 (34%), Positives = 265/488 (54%)
Query: 1 LKLVETAHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTT 60
L L A M+ G +PD+ T + L+ C + +I A+ ++++M G PD TFTT
Sbjct: 134 LSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTT 193
Query: 61 LMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEG 120
L+ GL A+ + +QMV+ GC VT +V+G CK G I+ ALS +++M
Sbjct: 194 LIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGK 253
Query: 121 FNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAV 180
D YNT+++GLCK H+ AL + M +G PDVFTY+SLIS LC G +A
Sbjct: 254 IEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDAS 313
Query: 181 EILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGL 240
+L+ MI R +PN +T++ LI KE ++ EA +L + + I PD+ T++SLI G
Sbjct: 314 RLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGF 373
Query: 241 CLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNV 300
C+ D A +F+ M +K C P+ TY+ LI C +EE ++L +EM G N
Sbjct: 374 CMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNT 433
Query: 301 VTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQ 360
VTY TLI GF + + + A+ +F +M G+ N +TYN L+DGLCK+ ++ A + +
Sbjct: 434 VTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEY 493
Query: 361 MIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGR 420
+ ++PD +TYN ++ C+AG ++ ++ N++ G P+++ Y T+I G C+ G
Sbjct: 494 LQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGS 553
Query: 421 VEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKH 480
E A LL+ ++ G + YN +I+A R + L +EM DA T
Sbjct: 554 KEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGL 613
Query: 481 VFRGLCNG 488
V L +G
Sbjct: 614 VTNMLHDG 621
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 319 bits (817), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 178/511 (34%), Positives = 271/511 (53%), Gaps = 1/511 (0%)
Query: 3 LVETAHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLM 62
LV + M + GI ++ T++ILI C+ Q+ A+ ++ +M G PD T +L+
Sbjct: 99 LVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLL 158
Query: 63 QGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFN 122
G + A+ + QMVE G + T N L+HG + R +A++ + MV +G
Sbjct: 159 NGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQ 218
Query: 123 PDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEI 182
PD TY +VNGLCK G + AL ++ M Q +P V YN++I LC V +A+ +
Sbjct: 219 PDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNL 278
Query: 183 LNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCL 242
+M + PN +TYN+LI LC + +A+ L + + I P+V TF++LI
Sbjct: 279 FTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVK 338
Query: 243 TSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVT 302
A +L+ EM + PD FTY+ LI+ C L+EA + + M S C NVVT
Sbjct: 339 EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVT 398
Query: 303 YNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMI 362
YNTLI GFCK KR++E E+F EM +G+ N+VTY TLI G ++R ++A + QM+
Sbjct: 399 YNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMV 458
Query: 363 MEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVE 422
+G+ PD TY+ LL C G ++ A + + + + EPDI TY +I G+CKAG+VE
Sbjct: 459 SDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVE 518
Query: 423 VASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVF 482
L S+ +KG+ Y ++ R+ EA LFREM E+ PD+ TY +
Sbjct: 519 DGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLI 578
Query: 483 RGLCNGGGPIGEAVDFVIEMLERGFLPEFSS 513
R G A + + EM F+ + S+
Sbjct: 579 RAHLRDGDKAASA-ELIREMRSCRFVGDAST 608
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 317 bits (812), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 179/519 (34%), Positives = 277/519 (53%), Gaps = 1/519 (0%)
Query: 16 IKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGAL 75
I D+ ++NILI C+ Q+ A+ ++ +M G PD T ++L+ G + A+
Sbjct: 111 ISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAV 170
Query: 76 RIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGL 135
+ +QM VT N L+HG + +A++ I MV+ G PD FTY T+VNGL
Sbjct: 171 ALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGL 230
Query: 136 CKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNT 195
CK G + AL ++ M + + DV Y ++I LC V +A+ + +M + PN
Sbjct: 231 CKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNV 290
Query: 196 ITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQE 255
+TYN+LI LC + +A+ L + + I P+V TF++LI A +L+ E
Sbjct: 291 VTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDE 350
Query: 256 MKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKR 315
M + PD FTY+ LI+ C L+EA + + M S C NVVTYNTLI GFCK KR
Sbjct: 351 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKR 410
Query: 316 IEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNS 375
+EE E+F EM +G+ N+VTYNTLI GL ++ + A ++ +M+ +G+ PD TY+
Sbjct: 411 VEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSI 470
Query: 376 LLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKG 435
LL C+ G +++A + + + + EPDI TY +I G+CKAG+VE L S+ +KG
Sbjct: 471 LLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKG 530
Query: 436 IVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEA 495
+ Y +I R+ EA LFREM E P++ TY + R G A
Sbjct: 531 VKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASA 590
Query: 496 VDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELI 534
+ + EM GF+ + S+ M+ L E++ +E++
Sbjct: 591 -ELIKEMRSCGFVGDASTISMVINMLHDGRLEKSYLEML 628
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070, mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 315 bits (808), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 182/507 (35%), Positives = 277/507 (54%), Gaps = 2/507 (0%)
Query: 9 ADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEE 68
DMV P + F+ L+ A+ K ++ I + E+M G++ + T++ +
Sbjct: 64 GDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRR 123
Query: 69 GNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTY 128
L AL I +M++ G + VT+N L++GFC RI +A++ + +MV G+ PD T+
Sbjct: 124 SQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTF 183
Query: 129 NTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMIL 188
TLV+GL + +A+ +++ M+ +G PD+ TY ++I+GLCK GE + A+ +LN+M
Sbjct: 184 TTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEK 243
Query: 189 RDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDV 248
+ + YNT+I LCK +++A +L + +KGI PDV T+N LI LC +
Sbjct: 244 GKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSD 303
Query: 249 AMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEM-ESSGCARNVVTYNTLI 307
A L +M K PD +N LID+ G L EA KL EM +S C +VV YNTLI
Sbjct: 304 ASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLI 363
Query: 308 DGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLK 367
GFCK KR+EE E+F EM +G+ N+VTY TLI G ++R ++A + QM+ +G+
Sbjct: 364 KGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVH 423
Query: 368 PDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKL 427
PD TYN LL C G+++ A + + M + DIVTY T+I LCKAG+VE L
Sbjct: 424 PDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDL 483
Query: 428 LRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCN 487
S+ +KG+ Y ++ R+ EA LF EM E P++ TY + R
Sbjct: 484 FCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLR 543
Query: 488 GGGPIGEAVDFVIEMLERGFLPEFSSF 514
G A + + EM GF + S+F
Sbjct: 544 DGDEAASA-ELIKEMRSCGFAGDASTF 569
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 312 bits (800), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 165/478 (34%), Positives = 258/478 (53%)
Query: 11 MVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGN 70
M+ G P + T N L+ C ++I A+ ++++M G PD TFTTL+ GL +
Sbjct: 126 MMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNK 185
Query: 71 LDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNT 130
A+ + E+MV GC VT +++G CK G + AL+ + +M D Y+T
Sbjct: 186 ASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYST 245
Query: 131 LVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRD 190
+++ LCK HV AL + M +G PDVFTY+SLIS LC G +A +L+ M+ R
Sbjct: 246 VIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERK 305
Query: 191 CSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAM 250
+PN +T+N+LI KE ++ EA +L + + I P++ T+NSLI G C+ D A
Sbjct: 306 INPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQ 365
Query: 251 ELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGF 310
++F M +K C PD TYN LI+ C + + ++L ++M G N VTY TLI GF
Sbjct: 366 QIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGF 425
Query: 311 CKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDK 370
+ + A+ +F +M G+ N +TYNTL+DGLCK+ ++E A + + + ++PD
Sbjct: 426 FQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDI 485
Query: 371 FTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRS 430
+TYN + C+AG ++ D+ +++ G +PD++ Y T+I G CK G E A L
Sbjct: 486 YTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIK 545
Query: 431 IQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNG 488
++ G + YN +I+A R + L +EM DA TY V L +G
Sbjct: 546 MKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTYGLVTDMLHDG 603
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 310 bits (793), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 171/507 (33%), Positives = 274/507 (54%), Gaps = 1/507 (0%)
Query: 15 GIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGA 74
GI+ D+ T I+I C+ ++ A ++ G PD TF+TL+ G EG + A
Sbjct: 100 GIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEA 159
Query: 75 LRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNG 134
+ + ++MVE VTV+ L++G C +GR+ +AL I MV GF PD+ TY ++N
Sbjct: 160 VALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNR 219
Query: 135 LCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPN 194
LCK G+ AL++ M + V Y+ +I LCK G ++A+ + N+M ++ +
Sbjct: 220 LCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKAD 279
Query: 195 TITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQ 254
+TY++LI LC + + ++ ++ R + + I+PDV TF++LI A EL+
Sbjct: 280 VVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYN 339
Query: 255 EMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLK 314
EM T+G PD TYN LID C L EA ++ M S GC ++VTY+ LI+ +CK K
Sbjct: 340 EMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAK 399
Query: 315 RIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYN 374
R+++ +F E+ +G+ N++TYNTL+ G C+S ++ A +L +M+ G+ P TY
Sbjct: 400 RVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYG 459
Query: 375 SLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMK 434
LL C G++ +A +I + M + I Y +I G+C A +V+ A L S+ K
Sbjct: 460 ILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDK 519
Query: 435 GIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGE 494
G+ YN +I L ++ +EA LFR+M E PD TY + R G G I
Sbjct: 520 GVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLI-S 578
Query: 495 AVDFVIEMLERGFLPEFSSFYMLAEGL 521
+V+ + EM GF + S+ M+ + L
Sbjct: 579 SVELIEEMKVCGFSADSSTIKMVIDML 605
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 587 | ||||||
| 225439731 | 772 | PREDICTED: pentatricopeptide repeat-cont | 0.848 | 0.645 | 0.817 | 0.0 | |
| 15231863 | 754 | pentatricopeptide repeat-containing prot | 0.993 | 0.773 | 0.793 | 0.0 | |
| 297816676 | 754 | hypothetical protein ARALYDRAFT_906766 [ | 0.993 | 0.773 | 0.794 | 0.0 | |
| 449448914 | 768 | PREDICTED: pentatricopeptide repeat-cont | 0.926 | 0.708 | 0.783 | 0.0 | |
| 224078588 | 757 | predicted protein [Populus trichocarpa] | 0.989 | 0.767 | 0.805 | 0.0 | |
| 358346916 | 718 | Pentatricopeptide repeat-containing prot | 0.919 | 0.752 | 0.740 | 0.0 | |
| 356548144 | 756 | PREDICTED: pentatricopeptide repeat-cont | 0.981 | 0.761 | 0.754 | 0.0 | |
| 346703131 | 746 | hypothetical_protein [Oryza brachyantha] | 0.989 | 0.778 | 0.616 | 0.0 | |
| 242033891 | 758 | hypothetical protein SORBIDRAFT_01g01656 | 0.976 | 0.755 | 0.607 | 0.0 | |
| 293330959 | 756 | uncharacterized protein LOC100383543 [Ze | 0.977 | 0.759 | 0.605 | 0.0 |
| >gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700, chloroplastic [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 999 bits (2583), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/580 (81%), Positives = 531/580 (91%)
Query: 1 LKLVETAHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTT 60
LKLVE ++ MVSRGIKPDV+TFNILIKALC+AHQIRPAILMMEEM YGL+PDE+TFTT
Sbjct: 192 LKLVEIVNSRMVSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTT 251
Query: 61 LMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEG 120
LMQG IEEGN++GALRIREQMV GC +NVTVNVLVHG+CKEGRIE+ LSFI EM +EG
Sbjct: 252 LMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEG 311
Query: 121 FNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAV 180
F PD+FT+N+LVNGLC++GHVK ALE++D+MLQEGFDPD+FTYNSLI GLCKLGEVEEAV
Sbjct: 312 FRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAV 371
Query: 181 EILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGL 240
EILNQMILRD SPNT+TYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGL
Sbjct: 372 EILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGL 431
Query: 241 CLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNV 300
CLT+N +AMELF+EMKTKGC PDEFTYNMLIDSLCSRG LEEAL LLKEMESSGC+RNV
Sbjct: 432 CLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNV 491
Query: 301 VTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQ 360
VTYNTLIDGFCK KRIEEAEEIFDEME+QGISRN VTYNTLIDGLCK+RRVE+AAQLMDQ
Sbjct: 492 VTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQ 551
Query: 361 MIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGR 420
M+MEGLKPDKFTYNSLLTY+CRAGDIK+AADIVQ MTSNGCEPD VTYGTLI GL KAGR
Sbjct: 552 MLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGR 611
Query: 421 VEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKH 480
VE+AS+LLR++Q+KG+VL PQ YNPVI+ALFR KRT+EA+RLFREMMEK DPPDA+TYK
Sbjct: 612 VELASRLLRTVQLKGMVLAPQTYNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYKV 671
Query: 481 VFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDK 540
VFRGLC+GGGPIGEAVDF++EM ++GFLP+FSSF MLAEGL +L E+TL++L++ VM +
Sbjct: 672 VFRGLCSGGGPIGEAVDFLVEMTDKGFLPDFSSFLMLAEGLCALSMEDTLIKLVNRVMKQ 731
Query: 541 AKFSDRETSMVRGFLKIRKFQDALATFGDILDSRMPRKTF 580
A FSD E SM+ GFLKIRKFQDALAT G IL SR P+K F
Sbjct: 732 ANFSDSEVSMIMGFLKIRKFQDALATLGRILSSREPKKAF 771
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g53700, chloroplastic; AltName: Full=Protein MATERNAL EFFECT EMBRYO ARREST 40; Flags: Precursor gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana] gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana] gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 996 bits (2574), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/585 (79%), Positives = 535/585 (91%), Gaps = 2/585 (0%)
Query: 1 LKLVETAHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTT 60
LKLVE +HA M GIKPDVSTFN+LIKALC+AHQ+RPAILM+E+MP YGL PDE+TFTT
Sbjct: 170 LKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTT 229
Query: 61 LMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSE- 119
+MQG IEEG+LDGALRIREQMVE GC +NV+VNV+VHGFCKEGR+EDAL+FIQEM ++
Sbjct: 230 VMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQD 289
Query: 120 GFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEA 179
GF PDQ+T+NTLVNGLCK GHVK A+E+MD+MLQEG+DPDV+TYNS+ISGLCKLGEV+EA
Sbjct: 290 GFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEA 349
Query: 180 VEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQG 239
VE+L+QMI RDCSPNT+TYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQG
Sbjct: 350 VEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQG 409
Query: 240 LCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARN 299
LCLT N VAMELF+EM++KGC+PDEFTYNMLIDSLCS+G L+EAL +LK+ME SGCAR+
Sbjct: 410 LCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARS 469
Query: 300 VVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMD 359
V+TYNTLIDGFCK + EAEEIFDEME+ G+SRNSVTYNTLIDGLCKSRRVEDAAQLMD
Sbjct: 470 VITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMD 529
Query: 360 QMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAG 419
QMIMEG KPDK+TYNSLLT++CR GDIK+AADIVQ MTSNGCEPDIVTYGTLI GLCKAG
Sbjct: 530 QMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAG 589
Query: 420 RVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKAD-PPDALTY 478
RVEVASKLLRSIQMKGI LTP AYNPVIQ LFR+++TTEA+ LFREM+E+ + PPDA++Y
Sbjct: 590 RVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSY 649
Query: 479 KHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVM 538
+ VFRGLCNGGGPI EAVDF++E+LE+GF+PEFSS YMLAEGL++L EETLV+L++MVM
Sbjct: 650 RIVFRGLCNGGGPIREAVDFLVELLEKGFVPEFSSLYMLAEGLLTLSMEETLVKLVNMVM 709
Query: 539 DKAKFSDRETSMVRGFLKIRKFQDALATFGDILDSRMPRKTFRSR 583
KA+FS+ E SMV+G LKIRKFQDALAT G +LDSR PR+T+RSR
Sbjct: 710 QKARFSEEEVSMVKGLLKIRKFQDALATLGGVLDSRQPRRTYRSR 754
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp. lyrata] gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 995 bits (2572), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/585 (79%), Positives = 534/585 (91%), Gaps = 2/585 (0%)
Query: 1 LKLVETAHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTT 60
LKLVE AHA M GIKPDVSTFN+LIKALC+AHQ+RPAILM+E+MP YGL PDE+TFTT
Sbjct: 170 LKLVEIAHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTT 229
Query: 61 LMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSE- 119
+MQG IEEG+LDGALRIREQMVE GC +NV+VNV+VHGFCKEGR+EDAL+FIQEM ++
Sbjct: 230 IMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQD 289
Query: 120 GFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEA 179
GF PDQ+T+NTLVNGLCK GHVK A+E+MD+MLQEG+DPDV+TYNS+ISGLCKLGEV+EA
Sbjct: 290 GFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEA 349
Query: 180 VEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQG 239
VE L+QMI RDCSPNT+TYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQG
Sbjct: 350 VEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQG 409
Query: 240 LCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARN 299
LCLT N VAMELF+EM++KGC+PDEFTYNMLIDSLCS+G L+EAL +LK+ME SGCAR+
Sbjct: 410 LCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARS 469
Query: 300 VVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMD 359
V+TYNTLIDGFCK +I EAEEIFDEME+ G+SRNSVTYNTLIDGLCKSRRVEDA+QLMD
Sbjct: 470 VITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMD 529
Query: 360 QMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAG 419
QMIMEG KPDKFTYNSLLT++CR GDIK+AADIVQ MTSNGCEPDIVTYGTLI GLCKAG
Sbjct: 530 QMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAG 589
Query: 420 RVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKAD-PPDALTY 478
RVEVASKLLRSIQMKGI LTP AYNPVIQ LFR+++TTEA+ LFREM+E+ + PDA++Y
Sbjct: 590 RVEVASKLLRSIQMKGIALTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAAPDAVSY 649
Query: 479 KHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVM 538
+ VFRGLCNGGGPI EAVDF++E+LE+GF+PEFSS YMLAEGL++L EETLV+L++MVM
Sbjct: 650 RIVFRGLCNGGGPIREAVDFLVELLEKGFVPEFSSLYMLAEGLLTLSMEETLVKLVNMVM 709
Query: 539 DKAKFSDRETSMVRGFLKIRKFQDALATFGDILDSRMPRKTFRSR 583
KA+FS+ E SMV+G LKIRKFQDALAT G +LDSR PR+T+RSR
Sbjct: 710 QKARFSEEEVSMVKGLLKIRKFQDALATLGGVLDSRQPRRTYRSR 754
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700, chloroplastic-like [Cucumis sativus] gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 978 bits (2527), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/583 (78%), Positives = 527/583 (90%)
Query: 1 LKLVETAHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTT 60
LKLVE+AH+ MV R I+ DVSTFNILIKALCKAHQ+RPAILMMEEMP YGL+PDE TFTT
Sbjct: 184 LKLVESAHSSMVRRRIRHDVSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTT 243
Query: 61 LMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEG 120
+MQG IE GNLDGALRI+EQMVE+GC T+VTVNVL++GFCK+GRI+ ALSFIQE VSEG
Sbjct: 244 IMQGYIEGGNLDGALRIKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEG 303
Query: 121 FNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAV 180
F PDQFTYNTLVNGLCK+GH K A+EV+D ML G DPD++TYNSLISGLCKLGE+EEAV
Sbjct: 304 FRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAV 363
Query: 181 EILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGL 240
+IL+QM+ RDCSPN +TYN +IS+LCKEN+V+EATE+AR+LTSKGILPDVCTFNSLIQGL
Sbjct: 364 KILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGL 423
Query: 241 CLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNV 300
CL+SN AM+LF+EMK KGC+PDEFTYNMLIDSLCS LEEAL LLKEME +GCARNV
Sbjct: 424 CLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNV 483
Query: 301 VTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQ 360
V YNTLIDGFCK KRIEEAEEIFDEME+QG+SR+SVTYNTLIDGLCKS+RVEDAAQLMDQ
Sbjct: 484 VIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQ 543
Query: 361 MIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGR 420
MIMEGL+PDKFTYNSLLT++C+ GDIK+AADIVQ MTS+GC PDIVTY TLI GLCKAGR
Sbjct: 544 MIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGR 603
Query: 421 VEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKH 480
V+VAS+LLRSIQMKG+VLTP AYNPVIQALF+R RT EAMRLFREM++K++PPDA+TYK
Sbjct: 604 VQVASRLLRSIQMKGMVLTPHAYNPVIQALFKRNRTHEAMRLFREMLDKSEPPDAITYKI 663
Query: 481 VFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDK 540
V+RGLCNGGGPIGEAVDF +EM+ERG +PEFSSF MLAEGL +L ++TLV+L+DM+M+K
Sbjct: 664 VYRGLCNGGGPIGEAVDFTVEMIERGNIPEFSSFVMLAEGLCTLSMDDTLVKLVDMIMEK 723
Query: 541 AKFSDRETSMVRGFLKIRKFQDALATFGDILDSRMPRKTFRSR 583
AKFS+RE S +RGFLKIRKFQDAL+T G ILD PR+++R R
Sbjct: 724 AKFSEREISTIRGFLKIRKFQDALSTLGGILDDMYPRRSYRGR 766
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa] gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 972 bits (2513), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/582 (80%), Positives = 531/582 (91%), Gaps = 1/582 (0%)
Query: 1 LKLVETAHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTT 60
LKLVE AH++MVSRGI+PDVSTFNILIKALC+AHQIRPAIL+MEEM +GL PDE+TFTT
Sbjct: 176 LKLVEIAHSNMVSRGIRPDVSTFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTT 235
Query: 61 LMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEM-VSE 119
+MQG IEEGNLDGA+R++EQMVE GC+VTNVTVNVLV+GFCKEGRIE+AL FI+EM + E
Sbjct: 236 IMQGFIEEGNLDGAMRVKEQMVEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLRE 295
Query: 120 GFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEA 179
GF PD++T+N LVNGL K GHVK ALEVMDMML+EGFDPD++TYNSLISGLCKLGEV+EA
Sbjct: 296 GFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEA 355
Query: 180 VEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQG 239
V++LNQMI RDCSPNT+TYNT+ISTLCKENQVEEAT+LA VLT KGILPDVCT+NSLIQG
Sbjct: 356 VKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQG 415
Query: 240 LCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARN 299
LCL+ N VAMEL++EMKTKGC PDEFTYNMLIDSLC RG L+EAL LLKEME SGCARN
Sbjct: 416 LCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARN 475
Query: 300 VVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMD 359
V+TYNTLIDGFCK KRI EAEEIFD+ME+QG+SRNSVTYNTLIDGLCKS RVE+A+QLMD
Sbjct: 476 VITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMD 535
Query: 360 QMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAG 419
QMIMEGL+PDKFTYNSLLTY+C+AGDIK+AADIVQ M S+GCEPDIVTYGTLI GLCKAG
Sbjct: 536 QMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAG 595
Query: 420 RVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYK 479
RVE A+KLLR+IQMKGI LTP AYNPVIQALFRRKR+ EA+RLFREM+EKA+ PDA+TYK
Sbjct: 596 RVEAATKLLRTIQMKGINLTPHAYNPVIQALFRRKRSKEAVRLFREMIEKAEAPDAVTYK 655
Query: 480 HVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMD 539
VFRGLC GGGPIGEAVDFV+EMLERG++PEFSSFYMLAEGL SL TL++LIDMVM+
Sbjct: 656 IVFRGLCQGGGPIGEAVDFVMEMLERGYVPEFSSFYMLAEGLFSLAMVGTLIKLIDMVME 715
Query: 540 KAKFSDRETSMVRGFLKIRKFQDALATFGDILDSRMPRKTFR 581
KAKFSD E +M+RGFLKI K+QDALAT G ILDSR P + +R
Sbjct: 716 KAKFSDNEVTMIRGFLKISKYQDALATLGGILDSRKPNRAYR 757
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 922 bits (2383), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/578 (74%), Positives = 512/578 (88%)
Query: 1 LKLVETAHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTT 60
LKLVE H+ MV+ GI DVSTFN+LIKALCKAHQ+RPAILM+EEM +GL PDE TFTT
Sbjct: 139 LKLVEMLHSKMVNEGIVLDVSTFNVLIKALCKAHQLRPAILMLEEMANHGLKPDEITFTT 198
Query: 61 LMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEG 120
LMQG IEEG+L+GAL++++QM+ +GCL+TNV+V VLV+GFCKEGR+E+AL F+ E+ EG
Sbjct: 199 LMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNGFCKEGRVEEALRFVLEVSEEG 258
Query: 121 FNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAV 180
F+PDQ T+N+LVNG C++G+V AL+++D M+++GFDPDV+TYNSLISG+CKLGE E+A+
Sbjct: 259 FSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAI 318
Query: 181 EILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGL 240
EIL QMILR+CSPNT+TYNTLIS LCKEN++E AT+LAR+L SKG+LPDVCTFN+LIQGL
Sbjct: 319 EILQQMILRECSPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGL 378
Query: 241 CLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNV 300
CL+ N D+AME+F+EMK KGC+PDEFTY++LIDSLC L+EAL LLKEMESSGCARN
Sbjct: 379 CLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNA 438
Query: 301 VTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQ 360
V YNTLIDG CK +RIE+AEEIFD+ME+ G+SR+SVTYNTLIDGLCK++RVE+A+QLMDQ
Sbjct: 439 VVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQ 498
Query: 361 MIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGR 420
MIMEGLKPDKFTYNSLLTY+CR GDI++A DIVQ M SNGCEPDI TYGTLIGGLC+AGR
Sbjct: 499 MIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGR 558
Query: 421 VEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKH 480
V+VASKLLRS+QMKGIVLTP AYNPVIQALF RKRT E MRLFREMMEK+DPPDALT+K
Sbjct: 559 VDVASKLLRSVQMKGIVLTPHAYNPVIQALFMRKRTKEGMRLFREMMEKSDPPDALTHKI 618
Query: 481 VFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDK 540
VFRGLCNGGGPI EA+DF +EMLE+G LPEF SF LAEGL SL E+TL+ELI+MVM+K
Sbjct: 619 VFRGLCNGGGPIQEAIDFTVEMLEKGILPEFPSFGFLAEGLCSLSMEDTLIELINMVMEK 678
Query: 541 AKFSDRETSMVRGFLKIRKFQDALATFGDILDSRMPRK 578
A+ S+RETSM+RGFLKIRKF DALA G ILD + P++
Sbjct: 679 AQMSERETSMIRGFLKIRKFNDALANLGGILDRQNPKR 716
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 920 bits (2377), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/578 (75%), Positives = 506/578 (87%), Gaps = 2/578 (0%)
Query: 1 LKLVETAHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTT 60
LKLVET H+ MV+ + PDVSTFNILI+ALCKAHQ+RPAILM+E+MP YGL PDE+TFTT
Sbjct: 180 LKLVETLHSKMVADAVPPDVSTFNILIRALCKAHQLRPAILMLEDMPNYGLRPDEKTFTT 239
Query: 61 LMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEG 120
LMQG IEE +++GALRI+E MVE GC +T+V+VNVLV+G CKEGRIE+AL FI E EG
Sbjct: 240 LMQGFIEEADVEGALRIKELMVESGCELTSVSVNVLVNGLCKEGRIEEALRFIYE--EEG 297
Query: 121 FNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAV 180
F PDQ T+N LVNGLC+ GH+KQ LE+MD ML++GF+ DV+TYNSLISGLCKLGE++EAV
Sbjct: 298 FCPDQVTFNALVNGLCRTGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAV 357
Query: 181 EILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGL 240
EIL+ M+ RDC PNT+TYNTLI TLCKEN VE ATELARVLTSKG+LPDVCTFNSLIQGL
Sbjct: 358 EILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGL 417
Query: 241 CLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNV 300
CLTSN ++AMELF+EMK KGC PDEFTY++LI+SLCS L+EAL LLKEME SGCARNV
Sbjct: 418 CLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNV 477
Query: 301 VTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQ 360
V YNTLIDG CK R+ +AE+IFD+ME+ G+SR+SVTYNTLI+GLCKS+RVE+AAQLMDQ
Sbjct: 478 VVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQ 537
Query: 361 MIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGR 420
MIMEGLKPDKFTY ++L Y+C+ GDIKRAADIVQNMT NGCEPDIVTYGTLIGGLCKAGR
Sbjct: 538 MIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAGR 597
Query: 421 VEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKH 480
V+VASKLLRS+QMKG+VLTPQAYNPVIQAL +RKRT EAMRLFREMMEK DPPD +TYK
Sbjct: 598 VDVASKLLRSVQMKGMVLTPQAYNPVIQALCKRKRTKEAMRLFREMMEKGDPPDVITYKI 657
Query: 481 VFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDK 540
VFRGLCNGGGPI EAVDF +EMLE+G LPEF SF LAEGL SL E+TL++LI+MVM+K
Sbjct: 658 VFRGLCNGGGPIQEAVDFTVEMLEKGILPEFPSFGFLAEGLCSLSMEDTLIQLINMVMEK 717
Query: 541 AKFSDRETSMVRGFLKIRKFQDALATFGDILDSRMPRK 578
+FS ETS++RGFLKI+KF DALA G ILD + PR+
Sbjct: 718 GRFSQSETSIIRGFLKIQKFNDALANLGAILDRKKPRR 755
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha] | Back alignment and taxonomy information |
|---|
Score = 770 bits (1989), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/581 (61%), Positives = 463/581 (79%)
Query: 1 LKLVETAHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTT 60
+KL+ET +++M RGIKPDV TFN L+KALC+AHQ+R A+LM+EEM G+APDE TFTT
Sbjct: 166 MKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTT 225
Query: 61 LMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEG 120
LMQG +EEG++ ALR++ +M+E GC T VTVNVL++G+CK GR+EDAL +IQ+ ++ G
Sbjct: 226 LMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEIANG 285
Query: 121 FNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAV 180
F PDQ TYNT VNGLC+ GHV AL+VMD+M+QEG DPDVFTYN +++ LCK G++EEA
Sbjct: 286 FEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAK 345
Query: 181 EILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGL 240
ILNQM+ R C P+ T+NTLI LC N++EEA +LAR +T KG+ PDV TFN LI L
Sbjct: 346 GILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINAL 405
Query: 241 CLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNV 300
C + +A+ LF+EMK+ GC PDE TYN LID+LCS G L +AL LLKEMES+GC R+
Sbjct: 406 CKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRST 465
Query: 301 VTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQ 360
VTYNT+IDG CK RIEEAEE+FD+M++QGISRN++T+NTLIDGLCK +R++DA QL+ Q
Sbjct: 466 VTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQ 525
Query: 361 MIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGR 420
MI EGL+P+ TYNS+LT+YC+ GDIK+AADI+Q MT+NG E D+VTYGTLI GLCKAGR
Sbjct: 526 MISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGR 585
Query: 421 VEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKH 480
+VA KLLR +++KG+ TP+AYNPVIQ+LFRR T +AM LFREM E +PPDA TYK
Sbjct: 586 TQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLFREMTEVGEPPDAFTYKI 645
Query: 481 VFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDK 540
VFRGLC GGG I EA DF++EM+++GF+PEFSSF MLAEGL++LG ++ + I+++++K
Sbjct: 646 VFRGLCRGGGSIREAFDFLLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYFIRAIEIIIEK 705
Query: 541 AKFSDRETSMVRGFLKIRKFQDALATFGDILDSRMPRKTFR 581
A D + S +RG+LKIRKF DALATFG +L P+ ++R
Sbjct: 706 ADLGDSDVSAIRGYLKIRKFYDALATFGRLLKINNPQWSYR 746
|
Source: Oryza brachyantha Species: Oryza brachyantha Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor] gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 765 bits (1976), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/581 (60%), Positives = 465/581 (80%)
Query: 1 LKLVETAHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTT 60
LKL+E+ + +M RGI+PDV T N LIKALC+AHQ+R A+LM+EEM +G+APDE TFTT
Sbjct: 178 LKLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTT 237
Query: 61 LMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEG 120
LMQG IEEG+++ ALR++ +M+E GC T VTVNVL++G+CK GR+EDAL +IQ+ +++G
Sbjct: 238 LMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADG 297
Query: 121 FNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAV 180
F PDQ TYNT V+GLC+ GHV AL+VMD+MLQEG DPDVFTYN++I+ L K GE++EA
Sbjct: 298 FEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAK 357
Query: 181 EILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGL 240
I+NQM+ R C P+T T+NTLI L +N++EEA +LAR LT KG+ PDV TFN LI L
Sbjct: 358 GIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINAL 417
Query: 241 CLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNV 300
C + + + LF+EMK+ GC PDE TYN+LID LCS G L AL LL EMES+GC R+
Sbjct: 418 CKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRST 477
Query: 301 VTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQ 360
VTYNT+ID CK RIEEAEE+FD+M+ QGISR++VT+NTLIDGLCK++R++DA +L++Q
Sbjct: 478 VTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQ 537
Query: 361 MIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGR 420
M+ EGL+P+ TYNS+LT+YC+ G+IK+AADI++ MT+NG E D+VTYGTLI GLCKAGR
Sbjct: 538 MVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCKAGR 597
Query: 421 VEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKH 480
+VA KLLR +++KGI TP+AYNPVIQ+LFRR +A+ LFREM E +PPDALTYK
Sbjct: 598 TQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFREMTEVGEPPDALTYKI 657
Query: 481 VFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDK 540
VFR LC GGGPI EA DF++EM+ +GF+PEFSSF MLAEGL++LG ++ L+ I+++++K
Sbjct: 658 VFRSLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEGLLNLGMDDYLISAIELIIEK 717
Query: 541 AKFSDRETSMVRGFLKIRKFQDALATFGDILDSRMPRKTFR 581
AKF + + S +RG+LKIRK+ DALATFG +L+ P+ T+R
Sbjct: 718 AKFRESDASAIRGYLKIRKYYDALATFGRLLEINNPQWTYR 758
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays] gi|224030695|gb|ACN34423.1| unknown [Zea mays] gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 763 bits (1970), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/581 (60%), Positives = 464/581 (79%)
Query: 1 LKLVETAHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTT 60
+KL+E+ + +M RGI+PDV T N LIKALC+AHQ+R A+LM+EEM + +APDE TFTT
Sbjct: 176 MKLLESVYNEMTDRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTT 235
Query: 61 LMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEG 120
LMQG IEEG+++ ALR++ +M+E GC T VTVNVL++G+CK GR+EDAL +IQ+ +++G
Sbjct: 236 LMQGFIEEGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGYIQKEIADG 295
Query: 121 FNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAV 180
F PDQ TYNT V+ LC+ GHV AL+VMD+MLQEG DPDVFTYN++I+ L K GE++EA
Sbjct: 296 FEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAK 355
Query: 181 EILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGL 240
I+NQM+ R C P+T T+NTLI LC +N++EEA +LAR LT KG+ PDV TFN LI L
Sbjct: 356 GIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINAL 415
Query: 241 CLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNV 300
C + + + LF+EMK+ GC PDE TYN+LID LCS G L AL LLKEMES+GC R+
Sbjct: 416 CKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRST 475
Query: 301 VTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQ 360
VTYNT+ID CK RIEEAEE+FD+M+ GISR++VT+NTLIDGLCK++R++DA +L++Q
Sbjct: 476 VTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQ 535
Query: 361 MIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGR 420
M+ EGL+P TYNS+LT+YC+ GD+K+AADI++ MT+NG E D+VTYGTLI GLCKAGR
Sbjct: 536 MVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLCKAGR 595
Query: 421 VEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKH 480
+VA KLLR +++KGI TP+AYNPVIQ+LFRR +A+ LFREM E +PPDALTYK
Sbjct: 596 TQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLFREMTEVGEPPDALTYKI 655
Query: 481 VFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDK 540
VFRGLC GGGPI EA DF++EM+ +GF+PEFSSF MLAEGL++LG ++ L+ I+++++K
Sbjct: 656 VFRGLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEGLLNLGMDDYLISAIELIIEK 715
Query: 541 AKFSDRETSMVRGFLKIRKFQDALATFGDILDSRMPRKTFR 581
AKF + + S +RG+LKIRK+ DALATFG +L+ P+ T+R
Sbjct: 716 AKFRESDVSAIRGYLKIRKYYDALATFGRLLEINNPQWTYR 756
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 587 | ||||||
| TAIR|locus:2083976 | 754 | MEE40 "maternal effect embryo | 0.993 | 0.773 | 0.752 | 4e-241 | |
| TAIR|locus:2024296 | 598 | AT1G09900 "AT1G09900" [Arabido | 0.831 | 0.816 | 0.315 | 1.4e-78 | |
| TAIR|locus:1009023134 | 644 | AT1G12775 [Arabidopsis thalian | 0.906 | 0.826 | 0.311 | 4e-74 | |
| TAIR|locus:2077061 | 619 | AT3G22470 "AT3G22470" [Arabido | 0.890 | 0.844 | 0.309 | 7.5e-73 | |
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.882 | 0.822 | 0.321 | 2e-72 | |
| TAIR|locus:2015228 | 614 | AT1G63080 [Arabidopsis thalian | 0.797 | 0.762 | 0.331 | 5.3e-72 | |
| TAIR|locus:2173403 | 730 | AT5G64320 "AT5G64320" [Arabido | 0.887 | 0.713 | 0.294 | 8.6e-72 | |
| TAIR|locus:2015213 | 629 | AT1G63150 [Arabidopsis thalian | 0.923 | 0.861 | 0.308 | 2.9e-71 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.882 | 0.823 | 0.317 | 3.7e-71 | |
| TAIR|locus:2015218 | 590 | AT1G63070 [Arabidopsis thalian | 0.870 | 0.866 | 0.323 | 2.1e-70 |
| TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2324 (823.1 bits), Expect = 4.0e-241, P = 4.0e-241
Identities = 440/585 (75%), Positives = 504/585 (86%)
Query: 1 LKLVETAHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTT 60
LKLVE +HA M GIKPDVSTFN+LIKALC+AHQ+RPAILM+E+MP YGL PDE+TFTT
Sbjct: 170 LKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTT 229
Query: 61 LMQGLIEEGNLDGALRIREQMVEHGCXXXXXXXXXXXHGFCKEGRIEDALSFIQEMVSE- 119
+MQG IEEG+LDGALRIREQMVE GC HGFCKEGR+EDAL+FIQEM ++
Sbjct: 230 VMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQD 289
Query: 120 GFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEA 179
GF PDQ+T+NTLVNGLCK GHVK A+E+MD+MLQEG+DPDV+TYNS+ISGLCKLGEV+EA
Sbjct: 290 GFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEA 349
Query: 180 VEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQG 239
VE+L+QMI RDCSPNT+TYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQG
Sbjct: 350 VEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQG 409
Query: 240 LCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGXXXXXXXXXXXXXSSGCARN 299
LCLT N VAMELF+EM++KGC+PDEFTYNMLIDSLCS+G SGCAR+
Sbjct: 410 LCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARS 469
Query: 300 VVTYNTLIDGFCKLKRXXXXXXXXXXXXXQGISRNSVTYNTLIDGLCKSRRVEDAAQLMD 359
V+TYNTLIDGFCK + G+SRNSVTYNTLIDGLCKSRRVEDAAQLMD
Sbjct: 470 VITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMD 529
Query: 360 QMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAG 419
QMIMEG KPDK+TYNSLLT++CR GDIK+AADIVQ MTSNGCEPDIVTYGTLI GLCKAG
Sbjct: 530 QMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAG 589
Query: 420 RVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKAD-PPDALTY 478
RVEVASKLLRSIQMKGI LTP AYNPVIQ LFR+++TTEA+ LFREM+E+ + PPDA++Y
Sbjct: 590 RVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSY 649
Query: 479 KHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVM 538
+ VFRGLCNGGGPI EAVDF++E+LE+GF+PEFSS YMLAEGL++L EETLV+L++MVM
Sbjct: 650 RIVFRGLCNGGGPIREAVDFLVELLEKGFVPEFSSLYMLAEGLLTLSMEETLVKLVNMVM 709
Query: 539 DKAKFSDRETSMVRGFLKIRKFQDALATFGDILDSRMPRKTFRSR 583
KA+FS+ E SMV+G LKIRKFQDALAT G +LDSR PR+T+RSR
Sbjct: 710 QKARFSEEEVSMVKGLLKIRKFQDALATLGGVLDSRQPRRTYRSR 754
|
|
| TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 790 (283.2 bits), Expect = 1.4e-78, P = 1.4e-78
Identities = 155/492 (31%), Positives = 259/492 (52%)
Query: 62 MQGLIEEGNLDGALRIREQMVEHGCXXXXXXXXXXXHGFCKEGRIEDALSFIQEMVSEGF 121
++ ++ G L+ + E MV HG GFC+ G+ A ++ + G
Sbjct: 109 LRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGA 168
Query: 122 NPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVE 181
PD TYN +++G CK G + AL V+D M PDV TYN+++ LC G++++A+E
Sbjct: 169 VPDVITYNVMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAME 225
Query: 182 ILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLC 241
+L++M+ RDC P+ ITY LI C+++ V A +L + +G PDV T+N L+ G+C
Sbjct: 226 VLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGIC 285
Query: 242 LTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGXXXXXXXXXXXXXSSGCARNVV 301
D A++ +M + GCQP+ T+N+++ S+CS G G + +VV
Sbjct: 286 KEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVV 345
Query: 302 TYNTLIDGFCKLKRXXXXXXXXXXXXXQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQM 361
T+N LI+ C+ G NS++YN L+ G CK ++++ A + +++M
Sbjct: 346 TFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERM 405
Query: 362 IMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRV 421
+ G PD TYN++LT C+ G ++ A +I+ ++S GC P ++TY T+I GL KAG+
Sbjct: 406 VSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKT 465
Query: 422 EVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHV 481
A KLL ++ K + Y+ ++ L R + EA++ F E P+A+T+ +
Sbjct: 466 GKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSI 525
Query: 482 FRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKA 541
GLC A+DF++ M+ RG P +S+ +L EGL G + +EL++ + +K
Sbjct: 526 MLGLCKSR-QTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKG 584
Query: 542 KFSDRETSMVRG 553
V G
Sbjct: 585 LMKKSSAEQVAG 596
|
|
| TAIR|locus:1009023134 AT1G12775 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
Identities = 166/533 (31%), Positives = 268/533 (50%)
Query: 2 KLVETAHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTL 61
+LV M S+GI + T +I+I C+ ++ A M ++ G PD F TL
Sbjct: 105 ELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTL 164
Query: 62 MQGLIEEGNLDGALRIREQMVEHGCXXXXXXXXXXXHGFCKEGRIEDALSFIQEMVSEGF 121
+ GL E + AL + ++MVE G +G C G++ DA+ I MV GF
Sbjct: 165 LNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGF 224
Query: 122 NPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVE 181
P++ TY ++N +CK G A+E++ M + D Y+ +I GLCK G ++ A
Sbjct: 225 QPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFN 284
Query: 182 ILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLC 241
+ N+M ++ + ITYNTLI C + ++ +L R + + I P+V TF+ LI
Sbjct: 285 LFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFV 344
Query: 242 LTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGXXXXXXXXXXXXXSSGCARNVV 301
A +L +EM +G P+ TYN LID C S GC +++
Sbjct: 345 KEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIM 404
Query: 302 TYNTLIDGFCKLKRXXXXXXXXXXXXXQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQM 361
T+N LI+G+CK R +G+ N+VTYNTL+ G C+S ++E A +L +M
Sbjct: 405 TFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEM 464
Query: 362 IMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRV 421
+ ++PD +Y LL C G++++A +I + + E DI Y +I G+C A +V
Sbjct: 465 VSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKV 524
Query: 422 EVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHV 481
+ A L S+ +KG+ L +AYN +I L R+ ++A LFR+M E+ PD LTY +
Sbjct: 525 DDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNIL 584
Query: 482 FRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELI 534
R G A + + EM GF + S+ M+ L S +++ ++++
Sbjct: 585 IRAHL-GDDDATTAAELIEEMKSSGFPADVSTVKMVINMLSSGELDKSFLDML 636
|
|
| TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 736 (264.1 bits), Expect = 7.5e-73, P = 7.5e-73
Identities = 162/524 (30%), Positives = 263/524 (50%)
Query: 11 MVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGN 70
M GI+ D+ T I+I C+ ++ A ++ G PD TF+TL+ G EG
Sbjct: 96 MELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGR 155
Query: 71 LDGALRIREQMVEHGCXXXXXXXXXXXHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNT 130
+ A+ + ++MVE +G C +GR+ +AL I MV GF PD+ TY
Sbjct: 156 VSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGP 215
Query: 131 LVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRD 190
++N LCK G+ AL++ M + V Y+ +I LCK G ++A+ + N+M ++
Sbjct: 216 VLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKG 275
Query: 191 CSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAM 250
+ +TY++LI LC + + ++ ++ R + + I+PDV TF++LI A
Sbjct: 276 IKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAK 335
Query: 251 ELFQEMKTKGCQPDEFTYNMLIDSLCSRGXXXXXXXXXXXXXSSGCARNVVTYNTLIDGF 310
EL+ EM T+G PD TYN LID C S GC ++VTY+ LI+ +
Sbjct: 336 ELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSY 395
Query: 311 CKLKRXXXXXXXXXXXXXQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDK 370
CK KR +G+ N++TYNTL+ G C+S ++ A +L +M+ G+ P
Sbjct: 396 CKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSV 455
Query: 371 FTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRS 430
TY LL C G++ +A +I + M + I Y +I G+C A +V+ A L S
Sbjct: 456 VTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCS 515
Query: 431 IQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGG 490
+ KG+ YN +I L ++ +EA LFR+M E PD TY + R G G
Sbjct: 516 LSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSG 575
Query: 491 PIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELI 534
I +V+ + EM GF + S+ M+ + L +++ ++++
Sbjct: 576 LIS-SVELIEEMKVCGFSADSSTIKMVIDMLSDRRLDKSFLDML 618
|
|
| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
Identities = 167/519 (32%), Positives = 254/519 (48%)
Query: 3 LVETAHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLM 62
LV + M + GI ++ T++ILI C+ Q+ A+ ++ +M G PD T +L+
Sbjct: 99 LVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLL 158
Query: 63 QGLIEEGNLDGALRIREQMVEHGCXXXXXXXXXXXHGFCKEGRIEDALSFIQEMVSEGFN 122
G + A+ + QMVE G HG + R +A++ + MV +G
Sbjct: 159 NGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQ 218
Query: 123 PDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEI 182
PD TY +VNGLCK G + AL ++ M Q +P V YN++I LC V +A+ +
Sbjct: 219 PDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNL 278
Query: 183 LNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCL 242
+M + PN +TYN+LI LC + +A+ L + + I P+V TF++LI
Sbjct: 279 FTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVK 338
Query: 243 TSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGXXXXXXXXXXXXXSSGCARNVVT 302
A +L+ EM + PD FTY+ LI+ C S C NVVT
Sbjct: 339 EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVT 398
Query: 303 YNTLIDGFCKLKRXXXXXXXXXXXXXQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMI 362
YNTLI GFCK KR +G+ N+VTY TLI G ++R ++A + QM+
Sbjct: 399 YNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMV 458
Query: 363 MEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVE 422
+G+ PD TY+ LL C G ++ A + + + + EPDI TY +I G+CKAG+VE
Sbjct: 459 SDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVE 518
Query: 423 VASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVF 482
L S+ +KG+ Y ++ R+ EA LFREM E+ PD+ TY +
Sbjct: 519 DGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLI 578
Query: 483 RGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGL 521
R G A + + EM F+ + S+ ++ L
Sbjct: 579 RAHLRDGDKAASA-ELIREMRSCRFVGDASTIGLVTNML 616
|
|
| TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 728 (261.3 bits), Expect = 5.3e-72, P = 5.3e-72
Identities = 155/468 (33%), Positives = 235/468 (50%)
Query: 11 MVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGN 70
M+ G P + T N L+ C ++I A+ ++++M G PD TFTTL+ GL +
Sbjct: 126 MMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNK 185
Query: 71 LDGALRIREQMVEHGCXXXXXXXXXXXHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNT 130
A+ + E+MV GC +G CK G + AL+ + +M D Y+T
Sbjct: 186 ASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYST 245
Query: 131 LVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRD 190
+++ LCK HV AL + M +G PDVFTY+SLIS LC G +A +L+ M+ R
Sbjct: 246 VIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERK 305
Query: 191 CSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAM 250
+PN +T+N+LI KE ++ EA +L + + I P++ T+NSLI G C+ D A
Sbjct: 306 INPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQ 365
Query: 251 ELFQEMKTKGCQPDEFTYNMLIDSLCSRGXXXXXXXXXXXXXSSGCARNVVTYNTLIDGF 310
++F M +K C PD TYN LI+ C G N VTY TLI GF
Sbjct: 366 QIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGF 425
Query: 311 CKLKRXXXXXXXXXXXXXQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDK 370
+ G+ N +TYNTL+DGLCK+ ++E A + + + ++PD
Sbjct: 426 FQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDI 485
Query: 371 FTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRS 430
+TYN + C+AG ++ D+ +++ G +PD++ Y T+I G CK G E A L
Sbjct: 486 YTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIK 545
Query: 431 IQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTY 478
++ G + YN +I+A R + L +EM DA TY
Sbjct: 546 MKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTY 593
|
|
| TAIR|locus:2173403 AT5G64320 "AT5G64320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 726 (260.6 bits), Expect = 8.6e-72, P = 8.6e-72
Identities = 156/530 (29%), Positives = 270/530 (50%)
Query: 2 KLVETAHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTL 61
K+ DM+SR I P + TF +++KA C ++I A+ ++ +M +G P+ + TL
Sbjct: 199 KVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTL 258
Query: 62 MQGLIEEGNLDGALRIREQMVEHGCXXXXXXXXXXXHGFCKEGRIEDALSFIQEMVSEGF 121
+ L + ++ AL++ E+M GC G CK RI +A + M+ GF
Sbjct: 259 IHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGF 318
Query: 122 NPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVE 181
PD TY L+NGLCK+G V A ++ + + P++ +N+LI G G +++A
Sbjct: 319 APDDITYGYLMNGLCKIGRVDAAKDLFYRIPK----PEIVIFNTLIHGFVTHGRLDDAKA 374
Query: 182 ILNQMILR-DCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGL 240
+L+ M+ P+ TYN+LI KE V A E+ + +KG P+V ++ L+ G
Sbjct: 375 VLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGF 434
Query: 241 CLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGXXXXXXXXXXXXXSSGCARNV 300
C D A + EM G +P+ +N LI + C GC +V
Sbjct: 435 CKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDV 494
Query: 301 VTYNTLIDGFCKLKRXXXXXXXXXXXXXQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQ 360
T+N+LI G C++ +G+ N+VTYNTLI+ + +++A +L+++
Sbjct: 495 YTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNE 554
Query: 361 MIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGR 420
M+ +G D+ TYNSL+ CRAG++ +A + + M +G P ++ LI GLC++G
Sbjct: 555 MVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGM 614
Query: 421 VEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKH 480
VE A + + + ++G +N +I L R R + + +FR++ + PPD +T+
Sbjct: 615 VEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNT 674
Query: 481 VFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETL 530
+ LC GG + +A + E +E GF+P ++ +L + ++ +ETL
Sbjct: 675 LMSWLCKGGF-VYDACLLLDEGIEDGFVPNHRTWSILLQSIIP---QETL 720
|
|
| TAIR|locus:2015213 AT1G63150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
Identities = 169/547 (30%), Positives = 265/547 (48%)
Query: 10 DMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEG 69
DMV P + FN L+ A+ K ++ I + E+M G++ D T++ +
Sbjct: 73 DMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRS 132
Query: 70 NLDGALRIREQMVEHGCXXXXXXXXXXXHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYN 129
L AL + +M++ G +G+C RI DA++ + +MV G+ PD FT+
Sbjct: 133 QLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFT 192
Query: 130 TLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILR 189
TL++GL +A+ ++D M+Q G PD+ TY ++++GLCK G+++ A+ +LN+M
Sbjct: 193 TLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAA 252
Query: 190 DCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVA 249
N + +NT+I +LCK VE A +L + +KGI P+V T+NSLI LC + A
Sbjct: 253 RIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDA 312
Query: 250 MELFQEMKTKGCQPDEFTYNMLIDSLCSRGXXXXXXXXXXXXXSSGCARNVVTYNTLIDG 309
L M K P+ T+N LID+ G + +TYN LI+G
Sbjct: 313 SRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLING 372
Query: 310 FCKLKRXXXXXXXXXXXXXQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPD 369
FC R + N TYNTLI+G CK +RVED +L +M GL +
Sbjct: 373 FCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGN 432
Query: 370 KFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLR 429
TY +++ + +AGD A + + M SN DI+TY L+ GLC G+++ A + +
Sbjct: 433 TVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFK 492
Query: 430 SIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGG 489
+Q + L YN +I+ + + + EA LF + K PD +TY + GLC+
Sbjct: 493 YLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSLSIK---PDVVTYNTMISGLCSKR 549
Query: 490 GPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDRET- 548
+ EA D +M E G LP ++ L + ELI + D T
Sbjct: 550 -LLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAASAELIKEMRSSGFVGDASTI 608
Query: 549 SMVRGFL 555
S+V L
Sbjct: 609 SLVTNML 615
|
|
| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
Identities = 165/519 (31%), Positives = 257/519 (49%)
Query: 16 IKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGAL 75
I D+ ++NILI C+ Q+ A+ ++ +M G PD T ++L+ G + A+
Sbjct: 111 ISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAV 170
Query: 76 RIREQMVEHGCXXXXXXXXXXXHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGL 135
+ +QM HG + +A++ I MV+ G PD FTY T+VNGL
Sbjct: 171 ALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGL 230
Query: 136 CKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNT 195
CK G + AL ++ M + + DV Y ++I LC V +A+ + +M + PN
Sbjct: 231 CKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNV 290
Query: 196 ITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQE 255
+TYN+LI LC + +A+ L + + I P+V TF++LI A +L+ E
Sbjct: 291 VTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDE 350
Query: 256 MKTKGCQPDEFTYNMLIDSLCSRGXXXXXXXXXXXXXSSGCARNVVTYNTLIDGFCKLKR 315
M + PD FTY+ LI+ C S C NVVTYNTLI GFCK KR
Sbjct: 351 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKR 410
Query: 316 XXXXXXXXXXXXXQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNS 375
+G+ N+VTYNTLI GL ++ + A ++ +M+ +G+ PD TY+
Sbjct: 411 VEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSI 470
Query: 376 LLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKG 435
LL C+ G +++A + + + + EPDI TY +I G+CKAG+VE L S+ +KG
Sbjct: 471 LLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKG 530
Query: 436 IVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEA 495
+ Y +I R+ EA LFREM E P++ TY + R G A
Sbjct: 531 VKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASA 590
Query: 496 VDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELI 534
+ + EM GF+ + S+ M+ L E++ +E++
Sbjct: 591 -ELIKEMRSCGFVGDASTISMVINMLHDGRLEKSYLEML 628
|
|
| TAIR|locus:2015218 AT1G63070 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
Identities = 166/513 (32%), Positives = 257/513 (50%)
Query: 10 DMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEG 69
DMV P + F+ L+ A+ K ++ I + E+M G++ + T++ +
Sbjct: 65 DMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRS 124
Query: 70 NLDGALRIREQMVEHGCXXXXXXXXXXXHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYN 129
L AL I +M++ G +GFC RI +A++ + +MV G+ PD T+
Sbjct: 125 QLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFT 184
Query: 130 TLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILR 189
TLV+GL + +A+ +++ M+ +G PD+ TY ++I+GLCK GE + A+ +LN+M
Sbjct: 185 TLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKG 244
Query: 190 DCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVA 249
+ + YNT+I LCK +++A +L + +KGI PDV T+N LI LC + A
Sbjct: 245 KIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDA 304
Query: 250 MELFQEMKTKGCQPDEFTYNMLIDSLCSRGXXXXXXXXXXXXXSSG-CARNVVTYNTLID 308
L +M K PD +N LID+ G S C +VV YNTLI
Sbjct: 305 SRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIK 364
Query: 309 GFCKLKRXXXXXXXXXXXXXQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKP 368
GFCK KR +G+ N+VTY TLI G ++R ++A + QM+ +G+ P
Sbjct: 365 GFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHP 424
Query: 369 DKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLL 428
D TYN LL C G+++ A + + M + DIVTY T+I LCKAG+VE L
Sbjct: 425 DIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLF 484
Query: 429 RSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNG 488
S+ +KG+ Y ++ R+ EA LF EM E P++ TY + R
Sbjct: 485 CSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRD 544
Query: 489 GGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGL 521
G A + + EM GF + S+F ++ L
Sbjct: 545 GDEAASA-ELIKEMRSCGFAGDASTFGLVTNML 576
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LFF1 | PP281_ARATH | No assigned EC number | 0.7931 | 0.9931 | 0.7732 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 587 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-41 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-34 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-29 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-28 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-23 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-22 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-21 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-21 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-20 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-19 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-19 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-19 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-18 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-15 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-12 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-11 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-11 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-10 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-10 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-10 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 9e-09 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 9e-09 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-08 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-08 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-06 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 1e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 2e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 2e-04 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 3e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 4e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 5e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 6e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 7e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam10037 | 417 | pfam10037, MRP-S27, Mitochondrial 28S ribosomal pr | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.003 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 2e-41
Identities = 109/429 (25%), Positives = 196/429 (45%), Gaps = 26/429 (6%)
Query: 53 PDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSF 112
P TF LM ++DGALR+ + E G L+ K G+++
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494
Query: 113 IQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCK 172
EMV+ G + T+ L++G + G V +A +M + PD +N+LIS +
Sbjct: 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554
Query: 173 LGEVEEAVEILNQM------ILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGI 226
G V+ A ++L +M I P+ IT L+ QV+ A E+ +++ I
Sbjct: 555 SGAVDRAFDVLAEMKAETHPID----PDHITVGALMKACANAGQVDRAKEVYQMIHEYNI 610
Query: 227 --LPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEA 284
P+V T + ++D A+ ++ +MK KG +PDE ++ L+D G L++A
Sbjct: 611 KGTPEVYTI--AVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA 668
Query: 285 LKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDG 344
++L++ G V+Y++L+ K ++A E++++++ + T N LI
Sbjct: 669 FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITA 728
Query: 345 LCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPD 404
LC+ ++ A +++ +M GL P+ TY+ LL R D D++ +G +P+
Sbjct: 729 LCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPN 788
Query: 405 IVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFR 464
+V + GLC R E A L V++ + P I+ K T+ A+ ++R
Sbjct: 789 LVMCRCIT-GLCLR-RFEKACAL------GEPVVSFDSGRPQIE----NKWTSWALMVYR 836
Query: 465 EMMEKADPP 473
E + P
Sbjct: 837 ETISAGTLP 845
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 140 bits (353), Expect = 1e-34
Identities = 96/426 (22%), Positives = 192/426 (45%), Gaps = 10/426 (2%)
Query: 65 LIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCK-EGRIEDALSFIQEMVSEGFNP 123
L+ +G + + + E M + G L + + CK + +++A F + + NP
Sbjct: 380 LLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR----NP 435
Query: 124 DQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEIL 183
T+N L++ + AL V+ ++ + G D Y +LIS K G+V+ E+
Sbjct: 436 TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVF 495
Query: 184 NQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLT 243
++M+ N T+ LI + QV +A ++ SK + PD FN+LI +
Sbjct: 496 HEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQS 555
Query: 244 SNFDVAMELFQEMK--TKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVV 301
D A ++ EMK T PD T L+ + + G ++ A ++ + +
Sbjct: 556 GAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE 615
Query: 302 TYNTLIDGFCKLK-RIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQ 360
Y T+ C K + A I+D+M+ +G+ + V ++ L+D + ++ A +++
Sbjct: 616 VY-TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674
Query: 361 MIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGR 420
+G+K +Y+SL+ A + K+A ++ +++ S P + T LI LC+ +
Sbjct: 675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQ 734
Query: 421 VEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKH 480
+ A ++L ++ G+ Y+ ++ A R+ + L + E P+ + +
Sbjct: 735 LPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRC 794
Query: 481 VFRGLC 486
+ GLC
Sbjct: 795 IT-GLC 799
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 9e-29
Identities = 135/637 (21%), Positives = 232/637 (36%), Gaps = 127/637 (19%)
Query: 7 AHADMVSRGIKPDVSTF------NILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTT 60
H SRG+ S+ N ++ALC Q+ A+ ++E M + DE +
Sbjct: 32 FHGRKRSRGLSVAASSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVA 91
Query: 61 LMQ-----------------------------------GLIEEGNLDGALRIREQMVEHG 85
L + + G L A + +M E
Sbjct: 92 LFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERD 151
Query: 86 CLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTY----------------- 128
+ NVLV G+ K G ++AL M+ G PD +T+
Sbjct: 152 LF----SWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207
Query: 129 ------------------NTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGL 170
N L+ K G V A V D M + D ++N++ISG
Sbjct: 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGY 263
Query: 171 CKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDV 230
+ GE E +E+ M P+ +T ++IS E+ + G DV
Sbjct: 264 FENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDV 323
Query: 231 CTFNSLIQGLCLTSNFDVAMELFQEMKTK------------------------------- 259
NSLIQ ++ A ++F M+TK
Sbjct: 324 SVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQD 383
Query: 260 GCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEA 319
PDE T ++ + G L+ +KL + E G VV N LI+ + K K I++A
Sbjct: 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKA 443
Query: 320 EEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTY 379
E+F + ++ +++ ++I GL + R +A QM++ LKP+ T + L+
Sbjct: 444 LEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSA 498
Query: 380 YCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLT 439
R G + +I ++ G D L+ + GR+ A S K +V
Sbjct: 499 CARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNS-HEKDVV-- 555
Query: 440 PQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFV 499
++N ++ + + A+ LF M+E PD +T+ + C+ G + + +++
Sbjct: 556 --SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA-CSRSGMVTQGLEYF 612
Query: 500 IEMLER-GFLPEFSSFYMLAEGLVSLGKEETLVELID 535
M E+ P + + + L GK I+
Sbjct: 613 HSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFIN 649
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 6e-28
Identities = 113/491 (23%), Positives = 210/491 (42%), Gaps = 60/491 (12%)
Query: 19 DVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIR 78
ST++ L++A IR + + G PD+ ++ ++ G L A R+
Sbjct: 122 PASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLF 181
Query: 79 EQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKV 138
++M E + ++ G G +A + +EM +G + + T+ ++ +
Sbjct: 182 DEMPER----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL 237
Query: 139 GHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITY 198
G + ++ +L+ G D F +LI K G++E+A + + M
Sbjct: 238 GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM------------ 285
Query: 199 NTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKT 258
E T +A +NS++ G L + A+ L+ EM+
Sbjct: 286 -------------PEKTTVA--------------WNSMLAGYALHGYSEEALCLYYEMRD 318
Query: 259 KGCQPDEFTYNMLIDSLCSR-GMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIE 317
G D+FT++++I + SR +LE A + + +G ++V L+D + K R+E
Sbjct: 319 SGVSIDQFTFSIMI-RIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRME 377
Query: 318 EAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLL 377
+A +FD M +N +++N LI G R A ++ ++MI EG+ P+ T+ ++L
Sbjct: 378 DARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVL 433
Query: 378 TYYCRAGDIKRAADIVQNMTSN-GCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGI 436
+ +G ++ +I Q+M+ N +P + Y +I L + G ++ A ++R K
Sbjct: 434 SACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPT 493
Query: 437 VLTPQAYNPVIQALFRRKRTTEAMRLFREMMEK--ADPPDALTYKHVFRGLCNGGGPIGE 494
V + AL R + + L R EK P+ L V L N G E
Sbjct: 494 V-------NMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAE 546
Query: 495 AVDFVIEMLER 505
A V+E L+R
Sbjct: 547 AAK-VVETLKR 556
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 4e-23
Identities = 61/236 (25%), Positives = 111/236 (47%), Gaps = 3/236 (1%)
Query: 9 ADMVSRG--IKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLI 66
A+M + I PD T L+KA A Q+ A + + + Y + +T +
Sbjct: 566 AEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCS 625
Query: 67 EEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQF 126
++G+ D AL I + M + G V + LV G ++ A +Q+ +G
Sbjct: 626 QKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685
Query: 127 TYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQM 186
+Y++L+ + K+ALE+ + + P V T N+LI+ LC+ ++ +A+E+L++M
Sbjct: 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM 745
Query: 187 ILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCL 242
PNTITY+ L+ +++ + +L GI P++ + GLCL
Sbjct: 746 KRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-GLCL 800
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 2e-22
Identities = 105/499 (21%), Positives = 200/499 (40%), Gaps = 56/499 (11%)
Query: 11 MVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGN 70
M+ G++PDV TF +++ + + + +G D L+ ++ G+
Sbjct: 178 MLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGD 237
Query: 71 LDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNT 130
+ A + ++M C ++ N ++ G+ + G + L M +PD T +
Sbjct: 238 VVSARLVFDRMPRRDC----ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITS 293
Query: 131 LVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRD 190
+++ +G + E+ +++ GF DV NSLI LG EA ++ ++M +D
Sbjct: 294 VISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKD 353
Query: 191 CSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAM 250
+++ +IS K ++A E ++ + PD T S++ + DV +
Sbjct: 354 ----AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGV 409
Query: 251 ELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGF 310
+L + + KG N LI+ +++AL++ + ++V+++ ++I G
Sbjct: 410 KLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGL 465
Query: 311 CKLKRIEEAEEIFDEMEIQGISRNSVTY-------------------------------- 338
R EA F +M + + NSVT
Sbjct: 466 RLNNRCFEALIFFRQM-LLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDG 524
Query: 339 ---NTLIDGLCKSRRVEDA-AQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQ 394
N L+D + R+ A Q + D ++N LLT Y G A ++
Sbjct: 525 FLPNALLDLYVRCGRMNYAWNQFNSH------EKDVVSWNILLTGYVAHGKGSMAVELFN 578
Query: 395 NMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMK-GIVLTPQAYNPVIQALFRR 453
M +G PD VT+ +L+ ++G V + S++ K I + Y V+ L R
Sbjct: 579 RMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRA 638
Query: 454 KRTTEAMRLFREMMEKADP 472
+ TEA +M DP
Sbjct: 639 GKLTEAYNFINKMPITPDP 657
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 99.2 bits (247), Expect = 1e-21
Identities = 102/430 (23%), Positives = 167/430 (38%), Gaps = 48/430 (11%)
Query: 8 HADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIE 67
H +V G DVS N LI+ A + M D ++T ++ G +
Sbjct: 311 HGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEK 366
Query: 68 EGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFT 127
G D AL M + +T+ ++ G ++ + + +G
Sbjct: 367 NGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVV 426
Query: 128 YNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMI 187
N L+ K + +ALEV + + DV ++ S+I+GL EA+ QM+
Sbjct: 427 ANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQML 482
Query: 188 LRDCSPNTITYNTLISTLCKENQVEEATEL-ARVLT----SKGILP-------------- 228
L PN++T +S + + E+ A VL G LP
Sbjct: 483 L-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMN 541
Query: 229 -----------DVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCS 277
DV ++N L+ G +A+ELF M G PDE T+ L+ + CS
Sbjct: 542 YAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA-CS 600
Query: 278 R-GMLEEALKLLKEMESS-GCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNS 335
R GM+ + L+ ME N+ Y ++D + ++ EA ++M I + +
Sbjct: 601 RSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPI---TPDP 657
Query: 336 VTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLL-TYYCRAGDIKRAADIVQ 394
+ L++ C+ R + +L Q I E L P+ Y LL Y AG A + +
Sbjct: 658 AVWGALLNA-CRIHRHVELGELAAQHIFE-LDPNSVGYYILLCNLYADAGKWDEVARVRK 715
Query: 395 NMTSNGCEPD 404
M NG D
Sbjct: 716 TMRENGLTVD 725
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 96.9 bits (241), Expect = 8e-21
Identities = 96/420 (22%), Positives = 183/420 (43%), Gaps = 16/420 (3%)
Query: 128 YNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKL-GEVEEAVEILNQM 186
Y N L + G +K +++++ M + G Y++ CK V+EA +
Sbjct: 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI 432
Query: 187 ILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNF 246
+P T+N L+S ++ A + R++ G+ D + +LI +
Sbjct: 433 R----NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKV 488
Query: 247 DVAMELFQEMKTKGCQPDEFTYNMLIDSLCSR-GMLEEALKLLKEMESSGCARNVVTYNT 305
D E+F EM G + + T+ LID C+R G + +A M S + V +N
Sbjct: 489 DAMFEVFHEMVNAGVEANVHTFGALIDG-CARAGQVAKAFGAYGIMRSKNVKPDRVVFNA 547
Query: 306 LIDGFCKLKRIEEAEEIFDEM--EIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIM 363
LI + ++ A ++ EM E I + +T L+ + +V+ A ++ QMI
Sbjct: 548 LISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY-QMIH 606
Query: 364 E-GLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVE 422
E +K Y + + GD A I +M G +PD V + L+ AG ++
Sbjct: 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLD 666
Query: 423 VASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVF 482
A ++L+ + +GI L +Y+ ++ A K +A+ L+ ++ P T +
Sbjct: 667 KAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALI 726
Query: 483 RGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAK 542
LC G + +A++ + EM G P ++ +L LV+ +++ ++ ++ +AK
Sbjct: 727 TALCE-GNQLPKALEVLSEMKRLGLCPNTITYSIL---LVASERKDDA-DVGLDLLSQAK 781
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 84.4 bits (210), Expect = 2e-20
Identities = 30/49 (61%), Positives = 40/49 (81%)
Query: 299 NVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCK 347
+VVTYNTLIDG+CK ++EEA ++F+EM+ +GI N TY+ LIDGLCK
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 82.1 bits (204), Expect = 1e-19
Identities = 29/50 (58%), Positives = 33/50 (66%)
Query: 263 PDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCK 312
PD TYN LID C +G +EEALKL EM+ G NV TY+ LIDG CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 81.7 bits (203), Expect = 1e-19
Identities = 28/50 (56%), Positives = 35/50 (70%)
Query: 158 PDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCK 207
PDV TYN+LI G CK G+VEEA+++ N+M R PN TY+ LI LCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 90.3 bits (224), Expect = 6e-19
Identities = 84/396 (21%), Positives = 156/396 (39%), Gaps = 53/396 (13%)
Query: 103 EGRIEDALSFIQEMVSEG-FNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVF 161
GR +AL + + + F TY+ LV + ++ V + GF+PD +
Sbjct: 100 CGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQY 159
Query: 162 TYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVL 221
N ++ K G + +A + ++M R N ++ T+I
Sbjct: 160 MMNRVLLMHVKCGMLIDARRLFDEMPER----NLASWGTIIG------------------ 197
Query: 222 TSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGML 281
GL N+ A LF+EM G + T+ +++ + G
Sbjct: 198 -----------------GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240
Query: 282 EEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTL 341
+L + +G + LID + K IE+A +FD M + +V +N++
Sbjct: 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSM 296
Query: 342 IDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGC 401
+ G E+A L +M G+ D+FT++ ++ + R ++ A + G
Sbjct: 297 LAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF 356
Query: 402 EPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMR 461
DIV L+ K GR+E A + + K ++ ++N +I R T+A+
Sbjct: 357 PLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLI----SWNALIAGYGNHGRGTKAVE 412
Query: 462 LFREMMEKADPPDALTYKHV-----FRGLCNGGGPI 492
+F M+ + P+ +T+ V + GL G I
Sbjct: 413 MFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEI 448
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 79.4 bits (197), Expect = 1e-18
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 123 PDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCK 172
PD TYNTL++G CK G V++AL++ + M + G P+V+TY+ LI GLCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 75.5 bits (187), Expect = 2e-17
Identities = 24/49 (48%), Positives = 35/49 (71%)
Query: 228 PDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLC 276
PDV T+N+LI G C + A++LF EMK +G +P+ +TY++LID LC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 73.2 bits (181), Expect = 2e-16
Identities = 23/49 (46%), Positives = 35/49 (71%)
Query: 334 NSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCR 382
+ VTYNTLIDG CK +VE+A +L ++M G+KP+ +TY+ L+ C+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 70.9 bits (175), Expect = 1e-15
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 368 PDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCK 417
PD TYN+L+ YC+ G ++ A + M G +P++ TY LI GLCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 68.6 bits (169), Expect = 6e-15
Identities = 22/47 (46%), Positives = 33/47 (70%)
Query: 91 VTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCK 137
VT N L+ G+CK+G++E+AL EM G P+ +TY+ L++GLCK
Sbjct: 4 VTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 61.6 bits (151), Expect = 1e-12
Identities = 20/34 (58%), Positives = 25/34 (73%)
Query: 294 SGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEME 327
G +VVTYNTLIDG C+ R++EA E+ DEME
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 59.7 bits (146), Expect = 6e-12
Identities = 20/34 (58%), Positives = 25/34 (73%)
Query: 259 KGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEME 292
KG +PD TYN LID LC G ++EA++LL EME
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.3 bits (145), Expect = 1e-11
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 18 PDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGL 65
PDV T+N LI CK ++ A+ + EM G+ P+ T++ L+ GL
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 58.1 bits (142), Expect = 2e-11
Identities = 20/32 (62%), Positives = 26/32 (81%)
Query: 155 GFDPDVFTYNSLISGLCKLGEVEEAVEILNQM 186
G PDV TYN+LI GLC+ G V+EAVE+L++M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.8 bits (141), Expect = 4e-11
Identities = 16/50 (32%), Positives = 29/50 (58%)
Query: 53 PDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCK 102
PD T+ TL+ G ++G ++ AL++ +M + G T ++L+ G CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 55.0 bits (134), Expect = 3e-10
Identities = 18/33 (54%), Positives = 28/33 (84%)
Query: 329 QGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQM 361
+G+ + VTYNTLIDGLC++ RV++A +L+D+M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 6e-10
Identities = 61/259 (23%), Positives = 115/259 (44%), Gaps = 11/259 (4%)
Query: 39 AILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVH 98
A+ + EM G++ D+ TF+ +++ L+ A + ++ G + V LV
Sbjct: 309 ALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVD 368
Query: 99 GFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDP 158
+ K GR+EDA + M + ++N L+ G G +A+E+ + M+ EG P
Sbjct: 369 LYSKWGRMEDARNVFDRMPRKNL----ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP 424
Query: 159 DVFTYNSLISGLCKLGEVEEAVEILNQMI-LRDCSPNTITYNTLISTLCKENQVEEATEL 217
+ T+ +++S G E+ EI M P + Y +I L +E ++EA +
Sbjct: 425 NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM 484
Query: 218 ARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEF-TYNMLIDSLC 276
R K P V + +L+ + N ++ K G P++ Y +L++
Sbjct: 485 IRRAPFK---PTVNMWAALLTACRIHKNLELGR--LAAEKLYGMGPEKLNNYVVLLNLYN 539
Query: 277 SRGMLEEALKLLKEMESSG 295
S G EA K+++ ++ G
Sbjct: 540 SSGRQAEAAKVVETLKRKG 558
|
Length = 697 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 53.9 bits (131), Expect = 6e-10
Identities = 20/36 (55%), Positives = 27/36 (75%), Gaps = 2/36 (5%)
Query: 399 NGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMK 434
G +PD+VTY TLI GLC+AGRV+ A +LL +M+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLD--EME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 52.4 bits (127), Expect = 3e-09
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 120 GFNPDQFTYNTLVNGLCKVGHVKQALEVMDMM 151
G PD TYNTL++GLC+ G V +A+E++D M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 8e-09
Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 35/85 (41%)
Query: 403 PDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRL 462
PD+VTY TLI G CK G+VE EA++L
Sbjct: 1 PDVVTYNTLIDGYCKKGKVE-----------------------------------EALKL 25
Query: 463 FREMMEKADPPDALTYKHVFRGLCN 487
F EM ++ P+ TY + GLC
Sbjct: 26 FNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 50.8 bits (123), Expect = 9e-09
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 224 KGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMK 257
KG+ PDV T+N+LI GLC D A+EL EM+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 9e-09
Identities = 21/35 (60%), Positives = 26/35 (74%)
Query: 301 VTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNS 335
VTYNTLIDG CK R+EEA E+F EM+ +GI +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 3e-08
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 161 FTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNT 195
TYN+LI GLCK G VEEA+E+ +M R P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 4e-08
Identities = 21/34 (61%), Positives = 27/34 (79%)
Query: 336 VTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPD 369
VTYNTLIDGLCK+ RVE+A +L +M G++PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 48.5 bits (117), Expect = 6e-08
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 189 RDCSPNTITYNTLISTLCKENQVEEATEL 217
+ P+ +TYNTLI LC+ +V+EA EL
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVEL 29
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 7e-08
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 266 FTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNV 300
TYN LID LC G +EEAL+L KEM+ G +V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 7e-08
Identities = 17/31 (54%), Positives = 25/31 (80%)
Query: 301 VTYNTLIDGFCKLKRIEEAEEIFDEMEIQGI 331
VTYN+LI G+CK ++EEA E+F EM+ +G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 2e-07
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 266 FTYNMLIDSLCSRGMLEEALKLLKEMESSGC 296
TYN LI C G LEEAL+L KEM+ G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 46.6 bits (112), Expect = 3e-07
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 14 RGIKPDVSTFNILIKALCKAHQIRPAILMMEEMP 47
+G+KPDV T+N LI LC+A ++ A+ +++EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 5e-07
Identities = 19/35 (54%), Positives = 26/35 (74%)
Query: 126 FTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDV 160
TYNTL++GLCK G V++ALE+ M + G +PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.8 bits (110), Expect = 6e-07
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 85 GCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMV 117
G VT N L+ G C+ GR+++A+ + EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 9e-07
Identities = 14/23 (60%), Positives = 18/23 (78%)
Query: 10 DMVSRGIKPDVSTFNILIKALCK 32
+M RGIKP+V T++ILI LCK
Sbjct: 28 EMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 1e-06
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 91 VTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPD 124
VT N L+ G CK GR+E+AL +EM G PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 1e-06
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 161 FTYNSLISGLCKLGEVEEAVEILNQMILRDC 191
TYNSLISG CK G++EEA+E+ +M +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 2e-06
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 371 FTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDI 405
TYN+L+ C+AG ++ A ++ + M G EPD+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.5 bits (116), Expect = 2e-06
Identities = 53/232 (22%), Positives = 93/232 (40%), Gaps = 6/232 (2%)
Query: 149 DMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPN-TITYNTLISTLCK 207
+ + L L KLG +EEA+E+L + + + PN L L
Sbjct: 48 EALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEA 107
Query: 208 ENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEF- 266
+ EEA EL + PD+ + L +++ A+EL+++ + +E
Sbjct: 108 LGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELA 167
Query: 267 -TYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDE 325
L L + G EEAL+LL++ + L + KL + EEA E + E
Sbjct: 168 EALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYY-E 226
Query: 326 MEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLL 377
++ N+ L L + R E+A + +++ + L PD + L
Sbjct: 227 KALELDPDNAEALYNLALLLLELGRYEEALEALEKALE--LDPDLYNLGLAL 276
|
Length = 291 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 7e-06
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 231 CTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDE 265
T+N+LI GLC + A+ELF+EMK +G +PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 8e-06
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 336 VTYNTLIDGLCKSRRVEDAAQLMDQMIMEGL 366
VTYN+LI G CK+ ++E+A +L +M +G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.8 bits (97), Expect = 3e-05
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 365 GLKPDKFTYNSLLTYYCRAGDIKRAADIVQNM 396
GLKPD TYN+L+ CRAG + A +++ M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 91 VTVNVLVHGFCKEGRIEDALSFIQEMVSEGF 121
VT N L+ G+CK G++E+AL +EM +G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 4e-05
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 126 FTYNTLVNGLCKVGHVKQALEVMDMMLQEGF 156
TYN+L++G CK G +++ALE+ M ++G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 5e-05
Identities = 36/145 (24%), Positives = 57/145 (39%), Gaps = 37/145 (25%)
Query: 9 ADMVSRGIK-----------------------------------PDVSTFNILIKALCKA 33
D +GIK P VST N LI ALC+
Sbjct: 673 QDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEG 732
Query: 34 HQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTV 93
+Q+ A+ ++ EM GL P+ T++ L+ + + D L + Q E G + N+ +
Sbjct: 733 NQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG-IKPNLVM 791
Query: 94 NVLVHGFCKEGRIEDALSFIQEMVS 118
+ G C R E A + + +VS
Sbjct: 792 CRCITGLCLR-RFEKACALGEPVVS 815
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 5e-05
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 232 TFNSLIQGLCLTSNFDVAMELFQEMKTKGC 261
T+NSLI G C + A+ELF+EMK KG
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 1e-04
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 300 VVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGI 331
+ TYN L+ K + A + +EM+ G+
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGL 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 2e-04
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 50 GLAPDERTFTTLMQGLIEEGNLDGALRIREQMV 82
GL PD T+ TL+ GL G +D A+ + ++M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.7 bits (101), Expect = 2e-04
Identities = 52/257 (20%), Positives = 98/257 (38%), Gaps = 5/257 (1%)
Query: 142 KQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMI-LRDCSPNTITYNT 200
AL ++ L + + + ++ L LGE+ EA+E+L + + L S
Sbjct: 5 LLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLL 64
Query: 201 LISTLCKENQVEEATELARVLTSKGILPDVC-TFNSLIQGLCLTSNFDVAMELFQEMKTK 259
L L K ++EEA EL +LP++ +L L ++ A+EL ++
Sbjct: 65 LALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALAL 124
Query: 260 GCQPDEFTYNMLIDSLCSRGMLEEALKLLKEME--SSGCARNVVTYNTLIDGFCKLKRIE 317
PD + + +L G EEAL+L ++ L L R E
Sbjct: 125 DPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYE 184
Query: 318 EAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLL 377
EA E+ ++ ++ L K + E+A + ++ + E + +L
Sbjct: 185 EALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKAL-ELDPDNAEALYNLA 243
Query: 378 TYYCRAGDIKRAADIVQ 394
G + A + ++
Sbjct: 244 LLLLELGRYEEALEALE 260
|
Length = 291 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 2e-04
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 126 FTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDP 158
TYN L+ L K G AL V++ M G P
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 45/225 (20%), Positives = 82/225 (36%), Gaps = 47/225 (20%)
Query: 1 LKLVETAHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTT 60
L+ + AHA ++ G D+ L+ K ++ A + + MP L
Sbjct: 341 LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNL--------- 391
Query: 61 LMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEG 120
++ N L+ G+ GR A+ + M++EG
Sbjct: 392 ------------------------------ISWNALIAGYGNHGRGTKAVEMFERMIAEG 421
Query: 121 FNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQ-EGFDPDVFTYNSLISGLCKLGEVEEA 179
P+ T+ +++ G +Q E+ M + P Y +I L + G ++EA
Sbjct: 422 VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481
Query: 180 VEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSK 224
MI R +P T N + + L ++ + EL R+ K
Sbjct: 482 Y----AMIRR--APFKPTVN-MWAALLTACRIHKNLELGRLAAEK 519
|
Length = 697 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 3e-04
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 371 FTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEP 403
TYN+LL +AGD A +++ M ++G +P
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 4e-04
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 265 EFTYNMLIDSLCSRGMLEEALKLLKEMESSGCA 297
TYN L+ +L G + AL +L+EM++SG
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLK 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.1 bits (97), Expect = 5e-04
Identities = 44/201 (21%), Positives = 77/201 (38%), Gaps = 4/201 (1%)
Query: 22 TFNILIKALCKAHQIRPAILMMEEMPGYGLAPDE-RTFTTLMQGLIEEGNLDGALRIREQ 80
+L AL K ++ A+ ++E+ L P+ L L G + AL + E+
Sbjct: 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEK 120
Query: 81 MVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMV--SEGFNPDQFTYNTLVNGLCKV 138
+ + + + G E+AL ++ + N L L +
Sbjct: 121 ALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEAL 180
Query: 139 GHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITY 198
G ++ALE+++ L+ D D +L KLG+ EEA+E + + D N
Sbjct: 181 GRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD-PDNAEAL 239
Query: 199 NTLISTLCKENQVEEATELAR 219
L L + + EEA E
Sbjct: 240 YNLALLLLELGRYEEALEALE 260
|
Length = 291 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 6e-04
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 336 VTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKP 368
TYN L+ L K+ + A ++++M GLKP
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.1 bits (87), Expect = 7e-04
Identities = 19/34 (55%), Positives = 24/34 (70%)
Query: 406 VTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLT 439
VTY TLI GLCKAGRVE A +L + ++ +GI
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 7e-04
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 406 VTYGTLIGGLCKAGRVEVASKLLRSIQMKGI 436
VTY +LI G CKAG++E A +L + ++ KG+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 7e-04
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 160 VFTYNSLISGLCKLGEVEEAVEILNQMILRDCSP 193
+ TYN+L+ L K G+ + A+ +L +M P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.001
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 232 TFNSLIQGLCLTSNFDVAMELFQEMKTKGCQP 263
T+N+L+ L + D+A+ + +EMK G +P
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 20/35 (57%), Positives = 25/35 (71%)
Query: 196 ITYNTLISTLCKENQVEEATELARVLTSKGILPDV 230
+TYNTLI LCK +VEEA EL + + +GI PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|220535 pfam10037, MRP-S27, Mitochondrial 28S ribosomal protein S27 | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 92 TVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVM-DM 150
T++ + K + AL ++ + G PD FT N L++ K G+ K A V+ ++
Sbjct: 103 TIHAWIRQCLKYQAPDKALYTLRNRIQYGIFPDDFTANLLLDSFLKKGNFKSAASVVTEL 162
Query: 151 MLQEGFD 157
MLQE FD
Sbjct: 163 MLQESFD 169
|
Members of this family of small ribosomal proteins possess one of three conserved blocks of sequence found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins, leaving open the possibility that MRP-S27 might be a functional partner of GTP-binding ribosomal proteins. Length = 417 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.003
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 442 AYNPVIQALFRRKRTTEAMRLFREMMEK 469
YN +I L + R EA+ LF+EM E+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKER 29
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 34.7 bits (81), Expect = 0.004
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 56 RTFTTLMQGLIEEGNLDGALRIREQMVEHGC 86
T+ TL+ GL + G ++ AL + ++M E G
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGI 31
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 587 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 100.0 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.98 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.96 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.96 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.95 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.95 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.94 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.94 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.94 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.93 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.93 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.92 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.92 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.92 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.9 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.89 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.88 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.85 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.84 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.83 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.83 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.81 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.81 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.81 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.8 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.79 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.78 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.78 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.78 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.77 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.77 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.76 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.76 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.76 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.75 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.75 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.75 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.75 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.74 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.74 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.73 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.72 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.7 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.7 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.7 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.69 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.68 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.66 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.65 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.65 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.64 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.63 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.62 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.62 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.6 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.58 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.58 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.58 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.57 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.56 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.54 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.54 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.53 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.52 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.52 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.5 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.5 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.48 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.48 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.46 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.45 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.45 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.41 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.4 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.4 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.38 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.34 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.34 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.33 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.33 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.3 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.27 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.27 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.26 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.22 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.22 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.2 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.2 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.18 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.17 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.15 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 99.14 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.14 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.13 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.12 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.11 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.1 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.1 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.09 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.06 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.03 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.03 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.02 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.0 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.99 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.98 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.97 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.96 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.96 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.93 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.92 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 98.91 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.91 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.88 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.88 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.79 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.74 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.72 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.71 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.69 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.68 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.68 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.64 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.64 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.63 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.63 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.62 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.6 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.58 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.54 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.51 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.51 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.49 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.45 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.44 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.4 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.38 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.38 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.38 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.35 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.32 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.32 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.32 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.32 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.3 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.3 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.29 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.28 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.28 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.27 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.25 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.24 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.21 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.2 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.18 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.13 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.13 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.13 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.11 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.09 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.08 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.08 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.06 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.04 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.04 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.03 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.02 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.01 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.0 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.0 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.98 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.98 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.98 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.97 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.96 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.94 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.93 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.92 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.91 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.91 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.87 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.86 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.86 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.79 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.76 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.75 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.72 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.72 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.72 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.68 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.68 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.64 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.63 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.61 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.6 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.57 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 97.56 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.56 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.48 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.48 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.47 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.37 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 97.36 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 97.34 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.32 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.32 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.31 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 97.29 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.28 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.28 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 97.28 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.26 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.25 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.22 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.2 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.19 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.16 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.15 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.13 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.12 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.08 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 97.05 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.05 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 97.04 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 96.95 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.93 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.92 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 96.9 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.9 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.88 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 96.87 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 96.86 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 96.84 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 96.81 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.81 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.81 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.77 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.71 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 96.71 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 96.68 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.68 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.66 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.49 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.47 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.4 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 96.4 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.33 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.31 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.3 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 96.24 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.23 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 96.19 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 96.17 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.13 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 96.1 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 96.05 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 95.95 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.91 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 95.88 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.83 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 95.83 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 95.79 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 95.75 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 95.68 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.67 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.61 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 95.46 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 95.35 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 95.24 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 95.2 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.01 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 94.88 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 94.79 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 94.73 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.7 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 94.69 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.67 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 94.62 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 94.54 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.51 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 94.51 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.37 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 94.29 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.23 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.21 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.08 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 93.89 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.79 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 93.72 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.6 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 93.58 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.57 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 93.22 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 93.17 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 92.88 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 92.79 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.74 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 92.67 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.64 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.47 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 92.41 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 92.41 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 92.39 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 92.38 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 92.35 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 92.3 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 92.24 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 92.19 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 92.11 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 91.98 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 91.78 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 91.72 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.71 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 91.7 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 91.35 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 91.2 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 91.14 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 91.11 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 91.1 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 91.0 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 90.78 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 90.76 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 90.68 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 90.52 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.5 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 90.22 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 90.11 | |
| PRK09687 | 280 | putative lyase; Provisional | 89.77 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 89.75 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 89.4 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 89.33 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 89.26 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 88.87 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 88.66 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 88.57 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 88.47 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 88.21 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 88.12 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 87.97 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 87.77 | |
| PRK09687 | 280 | putative lyase; Provisional | 87.77 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 87.53 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 87.33 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 87.27 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 87.17 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 86.76 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 86.7 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 86.14 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 85.97 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 85.73 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 85.59 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 85.58 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 85.58 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 85.55 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 85.47 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 85.44 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 85.22 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 85.08 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 84.9 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 84.87 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 84.61 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 84.38 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 84.17 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 83.55 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 82.98 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 82.98 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 82.77 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 82.71 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 82.48 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 81.42 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 81.41 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 81.35 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 81.22 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 81.19 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 80.77 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 80.34 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 80.33 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 80.27 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-65 Score=529.90 Aligned_cols=547 Identities=21% Similarity=0.286 Sum_probs=397.7
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 038622 2 KLVETAHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQM 81 (587)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 81 (587)
+.|.++|++|. +||..+|+.++.+|.+.|++++|..+|++|...|+.||..+|..++.++...+++..+.+++..+
T Consensus 138 ~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~ 213 (857)
T PLN03077 138 VHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHV 213 (857)
T ss_pred HHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHH
Confidence 45666777765 56777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcc
Q 038622 82 VEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVF 161 (587)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 161 (587)
.+.|..++..+++.|+.+|++.|+++.|..+|++|. .||..+|+.++.+|++.|++++|.++|++|...|+.||..
T Consensus 214 ~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ 289 (857)
T PLN03077 214 VRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLM 289 (857)
T ss_pred HHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChh
Confidence 777777777777888888888888888888888775 3577778888888888888888888888888888888888
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 038622 162 TYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLC 241 (587)
Q Consensus 162 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 241 (587)
+|+.++.++.+.|+.+.+.+++..+...|+.|+..+++.++.+|++.|++++|.++|++|. .||..+|+.++.+|.
T Consensus 290 ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~ 365 (857)
T PLN03077 290 TITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYE 365 (857)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHH
Confidence 8888888888888888888888888888878888888888888888888888888887775 357777888888888
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 038622 242 LTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEE 321 (587)
Q Consensus 242 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 321 (587)
+.|++++|.++|++|.+.|+.||..+|..++.++.+.|+++.|.++++.+.+.|..++..+++.++.+|.+.|++++|.+
T Consensus 366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 445 (857)
T PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445 (857)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888888887788888888888888888888888888888888888877788888888888888888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 038622 322 IFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGC 401 (587)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 401 (587)
+|++|.+ ++..+|+.++.+|.+.|+.++|..+|++|.. ++.||..+|..++.+|.+.|+.+.+.+++..+.+.|+
T Consensus 446 vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~ 520 (857)
T PLN03077 446 VFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGI 520 (857)
T ss_pred HHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCC
Confidence 8877753 4666788888888888888888888888775 4777777777777777777777777777777777777
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038622 402 EPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHV 481 (587)
Q Consensus 402 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 481 (587)
.++..+++.++.+|.+.|++++|.++|+.+ .++..+|+.++.+|.+.|+.++|+++|++|.+.|+.||..+|..+
T Consensus 521 ~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~l 595 (857)
T PLN03077 521 GFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISL 595 (857)
T ss_pred CccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHH
Confidence 666666666666666666666666666554 345566666666666666666666666666666666666666666
Q ss_pred HHHHHhCCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCchhhhhhhHHHHHHH
Q 038622 482 FRGLCNGGGPIGEAVDFVIEML-ERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDRETSMVRGFLKIRKF 560 (587)
Q Consensus 482 ~~~~~~~~~~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (587)
+.+|.+.|. +++|.++|+.|. +.|+.|+...|..++++|.+.|++++|.++++++. ..|+...|..++.+|...|+.
T Consensus 596 l~a~~~~g~-v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~~pd~~~~~aLl~ac~~~~~~ 673 (857)
T PLN03077 596 LCACSRSGM-VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP-ITPDPAVWGALLNACRIHRHV 673 (857)
T ss_pred HHHHhhcCh-HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCh
Confidence 666666666 666666666666 45566666666666666666666666666666553 233333344444444444444
Q ss_pred HHHHHhcchhhh
Q 038622 561 QDALATFGDILD 572 (587)
Q Consensus 561 ~~A~~~~~~~~~ 572 (587)
+.|....+++.+
T Consensus 674 e~~e~~a~~l~~ 685 (857)
T PLN03077 674 ELGELAAQHIFE 685 (857)
T ss_pred HHHHHHHHHHHh
Confidence 444444444433
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-64 Score=522.80 Aligned_cols=557 Identities=19% Similarity=0.281 Sum_probs=531.6
Q ss_pred ChHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 038622 1 LKLVETAHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQ 80 (587)
Q Consensus 1 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 80 (587)
++.|..+|++|...|+.||..+|+.++++|.+.+++..+.+++..+.+.|+.||+.+++.++.+|.+.|++++|..+|+.
T Consensus 168 ~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~ 247 (857)
T PLN03077 168 FDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDR 247 (857)
T ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhc
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc
Q 038622 81 MVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDV 160 (587)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 160 (587)
|. .++..+|+.++.+|++.|++++|+.+|++|...|+.||..+|+.++.++.+.|+.+.+.+++..+.+.|+.||.
T Consensus 248 m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~ 323 (857)
T PLN03077 248 MP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDV 323 (857)
T ss_pred CC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccch
Confidence 86 35778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 038622 161 FTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGL 240 (587)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 240 (587)
.+|+.++.+|++.|++++|.++|++|. .|+..+|+.++.+|.+.|++++|+++|++|...|+.||..+|..++.++
T Consensus 324 ~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~ 399 (857)
T PLN03077 324 SVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSAC 399 (857)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHH
Confidence 999999999999999999999999986 4688899999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 038622 241 CLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAE 320 (587)
Q Consensus 241 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 320 (587)
.+.|+++.|.++++.+.+.|+.|+..+++.++..|.+.|++++|.++|++|.+ ++..+|+.++.+|.+.|+.++|+
T Consensus 400 ~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~ 475 (857)
T PLN03077 400 ACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEAL 475 (857)
T ss_pred hccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999864 57789999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 038622 321 EIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNG 400 (587)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 400 (587)
.+|++|.. ++.|+..+|..++.+|.+.|+.+.+.+++..+.+.|+.++..+++.++..|.+.|++++|..+|+.+
T Consensus 476 ~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---- 550 (857)
T PLN03077 476 IFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---- 550 (857)
T ss_pred HHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----
Confidence 99999986 5799999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCCCCHHHHH
Q 038622 401 CEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMM-EKADPPDALTYK 479 (587)
Q Consensus 401 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~ 479 (587)
.||..+|+.++.+|.+.|+.++|.++|++|.+.|+.||..+|+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|.
T Consensus 551 -~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~ 629 (857)
T PLN03077 551 -EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA 629 (857)
T ss_pred -CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 478999999999999999999999999999999999999999999999999999999999999999 578999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc-hhhhhhhHHHHH
Q 038622 480 HVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR-ETSMVRGFLKIR 558 (587)
Q Consensus 480 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 558 (587)
.++..+.+.|+ +++|.+++++|. +.|+..+|..|..+|...|+.+.+....+++.+..|.+.. +..+...|...|
T Consensus 630 ~lv~~l~r~G~-~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g 705 (857)
T PLN03077 630 CVVDLLGRAGK-LTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAG 705 (857)
T ss_pred HHHHHHHhCCC-HHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCC
Confidence 99999999999 999999999983 6899999999999999999999999999999999998765 555667899999
Q ss_pred HHHHHHHhcchhhhccCchhh
Q 038622 559 KFQDALATFGDILDSRMPRKT 579 (587)
Q Consensus 559 ~~~~A~~~~~~~~~~~~~~~~ 579 (587)
++++|.+..+.+.+.+.+++.
T Consensus 706 ~~~~a~~vr~~M~~~g~~k~~ 726 (857)
T PLN03077 706 KWDEVARVRKTMRENGLTVDP 726 (857)
T ss_pred ChHHHHHHHHHHHHcCCCCCC
Confidence 999999999999998866543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-62 Score=494.38 Aligned_cols=522 Identities=21% Similarity=0.314 Sum_probs=456.4
Q ss_pred CCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHH
Q 038622 17 KPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGL-APDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNV 95 (587)
Q Consensus 17 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 95 (587)
+++...|..++..|++.|++++|.++|++|.+.++ +++...+..++..|.+.|..++|..+++.|.. ++..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 55677888888888999999999999999988874 46667777888888899999999998888864 68888999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC
Q 038622 96 LVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGE 175 (587)
Q Consensus 96 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 175 (587)
++.+|++.|+++.|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHh--CCCCCCHhhHHHHHHHHHhcCChHHHHHHH
Q 038622 176 VEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTS--KGILPDVCTFNSLIQGLCLTSNFDVAMELF 253 (587)
Q Consensus 176 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 253 (587)
+++|.++|+.|...++.|+..+|+.++.+|++.|++++|.+++++|.. .++.||..+|+.++.+|.+.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999888899999999999999999999999999999976 567889999999999999999999999999
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 038622 254 QEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISR 333 (587)
Q Consensus 254 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 333 (587)
+.|.+.+++|+..+|+.++.+|++.|++++|.++|++|...|+.|+..+|+.++.+|++.|++++|.++++.|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999998999999999999999999999999999999999889999999999999999999999999999999999899
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHH
Q 038622 334 NSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIG 413 (587)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 413 (587)
+..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|...|+.||..+|..++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999998888899999999999999999999999999999998889999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh-----------------------cCCHHHHHHHHHHHHhcC
Q 038622 414 GLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFR-----------------------RKRTTEAMRLFREMMEKA 470 (587)
Q Consensus 414 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------------------~g~~~~A~~~~~~~~~~~ 470 (587)
+|.+.|++++|.+++++|.+.|+.|+..+|+.++..+.. .+..++|..+|++|.+.|
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~G 842 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAG 842 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCC
Confidence 999999999999999999999999998888888755331 122467889999999999
Q ss_pred CCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 471 DPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 471 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
+.||..+|..++..+...++ ...+..+++.+...+..|+..+|..+.+.+.+. .++|..+++.+.+.+..++
T Consensus 843 i~Pd~~T~~~vL~cl~~~~~-~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~ 914 (1060)
T PLN03218 843 TLPTMEVLSQVLGCLQLPHD-ATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPS 914 (1060)
T ss_pred CCCCHHHHHHHHHHhccccc-HHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCC
Confidence 99999999988877767777 888888888777655667788888888876322 3589999999988886654
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-62 Score=494.99 Aligned_cols=504 Identities=24% Similarity=0.380 Sum_probs=477.7
Q ss_pred hHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 038622 2 KLVETAHADMVSRGI-KPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQ 80 (587)
Q Consensus 2 ~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 80 (587)
+.|.++|++|.+.|+ +++...++.++..|.+.|..++|..+|+.|. .||..+|+.++.+|++.|+++.|.++|+.
T Consensus 387 ~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~----~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~ 462 (1060)
T PLN03218 387 KDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR----NPTLSTFNMLMSVCASSQDIDGALRVLRL 462 (1060)
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC----CCCHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 679999999999985 5688888899999999999999999999998 38999999999999999999999999999
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc
Q 038622 81 MVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDV 160 (587)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 160 (587)
|.+.|+.++..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|...|+.||.
T Consensus 463 M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~ 542 (1060)
T PLN03218 463 VQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR 542 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 038622 161 FTYNSLISGLCKLGEVEEAVEILNQMIL--RDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQ 238 (587)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 238 (587)
.+|+.++.+|++.|++++|.++|++|.. .++.|+..+|+.++.+|++.|++++|.++|+.|.+.++.|+..+|+.++.
T Consensus 543 vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ 622 (1060)
T PLN03218 543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN 622 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Confidence 9999999999999999999999999986 57889999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 038622 239 GLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEE 318 (587)
Q Consensus 239 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 318 (587)
+|.+.|++++|.++|++|.+.|+.||..+|..++.+|++.|++++|.++++.|.+.|+.|+..+|+.++.+|++.|++++
T Consensus 623 ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~ee 702 (1060)
T PLN03218 623 SCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKK 702 (1060)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038622 319 AEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTS 398 (587)
Q Consensus 319 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 398 (587)
|.++|++|...+..|+..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+|.+.|+++.|.+++..|.+
T Consensus 703 A~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 703 ALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE 782 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcchHHHHHHHHHh----c-------------------CChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 038622 399 NGCEPDIVTYGTLIGGLCK----A-------------------GRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKR 455 (587)
Q Consensus 399 ~~~~~~~~~~~~l~~~~~~----~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 455 (587)
.|+.|+..+|+.++..|.+ . +..+.|..+|++|.+.|+.|+..+|..++.++...+.
T Consensus 783 ~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~ 862 (1060)
T PLN03218 783 DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHD 862 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccccc
Confidence 9999999999998866432 1 1246799999999999999999999999988888899
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHH
Q 038622 456 TTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFS 512 (587)
Q Consensus 456 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~ 512 (587)
...+..+++.+...+..|+..+|+.++..+ |+..++|..++++|.+.|+.|+..
T Consensus 863 ~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 863 ATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcCCCCCcc
Confidence 999999999988877789999999999987 331468999999999999999753
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-56 Score=454.77 Aligned_cols=476 Identities=20% Similarity=0.312 Sum_probs=448.4
Q ss_pred CCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHH
Q 038622 17 KPDVSTFNILIKALCKAHQIRPAILMMEEMPGYG-LAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNV 95 (587)
Q Consensus 17 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 95 (587)
.++...|+.++..+.+.|++++|..+|+.|...+ +.||..+|+.++.++.+.++++.+.+++..+.+.|+.++..+++.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3456689999999999999999999999998754 678999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC
Q 038622 96 LVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGE 175 (587)
Q Consensus 96 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 175 (587)
++.+|++.|+++.|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|..++.++...|.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 9999999999999999999996 478999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHH
Q 038622 176 VEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQE 255 (587)
Q Consensus 176 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 255 (587)
.+.+.+++..+.+.++.++..+++.|+.+|++.|++++|.++|+.|.. +|..+|+.++.+|.+.|++++|.++|++
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998854 5889999999999999999999999999
Q ss_pred HHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH
Q 038622 256 MKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNS 335 (587)
Q Consensus 256 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 335 (587)
|.+.|+.||..+|..++.+|++.|++++|.+++..+.+.|++++..+++.++.+|++.|++++|.++|++|. .++.
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~ 391 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNL 391 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986 4688
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCcchHHHHHHH
Q 038622 336 VTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTS-NGCEPDIVTYGTLIGG 414 (587)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~ 414 (587)
.+|+.++.+|.+.|+.++|.++|++|...|+.||..||+.++.+|.+.|..++|.++|+.|.+ .|+.|+..+|..++.+
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~ 471 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999986 5899999999999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHH
Q 038622 415 LCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGE 494 (587)
Q Consensus 415 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 494 (587)
|.+.|++++|.++++++ +..|+..+|+.++.+|...|+.+.|..+++++.+.+ |.+..+|..++..|...|+ +++
T Consensus 472 l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~-~~~ 546 (697)
T PLN03081 472 LGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGR-QAE 546 (697)
T ss_pred HHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCC-HHH
Confidence 99999999999998765 467899999999999999999999999999998764 4556789999999999999 999
Q ss_pred HHHHHHHHHHcCCCC
Q 038622 495 AVDFVIEMLERGFLP 509 (587)
Q Consensus 495 A~~~~~~~~~~~~~p 509 (587)
|.++++.|.+.|+.+
T Consensus 547 A~~v~~~m~~~g~~k 561 (697)
T PLN03081 547 AAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHHHHHcCCcc
Confidence 999999999988764
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-55 Score=446.47 Aligned_cols=480 Identities=19% Similarity=0.273 Sum_probs=454.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 038622 53 PDERTFTTLMQGLIEEGNLDGALRIREQMVEHG-CLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTL 131 (587)
Q Consensus 53 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 131 (587)
.+...|+.++..+.+.|++++|+++|+.|...+ ..++..+|+.++.++.+.++++.+.+++..+.+.|+.||..+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 345589999999999999999999999998764 5788999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCH
Q 038622 132 VNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQV 211 (587)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 211 (587)
+..|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|+++|++|...++.|+..++..++.++...|..
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 9999999999999999999964 799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 038622 212 EEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEM 291 (587)
Q Consensus 212 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 291 (587)
+.+.+++..+.+.|..||..+++.++..|.+.|++++|.++|+.|. ++|..+|+.++..|.+.|+.++|.++|++|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999986 468999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh
Q 038622 292 ESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKF 371 (587)
Q Consensus 292 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 371 (587)
.+.|+.|+..+|+.++.+|++.|++++|.+++..|.+.|.+++..+++.++.+|++.|++++|.++|++|. .||..
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~ 392 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLI 392 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999985 47899
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCChHhHHHHHHHH
Q 038622 372 TYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQM-KGIVLTPQAYNPVIQAL 450 (587)
Q Consensus 372 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~ 450 (587)
+|+.++.+|.+.|+.++|.++|++|.+.|+.||..+|..++.+|...|+.++|.++|+.|.+ .++.|+..+|+.++..+
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l 472 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL 472 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999986 48999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhH
Q 038622 451 FRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEET 529 (587)
Q Consensus 451 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 529 (587)
.+.|++++|.++++++ +..|+..+|..++.+|...|+ ++.|...++++.+ +.| +...|..|+++|.+.|++++
T Consensus 473 ~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~-~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~ 546 (697)
T PLN03081 473 GREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKN-LELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAE 546 (697)
T ss_pred HhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCC-cHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHH
Confidence 9999999999999876 368999999999999999999 9999999999986 557 57789999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchhhh
Q 038622 530 LVELIDMVMDKAKFSDRETSM 550 (587)
Q Consensus 530 A~~~~~~~~~~~~~~~~~~~~ 550 (587)
|.++++.+.+.+...+...+|
T Consensus 547 A~~v~~~m~~~g~~k~~g~s~ 567 (697)
T PLN03081 547 AAKVVETLKRKGLSMHPACTW 567 (697)
T ss_pred HHHHHHHHHHcCCccCCCeeE
Confidence 999999999998765544333
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=351.98 Aligned_cols=557 Identities=11% Similarity=0.060 Sum_probs=343.4
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 038622 2 KLVETAHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQM 81 (587)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 81 (587)
+.|...++.+++.. |.+...+..+...+.+.|++++|...++.+.... +.++..+..++..+...|++++|...|+++
T Consensus 312 ~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 389 (899)
T TIGR02917 312 EQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKA 389 (899)
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 45677777777654 4556666677777777777777777777776654 556677777777777777777777777777
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcc
Q 038622 82 VEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVF 161 (587)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 161 (587)
.+.+ +.+...+..++..+...|++++|...++.+.+.+ +........++..+.+.|++++|.++++.+... .+++..
T Consensus 390 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~ 466 (899)
T TIGR02917 390 TELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNAS 466 (899)
T ss_pred HhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcH
Confidence 7664 4455666667777777777777777777776653 223344555566666667777777777666654 233455
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 038622 162 TYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLC 241 (587)
Q Consensus 162 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 241 (587)
++..++..+...|++++|...|+++...+ +.+...+..++..+...|++++|...++.+...+ +.+..++..+...+.
T Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 544 (899)
T TIGR02917 467 LHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYL 544 (899)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 66666666666777777777776666554 3345556666666666667777766666666543 235556666666666
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 038622 242 LTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEE 321 (587)
Q Consensus 242 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 321 (587)
..|++++|..+++++...+ +.+...+..++..+...|++++|..+++.+.+.. +.+...+..++.++...|++++|..
T Consensus 545 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 622 (899)
T TIGR02917 545 RTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVS 622 (899)
T ss_pred HcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666665543 4445555566666666666666666666665543 4455566666666666666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 038622 322 IFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGC 401 (587)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 401 (587)
.|+.+.... +.+...+..++.++...|++++|...++++.... +.+..++..++..+...|++++|..+++.+....+
T Consensus 623 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 700 (899)
T TIGR02917 623 SFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP 700 (899)
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 666665543 3445556666666666666666666666666532 22345555566666666666666666666655432
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038622 402 EPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHV 481 (587)
Q Consensus 402 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 481 (587)
++...+..++..+...|++++|.+.++++.... |+...+..++.++...|++++|.+.++++++.. |.+...+..+
T Consensus 701 -~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~l 776 (899)
T TIGR02917 701 -KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTAL 776 (899)
T ss_pred -CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 244455555666666666666666666665532 333455555666666666666666666666543 4455555555
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC-chhhhhhhHHHHHHH
Q 038622 482 FRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD-RETSMVRGFLKIRKF 560 (587)
Q Consensus 482 ~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 560 (587)
+..+...|+ +++|...|+++++.+ ++++.++..+++++...|+ .+|+.+++++++..|.+. .+..++.++...|++
T Consensus 777 a~~~~~~g~-~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 853 (899)
T TIGR02917 777 AELYLAQKD-YDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEA 853 (899)
T ss_pred HHHHHHCcC-HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence 555555666 666666666666532 2245555666666666666 556666666666555543 244555556666666
Q ss_pred HHHHHhcchhhhccCc
Q 038622 561 QDALATFGDILDSRMP 576 (587)
Q Consensus 561 ~~A~~~~~~~~~~~~~ 576 (587)
++|+..|+++++..+.
T Consensus 854 ~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 854 DRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHHHHHHHhhCCC
Confidence 6666666666665544
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-40 Score=350.83 Aligned_cols=552 Identities=14% Similarity=0.118 Sum_probs=467.8
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 038622 2 KLVETAHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQM 81 (587)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 81 (587)
+.|...++.+.+.. +.+...+..+...+.+.|++++|...|+++.+.. +.+...+..++..+...|++++|+..++.+
T Consensus 346 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 423 (899)
T TIGR02917 346 DEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETA 423 (899)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 46778888888765 6678888899999999999999999999988775 567788888899999999999999999999
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcc
Q 038622 82 VEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVF 161 (587)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 161 (587)
.+.+ +........++..+.+.|++++|..+++.+... .+++..++..++..+...|++++|.+.|+++.+.. +.+..
T Consensus 424 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~ 500 (899)
T TIGR02917 424 AQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFP 500 (899)
T ss_pred HhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHH
Confidence 8875 445566677888899999999999999998875 36677788899999999999999999999998763 33566
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 038622 162 TYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLC 241 (587)
Q Consensus 162 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 241 (587)
.+..++..+...|++++|.+.|+++...+ +.+..++..++..+...|++++|..+++++...+ +.+...+..++..+.
T Consensus 501 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 578 (899)
T TIGR02917 501 AAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYL 578 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHH
Confidence 77788888999999999999999998775 5577888889999999999999999999987764 346677888888999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 038622 242 LTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEE 321 (587)
Q Consensus 242 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 321 (587)
..|++++|..+++.+.+.. +.+...|..++.++...|++++|+..++.+.+.. +.+...+..++.++...|++++|..
T Consensus 579 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 656 (899)
T TIGR02917 579 GKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAIT 656 (899)
T ss_pred HCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999988764 6678889999999999999999999999988765 5667788889999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 038622 322 IFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGC 401 (587)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 401 (587)
.++++.... |.+...+..++..+...|++++|..+++.+.... +++...+..++..+...|++++|...++.+...+
T Consensus 657 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~- 733 (899)
T TIGR02917 657 SLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA- 733 (899)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-
Confidence 999988765 5677888889999999999999999999998864 4466778888888999999999999999988854
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038622 402 EPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHV 481 (587)
Q Consensus 402 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 481 (587)
|+...+..++.++...|++++|.+.++++.+..+. +...+..++..+...|++++|...|+++++.. |++...+..+
T Consensus 734 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l 810 (899)
T TIGR02917 734 -PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNL 810 (899)
T ss_pred -CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 45577788889999999999999999998886443 67888889999999999999999999999875 6778888888
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHHH
Q 038622 482 FRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFLKIRK 559 (587)
Q Consensus 482 ~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 559 (587)
+..+...|+ ++|+..++++++. .| ++..+..++.++...|++++|...++++++.+|.+ .....++.++.+.|+
T Consensus 811 ~~~~~~~~~--~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 886 (899)
T TIGR02917 811 AWLYLELKD--PRALEYAEKALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGR 886 (899)
T ss_pred HHHHHhcCc--HHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Confidence 888888887 6699999999884 45 67788889999999999999999999999998865 457888899999999
Q ss_pred HHHHHHhcchhhh
Q 038622 560 FQDALATFGDILD 572 (587)
Q Consensus 560 ~~~A~~~~~~~~~ 572 (587)
+++|...++++++
T Consensus 887 ~~~A~~~~~~~~~ 899 (899)
T TIGR02917 887 KAEARKELDKLLN 899 (899)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999988763
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-33 Score=294.29 Aligned_cols=554 Identities=12% Similarity=0.069 Sum_probs=382.9
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHH----------------HHHHHHH
Q 038622 2 KLVETAHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTF----------------TTLMQGL 65 (587)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----------------~~l~~~~ 65 (587)
+.|++.++.+.... |.|+.++..++..+.+.|+.++|.+.++++.+.. |.++... ...+..+
T Consensus 45 d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll 122 (1157)
T PRK11447 45 DLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEGRQALQQARLL 122 (1157)
T ss_pred HHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 56888888888776 6688899999999999999999999999999876 5555443 3345578
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHH
Q 038622 66 IEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQAL 145 (587)
Q Consensus 66 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 145 (587)
...|++++|++.|+++.+.+++........+.......|+.++|+..++++.+.. |.+...+..+...+...|++++|+
T Consensus 123 ~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl 201 (1157)
T PRK11447 123 ATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGF 201 (1157)
T ss_pred HhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHH
Confidence 8899999999999999987533222222222222334589999999999999874 556778888999999999999999
Q ss_pred HHHHHHHhCCC------------------C--------------CCcccH---------------------HHHHHHHHh
Q 038622 146 EVMDMMLQEGF------------------D--------------PDVFTY---------------------NSLISGLCK 172 (587)
Q Consensus 146 ~~~~~~~~~~~------------------~--------------~~~~~~---------------------~~l~~~~~~ 172 (587)
+.++++..... . |+.... ...+..+..
T Consensus 202 ~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~ 281 (1157)
T PRK11447 202 AVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVD 281 (1157)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 99988754311 0 110000 012445667
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHhhH------------HHHHHH
Q 038622 173 LGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILP-DVCTF------------NSLIQG 239 (587)
Q Consensus 173 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~------------~~l~~~ 239 (587)
.|++++|+..|++++..+ +.+..++..++.++.+.|++++|+..|++..+..... ....+ ......
T Consensus 282 ~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~ 360 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDA 360 (1157)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHH
Confidence 899999999999998875 5578889999999999999999999999988764321 11111 123456
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--------
Q 038622 240 LCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFC-------- 311 (587)
Q Consensus 240 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------- 311 (587)
+...|++++|...|+++++.. +.+...+..++.++...|++++|++.|+++.+.. +.+...+..++..+.
T Consensus 361 ~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~ 438 (1157)
T PRK11447 361 ALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKAL 438 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHH
Confidence 778899999999999998875 5567788888999999999999999999998765 444555555544442
Q ss_pred ----------------------------------ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038622 312 ----------------------------------KLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQL 357 (587)
Q Consensus 312 ----------------------------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 357 (587)
..|++++|++.|+++.... |.+...+..+...+.+.|++++|...
T Consensus 439 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 439 AFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3344444444444444432 23334444444444444444444444
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---------cchHHHHHHHHHhcCChHHHHHHH
Q 038622 358 MDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPD---------IVTYGTLIGGLCKAGRVEVASKLL 428 (587)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~a~~~~ 428 (587)
+++++... +.+...+..+...+...+++++|...++.+......++ ...+..++..+...|+.++|.+++
T Consensus 518 l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l 596 (1157)
T PRK11447 518 MRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL 596 (1157)
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 44444321 11222222333333444444444444443322111100 001223344556666666666666
Q ss_pred HHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 038622 429 RSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFL 508 (587)
Q Consensus 429 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~ 508 (587)
+. .+.+...+..++..+...|++++|+..|+++++.. |.+...+..++..+...|+ +++|++.++++++. .
T Consensus 597 ~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~-~~eA~~~l~~ll~~--~ 667 (1157)
T PRK11447 597 RQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGD-LAAARAQLAKLPAT--A 667 (1157)
T ss_pred Hh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHhcc--C
Confidence 51 23355677888899999999999999999999874 6677888888888889988 99999999988873 4
Q ss_pred C-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC-------chhhhhhhHHHHHHHHHHHHhcchhhh
Q 038622 509 P-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD-------RETSMVRGFLKIRKFQDALATFGDILD 572 (587)
Q Consensus 509 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~A~~~~~~~~~ 572 (587)
| ++.....++.++...|++++|.+.+++++...|..+ ....++..+...|+.++|+..|++++.
T Consensus 668 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 668 NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5 677788889999999999999999999988766542 234457778889999999999999875
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-30 Score=278.55 Aligned_cols=536 Identities=14% Similarity=0.080 Sum_probs=366.0
Q ss_pred HHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhH---------
Q 038622 23 FNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTV--------- 93 (587)
Q Consensus 23 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--------- 93 (587)
....++.....++.+.|.+.++++.... |.|+.++..++..+...|+.++|.+.++++.+.. |.+....
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhc
Confidence 3455677888999999999999999886 7789999999999999999999999999999986 4343332
Q ss_pred -------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHH
Q 038622 94 -------NVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFT-YNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNS 165 (587)
Q Consensus 94 -------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 165 (587)
..++..+...|++++|+..|+.+...+ +|+... ...+.......|+.++|++.++++.+.. +.+...+..
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~ 186 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNT 186 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 344557889999999999999998764 444321 1122222334699999999999999873 335677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC----------------CChh---hH----------------------------
Q 038622 166 LISGLCKLGEVEEAVEILNQMILRDCS----------------PNTI---TY---------------------------- 198 (587)
Q Consensus 166 l~~~~~~~g~~~~a~~~~~~~~~~~~~----------------~~~~---~~---------------------------- 198 (587)
++..+...|++++|+..++++...... ++.. .+
T Consensus 187 LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~ 266 (1157)
T PRK11447 187 LALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLA 266 (1157)
T ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhcc
Confidence 999999999999999999987543200 0000 00
Q ss_pred ------HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHhH---
Q 038622 199 ------NTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQP-DEFTY--- 268 (587)
Q Consensus 199 ------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~--- 268 (587)
...+..+...|++++|+..+++..... +.+..++..+..++...|++++|+..|+++.+..... +...+
T Consensus 267 dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~l 345 (1157)
T PRK11447 267 DPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESL 345 (1157)
T ss_pred CcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHH
Confidence 012445566788888888888877753 2366777778888888888888888888877653111 11111
Q ss_pred ---------HHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 038622 269 ---------NMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYN 339 (587)
Q Consensus 269 ---------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 339 (587)
...+..+...|++++|+..|+++.... |.+...+..++.++...|++++|++.|+++.... |.+...+.
T Consensus 346 l~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~ 423 (1157)
T PRK11447 346 LKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVR 423 (1157)
T ss_pred HHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 123455667788888888888887765 5566677777888888888888888888877664 44444444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC--------CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHH
Q 038622 340 TLIDGLCKSRRVEDAAQLMDQMIMEGLK--------PDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTL 411 (587)
Q Consensus 340 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 411 (587)
.+...+. .++.++|..+++.+...... .....+..++..+...|++++|+..++++++..+. +...+..+
T Consensus 424 ~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~L 501 (1157)
T PRK11447 424 GLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRL 501 (1157)
T ss_pred HHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 4444432 23344444444332211000 00011223334444555555555555555554322 33444555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChHhHH--------------------------------------------HHH
Q 038622 412 IGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYN--------------------------------------------PVI 447 (587)
Q Consensus 412 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--------------------------------------------~l~ 447 (587)
+.+|...|++++|...++++.+..+. ++..+. ..+
T Consensus 502 A~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a 580 (1157)
T PRK11447 502 AQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETA 580 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHH
Confidence 55555556666666555555543221 222222 234
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCC
Q 038622 448 QALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGK 526 (587)
Q Consensus 448 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 526 (587)
..+...|++++|+.+++ . .|++...+..++..+...|+ +++|+..|+++++. .| ++.++..++.+|...|+
T Consensus 581 ~~l~~~G~~~eA~~~l~----~-~p~~~~~~~~La~~~~~~g~-~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~ 652 (1157)
T PRK11447 581 NRLRDSGKEAEAEALLR----Q-QPPSTRIDLTLADWAQQRGD-YAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGD 652 (1157)
T ss_pred HHHHHCCCHHHHHHHHH----h-CCCCchHHHHHHHHHHHcCC-HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCC
Confidence 44555666666666655 1 25566667778888899999 99999999999984 56 78999999999999999
Q ss_pred HhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHHHHHHHHHhcchhhhccCc
Q 038622 527 EETLVELIDMVMDKAKFS-DRETSMVRGFLKIRKFQDALATFGDILDSRMP 576 (587)
Q Consensus 527 ~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 576 (587)
+++|++.++++++..|.+ +....++.++...|++++|++.|++++...++
T Consensus 653 ~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 703 (1157)
T PRK11447 653 LAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKS 703 (1157)
T ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCcc
Confidence 999999999999988876 34677888899999999999999999886543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-28 Score=244.05 Aligned_cols=550 Identities=11% Similarity=0.014 Sum_probs=352.2
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 038622 2 KLVETAHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQM 81 (587)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 81 (587)
+.|...|+..++.. |-+..++..|..+|.+.|+.++|+..++++.+.. |.|...+..+. .. +++++|..+++++
T Consensus 61 ~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~La-~i---~~~~kA~~~ye~l 134 (987)
T PRK09782 61 ATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSLA-AI---PVEVKSVTTVEEL 134 (987)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHHH-Hh---ccChhHHHHHHHH
Confidence 46888999998887 6678889999999999999999999999999875 44444444442 22 8999999999999
Q ss_pred HHcCCCCChhhHHHHHHH--------HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH-HHHHHhcCChHHHHHHHHHHH
Q 038622 82 VEHGCLVTNVTVNVLVHG--------FCKEGRIEDALSFIQEMVSEGFNPDQFTYNTL-VNGLCKVGHVKQALEVMDMML 152 (587)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~ 152 (587)
.... |.+..++..++.. |.+. ++|...++ .......|+..+.... ...|.+.|++++|++.+.++.
T Consensus 135 ~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~ 209 (987)
T PRK09782 135 LAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEAR 209 (987)
T ss_pred HHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 9986 5566677666665 5555 44444444 3222223344444444 899999999999999999999
Q ss_pred hCCCCCCcccHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-CCH
Q 038622 153 QEGFDPDVFTYNSLISGLCK-LGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGIL-PDV 230 (587)
Q Consensus 153 ~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~ 230 (587)
+.++ .+......+...|.. .++ +.+..+++.. ...++..+..++..+.+.|+.++|..+++++...... |..
T Consensus 210 k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~ 283 (987)
T PRK09782 210 QQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQE 283 (987)
T ss_pred hcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCcc
Confidence 9753 345556677778877 477 7888776542 2357888999999999999999999998887543111 211
Q ss_pred hhH------------------------------HHHHHHHHhcCChHHHHHHHH--------------------------
Q 038622 231 CTF------------------------------NSLIQGLCLTSNFDVAMELFQ-------------------------- 254 (587)
Q Consensus 231 ~~~------------------------------~~l~~~~~~~~~~~~a~~~~~-------------------------- 254 (587)
..+ ..++..+.+.++++.+.++..
T Consensus 284 ~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 363 (987)
T PRK09782 284 KSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALR 363 (987)
T ss_pred HHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHH
Confidence 111 111334445555554443321
Q ss_pred ---HHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCC---HHHHHHH----
Q 038622 255 ---EMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSG--CARNVVTYNTLIDGFCKLKR---IEEAEEI---- 322 (587)
Q Consensus 255 ---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~---~~~a~~~---- 322 (587)
.+.+. .+-+......+.......|+.++|..+++...... ...+......++..|.+.+. ..++..+
T Consensus 364 ~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~ 442 (987)
T PRK09782 364 LARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPL 442 (987)
T ss_pred HHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcccc
Confidence 11111 02234444444455566777888888888776521 11223344456666655544 2222221
Q ss_pred ---------------------HHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 038622 323 ---------------------FDEMEIQGISR--NSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTY 379 (587)
Q Consensus 323 ---------------------~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (587)
+..+... .|+ +...|..++.++.. ++.++|+..+.+.... .|+......++..
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~a 518 (987)
T PRK09782 443 PLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQ 518 (987)
T ss_pred ccchhHHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHH
Confidence 1111111 133 55666666666665 6777777777776654 3454443334444
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHH
Q 038622 380 YCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEA 459 (587)
Q Consensus 380 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 459 (587)
+...|++++|...++++... .|....+..++.++...|++++|..+++++.+..+. ....+..++......|++++|
T Consensus 519 l~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eA 595 (987)
T PRK09782 519 AYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELA 595 (987)
T ss_pred HHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHH
Confidence 55777777777777776543 233444556666777777777777777777765322 223333344444455777777
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 038622 460 MRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVM 538 (587)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 538 (587)
+..++++++. .|+...+..++.++.+.|+ +++|+..++++++ ..| ++.++..++.++...|++++|+..+++++
T Consensus 596 l~~~~~AL~l--~P~~~a~~~LA~~l~~lG~-~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 596 LNDLTRSLNI--APSANAYVARATIYRQRHN-VPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHHh--CCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7777777764 3456667777777777777 7777777777777 345 56677777777777777777777777777
Q ss_pred hcCCCC-CchhhhhhhHHHHHHHHHHHHhcchhhhccCchhhhh
Q 038622 539 DKAKFS-DRETSMVRGFLKIRKFQDALATFGDILDSRMPRKTFR 581 (587)
Q Consensus 539 ~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 581 (587)
+..|.+ +.+..++.++...|++++|+..|+++++..+..-.+.
T Consensus 671 ~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~ 714 (987)
T PRK09782 671 KGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALIT 714 (987)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhh
Confidence 777765 3467777777777777777777777777665544443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-27 Score=241.36 Aligned_cols=525 Identities=12% Similarity=0.037 Sum_probs=380.2
Q ss_pred HHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 038622 30 LCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDA 109 (587)
Q Consensus 30 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 109 (587)
+...|++++|+..|+.+.+.. |.++.++..++..|...|++++|+..++++.+.+ |.+...+..+... +++++|
T Consensus 54 ~~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~La~i----~~~~kA 127 (987)
T PRK09782 54 AQKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSLAAI----PVEVKS 127 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHHHHh----ccChhH
Confidence 344599999999999999987 7778999999999999999999999999999985 4444444444222 899999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHH--------HHhcCChHHHHHHHHHHHhCCCCCCcccHHHH-HHHHHhcCCHHHHH
Q 038622 110 LSFIQEMVSEGFNPDQFTYNTLVNG--------LCKVGHVKQALEVMDMMLQEGFDPDVFTYNSL-ISGLCKLGEVEEAV 180 (587)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~ 180 (587)
..+++++.+.. |.+..++..+... |.+. ++|.+.++ .......|+..+.... ...|...|++++|+
T Consensus 128 ~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai 202 (987)
T PRK09782 128 VTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQAD 202 (987)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHH
Confidence 99999999873 4445666666665 5555 56666665 3333233445545555 89999999999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHhc-cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038622 181 EILNQMILRDCSPNTITYNTLISTLCK-ENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTK 259 (587)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 259 (587)
..+.++.+.+ +.+......|..+|.. .++ +++..+++. ....++..+..++..+...|+.++|.++++++...
T Consensus 203 ~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~ 276 (987)
T PRK09782 203 TLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPL 276 (987)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccc
Confidence 9999999997 5567778888888887 466 777777553 23358888999999999999999999999887643
Q ss_pred CC-CCCHHhHH------------------------------HHHHHHHccCChHHHHHHHH-------------------
Q 038622 260 GC-QPDEFTYN------------------------------MLIDSLCSRGMLEEALKLLK------------------- 289 (587)
Q Consensus 260 ~~-~~~~~~~~------------------------------~l~~~~~~~~~~~~a~~~~~------------------- 289 (587)
.. .|...+|. ..+..+.+.++++.+.++..
T Consensus 277 ~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 356 (987)
T PRK09782 277 FTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATR 356 (987)
T ss_pred ccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccC
Confidence 11 12222211 12334445555554443321
Q ss_pred ----------HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHHhcCC---HHHH
Q 038622 290 ----------EMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQ-G-ISRNSVTYNTLIDGLCKSRR---VEDA 354 (587)
Q Consensus 290 ----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~---~~~A 354 (587)
.+.+. .+.+......+.-...+.|+.++|.++++..... + ...+......++..|...+. ..++
T Consensus 357 ~~~~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 435 (987)
T PRK09782 357 NKAEALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKV 435 (987)
T ss_pred chhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHH
Confidence 11111 1224444455555566788899999999887652 1 12233344467777766654 3333
Q ss_pred HHH----------------------HHHHHHc-CC-CC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchH
Q 038622 355 AQL----------------------MDQMIME-GL-KP--DKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTY 408 (587)
Q Consensus 355 ~~~----------------------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 408 (587)
..+ +...... +. ++ +...+..++.++.. +++++|+..+.+.... .|+....
T Consensus 436 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~ 512 (987)
T PRK09782 436 AILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQH 512 (987)
T ss_pred HHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHH
Confidence 222 2222221 11 23 56678888887776 8899999988888775 3554444
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhC
Q 038622 409 GTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNG 488 (587)
Q Consensus 409 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (587)
..++..+...|++++|...++++... .|....+..++.++...|++++|..+++++++.+ ++....+..+.......
T Consensus 513 L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~ 589 (987)
T PRK09782 513 RAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIP 589 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhC
Confidence 45566667899999999999998764 4455667788899999999999999999999874 44444444444455566
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC-chhhhhhhHHHHHHHHHHHHhc
Q 038622 489 GGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD-RETSMVRGFLKIRKFQDALATF 567 (587)
Q Consensus 489 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~ 567 (587)
|+ +++|...++++++ +.|+...+..++.++.+.|++++|+..++++++.+|.+. ....++.++...|++++|+..|
T Consensus 590 Gr-~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l 666 (987)
T PRK09782 590 GQ-PELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREML 666 (987)
T ss_pred CC-HHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 88 9999999999998 568889999999999999999999999999999999884 4788888999999999999999
Q ss_pred chhhhccCchhhhh
Q 038622 568 GDILDSRMPRKTFR 581 (587)
Q Consensus 568 ~~~~~~~~~~~~~~ 581 (587)
+++++..|....+.
T Consensus 667 ~~AL~l~P~~~~a~ 680 (987)
T PRK09782 667 ERAHKGLPDDPALI 680 (987)
T ss_pred HHHHHhCCCCHHHH
Confidence 99999887655443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-29 Score=226.27 Aligned_cols=448 Identities=15% Similarity=0.107 Sum_probs=330.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 038622 58 FTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCK 137 (587)
Q Consensus 58 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 137 (587)
...+..-..+.|++.+|.+.....-..+ +.+......+..++.+..+.+.....-...++.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 4556666678888888888777666654 3344444445556666667766665554555542 4556788888888888
Q ss_pred cCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHH
Q 038622 138 VGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATEL 217 (587)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 217 (587)
.|++++|+..++.+++.. +.....|..++.++...|+.+.|...|.+.+..+ |....+...++..+...|+..+|...
T Consensus 129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln-P~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN-PDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC-cchhhhhcchhHHHHhhcccchhHHH
Confidence 888888888888888763 1246778888888888888888888888887764 33344556667777778888888888
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHccCChHHHHHHHHHHHHCCC
Q 038622 218 ARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPD-EFTYNMLIDSLCSRGMLEEALKLLKEMESSGC 296 (587)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 296 (587)
|.+..+... .-...|..+...+..+|+...|+..|++.++. .|+ ...|..++..|...+.++.|+..|.++....
T Consensus 207 YlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr- 282 (966)
T KOG4626|consen 207 YLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR- 282 (966)
T ss_pred HHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-
Confidence 877776522 13456777888888888888888888888876 344 6778888888888888888888888887764
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 038622 297 ARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSL 376 (587)
Q Consensus 297 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 376 (587)
|....++..++..|...|.++-|+..|++.++.. |.-+..|+.+..++...|+..+|...|.+++... +.-....+.|
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NL 360 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNL 360 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHH
Confidence 5566677778888888888888888888887765 4456788888888888888888888888888742 2245567788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-HhHHHHHHHHHhcCC
Q 038622 377 LTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTP-QAYNPVIQALFRRKR 455 (587)
Q Consensus 377 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~ 455 (587)
+..+...|.++.|..+|....+..+. -....+.|+..|-++|++++|+..++++++ +.|+. .+++.++..|...|+
T Consensus 361 gni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhh
Confidence 88888888888888888888774222 355677888888888888888888888887 55554 678888888888888
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 038622 456 TTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPE-FSSFYMLAEGLV 522 (587)
Q Consensus 456 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 522 (587)
.+.|+..|.+++..+ |.-......++..+...|+ ..+|++.|+.+++ ++|| ++++.+++.++.
T Consensus 438 v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGn-i~~AI~sY~~aLk--lkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGN-IPEAIQSYRTALK--LKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCC-cHHHHHHHHHHHc--cCCCCchhhhHHHHHHH
Confidence 888888888888743 3334566777777778887 8888888888887 5674 667766666554
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-29 Score=226.01 Aligned_cols=444 Identities=13% Similarity=0.097 Sum_probs=374.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 038622 92 TVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLC 171 (587)
Q Consensus 92 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 171 (587)
....|+.-..+.|++.+|++.-...-..+ +.+......+...+.+..+.+.....-....+.. +.-.++|..++..+-
T Consensus 50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 50 DRLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILK 127 (966)
T ss_pred hHHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHH
Confidence 35667777889999999999887766553 4444455566677777777777776666666542 335789999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHhcCChHHHH
Q 038622 172 KLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVC-TFNSLIQGLCLTSNFDVAM 250 (587)
Q Consensus 172 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~ 250 (587)
..|++++|+..|+.+++.. +....+|..++.++...|+.+.|.+.|...+.. .|+.. ....+...+-..|..++|.
T Consensus 128 erg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred HhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhH
Confidence 9999999999999999986 558889999999999999999999999998875 34433 3344556666789999999
Q ss_pred HHHHHHHHcCCCCC-HHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 038622 251 ELFQEMKTKGCQPD-EFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQ 329 (587)
Q Consensus 251 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 329 (587)
..|.+.+.. .|. ...|..++..+...|+...|+..|+++.+.+ |.-..+|..++..|...+.++.|+..|.++...
T Consensus 205 ~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 205 ACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 999999876 344 6789999999999999999999999999886 556788999999999999999999999998876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchH
Q 038622 330 GISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPD-KFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTY 408 (587)
Q Consensus 330 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 408 (587)
. |.....+..+...|...|..+-|+..|+++++. .|+ ...|+.+..++-..|+..+|...|.+.+...+. .....
T Consensus 282 r-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam 357 (966)
T KOG4626|consen 282 R-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAM 357 (966)
T ss_pred C-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHH
Confidence 4 556677888888899999999999999999984 555 458999999999999999999999999986332 46788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHH
Q 038622 409 GTLIGGLCKAGRVEVASKLLRSIQMKGIVLT-PQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPD-ALTYKHVFRGLC 486 (587)
Q Consensus 409 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 486 (587)
+.|+..+...|.+++|..+|....+. .|. ....+.++..|-.+|++++|+..|+++++. .|+ ...+..++..|.
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~k 433 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYK 433 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHH
Confidence 99999999999999999999999984 344 468899999999999999999999999984 555 567899999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhH
Q 038622 487 NGGGPIGEAVDFVIEMLERGFLPE-FSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGF 554 (587)
Q Consensus 487 ~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~ 554 (587)
..|+ .+.|+..+.+++. +.|. .++..+|+.+|...|+..+|++.|+.+++..|+. +....+..++
T Consensus 434 e~g~-v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 434 EMGD-VSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCL 500 (966)
T ss_pred Hhhh-HHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHH
Confidence 9999 9999999999998 6784 7899999999999999999999999999999986 4555555443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-27 Score=225.73 Aligned_cols=566 Identities=14% Similarity=0.084 Sum_probs=419.5
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHH--HHcCChhhHHHHHHhhccCC--CCCCHHHHHHHHHHHHhcCChhHHHHH
Q 038622 2 KLVETAHADMVSRGIKPDVSTFNILIKAL--CKAHQIRPAILMMEEMPGYG--LAPDERTFTTLMQGLIEEGNLDGALRI 77 (587)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 77 (587)
+.|-+.|.-.++.. |+|. ...|++++ ...|++..|..+|+.++..+ .++|+ ...+..++.+.|+.+.|+..
T Consensus 147 ~~A~a~F~~Vl~~s-p~Ni--l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~--rIgig~Cf~kl~~~~~a~~a 221 (1018)
T KOG2002|consen 147 DDADAQFHFVLKQS-PDNI--LALLGKARIAYNKKDYRGALKYYKKALRINPACKADV--RIGIGHCFWKLGMSEKALLA 221 (1018)
T ss_pred HHHHHHHHHHHhhC-Ccch--HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCc--cchhhhHHHhccchhhHHHH
Confidence 45667777777765 5553 33444554 55789999999999976553 23443 44556778889999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 038622 78 REQMVEHGCLVTNVTVNVLVHGFCKEG---RIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQE 154 (587)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (587)
|+++.+.+ |....++..|...-.... .+..+..++...-..+ +-++.+.+.|...+.-.|+++.+..+..-+...
T Consensus 222 ~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 222 FERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 99999886 344555555544433333 3566777777766653 556777888899999999999999999888775
Q ss_pred CCC--CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhh
Q 038622 155 GFD--PDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCT 232 (587)
Q Consensus 155 ~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 232 (587)
... .-...|..++++|-..|++++|..+|.+....+.....-.+..++..+...|+++.+...|+.+.+.. +.+..+
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~et 378 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYET 378 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHH
Confidence 311 12456888999999999999999999998877523225567788999999999999999999998863 446677
Q ss_pred HHHHHHHHHhcC----ChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHH----HCCCCCCHHHHH
Q 038622 233 FNSLIQGLCLTS----NFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEME----SSGCARNVVTYN 304 (587)
Q Consensus 233 ~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~ 304 (587)
...++..|...+ ..+.|..++.+..... +.|...|..++..+...+.+.. +..|..+. ..+.++.+...+
T Consensus 379 m~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LN 456 (1018)
T KOG2002|consen 379 MKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLN 456 (1018)
T ss_pred HHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHH
Confidence 777777777664 4577788888777664 6678888888888776654444 77776654 344457788899
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHc---CCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-hhHH
Q 038622 305 TLIDGFCKLKRIEEAEEIFDEMEIQ---GISR------NSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDK-FTYN 374 (587)
Q Consensus 305 ~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~ 374 (587)
.++..+...|+++.|...|...... ...+ +..+-..+..+....++++.|.+.|..++.. .|.- ..|.
T Consensus 457 Nvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~yl 534 (1018)
T KOG2002|consen 457 NVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYL 534 (1018)
T ss_pred hHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHH
Confidence 9999999999999999999887654 1111 2223445667777888999999999999885 3443 3455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChHhHHHHHHHHHh-
Q 038622 375 SLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKG-IVLTPQAYNPVIQALFR- 452 (587)
Q Consensus 375 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~- 452 (587)
.++......++..+|...++.+...+- .++..+..++..+....++..|.+-|+.+.+.- ..+|..+...|+..+..
T Consensus 535 Rl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~ 613 (1018)
T KOG2002|consen 535 RLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQA 613 (1018)
T ss_pred HhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHH
Confidence 555444556788889999998887533 366777778888888888888888777776651 22355555566665542
Q ss_pred -----------cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038622 453 -----------RKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGL 521 (587)
Q Consensus 453 -----------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 521 (587)
.+..++|+++|.++++.+ |.+...-+.++..++..|+ +.+|..+|.+..+.. ....++|.+++.+|
T Consensus 614 l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~-~~~A~dIFsqVrEa~-~~~~dv~lNlah~~ 690 (1018)
T KOG2002|consen 614 LHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGR-FSEARDIFSQVREAT-SDFEDVWLNLAHCY 690 (1018)
T ss_pred hcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccC-chHHHHHHHHHHHHH-hhCCceeeeHHHHH
Confidence 345788888999888875 6677777778888888888 999999999988753 44678899999999
Q ss_pred HccCCHhHHHHHHHHHHhcCCCC---CchhhhhhhHHHHHHHHHHHHhcchhhhccCchhhhhhc
Q 038622 522 VSLGKEETLVELIDMVMDKAKFS---DRETSMVRGFLKIRKFQDALATFGDILDSRMPRKTFRSR 583 (587)
Q Consensus 522 ~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 583 (587)
..+|+|..|+++|+..++....+ +...-|+++++..|.+.+|.+...++....|....|.|+
T Consensus 691 ~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN 755 (1018)
T KOG2002|consen 691 VEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFN 755 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhH
Confidence 99999999999999988877644 346788889999999999999999999998888887775
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-26 Score=218.92 Aligned_cols=562 Identities=14% Similarity=0.085 Sum_probs=436.7
Q ss_pred HHHHHHHHHHhCC--CCCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHh---cCChhHHHHH
Q 038622 3 LVETAHADMVSRG--IKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIE---EGNLDGALRI 77 (587)
Q Consensus 3 ~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~ 77 (587)
.|..+|...+..+ .+||+ ...+..++++.|+.+.|...|+++.+.+ |.++.++..|...-.. ...+..+...
T Consensus 182 ~al~yyk~al~inp~~~aD~--rIgig~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~l 258 (1018)
T KOG2002|consen 182 GALKYYKKALRINPACKADV--RIGIGHCFWKLGMSEKALLAFERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQL 258 (1018)
T ss_pred HHHHHHHHHHhcCcccCCCc--cchhhhHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 5677888866543 34443 3345577789999999999999999886 5566666665544433 3456778888
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 038622 78 REQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFN--PDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEG 155 (587)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 155 (587)
+..+...+ +.++.+.+.|...+.-.|+++.+..+...+...... .-...|..+++.|-..|++++|..+|-+..+..
T Consensus 259 l~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~ 337 (1018)
T KOG2002|consen 259 LQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD 337 (1018)
T ss_pred HHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC
Confidence 88887776 678889999999999999999999999998875311 123468889999999999999999999998863
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccC----CHHHHHHHHHHHHhCCCCCCHh
Q 038622 156 FDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKEN----QVEEATELARVLTSKGILPDVC 231 (587)
Q Consensus 156 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~ 231 (587)
...-...+..++..+...|+++.+...|+.+.... |.+..+...|+..|...+ ..+.|..++.+..+.. +.|..
T Consensus 338 ~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~ 415 (1018)
T KOG2002|consen 338 NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSE 415 (1018)
T ss_pred CCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHH
Confidence 22224566778999999999999999999999885 667888888999888775 5677778887777763 44778
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH----HcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHC---CC------CC
Q 038622 232 TFNSLIQGLCLTSNFDVAMELFQEMK----TKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESS---GC------AR 298 (587)
Q Consensus 232 ~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~------~~ 298 (587)
.|..+...+.....+ .++.+|..+. ..+.++.+...+.++..+...|++.+|...|..+... .. .+
T Consensus 416 a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~ 494 (1018)
T KOG2002|consen 416 AWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKST 494 (1018)
T ss_pred HHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccc
Confidence 888887776555444 4477777665 3444577889999999999999999999999988664 11 12
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 038622 299 NVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLT 378 (587)
Q Consensus 299 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 378 (587)
+...-..++.+.-..++++.|.+.|..+.... |.-...|..++......++..+|...++.+... ...++..+..++.
T Consensus 495 ~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~arsl~G~ 572 (1018)
T KOG2002|consen 495 NLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-DSSNPNARSLLGN 572 (1018)
T ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHHHHHHHH
Confidence 33345678888888999999999999998874 444556666664555668889999999999875 3446677778888
Q ss_pred HHHhcCCHHHHHHHHHHHHHC-CCCCCcchHHHHHHHHHh------------cCChHHHHHHHHHHHHcCCCCChHhHHH
Q 038622 379 YYCRAGDIKRAADIVQNMTSN-GCEPDIVTYGTLIGGLCK------------AGRVEVASKLLRSIQMKGIVLTPQAYNP 445 (587)
Q Consensus 379 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 445 (587)
.+.....+..|.+-|..+.+. ...+|..+...|+..|.. .+..++|+.+|.++++.++. |..+-+.
T Consensus 573 ~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANG 651 (1018)
T KOG2002|consen 573 LHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANG 651 (1018)
T ss_pred HHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccc
Confidence 899888999999877777664 223577777778886653 34578899999999886544 6677789
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcc
Q 038622 446 VIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSL 524 (587)
Q Consensus 446 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 524 (587)
++-+++..|++.+|..+|.+..+.. .....+|.+++.+|...|+ |..|++.|+.+++.-... +..+...|++++++.
T Consensus 652 IgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~q-y~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~ 729 (1018)
T KOG2002|consen 652 IGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQ-YRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEA 729 (1018)
T ss_pred hhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHH-HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999874 4566788899999999999 999999999999763333 789999999999999
Q ss_pred CCHhHHHHHHHHHHhcCCCCCc-hhhhhhhHH-------------------HHHHHHHHHHhcchhhhccCc
Q 038622 525 GKEETLVELIDMVMDKAKFSDR-ETSMVRGFL-------------------KIRKFQDALATFGDILDSRMP 576 (587)
Q Consensus 525 g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~-------------------~~~~~~~A~~~~~~~~~~~~~ 576 (587)
|++.+|.+++..+....|.+.. .+.++.+.. ..+.++.|.+.|..+.....+
T Consensus 730 ~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 730 GKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred hhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999998754 444444433 345777888888888776655
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.1e-24 Score=212.60 Aligned_cols=432 Identities=14% Similarity=0.045 Sum_probs=301.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 038622 93 VNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCK 172 (587)
Q Consensus 93 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 172 (587)
+...+..+.+.|++++|+..|++++.. .|+...|..+..+|.+.|++++|++.++.+++.. +.+..++..++.++..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 445677788888888888888888875 5677778888888888888888888888888753 2246677788888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 038622 173 LGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMEL 252 (587)
Q Consensus 173 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 252 (587)
.|++++|+..|..+...+.. +......++..... ..+........+.. +++...+..+...+ ..........-
T Consensus 207 lg~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~ 279 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGNYL-QSFRPKPRPAG 279 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHHHH-HHccCCcchhh
Confidence 88888888888766544311 11111111111111 12223333333321 22222233232222 11111111111
Q ss_pred HHHHHHcCCCCC-HHhHHHHHHHH---HccCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 038622 253 FQEMKTKGCQPD-EFTYNMLIDSL---CSRGMLEEALKLLKEMESSG--CARNVVTYNTLIDGFCKLKRIEEAEEIFDEM 326 (587)
Q Consensus 253 ~~~~~~~~~~~~-~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 326 (587)
+...... .+. ...+..+...+ ...+.+++|++.|+.+...+ .+.....+..++.++...|++++|+..+++.
T Consensus 280 ~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ka 357 (615)
T TIGR00990 280 LEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKS 357 (615)
T ss_pred hhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2211111 111 11122222211 23468899999999998764 2345567888888999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc
Q 038622 327 EIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIV 406 (587)
Q Consensus 327 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 406 (587)
.... |.....|..++..+...|++++|...+++++... +.+...+..++.++...|++++|...|++.+...+. +..
T Consensus 358 l~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~ 434 (615)
T TIGR00990 358 IELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIF 434 (615)
T ss_pred HHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHH
Confidence 8775 5567788889999999999999999999998863 335778889999999999999999999999986433 566
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH------HHH
Q 038622 407 TYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALT------YKH 480 (587)
Q Consensus 407 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------~~~ 480 (587)
.+..++.++...|++++|+..++++....+. ++..++.++.++...|++++|++.|++++... +.+... +..
T Consensus 435 ~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~-p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELE-KETKPMYMNVLPLIN 512 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CccccccccHHHHHH
Confidence 7888899999999999999999999886433 57889999999999999999999999999863 211111 111
Q ss_pred HHHHH-HhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 481 VFRGL-CNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 481 l~~~~-~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
.+..+ ...|+ +++|..+++++++. .| +..++..+++++.+.|++++|+.+++++.+..+..
T Consensus 513 ~a~~~~~~~~~-~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 513 KALALFQWKQD-FIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred HHHHHHHHhhh-HHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 12223 33577 99999999999984 56 56678899999999999999999999999887653
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-24 Score=215.14 Aligned_cols=434 Identities=13% Similarity=0.009 Sum_probs=319.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHh
Q 038622 127 TYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLC 206 (587)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 206 (587)
.+...+..+.+.|++++|+..|++++.. .|+...|..+..+|.+.|++++|+..+++++..+ +.+..++..++.++.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 4567788899999999999999999885 5677888999999999999999999999999886 557789999999999
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHH
Q 038622 207 KENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALK 286 (587)
Q Consensus 207 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 286 (587)
..|++++|+..+..+...+.. +......++..... ..+........... +++...+..+...+ ..........
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~~~-~~~~~~~~~~ 278 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGNYL-QSFRPKPRPA 278 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHHHH-HHccCCcchh
Confidence 999999999888776554211 22212222222211 22333333333332 33333333333322 1111222222
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHH---HccCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038622 287 LLKEMESSGCARNVVTYNTLIDGF---CKLKRIEEAEEIFDEMEIQG--ISRNSVTYNTLIDGLCKSRRVEDAAQLMDQM 361 (587)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 361 (587)
-+....... +.....+..+...+ ...+++++|.+.|+.+...+ .+.....+..++..+...|++++|+..++++
T Consensus 279 ~~~~~~~~~-~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ka 357 (615)
T TIGR00990 279 GLEDSNELD-EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKS 357 (615)
T ss_pred hhhcccccc-cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 222221111 01111112222111 23478999999999998764 2345567888888999999999999999999
Q ss_pred HHcCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 038622 362 IMEGLKPD-KFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTP 440 (587)
Q Consensus 362 ~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 440 (587)
+.. .|+ ...+..++.++...|++++|...++++++.++. +...+..++.++...|++++|...|+++++..+. +.
T Consensus 358 l~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~ 433 (615)
T TIGR00990 358 IEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FI 433 (615)
T ss_pred HHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CH
Confidence 985 444 557888899999999999999999999886433 5778999999999999999999999999986443 56
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC-HHH------
Q 038622 441 QAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPE-FSS------ 513 (587)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~------ 513 (587)
..+..++.++...|++++|+..|+++++.. |.+...+..++..+...|+ +++|++.|+++++. .|+ ...
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~-~~~A~~~~~~Al~l--~p~~~~~~~~~~~ 509 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNK-FDEAIEKFDTAIEL--EKETKPMYMNVLP 509 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccC-HHHHHHHHHHHHhc--CCccccccccHHH
Confidence 788899999999999999999999999863 6677888899999999999 99999999999984 342 111
Q ss_pred HHHHH-HHHHccCCHhHHHHHHHHHHhcCCCCC-chhhhhhhHHHHHHHHHHHHhcchhhhccCchhh
Q 038622 514 FYMLA-EGLVSLGKEETLVELIDMVMDKAKFSD-RETSMVRGFLKIRKFQDALATFGDILDSRMPRKT 579 (587)
Q Consensus 514 ~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 579 (587)
+...+ ..+...|++++|...++++++.+|... .+..++.++.+.|++++|+..|+++.+.....++
T Consensus 510 l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 510 LINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 11222 233457999999999999999998775 4788999999999999999999999887765433
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-23 Score=208.45 Aligned_cols=363 Identities=11% Similarity=0.040 Sum_probs=252.4
Q ss_pred HhcCCHHHHHHHHHHHHhC--CCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHH
Q 038622 171 CKLGEVEEAVEILNQMILR--DCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDV 248 (587)
Q Consensus 171 ~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 248 (587)
.+..+|+.-.-++....+. +...+..-...++..+.+.|++++|..+++........ +...+..++.+....|+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHH
Confidence 3445555544444433322 11123334455666777788888888888877776333 45566666667777888888
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 038622 249 AMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEI 328 (587)
Q Consensus 249 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 328 (587)
|...++++.... |.+...+..++..+...|++++|+..++++.... |.+...+..++.++...|++++|...++.+..
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 888888887764 5556777777888888888888888888887764 55666777778888888888888888877765
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchH
Q 038622 329 QGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTY 408 (587)
Q Consensus 329 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 408 (587)
.. |.+...+..+ ..+...|++++|...+++++.....++......++.++...|++++|...++++....+. +...+
T Consensus 173 ~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~ 249 (656)
T PRK15174 173 EV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALR 249 (656)
T ss_pred hC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHH
Confidence 54 3333344333 346677888888888888776532233444445566777888888888888888775433 45667
Q ss_pred HHHHHHHHhcCChHH----HHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038622 409 GTLIGGLCKAGRVEV----ASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRG 484 (587)
Q Consensus 409 ~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 484 (587)
..++.++...|++++ |...++++....+. +...+..++..+...|++++|+..++++++.. |.+...+..++.+
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~ 327 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 778888888888775 78888888775433 55677888888888888888888888888764 5556666677777
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 485 LCNGGGPIGEAVDFVIEMLERGFLPE-FSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 485 ~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
+...|+ +++|+..++++++. .|+ ...+..++.++...|++++|+..++++++..|+.
T Consensus 328 l~~~G~-~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 328 LRQVGQ-YTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHCCC-HHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 888888 88888888888873 453 4445556777888888888888888888888765
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.2e-21 Score=172.99 Aligned_cols=546 Identities=13% Similarity=0.059 Sum_probs=298.1
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHH------
Q 038622 2 KLVETAHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGAL------ 75 (587)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~------ 75 (587)
..|+.++....+.+ |.++..|.+-.+.--..|++..|..+...-.+. ++.+..+|...++ ....+.|.
T Consensus 268 kKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeaiR----Lhp~d~aK~vvA~A 341 (913)
T KOG0495|consen 268 KKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAIR----LHPPDVAKTVVANA 341 (913)
T ss_pred HHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHHh----cCChHHHHHHHHHH
Confidence 46888999888877 778889988888888889999888877655433 1444445543322 22233333
Q ss_pred -------------------------HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 038622 76 -------------------------RIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNT 130 (587)
Q Consensus 76 -------------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 130 (587)
++++++++. +|.+...|. +.....+.++|+.++.++.+. ++.+. .
T Consensus 342 vr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWK----aAVelE~~~darilL~rAvec-cp~s~----d 411 (913)
T KOG0495|consen 342 VRFLPTSVRLWLKAADLESDTKNKKRVLRKALEH-IPRSVRLWK----AAVELEEPEDARILLERAVEC-CPQSM----D 411 (913)
T ss_pred HHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHh-CCchHHHHH----HHHhccChHHHHHHHHHHHHh-ccchH----H
Confidence 334444433 233333332 223344455566666666554 22222 2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCChhhHHHHHHHHh
Q 038622 131 LVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMI----LRDCSPNTITYNTLISTLC 206 (587)
Q Consensus 131 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~ 206 (587)
|..++.+..-++.|.+++.++.+. ++.+...|..-...-...|+.+...+++.+.+ ..|+..+...|..=+..+-
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 334455566677777777777664 45566666666666666677776666665543 2244445555555555555
Q ss_pred ccCCHHHHHHHHHHHHhCCCCC--CHhhHHHHHHHHHhcCChHHHHHHHHHHHHcC------------------------
Q 038622 207 KENQVEEATELARVLTSKGILP--DVCTFNSLIQGLCLTSNFDVAMELFQEMKTKG------------------------ 260 (587)
Q Consensus 207 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------------------ 260 (587)
..|..--+..+.......|+.. ...+|..-...|.+.+.++-|..+|...++.-
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLE 570 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHH
Confidence 5555555555554444443331 12344444444555555555555555444431
Q ss_pred ---------CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 038622 261 ---------CQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGI 331 (587)
Q Consensus 261 ---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 331 (587)
++.....|...+..+-..|+...|..++..+.+.. +.+...|...+.......+++.|..+|.+....
T Consensus 571 Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~-- 647 (913)
T KOG0495|consen 571 ALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI-- 647 (913)
T ss_pred HHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--
Confidence 12223333333444444445555555544444433 334444444444444444555555555444432
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHH
Q 038622 332 SRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPD-KFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGT 410 (587)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 410 (587)
.++..+|..-+....-.++.++|.+++++.++. -|+ ...|..+++.+-+.++.+.|...|..-.+. ++.....|..
T Consensus 648 sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWll 724 (913)
T KOG0495|consen 648 SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLL 724 (913)
T ss_pred CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHH
Confidence 234444444443333444455555555554442 222 223444444455555555555544444332 1113334444
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Q 038622 411 LIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGG 490 (587)
Q Consensus 411 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 490 (587)
+...-.+.|.+-.|..++++..-+++. +...|...++.-.+.|+.+.|..+..++++. .|.+...|..-+....+.++
T Consensus 725 LakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 725 LAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCccc
Confidence 444444455555555555555544433 4445555555555555555555555555543 24444444444443333333
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHHHHHHHHHhcch
Q 038622 491 PIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFLKIRKFQDALATFGD 569 (587)
Q Consensus 491 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~ 569 (587)
-...++.+++ +..|+.++...+..++...+++.|+++|+++++.+|+. |+|......+.++|.-++-...+++
T Consensus 803 -kTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~ 876 (913)
T KOG0495|consen 803 -KTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKK 876 (913)
T ss_pred -chHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 2333333222 45577888889999999999999999999999999987 7888888889999999999999988
Q ss_pred hhhccCchh
Q 038622 570 ILDSRMPRK 578 (587)
Q Consensus 570 ~~~~~~~~~ 578 (587)
.....|.-+
T Consensus 877 c~~~EP~hG 885 (913)
T KOG0495|consen 877 CETAEPTHG 885 (913)
T ss_pred HhccCCCCC
Confidence 887765543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-22 Score=204.38 Aligned_cols=419 Identities=13% Similarity=0.034 Sum_probs=241.3
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHH
Q 038622 87 LVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSL 166 (587)
Q Consensus 87 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 166 (587)
+.++....-.+.+....|+.++|++++.+..... +.+...+..++..+...|++++|.++|+++++.. +.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3344444444455555555555555555554421 3333345555555555555555555555555431 2233444455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh
Q 038622 167 ISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNF 246 (587)
Q Consensus 167 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 246 (587)
+.++...|++++|+..+++++... +.+.. +..++.++...|+.++|+..++++.+..+ .+...+..+..++...+..
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCh
Confidence 555555555555555555555543 33344 55555555555555555555555555421 1333344444444455555
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----HccCCH---HH
Q 038622 247 DVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGF-----CKLKRI---EE 318 (587)
Q Consensus 247 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~---~~ 318 (587)
+.|++.++.+.. .|+.. .. + .......++... ...+++ ++
T Consensus 167 e~Al~~l~~~~~---~p~~~--~~--------------l-------------~~~~~~~~~r~~~~~~~~~~~r~~~ad~ 214 (765)
T PRK10049 167 APALGAIDDANL---TPAEK--RD--------------L-------------EADAAAELVRLSFMPTRSEKERYAIADR 214 (765)
T ss_pred HHHHHHHHhCCC---CHHHH--HH--------------H-------------HHHHHHHHHHhhcccccChhHHHHHHHH
Confidence 555555543332 11100 00 0 000001111111 111223 55
Q ss_pred HHHHHHHHHHcC-CCCCH-HHH----HHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHhhHHHHHHHHHhcCCHHHHHH
Q 038622 319 AEEIFDEMEIQG-ISRNS-VTY----NTLIDGLCKSRRVEDAAQLMDQMIMEGLK-PDKFTYNSLLTYYCRAGDIKRAAD 391 (587)
Q Consensus 319 a~~~~~~~~~~~-~~~~~-~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~ 391 (587)
|+..++.+.... ..|+. ..+ ...+.++...|++++|+..|+++...+.+ |+. ....+..++...|++++|..
T Consensus 215 Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~ 293 (765)
T PRK10049 215 ALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQS 293 (765)
T ss_pred HHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHH
Confidence 666666665431 11111 111 11123345567777788777777765321 221 12224566777778888888
Q ss_pred HHHHHHHCCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----------CCC---hHhHHHHHHHHHhcC
Q 038622 392 IVQNMTSNGCEP---DIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGI-----------VLT---PQAYNPVIQALFRRK 454 (587)
Q Consensus 392 ~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g 454 (587)
.|+++....... .......+..++...|++++|..+++.+....+ .|+ ...+..++..+...|
T Consensus 294 ~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g 373 (765)
T PRK10049 294 ILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSN 373 (765)
T ss_pred HHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcC
Confidence 877776542211 123345556667777888888888777776421 122 134567788888999
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHH
Q 038622 455 RTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVEL 533 (587)
Q Consensus 455 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 533 (587)
++++|++++++++... |.+...+..++..+...|+ +++|++.++++++ +.| +..++..++..+...|++++|...
T Consensus 374 ~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~-~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~ 449 (765)
T PRK10049 374 DLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGW-PRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVL 449 (765)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 9999999999998874 6677788888888888999 9999999999998 457 688888999999999999999999
Q ss_pred HHHHHhcCCCCCch
Q 038622 534 IDMVMDKAKFSDRE 547 (587)
Q Consensus 534 ~~~~~~~~~~~~~~ 547 (587)
++++++..|++...
T Consensus 450 ~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 450 TDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHHhCCCCHHH
Confidence 99999999987543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.5e-22 Score=196.97 Aligned_cols=329 Identities=13% Similarity=0.088 Sum_probs=154.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 038622 166 LISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSN 245 (587)
Q Consensus 166 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 245 (587)
++..+.+.|++++|..+++..+... +.+..++..++.+....|++++|...++++.... +.+...+..+...+...|+
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCC
Confidence 3344444455555555555444443 2233444444444444555555555555554432 1233444444445555555
Q ss_pred hHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 038622 246 FDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDE 325 (587)
Q Consensus 246 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 325 (587)
+++|...++++.+.. +.+...+..++.++...|++++|...++.+.... +.+...+..+ ..+...|++++|...++.
T Consensus 126 ~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 126 YATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHH
Confidence 555555555554432 2334444445555555555555555555444332 2222222222 224444555555555555
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHH----HHHHHHHHHHCCC
Q 038622 326 MEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKR----AADIVQNMTSNGC 401 (587)
Q Consensus 326 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~~~~~~~ 401 (587)
+......++......++.++...|++++|+..+++++... +.+...+..++..+...|++++ |...++++....+
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P 281 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS 281 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC
Confidence 4443222222222333444455555555555555555432 1233444445555555555543 4555555555322
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038622 402 EPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHV 481 (587)
Q Consensus 402 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 481 (587)
. +...+..++..+...|++++|...++++....+. +...+..++.++...|++++|+..|+++...+ |.+...+..+
T Consensus 282 ~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-P~~~~~~~~~ 358 (656)
T PRK15174 282 D-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK-GVTSKWNRYA 358 (656)
T ss_pred C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccchHHHHHH
Confidence 2 3445555555555555555555555555554322 33445555555555555555555555555532 2222222223
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHH
Q 038622 482 FRGLCNGGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 482 ~~~~~~~~~~~~~A~~~~~~~~~ 504 (587)
+.++...|+ +++|+..|+++++
T Consensus 359 a~al~~~G~-~deA~~~l~~al~ 380 (656)
T PRK15174 359 AAALLQAGK-TSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHCCC-HHHHHHHHHHHHH
Confidence 444555555 5555555555554
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-22 Score=204.55 Aligned_cols=423 Identities=12% Similarity=0.063 Sum_probs=270.7
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 038622 122 NPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTL 201 (587)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 201 (587)
+.+.....-.+.+....|+.++|++++.++.... +.+...+..++..+...|++++|..+|++++... |.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3344444455555666666666666666665421 2233345566666666666666666666666553 3345555566
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCCh
Q 038622 202 ISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGML 281 (587)
Q Consensus 202 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 281 (587)
+.++...|++++|+..++++.+.. +.+.. +..+..++...|++++|+..++++.+.. |.+...+..++.++...+..
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCh
Confidence 666666666666666666665542 22344 5555556666666666666666666553 33444555555555555666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH---HHHHHHH
Q 038622 282 EEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRV---EDAAQLM 358 (587)
Q Consensus 282 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~ 358 (587)
+.|+..++.+.. .|+. ...+ ....+...... .+.......+++ ++|+..+
T Consensus 167 e~Al~~l~~~~~---~p~~--~~~l--------~~~~~~~~~r~--------------~~~~~~~~~~r~~~ad~Al~~~ 219 (765)
T PRK10049 167 APALGAIDDANL---TPAE--KRDL--------EADAAAELVRL--------------SFMPTRSEKERYAIADRALAQY 219 (765)
T ss_pred HHHHHHHHhCCC---CHHH--HHHH--------HHHHHHHHHHh--------------hcccccChhHHHHHHHHHHHHH
Confidence 666655554432 1210 0000 00000000000 000011122333 7788888
Q ss_pred HHHHHc-CCCCCHh-hHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 038622 359 DQMIME-GLKPDKF-TYN----SLLTYYCRAGDIKRAADIVQNMTSNGCE-PDIVTYGTLIGGLCKAGRVEVASKLLRSI 431 (587)
Q Consensus 359 ~~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 431 (587)
+.++.. ...|+.. .+. ..+..+...|++++|+..|+.+.+.+.. |+. ....++.+|...|++++|..+|+++
T Consensus 220 ~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~ 298 (765)
T PRK10049 220 DALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTEL 298 (765)
T ss_pred HHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 888864 1223321 111 1133456779999999999999886432 322 2233678899999999999999998
Q ss_pred HHcCCCC---ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----------CCCH---HHHHHHHHHHHhCCCCHHH
Q 038622 432 QMKGIVL---TPQAYNPVIQALFRRKRTTEAMRLFREMMEKAD-----------PPDA---LTYKHVFRGLCNGGGPIGE 494 (587)
Q Consensus 432 ~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~~~~~~~~~ 494 (587)
....+.. .......++.++...|++++|...++++..... .|+. ..+...+..+...|+ +++
T Consensus 299 l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~-~~e 377 (765)
T PRK10049 299 FYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSND-LPQ 377 (765)
T ss_pred hhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCC-HHH
Confidence 8753321 134566777788999999999999999987521 1231 234566777888899 999
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHHHHHHHHHhcchhhh
Q 038622 495 AVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFLKIRKFQDALATFGDILD 572 (587)
Q Consensus 495 A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 572 (587)
|++.+++++.. .| ++..+..++.++...|++++|++.++++++..|++ ......+..+...|++++|.+.++++++
T Consensus 378 A~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 378 AEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999984 46 78999999999999999999999999999999987 4577788889999999999999999999
Q ss_pred ccCchhhh
Q 038622 573 SRMPRKTF 580 (587)
Q Consensus 573 ~~~~~~~~ 580 (587)
..|....+
T Consensus 456 ~~Pd~~~~ 463 (765)
T PRK10049 456 REPQDPGV 463 (765)
T ss_pred hCCCCHHH
Confidence 88766554
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.3e-20 Score=182.81 Aligned_cols=463 Identities=13% Similarity=0.071 Sum_probs=256.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 038622 55 ERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNG 134 (587)
Q Consensus 55 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 134 (587)
+.+....+...++.|+++.|+..|+++++.+ |.+......++..+...|+.++|+.++++.... .+........++..
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~l 111 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAG-PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARA 111 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHH
Confidence 3344444444455555555555555555543 222111114555555555555555555555511 01112222222445
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHH
Q 038622 135 LCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEA 214 (587)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 214 (587)
+...|++++|+++|+++.+..+ .++..+..++..+...++.++|++.++++.... |+...+..++..+...++..+|
T Consensus 112 y~~~gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~A 188 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDA 188 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHH
Confidence 5555555555555555555421 124444444555555555555555555555442 2222222222333233444345
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHC
Q 038622 215 TELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESS 294 (587)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 294 (587)
++.++++.+.. +.+...+..+..+..+.|-...|.++..+-... +.+....+ + +.+.+.+..+....
T Consensus 189 L~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~--l--------~~~~~a~~vr~a~~- 255 (822)
T PRK14574 189 LQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQ--L--------ERDAAAEQVRMAVL- 255 (822)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHH--H--------HHHHHHHHHhhccc-
Confidence 55555555542 224444445555555555555555444321111 00000000 0 01111111111100
Q ss_pred CCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHcC--CCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 038622 295 GCARNVVTYNTLIDGFCKLKR---IEEAEEIFDEMEIQG--ISRNSV----TYNTLIDGLCKSRRVEDAAQLMDQMIMEG 365 (587)
Q Consensus 295 ~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~--~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 365 (587)
++. ....+ .+.|+.-++.+...- .|+... ...-.+.++...+++.++++.|+.+...+
T Consensus 256 --~~~-----------~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~ 322 (822)
T PRK14574 256 --PTR-----------SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEG 322 (822)
T ss_pred --ccc-----------cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcC
Confidence 000 00111 334444455544321 122211 22234456677788888888888888766
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCC----
Q 038622 366 LKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGC-----EPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGI---- 436 (587)
Q Consensus 366 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---- 436 (587)
.+....+...++.+|...+++++|..+++.+..... .++......|..+|...+++++|..+++++.+..+
T Consensus 323 ~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~ 402 (822)
T PRK14574 323 YKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVG 402 (822)
T ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEe
Confidence 443445667778888888888888888888766421 11222246677788888888888888888876322
Q ss_pred -------CCCh---HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 038622 437 -------VLTP---QAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERG 506 (587)
Q Consensus 437 -------~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 506 (587)
.|++ .....++..+...|+..+|.+.++++.... |-|......++..+...|. ..+|+..++.+..
T Consensus 403 ~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~-p~~A~~~~k~a~~-- 478 (822)
T PRK14574 403 VYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDL-PRKAEQELKAVES-- 478 (822)
T ss_pred ccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHhh--
Confidence 1232 234456777888899999999999998864 7778888888888888888 9999999977766
Q ss_pred CCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCchhhhhh
Q 038622 507 FLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDRETSMVR 552 (587)
Q Consensus 507 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 552 (587)
+.| +..+...++.++...|++++|..+.+++.+..|++.....+-+
T Consensus 479 l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~l~r 525 (822)
T PRK14574 479 LAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQELDR 525 (822)
T ss_pred hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHHHHH
Confidence 467 6778888999999999999999999999999998755443333
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-19 Score=158.87 Aligned_cols=483 Identities=9% Similarity=0.054 Sum_probs=370.3
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 038622 5 ETAHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEH 84 (587)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 84 (587)
+.-|++-++.+ ..+...|....+--..++++..|..+|++++..+ ..+...|...+..-.++.+...|..++++++..
T Consensus 59 RkefEd~irrn-R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~ 136 (677)
T KOG1915|consen 59 RKEFEDQIRRN-RLNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI 136 (677)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh
Confidence 34566666665 6678888888888888999999999999999877 678889999999999999999999999999987
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHH
Q 038622 85 GCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYN 164 (587)
Q Consensus 85 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 164 (587)
.|.-...|...+..--..|++..|.++|++.... .|+..+|...+..-.+.+.++.|..+|+...-. .|++..|.
T Consensus 137 -lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wi 211 (677)
T KOG1915|consen 137 -LPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWI 211 (677)
T ss_pred -cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHH
Confidence 3556667877887778889999999999999986 899999999999999999999999999999874 78999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC-C-CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC--HhhHHHHHHHH
Q 038622 165 SLISGLCKLGEVEEAVEILNQMILR-D-CSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPD--VCTFNSLIQGL 240 (587)
Q Consensus 165 ~l~~~~~~~g~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~ 240 (587)
..+..-.+.|+...+..+|+.++.. + -..+...+.+.+..-.++..++.|.-+|+-.++. ++.+ ...|......-
T Consensus 212 kyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fE 290 (677)
T KOG1915|consen 212 KYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFE 290 (677)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHH
Confidence 9999999999999999999998765 1 1123335566666666788899999999888876 2323 33444444333
Q ss_pred HhcCChHHHHH--------HHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHH--HHHHHH---
Q 038622 241 CLTSNFDVAME--------LFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVV--TYNTLI--- 307 (587)
Q Consensus 241 ~~~~~~~~a~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~--- 307 (587)
-+-|+.....+ -|+.+++.+ +-|-.+|...++.-...|+.+...++|++++..- ||-.. .|...+
T Consensus 291 KqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLW 368 (677)
T KOG1915|consen 291 KQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLW 368 (677)
T ss_pred HHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHH
Confidence 34455433322 245555554 6788899999999999999999999999998753 44221 121111
Q ss_pred -----HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHH----HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 038622 308 -----DGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTL----IDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLT 378 (587)
Q Consensus 308 -----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 378 (587)
-.-....+.+.+.++|+..++. +|....+|..+ ...-.++.+...|.+++..++. .-|...++...+.
T Consensus 369 inYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIe 445 (677)
T KOG1915|consen 369 INYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIE 445 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHH
Confidence 1123467899999999998874 45555555443 3344577899999999998885 5688889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCChHhHHHHHHHHHhcCCHH
Q 038622 379 YYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGI-VLTPQAYNPVIQALFRRKRTT 457 (587)
Q Consensus 379 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 457 (587)
.-.+.++++.+..+|++.++.++. +..+|...+..-...|+.+.|..+|+-++.... ......|...+..-...|.++
T Consensus 446 lElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~e 524 (677)
T KOG1915|consen 446 LELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFE 524 (677)
T ss_pred HHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHH
Confidence 999999999999999999997655 777888888888889999999999999887521 112356777777778899999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHH-----hCC-----------CCHHHHHHHHHHHHH
Q 038622 458 EAMRLFREMMEKADPPDALTYKHVFRGLC-----NGG-----------GPIGEAVDFVIEMLE 504 (587)
Q Consensus 458 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~-----------~~~~~A~~~~~~~~~ 504 (587)
.|..+|++.++. .+...+|...+..-. +.+ + ...|..+|+++..
T Consensus 525 kaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~-~~~AR~iferAn~ 584 (677)
T KOG1915|consen 525 KARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDEN-IKRARKIFERANT 584 (677)
T ss_pred HHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhhhcchhH-HHHHHHHHHHHHH
Confidence 999999999986 444456655554322 222 2 5678888888774
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-18 Score=158.63 Aligned_cols=517 Identities=11% Similarity=0.036 Sum_probs=417.2
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038622 6 TAHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHG 85 (587)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 85 (587)
+++...++. +|.++..|.. .+...+.+.|+.++.++.+. ++.+...|..+ .+..-|+.|..++.++.+.
T Consensus 367 RVlRKALe~-iP~sv~LWKa----AVelE~~~darilL~rAvec-cp~s~dLwlAl----arLetYenAkkvLNkaRe~- 435 (913)
T KOG0495|consen 367 RVLRKALEH-IPRSVRLWKA----AVELEEPEDARILLERAVEC-CPQSMDLWLAL----ARLETYENAKKVLNKAREI- 435 (913)
T ss_pred HHHHHHHHh-CCchHHHHHH----HHhccChHHHHHHHHHHHHh-ccchHHHHHHH----HHHHHHHHHHHHHHHHHhh-
Confidence 344444444 3666666644 34445566688888887765 24455555544 4556789999999999886
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--
Q 038622 86 CLVTNVTVNVLVHGFCKEGRIEDALSFIQEMV----SEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPD-- 159 (587)
Q Consensus 86 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-- 159 (587)
+|.+..+|..-...--.+|+.+...+++.+.+ ..|+..+...|..=+..+-..|..-.+..+....+..|+...
T Consensus 436 iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~ 515 (913)
T KOG0495|consen 436 IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDR 515 (913)
T ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchh
Confidence 68888999888888888999999888887654 357777888888888888899999999999999888776533
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 038622 160 VFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQG 239 (587)
Q Consensus 160 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 239 (587)
..+|..-...|.+.+.++-|+.+|..++... +.+...|...+..--..|..++...+++++... .+.....|......
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake 593 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKE 593 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHH
Confidence 4578888899999999999999999998774 557778888888888889999999999999886 34456667777778
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 038622 240 LCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEA 319 (587)
Q Consensus 240 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 319 (587)
+...|+...|..++..+.+.. +.+...|...+........++.|..+|.+.... .++..+|..-+......++.++|
T Consensus 594 ~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA 670 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEA 670 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHH
Confidence 888999999999999998875 456888999999999999999999999999875 47888888888888888999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038622 320 EEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSN 399 (587)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 399 (587)
++++++.++.- |.-...|..+++.+.+.++.+.|...|..-.+. .+.....|..+...--+.|++-+|..++++..-.
T Consensus 671 ~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 671 LRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 99999988763 555678888899999999999999999887764 4445667888888888889999999999999887
Q ss_pred CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 038622 400 GCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYK 479 (587)
Q Consensus 400 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 479 (587)
++. +...|...+++-.+.|+.+.|..++.++++. .+.+...|..-+....+.++-..+...+++. ..|++.+.
T Consensus 749 NPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVll 821 (913)
T KOG0495|consen 749 NPK-NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLL 821 (913)
T ss_pred CCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHH
Confidence 665 7888999999999999999999999998886 3335677887777777777755555444432 55777787
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-Cchhhh
Q 038622 480 HVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETSM 550 (587)
Q Consensus 480 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~ 550 (587)
.++..+....+ ++.|.+.|.++++. .| ..++|..+...+.+.|.-++-.+++++.....|.. +.|...
T Consensus 822 aia~lfw~e~k-~~kar~Wf~Ravk~--d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~av 891 (913)
T KOG0495|consen 822 AIAKLFWSEKK-IEKAREWFERAVKK--DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAV 891 (913)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHcc--CCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHH
Confidence 88888888888 99999999999984 56 57889999999999999999999999999998876 344433
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-19 Score=171.44 Aligned_cols=567 Identities=13% Similarity=0.080 Sum_probs=340.0
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 038622 2 KLVETAHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQM 81 (587)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 81 (587)
++|..++.+.++.. |.+...|..|...|-..|+.+++...+-.+...+ |.|...|..+.....++|+++.|.-+|.++
T Consensus 156 eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy~rA 233 (895)
T KOG2076|consen 156 EEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCYSRA 233 (895)
T ss_pred HHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 56777777777776 6677777777777777887777777666665554 666777777777777777788888888887
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh----hHHHHHHHHHhcCChHHHHHHHHHHHhCC-C
Q 038622 82 VEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQF----TYNTLVNGLCKVGHVKQALEVMDMMLQEG-F 156 (587)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~ 156 (587)
++.+ |++......-+..|-+.|+...|...|.++.....+.|.. .-...++.+...++.+.|.+.++.....+ -
T Consensus 234 I~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~ 312 (895)
T KOG2076|consen 234 IQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKD 312 (895)
T ss_pred HhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccc
Confidence 7775 4444444455667777788777777777777763211211 12234455566666677777777766521 1
Q ss_pred CCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------------------------CCCChhhHHHHHHHHhccC
Q 038622 157 DPDVFTYNSLISGLCKLGEVEEAVEILNQMILRD---------------------------CSPNTITYNTLISTLCKEN 209 (587)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~l~~~~~~~~ 209 (587)
..+...++.++..+.+...++.+........... .+++..+ ..+.-++.+.+
T Consensus 313 ~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~ 391 (895)
T KOG2076|consen 313 EASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLK 391 (895)
T ss_pred cccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhccc
Confidence 2244566677777777777777777766665411 1111111 12333444444
Q ss_pred CHHHHHHHHHHHHhCC--CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHH
Q 038622 210 QVEEATELARVLTSKG--ILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKL 287 (587)
Q Consensus 210 ~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 287 (587)
..+....+...+.... +..+...+..+..++...|.+..|+.+|..+......-+...|..++++|...|.++.|++.
T Consensus 392 ~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~ 471 (895)
T KOG2076|consen 392 ERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEF 471 (895)
T ss_pred ccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHH
Confidence 4444444444455544 23345667778888888899999999998888775445567888888999889999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038622 288 LKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQ--------GISRNSVTYNTLIDGLCKSRRVEDAAQLMD 359 (587)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 359 (587)
|+.++... |.+..+...|...+.+.|+.++|.+++..+..- ..+|+..........+.+.|+.++=+....
T Consensus 472 y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~ 550 (895)
T KOG2076|consen 472 YEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTAS 550 (895)
T ss_pred HHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 99888775 566677778888888889999888888875421 123333333344445555565554333322
Q ss_pred HHHHcC-----C---------------------------------------------CC-------------CH--hhHH
Q 038622 360 QMIMEG-----L---------------------------------------------KP-------------DK--FTYN 374 (587)
Q Consensus 360 ~~~~~~-----~---------------------------------------------~~-------------~~--~~~~ 374 (587)
.++... + .+ +. ..+.
T Consensus 551 ~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~ 630 (895)
T KOG2076|consen 551 TLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFR 630 (895)
T ss_pred HHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHH
Confidence 222100 0 00 00 0123
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCcc----hHHHHHHHHHhcCChHHHHHHHHHHHHc-CC--CCC-hHhHHH
Q 038622 375 SLLTYYCRAGDIKRAADIVQNMTSNGCE-PDIV----TYGTLIGGLCKAGRVEVASKLLRSIQMK-GI--VLT-PQAYNP 445 (587)
Q Consensus 375 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~--~~~-~~~~~~ 445 (587)
.++.+..+.+.+++|..+...+...... -+.. .-...+.+....+++..|...++.+... +. .|. ...|+.
T Consensus 631 e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~ 710 (895)
T KOG2076|consen 631 ELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNL 710 (895)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 3445566667777777777666654211 1111 1122334445667777777777777654 11 111 234444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHc-
Q 038622 446 VIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPE-FSSFYMLAEGLVS- 523 (587)
Q Consensus 446 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~- 523 (587)
........++-.--.+++..+.......++......+..+...+. +.-|...|-++... .|+ |-.-..+|-++..
T Consensus 711 ~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s-~~~Al~~y~ra~~~--~pd~Pl~nl~lglafih~ 787 (895)
T KOG2076|consen 711 DFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNAS-FKHALQEYMRAFRQ--NPDSPLINLCLGLAFIHL 787 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccc-hHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHHH
Confidence 444444444433333334333332111112222233344455666 88888888888774 453 4444444444332
Q ss_pred -c--------CCHhHHHHHHHHHHhcCCC---CCchhhhhhhHHHHHHHHHHHHhcchhhhccCc
Q 038622 524 -L--------GKEETLVELIDMVMDKAKF---SDRETSMVRGFLKIRKFQDALATFGDILDSRMP 576 (587)
Q Consensus 524 -~--------g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 576 (587)
+ -..-.+...+++..+.... .++.+.++++|-+.|-..=|+.+|+++++..|+
T Consensus 788 a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~ 852 (895)
T KOG2076|consen 788 ALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPK 852 (895)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCcc
Confidence 1 1233455566655554433 356788889999999999999999999887643
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-19 Score=179.59 Aligned_cols=466 Identities=13% Similarity=0.087 Sum_probs=311.7
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038622 22 TFNILIKALCKAHQIRPAILMMEEMPGYGLAPDE-RTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGF 100 (587)
Q Consensus 22 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (587)
+...-+-...+.|++..|+..|+++.+.. |.++ .++ .++..+...|+.++|+..++++.... +.+......++..+
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly 112 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKAG-PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAY 112 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhC-ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHH
Confidence 33344455688999999999999999875 3342 344 88888889999999999999998321 33344444557789
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHH
Q 038622 101 CKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAV 180 (587)
Q Consensus 101 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 180 (587)
...|++++|+++|+++++.. |.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|+
T Consensus 113 ~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL 189 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDAL 189 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHH
Confidence 99999999999999999984 556677888889999999999999999999886 455445544444454567776799
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038622 181 EILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKG 260 (587)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 260 (587)
+.++++...+ |.+...+..+..++.+.|-...|.++..+-... +. ......+ +.+.+.+..+...
T Consensus 190 ~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~--~~~~~~l--------~~~~~a~~vr~a~--- 254 (822)
T PRK14574 190 QASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VS--AEHYRQL--------ERDAAAEQVRMAV--- 254 (822)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cC--HHHHHHH--------HHHHHHHHHhhcc---
Confidence 9999999986 667888899999999999999999877653321 11 1111111 1112222221111
Q ss_pred CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHC--CCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC
Q 038622 261 CQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESS--GCARNV----VTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRN 334 (587)
Q Consensus 261 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 334 (587)
.++..- -. +-.-.+.|+.-++.+... ..|+.. .+....+-++...|++.++++.|+.+...+.+..
T Consensus 255 -~~~~~~----~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P 326 (822)
T PRK14574 255 -LPTRSE----TE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMP 326 (822)
T ss_pred -cccccc----hh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCC
Confidence 111000 00 000123444444444431 112111 1222344456667777777777777776654444
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--------
Q 038622 335 SVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGL-----KPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGC-------- 401 (587)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------- 401 (587)
..+-..++.+|...+++++|..+|+.+..... .++......|.-++...+++++|..+++.+.+..+
T Consensus 327 ~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~ 406 (822)
T PRK14574 327 DYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGL 406 (822)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCC
Confidence 55666677777777777777777777765321 12233345667777777777777777777776311
Q ss_pred ---CCCc---chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH
Q 038622 402 ---EPDI---VTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDA 475 (587)
Q Consensus 402 ---~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 475 (587)
.|+. .....++..+...|+..+|.+.++++....+. |...+..++..+...|.+.+|...++.+...+ |.+.
T Consensus 407 ~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~ 484 (822)
T PRK14574 407 PGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSL 484 (822)
T ss_pred CCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccH
Confidence 1221 13344567778889999999999999886554 77888899999999999999999998777753 5556
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038622 476 LTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGL 521 (587)
Q Consensus 476 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 521 (587)
......+.+....++ +++|......+++ ..|+......|.+..
T Consensus 485 ~~~~~~~~~al~l~e-~~~A~~~~~~l~~--~~Pe~~~~~~l~r~~ 527 (822)
T PRK14574 485 ILERAQAETAMALQE-WHQMELLTDDVIS--RSPEDIPSQELDRQR 527 (822)
T ss_pred HHHHHHHHHHHhhhh-HHHHHHHHHHHHh--hCCCchhHHHHHHHH
Confidence 666677777788888 9999999999887 357544444454433
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.3e-19 Score=167.22 Aligned_cols=557 Identities=16% Similarity=0.128 Sum_probs=391.0
Q ss_pred CCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHH
Q 038622 17 KPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVL 96 (587)
Q Consensus 17 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 96 (587)
+|.....-...+.+...|++++|..++.++++.. |.++..|..++..|-..|+.+++...+-.+...+ |.+...|..+
T Consensus 136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~l 213 (895)
T KOG2076|consen 136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRL 213 (895)
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHH
Confidence 3334444455566777899999999999999987 8899999999999999999999999998888776 6677999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc----ccHHHHHHHHHh
Q 038622 97 VHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDV----FTYNSLISGLCK 172 (587)
Q Consensus 97 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~ 172 (587)
.....+.|.++.|.-.|.++++.. |++......-+..|-+.|+...|.+.|.++.+..++.|. .....++..+..
T Consensus 214 adls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~ 292 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFIT 292 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999985 666667777788999999999999999999987432222 233445666777
Q ss_pred cCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCC------------------------
Q 038622 173 LGEVEEAVEILNQMILRD-CSPNTITYNTLISTLCKENQVEEATELARVLTSKGIL------------------------ 227 (587)
Q Consensus 173 ~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------------------ 227 (587)
.++-+.|.+.++...... -..+...++.++..+.+..+++.+.............
T Consensus 293 ~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~ 372 (895)
T KOG2076|consen 293 HNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGK 372 (895)
T ss_pred hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCC
Confidence 888899999999888731 1335556788899999999999998877766552111
Q ss_pred ---CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHH
Q 038622 228 ---PDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKG--CQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVT 302 (587)
Q Consensus 228 ---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 302 (587)
++..+ ..+.-++......+....+........ +..+...+..++.++...|++.+|+.+|..+.....-.+...
T Consensus 373 ~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~v 451 (895)
T KOG2076|consen 373 ELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFV 451 (895)
T ss_pred CCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhh
Confidence 12222 123334444554444444555555554 333467899999999999999999999999998765566779
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------cCCCCCHhhHH
Q 038622 303 YNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIM--------EGLKPDKFTYN 374 (587)
Q Consensus 303 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~ 374 (587)
|..++.+|...|.++.|.+.|..++... |.+...-..+...+.+.|+.++|.+.+..+.. .+..|+.....
T Consensus 452 w~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~ 530 (895)
T KOG2076|consen 452 WYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILA 530 (895)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHH
Confidence 9999999999999999999999998875 66777788889999999999999999998652 22344555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-----CCC-----------------CcchHHHHHHHHHhcCChHHHHHHHHH--
Q 038622 375 SLLTYYCRAGDIKRAADIVQNMTSNG-----CEP-----------------DIVTYGTLIGGLCKAGRVEVASKLLRS-- 430 (587)
Q Consensus 375 ~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~-----------------~~~~~~~l~~~~~~~~~~~~a~~~~~~-- 430 (587)
.....+...|+.++=+.+...++... +-| .......+..+-.+.++.....+-+..
T Consensus 531 ~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~ 610 (895)
T KOG2076|consen 531 HRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGT 610 (895)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchh
Confidence 66677788888877555544443211 111 111222333333333332222211111
Q ss_pred ----HHHcCCCCCh--HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCHH---HHHH-HHHHHHhCCCCHHHHHHHH
Q 038622 431 ----IQMKGIVLTP--QAYNPVIQALFRRKRTTEAMRLFREMMEKAD-PPDAL---TYKH-VFRGLCNGGGPIGEAVDFV 499 (587)
Q Consensus 431 ----~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~---~~~~-l~~~~~~~~~~~~~A~~~~ 499 (587)
....+...+. ..+..++.++.+.+++++|..+...+..... ..+.. .+.. .+.+....++ +..|..++
T Consensus 611 ~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d-~~~a~~~l 689 (895)
T KOG2076|consen 611 EFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARD-PGDAFSYL 689 (895)
T ss_pred hhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCC-HHHHHHHH
Confidence 1111222111 2345667788899999999999998887532 12222 2333 3344556666 99999999
Q ss_pred HHHHHc-C--CCCC-HHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc--hhhhhhhHHHHHHHHHHHHhcchhhhc
Q 038622 500 IEMLER-G--FLPE-FSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR--ETSMVRGFLKIRKFQDALATFGDILDS 573 (587)
Q Consensus 500 ~~~~~~-~--~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~A~~~~~~~~~~ 573 (587)
+.++.. + ..|. ...|....+...+.|+-.--.+.+..+...++++.. ....+..++..+.+..|+..|-++...
T Consensus 690 R~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~ 769 (895)
T KOG2076|consen 690 RSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ 769 (895)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHh
Confidence 999853 1 1232 223333555566677766667777777777776633 333444566788899999999988888
Q ss_pred cCchhh
Q 038622 574 RMPRKT 579 (587)
Q Consensus 574 ~~~~~~ 579 (587)
.|..+-
T Consensus 770 ~pd~Pl 775 (895)
T KOG2076|consen 770 NPDSPL 775 (895)
T ss_pred CCCCcH
Confidence 876443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-21 Score=186.96 Aligned_cols=303 Identities=15% Similarity=0.108 Sum_probs=187.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhc
Q 038622 62 MQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPD---QFTYNTLVNGLCKV 138 (587)
Q Consensus 62 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 138 (587)
+..+...|++++|...|+++.+.+ |.+..++..++..+...|++++|..+++.+...+..++ ...+..++..|...
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 444556666666666666666654 34455566666666666666666666666665321111 13455666666666
Q ss_pred CChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHhccCCHHHH
Q 038622 139 GHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPN----TITYNTLISTLCKENQVEEA 214 (587)
Q Consensus 139 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a 214 (587)
|++++|..+|+++.+.. +++..++..++..+...|++++|++.++.+...+..+. ...+..++..+...|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 66777766666666542 23455566666666666777777776666665432211 11344566666677777777
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHC
Q 038622 215 TELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESS 294 (587)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 294 (587)
...++++.+.. +.+...+..++..+...|++++|.++++++...+......++..++.++...|++++|...++++.+.
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777766543 22445566666777777777777777777766531112345666777777777777777777777665
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHh
Q 038622 295 GCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCK---SRRVEDAAQLMDQMIMEGLKPDKF 371 (587)
Q Consensus 295 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~ 371 (587)
. |+...+..++..+.+.|++++|..+++++... .|+...+..++..+.. .|+.+++..+++++.+.++.|++.
T Consensus 279 ~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 Y--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred C--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 3 44445566777777777788887777777665 3555566655655543 446777777777777655555544
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-21 Score=185.07 Aligned_cols=194 Identities=14% Similarity=0.114 Sum_probs=86.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHhc
Q 038622 167 ISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPD---VCTFNSLIQGLCLT 243 (587)
Q Consensus 167 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 243 (587)
+..+...|++++|+..|.++...+ +.+..++..++..+...|++++|..+++.+...+..++ ...+..++..+...
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 334445555555555555555543 23444455555555555555555555555544321111 12334444555555
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCHHHH
Q 038622 244 SNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARN----VVTYNTLIDGFCKLKRIEEA 319 (587)
Q Consensus 244 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a 319 (587)
|++++|..+|+++.+.. +.+..++..++..+...|++++|++.++.+.+.+..+. ...+..++..+...|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 55555555555554432 23344445555555555555555555555544321110 01122333334444444444
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038622 320 EEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIM 363 (587)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 363 (587)
...++++.+.. +.+...+..++..+.+.|++++|...++++..
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 242 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEE 242 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44444444332 22233333344444444444444444444443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.9e-18 Score=147.70 Aligned_cols=484 Identities=12% Similarity=0.048 Sum_probs=372.6
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 038622 41 LMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEG 120 (587)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 120 (587)
+-|+.-++.+ ..+...|...+.--..++++..|..+|++++..+ ..+...|...+.+-.+...+..|..++++++..
T Consensus 60 kefEd~irrn-R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~- 136 (677)
T KOG1915|consen 60 KEFEDQIRRN-RLNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI- 136 (677)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-
Confidence 4555555554 5677788888888889999999999999999886 567788999999999999999999999999986
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 038622 121 FNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNT 200 (587)
Q Consensus 121 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 200 (587)
+|.-...|...+..--..|++..|.++|+.-..- .|+..+|.+.+..-.+.+.++.|..+|+..+-. .|+...|..
T Consensus 137 lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wik 212 (677)
T KOG1915|consen 137 LPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIK 212 (677)
T ss_pred cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHH
Confidence 3555567888888888899999999999999885 899999999999999999999999999999876 589999999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhC-CC-CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHhHHHHHHHHH
Q 038622 201 LISTLCKENQVEEATELARVLTSK-GI-LPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPD--EFTYNMLIDSLC 276 (587)
Q Consensus 201 l~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~ 276 (587)
.+..-.+.|+...+..+|+...+. |. ..+...+.+....-..+..++.|.-+|+-.+..- |.+ ...|..+...--
T Consensus 213 yarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEK 291 (677)
T KOG1915|consen 213 YARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEK 291 (677)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHH
Confidence 999999999999999999988764 11 1122334444444456778899999999888762 333 344555554444
Q ss_pred ccCChHHHHHH--------HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHH--
Q 038622 277 SRGMLEEALKL--------LKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSV--TYNTLIDG-- 344 (587)
Q Consensus 277 ~~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~-- 344 (587)
+-|+.....+. |+...+.+ |.+-.+|...+..-...|+.+...++|+++...- ||-.. .|...+..
T Consensus 292 qfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWi 369 (677)
T KOG1915|consen 292 QFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWI 369 (677)
T ss_pred HhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHH
Confidence 55655433322 44455544 6788889999999999999999999999998653 55321 22222211
Q ss_pred ------HHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHH----HHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 038622 345 ------LCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSL----LTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGG 414 (587)
Q Consensus 345 ------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 414 (587)
-....+.+.+.++|+.+++. ++....|+..+ +....++.+...|.+++..++. ..|...++...+..
T Consensus 370 nYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIel 446 (677)
T KOG1915|consen 370 NYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIEL 446 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHH
Confidence 13568999999999999984 44344454443 4445688899999999998874 67888899999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhCCCCHH
Q 038622 415 LCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKAD-PPDALTYKHVFRGLCNGGGPIG 493 (587)
Q Consensus 415 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 493 (587)
-.+.++++...+++++.++.++. +..+|...+..-...|+.+.|..+|+-+++... .-....|...+..-...|. ++
T Consensus 447 ElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E-~e 524 (677)
T KOG1915|consen 447 ELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGE-FE 524 (677)
T ss_pred HHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcch-HH
Confidence 99999999999999999997655 678999999999999999999999999998531 1223456677777778888 99
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHH-----ccC-----------CHhHHHHHHHHHHhcC
Q 038622 494 EAVDFVIEMLERGFLPEFSSFYMLAEGLV-----SLG-----------KEETLVELIDMVMDKA 541 (587)
Q Consensus 494 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~~~ 541 (587)
.|..+|+++++. .+...+|...+..-. +.| ....|+.+|+++...-
T Consensus 525 kaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~ 586 (677)
T KOG1915|consen 525 KARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYL 586 (677)
T ss_pred HHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHH
Confidence 999999999984 355556666655443 344 5678899998886543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.3e-19 Score=153.73 Aligned_cols=279 Identities=11% Similarity=0.058 Sum_probs=161.6
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH--ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 038622 239 GLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLC--SRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRI 316 (587)
Q Consensus 239 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 316 (587)
.+.+.|+++.|+++++-+.+.+-......-+.+...+. ...++..|.++-+.++..+ ..+..+...-+......|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 35667777777777766655432222222233322222 2335556666655555443 33444444444445556777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 038622 317 EEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNM 396 (587)
Q Consensus 317 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 396 (587)
++|.+.|.+.+..+.. -......+.-.+...|+.++|+..|-++..- +..+..++..+...|--..+..+|++++.+.
T Consensus 507 dka~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 7777777776654311 2223333444455667777777777665442 2335566666667777777777777777666
Q ss_pred HHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH
Q 038622 397 TSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDAL 476 (587)
Q Consensus 397 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 476 (587)
... ++.++.++..|+..|-+.|+-..|..+.-.--.. ++-+.++...++..|....-+++|+.+|+++.- +.|+..
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~ 660 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQS 660 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHH
Confidence 553 3335666677777777777777776654333322 333455666666666666677777777777655 466766
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 038622 477 TYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLG 525 (587)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 525 (587)
-|..++..|.+...++..|.++|+...++ ++.+.+.+.-|.+++-..|
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence 67666665554433377777777776653 3446666666666666655
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-19 Score=158.35 Aligned_cols=475 Identities=15% Similarity=0.108 Sum_probs=340.4
Q ss_pred CCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh----
Q 038622 17 KPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERT-FTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNV---- 91 (587)
Q Consensus 17 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---- 91 (587)
..+-.+...|.+-|....-..+|...|+-+.+...-||.-. -..+...+.+..++.+|++.|+-++..-+..+..
T Consensus 198 dltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rik 277 (840)
T KOG2003|consen 198 DLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIK 277 (840)
T ss_pred cchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHH
Confidence 34445666777778888888999999999988766666543 4567788999999999999999888764333333
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcc--------cH
Q 038622 92 TVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVF--------TY 163 (587)
Q Consensus 92 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~ 163 (587)
+.+.+...+.+.|++++|+..|+...+. .|+..+-..++-++...|+.++..+.|.+++.....||.. ..
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~ 355 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPD 355 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence 3455555788999999999999999886 6777776667777778899999999999998743222211 12
Q ss_pred HHHHHHHHh---------cC--CHHHHHHHHHHHHhCCCCCCh---------------------hhHHHHHHHHhccCCH
Q 038622 164 NSLISGLCK---------LG--EVEEAVEILNQMILRDCSPNT---------------------ITYNTLISTLCKENQV 211 (587)
Q Consensus 164 ~~l~~~~~~---------~g--~~~~a~~~~~~~~~~~~~~~~---------------------~~~~~l~~~~~~~~~~ 211 (587)
..++.-..+ .+ +.++++-.--+++.--+.|+- ..-..-+..+.+.|++
T Consensus 356 ~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 356 DNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDI 435 (840)
T ss_pred hHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence 222222222 11 122222111112111111110 0111223457789999
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHH
Q 038622 212 EEATELARVLTSKGILPDVCTFNSLIQGLCL--TSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLK 289 (587)
Q Consensus 212 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 289 (587)
+.|+++++.+.+..-......-+.+-..+.. -.++..|.++-+..+..+ +-++.....-+......|++++|.+.|+
T Consensus 436 ~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~yk 514 (840)
T KOG2003|consen 436 EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYK 514 (840)
T ss_pred HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHH
Confidence 9999999988776433222333333222333 347888888888777654 4566666666666677899999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 038622 290 EMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPD 369 (587)
Q Consensus 290 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 369 (587)
+++..+ ..-..++..++-.+-..|+.++|++.|-++...- ..+..+...+...|....+...|++++.++... ++.|
T Consensus 515 eal~nd-asc~ealfniglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~d 591 (840)
T KOG2003|consen 515 EALNND-ASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPND 591 (840)
T ss_pred HHHcCc-hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCC
Confidence 999865 2334455566777888999999999998764431 346778888999999999999999999998775 5668
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHH-
Q 038622 370 KFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQ- 448 (587)
Q Consensus 370 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~- 448 (587)
+..+..|...|-+.|+-.+|.+.+-.--+. ++-+.++...|+..|....-+++++.+|+++.- +.|+..-|..++.
T Consensus 592 p~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmias 668 (840)
T KOG2003|consen 592 PAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIAS 668 (840)
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHH
Confidence 889999999999999999999887665554 334788888999999999999999999999877 7889988887665
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 038622 449 ALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEML 503 (587)
Q Consensus 449 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~ 503 (587)
++.+.|++++|..+|+...++ +|.+...+..++..+...|- .++.++-.++.
T Consensus 669 c~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl--~d~key~~kle 720 (840)
T KOG2003|consen 669 CFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL--KDAKEYADKLE 720 (840)
T ss_pred HHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc--hhHHHHHHHHH
Confidence 556789999999999999887 68888999999988888874 56665555443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-16 Score=142.07 Aligned_cols=511 Identities=12% Similarity=0.054 Sum_probs=321.0
Q ss_pred CHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038622 19 DVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVH 98 (587)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 98 (587)
+..-+..+++-+..+.++..|.-+-++....+ .||....-+++++.-.|++.+|..+...-.-. ..+.......+.
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~ 90 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK 90 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence 34555555666666666666666666655443 44555555566666666666665555443221 234444555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHH
Q 038622 99 GFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEE 178 (587)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 178 (587)
++.+..++++|..++..... ..+...+..--. ...-..+.+. .. .++......+..-...|....+.++
T Consensus 91 ~l~~lk~~~~al~vl~~~~~---~~~~f~yy~~~~--~~~l~~n~~~----~~--~~~~~essic~lRgk~y~al~n~~~ 159 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHV---ETNPFSYYEKDA--ANTLELNSAG----ED--LMINLESSICYLRGKVYVALDNREE 159 (611)
T ss_pred HHHHHHHHHHHHHHhcccch---hhcchhhcchhh--hceeccCccc----cc--ccccchhceeeeeeehhhhhccHHH
Confidence 66666666666665553210 001100000000 0000000111 00 0011122222333445666677888
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 038622 179 AVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSK-GILPDVCTFNSLIQGLCLTSNFDVAMELFQEMK 257 (587)
Q Consensus 179 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 257 (587)
|...|.++...+.. +-+.+..++....-.. ++...+++.+--. ....+......+.........-+.....-.+..
T Consensus 160 ar~~Y~~Al~~D~~-c~Ea~~~lvs~~mlt~--~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~s 236 (611)
T KOG1173|consen 160 ARDKYKEALLADAK-CFEAFEKLVSAHMLTA--QEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDES 236 (611)
T ss_pred HHHHHHHHHhcchh-hHHHHHHHHHHHhcch--hHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhh
Confidence 88888887766422 3333333333322211 1112222110000 000111111112111100000001110011011
Q ss_pred HcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH
Q 038622 258 TKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVT 337 (587)
Q Consensus 258 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 337 (587)
-.+...+.......+.-+...+++.+..++.+.+.+.. |+....+..-+.++...|+..+-..+-.++.+.. |..+.+
T Consensus 237 l~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~s 314 (611)
T KOG1173|consen 237 LIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALS 314 (611)
T ss_pred hhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcc
Confidence 11224466677777888888999999999999998876 6666666666668888888877777777777664 777889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHH
Q 038622 338 YNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPD-KFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLC 416 (587)
Q Consensus 338 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 416 (587)
|..++--|...|+..+|.+.|.++... .|. ...|..++..+...|..++|...|..+.+. ++-....+..++.-|.
T Consensus 315 W~aVg~YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~ 391 (611)
T KOG1173|consen 315 WFAVGCYYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYM 391 (611)
T ss_pred hhhHHHHHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHH
Confidence 999999999999999999999999874 333 347889999999999999999999988875 2224455666777888
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCCCHHHHHHHHHHHHhCCC
Q 038622 417 KAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEK------ADPPDALTYKHVFRGLCNGGG 490 (587)
Q Consensus 417 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~ 490 (587)
+.++.+.|.++|.++....+. ++...+.++......+.+.+|..+|+..+.. ..+.-..+++.++.++.+.+.
T Consensus 392 ~t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~ 470 (611)
T KOG1173|consen 392 RTNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK 470 (611)
T ss_pred HhccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh
Confidence 999999999999999886433 6778889999999999999999999999842 111234568889999999999
Q ss_pred CHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCchhhhhhhHHH
Q 038622 491 PIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDRETSMVRGFLK 556 (587)
Q Consensus 491 ~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (587)
+++|+..+++++.. .| +..++..+|-+|...|+++.|++.|.+++-..|.+.....+....+.
T Consensus 471 -~~eAI~~~q~aL~l--~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 471 -YEEAIDYYQKALLL--SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred -HHHHHHHHHHHHHc--CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 99999999999984 45 89999999999999999999999999999999998766655544433
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-17 Score=146.37 Aligned_cols=218 Identities=15% Similarity=0.055 Sum_probs=118.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHH
Q 038622 347 KSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASK 426 (587)
Q Consensus 347 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 426 (587)
-.|+.-.|..-|+.++.....+ ...|-.+..+|....+.++-...|..+.+.++. ++.+|..-++++.-.+++++|..
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHH
Confidence 3455556666666666542221 112444555566666666666666666554433 45556666666666666666666
Q ss_pred HHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 038622 427 LLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERG 506 (587)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 506 (587)
-|++....++. +...+..+..+..+.++++++...|++..++ +|.-+..++..+..+..+++ ++.|.+.|..+++
T Consensus 416 DF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqq-Fd~A~k~YD~ai~-- 490 (606)
T KOG0547|consen 416 DFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQ-FDKAVKQYDKAIE-- 490 (606)
T ss_pred HHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHh-HHHHHHHHHHHHh--
Confidence 66666653322 3345555555556666666666666666655 35555556666666666666 6666666666665
Q ss_pred CCCC-------HHHHH--HHHHHHHccCCHhHHHHHHHHHHhcCCCCCc-hhhhhhhHHHHHHHHHHHHhcchhhh
Q 038622 507 FLPE-------FSSFY--MLAEGLVSLGKEETLVELIDMVMDKAKFSDR-ETSMVRGFLKIRKFQDALATFGDILD 572 (587)
Q Consensus 507 ~~p~-------~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~A~~~~~~~~~ 572 (587)
+.|+ +..+. .++..-+ .+++..|..+++++++.+|..+. ..+++...+++|+.++|+.+|++...
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2332 11111 1111112 25666666666666666666543 45566666666666666666665543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5e-16 Score=136.56 Aligned_cols=368 Identities=10% Similarity=0.037 Sum_probs=244.1
Q ss_pred CCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhH--H
Q 038622 157 DPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTF--N 234 (587)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~ 234 (587)
..|...+...+..+...|..+.|+..|...+..- |..-.+|..|..... +. +....+... .+.+.... .
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~lit---~~----e~~~~l~~~-l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELIT---DI----EILSILVVG-LPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhhc---hH----HHHHHHHhc-CcccchHHHHH
Confidence 3354455555566667788888888888777653 444445555444332 11 122222211 12121111 2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHH
Q 038622 235 SLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARN---VVTYNTLIDGFC 311 (587)
Q Consensus 235 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~ 311 (587)
.+..++....+.+++..-.+.....|++.+...-...+.+.....++++|+..|+++.+.+ |-. ..+|..++- .
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD-PYRl~dmdlySN~LY--v 308 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND-PYRLDDMDLYSNVLY--V 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcchhHHHHhHHHH--H
Confidence 2344555556777888777777777777666666667777778888888888888888764 333 333433332 2
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 038622 312 KLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAAD 391 (587)
Q Consensus 312 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 391 (587)
+. +-. .+..+.+-...-..-.+.+...++.-|.-.++.++|...|+++++.+. .....|+.++.-|....+...|++
T Consensus 309 ~~-~~s-kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 309 KN-DKS-KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred Hh-hhH-HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHH
Confidence 22 211 122222111111123445666677777777888888888888888532 245578888888888888888888
Q ss_pred HHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 038622 392 IVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKAD 471 (587)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 471 (587)
-|+.+++.++. |...|..|+++|.-.+-+.-|+-+|+++....+. |+..|..++.+|.+.++.++|++.|.++...|
T Consensus 386 sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~- 462 (559)
T KOG1155|consen 386 SYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG- 462 (559)
T ss_pred HHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-
Confidence 88888886544 7778888888888888888888888888885333 56888888888888888888888888888865
Q ss_pred CCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----CCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCC
Q 038622 472 PPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERG-----FLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKF 543 (587)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~-----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 543 (587)
..+...+..++..+-+.++ ..+|..+|++.++.. +.| ...+...|+.-+.+.+++++|..+...+..-++.
T Consensus 463 dte~~~l~~LakLye~l~d-~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e 539 (559)
T KOG1155|consen 463 DTEGSALVRLAKLYEELKD-LNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETE 539 (559)
T ss_pred ccchHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCch
Confidence 4466778888888888888 888888888877521 233 3455566778888888888888888887776444
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.7e-17 Score=144.46 Aligned_cols=425 Identities=13% Similarity=0.036 Sum_probs=241.3
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHhhccCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038622 22 TFNILIKALCKAHQIRPAILMMEEMPGYGLAPD-ERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGF 100 (587)
Q Consensus 22 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (587)
.+....+-|.+.|++++|++.|..++.. .|+ +.-|.....+|...|+++.+.+-..++++.+ |....++..-..++
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAH 193 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHH
Confidence 4455667788888888888888888876 566 6677778888888888888888888888775 44555666667777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh-CC--CCCCcccHHHHHHHHHhcCCHH
Q 038622 101 CKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQ-EG--FDPDVFTYNSLISGLCKLGEVE 177 (587)
Q Consensus 101 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~--~~~~~~~~~~l~~~~~~~g~~~ 177 (587)
-..|++++|+.=..-..-.+.-.+..+-..+=+.+-+ .|..-..+-.. .+ +-|+..........+... ..
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~--~~ 266 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD--PK 266 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc--cc
Confidence 7778877776433322211111111111111111111 22222222222 11 122222222222221110 00
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHhc-cCCHHHHHHHHHHHHhC---CCCCC---------HhhHHHHHHHHHhcC
Q 038622 178 EAVEILNQMILRDCSPNTITYNTLISTLCK-ENQVEEATELARVLTSK---GILPD---------VCTFNSLIQGLCLTS 244 (587)
Q Consensus 178 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~---~~~~~---------~~~~~~l~~~~~~~~ 244 (587)
. .+...+...+...-..+-..+.. ...+..+.+.+.+-... ....+ ..++......+.-.|
T Consensus 267 ~------~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g 340 (606)
T KOG0547|consen 267 P------LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKG 340 (606)
T ss_pred c------cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcC
Confidence 0 00000000000000000000000 01233333332221110 00001 122233333455667
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 038622 245 NFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFD 324 (587)
Q Consensus 245 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 324 (587)
+.-.|..-|+..+... +.+...|..++..|...++.++....|..+.+.+ |.++.+|..-++.+.-.+++++|..-|+
T Consensus 341 ~~~~a~~d~~~~I~l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~ 418 (606)
T KOG0547|consen 341 DSLGAQEDFDAAIKLD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQ 418 (606)
T ss_pred CchhhhhhHHHHHhcC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHH
Confidence 7788888888887775 3333347777777888888888888888887776 6667777777887777888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--
Q 038622 325 EMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCE-- 402 (587)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-- 402 (587)
+....+ |.+...|..+.-+..+.++++++...|++.... ++..+..|+...+.+..++++++|.+.|+..++....
T Consensus 419 Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~ 496 (606)
T KOG0547|consen 419 KAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREH 496 (606)
T ss_pred HHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccc
Confidence 877765 556666766776777777888888888888775 4556677888888888888888888888877764211
Q ss_pred ---CCcchH--HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038622 403 ---PDIVTY--GTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMME 468 (587)
Q Consensus 403 ---~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (587)
.+...+ ..++..- -.+++..|..+++++.+.++. ...++..|+.....+|+.++|+++|++...
T Consensus 497 ~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 497 LIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 011111 1111111 236777777777777775443 446777777777777777777777777765
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.2e-18 Score=156.07 Aligned_cols=290 Identities=16% Similarity=0.087 Sum_probs=235.8
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHH
Q 038622 279 GMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGI--SRNSVTYNTLIDGLCKSRRVEDAAQ 356 (587)
Q Consensus 279 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~ 356 (587)
-+..+|+..|..+... +.....+...++.+|...+++++|.++|+.+.+... -.+..+|...+..+.+ +-++.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence 3567899999995544 355567788899999999999999999999977641 1245666666654422 22333
Q ss_pred HHH-HHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038622 357 LMD-QMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKG 435 (587)
Q Consensus 357 ~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 435 (587)
.+. .++.. -+..+.+|..++.+|.-+++.+.|++.|++++..++. ...+|..++.=+....++|.|...|+.++..+
T Consensus 408 ~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 408 YLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 333 33332 3446789999999999999999999999999985432 57788888888888999999999999998854
Q ss_pred CCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHH
Q 038622 436 IVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSF 514 (587)
Q Consensus 436 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~ 514 (587)
+. +-.+|..++..|.++++++.|.-.|+++++.+ |.+......++..+.+.|+ .++|+.+++++.. ++| ++-..
T Consensus 486 ~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~-~d~AL~~~~~A~~--ld~kn~l~~ 560 (638)
T KOG1126|consen 486 PR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKR-KDKALQLYEKAIH--LDPKNPLCK 560 (638)
T ss_pred ch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhh-hhHHHHHHHHHHh--cCCCCchhH
Confidence 33 45789999999999999999999999999965 6666777778888888999 9999999999998 456 88888
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc-hhhhhhhHHHHHHHHHHHHhcchhhhccCchhhh
Q 038622 515 YMLAEGLVSLGKEETLVELIDMVMDKAKFSDR-ETSMVRGFLKIRKFQDALATFGDILDSRMPRKTF 580 (587)
Q Consensus 515 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 580 (587)
+..+.++...+++++|...++++.+.-|+... ...++.+|.+.|+.+.|+..|.=+.+-.|+..++
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~i 627 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQI 627 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccchh
Confidence 99999999999999999999999999998754 7888899999999999999999999988887763
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.6e-15 Score=135.64 Aligned_cols=473 Identities=13% Similarity=0.036 Sum_probs=263.9
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 038622 10 DMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVT 89 (587)
Q Consensus 10 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 89 (587)
.....+..|+..- -+++++.-.|++.+|..+...-.-. ..|.......+..+.+..++++|..++..... ..+
T Consensus 41 kV~~l~~dp~d~~--~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~---~~~ 113 (611)
T KOG1173|consen 41 KVAGLTNDPADIY--WLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVKLKEWDQALLVLGRGHV---ETN 113 (611)
T ss_pred HHHhccCChHHHH--HHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHhcccch---hhc
Confidence 3333333444333 4668888889999998877654322 45777788888888899999999988773311 001
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHH---H
Q 038622 90 NVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNS---L 166 (587)
Q Consensus 90 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l 166 (587)
+..+..-- + ...-+.+.+. +... ..........-...|....++++|...|.++... |...+.. +
T Consensus 114 ~f~yy~~~-~-~~~l~~n~~~----~~~~--~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~----D~~c~Ea~~~l 181 (611)
T KOG1173|consen 114 PFSYYEKD-A-ANTLELNSAG----EDLM--INLESSICYLRGKVYVALDNREEARDKYKEALLA----DAKCFEAFEKL 181 (611)
T ss_pred chhhcchh-h-hceeccCccc----cccc--ccchhceeeeeeehhhhhccHHHHHHHHHHHHhc----chhhHHHHHHH
Confidence 11110000 0 0000000111 0000 0111222233344455555666666666666543 2222221 1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC----CCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 038622 167 ISGLCKLGEVEEAVEILNQMILRDC----SPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCL 242 (587)
Q Consensus 167 ~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 242 (587)
+....- .+.+.++.+...+. ..+......+.....-...-+.....-....-.+...+.........-+..
T Consensus 182 vs~~ml-----t~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~ 256 (611)
T KOG1173|consen 182 VSAHML-----TAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYY 256 (611)
T ss_pred HHHHhc-----chhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHH
Confidence 111111 11111111111100 001111111111110000000000000000011123355555556666677
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 038622 243 TSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEI 322 (587)
Q Consensus 243 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 322 (587)
.+++.+..++.+.+.+.. ++....+-.-+.++...|+..+-..+=.++.+.- |..+.+|..++.-|...|++.+|.+.
T Consensus 257 ~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry 334 (611)
T KOG1173|consen 257 GCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRY 334 (611)
T ss_pred cChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHH
Confidence 777888888887777664 5566666555667777777776666666666653 56667777777777777888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 038622 323 FDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCE 402 (587)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 402 (587)
|.+....+ +.-...|...+..|.-.+..++|+..|..+.+. .+-....+..++--|.+.++.+.|.++|..+....+
T Consensus 335 ~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P- 411 (611)
T KOG1173|consen 335 FSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAP- 411 (611)
T ss_pred HHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCC-
Confidence 87776554 334456777777777777888888877777663 111222233444556777788888888877776422
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC--CChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH
Q 038622 403 PDIVTYGTLIGGLCKAGRVEVASKLLRSIQMK----GIV--LTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDAL 476 (587)
Q Consensus 403 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 476 (587)
.|+..++.++-.....+.+.+|..+|+..+.. +.. .-..+++.++.++.+.+.+++|+..+++++... +.+..
T Consensus 412 ~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~ 490 (611)
T KOG1173|consen 412 SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDAS 490 (611)
T ss_pred CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchh
Confidence 25556666766666777888888888776632 100 122457788888888888888888888888764 67777
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 038622 477 TYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFY 515 (587)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~ 515 (587)
++..++..+...|+ ++.|++.|.+++- +.|+.....
T Consensus 491 ~~asig~iy~llgn-ld~Aid~fhKaL~--l~p~n~~~~ 526 (611)
T KOG1173|consen 491 THASIGYIYHLLGN-LDKAIDHFHKALA--LKPDNIFIS 526 (611)
T ss_pred HHHHHHHHHHHhcC-hHHHHHHHHHHHh--cCCccHHHH
Confidence 77777777888888 8888888888886 567554443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-17 Score=153.30 Aligned_cols=287 Identities=15% Similarity=0.130 Sum_probs=234.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCCHHHHHHH
Q 038622 245 NFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGC--ARNVVTYNTLIDGFCKLKRIEEAEEI 322 (587)
Q Consensus 245 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 322 (587)
+..+|...|..+... +.-.......++++|...+++++|.++|+.+.+... -.+...|...+..+- + +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~-~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---D-EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---h-hHHHHH
Confidence 568899999985544 344456777899999999999999999999987640 123445555544322 2 223333
Q ss_pred HH-HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 038622 323 FD-EMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKP-DKFTYNSLLTYYCRAGDIKRAADIVQNMTSNG 400 (587)
Q Consensus 323 ~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 400 (587)
+. .+... .+..+.+|..++.+|.-+++.+.|++.|+++++. .| ...+|+.++.-+.....++.|...|+.++..+
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 33 33333 3778899999999999999999999999999984 55 56789999988999999999999999998754
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 038622 401 CEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKH 480 (587)
Q Consensus 401 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 480 (587)
.+ +..+|..++..|.++++++.|.-.|+++.+.++. +......++..+.+.|+.++|+.+++++...+ +.++..-..
T Consensus 486 ~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYH 562 (638)
T ss_pred ch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHH
Confidence 33 5567888999999999999999999999996554 56777889999999999999999999999986 677777777
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 481 VFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 481 l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
.+..+...++ +++|...++++.+ +.| +..++..++.+|.+.|+.+.|+..|--+.+.+|...
T Consensus 563 ~~~il~~~~~-~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 563 RASILFSLGR-YVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHHhhcc-hHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 8888899999 9999999999998 667 678889999999999999999999999999999863
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.7e-14 Score=123.84 Aligned_cols=365 Identities=15% Similarity=0.079 Sum_probs=265.2
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh--h
Q 038622 120 GFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTI--T 197 (587)
Q Consensus 120 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~ 197 (587)
+...|...+...+..+.+.|....|+..|...... .|-.-.+|..+... ..+ +++...+.... +.+.. .
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~l---it~----~e~~~~l~~~l-~~~~h~M~ 229 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSEL---ITD----IEILSILVVGL-PSDMHWMK 229 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHh---hch----HHHHHHHHhcC-cccchHHH
Confidence 33556666677777888889999999999988764 12233333333332 222 23333333222 22211 2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHhHHHHHHH
Q 038622 198 YNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQP---DEFTYNMLIDS 274 (587)
Q Consensus 198 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~ 274 (587)
-..+..++....+.+++.+-.+.+...|++.+...-+....+.....|+++|+.+|+++.+.. |- |..+|..++-.
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD-PYRl~dmdlySN~LYv 308 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND-PYRLDDMDLYSNVLYV 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcchhHHHHhHHHHH
Confidence 223455666677888999888888888888777666777777888899999999999999873 22 34566655433
Q ss_pred HHccCChHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 038622 275 LCSRGMLEEALKLLKE-MESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVED 353 (587)
Q Consensus 275 ~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 353 (587)
+..+.. +.++-. ....+ +-.+.+...+++-|+-.++.++|...|++.++.+ |.....|..++.-|...++...
T Consensus 309 --~~~~sk--Ls~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~A 382 (559)
T KOG1155|consen 309 --KNDKSK--LSYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHA 382 (559)
T ss_pred --HhhhHH--HHHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHH
Confidence 222111 222222 22222 3455677788888999999999999999999987 6677889999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038622 354 AAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQM 433 (587)
Q Consensus 354 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 433 (587)
|++.|+++++-. +.|-..|..++++|.-.+.+.-|+-+|+++....+. |...|..|+.+|.+.++.++|++.|.++..
T Consensus 383 Ai~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 383 AIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred HHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 999999999863 347889999999999999999999999999986433 788999999999999999999999999998
Q ss_pred cCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 038622 434 KGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEK----ADPPD--ALTYKHVFRGLCNGGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 434 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 504 (587)
.+-. +...+..++..+.+.++.++|...|++.++. |...+ ......+..-+.+.++ +++|..+......
T Consensus 461 ~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~-~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 461 LGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKD-FDEASYYATLVLK 535 (559)
T ss_pred cccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHhc
Confidence 7533 5688999999999999999999999998873 22222 2223334555666777 8888888777765
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-15 Score=144.01 Aligned_cols=293 Identities=12% Similarity=0.035 Sum_probs=188.7
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 038622 241 CLTSNFDVAMELFQEMKTKGCQPD-EFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEA 319 (587)
Q Consensus 241 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 319 (587)
...|+++.|.+.+.+..+. .|+ ...+...+.+....|+++.|.+++.++.+....+........+..+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4567888888887776655 333 3344455667777788888888888776543111122333356777778888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHH-HHH---HHHhcCCHHHHHHHHHH
Q 038622 320 EEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNS-LLT---YYCRAGDIKRAADIVQN 395 (587)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~---~~~~~~~~~~A~~~~~~ 395 (587)
...++.+.+.. |.++.....+...+...|+++.|.+.+....+.+.. +...+.. -.. .....+..+.+...+..
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 88888887765 556677777788888888888888888888776543 2222211 111 11222233333344444
Q ss_pred HHHCCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHh-HHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 038622 396 MTSNGC---EPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQA-YNPVIQALFRRKRTTEAMRLFREMMEKAD 471 (587)
Q Consensus 396 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 471 (587)
+....+ +.+...+..++..+...|+.++|.+.+++..+..+...... ...........++.+.+.+.+++.++..
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~- 329 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV- 329 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-
Confidence 444322 12666777788888888888888888888887533321111 1112222234577788888888888763
Q ss_pred CCCH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 038622 472 PPDA--LTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMD 539 (587)
Q Consensus 472 ~~~~--~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 539 (587)
|.++ .....+++.+.+.|+ +++|.++|+++......|++..+..++.++.+.|+.++|.+++++.+.
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~-~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGE-FIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCChhHHHHHHHHHHHHHccc-HHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555 566678888888888 888888888433222568877777888888888888888888888654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.3e-15 Score=140.86 Aligned_cols=286 Identities=10% Similarity=0.069 Sum_probs=200.3
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHhHHHH-HHHHHccCChHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHccCCHHH
Q 038622 242 LTSNFDVAMELFQEMKTKGCQPDEFTYNML-IDSLCSRGMLEEALKLLKEMESSGCARNVVTY--NTLIDGFCKLKRIEE 318 (587)
Q Consensus 242 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~ 318 (587)
..|+++.|.+......+. .+++..+..+ +.+....|+++.|...+.++.+.. |+.... ...+..+...|+++.
T Consensus 96 ~eGd~~~A~k~l~~~~~~--~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADH--AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred hCCCHHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHH
Confidence 367888888777665543 2233333333 444477888888888888887653 333222 233667778888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh-------hHHHHHHHHHhcCCHHHHHH
Q 038622 319 AEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKF-------TYNSLLTYYCRAGDIKRAAD 391 (587)
Q Consensus 319 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~ 391 (587)
|...++.+.+.. |.++.....+...|.+.|++++|..++..+.+.+..++.. .+..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 888888887765 6667777788888888888888888888888764432221 22222333333445566666
Q ss_pred HHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 038622 392 IVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKAD 471 (587)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 471 (587)
+|+.+.+. .+.++.....++..+...|+.++|.+++++..+. .+++... +.......++.+++++.+++..+..
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~- 324 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH- 324 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-
Confidence 66665443 2336677888888889999999999999888874 3444332 2333345588899999999888863
Q ss_pred CCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcC
Q 038622 472 PPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKA 541 (587)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 541 (587)
|.|+.....++..+...++ +++|.+.|+++++ ..|+...+..++.++.+.|+.++|.+++++.+...
T Consensus 325 P~~~~l~l~lgrl~~~~~~-~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGE-WQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 6666677788888888888 9999999999988 56888888889999999999999999999887643
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-18 Score=156.86 Aligned_cols=261 Identities=14% Similarity=0.142 Sum_probs=78.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 038622 305 TLIDGFCKLKRIEEAEEIFDEMEIQG-ISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRA 383 (587)
Q Consensus 305 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 383 (587)
.++..+...|++++|++++....... .+.+...|..+.......++++.|...++++...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 34555566666666666664433322 2334444444555555566666666666666654221 33344444444 455
Q ss_pred CCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChHhHHHHHHHHHhcCCHHHHHHH
Q 038622 384 GDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKG-IVLTPQAYNPVIQALFRRKRTTEAMRL 462 (587)
Q Consensus 384 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 462 (587)
+++++|..+++...+.. +++..+..++..+...++++++..+++.+.... .+.+...|..++..+.+.|++++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666665544432 334445555555666666666666666655431 223445566666666666666666666
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCC
Q 038622 463 FREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAK 542 (587)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 542 (587)
++++++.. |.+......+++.+...|+ .+++.+.++...+.. +.++..+..++.+|...|++++|+.+++++.+..|
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~-~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGD-YDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCH-HHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCC-hHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 66666653 4445555566666666666 666666666655432 23555556666666666666666666666666666
Q ss_pred CCCc-hhhhhhhHHHHHHHHHHHHhcchhhh
Q 038622 543 FSDR-ETSMVRGFLKIRKFQDALATFGDILD 572 (587)
Q Consensus 543 ~~~~-~~~~~~~~~~~~~~~~A~~~~~~~~~ 572 (587)
.+.. ...++.++.+.|+.++|.....++..
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 5433 45666666666666666666655543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-18 Score=156.00 Aligned_cols=262 Identities=19% Similarity=0.207 Sum_probs=107.0
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 038622 270 MLIDSLCSRGMLEEALKLLKEMESSG-CARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKS 348 (587)
Q Consensus 270 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 348 (587)
.++..+...|++++|+++++...... .+.+...|..++......++++.|...++++...+ +.++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 55777888888888888886544332 24555666677777778888888888888887765 3355566666666 678
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCcchHHHHHHHHHhcCChHHHHHH
Q 038622 349 RRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNG-CEPDIVTYGTLIGGLCKAGRVEVASKL 427 (587)
Q Consensus 349 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 427 (587)
+++++|..++.+..+. .+++..+..++..+...++++++..+++.+.... ..++...|..++..+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888877664 3456667777888888899999999888877542 234666778888888899999999999
Q ss_pred HHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 038622 428 LRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGF 507 (587)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~ 507 (587)
++++++..+. +......++..+...|+.+++.++++...+.. +.++..+..++.++...|+ .++|..+++++.+.+
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~-~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGR-YEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT--HHHHHHHHHHHHHHS-
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccc-ccccccccccccccc-
Confidence 9999886443 56778888888888999998888888887763 5566677788888888898 999999999988743
Q ss_pred CCCHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 038622 508 LPEFSSFYMLAEGLVSLGKEETLVELIDMVMD 539 (587)
Q Consensus 508 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 539 (587)
+.|+.+...++.++...|+.++|.++.+++.+
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 33788888999999999999999998888765
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-15 Score=144.50 Aligned_cols=293 Identities=13% Similarity=0.021 Sum_probs=219.3
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 038622 274 SLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVED 353 (587)
Q Consensus 274 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 353 (587)
.....|+++.|.+.+.+..+.. +.+...+...+.+....|+++.|.+.+.++.+....+...........+...|+++.
T Consensus 93 la~~~g~~~~A~~~l~~~~~~~-~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 93 LKLAEGDYAKAEKLIAKNADHA-AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HHHhCCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHH
Confidence 3457899999999999987764 333444556678888999999999999998775422222334445788889999999
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHH----HHHHHHHhcCChHHHHHHHH
Q 038622 354 AAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYG----TLIGGLCKAGRVEVASKLLR 429 (587)
Q Consensus 354 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~ 429 (587)
|...++.+.+.. +-+...+..++..+...|+++.|.+.+..+.+.+.. +...+. .........+..+++.+.+.
T Consensus 172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999999999874 336678888999999999999999999999987654 332221 11122233334444445565
Q ss_pred HHHHcCCC---CChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 038622 430 SIQMKGIV---LTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALT--YKHVFRGLCNGGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 430 ~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~A~~~~~~~~~ 504 (587)
.+....+. .++..+..++..+...|++++|.+.+++.++.. |++... ...........++ .+.+.+.+++.++
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-pd~~~~~~~~l~~~~~l~~~~-~~~~~~~~e~~lk 327 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-GDDRAISLPLCLPIPRLKPED-NEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCcccchhHHHHHhhhcCCCC-hHHHHHHHHHHHH
Confidence 55554221 377888999999999999999999999999963 333321 1111112233455 8999999999998
Q ss_pred cCCCC-CH--HHHHHHHHHHHccCCHhHHHHHHH--HHHhcCCCCCchhhhhhhHHHHHHHHHHHHhcchhhhc
Q 038622 505 RGFLP-EF--SSFYMLAEGLVSLGKEETLVELID--MVMDKAKFSDRETSMVRGFLKIRKFQDALATFGDILDS 573 (587)
Q Consensus 505 ~~~~p-~~--~~~~~l~~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 573 (587)
. .| ++ .....+|+++.+.|++++|.+.++ .+.+..|+++...+++..+.+.|+.++|...|++.+..
T Consensus 328 ~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 328 N--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred h--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4 46 67 778899999999999999999999 57788888877889999999999999999999987543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.7e-14 Score=121.49 Aligned_cols=458 Identities=14% Similarity=0.085 Sum_probs=280.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCh
Q 038622 62 MQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHV 141 (587)
Q Consensus 62 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 141 (587)
+.-+....++..|+.+++-....+-.....+-.-++.++.+.|++++|+..+..+.... .++...+..++..+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 55666778899999988887765433222334446677888899999999888877654 66677777788777778888
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 038622 142 KQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVL 221 (587)
Q Consensus 142 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 221 (587)
.+|..+-.++.+ ++-....+.....+.++-++-...-+.+.. ..+--.+|+......-++++|+++|.++
T Consensus 108 ~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 888887666432 344445555666677776666555444432 2344456667766777888999999888
Q ss_pred HhCCCCCCHhhHHH-HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH
Q 038622 222 TSKGILPDVCTFNS-LIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNV 300 (587)
Q Consensus 222 ~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 300 (587)
+..+ |+-...+. +.-+|.+..-++.+.+++.-..+. ++.++.+.+..+....+.=+-..|..-.+.+.+.+ ....
T Consensus 178 L~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~-~~~~ 253 (557)
T KOG3785|consen 178 LQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNI-DQEY 253 (557)
T ss_pred HhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcc-cccc
Confidence 7652 33333333 344667777788888888877765 23334444444444444433344444455555433 1111
Q ss_pred HHHHHHHH-HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 038622 301 VTYNTLID-GFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTY 379 (587)
Q Consensus 301 ~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (587)
.....+.+ -+.--.+-+.|++++-.+... -| ..-..++-.|.+.++..+|..+.++... ..| .-|..-+-.
T Consensus 254 ~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP--~EyilKgvv 325 (557)
T KOG3785|consen 254 PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDP--TTP--YEYILKGVV 325 (557)
T ss_pred hhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCC--CCh--HHHHHHHHH
Confidence 11111111 111223456788877766543 12 2333455567788888888887766431 122 222222222
Q ss_pred HHhcC-------CHHHHHHHHHHHHHCCCCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 038622 380 YCRAG-------DIKRAADIVQNMTSNGCEPD-IVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALF 451 (587)
Q Consensus 380 ~~~~~-------~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 451 (587)
+...| ...-|.+.|+..-+.+..-| ..--..++..+.-..++++.+.++..+..- +..+......++.+++
T Consensus 326 ~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~ 404 (557)
T KOG3785|consen 326 FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKL 404 (557)
T ss_pred HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHH
Confidence 33333 23445566655544433322 333455666677777888888888887765 3334444457888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHhH
Q 038622 452 RRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP--EFSSFYMLAEGLVSLGKEET 529 (587)
Q Consensus 452 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~ 529 (587)
..|++.+|.++|-++..-.+..+......++.++.+.++ .+-|...+-++ + .| ....+..+++.|++.+.+=-
T Consensus 405 atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkk-P~lAW~~~lk~---~-t~~e~fsLLqlIAn~CYk~~eFyy 479 (557)
T KOG3785|consen 405 ATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKK-PQLAWDMMLKT---N-TPSERFSLLQLIANDCYKANEFYY 479 (557)
T ss_pred HhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCC-chHHHHHHHhc---C-CchhHHHHHHHHHHHHHHHHHHHH
Confidence 888999888888877654333333333445555666666 77776655443 2 23 34555667788888888888
Q ss_pred HHHHHHHHHhcCCCCCchh
Q 038622 530 LVELIDMVMDKAKFSDRET 548 (587)
Q Consensus 530 A~~~~~~~~~~~~~~~~~~ 548 (587)
|.+.|+.+-..+|.++.|.
T Consensus 480 aaKAFd~lE~lDP~pEnWe 498 (557)
T KOG3785|consen 480 AAKAFDELEILDPTPENWE 498 (557)
T ss_pred HHHhhhHHHccCCCccccC
Confidence 8888888888888887765
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.2e-14 Score=120.30 Aligned_cols=453 Identities=14% Similarity=0.088 Sum_probs=293.1
Q ss_pred HHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 038622 27 IKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRI 106 (587)
Q Consensus 27 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 106 (587)
+.-++...++..|+.+++.....+-.....+-..++.++.+.|++++|+..|+.+.+.+ .++...+..|+-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 56677789999999999887755433333455557788899999999999999998865 66777888899999999999
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 038622 107 EDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQM 186 (587)
Q Consensus 107 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 186 (587)
.+|..+..+.. .++..-..+.....+.++-++....-+.+... ...-..++......-.+++|+++|..+
T Consensus 108 ~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99998876543 34555566777777888877777766665432 233344555555566799999999999
Q ss_pred HhCCCCCChhh-HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 038622 187 ILRDCSPNTIT-YNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDE 265 (587)
Q Consensus 187 ~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 265 (587)
+..+ |+-.+ -..++-+|.+..-++-+.+++...+.. ++.++.+.+..+....+.-+-..|..-.+.+...+.. .
T Consensus 178 L~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~-~- 252 (557)
T KOG3785|consen 178 LQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ-E- 252 (557)
T ss_pred HhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc-c-
Confidence 8763 23333 334667888888888888888887775 3334444444444444443333344444444433211 1
Q ss_pred HhHHHHHHHHHcc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038622 266 FTYNMLIDSLCSR-----GMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNT 340 (587)
Q Consensus 266 ~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 340 (587)
...+.-.++. .+-+.|++++-.+.+. -+.+...++--|.+.++.++|..+...+. |.++.-|..
T Consensus 253 ---~~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~Eyil 321 (557)
T KOG3785|consen 253 ---YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYIL 321 (557)
T ss_pred ---chhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcC----CCChHHHHH
Confidence 1122222222 3456788877776653 22344556667889999999998877653 444544444
Q ss_pred HHHHHHhcCC-------HHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHH
Q 038622 341 LIDGLCKSRR-------VEDAAQLMDQMIMEGLKPDK-FTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLI 412 (587)
Q Consensus 341 l~~~~~~~~~-------~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 412 (587)
-+..+...|+ ..-|.+.|+-.-..+..-|. .--..+..++.-..++++.+.++..+...- ..|......++
T Consensus 322 Kgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~N~A 400 (557)
T KOG3785|consen 322 KGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF-TNDDDFNLNLA 400 (557)
T ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhHHH
Confidence 4444444443 33444444433333222221 123344555555667899998888887753 33444556789
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChHhH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHHHhCCC
Q 038622 413 GGLCKAGRVEVASKLLRSIQMKGIVLTPQAY-NPVIQALFRRKRTTEAMRLFREMMEKADPPDALTY-KHVFRGLCNGGG 490 (587)
Q Consensus 413 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~ 490 (587)
++++..|++.+|.++|-++....++ +..+| ..++++|.+.++++.|+.++-++-. +.+...+ ..++..|...+.
T Consensus 401 QAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~e 476 (557)
T KOG3785|consen 401 QAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANE 476 (557)
T ss_pred HHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888765455 34444 5678899999999999887765532 3344433 344556778887
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHH
Q 038622 491 PIGEAVDFVIEMLERGFLPEFSSF 514 (587)
Q Consensus 491 ~~~~A~~~~~~~~~~~~~p~~~~~ 514 (587)
+--|-+.|..+-. .+|+++.|
T Consensus 477 -FyyaaKAFd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 477 -FYYAAKAFDELEI--LDPTPENW 497 (557)
T ss_pred -HHHHHHhhhHHHc--cCCCcccc
Confidence 6666667766554 56777666
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-12 Score=119.16 Aligned_cols=522 Identities=10% Similarity=0.066 Sum_probs=314.0
Q ss_pred hhHHHHHHHHHHcCChhhHHHHHHhhccC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038622 21 STFNILIKALCKAHQIRPAILMMEEMPGY-GLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHG 99 (587)
Q Consensus 21 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 99 (587)
.+|...+..+.++|+...-...|..++.. .+.....+|-..+.-..+.|-++-++.+|++.++.. +......+..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHH
Confidence 56777777777777777777777776643 223345567777777777777777777777777653 2334556666
Q ss_pred HHhcCCHHHHHHHHHHHHHCC------CCCChhhHHHHHHHHHhcCChH---HHHHHHHHHHhCCCCCC--cccHHHHHH
Q 038622 100 FCKEGRIEDALSFIQEMVSEG------FNPDQFTYNTLVNGLCKVGHVK---QALEVMDMMLQEGFDPD--VFTYNSLIS 168 (587)
Q Consensus 100 ~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~--~~~~~~l~~ 168 (587)
++..+++++|.+.+...+... .+.+-..|..+.....+.-+.- ...++++.+... -+| ...|..|+.
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHH
Confidence 777777777777777665431 1333445555555555443322 233344444432 223 345677778
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcc----------------C------CHHHHHHHHHHHHhCC-
Q 038622 169 GLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKE----------------N------QVEEATELARVLTSKG- 225 (587)
Q Consensus 169 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~------~~~~a~~~~~~~~~~~- 225 (587)
-|.+.|.++.|..+|++.+..- ....-+..+...|..- + +++-....++.+....
T Consensus 257 YYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~ 334 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP 334 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc
Confidence 8888888888888888776541 1222233333322211 1 1112222333333221
Q ss_pred ----------CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC------HHhHHHHHHHHHccCChHHHHHHHH
Q 038622 226 ----------ILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPD------EFTYNMLIDSLCSRGMLEEALKLLK 289 (587)
Q Consensus 226 ----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~ 289 (587)
.+.++..|..-.. ...|+..+-...|.++++. +.|. ...|..++..|-..|+.+.|..+|+
T Consensus 335 ~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvife 411 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFE 411 (835)
T ss_pred hHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHH
Confidence 1112333333222 2345666777777777653 1222 3567788888888888888888888
Q ss_pred HHHHCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-----------------CCHHHHHHHHHHHHhcC
Q 038622 290 EMESSGCARN---VVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGIS-----------------RNSVTYNTLIDGLCKSR 349 (587)
Q Consensus 290 ~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~~ 349 (587)
+..+...+.- ..+|...+..-.+..+++.|+++.+.+.....+ .+..+|...+......|
T Consensus 412 ka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~g 491 (835)
T KOG2047|consen 412 KATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLG 491 (835)
T ss_pred HhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhc
Confidence 8876543222 345555566666777888888888776432111 01234555555556677
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc-chHHHHHHHHH---hcCChHHHH
Q 038622 350 RVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDI-VTYGTLIGGLC---KAGRVEVAS 425 (587)
Q Consensus 350 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~---~~~~~~~a~ 425 (587)
-++....+|+++++..+. ++......+..+-...-++++.++|++-+..-..|+. .+|+..+.-+. ....++.|.
T Consensus 492 tfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraR 570 (835)
T KOG2047|consen 492 TFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERAR 570 (835)
T ss_pred cHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 888888888888876443 4444444444455666778888888877765444443 34444333332 233788889
Q ss_pred HHHHHHHHcCCCCCh--HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 038622 426 KLLRSIQMKGIVLTP--QAYNPVIQALFRRKRTTEAMRLFREMMEKADPPD--ALTYKHVFRGLCNGGGPIGEAVDFVIE 501 (587)
Q Consensus 426 ~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~A~~~~~~ 501 (587)
.+|+++++. .+|.. ..|...+..-...|-...|+.+|+++... +++. ...|+.++.-....-+ ...-..+|++
T Consensus 571 dLFEqaL~~-Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yG-v~~TR~iYek 647 (835)
T KOG2047|consen 571 DLFEQALDG-CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYG-VPRTREIYEK 647 (835)
T ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhC-CcccHHHHHH
Confidence 999888883 33333 23333344444568888888888887764 2332 2345555555444444 6777889999
Q ss_pred HHHcCCCCCH---HHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC---CchhhhhhhHHHHHH
Q 038622 502 MLERGFLPEF---SSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS---DRETSMVRGFLKIRK 559 (587)
Q Consensus 502 ~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 559 (587)
+++. -|+. ......++.-.+.|..+.|+.+|.-..+..+.. +.|..|-..-+++|+
T Consensus 648 aIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 648 AIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 9983 4543 345667778889999999999998877765433 348888888888887
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.1e-13 Score=115.22 Aligned_cols=322 Identities=18% Similarity=0.241 Sum_probs=147.0
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHH--HHhcCChhHH-HHHHHHHHHcCCCCChhhHHHHHH
Q 038622 22 TFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQG--LIEEGNLDGA-LRIREQMVEHGCLVTNVTVNVLVH 98 (587)
Q Consensus 22 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A-~~~~~~~~~~~~~~~~~~~~~l~~ 98 (587)
+=+.|+. ....|....+.-+|+.|...|++.++.....+++. |..+.+..-| .+.|-.+...+ ..+..+|
T Consensus 118 ~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW----- 190 (625)
T KOG4422|consen 118 TENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW----- 190 (625)
T ss_pred chhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc-----
Confidence 3344444 35577788888888888887777777766655543 3333332211 11222222222 1111112
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHH
Q 038622 99 GFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEE 178 (587)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 178 (587)
+.|+..+ ++-+. .|.+..++..++.++++.-..+.|.+++++......+.+..+++.++.+-.-. .
T Consensus 191 ---K~G~vAd---L~~E~----~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~ 256 (625)
T KOG4422|consen 191 ---KSGAVAD---LLFET----LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----V 256 (625)
T ss_pred ---ccccHHH---HHHhh----cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----c
Confidence 1222111 11111 13344455555555555555555555555554444444445555544432221 1
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHH----HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHH-HHHHH
Q 038622 179 AVEILNQMILRDCSPNTITYNTLISTLCKENQVEEA----TELARVLTSKGILPDVCTFNSLIQGLCLTSNFDV-AMELF 253 (587)
Q Consensus 179 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~ 253 (587)
..+++.+|......||..+++.++.+..+.|+++.| .+++.+|.+.|+.|...+|..++..+.+.++..+ +..+.
T Consensus 257 ~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i 336 (625)
T KOG4422|consen 257 GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWI 336 (625)
T ss_pred cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHH
Confidence 144455555555555555555555555555544432 3444555555555555555555555554444322 33333
Q ss_pred HHHHHc----CC----CCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHccCCHHH
Q 038622 254 QEMKTK----GC----QPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSG----CARN---VVTYNTLIDGFCKLKRIEE 318 (587)
Q Consensus 254 ~~~~~~----~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~ 318 (587)
.++... .+ +.+...+...+..|....+.+-|.++..-+.... ++++ ...|..+..+.++....+.
T Consensus 337 ~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~ 416 (625)
T KOG4422|consen 337 NDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDV 416 (625)
T ss_pred HHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333221 11 1122333334444444444444444433322110 1111 1123344444455555555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038622 319 AEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIME 364 (587)
Q Consensus 319 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 364 (587)
-...|+.+.-.-+-|++.+...++++..-.+.++-.-++|..++..
T Consensus 417 ~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ 462 (625)
T KOG4422|consen 417 TLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEY 462 (625)
T ss_pred HHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHh
Confidence 5555555554444455555555555555555555555555555443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.4e-12 Score=115.68 Aligned_cols=166 Identities=12% Similarity=0.037 Sum_probs=92.9
Q ss_pred CCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCC---CCC
Q 038622 17 KPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIE----EGNLDGALRIREQMVEHGC---LVT 89 (587)
Q Consensus 17 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~---~~~ 89 (587)
|.+.-+|--.|..-.. .-..+-..+|+++.+. ++.+..+|...+..-.. ..-.+.+...++...++.+ ..-
T Consensus 24 p~svk~W~RYIe~k~~-sp~k~~~~lYERal~~-lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkm 101 (835)
T KOG2047|consen 24 PFSVKCWLRYIEHKAG-SPDKQRNLLYERALKE-LPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKM 101 (835)
T ss_pred chhHHHHHHHHHHHcc-CChHHHHHHHHHHHHH-CCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcC
Confidence 4555666655554332 2233444566666654 25566666666633221 1122333333333322221 234
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 038622 90 NVTVNVLVHGFCKEGRIEDALSFIQEMVSE-GFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLIS 168 (587)
Q Consensus 90 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 168 (587)
+.+|...+..+..+|+....+..|++++.. .+.....+|...+......+-++.+..+|++.++. ++......+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 566666777777777777777777776653 12223446777777767777777777777777663 2233555666
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 038622 169 GLCKLGEVEEAVEILNQMIL 188 (587)
Q Consensus 169 ~~~~~g~~~~a~~~~~~~~~ 188 (587)
.++..+++++|-+.+..++.
T Consensus 178 ~L~~~d~~~eaa~~la~vln 197 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLN 197 (835)
T ss_pred HHHhccchHHHHHHHHHhcC
Confidence 66777777777777666653
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.5e-13 Score=116.13 Aligned_cols=425 Identities=16% Similarity=0.207 Sum_probs=281.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC--CHHHH-HHHHHHHHHCCCCCChhhHHHHHHH
Q 038622 58 FTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEG--RIEDA-LSFIQEMVSEGFNPDQFTYNTLVNG 134 (587)
Q Consensus 58 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~ 134 (587)
-+.++. ...+|...++--+|+.|.+.|.+.++.+-..|...-+-.+ ++--| .+.|-.|.+.| ..+..+|.
T Consensus 119 E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sWK----- 191 (625)
T KOG4422|consen 119 ENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSWK----- 191 (625)
T ss_pred hhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-cccccccc-----
Confidence 344444 4467889999999999999998888888777766444333 22211 22333333333 22333442
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHH
Q 038622 135 LCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEA 214 (587)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 214 (587)
.|...+ -+++. .+.+..++..++.+.++.-..+.|.++|++......+.+..+++.++.+-.-. ..
T Consensus 192 ---~G~vAd--L~~E~-----~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~ 257 (625)
T KOG4422|consen 192 ---SGAVAD--LLFET-----LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VG 257 (625)
T ss_pred ---cccHHH--HHHhh-----cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----cc
Confidence 344333 23332 24467899999999999999999999999998876678888999888765433 33
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHH----HHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChH-HHHHHHH
Q 038622 215 TELARVLTSKGILPDVCTFNSLIQGLCLTSNFDV----AMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLE-EALKLLK 289 (587)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~ 289 (587)
.+++.+|....+.||..|++.++.+..+.|+++. |.+++.+|.+.|+.|...+|..++..+.+.++.. .+..++.
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~ 337 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIN 337 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHH
Confidence 7788889888899999999999999999998765 4577788899999999999999999888877764 4666666
Q ss_pred HHHHC--C------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHHhcCCHHHH
Q 038622 290 EMESS--G------CARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQG----ISRN---SVTYNTLIDGLCKSRRVEDA 354 (587)
Q Consensus 290 ~~~~~--~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~A 354 (587)
++... | .+.+...+...+..|....+.+-|.++..-+.... ++++ ..-|..+..+.++....+.-
T Consensus 338 dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~ 417 (625)
T KOG4422|consen 338 DIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVT 417 (625)
T ss_pred HHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66442 1 13344556677777888888888887776554321 2222 22345566677788888999
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcC-Ch--------H---
Q 038622 355 AQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAG-RV--------E--- 422 (587)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~--------~--- 422 (587)
...|+.++-.-.-|+..+...++++..-.+.++-..++|..++..|..-+......+...+++.. .+ .
T Consensus 418 ~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ 497 (625)
T KOG4422|consen 418 LKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAF 497 (625)
T ss_pred HHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Confidence 99999998876778888888899988888999999999988887764433333334444443322 11 0
Q ss_pred --HHHHHH-------HHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-C---CCHHHHHHHHHHHHhCC
Q 038622 423 --VASKLL-------RSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKAD-P---PDALTYKHVFRGLCNGG 489 (587)
Q Consensus 423 --~a~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~---~~~~~~~~l~~~~~~~~ 489 (587)
-|..++ .++.+ ...+....+.++-.+.+.|.+++|.+++..+.+.+- - |....+..+.....+..
T Consensus 498 ak~aad~~e~~e~~~~R~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~ 575 (625)
T KOG4422|consen 498 AKCAADIKEAYESQPIRQRA--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSN 575 (625)
T ss_pred HHHHHHHHHHHHhhHHHHHh--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcC
Confidence 011111 11121 223445566677777777777777777777755421 1 22222223344434444
Q ss_pred CCHHHHHHHHHHHHHcC
Q 038622 490 GPIGEAVDFVIEMLERG 506 (587)
Q Consensus 490 ~~~~~A~~~~~~~~~~~ 506 (587)
. ...|+..++-|...+
T Consensus 576 s-psqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 576 S-PSQAIEVLQLASAFN 591 (625)
T ss_pred C-HHHHHHHHHHHHHcC
Confidence 4 666777776666543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-14 Score=134.89 Aligned_cols=284 Identities=9% Similarity=0.037 Sum_probs=168.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHH--HHHHHHHhcCCHHH
Q 038622 102 KEGRIEDALSFIQEMVSEGFNPDQFTYN-TLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYN--SLISGLCKLGEVEE 178 (587)
Q Consensus 102 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~ 178 (587)
..|+++.|.+.+....+.. +++..+. ....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 3577777777766655431 2222222 2344446777777777777777664 34433222 33566777777777
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHh-------hHHHHHHHHHhcCChHHHHH
Q 038622 179 AVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVC-------TFNSLIQGLCLTSNFDVAME 251 (587)
Q Consensus 179 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~ 251 (587)
|...++++.+.+ |.++.....+...|.+.|++++|.+++..+.+.+..++.. ++..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 777777777665 4466677777777777777777777777777664332111 12222222223334444445
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 038622 252 LFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGI 331 (587)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 331 (587)
+++.+.+. .+.++.....++..+...|+.++|...+++..+. +++..... +.+....++.+++++..+...+..
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~~--l~~~l~~~~~~~al~~~e~~lk~~- 324 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLVL--LIPRLKTNNPEQLEKVLRQQIKQH- 324 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHH--HHhhccCCChHHHHHHHHHHHhhC-
Confidence 55544332 1445666666667777777777777777666653 34442222 222234466666776666666554
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038622 332 SRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTS 398 (587)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 398 (587)
|.++.....++..+...+++++|.+.|+++... .|+...+..+..++.+.|+.++|..++++...
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455556666666677777777777777776663 56666666666667777777777766666543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.2e-14 Score=120.56 Aligned_cols=297 Identities=16% Similarity=0.186 Sum_probs=232.8
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCCH
Q 038622 240 LCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCAR---NVVTYNTLIDGFCKLKRI 316 (587)
Q Consensus 240 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~ 316 (587)
+.-..+.++|.++|-+|.+.+ +....+...++..+.+.|..+.|+++.+.+.+....+ ...+...++.-|...|-+
T Consensus 45 fLLs~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 45 FLLSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred HHhhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 344678899999999999864 4456777889999999999999999999988752111 123566788889999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----hhHHHHHHHHHhcCCHHHHHHH
Q 038622 317 EEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDK----FTYNSLLTYYCRAGDIKRAADI 392 (587)
Q Consensus 317 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~ 392 (587)
+.|..+|..+.+.+ ..-......++..|....+|++|++.-++..+.+..+.. ..|..+...+....+.+.|...
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999999988754 345567788999999999999999999999886544432 2456677777788899999999
Q ss_pred HHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038622 393 VQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADP 472 (587)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 472 (587)
+.++.+.+.+ ++..-..+++.....|+++.|.+.++.+.+.++..-+.+...+..+|...|+.++...++.++.+..
T Consensus 203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~-- 279 (389)
T COG2956 203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN-- 279 (389)
T ss_pred HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--
Confidence 9999987654 6777888999999999999999999999998766667888899999999999999999999999863
Q ss_pred CCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---ccCCHhHHHHHHHHHHhcCCCC
Q 038622 473 PDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLV---SLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 473 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
+.......+......... .+.|..++.+-+.. .|+...++.+..... ..|...+-...++.++......
T Consensus 280 ~g~~~~l~l~~lie~~~G-~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~ 351 (389)
T COG2956 280 TGADAELMLADLIELQEG-IDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRR 351 (389)
T ss_pred CCccHHHHHHHHHHHhhC-hHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhh
Confidence 333333344444444455 68898888888874 699888888888765 3455677777777777655443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-12 Score=120.18 Aligned_cols=154 Identities=10% Similarity=0.070 Sum_probs=88.4
Q ss_pred hcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHH
Q 038622 67 EEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALE 146 (587)
Q Consensus 67 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 146 (587)
..+++...++..+.+++. .+....+....+-.+...|+-++|....+..++.+ ..+..+|..++-.+....++++|++
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHH
Confidence 556666666666666663 34455555555555666666666666666655543 3345566666666666666666666
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 038622 147 VMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSK 224 (587)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 224 (587)
.|..+...+ +.|...+..+...-...|+++.....-....... +.....|..++.++.-.|++..|..+++...+.
T Consensus 97 cy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 97 CYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKT 172 (700)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666543 2245555555555555666666555555555442 223445555566666666666666666555544
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-13 Score=119.48 Aligned_cols=274 Identities=11% Similarity=0.031 Sum_probs=166.6
Q ss_pred CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038622 261 CQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNT 340 (587)
Q Consensus 261 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 340 (587)
++.|......++.++...|+.++|+..|++....+ +.+.......+-.+.+.|++++...+...+.... ......|.-
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 35556667777777777777777777777766554 3444444555555566677776666666554432 123333444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC
Q 038622 341 LIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGR 420 (587)
Q Consensus 341 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 420 (587)
-+......++++.|+.+-++.++... .+...+..-+..+...+++++|.-.|+.++...+. +..+|..|+.+|...|+
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~-rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLAPY-RLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcchh-hHHHHHHHHHHHHhhch
Confidence 44445556677777777777766421 13334444456666777777777777776664222 56677777777777777
Q ss_pred hHHHHHHHHHHHHcCCCCChHhHHHHH-HHHH-hcCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhCCCCHHHHHH
Q 038622 421 VEVASKLLRSIQMKGIVLTPQAYNPVI-QALF-RRKRTTEAMRLFREMMEKADPPDA-LTYKHVFRGLCNGGGPIGEAVD 497 (587)
Q Consensus 421 ~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~A~~ 497 (587)
+.+|...-+...+. ++.+..+...++ ..+. ...--++|.+++++.+.. .|+. ...+.+...+...|. ++.++.
T Consensus 384 ~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~-~~D~i~ 459 (564)
T KOG1174|consen 384 FKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGP-TKDIIK 459 (564)
T ss_pred HHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCc-cchHHH
Confidence 77777666665554 222444444443 2222 223346677777777764 3443 334455555666666 777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 498 FVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 498 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
++++.+. .-||......|++++...+.+.+|...|..++..+|.+
T Consensus 460 LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 460 LLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 7777775 35677777777777777777777777777777777765
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.7e-13 Score=126.45 Aligned_cols=205 Identities=16% Similarity=0.140 Sum_probs=110.0
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh-hHHH
Q 038622 122 NPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTI-TYNT 200 (587)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~ 200 (587)
..|...|..+.-++...|+++.+.+.|++....- ......|+.+...+...|.-..|+.+++........|+.. .+..
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 3455666666666666777777777776665432 2234556666666666666666666666655443222222 2222
Q ss_pred HHHH-HhccCCHHHHHHHHHHHHhC--CC--CCCHhhHHHHHHHHHhc-----------CChHHHHHHHHHHHHcCCCCC
Q 038622 201 LIST-LCKENQVEEATELARVLTSK--GI--LPDVCTFNSLIQGLCLT-----------SNFDVAMELFQEMKTKGCQPD 264 (587)
Q Consensus 201 l~~~-~~~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~ 264 (587)
.... ..+.+..++++++-.++.+. +. ...+..+..++-+|... ....++.+.+++..+.+ +.|
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~d 477 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTD 477 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCC
Confidence 2222 22345566666555555441 10 11223333333333211 11234555566665554 344
Q ss_pred HHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 038622 265 EFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEI 328 (587)
Q Consensus 265 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 328 (587)
+.+...+..-|...++.+.|.+..++..+.+...+...|..++.++...+++.+|+.+.+....
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE 541 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 4555555555666666666666666666664455666666666666666666666666665544
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.5e-14 Score=118.69 Aligned_cols=233 Identities=15% Similarity=0.137 Sum_probs=111.6
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----hhhHHHHH
Q 038622 22 TFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVT----NVTVNVLV 97 (587)
Q Consensus 22 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~ 97 (587)
.|..=++.++ .++.++|+..|-+|.+.+ +...++...+++.|-+.|..|.|+++.+.+.++. ..+ ..+...|+
T Consensus 38 ~Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp-dlT~~qr~lAl~qL~ 114 (389)
T COG2956 38 DYVKGLNFLL-SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP-DLTFEQRLLALQQLG 114 (389)
T ss_pred HHHhHHHHHh-hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Confidence 3333334333 445555666665555543 3344444555555555566666666555555431 111 12233445
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----cccHHHHHHHHHhc
Q 038622 98 HGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPD----VFTYNSLISGLCKL 173 (587)
Q Consensus 98 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~ 173 (587)
.-|...|-++.|..+|..+...+ .--......++..|-...++++|+++-+++...+..+. ...|..+...+...
T Consensus 115 ~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~ 193 (389)
T COG2956 115 RDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALAS 193 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhh
Confidence 55555555555555555555432 22233445555555555555555555555554432221 11223333334444
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHH
Q 038622 174 GEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELF 253 (587)
Q Consensus 174 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 253 (587)
.+.+.|..++.+....+ +.++.+-..+++.....|+++.|++.++.+.+.+..--+.+...+..+|...|+.++....+
T Consensus 194 ~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 194 SDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFL 272 (389)
T ss_pred hhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 45555555555555444 33444444455555555555555555555554432222334444445555555555555555
Q ss_pred HHHHHc
Q 038622 254 QEMKTK 259 (587)
Q Consensus 254 ~~~~~~ 259 (587)
..+.+.
T Consensus 273 ~~~~~~ 278 (389)
T COG2956 273 RRAMET 278 (389)
T ss_pred HHHHHc
Confidence 544443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.3e-12 Score=119.52 Aligned_cols=462 Identities=14% Similarity=0.078 Sum_probs=300.8
Q ss_pred HHhcCChhHHHHHH----HHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 038622 65 LIEEGNLDGALRIR----EQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGH 140 (587)
Q Consensus 65 ~~~~g~~~~A~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 140 (587)
++-..+.+++.-.. .++....+..+..+|..+.-++.+.|+++.+.+.|++....- -.....|..+...+...|.
T Consensus 294 ~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~ 372 (799)
T KOG4162|consen 294 LIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGS 372 (799)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhcc
Confidence 33444455554332 223333355678889999999999999999999999987642 3356678999999999999
Q ss_pred hHHHHHHHHHHHhCCCCCC-cccHHHHHHHHH-hcCCHHHHHHHHHHHHhC--C--CCCChhhHHHHHHHHhcc------
Q 038622 141 VKQALEVMDMMLQEGFDPD-VFTYNSLISGLC-KLGEVEEAVEILNQMILR--D--CSPNTITYNTLISTLCKE------ 208 (587)
Q Consensus 141 ~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~--~--~~~~~~~~~~l~~~~~~~------ 208 (587)
-..|..+++........|+ ...+......|. +.+.+++++.+-.+++.. + -...+..+..++-+|...
T Consensus 373 ~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~ 452 (799)
T KOG4162|consen 373 DSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANL 452 (799)
T ss_pred chHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCC
Confidence 9999999988876533343 333333333333 567888888887777662 1 112344455555555422
Q ss_pred -----CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHH
Q 038622 209 -----NQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEE 283 (587)
Q Consensus 209 -----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 283 (587)
....++++.+++..+.+.. |+.....+.--|...++.+.|.+...+..+.+-..+...|..++.++...+++.+
T Consensus 453 ~seR~~~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~ 531 (799)
T KOG4162|consen 453 KSERDALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKE 531 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHH
Confidence 1245677888888776533 5555555666688899999999999999998657789999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038622 284 ALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIM 363 (587)
Q Consensus 284 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 363 (587)
|+.+.+.....- +.+......-+..-...++.++++.....+... |... ......++-....+....+.-
T Consensus 532 Al~vvd~al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--------we~~-~~~q~~~~~g~~~~lk~~l~l 601 (799)
T KOG4162|consen 532 ALDVVDAALEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLAL--------WEAE-YGVQQTLDEGKLLRLKAGLHL 601 (799)
T ss_pred HHHHHHHHHHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH--------HHhh-hhHhhhhhhhhhhhhhccccc
Confidence 999999887652 233333333344444578888888877766542 1100 001111111112222221111
Q ss_pred c--CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--C------cchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038622 364 E--GLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEP--D------IVTYGTLIGGLCKAGRVEVASKLLRSIQM 433 (587)
Q Consensus 364 ~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 433 (587)
. .......++..+.......+ ..+..-.. +.+.-..| + ...|...+..+...+..++|...+.++..
T Consensus 602 a~~q~~~a~s~sr~ls~l~a~~~--~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~ 678 (799)
T KOG4162|consen 602 ALSQPTDAISTSRYLSSLVASQL--KSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK 678 (799)
T ss_pred CcccccccchhhHHHHHHHHhhh--hhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Confidence 0 01111222222222111111 10000000 11111112 2 22455566777888999999988888887
Q ss_pred cCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHcCCCC-C
Q 038622 434 KGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVD--FVIEMLERGFLP-E 510 (587)
Q Consensus 434 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~--~~~~~~~~~~~p-~ 510 (587)
.. ......|+..+..+...|++++|.+.|..++..+ |.+......++..+.+.|+ ..-|.. ++..+++ ++| +
T Consensus 679 ~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~-~~la~~~~~L~dalr--~dp~n 753 (799)
T KOG4162|consen 679 ID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGS-PRLAEKRSLLSDALR--LDPLN 753 (799)
T ss_pred cc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCC-cchHHHHHHHHHHHh--hCCCC
Confidence 53 2356778888888999999999999999999875 6667778888888888887 666666 9999998 457 8
Q ss_pred HHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc
Q 038622 511 FSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 511 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
+++|+.+|.++.+.|+.++|...|..+.+..+..+.
T Consensus 754 ~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 754 HEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 999999999999999999999999999988876654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.6e-12 Score=109.83 Aligned_cols=293 Identities=14% Similarity=0.026 Sum_probs=180.7
Q ss_pred ccCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038622 277 SRGMLEEALKLLKEMES-SGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAA 355 (587)
Q Consensus 277 ~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 355 (587)
..++...+...+-.+.. ...+.+......++.++...|+..+|+..|++....+ |-+..........+...|+++...
T Consensus 208 ~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 208 FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHH
Confidence 33444444444333322 2245566667777777777777777777777766543 223333333444455667777776
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038622 356 QLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKG 435 (587)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 435 (587)
.+...+.... +-....|..-+......+++..|..+-++.++.+.. +...+..-+.++...|++++|.-.|+.+...
T Consensus 287 ~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L- 363 (564)
T KOG1174|consen 287 ALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQML- 363 (564)
T ss_pred HHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhc-
Confidence 6666665431 122333333344445566777777777777765433 4556666667777777777777777777663
Q ss_pred CCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH-HHHHhCCCCHHHHHHHHHHHHHcCCCCC-HH
Q 038622 436 IVL-TPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVF-RGLCNGGGPIGEAVDFVIEMLERGFLPE-FS 512 (587)
Q Consensus 436 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~ 512 (587)
.| +...|..++.+|...|++.+|.-.-....+. ++.+..++..++ ..+...-.--++|.+++++.++ +.|+ ..
T Consensus 364 -ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~ 439 (564)
T KOG1174|consen 364 -APYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTP 439 (564)
T ss_pred -chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHH
Confidence 32 3467777777777777777777766666654 345555554443 2232222225777777777776 4563 55
Q ss_pred HHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCchhhhhhhHHHHHHHHHHHHhcchhhhccCch
Q 038622 513 SFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDRETSMVRGFLKIRKFQDALATFGDILDSRMPR 577 (587)
Q Consensus 513 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 577 (587)
+...++..+...|++++++.++++.+...++......++.++...+.+.+|...|..++..+|+.
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 66667777777777777777777777777766667777777777777777777777777766554
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.3e-13 Score=116.54 Aligned_cols=284 Identities=14% Similarity=0.134 Sum_probs=132.6
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 038622 244 SNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIF 323 (587)
Q Consensus 244 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 323 (587)
|+|..|+++..+..+.+ +.....|..-+++--..|+.+.+-.++.++.+....++..............|+++.|..-+
T Consensus 98 G~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 44455544444433332 11122233333344444555555555554444321233333444444444445555555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh-------hHHHHHHHHHhcCCHHHHHHHHHHH
Q 038622 324 DEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKF-------TYNSLLTYYCRAGDIKRAADIVQNM 396 (587)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~~ 396 (587)
.++...+ |.++........+|.+.|++.....++.++.+.+.-.+.. ++..+++-....+..+.-...|+..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 5444443 3344444444455555555555555555555444332222 2333333333333333333344433
Q ss_pred HHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH
Q 038622 397 TSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDAL 476 (587)
Q Consensus 397 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 476 (587)
... ...++.....++.-+.++|+.++|.++.++..+.+..|+ ....-....-+++..=++..++..+.. +.++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CCChh
Confidence 322 222344445555555556666666666655555543332 111112334455555555555555542 33444
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 038622 477 TYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVM 538 (587)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 538 (587)
.+..++..|.+.+. |.+|..+++.+++ ..|+...+..++.++.+.|+..+|.+..++++
T Consensus 330 L~~tLG~L~~k~~~-w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 330 LLSTLGRLALKNKL-WGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHhhH-HHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 55555555555555 6666666665555 34555666666666666666666666665554
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.6e-11 Score=113.36 Aligned_cols=478 Identities=14% Similarity=0.129 Sum_probs=252.8
Q ss_pred hhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038622 21 STFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGF 100 (587)
Q Consensus 21 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (587)
..+...+.+ ...+++....+..+.+.+. .+...++....+-.+...|+-++|..........+ ..+..-|..++-.+
T Consensus 9 ~lF~~~lk~-yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 9 ALFRRALKC-YETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHH-HHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHH
Confidence 344444444 4577888888888888774 35566677666667777888888888888887754 45666788888777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHH
Q 038622 101 CKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAV 180 (587)
Q Consensus 101 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 180 (587)
....++++|++.|+.++..+ +.+...|.-+...-++.|+++..........+.. +.....|..++.++.-.|++..|.
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888888874 5566777777777788888888888777777752 224556777777778888888888
Q ss_pred HHHHHHHhCC-CCCChhhHHHHH------HHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHH
Q 038622 181 EILNQMILRD-CSPNTITYNTLI------STLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELF 253 (587)
Q Consensus 181 ~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 253 (587)
.+++...... ..|+...+.... ......|.+++|.+.+...... +......-..-...+.+.+++++|..+|
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 8888877653 234444443322 2233455556665555443322 1111222223344555666666666666
Q ss_pred HHHHHcCCCCCHHhHH-HHHHHHHccCChHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHHHHcC
Q 038622 254 QEMKTKGCQPDEFTYN-MLIDSLCSRGMLEEAL-KLLKEMESSGCARNVVTYNTLIDGFCKLKR-IEEAEEIFDEMEIQG 330 (587)
Q Consensus 254 ~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~ 330 (587)
..++.. .||...|+ .+..++..-.+.-++. .+|....+. .|.......+.-......+ .+....++....+.|
T Consensus 243 ~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 243 RRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 666655 33433333 3333332111222222 333333222 1222222222111121122 222233344444444
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc-
Q 038622 331 ISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIM---EGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIV- 406 (587)
Q Consensus 331 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~- 406 (587)
+|+ ++..+...|-... ..- ++++.+. .+..++.. ..+...- .. -+|.+.
T Consensus 319 ~p~---vf~dl~SLyk~p~---k~~-~le~Lvt~y~~~L~~~~~------------f~~~D~~------~~--E~Pttll 371 (700)
T KOG1156|consen 319 VPS---VFKDLRSLYKDPE---KVA-FLEKLVTSYQHSLSGTGM------------FNFLDDG------KQ--EPPTTLL 371 (700)
T ss_pred CCc---hhhhhHHHHhchh---HhH-HHHHHHHHHHhhcccccC------------CCccccc------cc--CCchHHH
Confidence 332 2222222221111 111 2222211 00000000 0000000 00 022222
Q ss_pred -hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038622 407 -TYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTP-QAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRG 484 (587)
Q Consensus 407 -~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 484 (587)
++..++..+-..|+++.|..+++.+... .|+. +.|..-++.+...|.+++|...++++.+.+ .+|...-...+.-
T Consensus 372 Wt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKY 448 (700)
T KOG1156|consen 372 WTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKY 448 (700)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHH
Confidence 2334555666677777777777766663 3332 455555666777777777777777777654 3443333244444
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCCC--C---HH-HH--HHHHHHHHccCCHhHHHHHHHHHHh
Q 038622 485 LCNGGGPIGEAVDFVIEMLERGFLP--E---FS-SF--YMLAEGLVSLGKEETLVELIDMVMD 539 (587)
Q Consensus 485 ~~~~~~~~~~A~~~~~~~~~~~~~p--~---~~-~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 539 (587)
..++.. .++|.+...+..+.|... + .. .| ..-|.+|.++|++..|++-+..+.+
T Consensus 449 mLrAn~-i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 449 MLRANE-IEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred HHHccc-cHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 445555 677777776666544211 1 11 11 1234566666666666665555443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-12 Score=113.92 Aligned_cols=286 Identities=14% Similarity=0.094 Sum_probs=194.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHH
Q 038622 208 ENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKL 287 (587)
Q Consensus 208 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 287 (587)
.|+|.+|+.+..+..+.+.. ....|..-+++....||.+.+-.++.++.+..-.++........+.....|+...|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 57777777777776665433 23344445556666677777777777776652234445555666667777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 038622 288 LKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNS-------VTYNTLIDGLCKSRRVEDAAQLMDQ 360 (587)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~ 360 (587)
+.++...+ +..+.+.....++|.+.|++.....++..+.+.+.-.++ .+|..++.-....+..+.-...|+.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 77777665 566667777777777777777777777777776644333 2444444444444555555556666
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 038622 361 MIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTP 440 (587)
Q Consensus 361 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 440 (587)
.... .+.++..-..++.-+.+.|+.++|.++.++..+.+.+|+ ....-.+.+-++...-++..++..+..+. ++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~-~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE-DP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC-Ch
Confidence 5543 344566666777778888888888888888887765554 12222345667777777777777766333 56
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 038622 441 QAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 504 (587)
..+..++..|.+.+.|.+|...|+.+++. .|+..++..++.++.+.|+ ..+|.+..++.+.
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~-~~~A~~~r~e~L~ 389 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGE-PEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCC-hHHHHHHHHHHHH
Confidence 77888888888888888888888888774 6788888888888888888 8888888888774
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3e-14 Score=119.83 Aligned_cols=237 Identities=12% Similarity=0.006 Sum_probs=201.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 038622 301 VTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYY 380 (587)
Q Consensus 301 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 380 (587)
.--..++.+|.+.|.+.+|.+.++..+++ .|.+.+|..+.++|.+..++..|+.++.+-++. .+.+..........+
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHH
Confidence 33467899999999999999999998876 577788999999999999999999999998885 344555666777888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHH
Q 038622 381 CRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAM 460 (587)
Q Consensus 381 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 460 (587)
...++.++|.++|+...+.... +.+....++..|.-.++++.|+.++++++..|.. +++.|++++-+|.-.++++-++
T Consensus 301 eam~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhH
Confidence 8899999999999999886433 6777777788888899999999999999999887 8999999999999999999999
Q ss_pred HHHHHHHhcCCCC--CHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 038622 461 RLFREMMEKADPP--DALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVM 538 (587)
Q Consensus 461 ~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 538 (587)
..|++++..--.| ....|..+.......|+ +.-|.+.|+-++..+ ....+++.+|+-.-.+.|+.++|+.+++.+.
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD-~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGD-FNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccc-hHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 9999998853223 34568888888888899 999999999998753 2368899999999999999999999999999
Q ss_pred hcCCCC
Q 038622 539 DKAKFS 544 (587)
Q Consensus 539 ~~~~~~ 544 (587)
...|.-
T Consensus 457 s~~P~m 462 (478)
T KOG1129|consen 457 SVMPDM 462 (478)
T ss_pred hhCccc
Confidence 988875
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.4e-12 Score=123.24 Aligned_cols=534 Identities=13% Similarity=0.029 Sum_probs=273.5
Q ss_pred hhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCChhhHHHHHHH
Q 038622 21 STFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGC-LVTNVTVNVLVHG 99 (587)
Q Consensus 21 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~ 99 (587)
..|..|...|....++.+|.+.|+.+-+.+ +.+...+......|++..+.+.|..+.-...+... ..-...|..++-.
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 456666666666666666666666666555 45556666666666666666666666433333221 0011223334444
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCCHHH
Q 038622 100 FCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPD-VFTYNSLISGLCKLGEVEE 178 (587)
Q Consensus 100 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 178 (587)
|...++...|...|+..++.. |.|...|..++.+|.+.|++..|.++|.++... .|+ ...-......-+..|.+.+
T Consensus 572 yLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHH
Confidence 555666666666666666553 445666666666666666666666666666553 222 2222223334455666666
Q ss_pred HHHHHHHHHhCC------CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHh-------CCCCCCHhhHHHHHHHHHhcCC
Q 038622 179 AVEILNQMILRD------CSPNTITYNTLISTLCKENQVEEATELARVLTS-------KGILPDVCTFNSLIQGLCLTSN 245 (587)
Q Consensus 179 a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~ 245 (587)
++..+..+.... ...-..++..++..+...|=..++.+.++...+ .....+...|..+..+
T Consensus 649 ald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asda------ 722 (1238)
T KOG1127|consen 649 ALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDA------ 722 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH------
Confidence 666665554321 000111222222222222222222222222211 1101111111111111
Q ss_pred hHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCCh---H---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-------
Q 038622 246 FDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGML---E---EALKLLKEMESSGCARNVVTYNTLIDGFCK------- 312 (587)
Q Consensus 246 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~------- 312 (587)
..+|-... .+ .|+......+..-....+.. + -+.+.+-.-.+. ..+...|..++..|.+
T Consensus 723 ----c~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl--~~~~~~WyNLGinylr~f~~l~e 794 (1238)
T KOG1127|consen 723 ----CYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL--AIHMYPWYNLGINYLRYFLLLGE 794 (1238)
T ss_pred ----HHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH--hhccchHHHHhHHHHHHHHHcCC
Confidence 11111111 00 11111111111111111111 1 011111111111 1123344444444433
Q ss_pred -cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 038622 313 -LKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAAD 391 (587)
Q Consensus 313 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 391 (587)
..+...|+..+.+..+.. ..+...|+.+.-+ ...|++.-|...|-+.+... +....+|..+...+....+++.|..
T Consensus 795 t~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~ 871 (1238)
T KOG1127|consen 795 TMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEP 871 (1238)
T ss_pred cchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhH
Confidence 123346777777766553 4466667666655 66678887877777766642 2355577778778888888999999
Q ss_pred HHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH--Hc--CCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038622 392 IVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQ--MK--GIVLTPQAYNPVIQALFRRKRTTEAMRLFREMM 467 (587)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 467 (587)
.|...+...+. +...|...+......|+.-++..+|..-. .. |-.+...-|..........|+.++-+...+++.
T Consensus 872 af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~ 950 (1238)
T KOG1127|consen 872 AFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKIS 950 (1238)
T ss_pred HHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhh
Confidence 88888875433 45556555556667788888888877622 21 333344445555555566666666555444332
Q ss_pred h---------cCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---c--CCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 038622 468 E---------KADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLE---R--GFLPEFSSFYMLAEGLVSLGKEETLVEL 533 (587)
Q Consensus 468 ~---------~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~---~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 533 (587)
. .+.|.+...|...+...-+.+. +.+|.....+++. . ....++.+-...++++...|.++.|...
T Consensus 951 sAs~al~~yf~~~p~~~fAy~~~gstlEhL~e-y~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a 1029 (1238)
T KOG1127|consen 951 SASLALSYYFLGHPQLCFAYAANGSTLEHLEE-YRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKA 1029 (1238)
T ss_pred hhHHHHHHHHhcCcchhHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhh
Confidence 2 1335555666666666667777 7777777777551 1 1122344556788888888988877766
Q ss_pred HHHHHhcCCCCCchhhhhhhHHHHHHHHHHHHhcchhhhccCchhh
Q 038622 534 IDMVMDKAKFSDRETSMVRGFLKIRKFQDALATFGDILDSRMPRKT 579 (587)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 579 (587)
+........+......+. .+-.|+|.++++.|++++.......+
T Consensus 1030 ~~~~~~evdEdi~gt~l~--lFfkndf~~sl~~fe~aLsis~se~d 1073 (1238)
T KOG1127|consen 1030 SWKEWMEVDEDIRGTDLT--LFFKNDFFSSLEFFEQALSISNSESD 1073 (1238)
T ss_pred hcccchhHHHHHhhhhHH--HHHHhHHHHHHHHHHHHhhhcccccc
Confidence 654332222211122232 36678888888888888776544443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.6e-14 Score=120.21 Aligned_cols=230 Identities=16% Similarity=0.099 Sum_probs=171.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q 038622 94 NVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKL 173 (587)
Q Consensus 94 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 173 (587)
..++.+|.+.|.+.+|.+.|+..++. .|-+.+|..+.++|.+..++..|+.++.+-++. ++.++.....+.+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56777888888888888888887776 566777888888888888888888888777765 444566666677777788
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHH
Q 038622 174 GEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELF 253 (587)
Q Consensus 174 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 253 (587)
++.++|.++|+.+.+.. +.+.++...++..|.-.++++-|+..|++++..|+. ++..|+.+.-+|.-.++++.++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 88888888888877765 556666667777777778888888888888887766 7777777777787788888888877
Q ss_pred HHHHHcCCCCC--HHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 038622 254 QEMKTKGCQPD--EFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQ 329 (587)
Q Consensus 254 ~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 329 (587)
++....--.|+ ...|..+.......|++..|.+.|+-++..+ +.....++.++-.-.+.|++++|..+++.....
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 77766543343 4567777777777788888888887777665 455667777777777778888887777776554
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-12 Score=118.30 Aligned_cols=236 Identities=15% Similarity=0.117 Sum_probs=170.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh-------hHHH
Q 038622 303 YNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKF-------TYNS 375 (587)
Q Consensus 303 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~ 375 (587)
...++++..+..++..|++.+....... .+..-++....+|...|.+..+.......++.|.. ... .+..
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 4567777778888888888888887764 45556666777888888888887777777665432 111 2223
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 038622 376 LLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKR 455 (587)
Q Consensus 376 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 455 (587)
++.++...++++.++..|++.....-.|+ ...+....+++.+..+...-.++.. ...-..-+..+++.|+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~---------~ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPD---------LLSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHH---------HHHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccC
Confidence 44466677888999999988766422222 2333455566666665554433332 2233344788899999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHH
Q 038622 456 TTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELI 534 (587)
Q Consensus 456 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 534 (587)
+..|++.|.+++..+ |.|...|.....++...|. +..|++-.+..++. .| ....|..-+.++..+.+|++|.+.|
T Consensus 374 y~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~-~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay 449 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGE-YPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAY 449 (539)
T ss_pred HHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhh-HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999986 7888889899989999999 99999999999984 56 5788888899999999999999999
Q ss_pred HHHHhcCCCCCc-hhhhhhhHH
Q 038622 535 DMVMDKAKFSDR-ETSMVRGFL 555 (587)
Q Consensus 535 ~~~~~~~~~~~~-~~~~~~~~~ 555 (587)
.++++.+|.... ...+.+|.-
T Consensus 450 ~eale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 450 QEALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHhcCchhHHHHHHHHHHHH
Confidence 999999987733 344444333
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.5e-11 Score=107.89 Aligned_cols=454 Identities=14% Similarity=0.100 Sum_probs=267.0
Q ss_pred HHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 038622 25 ILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEG 104 (587)
Q Consensus 25 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 104 (587)
+=++-+...|++++|.+....++..+ |.+...+..=+.++++.+.|++|+.+.+.-... ......+..-+.+..+.+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcc
Confidence 33566677899999999999999877 778889999999999999999999655443221 112222234555667899
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHH-HHhcCCHHHHHHHH
Q 038622 105 RIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISG-LCKLGEVEEAVEIL 183 (587)
Q Consensus 105 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~ 183 (587)
..++|+..++-.. +.+..+...-.+.+.+.|++++|..+|+.+.+.+.+ +.. ..+.+ +...+---.+. +.
T Consensus 94 k~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d~d---~~~r~nl~a~~a~l~~~-~~ 164 (652)
T KOG2376|consen 94 KLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-DQD---EERRANLLAVAAALQVQ-LL 164 (652)
T ss_pred cHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-hHH---HHHHHHHHHHHHhhhHH-HH
Confidence 9999999988322 224557778889999999999999999999876432 221 11111 11111111111 22
Q ss_pred HHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhC-------CCCCCH-------hhHHHHHHHHHhcCChHHH
Q 038622 184 NQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSK-------GILPDV-------CTFNSLIQGLCLTSNFDVA 249 (587)
Q Consensus 184 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~-------~~~~~l~~~~~~~~~~~~a 249 (587)
+..... ...+-..+...+..++..|++.+|+++++...+. +...+. ..-..+..++...|+..+|
T Consensus 165 q~v~~v-~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 165 QSVPEV-PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HhccCC-CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 222221 1223344556677888999999999999888321 111111 1234456677788999999
Q ss_pred HHHHHHHHHcCCCCCHHhHH----HHHHHHHccCChH-HHHHHHHHHHHC-----------CCCCCHHHHHHHHHHHHcc
Q 038622 250 MELFQEMKTKGCQPDEFTYN----MLIDSLCSRGMLE-EALKLLKEMESS-----------GCARNVVTYNTLIDGFCKL 313 (587)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~-~a~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~ 313 (587)
..+|...++.. ++|..... .++..-....-++ .++..++..... ........-+.++..| .
T Consensus 244 ~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--t 320 (652)
T KOG2376|consen 244 SSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--T 320 (652)
T ss_pred HHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--h
Confidence 99999999876 45543322 2222211111111 112222211110 0000011111222222 2
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 038622 314 KRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLC--KSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAAD 391 (587)
Q Consensus 314 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 391 (587)
+..+.+.++....... .|.. .+..++.... +...+..+..++....+........+....++.....|+++.|.+
T Consensus 321 nk~~q~r~~~a~lp~~--~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGM--SPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred hhHHHHHHHHHhCCcc--CchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 3344444443332211 2222 2223332222 222467777777777664322223455666777888899999999
Q ss_pred HHH--------HHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCh----HhHHHHHHHHHhcCCHH
Q 038622 392 IVQ--------NMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMK--GIVLTP----QAYNPVIQALFRRKRTT 457 (587)
Q Consensus 392 ~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~----~~~~~l~~~~~~~g~~~ 457 (587)
++. .+.+.+. .+.+...+...+.+.++.+.|..++.++... .-.+.. ..+...+..-.+.|+-+
T Consensus 398 il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ 475 (652)
T KOG2376|consen 398 ILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEE 475 (652)
T ss_pred HHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchH
Confidence 988 3333322 3455666777788888777777777766543 111111 23444455555679999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 038622 458 EAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEM 502 (587)
Q Consensus 458 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~ 502 (587)
+|..+++++.+.. ++|..+...++.+|+... .+.|..+-+.+
T Consensus 476 ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d--~eka~~l~k~L 517 (652)
T KOG2376|consen 476 EASSLLEELVKFN-PNDTDLLVQLVTAYARLD--PEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHHHhC-CchHHHHHHHHHHHHhcC--HHHHHHHhhcC
Confidence 9999999999864 788888888888887765 57777665553
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.6e-11 Score=112.17 Aligned_cols=291 Identities=17% Similarity=0.146 Sum_probs=160.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhc---
Q 038622 63 QGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFT-YNTLVNGLCKV--- 138 (587)
Q Consensus 63 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~--- 138 (587)
..+...|++++|++.++..... +..........+..+.+.|+.++|..+++.+++.+ |+... |..+..+....
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 3445556666666666554433 23334445555566666666666666666666653 33333 33333333111
Q ss_pred --CChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHH-HHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHH
Q 038622 139 --GHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVE-EAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEAT 215 (587)
Q Consensus 139 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 215 (587)
.+.+...++|+++... -|...+...+.-.+..-..+. .+..++...+..|+| .++..+-..|.......-..
T Consensus 89 ~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHH
Confidence 2345555566655543 233333222222222211222 233344444555532 33444444444333333333
Q ss_pred HHHHHHHhC--------------CCCCCH--hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccC
Q 038622 216 ELARVLTSK--------------GILPDV--CTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRG 279 (587)
Q Consensus 216 ~~~~~~~~~--------------~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 279 (587)
+++..+... .-+|.. .++..+...|...|++++|+++.++.+... |..+..|..-++.+-..|
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCC
Confidence 343333221 012233 234555667778888888888888888773 334677777888888888
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH--------HHHHHHHHHHHhcCCH
Q 038622 280 MLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNS--------VTYNTLIDGLCKSRRV 351 (587)
Q Consensus 280 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~ 351 (587)
++.+|.+.++.+...+ ..|...-+..+..+.+.|++++|.+++......+..|.. +.....+.+|.+.|++
T Consensus 243 ~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 243 DLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 8888888888887776 445555566677777888888888888777655432221 1223455677888888
Q ss_pred HHHHHHHHHHHH
Q 038622 352 EDAAQLMDQMIM 363 (587)
Q Consensus 352 ~~A~~~~~~~~~ 363 (587)
..|++.|..+.+
T Consensus 322 ~~ALk~~~~v~k 333 (517)
T PF12569_consen 322 GLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHH
Confidence 888877776665
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-10 Score=107.01 Aligned_cols=460 Identities=13% Similarity=0.086 Sum_probs=272.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 038622 57 TFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLC 136 (587)
Q Consensus 57 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 136 (587)
....=++.+..+|++++|.+...+++..+ |.+..++..-+.++.+.+++++|+.+.+.-... ..+..-+..-+.+..
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHH
Confidence 33444566778999999999999999886 778888888888999999999999766543321 111111123344555
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHhccCCHHHHH
Q 038622 137 KVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNT-ITYNTLISTLCKENQVEEAT 215 (587)
Q Consensus 137 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~ 215 (587)
+.+..++|+..++.... .+..+...-+..+.+.|++++|..+|+.+.+.+.+... .....++..-. ...+.
T Consensus 91 rlnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~ 162 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ 162 (652)
T ss_pred HcccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH
Confidence 88999999999983322 23446677788899999999999999999887533211 11122211111 01111
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-------CCC--CH-----HhHHHHHHHHHccCCh
Q 038622 216 ELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKG-------CQP--DE-----FTYNMLIDSLCSRGML 281 (587)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~--~~-----~~~~~l~~~~~~~~~~ 281 (587)
+.+..... ...+-..+....-.+...|++.+|+++++...+.+ -.. +. ..-..++.++...|+.
T Consensus 163 -~~q~v~~v-~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 163 -LLQSVPEV-PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred -HHHhccCC-CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 12211111 11122223334445678899999999999883311 011 11 1234556677789999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHccCCH-H-HHHHHHHHHHHcCC---------CCCHHHHHHHHHHHH
Q 038622 282 EEALKLLKEMESSGCARNVVTY----NTLIDGFCKLKRI-E-EAEEIFDEMEIQGI---------SRNSVTYNTLIDGLC 346 (587)
Q Consensus 282 ~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~-~-~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~~ 346 (587)
.+|..+|..+++.. ++|.... +.++.+ ....++ + .++..++....... ..-..++...+-...
T Consensus 241 ~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l 318 (652)
T KOG2376|consen 241 AEASSIYVDIIKRN-PADEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL 318 (652)
T ss_pred HHHHHHHHHHHHhc-CCCchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999876 3444322 222221 111111 1 12222222111100 000111111111112
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH-H-HhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHH
Q 038622 347 KSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTY-Y-CRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVA 424 (587)
Q Consensus 347 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 424 (587)
..+..+.+.++...... ..|.. .+..++.. . .+...+..+..++.......+.....+...++......|+++.|
T Consensus 319 ~tnk~~q~r~~~a~lp~--~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 319 FTNKMDQVRELSASLPG--MSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred HhhhHHHHHHHHHhCCc--cCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH
Confidence 22333444443333221 12222 23333332 2 22235777888888777654333345666777888899999999
Q ss_pred HHHHH--------HHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCCCHHHHHHHHHHHHhCCC
Q 038622 425 SKLLR--------SIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEK------ADPPDALTYKHVFRGLCNGGG 490 (587)
Q Consensus 425 ~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~ 490 (587)
++++. .+.+. .-.+.+...+...+.+.++.+.|..++.+++.. +-..-...+...+..-.+.|+
T Consensus 396 ~~il~~~~~~~~ss~~~~--~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~ 473 (652)
T KOG2376|consen 396 LEILSLFLESWKSSILEA--KHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGN 473 (652)
T ss_pred HHHHHHHhhhhhhhhhhh--ccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCc
Confidence 99999 44443 334566677788888888888888888887762 111112233334444456687
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 038622 491 PIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMD 539 (587)
Q Consensus 491 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 539 (587)
-++|...++++++.+ +++.++...+..+|.+. +.+.|..+-+.+.-
T Consensus 474 -~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~p 519 (652)
T KOG2376|consen 474 -EEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKLPP 519 (652)
T ss_pred -hHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcCCC
Confidence 999999999999853 45899999999999888 58889888777543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=6e-13 Score=131.37 Aligned_cols=269 Identities=10% Similarity=0.066 Sum_probs=199.6
Q ss_pred CCCHhhHHHHHHHHHH-----cCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHh---------cCChhHHHHHHHHHH
Q 038622 17 KPDVSTFNILIKALCK-----AHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIE---------EGNLDGALRIREQMV 82 (587)
Q Consensus 17 ~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~ 82 (587)
+.+...|...+++... .+++++|+..|+++.+.. |.++..|..++.++.. .+++++|...+++++
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 5566667666665322 356999999999999886 5667777777765542 345899999999999
Q ss_pred HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccc
Q 038622 83 EHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFT 162 (587)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 162 (587)
+.+ |.+...+..++.++...|++++|...|+++++.+ |.+...+..++..+...|++++|+..++++.+.++. +...
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 987 6688889899999999999999999999999985 556778899999999999999999999999987422 2333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 038622 163 YNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCL 242 (587)
Q Consensus 163 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 242 (587)
+..++..+...|++++|+..++++.....+.++..+..++.++...|++++|...+.++.... +.+......+...+..
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhc
Confidence 444555677789999999999998876434456667888999999999999999999876652 2234445556666677
Q ss_pred cCChHHHHHHHHHHHHcC-CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 038622 243 TSNFDVAMELFQEMKTKG-CQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSG 295 (587)
Q Consensus 243 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 295 (587)
.| +.+...++.+.+.. ..+.. .......+.-.|+.+.+..+ +++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNN--PGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcC--chHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 77 47777777766531 11211 22244555666777777666 7776653
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.9e-12 Score=126.62 Aligned_cols=270 Identities=14% Similarity=0.061 Sum_probs=197.2
Q ss_pred CCCHHHHHHHHHHHH-----hcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh---------cCCHHHHHHHHHHHH
Q 038622 52 APDERTFTTLMQGLI-----EEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCK---------EGRIEDALSFIQEMV 117 (587)
Q Consensus 52 ~~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~ 117 (587)
+.+...|...+++.. ..+++++|+..|+++++.+ |.+...+..++.++.. .+++++|...+++++
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 566776666666532 2345789999999999986 5566777777766542 245899999999999
Q ss_pred HCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh
Q 038622 118 SEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTIT 197 (587)
Q Consensus 118 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 197 (587)
+.+ |.+..++..++.++...|++++|...|+++.+.+ +.+...+..++..+...|++++|+..++++...+ |.+...
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~ 408 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAA 408 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhh
Confidence 985 6677888899999999999999999999999974 3356778889999999999999999999999886 334444
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHc
Q 038622 198 YNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCS 277 (587)
Q Consensus 198 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 277 (587)
+..++..+...|++++|...++++.....+.++..+..+..++...|++++|...+.++.... +.+......+...+..
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhc
Confidence 445555677789999999999998876433355567778888999999999999999876652 3334555666667777
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 038622 278 RGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQG 330 (587)
Q Consensus 278 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 330 (587)
.| +.|...++.+.+... ............+.-.|+.+.+... +++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQ-RIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhh-HhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 77 477777777655321 1111112244455666777766655 7776543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.9e-11 Score=110.63 Aligned_cols=443 Identities=12% Similarity=0.038 Sum_probs=229.1
Q ss_pred HHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 038622 27 IKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRI 106 (587)
Q Consensus 27 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 106 (587)
.++.+..|+++.|+..|.+++..+ |+|...|..-..+|+..|+|++|++--.+.++.+ |.-+..|...+.++.-.|++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccH
Confidence 466788999999999999999887 7788889999999999999999999998888876 55667899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC-CHHHHHHHHHH
Q 038622 107 EDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLG-EVEEAVEILNQ 185 (587)
Q Consensus 107 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~ 185 (587)
++|+..|.+-++.. +.+...+..+..++. ...+. +.. ..++..+..+...-...+ -.+.+.....+
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~----~~~~~-----~~~---~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~ 153 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYL----EDYAA-----DQL---FTKPYFHEKLANLPLTNYSLSDPAYVKILE 153 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhh----HHHHh-----hhh---ccCcHHHHHhhcChhhhhhhccHHHHHHHH
Confidence 99999999998873 444455666666651 11111 111 112222222211100000 00111111111
Q ss_pred HHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHH-----HHHhC-------CCCCCHhhHHHHHHHHHhcCChHHHHHHH
Q 038622 186 MILRDCSPNTITYNTLISTLCKENQVEEATELAR-----VLTSK-------GILPDVCTFNSLIQGLCLTSNFDVAMELF 253 (587)
Q Consensus 186 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-----~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 253 (587)
....+ +.+.. .+........+...+. ..... +..|. .......-..++..+-.+
T Consensus 154 ~~~~~-p~~l~-------~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~----~~~~~~~~~~~d~~ee~~-- 219 (539)
T KOG0548|consen 154 IIQKN-PTSLK-------LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPC----KQEHNGFPIIEDNTEERR-- 219 (539)
T ss_pred HhhcC-cHhhh-------cccccHHHHHHHHHHhcCccccccccccccCCCCCCcc----cccCCCCCccchhHHHHH--
Confidence 11111 10100 0100000111111000 00000 00110 000000000000000000
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 038622 254 QEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISR 333 (587)
Q Consensus 254 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 333 (587)
. ..-..-...++....+..++..|++.+....... .+...++....+|...|.+..+........+.|. .
T Consensus 220 ---~----k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e 289 (539)
T KOG0548|consen 220 ---V----KEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-E 289 (539)
T ss_pred ---H----HHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-H
Confidence 0 0011223344555555556666666666655543 3444455555556665555555555544444331 1
Q ss_pred CHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc
Q 038622 334 NSV-------TYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIV 406 (587)
Q Consensus 334 ~~~-------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 406 (587)
... .+..++.++.+.++++.++..|.+.+.....|+. .......+++....+...-.++.. ..
T Consensus 290 ~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~ 359 (539)
T KOG0548|consen 290 LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AE 359 (539)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HH
Confidence 111 1122333455566777777777776654333222 122233444444444433322211 11
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038622 407 TYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLC 486 (587)
Q Consensus 407 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (587)
....-+..+.+.|++..|+..|.+++..++. |...|.+.+.+|.+.|.+..|++-.+..++.+ |+....|..-+.++.
T Consensus 360 e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~ 437 (539)
T KOG0548|consen 360 EEREKGNEAFKKGDYPEAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALR 437 (539)
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHH
Confidence 2222355566677777777777777766533 55667777777777777777777777777653 444555555555666
Q ss_pred hCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHc
Q 038622 487 NGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVS 523 (587)
Q Consensus 487 ~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 523 (587)
...+ |+.|.+.|.++++. .| +..+...+.+++..
T Consensus 438 ~mk~-ydkAleay~eale~--dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 438 AMKE-YDKALEAYQEALEL--DPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHH-HHHHHHHHHHHHhc--CchhHHHHHHHHHHHHH
Confidence 6666 77777777777763 35 44455555555554
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.1e-10 Score=109.22 Aligned_cols=297 Identities=18% Similarity=0.185 Sum_probs=196.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHH-HHHHHH
Q 038622 93 VNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNS-LISGLC 171 (587)
Q Consensus 93 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~ 171 (587)
.......+...|++++|++.++.-.+. +..........+..+.+.|+.++|..+|..++..+ |+...|.. +..+..
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHh
Confidence 334556678889999999999886654 33334566778889999999999999999999974 45444444 444432
Q ss_pred h-----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHH-HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 038622 172 K-----LGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVE-EATELARVLTSKGILPDVCTFNSLIQGLCLTSN 245 (587)
Q Consensus 172 ~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 245 (587)
. ..+.+...++|+++...- |...+...+.-.+..-..+. .+...+......|+|+ +|..+-..|.....
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K 158 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEK 158 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhH
Confidence 2 235677788888887653 33333333322222222333 3445666667777653 45555445554444
Q ss_pred hHHHHHHHHHHHHc----C----------CCCCH--HhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038622 246 FDVAMELFQEMKTK----G----------CQPDE--FTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDG 309 (587)
Q Consensus 246 ~~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 309 (587)
..-..+++...... + -+|.. .++..++..|...|++++|++++++++... |..+..|..-+..
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~Kari 237 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARI 237 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 44444454444321 1 12333 344667788888899999999999888875 4457778888888
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh------h--HHHHHHHHH
Q 038622 310 FCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKF------T--YNSLLTYYC 381 (587)
Q Consensus 310 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~--~~~l~~~~~ 381 (587)
+-..|++.+|.+.++.+...+ ..|..+-+..+..+.+.|+.++|.+.+......+..|... . ....+.+|.
T Consensus 238 lKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~ 316 (517)
T PF12569_consen 238 LKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYL 316 (517)
T ss_pred HHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 889999999999998888775 4466666667778888899999998888887655433221 1 234467788
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 038622 382 RAGDIKRAADIVQNMTSN 399 (587)
Q Consensus 382 ~~~~~~~A~~~~~~~~~~ 399 (587)
+.|++..|++.|..+.+.
T Consensus 317 r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 317 RQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHhhHHHHHHHHHHHHHH
Confidence 888888888887776653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.9e-12 Score=112.61 Aligned_cols=199 Identities=13% Similarity=0.130 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHH
Q 038622 336 VTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGL 415 (587)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 415 (587)
..+..++..+...|++++|...+++++... +.+...+..++..+...|++++|...+++..+.... +...+..++..+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHH
Confidence 344445555555555555555555555432 123344445555555555555555555555543222 333444555555
Q ss_pred HhcCChHHHHHHHHHHHHcCC-CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHH
Q 038622 416 CKAGRVEVASKLLRSIQMKGI-VLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGE 494 (587)
Q Consensus 416 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 494 (587)
...|++++|.+.++++..... ......+..++.++...|++++|...+.++++.. +.+...+..++..+...|+ +++
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~-~~~ 187 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQ-YKD 187 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCC-HHH
Confidence 555555555555555554311 1122344555555666666666666666665542 3334445555555555555 666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 038622 495 AVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMD 539 (587)
Q Consensus 495 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 539 (587)
|...++++++. .++++..+..++.++...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 66666665553 122445555555555666666666665555444
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.4e-12 Score=113.89 Aligned_cols=200 Identities=16% Similarity=0.096 Sum_probs=167.5
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 038622 369 DKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQ 448 (587)
Q Consensus 369 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 448 (587)
....+..++..+...|++++|...+++++...+. +...+..++..+...|++++|.+.+++..+..+. +...+..++.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence 3556778889999999999999999999876432 5667888999999999999999999999986443 5678889999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCC
Q 038622 449 ALFRRKRTTEAMRLFREMMEKAD-PPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGK 526 (587)
Q Consensus 449 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 526 (587)
.+...|++++|.+.++++++... +.....+..++..+...|+ +++|...+.++++. .| ++..+..++.++...|+
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~ 184 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGD-FDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQ 184 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCC
Confidence 99999999999999999997522 2344566778888899999 99999999999984 45 67888999999999999
Q ss_pred HhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHHHHHHHHHhcchhhhc
Q 038622 527 EETLVELIDMVMDKAKFS-DRETSMVRGFLKIRKFQDALATFGDILDS 573 (587)
Q Consensus 527 ~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 573 (587)
+++|...++++.+..|.. ..+..++..+...|+.++|....+.+...
T Consensus 185 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 185 YKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999999886654 33566778888999999999887776554
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2e-10 Score=111.30 Aligned_cols=276 Identities=13% Similarity=0.020 Sum_probs=127.3
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 038622 241 CLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAE 320 (587)
Q Consensus 241 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 320 (587)
...|++.-+...|-+.+... +.+..+|..++..+....+++.|...|....... |.+...|...+......|+.-++.
T Consensus 827 sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~ 904 (1238)
T KOG1127|consen 827 SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERL 904 (1238)
T ss_pred hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHH
Confidence 33344444444444433332 3344555555555566666666666666665554 444444544444444555555555
Q ss_pred HHHHHH--HHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---------CCCCCHhhHHHHHHHHHhcCCHH
Q 038622 321 EIFDEM--EIQ--GISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIME---------GLKPDKFTYNSLLTYYCRAGDIK 387 (587)
Q Consensus 321 ~~~~~~--~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~ 387 (587)
.+|..- ... |--+....|.........+|+.++-+...+++... +.+.+...|...+...-+.+.+.
T Consensus 905 ~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~ 984 (1238)
T KOG1127|consen 905 ILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYR 984 (1238)
T ss_pred HHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHH
Confidence 555441 111 11223333333334444555544433333322211 22333445555555555666666
Q ss_pred HHHHHHHHHHHC-CCCCCcc----hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHH
Q 038622 388 RAADIVQNMTSN-GCEPDIV----TYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRL 462 (587)
Q Consensus 388 ~A~~~~~~~~~~-~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 462 (587)
.|.....+.+.. ...-+.. .-..+++.+...|.++.|..-+..... ..+.... ..--..+-.|+++++.+.
T Consensus 985 ~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~---evdEdi~-gt~l~lFfkndf~~sl~~ 1060 (1238)
T KOG1127|consen 985 AALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM---EVDEDIR-GTDLTLFFKNDFFSSLEF 1060 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch---hHHHHHh-hhhHHHHHHhHHHHHHHH
Confidence 666655554321 0001111 222345555666666655443322111 0011111 111112445677777777
Q ss_pred HHHHHhc-CCCCCH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 038622 463 FREMMEK-ADPPDA-LTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSL 524 (587)
Q Consensus 463 ~~~~~~~-~~~~~~-~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 524 (587)
|++++.. +...+. .....++......++ -+.|...+-+..... +|+......|+.++.-.
T Consensus 1061 fe~aLsis~se~d~vvLl~kva~~~g~~~~-k~~A~~lLfe~~~ls-~~~~~sll~L~A~~ild 1122 (1238)
T KOG1127|consen 1061 FEQALSISNSESDKVVLLCKVAVCMGLARQ-KNDAQFLLFEVKSLS-KVQASSLLPLPAVYILD 1122 (1238)
T ss_pred HHHHhhhcccccchhhhhHHHHHHHhhccc-chHHHHHHHHHHHhC-ccchhhHHHHHHHHHHh
Confidence 7777763 112222 223334444455555 666776666666532 34555555555554433
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-11 Score=98.63 Aligned_cols=200 Identities=17% Similarity=0.089 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 038622 56 RTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGL 135 (587)
Q Consensus 56 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 135 (587)
.+...++..|...|++..|..-++++++.+ |.+..+|..++..|.+.|+.+.|.+.|+++++.. +.+..+.+..+..+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 356777888889999999999999998886 6677888888888889999999999999988874 55667888888888
Q ss_pred HhcCChHHHHHHHHHHHhCCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHH
Q 038622 136 CKVGHVKQALEVMDMMLQEGFDP-DVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEA 214 (587)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 214 (587)
|.+|++++|...|+++.....-+ -..++..++-+..+.|+.+.|...|++.+..+ +..+.....+.......|++-.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHH
Confidence 88999999999998888752212 25678888888888899999999998888886 44667778888888888888888
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038622 215 TELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTK 259 (587)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 259 (587)
...++.....+. ++.......++.-...|+.+.+.++=..+.+.
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 888888877755 67777777777777888888877766666554
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-10 Score=98.58 Aligned_cols=305 Identities=13% Similarity=0.086 Sum_probs=192.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHH
Q 038622 232 TFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVV-TYNTLIDGF 310 (587)
Q Consensus 232 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~ 310 (587)
-...+...+...|++..|+..|..+++.+ +.+-.++..-+..|...|+..-|+.-+.+.++. +||.. +...-+..+
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence 34445555555666666666666655542 223344444555566666666666666665554 23332 223334455
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCH--------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 038622 311 CKLKRIEEAEEIFDEMEIQGISRNS--------------VTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSL 376 (587)
Q Consensus 311 ~~~~~~~~a~~~~~~~~~~~~~~~~--------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 376 (587)
.+.|.+++|..-|+.++......+. ......+..+...|+...|+.....+++-. +-|...+..-
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~R 195 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQAR 195 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHH
Confidence 5666666666666665554311110 111222334556688888888888887742 2366667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHh----HHHH------
Q 038622 377 LTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQA----YNPV------ 446 (587)
Q Consensus 377 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l------ 446 (587)
..+|...|++..|+.-++.+.+... .+...+..+...+...|+.+.++...++.++. .|+... |..+
T Consensus 196 akc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~ 272 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKS 272 (504)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHH
Confidence 7888888888888888877766532 35667777778888888888888888888773 444422 1111
Q ss_pred ---HHHHHhcCCHHHHHHHHHHHHhcCCCCCHH---HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 038622 447 ---IQALFRRKRTTEAMRLFREMMEKADPPDAL---TYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAE 519 (587)
Q Consensus 447 ---~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 519 (587)
+......++|.++++..++.++........ .+..+-.++...++ +.+|++...++++ +.| |..++...+.
T Consensus 273 les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~-~~eAiqqC~evL~--~d~~dv~~l~dRAe 349 (504)
T KOG0624|consen 273 LESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQ-FGEAIQQCKEVLD--IDPDDVQVLCDRAE 349 (504)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCC-HHHHHHHHHHHHh--cCchHHHHHHHHHH
Confidence 223445678888888888888864221122 22223334455666 9999999999998 567 5888888999
Q ss_pred HHHccCCHhHHHHHHHHHHhcCCCCCc
Q 038622 520 GLVSLGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 520 ~~~~~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
+|.-...|++|+.-|+++.+.++.+..
T Consensus 350 A~l~dE~YD~AI~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 350 AYLGDEMYDDAIHDYEKALELNESNTR 376 (504)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCcccHH
Confidence 999999999999999999999987743
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2e-10 Score=110.04 Aligned_cols=254 Identities=18% Similarity=0.217 Sum_probs=171.5
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038622 6 TAHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHG 85 (587)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 85 (587)
.++..+...|+.||.++|..+|..|+..|+.+.|- +|..|.-.+.+.+...+..++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 46778888999999999999999999999999998 9999988888888889999999888888887775
Q ss_pred CCCChhhHHHHHHHHHhcCCHHH---HHHHHHHHHH----CCC-CCChh-------------hHHHHHHHHHhcCChHHH
Q 038622 86 CLVTNVTVNVLVHGFCKEGRIED---ALSFIQEMVS----EGF-NPDQF-------------TYNTLVNGLCKVGHVKQA 144 (587)
Q Consensus 86 ~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~----~~~-~~~~~-------------~~~~l~~~~~~~~~~~~a 144 (587)
.|...+|..|..+|...||... ..+.+..+.. .|+ .|... .-...+....-.|-++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 5678899999999999998654 2222222211 111 01010 011222333334445555
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 038622 145 LEVMDMMLQEGFDPDVFTYNSLISGLCK-LGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTS 223 (587)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 223 (587)
++++..+....- +. .....++-+.. ...+++-..+.....+ .+++.++..++.+....|+.+.|..++..|.+
T Consensus 159 lkll~~~Pvsa~--~~-p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 159 LKLLAKVPVSAW--NA-PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHHhhCCcccc--cc-hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 555544332110 10 11111222222 2233443333333332 46888888888888888999999999999999
Q ss_pred CCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCC
Q 038622 224 KGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGM 280 (587)
Q Consensus 224 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 280 (587)
.|++.+.+.|..++-+ .++...+..+..-|...|+.|+..|+...+..+...|.
T Consensus 233 ~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 8888888877777644 77777888888888888888888888777666666443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.2e-11 Score=97.08 Aligned_cols=203 Identities=13% Similarity=0.079 Sum_probs=135.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHH
Q 038622 337 TYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLC 416 (587)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 416 (587)
+...+...|...|++..|..-++++++.. +.+..++..+...|...|+.+.|.+.|+++++..+. +..+.+..+..++
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 34455666777777777777777777642 223446666677777777777777777777765433 5666777777777
Q ss_pred hcCChHHHHHHHHHHHHcCCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHH
Q 038622 417 KAGRVEVASKLLRSIQMKGIVL-TPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEA 495 (587)
Q Consensus 417 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A 495 (587)
..|++++|...|+++.....-+ ...+|.+++.+..+.|+++.|...|++.++.+ +..+.....+.......|+ +-.|
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~-y~~A 192 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGD-YAPA 192 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhccc-chHH
Confidence 7777777777777777652111 23566777777777777777777777777764 4455556666777777777 7777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 496 VDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 496 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
..++++....+ .+..+.+...+++-...|+.+.|.++=..+....|..
T Consensus 193 r~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 193 RLYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 77777776654 3566666666666667777777777777766666655
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-10 Score=99.11 Aligned_cols=309 Identities=14% Similarity=0.104 Sum_probs=239.7
Q ss_pred CCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH-HHHHH
Q 038622 263 PDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSV-TYNTL 341 (587)
Q Consensus 263 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l 341 (587)
.+..-...++..+...|++..|+..|..+.+.+ |.+..++..-+..|...|+-..|+.-+.+.++. .|+-. .-..-
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 344556667888888999999999999999865 556667777788899999999999999988876 45532 23334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCH--hh------------HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcch
Q 038622 342 IDGLCKSRRVEDAAQLMDQMIMEGLKPDK--FT------------YNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVT 407 (587)
Q Consensus 342 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~------------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 407 (587)
...+.+.|.++.|..-|+..++....... .. ....+..+...||...|+.....+++.. ..+...
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l 191 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASL 191 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHH
Confidence 56788999999999999999986332111 11 2223445667899999999999999863 347888
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH-HH---HHH--
Q 038622 408 YGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDAL-TY---KHV-- 481 (587)
Q Consensus 408 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~---~~l-- 481 (587)
+..-+.+|...|++..|+.-++.+.+.... +.+.+..+...+...|+.+.++...++.++. .||.. .| ..+
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkK 268 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKK 268 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHH
Confidence 888899999999999999999988886433 6678889999999999999999999999986 45543 22 111
Q ss_pred -H------HHHHhCCCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-Cchh
Q 038622 482 -F------RGLCNGGGPIGEAVDFVIEMLERGFLPE-----FSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRET 548 (587)
Q Consensus 482 -~------~~~~~~~~~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~ 548 (587)
. ....+.+. |.++++..++.++. .|. ...+..+..++...|++.+|++..+++++..|++ ++..
T Consensus 269 v~K~les~e~~ie~~~-~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~ 345 (504)
T KOG0624|consen 269 VVKSLESAEQAIEEKH-WTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLC 345 (504)
T ss_pred HHHHHHHHHHHHhhhh-HHHHHHHHHHHHhc--CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHH
Confidence 1 12345566 88888888888874 353 2344567788999999999999999999999986 5688
Q ss_pred hhhhhHHHHHHHHHHHHhcchhhhccCchhhhh
Q 038622 549 SMVRGFLKIRKFQDALATFGDILDSRMPRKTFR 581 (587)
Q Consensus 549 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 581 (587)
.-+.+|+-...|+.|+.-|+++.+-++....++
T Consensus 346 dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~r 378 (504)
T KOG0624|consen 346 DRAEAYLGDEMYDDAIHDYEKALELNESNTRAR 378 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHH
Confidence 888999999999999999999999887766543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.2e-09 Score=100.34 Aligned_cols=491 Identities=14% Similarity=0.088 Sum_probs=257.3
Q ss_pred CCCHhhHHHHHH--HHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc--------CC
Q 038622 17 KPDVSTFNILIK--ALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEH--------GC 86 (587)
Q Consensus 17 ~~~~~~~~~l~~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~ 86 (587)
.=|.++-.++++ .|..-|+++.|.+..+.+. +..+|..+++.+.+..++|-|.-.+-.|... ..
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~ 796 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQ 796 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHH
Confidence 346666666663 4677888888888777765 3457888888888888877776665554321 01
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHH
Q 038622 87 LVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSL 166 (587)
Q Consensus 87 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 166 (587)
+.+...-...+......|..++|+.+|++..+. ..+-..|-..|.+++|.++-+.--+. . -..||...
T Consensus 797 q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~y 864 (1416)
T KOG3617|consen 797 QNGEEDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNY 864 (1416)
T ss_pred hCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHH
Confidence 111122333444556778888888888776543 34445566677777777765542221 1 12456666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC----------C---------CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCC
Q 038622 167 ISGLCKLGEVEEAVEILNQMILR----------D---------CSPNTITYNTLISTLCKENQVEEATELARVLTSKGIL 227 (587)
Q Consensus 167 ~~~~~~~g~~~~a~~~~~~~~~~----------~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 227 (587)
+.-+...++.+.|++.|++.-.. + -..+...|.-.+...-..|+.+.|+.+|....+
T Consensus 865 A~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---- 940 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---- 940 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----
Confidence 66666677777777777654211 0 011333444445555556666666666655443
Q ss_pred CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHC----------CC-
Q 038622 228 PDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESS----------GC- 296 (587)
Q Consensus 228 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~~- 296 (587)
|..+.+..+-+|+.++|-++-++ ..|....+.+++.|-..|++.+|..+|.++... +.
T Consensus 941 -----~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~ 1009 (1416)
T KOG3617|consen 941 -----YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMK 1009 (1416)
T ss_pred -----hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 23333334444444444443332 114444555555555555555555555443221 00
Q ss_pred -----------CCCHH-----------HHHHHHHHHHccCCHHHHHHHHHH--------HHH--cCCCCCHHHHHHHHHH
Q 038622 297 -----------ARNVV-----------TYNTLIDGFCKLKRIEEAEEIFDE--------MEI--QGISRNSVTYNTLIDG 344 (587)
Q Consensus 297 -----------~~~~~-----------~~~~l~~~~~~~~~~~~a~~~~~~--------~~~--~~~~~~~~~~~~l~~~ 344 (587)
+.+.. -.......|-+.|.+.+|+++--+ ++. .....|+...+.....
T Consensus 1010 d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadF 1089 (1416)
T KOG3617|consen 1010 DRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADF 1089 (1416)
T ss_pred HHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 00000 011222344555555555543211 111 1223466667777777
Q ss_pred HHhcCCHHHHHHHHHHHHH----------cC----------------CCCCH----hhHHHHHHHHHhcCCHHHHHHHHH
Q 038622 345 LCKSRRVEDAAQLMDQMIM----------EG----------------LKPDK----FTYNSLLTYYCRAGDIKRAADIVQ 394 (587)
Q Consensus 345 ~~~~~~~~~A~~~~~~~~~----------~~----------------~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~ 394 (587)
+....++++|..++-...+ .+ -.|+. ..+..++..|.++|++..|.+-|.
T Consensus 1090 F~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfT 1169 (1416)
T KOG3617|consen 1090 FENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFT 1169 (1416)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHh
Confidence 7777788887776644332 11 11222 246677788999999888877665
Q ss_pred HH----------HHCCCCC----------CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH---
Q 038622 395 NM----------TSNGCEP----------DIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALF--- 451 (587)
Q Consensus 395 ~~----------~~~~~~~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--- 451 (587)
++ ++.|-.. ..++|. ++.-|.+.-++..--++++.+... -....++..|+..|.
T Consensus 1170 QAGdKl~AMraLLKSGdt~KI~FFAn~sRqkEiYI-mAANyLQtlDWq~~pq~mK~I~tF--YTKgqafd~LanFY~~cA 1246 (1416)
T KOG3617|consen 1170 QAGDKLSAMRALLKSGDTQKIRFFANTSRQKEIYI-MAANYLQTLDWQDNPQTMKDIETF--YTKGQAFDHLANFYKSCA 1246 (1416)
T ss_pred hhhhHHHHHHHHHhcCCcceEEEEeeccccceeee-ehhhhhhhcccccChHHHhhhHhh--hhcchhHHHHHHHHHHHH
Confidence 42 2222110 111221 222233333333333333333221 111222333333222
Q ss_pred ------------hcCCHHHHHHHHHHHHhcCCCCCHHHHH----------HHHHHHHhCCCCHHHHHHHHHHHHHcCCCC
Q 038622 452 ------------RRKRTTEAMRLFREMMEKADPPDALTYK----------HVFRGLCNGGGPIGEAVDFVIEMLERGFLP 509 (587)
Q Consensus 452 ------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~----------~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p 509 (587)
..|-.++|-+++.++..++ .....+. ..+........+..+.++..+.+++....|
T Consensus 1247 qiEiee~q~ydKa~gAl~eA~kCl~ka~~k~--~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld 1324 (1416)
T KOG3617|consen 1247 QIEIEELQTYDKAMGALEEAAKCLLKAEQKN--MSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILD 1324 (1416)
T ss_pred HhhHHHHhhhhHHhHHHHHHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCC
Confidence 1234455555565555432 1111122 122222222222566666677777643333
Q ss_pred C----HHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 510 E----FSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 510 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
+ ...+..|+..+....+|..|-+.++.+..+.|.-+
T Consensus 1325 ~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p~~~ 1364 (1416)
T KOG3617|consen 1325 DIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVPNVD 1364 (1416)
T ss_pred CcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCCccc
Confidence 2 45777888999999999999999999999888754
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.48 E-value=7e-11 Score=98.62 Aligned_cols=203 Identities=15% Similarity=0.093 Sum_probs=99.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHH
Q 038622 338 YNTLIDGLCKSRRVEDAAQLMDQMIME-GLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLC 416 (587)
Q Consensus 338 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 416 (587)
++.-...+.+.|+++.|.+.+..|.-. ....|+.|+..+.-.- ..+++.....-+.-+...++. ..+++..++-.|+
T Consensus 244 fNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLllyC 321 (459)
T KOG4340|consen 244 FNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPETFANLLLLYC 321 (459)
T ss_pred hhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChHHHHHHHHHHh
Confidence 333344455666666666666555421 1123445544443221 223444444444444444333 2456666666777
Q ss_pred hcCChHHHHHHHHHHHHcCCC-CChHhHHHHHHHH-HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCC--H
Q 038622 417 KAGRVEVASKLLRSIQMKGIV-LTPQAYNPVIQAL-FRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGP--I 492 (587)
Q Consensus 417 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~ 492 (587)
+..-++.|..++-+-...... .++..|+ ++.++ ...-.+++|.+-++.....- ...-.....-+..-....++ .
T Consensus 322 KNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l-~~kLRklAi~vQe~r~~~dd~a~ 399 (459)
T KOG4340|consen 322 KNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGML-TEKLRKLAIQVQEARHNRDDEAI 399 (459)
T ss_pred hhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccHHHH
Confidence 766666666665432211000 1122222 22332 23445666666555443310 00000011111111111110 2
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCchh
Q 038622 493 GEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDRET 548 (587)
Q Consensus 493 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 548 (587)
..|++-|++.++. -..+....++.|+...++..+.+.|++..+...++++|.
T Consensus 400 R~ai~~Yd~~LE~----YLPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ehd~Wk 451 (459)
T KOG4340|consen 400 RKAVNEYDETLEK----YLPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDHDVWK 451 (459)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHhhhcccceee
Confidence 2334444444442 123456678899999999999999999999988888874
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.5e-10 Score=96.73 Aligned_cols=317 Identities=14% Similarity=0.042 Sum_probs=195.8
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 038622 22 TFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFC 101 (587)
Q Consensus 22 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 101 (587)
-+.+++..+.+..++..|++++..-.+++ +.+......++.+|....++..|-..|+++-..- |.-...-..-+..+.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~-P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH-PELEQYRLYQAQSLY 89 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-hHHHHHHHHHHHHHH
Confidence 46677778889999999999998887775 5577788889999999999999999999998763 323333344567788
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHH
Q 038622 102 KEGRIEDALSFIQEMVSEGFNPDQ--FTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEA 179 (587)
Q Consensus 102 ~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 179 (587)
+.+.+.+|+.+...|... +.. .+...-.......+++..+..+.++.... .+..+....+....+.|+++.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHH
Confidence 899999999998887653 222 12222223344678888999888887643 3667777778888899999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhh----HHHHHHHHHhcCChHHHHHHHHH
Q 038622 180 VEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCT----FNSLIQGLCLTSNFDVAMELFQE 255 (587)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~ 255 (587)
.+-|+.....+-- ++-.-..++-+..+.++++.|++...++.++|+...+.. -...+.+-...+-...+...
T Consensus 164 vqkFqaAlqvsGy-qpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa--- 239 (459)
T KOG4340|consen 164 VQKFQAALQVSGY-QPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA--- 239 (459)
T ss_pred HHHHHHHHhhcCC-CchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH---
Confidence 9999998877422 334445667788899999999999999988775522210 00000000000000000000
Q ss_pred HHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC
Q 038622 256 MKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSG-CARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRN 334 (587)
Q Consensus 256 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 334 (587)
-...++.-...+.+.++++.|.+.+..|.... ...|+.++..++-.- ..+++.+..+-+.-+...+ |..
T Consensus 240 --------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP 309 (459)
T KOG4340|consen 240 --------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFP 309 (459)
T ss_pred --------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCC
Confidence 01223333444555566666666555553221 123444444433221 2233444444444444443 344
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038622 335 SVTYNTLIDGLCKSRRVEDAAQLMDQ 360 (587)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~A~~~~~~ 360 (587)
..+|..++-.|+++.-++.|..++.+
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 55666666666666666666555543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.4e-11 Score=105.87 Aligned_cols=222 Identities=14% Similarity=-0.009 Sum_probs=149.8
Q ss_pred HHHcCChhhHHHHHHhhccCC-CC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 038622 30 LCKAHQIRPAILMMEEMPGYG-LA--PDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRI 106 (587)
Q Consensus 30 ~~~~~~~~~A~~~~~~~~~~~-~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 106 (587)
....+..+.++..+.+++... .. .....|..++..+...|++++|...|+++++.+ |.+...|+.++..+...|++
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNF 114 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCH
Confidence 344466777777777777532 11 124567788888888899999999898888876 56778888888888899999
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 038622 107 EDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQM 186 (587)
Q Consensus 107 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 186 (587)
++|...|+++++.+ |.+..+|..++.++...|++++|.+.|+...+. .|+..............++.++|...|.+.
T Consensus 115 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 115 DAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 99999998888763 445667888888888889999999999888875 343322222223344567888888888765
Q ss_pred HhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhC---CC---CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038622 187 ILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSK---GI---LPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKG 260 (587)
Q Consensus 187 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 260 (587)
.... +++...+ .......|+...+ ..+..+... .+ +.....|..++..+...|++++|...|+++.+.+
T Consensus 192 ~~~~-~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 192 YEKL-DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HhhC-CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 5432 2222221 2223334444333 233333321 11 1134578888888889999999999999888775
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-10 Score=104.57 Aligned_cols=225 Identities=13% Similarity=0.022 Sum_probs=124.1
Q ss_pred ChHHHHHHHHHHHHcC-CCC--CHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 038622 245 NFDVAMELFQEMKTKG-CQP--DEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEE 321 (587)
Q Consensus 245 ~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 321 (587)
..+.++.-+.+++... ..| ....|..++..+...|+.++|...|+++.+.. |.+...+..++..+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4455555555555421 111 13456666667777777777777777776664 4556667777777777777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 038622 322 IFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGC 401 (587)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 401 (587)
.|++..+.. |.+...+..++.++...|++++|.+.+++.+.. .|+..............+++++|...+.+.....
T Consensus 120 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~- 195 (296)
T PRK11189 120 AFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL- 195 (296)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-
Confidence 777776654 445566666666677777777777777777764 2332211111222334556777777775544321
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHc---CC--CC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH
Q 038622 402 EPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMK---GI--VL-TPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDA 475 (587)
Q Consensus 402 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 475 (587)
.|+. +. ........|+...+ ..++.+.+. .+ .| ...+|..++..+...|++++|+..|+++++.+ +++.
T Consensus 196 ~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~ 270 (296)
T PRK11189 196 DKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNF 270 (296)
T ss_pred Cccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchH
Confidence 2221 11 12222334444333 233333321 11 01 23466777777777777777777777777654 4444
Q ss_pred HHHH
Q 038622 476 LTYK 479 (587)
Q Consensus 476 ~~~~ 479 (587)
..+.
T Consensus 271 ~e~~ 274 (296)
T PRK11189 271 VEHR 274 (296)
T ss_pred HHHH
Confidence 4443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1e-10 Score=109.81 Aligned_cols=237 Identities=19% Similarity=0.205 Sum_probs=151.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHc-----C-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CC
Q 038622 302 TYNTLIDGFCKLKRIEEAEEIFDEMEIQ-----G-ISRNS-VTYNTLIDGLCKSRRVEDAAQLMDQMIME-----GL-KP 368 (587)
Q Consensus 302 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~-~~ 368 (587)
+...++..|...|+++.|+..+...... | ..+.. ...+.+...|...+++++|..+|++++.. |. .|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3333444555555555555554444332 0 01111 12223556667777777777777777642 11 11
Q ss_pred C-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCC-cchHHHHHHHHHhcCChHHHHHHHHHHHHc---CCC
Q 038622 369 D-KFTYNSLLTYYCRAGDIKRAADIVQNMTSN-----GC-EPD-IVTYGTLIGGLCKAGRVEVASKLLRSIQMK---GIV 437 (587)
Q Consensus 369 ~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~ 437 (587)
. ..+++.|..+|...|++++|...++++.+. +. .|. ...+..++..+...+++++|..++++..+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 1 235666777777777777777777665441 11 112 223556677777888888888888877654 122
Q ss_pred CC----hHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C--CCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--
Q 038622 438 LT----PQAYNPVIQALFRRKRTTEAMRLFREMMEK-----A--DPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLE-- 504 (587)
Q Consensus 438 ~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-- 504 (587)
++ ..++..++..|...|++++|.+++++++.. + ..-....++.++..|.+.++ +.+|.++|.++..
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~-~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKK-YEEAEQLFEEAKDIM 439 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcc-cchHHHHHHHHHHHH
Confidence 22 257889999999999999999999999874 1 12224566778888877777 8989888888663
Q ss_pred --cCC-CCC-HHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 038622 505 --RGF-LPE-FSSFYMLAEGLVSLGKEETLVELIDMVMD 539 (587)
Q Consensus 505 --~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 539 (587)
.|. .|+ ...|.+|+.+|..+|++++|.++.+.+..
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 121 232 56778999999999999999999998873
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.1e-11 Score=110.29 Aligned_cols=227 Identities=15% Similarity=0.140 Sum_probs=178.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC
Q 038622 306 LIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGD 385 (587)
Q Consensus 306 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 385 (587)
.+.-+.+.|++.+|.-.|+.....+ |.+...|..|+.....+++-..|+..++++++.. +.+...+..|.-.|...|.
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhh
Confidence 4555778899999999999888876 7788899999999999999999999999999853 2356788888888999999
Q ss_pred HHHHHHHHHHHHHCCCCCCcchHHHHH-----------HHHHhcCChHHHHHHHHHHH-HcCCCCChHhHHHHHHHHHhc
Q 038622 386 IKRAADIVQNMTSNGCEPDIVTYGTLI-----------GGLCKAGRVEVASKLLRSIQ-MKGIVLTPQAYNPVIQALFRR 453 (587)
Q Consensus 386 ~~~A~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~ 453 (587)
-..|...++..+...++ |..+. ..+.....+....++|-.+. ..+..+++.+...|+-.|...
T Consensus 369 q~~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls 443 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS 443 (579)
T ss_pred HHHHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc
Confidence 89999999888764211 10000 01111222334444554444 334447888999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHhHHHH
Q 038622 454 KRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPE-FSSFYMLAEGLVSLGKEETLVE 532 (587)
Q Consensus 454 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 532 (587)
|++++|+.+|+.++... |.|...|+.++..++...+ .++|+..|.++++ +.|. ..+.++|+-.|...|.|++|.+
T Consensus 444 ~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~-s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNR-SEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVK 519 (579)
T ss_pred hHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcc-cHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHH
Confidence 99999999999999864 7788899999988877777 9999999999998 6785 7788999999999999999999
Q ss_pred HHHHHHhcCCC
Q 038622 533 LIDMVMDKAKF 543 (587)
Q Consensus 533 ~~~~~~~~~~~ 543 (587)
.|=.++...+.
T Consensus 520 hlL~AL~mq~k 530 (579)
T KOG1125|consen 520 HLLEALSMQRK 530 (579)
T ss_pred HHHHHHHhhhc
Confidence 99999877766
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.7e-10 Score=106.12 Aligned_cols=237 Identities=19% Similarity=0.176 Sum_probs=162.6
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc-----C--C
Q 038622 266 FTYNMLIDSLCSRGMLEEALKLLKEMESS-------GCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQ-----G--I 331 (587)
Q Consensus 266 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~ 331 (587)
.+...++..|...|+++.|+.+++.+++. ..+.=....+.++..|...+++.+|..+|+++... | .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34445666666666666666666665543 11111123344667777778888888777776543 1 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC
Q 038622 332 SRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIME-----GL-KPDKF-TYNSLLTYYCRAGDIKRAADIVQNMTSN---GC 401 (587)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~ 401 (587)
+.-..+++.|..+|.+.|++++|...++++..- +. .|... .++.++..+...+++++|..+++...+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 122345667777788888888887777776541 11 12222 4566677788889999999988876552 12
Q ss_pred CCC----cchHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC--C-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 038622 402 EPD----IVTYGTLIGGLCKAGRVEVASKLLRSIQMK----GIV--L-TPQAYNPVIQALFRRKRTTEAMRLFREMMEK- 469 (587)
Q Consensus 402 ~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 469 (587)
.++ ..++..|+..|...|++++|.+++++++.. +.. + ....++.++..|.+.+++.+|.++|.+...-
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 357889999999999999999999998765 111 1 1356788999999999999999999887652
Q ss_pred ---C--CCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 038622 470 ---A--DPPDALTYKHVFRGLCNGGGPIGEAVDFVIEML 503 (587)
Q Consensus 470 ---~--~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~ 503 (587)
| .|....++..++..|...|+ +++|+++.+.++
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~-~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGN-YEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHccc-HHHHHHHHHHHH
Confidence 2 12334578899999999999 999999999887
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.6e-07 Score=90.53 Aligned_cols=535 Identities=12% Similarity=0.129 Sum_probs=296.7
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038622 6 TAHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYG--LAPDERTFTTLMQGLIEEGNLDGALRIREQMVE 83 (587)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 83 (587)
++-+.++..+ ..+..-|..+.+.|.+.|-+.+|.+.|.++.... +......--.-+..|...-.++.+.+.++.|..
T Consensus 593 qVADAILgN~-mFtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~ 671 (1666)
T KOG0985|consen 593 QVADAILGND-MFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLS 671 (1666)
T ss_pred HHHHHHHhcc-ccccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3344444333 4455668899999999999999998887775431 000000001123345556678999999999999
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----------CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 038622 84 HGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSE-----------GFNPDQFTYNTLVNGLCKVGHVKQALEVMDMML 152 (587)
Q Consensus 84 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 152 (587)
.++..+..+...++.-|...=-.+..+++|+....- ++..|+......+.+.++.|++.+..++.++--
T Consensus 672 ~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn 751 (1666)
T KOG0985|consen 672 ANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESN 751 (1666)
T ss_pred HHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccc
Confidence 888777777777777676665566667777665432 346677788888999999999988887765421
Q ss_pred ------------hCCC---CC-----CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCChhh----
Q 038622 153 ------------QEGF---DP-----DVFTYNSLISGLCKLGEVEEAVEILNQMILRDC-----------SPNTIT---- 197 (587)
Q Consensus 153 ------------~~~~---~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~~~~---- 197 (587)
+... -| |..-+..=+-.|.-.++..+-+++|-+-+.-+- .-+...
T Consensus 752 ~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~L 831 (1666)
T KOG0985|consen 752 CYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNL 831 (1666)
T ss_pred cCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHH
Confidence 1110 01 111111111122222333333333322111100 001111
Q ss_pred ---------HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHH----HHHHH-----H-HH
Q 038622 198 ---------YNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAM----ELFQE-----M-KT 258 (587)
Q Consensus 198 ---------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~----~~~~~-----~-~~ 258 (587)
...|..-.-+.++..--..+++.....|.. ++.+++.+...|...++-.+-. ..|+. . .+
T Consensus 832 i~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEK 910 (1666)
T KOG0985|consen 832 ILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEK 910 (1666)
T ss_pred HHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcc
Confidence 122233333445555555666666677655 7778888877766554322211 01110 0 00
Q ss_pred c-----------C--------CCCCHHhHHHHHHHHHccCChHH---H--------HHHHHHHHHCCC--CCCHHHHHHH
Q 038622 259 K-----------G--------CQPDEFTYNMLIDSLCSRGMLEE---A--------LKLLKEMESSGC--ARNVVTYNTL 306 (587)
Q Consensus 259 ~-----------~--------~~~~~~~~~~l~~~~~~~~~~~~---a--------~~~~~~~~~~~~--~~~~~~~~~l 306 (587)
+ | +-.....|...++.+....+.+- . ..+.++....++ ..++.....-
T Consensus 911 RDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~t 990 (1666)
T KOG0985|consen 911 RDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVT 990 (1666)
T ss_pred cCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHH
Confidence 0 1 00011233444444444443321 1 233444444332 2345556666
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------hhHHHHH
Q 038622 307 IDGFCKLKRIEEAEEIFDEMEIQGIS--RNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDK-------FTYNSLL 377 (587)
Q Consensus 307 ~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~ 377 (587)
..++...+-+.+-+++++++.-.+.+ .+...-+.++-...+ -+.....++.+++-.-. .|+. ..|....
T Consensus 991 VkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD-a~~ia~iai~~~LyEEAF 1068 (1666)
T KOG0985|consen 991 VKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD-APDIAEIAIENQLYEEAF 1068 (1666)
T ss_pred HHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC-chhHHHHHhhhhHHHHHH
Confidence 77777778888888888877543211 112222222222222 23333444444433211 1111 0111111
Q ss_pred HHHH--------------hcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhH
Q 038622 378 TYYC--------------RAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAY 443 (587)
Q Consensus 378 ~~~~--------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 443 (587)
..|- ..++.++|.++-++. ..+..|..++.+-.+.|...+|++-|-++ .|+..|
T Consensus 1069 ~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y 1136 (1666)
T KOG0985|consen 1069 AIFKKFDMNVSAIQVLIENIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNY 1136 (1666)
T ss_pred HHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHH
Confidence 1111 223344444443332 14567888888888888888888766432 266778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 038622 444 NPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVS 523 (587)
Q Consensus 444 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 523 (587)
..++....+.|.|++-.+++..++++.-.|...+ .++.+|++.++ ..+-.++ + ..|+..-....|+-|+.
T Consensus 1137 ~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~r-l~elE~f----i---~gpN~A~i~~vGdrcf~ 1206 (1666)
T KOG0985|consen 1137 LEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNR-LTELEEF----I---AGPNVANIQQVGDRCFE 1206 (1666)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhch-HHHHHHH----h---cCCCchhHHHHhHHHhh
Confidence 8888888899999998888888877644444433 46667778777 6554433 3 25788888888999999
Q ss_pred cCCHhHHHHHHHHHHhcCCCCCchhhhhhhHHHHHHHHHHHHhcchhhhc
Q 038622 524 LGKEETLVELIDMVMDKAKFSDRETSMVRGFLKIRKFQDALATFGDILDS 573 (587)
Q Consensus 524 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 573 (587)
.|.|+.|.-+|.... .|..++..++..|.|..|+..-+++...
T Consensus 1207 ~~~y~aAkl~y~~vS-------N~a~La~TLV~LgeyQ~AVD~aRKAns~ 1249 (1666)
T KOG0985|consen 1207 EKMYEAAKLLYSNVS-------NFAKLASTLVYLGEYQGAVDAARKANST 1249 (1666)
T ss_pred hhhhHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHHHHhhhccch
Confidence 999988888877642 2556667788888888888877776543
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.7e-09 Score=101.61 Aligned_cols=253 Identities=16% Similarity=0.169 Sum_probs=177.2
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 038622 41 LMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEG 120 (587)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 120 (587)
.++..+...|+.||..+|..++..|+..|+.+.|- +|.-|.-.+.+....++..++......++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 35556677788999999999999999999999998 9999988888999999999999988888877665
Q ss_pred CCCChhhHHHHHHHHHhcCChHH---HHHHHHHHHh----CCCCCCcccH---------------HHHHHHHHhcCCHHH
Q 038622 121 FNPDQFTYNTLVNGLCKVGHVKQ---ALEVMDMMLQ----EGFDPDVFTY---------------NSLISGLCKLGEVEE 178 (587)
Q Consensus 121 ~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~----~~~~~~~~~~---------------~~l~~~~~~~g~~~~ 178 (587)
.|.+.+|..+..+|.+.||... +.+.++.+.. .|+. ....+ ...+......|-++.
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvg-s~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVG-SPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccC-cHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 5778899999999999998654 3332222222 1111 11111 122333344455666
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHh-ccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 038622 179 AVEILNQMILRDCSPNTITYNTLISTLC-KENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMK 257 (587)
Q Consensus 179 a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 257 (587)
+++++..+...... .+... .++-.. ....+++-..+.+.+.+ .|++.++..++.+-...|+.+.|..++.+|.
T Consensus 158 llkll~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HHHHHhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 66666555433211 11111 122222 23344444444444443 4788999999999999999999999999999
Q ss_pred HcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 038622 258 TKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKR 315 (587)
Q Consensus 258 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 315 (587)
+.|++.+..-|..++-. .++...++.+++-|...|+.|+..++......+...|.
T Consensus 232 e~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 232 EKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 99988887766666543 77888888889999999999988888776666665444
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.3e-10 Score=106.24 Aligned_cols=229 Identities=11% Similarity=0.063 Sum_probs=181.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcC
Q 038622 340 TLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAG 419 (587)
Q Consensus 340 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 419 (587)
..+.-+.+.|+..+|.-.|+.++... +-+...|..|+......++-..|+..+++..+.++. +...+..|+-.|...|
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEG 367 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhh
Confidence 34556778999999999999999874 336779999999999999999999999999997554 7888999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCChHhHHHHH---------HHHHhcCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHhCC
Q 038622 420 RVEVASKLLRSIQMKGIVLTPQAYNPVI---------QALFRRKRTTEAMRLFREMME-KADPPDALTYKHVFRGLCNGG 489 (587)
Q Consensus 420 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~ 489 (587)
.-..|.+.++..+...++- .|.... .............++|-++.. .+..+|+.....|+-.|...|
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y---~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKY---VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred hHHHHHHHHHHHHHhCccc---hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence 9999999999987642210 010000 011111223344455544444 443477887777887777888
Q ss_pred CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHHHHHHHHHhc
Q 038622 490 GPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFLKIRKFQDALATF 567 (587)
Q Consensus 490 ~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~ 567 (587)
+ +++|++.|+.++. ++| |...|..||..+....+.++|+..|+++++..|.- -+++.++.+|...|.|.+|+++|
T Consensus 445 e-fdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 445 E-FDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred H-HHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 8 9999999999998 678 78889999999999999999999999999999976 45899999999999999999999
Q ss_pred chhhhccCc
Q 038622 568 GDILDSRMP 576 (587)
Q Consensus 568 ~~~~~~~~~ 576 (587)
-.++...++
T Consensus 522 L~AL~mq~k 530 (579)
T KOG1125|consen 522 LEALSMQRK 530 (579)
T ss_pred HHHHHhhhc
Confidence 999887755
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2e-08 Score=95.87 Aligned_cols=413 Identities=16% Similarity=0.134 Sum_probs=241.0
Q ss_pred CCHHHHHHHHH--HHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--------C-C
Q 038622 53 PDERTFTTLMQ--GLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSE--------G-F 121 (587)
Q Consensus 53 ~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~-~ 121 (587)
-|+.+--.++. .|...|+.|.|.+..+.+. +..+|..++..+.+.++.+-|.-.+-.|... . -
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 34555455543 3557788888887766654 3467888888887777666665444333211 0 0
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 038622 122 NPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTL 201 (587)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 201 (587)
.++ ..-...+......|..++|..+|++..+. ..+-..|...|.+++|.++-+.--.. .-..+|...
T Consensus 798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~y 864 (1416)
T KOG3617|consen 798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNY 864 (1416)
T ss_pred CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHH
Confidence 122 33334455556778888888888887763 23445566778888888776542211 123456666
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCCh
Q 038622 202 ISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGML 281 (587)
Q Consensus 202 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 281 (587)
+.-+...++.+.|++.|++... |....+..| .+...+++.|- +. ..|...|.-.+..+-..|+.
T Consensus 865 A~~Lear~Di~~AleyyEK~~~----hafev~rmL-------~e~p~~~e~Yv---~~--~~d~~L~~WWgqYlES~Gem 928 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGV----HAFEVFRML-------KEYPKQIEQYV---RR--KRDESLYSWWGQYLESVGEM 928 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCC----hHHHHHHHH-------HhChHHHHHHH---Hh--ccchHHHHHHHHHHhcccch
Confidence 6777777888888888775421 111111111 12222222221 11 22455666667777788999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038622 282 EEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQM 361 (587)
Q Consensus 282 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 361 (587)
+.|+.+|..+.+ |..+.+..+-.|+.++|-++-++ ..|......+.+.|...|++.+|..+|.++
T Consensus 929 daAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 929 DAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 999999887764 55667777888999988877655 235666778888999999999999988877
Q ss_pred HHcC--C----CCCHhhHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHH-----
Q 038622 362 IMEG--L----KPDKFTYNSLLTYYC--RAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLL----- 428 (587)
Q Consensus 362 ~~~~--~----~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----- 428 (587)
..-. + ..|. -..|...+. ...+.-.|..+|++.-- ........|-+.|.+.+|+++-
T Consensus 994 qafsnAIRlcKEnd~--~d~L~nlal~s~~~d~v~aArYyEe~g~--------~~~~AVmLYHkAGm~~kALelAF~tqQ 1063 (1416)
T KOG3617|consen 994 QAFSNAIRLCKENDM--KDRLANLALMSGGSDLVSAARYYEELGG--------YAHKAVMLYHKAGMIGKALELAFRTQQ 1063 (1416)
T ss_pred HHHHHHHHHHHhcCH--HHHHHHHHhhcCchhHHHHHHHHHHcch--------hhhHHHHHHHhhcchHHHHHHHHhhcc
Confidence 5410 0 0010 111222221 22233344444444211 0112233455556665555441
Q ss_pred ----HHHHH-cCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 038622 429 ----RSIQM-KGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEML 503 (587)
Q Consensus 429 ----~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~ 503 (587)
+-+.+ .+...|+...+.-+..+....++++|..++-.+.+ +...+..|...+ ..--.++.+.|.
T Consensus 1064 f~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~n--v~vtee~aE~mT 1132 (1416)
T KOG3617|consen 1064 FSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRN--VRVTEEFAELMT 1132 (1416)
T ss_pred cHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCC--CchhHHHHHhcC
Confidence 11111 13444667788888888888999999998887775 334444444333 344445555554
Q ss_pred -HcCCCCC----HHHHHHHHHHHHccCCHhHHHHHHHH
Q 038622 504 -ERGFLPE----FSSFYMLAEGLVSLGKEETLVELIDM 536 (587)
Q Consensus 504 -~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 536 (587)
.++-.|+ ...+..++.+|.++|.|..|.+-|.+
T Consensus 1133 p~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1133 PTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred cCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 2211232 45667888899999988888776644
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.7e-08 Score=94.00 Aligned_cols=200 Identities=14% Similarity=0.064 Sum_probs=96.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCc--chHHHHHHHHH
Q 038622 340 TLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCE-PDI--VTYGTLIGGLC 416 (587)
Q Consensus 340 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~--~~~~~l~~~~~ 416 (587)
.+...+...|++++|...+++++... +.+...+..+..++...|++++|...+++....... |+. ..+..++..+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 44445556666666666666666542 223444555556666666666666666665553211 111 12334556666
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCh-HhH-H--HHHHHHHhcCCHHHHHHH--HHHH-Hhc-CCCCCHHHHHHHHHHHHhC
Q 038622 417 KAGRVEVASKLLRSIQMKGIVLTP-QAY-N--PVIQALFRRKRTTEAMRL--FREM-MEK-ADPPDALTYKHVFRGLCNG 488 (587)
Q Consensus 417 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~-~--~l~~~~~~~g~~~~A~~~--~~~~-~~~-~~~~~~~~~~~l~~~~~~~ 488 (587)
..|++++|..+++++....+.... ... . .+...+...|....+.+. +... ... ..+............+...
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA 277 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence 666666666666665432111111 100 1 122223333332222222 1111 110 0011111112344455666
Q ss_pred CCCHHHHHHHHHHHHHcCCC-------C-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcC
Q 038622 489 GGPIGEAVDFVIEMLERGFL-------P-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKA 541 (587)
Q Consensus 489 ~~~~~~A~~~~~~~~~~~~~-------p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 541 (587)
|+ .++|...++.+...... . ........+.++...|++++|.+.+..++...
T Consensus 278 ~~-~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 278 GD-KDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred CC-HHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 66 77777777776532111 0 23334456667778888888888887777544
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.7e-08 Score=95.40 Aligned_cols=199 Identities=12% Similarity=0.112 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-C-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 038622 55 ERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLV-T-NVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLV 132 (587)
Q Consensus 55 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 132 (587)
+..+..+...+...|+.+.+...+....+..... + .......+..+...|++++|...+++++... |.+...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 3344444455555555555555555444332111 1 1112222334455566666666666655542 323323221 1
Q ss_pred HHHHh----cCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 038622 133 NGLCK----VGHVKQALEVMDMMLQEGFDPD-VFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCK 207 (587)
Q Consensus 133 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (587)
..+.. .+....+.+.++.... ..|+ ......++..+...|++++|...+++..... +.+...+..++.++..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~ 160 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAP--ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCc--CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 11111 2333333333332111 1111 2223334455566666666666666666654 3345555666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CC--HhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038622 208 ENQVEEATELARVLTSKGIL-PD--VCTFNSLIQGLCLTSNFDVAMELFQEMKT 258 (587)
Q Consensus 208 ~~~~~~a~~~~~~~~~~~~~-~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 258 (587)
.|++++|...+++....... ++ ...+..+...+...|++++|..+++++..
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 66666666666665553211 11 12334555666666667777666666543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.3e-08 Score=92.61 Aligned_cols=62 Identities=13% Similarity=-0.061 Sum_probs=39.8
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCchhhh
Q 038622 485 LCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDRETSM 550 (587)
Q Consensus 485 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 550 (587)
.+..+. ++-|.++.+-+.+. ..+.+...++..+...|++++|-+.|-.+++.+.-+-+|..-
T Consensus 973 a~d~~a-fd~afdlari~~k~---k~~~vhlk~a~~ledegk~edaskhyveaiklntynitwcqa 1034 (1636)
T KOG3616|consen 973 AADNCA-FDFAFDLARIAAKD---KMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQA 1034 (1636)
T ss_pred hhcccc-hhhHHHHHHHhhhc---cCccchhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhc
Confidence 344455 66666655555432 234455566777778888888888888888887776555443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-06 Score=86.43 Aligned_cols=262 Identities=13% Similarity=0.129 Sum_probs=136.0
Q ss_pred HHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038622 265 EFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDG 344 (587)
Q Consensus 265 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 344 (587)
+..|..++.+..+.|...+|++-|-++ .|+..|..++....+.|.+++-.+.+..+.+....| .+=..++-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~--~id~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP--YIDSELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc--cchHHHHHH
Confidence 345566666666666666665554332 234455556666666666666666555554443222 223345555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHH
Q 038622 345 LCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVA 424 (587)
Q Consensus 345 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 424 (587)
|++.++..+..+++ ..|+.......+.-|...+.++.|.-+|... ..|..|+..+...|++..|
T Consensus 1176 yAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred HHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHH
Confidence 66555554443332 1345555555555555555555555544332 2345555555555666655
Q ss_pred HHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 038622 425 SKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 504 (587)
...-+++. +..+|..+..+|...+.+.-|. +.-..+-....-+..++..|...|- +++-+.+++..+-
T Consensus 1240 VD~aRKAn------s~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGy-FeElIsl~Ea~LG 1307 (1666)
T KOG0985|consen 1240 VDAARKAN------STKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGY-FEELISLLEAGLG 1307 (1666)
T ss_pred HHHhhhcc------chhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCc-HHHHHHHHHhhhc
Confidence 55444322 3345555555555544443321 2222222334445566666666676 7777777777663
Q ss_pred cCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCC---------CCchhhhhhhHHHHHHHHHHHH
Q 038622 505 RGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKF---------SDRETSMVRGFLKIRKFQDALA 565 (587)
Q Consensus 505 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~A~~ 565 (587)
+.- ....+..|+-.|.+- ++++-.+.++-....-.- ...|..+...|.+...|+.|.-
T Consensus 1308 --LERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1308 --LERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAAL 1375 (1666)
T ss_pred --hhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 222 455566666666554 455555555544322211 1236666666777777776653
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.1e-07 Score=88.10 Aligned_cols=165 Identities=18% Similarity=0.170 Sum_probs=67.1
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038622 277 SRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQ 356 (587)
Q Consensus 277 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 356 (587)
....+.+|+.+++.+.... .....|..++..|...|+++.|.++|.+.- .++..+.+|.+.|+|.+|.+
T Consensus 744 ~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHH
Confidence 3344444444444444331 122233344444555555555555443221 22333444555555555544
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038622 357 LMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGI 436 (587)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 436 (587)
+-++... .......|..-..-.-.+|.+.+|.++|-.+.. |+. .+.+|-+.|..+..+++.++-..
T Consensus 813 la~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~-----aiqmydk~~~~ddmirlv~k~h~--- 878 (1636)
T KOG3616|consen 813 LAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK-----AIQMYDKHGLDDDMIRLVEKHHG--- 878 (1636)
T ss_pred HHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chH-----HHHHHHhhCcchHHHHHHHHhCh---
Confidence 4443321 111222233333333444444444444432211 221 23344444554444444433221
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 038622 437 VLTPQAYNPVIQALFRRKRTTEAMRLFREM 466 (587)
Q Consensus 437 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 466 (587)
..-..+...++.-+...|+...|...|-++
T Consensus 879 d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 879 DHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred hhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 111233444455555555555555544443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.26 E-value=7e-10 Score=98.42 Aligned_cols=252 Identities=15% Similarity=0.134 Sum_probs=132.4
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038622 275 LCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDA 354 (587)
Q Consensus 275 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 354 (587)
+.-.|++..++.-.+ ......+........+.+++...|+++.++ .++.... +|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 344555655554433 211111112223344555566666555433 2222222 34444444443333332333444
Q ss_pred HHHHHHHHHcCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038622 355 AQLMDQMIMEGLKP-DKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQM 433 (587)
Q Consensus 355 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 433 (587)
+.-+++.+.....+ +.......+..+...|++++|++++... .+.+.....+.++.+.++++.|.+.++.+.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44443333222221 1222222233455567777776666432 2445555566777777777777777777766
Q ss_pred cCCCCChHhHHHHHHHHH----hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC
Q 038622 434 KGIVLTPQAYNPVIQALF----RRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP 509 (587)
Q Consensus 434 ~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p 509 (587)
. . +..+...++.++. ...++.+|..+|+++.+. .++++..++.++.+....|+ +++|.+.+.++++. .|
T Consensus 160 ~--~-eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~-~~eAe~~L~~al~~--~~ 232 (290)
T PF04733_consen 160 I--D-EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGH-YEEAEELLEEALEK--DP 232 (290)
T ss_dssp C--S-CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT--HHHHHHHHHHHCCC---C
T ss_pred c--C-CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHh--cc
Confidence 3 2 2223333333322 233578888888887665 36677777777777778888 88888888887763 34
Q ss_pred -CHHHHHHHHHHHHccCCH-hHHHHHHHHHHhcCCCC
Q 038622 510 -EFSSFYMLAEGLVSLGKE-ETLVELIDMVMDKAKFS 544 (587)
Q Consensus 510 -~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~ 544 (587)
+++++.+++.+....|+. +.+.+++.++....|..
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 677777888777777777 56667777777777764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.5e-08 Score=89.75 Aligned_cols=223 Identities=9% Similarity=0.019 Sum_probs=128.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCH--HHH
Q 038622 313 LKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSR-RVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDI--KRA 389 (587)
Q Consensus 313 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~A 389 (587)
.+..++|+..+.+++..+ |.+..+|+....++...| ++++++..+++++.... .+..+|+....++.+.|+. +++
T Consensus 50 ~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 50 DERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchhhHHH
Confidence 445556666666665554 444455555555555555 45666666666665432 2334455444444444442 456
Q ss_pred HHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc---CC----HHHHHHH
Q 038622 390 ADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRR---KR----TTEAMRL 462 (587)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~A~~~ 462 (587)
..+++.+++.+.. +..+|.....++...|+++++++.++++++.++. +..+|+..+.++... |. .++++.+
T Consensus 128 l~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 128 LEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 6666666665443 5566666666666667777777777777766544 556666665555443 22 2456666
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-------------
Q 038622 463 FREMMEKADPPDALTYKHVFRGLCNG----GGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLG------------- 525 (587)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g------------- 525 (587)
..+++... |.+...|+.+...+... +. ..+|.+++.++++.+ ..+..++..|+++|....
T Consensus 206 ~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~-~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~ 282 (320)
T PLN02789 206 TIDAILAN-PRNESPWRYLRGLFKDDKEALVS-DPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTL 282 (320)
T ss_pred HHHHHHhC-CCCcCHHHHHHHHHhcCCccccc-chhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhcc
Confidence 66777653 55666676666666552 33 456777777766532 225667777777776532
Q ss_pred -----CHhHHHHHHHHHHhcCC
Q 038622 526 -----KEETLVELIDMVMDKAK 542 (587)
Q Consensus 526 -----~~~~A~~~~~~~~~~~~ 542 (587)
..++|.++++.+.+.+|
T Consensus 283 ~~~~~~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 283 AEELSDSTLAQAVCSELEVADP 304 (320)
T ss_pred ccccccHHHHHHHHHHHHhhCc
Confidence 23567777776643333
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.3e-07 Score=101.44 Aligned_cols=340 Identities=11% Similarity=0.007 Sum_probs=217.5
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC------CCC--HHhHHHHHHH
Q 038622 203 STLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGC------QPD--EFTYNMLIDS 274 (587)
Q Consensus 203 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~ 274 (587)
......|+++.+..++..+.......++.........+...|+++++..++..+...-- .+. ......+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 34455677777666665542111111223334445556678999999999887754310 111 1222334556
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHH
Q 038622 275 LCSRGMLEEALKLLKEMESSGCARNV----VTYNTLIDGFCKLKRIEEAEEIFDEMEIQGI---SR--NSVTYNTLIDGL 345 (587)
Q Consensus 275 ~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~ 345 (587)
+...|++++|...++.........+. .....++..+...|++++|...+.+...... .+ .......+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 67899999999999988763211221 2345567777889999999999988764311 11 123445566778
Q ss_pred HhcCCHHHHHHHHHHHHHc----CCC--C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCC--CcchHHHHHHH
Q 038622 346 CKSRRVEDAAQLMDQMIME----GLK--P-DKFTYNSLLTYYCRAGDIKRAADIVQNMTSN--GCEP--DIVTYGTLIGG 414 (587)
Q Consensus 346 ~~~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~--~~~~~~~l~~~ 414 (587)
...|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+.... ...+ ....+..++..
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 8899999999999887752 211 1 1223445566777889999999999887653 1111 23344556778
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC-ChHhH-----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH----HHHHHHHH
Q 038622 415 LCKAGRVEVASKLLRSIQMKGIVL-TPQAY-----NPVIQALFRRKRTTEAMRLFREMMEKADPPDAL----TYKHVFRG 484 (587)
Q Consensus 415 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~ 484 (587)
+...|+++.|...++.+....... ....+ ......+...|+.+.|...+....... ..... .+..+..+
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~-~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPE-FANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCC-CccchhHHHHHHHHHHH
Confidence 889999999999998886531110 11111 112244456889999999987765422 11111 13456667
Q ss_pred HHhCCCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 485 LCNGGGPIGEAVDFVIEMLER----GFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 485 ~~~~~~~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
+...|+ +++|...++++++. |..+ ...+...++.++...|+.++|...+.++++.....
T Consensus 701 ~~~~g~-~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 701 QILLGQ-FDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHcCC-HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 788898 99999999998853 2122 23466778899999999999999999999877553
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.4e-07 Score=99.29 Aligned_cols=58 Identities=16% Similarity=0.241 Sum_probs=24.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc----CCCCC-hHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038622 411 LIGGLCKAGRVEVASKLLRSIQMK----GIVLT-PQAYNPVIQALFRRKRTTEAMRLFREMME 468 (587)
Q Consensus 411 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (587)
++.++...|+.++|...++++... +.... ..+...++.++...|+.++|...+.++++
T Consensus 697 ~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 697 IARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444445555555554444332 11110 12333344444455555555555555544
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-08 Score=85.71 Aligned_cols=158 Identities=14% Similarity=0.130 Sum_probs=123.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHH
Q 038622 378 TYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTT 457 (587)
Q Consensus 378 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 457 (587)
..|...|+++......+.+.. |.. .+...++.+++...+++..+.++. +...|..++..+...|+++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~~--------~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PLH--------QFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----ccc--------cccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHH
Confidence 457788887776544433221 110 112367778888888888887554 7789999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHH-HhCCCC-HHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHH
Q 038622 458 EAMRLFREMMEKADPPDALTYKHVFRGL-CNGGGP-IGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELI 534 (587)
Q Consensus 458 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~-~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 534 (587)
+|...|+++.+.. |.+...+..++.++ ...|+. .++|.+.++++++. .| ++.++..++..+.+.|++++|+..+
T Consensus 91 ~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 91 NALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALAL--DANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999975 66777888888765 555651 49999999999984 56 7899999999999999999999999
Q ss_pred HHHHhcCCCCCchhhhh
Q 038622 535 DMVMDKAKFSDRETSMV 551 (587)
Q Consensus 535 ~~~~~~~~~~~~~~~~~ 551 (587)
+++++..|..+....++
T Consensus 168 ~~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 168 QKVLDLNSPRVNRTQLV 184 (198)
T ss_pred HHHHhhCCCCccHHHHH
Confidence 99999999877655554
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-09 Score=96.04 Aligned_cols=257 Identities=15% Similarity=0.122 Sum_probs=158.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 038622 238 QGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIE 317 (587)
Q Consensus 238 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 317 (587)
+-+.-.|++..++.-.+ ........+......+.+++...|+++.++ ..+.... +|.......++..+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 34456677777775555 222211122344556677777788766543 3333333 555566666665554444555
Q ss_pred HHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 038622 318 EAEEIFDEMEIQGIS-RNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNM 396 (587)
Q Consensus 318 ~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 396 (587)
.++.-+......... .+.........++...|++++|++++.+. .+.......+.++...++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555443322222 12222333334566778888888877642 35666667788888899999999999888
Q ss_pred HHCCCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038622 397 TSNGCEPDIVTYGTLIGGLCK----AGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADP 472 (587)
Q Consensus 397 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 472 (587)
.+. . +..+...++.++.. .+.+.+|..+|+++.+. ..+++...+.++.+....|++++|.+.+.+++..+ +
T Consensus 158 ~~~--~-eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~ 232 (290)
T PF04733_consen 158 QQI--D-EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-P 232 (290)
T ss_dssp HCC--S-CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--C
T ss_pred Hhc--C-CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-c
Confidence 764 2 33445555555432 33689999999998765 45677888888899999999999999999988765 6
Q ss_pred CCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHH
Q 038622 473 PDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFS 512 (587)
Q Consensus 473 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~ 512 (587)
.++.++..++......|+..+.+.+++.++.. ..|+..
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~--~~p~h~ 270 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ--SNPNHP 270 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH--HTTTSH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH--hCCCCh
Confidence 66777777877777888844677778888776 346433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.6e-07 Score=84.63 Aligned_cols=224 Identities=9% Similarity=0.046 Sum_probs=125.5
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH--HHH
Q 038622 278 RGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLK-RIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRV--EDA 354 (587)
Q Consensus 278 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~A 354 (587)
.+..++|+..+.+++..+ |.+..+|.....++...| ++++++..++++...+ |.+..+|+....++.+.|+. +++
T Consensus 50 ~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 50 DERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHH
Confidence 345556666666666554 344445555555555555 4566666666666554 44555555554444444442 455
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhc---CC----hHHHHHH
Q 038622 355 AQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKA---GR----VEVASKL 427 (587)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~----~~~a~~~ 427 (587)
+.++++++.... -+..+|.....++...|++++++..+.++++.++. +...|+....++... |. .++.+.+
T Consensus 128 l~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 128 LEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 666666665432 24556666666666666677777777766665544 445555555444433 21 2355666
Q ss_pred HHHHHHcCCCCChHhHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC-------------
Q 038622 428 LRSIQMKGIVLTPQAYNPVIQALFRR----KRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGG------------- 490 (587)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------- 490 (587)
..+++...+. +..+|+.+...+... ++..+|.+.+.++.+.+ +.+...+..++..++....
T Consensus 206 ~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~ 283 (320)
T PLN02789 206 TIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLA 283 (320)
T ss_pred HHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhccc
Confidence 6566654333 456677666666652 34456777777766643 4455566666666654321
Q ss_pred ----CHHHHHHHHHHHHHcCCCC
Q 038622 491 ----PIGEAVDFVIEMLERGFLP 509 (587)
Q Consensus 491 ----~~~~A~~~~~~~~~~~~~p 509 (587)
..++|.+++..+.+ .+|
T Consensus 284 ~~~~~~~~a~~~~~~l~~--~d~ 304 (320)
T PLN02789 284 EELSDSTLAQAVCSELEV--ADP 304 (320)
T ss_pred cccccHHHHHHHHHHHHh--hCc
Confidence 13567777777743 455
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.15 E-value=5e-06 Score=76.35 Aligned_cols=429 Identities=11% Similarity=0.110 Sum_probs=221.7
Q ss_pred HhCCCCCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh
Q 038622 12 VSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNV 91 (587)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 91 (587)
++.+ |-|..+|..|++-+-.+ ..+++...++++...- |..+..|...+.......+++....+|.+++.. ..+..
T Consensus 13 ie~n-P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlD 87 (656)
T KOG1914|consen 13 IEEN-PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLD 87 (656)
T ss_pred HhcC-CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHh
Confidence 3444 78999999999887655 8999999999998764 677899999999999999999999999999876 34566
Q ss_pred hHHHHHHHHHh-cCCHHH----HHHHHHHHHH-CCCCC-ChhhHHHHHHHH---------HhcCChHHHHHHHHHHHhCC
Q 038622 92 TVNVLVHGFCK-EGRIED----ALSFIQEMVS-EGFNP-DQFTYNTLVNGL---------CKVGHVKQALEVMDMMLQEG 155 (587)
Q Consensus 92 ~~~~l~~~~~~-~~~~~~----a~~~~~~~~~-~~~~~-~~~~~~~l~~~~---------~~~~~~~~a~~~~~~~~~~~ 155 (587)
.|...+.--.+ .|+... ..+.|+-.+. .|..+ +...|...+..+ ..+.+++..+++|.+++...
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 77665543222 233332 2333443332 33332 233466555433 23446677788888887642
Q ss_pred CCCCcccHHHH------HHH-------HHhcCCHHHHHHHHHHHHhC--CCCCChhhHHHHHHHHhccCCHHHH--HHHH
Q 038622 156 FDPDVFTYNSL------ISG-------LCKLGEVEEAVEILNQMILR--DCSPNTITYNTLISTLCKENQVEEA--TELA 218 (587)
Q Consensus 156 ~~~~~~~~~~l------~~~-------~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a--~~~~ 218 (587)
+.-=...|... ++. --+...+..|.++++++... |...+..+ .-..|-.++. .+++
T Consensus 168 m~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~~qv~~W 240 (656)
T KOG1914|consen 168 MHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEIQQVELW 240 (656)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHHHHHHHH
Confidence 21111122111 111 11223455666666665422 21111111 0011111111 1122
Q ss_pred HHHHh---C-CCC-CCHhhHHHHHHHHHhcCChHHHHHHHHHHH-HcCCCCCHHhHHHHH-------HHHHccC------
Q 038622 219 RVLTS---K-GIL-PDVCTFNSLIQGLCLTSNFDVAMELFQEMK-TKGCQPDEFTYNMLI-------DSLCSRG------ 279 (587)
Q Consensus 219 ~~~~~---~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~-------~~~~~~~------ 279 (587)
....+ . ++. .+...... ...-.+++.+ -.+..| ..|.... ..+...|
T Consensus 241 ~n~I~wEksNpL~t~~~~~~~~------------Rv~yayeQ~ll~l~~~p--eiWy~~s~yl~~~s~l~~~~~d~~~a~ 306 (656)
T KOG1914|consen 241 KNWIKWEKSNPLRTLDGTMLTR------------RVMYAYEQCLLYLGYHP--EIWYDYSMYLIEISDLLTEKGDVPDAK 306 (656)
T ss_pred HHHHHHHhcCCcccccccHHHH------------HHHHHHHHHHHHHhcCH--HHHHHHHHHHHHhhHHHHHhcccccch
Confidence 11111 1 111 00000000 0000111110 011111 1111111 1111111
Q ss_pred -ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038622 280 -MLEEALKLLKEMESSGCARNVVTYNTLIDGFCK---LKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAA 355 (587)
Q Consensus 280 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 355 (587)
..+++..+++.....-...+...+..+...--. .+..+....+++++.......-..+|...+..-.+..-...|.
T Consensus 307 ~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR 386 (656)
T KOG1914|consen 307 SLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAAR 386 (656)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHH
Confidence 134566666665543222233333333322111 1235556666666654432223345666666666666677777
Q ss_pred HHHHHHHHcCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038622 356 QLMDQMIMEGLKP-DKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMK 434 (587)
Q Consensus 356 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 434 (587)
.+|.++.+.+..+ +.....+++..++ .+|..-|.++|+.-.+. ...++......+..+...++-..+..+|+++...
T Consensus 387 ~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 387 KIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 7777777765554 4445555555444 46677777777766554 2223333345566666777777777777777776
Q ss_pred CCCCCh--HhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038622 435 GIVLTP--QAYNPVIQALFRRKRTTEAMRLFREMME 468 (587)
Q Consensus 435 ~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (587)
++.++. .+|..++.--..-|+...++++-++...
T Consensus 465 ~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 465 VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 444332 5777777777777777777776665554
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.9e-06 Score=79.10 Aligned_cols=486 Identities=15% Similarity=0.130 Sum_probs=252.4
Q ss_pred HHcCChhhHHHHHHhhccCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 038622 31 CKAHQIRPAILMMEEMPGYGLAPDER-TFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDA 109 (587)
Q Consensus 31 ~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 109 (587)
...+++.+|........++. ||.. +...=+-.+.+.|+.++|..+++.....+ ..+..+...+-.+|...|+.++|
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNALYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhHH
Confidence 45677888888888887763 4432 22222334568888888887777766554 33667777788888888889999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC-C---------HHHH
Q 038622 110 LSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLG-E---------VEEA 179 (587)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~---------~~~a 179 (587)
..+|+++... .|+......+..+|.+.+.+.+-.+.--++-+. ++-++..+-.++......- . ..-|
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 9999888876 566777777778888888777655554444442 2334444444444443321 1 2335
Q ss_pred HHHHHHHHhCC-CCCChhhHHHHHHHHhccCCHHHHHHHHH-HHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 038622 180 VEILNQMILRD-CSPNTITYNTLISTLCKENQVEEATELAR-VLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMK 257 (587)
Q Consensus 180 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 257 (587)
.+.++.+...+ .-.+..-......++...|++++|.+++. ...+.-..-+...-+.-+..+...++|.+..++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 55566665553 11122223333455566788888888883 33333222233444456667777888888888888887
Q ss_pred HcCCCCCHHhH----HHHHHH---------HHccCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHH
Q 038622 258 TKGCQPDEFTY----NMLIDS---------LCSRGMLEEALKLLKEMESSGCARNVV-TYNTLIDGFCKLKRIEEAEEIF 323 (587)
Q Consensus 258 ~~~~~~~~~~~----~~l~~~---------~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~ 323 (587)
..+ +.|-.+| ..++.. +...+..+...+...+..... ...+. +...+-.-+..-|+.+++...|
T Consensus 254 ~k~-~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~-~Rgp~LA~lel~kr~~~~gd~ee~~~~y 331 (932)
T KOG2053|consen 254 EKG-NDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK-SRGPYLARLELDKRYKLIGDSEEMLSYY 331 (932)
T ss_pred HhC-CcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc-ccCcHHHHHHHHHHhcccCChHHHHHHH
Confidence 775 2231111 111111 111223333344333333321 11111 1111222223457777665544
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh----h---HHHHHHHHHhcC-----CHHHHHH
Q 038622 324 DEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKF----T---YNSLLTYYCRAG-----DIKRAAD 391 (587)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~---~~~l~~~~~~~~-----~~~~A~~ 391 (587)
-+-. | +...+..=+..|...=..+.-..++...... .++.. . +...+......| +-+.-..
T Consensus 332 ~~kf--g---~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a 404 (932)
T KOG2053|consen 332 FKKF--G---DKPCCAIDLNHYLGHLNIDQLKSLMSKLVLA--DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILA 404 (932)
T ss_pred HHHh--C---CCcHhHhhHHHhhccCCHHHHHHHHHHhhcc--CCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHH
Confidence 3321 1 1112222233333333333444444444332 11111 0 111111122222 1222233
Q ss_pred HHHHHH---HCC------CCCCcc---------hHHHHHHHHHhcCCh---HHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 038622 392 IVQNMT---SNG------CEPDIV---------TYGTLIGGLCKAGRV---EVASKLLRSIQMKGIVLTPQAYNPVIQAL 450 (587)
Q Consensus 392 ~~~~~~---~~~------~~~~~~---------~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 450 (587)
++.+.. +.| +-|+.. +.+.|++.+.+.++. -+|+-+++........ +...-..+++.|
T Consensus 405 ~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~h-nf~~KLlLiriY 483 (932)
T KOG2053|consen 405 YVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPH-NFQTKLLLIRIY 483 (932)
T ss_pred HHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCc-cHHHHHHHHHHH
Confidence 332221 112 222221 234455667776654 4455556665554322 445556778888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHH
Q 038622 451 FRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETL 530 (587)
Q Consensus 451 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 530 (587)
.-.|-+..|.++|+.+--+.+..|...+. +...+...|. +..+...+...+.. +..+..-...++..-++.|.|++-
T Consensus 484 ~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~-~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AYr~g~ySkI 560 (932)
T KOG2053|consen 484 SYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGR-SSFASNTFNEHLKF-YDSSLKETPEYIALAYRRGAYSKI 560 (932)
T ss_pred HHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhccc-chhHHHHHHHHHHH-HhhhhhhhHHHHHHHHHcCchhhh
Confidence 88888888888888775554544544442 2333445566 88888888877753 222222222344445567777776
Q ss_pred HHHHH
Q 038622 531 VELID 535 (587)
Q Consensus 531 ~~~~~ 535 (587)
.++..
T Consensus 561 ~em~~ 565 (932)
T KOG2053|consen 561 PEMLA 565 (932)
T ss_pred HHHHH
Confidence 66553
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.4e-09 Score=83.25 Aligned_cols=114 Identities=11% Similarity=0.023 Sum_probs=95.8
Q ss_pred HHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 038622 425 SKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 504 (587)
..++++.++. . +..+...+..+...|++++|...|..++..+ |.+...+..++.++...|+ +++|+..|+++++
T Consensus 13 ~~~~~~al~~--~--p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~-~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLSV--D--PETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKE-YTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHc--C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhh-HHHHHHHHHHHHh
Confidence 3466666663 3 3346677888999999999999999999875 7788888899999999999 9999999999998
Q ss_pred cCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc
Q 038622 505 RGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 505 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
+.| ++.++..++.++...|++++|+..++++++..|.+..
T Consensus 87 --l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~ 127 (144)
T PRK15359 87 --LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADAS 127 (144)
T ss_pred --cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 456 7899999999999999999999999999999998744
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.7e-08 Score=95.36 Aligned_cols=223 Identities=16% Similarity=0.138 Sum_probs=171.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHH
Q 038622 332 SRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTL 411 (587)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 411 (587)
||-...-..+...+...|-...|..++++.. .|...+.+|...|+..+|..+..+-++. +|++..|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 4444455667778888888888888888753 3666778888888888888888887773 5677778777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCC
Q 038622 412 IGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGP 491 (587)
Q Consensus 412 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 491 (587)
++......-+++|.++.+....+ +-..++....+.++++++.+.++...+.. +....+|..++.+..+.++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek- 534 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK- 534 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh-
Confidence 77766666677777776654432 33334444555789999999999988864 6677788888888888888
Q ss_pred HHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHHHHHHHHHhcch
Q 038622 492 IGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFLKIRKFQDALATFGD 569 (587)
Q Consensus 492 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~ 569 (587)
+..|.+.|.+.+. ..| +...|.++..+|.+.|+..+|...++++++.+..+ ..|.....+....|.+++|++.+++
T Consensus 535 ~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 535 EQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 9999999999987 567 68889999999999999999999999999988665 3476677778889999999999998
Q ss_pred hhhccCc
Q 038622 570 ILDSRMP 576 (587)
Q Consensus 570 ~~~~~~~ 576 (587)
+.+....
T Consensus 613 ll~~~~~ 619 (777)
T KOG1128|consen 613 LLDLRKK 619 (777)
T ss_pred HHHhhhh
Confidence 8876643
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.8e-09 Score=92.87 Aligned_cols=185 Identities=14% Similarity=0.048 Sum_probs=113.5
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh---HhH
Q 038622 369 DKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCE-P-DIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTP---QAY 443 (587)
Q Consensus 369 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~ 443 (587)
....+..++..+...|+++.|...+++++...+. | ....+..++.++...|++++|...++++.+..+. +. .++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN-HPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCchHHHH
Confidence 4456667777788888888888888887774321 1 1135667778888888888888888888775332 22 245
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 038622 444 NPVIQALFRR--------KRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFY 515 (587)
Q Consensus 444 ~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~ 515 (587)
..++.++... |++++|.+.++++++.. |.+...+..+.... . ... .. .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~-~----~~~-------~~-------~~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMD-Y----LRN-------RL-------AGKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHH-H----HHH-------HH-------HHHHH
Confidence 6666666654 67778888888887752 33322222111100 0 000 00 01123
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHhcCCCC----CchhhhhhhHHHHHHHHHHHHhcchhhhcc
Q 038622 516 MLAEGLVSLGKEETLVELIDMVMDKAKFS----DRETSMVRGFLKIRKFQDALATFGDILDSR 574 (587)
Q Consensus 516 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 574 (587)
.++..|.+.|++++|+..++++++..|.. +.+..++.++.+.|++++|...++.+....
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 45666777777777777777777776643 246677777777777777777776665544
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.4e-09 Score=88.08 Aligned_cols=152 Identities=11% Similarity=0.120 Sum_probs=124.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCC
Q 038622 412 IGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGP 491 (587)
Q Consensus 412 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 491 (587)
+-.|...|+++.+....+.+.. |.. .+...++.++++..+++.++.+ |.+...|..++..+...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~~--------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~- 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PLH--------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRND- 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----ccc--------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCC-
Confidence 3467788998887555433322 110 1223677899999999999875 8889999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH-HccCC--HhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHHHHHHHHHh
Q 038622 492 IGEAVDFVIEMLERGFLP-EFSSFYMLAEGL-VSLGK--EETLVELIDMVMDKAKFS-DRETSMVRGFLKIRKFQDALAT 566 (587)
Q Consensus 492 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~ 566 (587)
+++|...|+++++ +.| ++..+..++.++ ...|+ .++|.++++++++.+|.+ ..+..++..+.+.|++++|+..
T Consensus 89 ~~~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 89 YDNALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999998 456 799999999975 67787 599999999999999987 5688999999999999999999
Q ss_pred cchhhhccCchhh
Q 038622 567 FGDILDSRMPRKT 579 (587)
Q Consensus 567 ~~~~~~~~~~~~~ 579 (587)
|+++++..++.++
T Consensus 167 ~~~aL~l~~~~~~ 179 (198)
T PRK10370 167 WQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHhhCCCCcc
Confidence 9999998877553
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.3e-07 Score=77.71 Aligned_cols=188 Identities=16% Similarity=0.153 Sum_probs=117.4
Q ss_pred cCCHHHHHHHHHHHHHc---C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHH
Q 038622 313 LKRIEEAEEIFDEMEIQ---G-ISRNSV-TYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIK 387 (587)
Q Consensus 313 ~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 387 (587)
..+.++..+++..+... + ..++.. .+..++-+....|+.+.|...++++... ++.+..+...-+-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchh
Confidence 45677777777766432 1 222322 3444555566677777777777777665 2223333333333455667777
Q ss_pred HHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038622 388 RAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMM 467 (587)
Q Consensus 388 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 467 (587)
+|.++|+.+++.++. |..++-.-+-+.-..|+.-+|++-+....+. +..|.++|..+...|...|++++|.-++++++
T Consensus 104 ~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 777777777776533 4445555555556667777777777777665 44477777777777777777777777777777
Q ss_pred hcCCCCCHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH
Q 038622 468 EKADPPDALTYKHVFRGLCNGGG--PIGEAVDFVIEMLE 504 (587)
Q Consensus 468 ~~~~~~~~~~~~~l~~~~~~~~~--~~~~A~~~~~~~~~ 504 (587)
-.. |-++..+..++..++-.|+ +.+-|.++|.++++
T Consensus 182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 653 5555666666666555553 25567777777776
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.5e-08 Score=84.01 Aligned_cols=158 Identities=18% Similarity=0.090 Sum_probs=94.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc
Q 038622 374 NSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRR 453 (587)
Q Consensus 374 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 453 (587)
..+...+...|+-+....+........ ..+......++....+.|++..|...++++....+ ++...|+.++-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHHHHHHc
Confidence 445555556666666655555543321 11333444466666666777777777666666432 2556666666677777
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 038622 454 KRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVEL 533 (587)
Q Consensus 454 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 533 (587)
|++++|...|.++++.. +.++...++++..+.-.|+ ++.|..++..+...+ .-+..+..+|+.+....|++++|..+
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd-~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGD-LEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCC-HHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhh
Confidence 77777777777666652 4455556666666666666 667776666666521 11566666666666667776666665
Q ss_pred HHH
Q 038622 534 IDM 536 (587)
Q Consensus 534 ~~~ 536 (587)
...
T Consensus 225 ~~~ 227 (257)
T COG5010 225 AVQ 227 (257)
T ss_pred ccc
Confidence 544
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.1e-08 Score=87.16 Aligned_cols=189 Identities=11% Similarity=-0.023 Sum_probs=136.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc--
Q 038622 332 SRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDK---FTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIV-- 406 (587)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-- 406 (587)
+.....+...+..+...|+++.|...+++++.... .+. ..+..++.++...|++++|...++++++..+. +..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYP-FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN-HPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCchH
Confidence 44567788888999999999999999999988532 122 46677889999999999999999999986432 222
Q ss_pred -hHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH
Q 038622 407 -TYGTLIGGLCKA--------GRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALT 477 (587)
Q Consensus 407 -~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 477 (587)
.+..++.++... |+.++|.+.++++....+. +...+..+..... ... ... ..
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~-------~~~-------~~ 168 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN-------RLA-------GK 168 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH-------HHH-------HH
Confidence 466677777765 7899999999999986433 2223222221111 000 000 11
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-CC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCC
Q 038622 478 YKHVFRGLCNGGGPIGEAVDFVIEMLERGF-LP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAK 542 (587)
Q Consensus 478 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 542 (587)
...++..+...|+ +++|+..++++++..- .| .+.++..++.++.+.|++++|...++.+....|
T Consensus 169 ~~~~a~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGA-YVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCC-hHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 2245666888999 9999999999997421 23 367899999999999999999999999877665
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.2e-08 Score=94.64 Aligned_cols=237 Identities=17% Similarity=0.127 Sum_probs=183.5
Q ss_pred CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038622 261 CQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNT 340 (587)
Q Consensus 261 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 340 (587)
.+|-...-..++..+...|-...|..++++.. .|...+.+|...|+..+|..+..+..+. +|++..|..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~ 462 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL 462 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence 34555556677888899999999999998765 4677888999999999999998888773 788888988
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC
Q 038622 341 LIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGR 420 (587)
Q Consensus 341 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 420 (587)
++.......-+++|.++.+..... .-..+.......+++.++.+.|+...+.++- ...+|..++.+..+.++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhh
Confidence 888877777788888887765432 2222333344578999999999988875332 56788899999999999
Q ss_pred hHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 038622 421 VEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVI 500 (587)
Q Consensus 421 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~ 500 (587)
++.|.+.|.......+. +...|+++..+|.+.|+-.+|...++++++.+ ..+...|.+........|. +++|++.+.
T Consensus 535 ~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge-~eda~~A~~ 611 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGE-FEDAIKAYH 611 (777)
T ss_pred hHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhccc-HHHHHHHHH
Confidence 99999999999885332 45899999999999999999999999999986 5566677777777788999 999999999
Q ss_pred HHHHcCCCC-CHHHHHHHHH
Q 038622 501 EMLERGFLP-EFSSFYMLAE 519 (587)
Q Consensus 501 ~~~~~~~~p-~~~~~~~l~~ 519 (587)
++++..... |+.+...+..
T Consensus 612 rll~~~~~~~d~~vl~~iv~ 631 (777)
T KOG1128|consen 612 RLLDLRKKYKDDEVLLIIVR 631 (777)
T ss_pred HHHHhhhhcccchhhHHHHH
Confidence 988532221 4444444433
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.3e-08 Score=79.69 Aligned_cols=165 Identities=17% Similarity=0.162 Sum_probs=115.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 038622 52 APDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTL 131 (587)
Q Consensus 52 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 131 (587)
|.|..+ ......+...|+-+....+........ +.+......++....+.|++..|...++++.... ++|...|+.+
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~l 140 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLL 140 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHH
Confidence 334455 666667777777777777766655432 4455566667777777888888888887777654 6677778888
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCH
Q 038622 132 VNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQV 211 (587)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 211 (587)
.-+|.+.|+++.|..-|.+..+.. +-++...+.++..+.-.|+++.|..++....... +.+..+...+.......|++
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCCh
Confidence 888888888888888777777752 2246667777777777788888888777776664 33666677777777777777
Q ss_pred HHHHHHHHHH
Q 038622 212 EEATELARVL 221 (587)
Q Consensus 212 ~~a~~~~~~~ 221 (587)
+.|.++...-
T Consensus 219 ~~A~~i~~~e 228 (257)
T COG5010 219 REAEDIAVQE 228 (257)
T ss_pred HHHHhhcccc
Confidence 7777765543
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-07 Score=78.06 Aligned_cols=206 Identities=15% Similarity=0.087 Sum_probs=159.2
Q ss_pred hcCCHHHHHHHHHHHHHc---C-CCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCh
Q 038622 347 KSRRVEDAAQLMDQMIME---G-LKPDKF-TYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRV 421 (587)
Q Consensus 347 ~~~~~~~A~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 421 (587)
...+.++..+++..+... | ..++.. .+..++-+....|+.+-|...++.+...- +.+......-+..+...|.+
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 357889999999988753 3 444544 45566677788899999999999988763 33445554455667788999
Q ss_pred HHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 038622 422 EVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIE 501 (587)
Q Consensus 422 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~ 501 (587)
++|+++++.+++.++. +..++..-+......|+.-+|++.+.+.++. ++.|...|..+...|...|+ +++|.-.+++
T Consensus 103 ~~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~-f~kA~fClEE 179 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGD-FEKAAFCLEE 179 (289)
T ss_pred hhHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhH-HHHHHHHHHH
Confidence 9999999999997633 4566666667777889989999999999987 68899999999999999999 9999999999
Q ss_pred HHHcCCCC-CHHHHHHHHHHHHccC---CHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHH
Q 038622 502 MLERGFLP-EFSSFYMLAEGLVSLG---KEETLVELIDMVMDKAKFS-DRETSMVRGFLKIR 558 (587)
Q Consensus 502 ~~~~~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 558 (587)
++= +.| ++-.+..++.+++-.| +..-|+++|.++++.+|.+ -.++.+-.+....-
T Consensus 180 ~ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la 239 (289)
T KOG3060|consen 180 LLL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALA 239 (289)
T ss_pred HHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHH
Confidence 986 467 7888889999887655 5778999999999999944 22444444333333
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.3e-10 Score=69.22 Aligned_cols=50 Identities=40% Similarity=0.736 Sum_probs=45.6
Q ss_pred CCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHh
Q 038622 18 PDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIE 67 (587)
Q Consensus 18 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 67 (587)
||..+|+.++++|++.|++++|.++|++|.+.|++||..+|+.++.++++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999988763
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.5e-07 Score=91.12 Aligned_cols=135 Identities=11% Similarity=0.019 Sum_probs=83.4
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038622 404 DIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFR 483 (587)
Q Consensus 404 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 483 (587)
+...+..|+.+....|..++|..+++.+.+..+. +..++..++..+.+.+++++|+..++++++.+ |.+......++.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHH
Confidence 4556666666666666666666666666664222 33555666666666666666666666666653 445555555666
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCC
Q 038622 484 GLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKF 543 (587)
Q Consensus 484 ~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 543 (587)
++.+.|+ +++|...|++++.. .| +..++..++.++...|+.++|...|+++++....
T Consensus 163 ~l~~~g~-~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 163 SWDEIGQ-SEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred HHHHhcc-hHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 6666666 66666666666652 34 4566666666666666666666666666655543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.6e-08 Score=78.06 Aligned_cols=123 Identities=14% Similarity=0.008 Sum_probs=86.9
Q ss_pred HHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038622 391 DIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKA 470 (587)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 470 (587)
.++++.++. .|+ .+..++..+...|++++|...|+.+....+. +...|..++.++...|++++|+..|++++..+
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 345555553 233 3555677777888888888888887775433 56777888888888888888888888888764
Q ss_pred CCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 038622 471 DPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLV 522 (587)
Q Consensus 471 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 522 (587)
|.+...+..++.++...|+ +++|+..+.++++ ..| ++..+...+.+..
T Consensus 89 -p~~~~a~~~lg~~l~~~g~-~~eAi~~~~~Al~--~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 89 -ASHPEPVYQTGVCLKMMGE-PGLAREAFQTAIK--MSYADASWSEIRQNAQI 137 (144)
T ss_pred -CCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHH--hCCCChHHHHHHHHHHH
Confidence 6677777777777788888 8888888888887 345 5666665555543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.9e-07 Score=93.31 Aligned_cols=209 Identities=13% Similarity=0.024 Sum_probs=109.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 038622 52 APDERTFTTLMQGLIEEGNLDGALRIREQMVEHG-CL---VTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFT 127 (587)
Q Consensus 52 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 127 (587)
|.+...|...|......++.+.|++++++++..= +. ....+|.++++.-...|.-+...++|+++.+.- .....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence 3344455566655556666666666666555431 11 111245555555555555555556666655531 11334
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHh
Q 038622 128 YNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCS-PNTITYNTLISTLC 206 (587)
Q Consensus 128 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 206 (587)
|..|...|.+.+.+++|.++++.|.+. +.-....|..++..+.+.++-+.|..++.+++..-.. .........+..-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 555566666666666666666666554 2234455555566666666666666666555544111 12333444445555
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 038622 207 KENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPD 264 (587)
Q Consensus 207 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 264 (587)
+.|+.+.+..+|+..+... +.....|+..+..-.+.|+.+.+..+|++++..+..|.
T Consensus 1612 k~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred hcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 5666666666666555542 22455566666666666666666666666665554443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.7e-07 Score=94.17 Aligned_cols=169 Identities=12% Similarity=0.171 Sum_probs=106.0
Q ss_pred CHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038622 264 DEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLID 343 (587)
Q Consensus 264 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 343 (587)
+...+..++..+...+++++|.++.+...+.. |.....+..++..+.+.++..++..+ .++.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-----------------NLID 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-----------------hhhh
Confidence 46677778888878888888888888766653 44455555555566666665544433 2233
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHH
Q 038622 344 GLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEV 423 (587)
Q Consensus 344 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 423 (587)
......++.....++..+... ..+...+..++.+|-+.|+.++|..+|+++++.++. ++.+.+.++..|... ++++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHH
Confidence 333344453333334444442 224446777778888888888888888888877643 677778888888777 8888
Q ss_pred HHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038622 424 ASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEK 469 (587)
Q Consensus 424 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (587)
|.+++.++... +...+++.++.+++.++...
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 88887777663 33334555555555555543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.2e-05 Score=71.26 Aligned_cols=188 Identities=14% Similarity=0.125 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC---CHHHHHHHHHHHHHC-CCCCCcchHHHHHHHHHhcCChHHHHH
Q 038622 351 VEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAG---DIKRAADIVQNMTSN-GCEPDIVTYGTLIGGLCKAGRVEVASK 426 (587)
Q Consensus 351 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 426 (587)
.+++..++++.+..-...+..+|..+...--..- ..+.....++++... ...| .-+|..++....+..-+..|..
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHH
Confidence 4567777777765322223334443333221111 255566677766654 2333 3467777888888888999999
Q ss_pred HHHHHHHcCCCCC-hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 038622 427 LLRSIQMKGIVLT-PQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLER 505 (587)
Q Consensus 427 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 505 (587)
+|.++.+.+..+. ......++. |.-.++..-|.++|+--+++ .+.++......+..+...++ -..|..+|++++..
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mE-y~cskD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNd-d~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALME-YYCSKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLND-DNNARALFERVLTS 464 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHH-HHhcCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCc-chhHHHHHHHHHhc
Confidence 9999998866652 234444444 44567999999999988876 35555555667777788888 78999999999987
Q ss_pred CCCC--CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCC
Q 038622 506 GFLP--EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAK 542 (587)
Q Consensus 506 ~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 542 (587)
+++| ....|..++..-..-|+...++++-++....-|
T Consensus 465 ~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 465 VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 6666 467889999888899999999999888776665
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.7e-06 Score=70.80 Aligned_cols=106 Identities=18% Similarity=0.156 Sum_probs=47.5
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 038622 380 YCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCK----AGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKR 455 (587)
Q Consensus 380 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 455 (587)
+.+..+.+-|.+.++.|... . +..+...|+.++.+ .+....|.-+|+++.++ ..|++.+.+..+.++...|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~i--d-ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQI--D-EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHcc--c-hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 33444445555555555442 1 23334444444432 22344455555554443 23344444444444555555
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Q 038622 456 TTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGG 490 (587)
Q Consensus 456 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 490 (587)
+++|..+++.++.++ +.++.++.+++-.....|.
T Consensus 223 ~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 223 YEEAESLLEEALDKD-AKDPETLANLIVLALHLGK 256 (299)
T ss_pred HHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCC
Confidence 555555555555443 3344444444444444444
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.4e-07 Score=90.55 Aligned_cols=244 Identities=13% Similarity=0.031 Sum_probs=178.2
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----hhhHHHHHHHHHhcCChHHHHHHHHH
Q 038622 76 RIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPD-----QFTYNTLVNGLCKVGHVKQALEVMDM 150 (587)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~ 150 (587)
+-|++.+..+ |.+...|...+......++.++|+++.++++.. +.+. ...|.++++.-...|.-+...++|++
T Consensus 1445 eDferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1445 EDFERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred HHHHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 3344454443 677788888888889999999999999988764 2221 23677888877778888888999999
Q ss_pred HHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-CC
Q 038622 151 MLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGIL-PD 229 (587)
Q Consensus 151 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~ 229 (587)
+.+. -..-..|..|...|.+.+.+++|.++|+.|.+.- ......|..++..+.++++-+.|..++.+.++.-+. -.
T Consensus 1523 Acqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070|consen 1523 ACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred HHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh
Confidence 8874 2124567778888999999999999999998773 356778888999999999889999999888875211 02
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH--HHHHHHH
Q 038622 230 VCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNV--VTYNTLI 307 (587)
Q Consensus 230 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~ 307 (587)
.......+..-.+.|+.+.+..+|+..+... |-....|..++..-.+.|+.+.++.+|+++...+.++-. ..|...+
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwL 1678 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWL 1678 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHH
Confidence 3334444555668899999999999888763 556788999999999999999999999999887755543 3455555
Q ss_pred HHHHccCCHHHHHHHHHH
Q 038622 308 DGFCKLKRIEEAEEIFDE 325 (587)
Q Consensus 308 ~~~~~~~~~~~a~~~~~~ 325 (587)
..--+.|+-..+..+=.+
T Consensus 1679 eyEk~~Gde~~vE~VKar 1696 (1710)
T KOG1070|consen 1679 EYEKSHGDEKNVEYVKAR 1696 (1710)
T ss_pred HHHHhcCchhhHHHHHHH
Confidence 555555665544444333
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.7e-07 Score=93.36 Aligned_cols=135 Identities=13% Similarity=0.108 Sum_probs=121.1
Q ss_pred CCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHH
Q 038622 436 IVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSF 514 (587)
Q Consensus 436 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~ 514 (587)
...+..++..|+....+.|.+++|..+++.+.+.. |.+......++..+.+.++ +++|...+++++.. .| +....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~-~eeA~~~~~~~l~~--~p~~~~~~ 157 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQG-IEAGRAEIELYFSG--GSSSAREI 157 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhcc-HHHHHHHHHHHhhc--CCCCHHHH
Confidence 34468899999999999999999999999999973 5566677888999999999 99999999999984 56 78899
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHHHHHHHHHhcchhhhcc
Q 038622 515 YMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFLKIRKFQDALATFGDILDSR 574 (587)
Q Consensus 515 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 574 (587)
..++.++.+.|++++|..+|++++..+|+. +.+..++..+-..|+.++|...|.++++..
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 999999999999999999999999988765 568999999999999999999999998765
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.5e-09 Score=66.12 Aligned_cols=49 Identities=51% Similarity=1.009 Sum_probs=26.4
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 038622 123 PDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLC 171 (587)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 171 (587)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4455555555555555555555555555555555555555555555543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.6e-08 Score=76.21 Aligned_cols=116 Identities=16% Similarity=0.175 Sum_probs=93.6
Q ss_pred HHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 038622 427 LLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERG 506 (587)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 506 (587)
.++++....+. +......++..+...|++++|.+.++.+...+ +.+...+..++..+...|+ +++|...++++++.+
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKE-YEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcC
Confidence 45566654322 34667788888889999999999999998865 6677788888888888888 999999999988743
Q ss_pred CCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc
Q 038622 507 FLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 507 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
+.++..+..++.++...|++++|...++++++..|.+..
T Consensus 82 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 82 -PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 337888889999999999999999999999999987644
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.3e-06 Score=88.05 Aligned_cols=234 Identities=12% Similarity=0.098 Sum_probs=100.6
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 038622 53 PDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLV 132 (587)
Q Consensus 53 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 132 (587)
.+...+..++..+...|++++|.++.+...+.. |.....|..++..+.+.++++++..+ .+...
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~------------- 92 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NLIDS------------- 92 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hhhhh-------------
Confidence 345555566666666666666666666555543 33444444444455555554443333 22111
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHH
Q 038622 133 NGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVE 212 (587)
Q Consensus 133 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 212 (587)
.....++.-..-+...+... ..+..++..++.+|-+.|+.++|..+|++++..+ +.++.+.+.++..+... +++
T Consensus 93 --~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 93 --FSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred --cccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 11111121111111122221 1122244444455555555555555555555444 33444455555554444 555
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHH-----HhcCChHHHHHHHHHHHHc-CCCCCHHhHHHHHHHHHccCChHHHHH
Q 038622 213 EATELARVLTSKGILPDVCTFNSLIQGL-----CLTSNFDVAMELFQEMKTK-GCQPDEFTYNMLIDSLCSRGMLEEALK 286 (587)
Q Consensus 213 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 286 (587)
+|.+++.+....-+ +..-|..+...+ ....+.+.-..+.+.+... +..--..++..+-..|...+++++++.
T Consensus 167 KA~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~ 244 (906)
T PRK14720 167 KAITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIY 244 (906)
T ss_pred HHHHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHH
Confidence 55554444433200 000000000000 0011122222222222221 111123344445556666777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHH
Q 038622 287 LLKEMESSGCARNVVTYNTLIDGFC 311 (587)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~l~~~~~ 311 (587)
+++.+++.. +.+..+...++.+|.
T Consensus 245 iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 245 ILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHhcC-CcchhhHHHHHHHHH
Confidence 777777765 445555666666665
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.2e-06 Score=68.72 Aligned_cols=255 Identities=15% Similarity=0.130 Sum_probs=168.3
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 038622 273 DSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVE 352 (587)
Q Consensus 273 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 352 (587)
+-+.-.|++..++..-...... +.+...-..+.++|...|.+..... .+.... .+....+..+......-++.+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhH
Confidence 3444456677666655444332 1333444455667777776554332 222221 333344444444333344433
Q ss_pred HHH-HHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 038622 353 DAA-QLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSI 431 (587)
Q Consensus 353 ~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 431 (587)
.-+ ++.+.+.......+......-+..|...|++++|.+...... +.+....=...+.+..+++-|.+.+++|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 334444443333333444444567889999999999887622 3334444456677888999999999999
Q ss_pred HHcCCCCChHhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 038622 432 QMKGIVLTPQAYNPVIQALFR----RKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGF 507 (587)
Q Consensus 432 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~ 507 (587)
.+. . +..+...|+.++.+ .+...+|.-+|+++.++ .+|+..+.+..+.++...|+ +++|..+++.++.+.
T Consensus 164 q~i--d-ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~-~eeAe~lL~eaL~kd- 237 (299)
T KOG3081|consen 164 QQI--D-EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR-YEEAESLLEEALDKD- 237 (299)
T ss_pred Hcc--c-hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC-HHHHHHHHHHHHhcc-
Confidence 983 3 55667767766654 45799999999999987 48999999999989999999 999999999999853
Q ss_pred CCCHHHHHHHHHHHHccCCHhHHH-HHHHHHHhcCCCCC
Q 038622 508 LPEFSSFYMLAEGLVSLGKEETLV-ELIDMVMDKAKFSD 545 (587)
Q Consensus 508 ~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~ 545 (587)
..+++++.++..+-...|+..++. +.+.++....|..+
T Consensus 238 ~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 238 AKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 448999999999888889876654 55666666667654
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.1e-06 Score=77.72 Aligned_cols=292 Identities=14% Similarity=0.052 Sum_probs=178.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 038622 233 FNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCK 312 (587)
Q Consensus 233 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 312 (587)
.......+.+..++.+|+..+..+++.. +.+..-|..-+..+...|+++++.--.+...+.. +-.........+++..
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a 129 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLA 129 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhh
Confidence 3344455666666777777777776664 3445555555666666666666665555544432 1122233334444444
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHhhHHHH-HHHHHhcCCHHHHH
Q 038622 313 LKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGL-KPDKFTYNSL-LTYYCRAGDIKRAA 390 (587)
Q Consensus 313 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l-~~~~~~~~~~~~A~ 390 (587)
.++..+|.+.++.- ..+ ....++..++....... +|.-.++..+ ..++...|++++|.
T Consensus 130 ~~~~i~A~~~~~~~---------~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~ 189 (486)
T KOG0550|consen 130 LSDLIEAEEKLKSK---------QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQ 189 (486)
T ss_pred hHHHHHHHHHhhhh---------hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHH
Confidence 44544444444310 000 11223333333332211 1333344433 35567788888888
Q ss_pred HHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChH-------------hHHHHHHHHHhcCCHH
Q 038622 391 DIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQ-------------AYNPVIQALFRRKRTT 457 (587)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------------~~~~l~~~~~~~g~~~ 457 (587)
..--...+.+.. +......-+.++...++.+.+...|++.+..+ |+.. .|..-+.-.++.|++.
T Consensus 190 ~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~ 266 (486)
T KOG0550|consen 190 SEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYR 266 (486)
T ss_pred HHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchh
Confidence 888777775332 34444344455566788888888888888743 3321 2333455567889999
Q ss_pred HHHHHHHHHHhcC---CCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHH
Q 038622 458 EAMRLFREMMEKA---DPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVEL 533 (587)
Q Consensus 458 ~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 533 (587)
+|.+.|.+++..+ ..++...|.....+..+.|+ .++|+.--+.+++ ++| -..++..-+.++.-.+++++|.+.
T Consensus 267 ~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgr-l~eaisdc~~Al~--iD~syikall~ra~c~l~le~~e~AV~d 343 (486)
T KOG0550|consen 267 KAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGR-LREAISDCNEALK--IDSSYIKALLRRANCHLALEKWEEAVED 343 (486)
T ss_pred HHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCC-chhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999853 23455566667777788898 9999999999887 556 367778888899999999999999
Q ss_pred HHHHHhcCCCCCchhhhhh
Q 038622 534 IDMVMDKAKFSDRETSMVR 552 (587)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~ 552 (587)
++++.+.....+....+..
T Consensus 344 ~~~a~q~~~s~e~r~~l~~ 362 (486)
T KOG0550|consen 344 YEKAMQLEKDCEIRRTLRE 362 (486)
T ss_pred HHHHHhhccccchHHHHHH
Confidence 9999887766544444443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.6e-07 Score=71.70 Aligned_cols=97 Identities=11% Similarity=0.042 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038622 21 STFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGF 100 (587)
Q Consensus 21 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (587)
.....+...+.+.|++++|...|+.+...+ +.++..+..++..+...|++++|...++++...+ +.+...+..++.++
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 334444444555555555555555554443 3444555555555555555555555555554443 33444444455555
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 038622 101 CKEGRIEDALSFIQEMVSE 119 (587)
Q Consensus 101 ~~~~~~~~a~~~~~~~~~~ 119 (587)
...|++++|...|+..++.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 5555555555555555443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.72 E-value=0.00038 Score=68.55 Aligned_cols=217 Identities=17% Similarity=0.180 Sum_probs=147.4
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHH--HHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 038622 3 LVETAHADMVSRGIKPDVSTFNILIKA--LCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQ 80 (587)
Q Consensus 3 ~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 80 (587)
.|.+..+.+.+. .||. .|..++.+ +.+.|+.++|..+++.....+ ..|..+...+-..|.+.|+.++|..+|++
T Consensus 27 kal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~ 102 (932)
T KOG2053|consen 27 KALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDEAVHLYER 102 (932)
T ss_pred HHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 455666666665 3553 33344444 578999999999998887665 44888888888999999999999999999
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-C---------hHHHHHHHHH
Q 038622 81 MVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVG-H---------VKQALEVMDM 150 (587)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~---------~~~a~~~~~~ 150 (587)
+.... |+......+..+|.+.+++.+-.+.--++-+. .+.....+-.++..+.+.- . ..-|...++.
T Consensus 103 ~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~ 179 (932)
T KOG2053|consen 103 ANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQK 179 (932)
T ss_pred HHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHH
Confidence 99874 34777888889999998887665554444443 3555666666666555431 1 2235555666
Q ss_pred HHhCC-CCCCcccHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCC
Q 038622 151 MLQEG-FDPDVFTYNSLISGLCKLGEVEEAVEIL-NQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGI 226 (587)
Q Consensus 151 ~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 226 (587)
+.+.+ .-.+..-.......+...|++++|..++ ....+.-.+.+...-+.-+..+...+++.+..++..++...+.
T Consensus 180 ~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 180 LLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 66543 1112222333445566789999999999 4444443333444445567778888999999999999888753
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.2e-07 Score=78.87 Aligned_cols=97 Identities=21% Similarity=0.219 Sum_probs=86.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccC
Q 038622 447 IQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLG 525 (587)
Q Consensus 447 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 525 (587)
+.-+...++|++|+..|.++++.. |.|...|-.-..+|.+.|. ++.|++-.+.++. ++| -..+|..|+.+|...|
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~-~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGE-YEDAVKDCESALS--IDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcc-hHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccC
Confidence 445667889999999999999975 7788888888999999999 9999999999998 667 5889999999999999
Q ss_pred CHhHHHHHHHHHHhcCCCCCch
Q 038622 526 KEETLVELIDMVMDKAKFSDRE 547 (587)
Q Consensus 526 ~~~~A~~~~~~~~~~~~~~~~~ 547 (587)
++++|++.|+++++.+|.++.+
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~ 185 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESY 185 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHH
Confidence 9999999999999999998753
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.5e-07 Score=70.15 Aligned_cols=103 Identities=12% Similarity=-0.054 Sum_probs=86.1
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 038622 440 PQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLA 518 (587)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 518 (587)
.+....++..+...|++++|.++|+-+...+ |-+...|..++.++...|+ +++|+..|.++... .| ++..+.+++
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~-~~~AI~aY~~A~~L--~~ddp~~~~~ag 110 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKH-WGEAIYAYGRAAQI--KIDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhc--CCCCchHHHHHH
Confidence 3566778888889999999999999988865 6677778888888888888 99999999999984 46 788999999
Q ss_pred HHHHccCCHhHHHHHHHHHHhcCCCCCc
Q 038622 519 EGLVSLGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 519 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
.++...|+.+.|++.|+.++.....++.
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~~~~~~~ 138 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRICGEVSE 138 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhccChh
Confidence 9999999999999999999887754433
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.9e-07 Score=72.65 Aligned_cols=126 Identities=15% Similarity=0.129 Sum_probs=72.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--HHHHHHH
Q 038622 407 TYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLT---PQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPD--ALTYKHV 481 (587)
Q Consensus 407 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l 481 (587)
.|..+...+ ..++...+...++.+....+. + ......++..+...|++++|...|+.++.....|. ......+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~-s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPS-SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444443 366677776667666665322 2 23344456666677777777777777776531111 1233445
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHH
Q 038622 482 FRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMV 537 (587)
Q Consensus 482 ~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 537 (587)
...+...|+ +++|+..++.... -...+.....+|++|...|++++|+..|+++
T Consensus 92 A~~~~~~~~-~d~Al~~L~~~~~--~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQ-YDEALATLQQIPD--EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCC-HHHHHHHHHhccC--cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 566666666 7777777655321 1124555566777777777777777777664
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.8e-07 Score=69.17 Aligned_cols=94 Identities=7% Similarity=-0.036 Sum_probs=50.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 038622 408 YGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCN 487 (587)
Q Consensus 408 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (587)
...++..+...|++++|.++|+.+...++. +..-|..|+.++-..|++++|+..|..+...+ +.++..+...+.++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 334444445555555555555555553322 33455555555555555555555555555543 4445555555555555
Q ss_pred CCCCHHHHHHHHHHHHH
Q 038622 488 GGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 488 ~~~~~~~A~~~~~~~~~ 504 (587)
.|+ .+.|++.|+.++.
T Consensus 116 lG~-~~~A~~aF~~Ai~ 131 (157)
T PRK15363 116 CDN-VCYAIKALKAVVR 131 (157)
T ss_pred cCC-HHHHHHHHHHHHH
Confidence 555 5555555555554
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.5e-06 Score=79.90 Aligned_cols=126 Identities=22% Similarity=0.291 Sum_probs=103.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 038622 408 YGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCN 487 (587)
Q Consensus 408 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (587)
...++..+...++++.|..+++++.+.. ++....++..+...++-.+|++++.+++... |.+...+...+..+..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~----pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD----PEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC----CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3455666667889999999999998853 3355668888888899999999999999763 6677777777777888
Q ss_pred CCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcC
Q 038622 488 GGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKA 541 (587)
Q Consensus 488 ~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 541 (587)
.++ ++.|+.+.+++++ +.| +...|..|+.+|.+.|++++|+..++.++-..
T Consensus 247 k~~-~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 247 KKK-YELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred cCC-HHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 888 9999999999998 567 78899999999999999999999998877543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.8e-05 Score=72.10 Aligned_cols=123 Identities=15% Similarity=0.101 Sum_probs=65.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 038622 128 YNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCK 207 (587)
Q Consensus 128 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (587)
+......+...|++++|+..++.+... .+-|+.........+...++.++|.+.+++++... |........++.++.+
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~ 386 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHh
Confidence 333344444555666666666655554 12234444444555556666666666666665553 2234445555566666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHH
Q 038622 208 ENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELF 253 (587)
Q Consensus 208 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 253 (587)
.|++.+|+.++....... +.++..|..+..+|...|+..++....
T Consensus 387 ~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 387 GGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred cCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHH
Confidence 666666666555555442 335555666666666666555554433
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.9e-05 Score=70.08 Aligned_cols=147 Identities=18% Similarity=0.157 Sum_probs=103.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 038622 375 SLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRK 454 (587)
Q Consensus 375 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 454 (587)
.....+...|+++.|...++.++...+ .|+......+..+...++.++|.+.+++++...+. ....+..++.++...|
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g 388 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcC
Confidence 334445667788888888888777522 24555556677778888888888888888875322 2566677788888888
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHH
Q 038622 455 RTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELI 534 (587)
Q Consensus 455 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 534 (587)
++.+|++.+....... |.++..|..+..+|...|+ ..+|... .+..|+..|++++|+..+
T Consensus 389 ~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~-~~~a~~A------------------~AE~~~~~G~~~~A~~~l 448 (484)
T COG4783 389 KPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGN-RAEALLA------------------RAEGYALAGRLEQAIIFL 448 (484)
T ss_pred ChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCc-hHHHHHH------------------HHHHHHhCCCHHHHHHHH
Confidence 8888888888887764 7777788888888888887 5554332 334466677888888888
Q ss_pred HHHHhcCCC
Q 038622 535 DMVMDKAKF 543 (587)
Q Consensus 535 ~~~~~~~~~ 543 (587)
..+.+....
T Consensus 449 ~~A~~~~~~ 457 (484)
T COG4783 449 MRASQQVKL 457 (484)
T ss_pred HHHHHhccC
Confidence 877776643
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.7e-06 Score=65.22 Aligned_cols=154 Identities=16% Similarity=0.070 Sum_probs=88.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHH
Q 038622 380 YCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEA 459 (587)
Q Consensus 380 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 459 (587)
....=|++...+-..+-.. .-|+...-..|+.++...|+..+|...|++...--+.-++.....++++....+++.+|
T Consensus 66 ~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a 143 (251)
T COG4700 66 LQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAA 143 (251)
T ss_pred HHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHH
Confidence 3333344444433333222 34555556666666777777777777776666544444556666666667777777777
Q ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 038622 460 MRLFREMMEKAD-PPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVM 538 (587)
Q Consensus 460 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 538 (587)
...+++..+... ..++.....+...+...|+ +.+|...|+.++. .-|++......+..+.++|+.++|..-+..+.
T Consensus 144 ~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~-~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 144 QQTLEDLMEYNPAFRSPDGHLLFARTLAAQGK-YADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHhhcCCccCCCCchHHHHHHHHhcCC-chhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 777776666420 0112223345556666666 6667777777766 45666666666666667776666555444433
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.62 E-value=3e-05 Score=69.01 Aligned_cols=268 Identities=14% Similarity=0.024 Sum_probs=164.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 038622 58 FTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCK 137 (587)
Q Consensus 58 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 137 (587)
.......+.+..++..|+..+..+++.. |.+...|..-+..+...|+++++.--.+.-++.. +..........+++..
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a 129 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLA 129 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhh
Confidence 3444556667788888999888888886 5556677777778888888888887776665542 2223344445555555
Q ss_pred cCChHHHHHHHHHHH---------------hCCC-CCCcccHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 038622 138 VGHVKQALEVMDMML---------------QEGF-DPDVFTYNSL-ISGLCKLGEVEEAVEILNQMILRDCSPNTITYNT 200 (587)
Q Consensus 138 ~~~~~~a~~~~~~~~---------------~~~~-~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 200 (587)
.++..+|.+.++... .... +|....+..+ ..++...|+++.|.++--.+++.+ +.+......
T Consensus 130 ~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~v 208 (486)
T KOG0550|consen 130 LSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYV 208 (486)
T ss_pred hHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHh
Confidence 555555554444211 1100 1111222222 345566788888888777777665 445666655
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCC-----------HhhHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCCHH
Q 038622 201 LISTLCKENQVEEATELARVLTSKGILPD-----------VCTFNSLIQGLCLTSNFDVAMELFQEMKTKG---CQPDEF 266 (587)
Q Consensus 201 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~ 266 (587)
-..++.-.++.+.+...+.+.+..++... ...+..-.+-..+.|.+..|.+.|.+.+..+ ..++..
T Consensus 209 rg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nak 288 (486)
T KOG0550|consen 209 RGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAK 288 (486)
T ss_pred cccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHH
Confidence 56666677788888888877776532110 0112222334456777778888887777642 334455
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 038622 267 TYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQ 329 (587)
Q Consensus 267 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 329 (587)
.|...+.+..+.|+.++|+.-.+.+.+.+ +.-...+..-+.++...+++++|.+-++...+.
T Consensus 289 lY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 289 LYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66667777777777777777777777653 222344555566667777777777777776654
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.1e-06 Score=67.52 Aligned_cols=116 Identities=16% Similarity=0.143 Sum_probs=66.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCH
Q 038622 453 RKRTTEAMRLFREMMEKADPPD---ALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPE--FSSFYMLAEGLVSLGKE 527 (587)
Q Consensus 453 ~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~ 527 (587)
.++...+...++.+.+.. +.+ ......++..+...|+ +++|...|+.+++....|. +.+...|+.++...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~-~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGD-YDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 566666666666666642 222 2233345555666666 7777777777666431121 23445566667777777
Q ss_pred hHHHHHHHHHHhcCCCCCchhhhhhhHHHHHHHHHHHHhcchh
Q 038622 528 ETLVELIDMVMDKAKFSDRETSMVRGFLKIRKFQDALATFGDI 570 (587)
Q Consensus 528 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 570 (587)
++|+..++........+......+.+|...|++++|...|+++
T Consensus 102 d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 102 DEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7777776553333333333555666677777777777666654
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.4e-06 Score=70.71 Aligned_cols=130 Identities=14% Similarity=0.142 Sum_probs=105.9
Q ss_pred hHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhC--CCCHHHHHHH
Q 038622 421 VEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNG--GGPIGEAVDF 498 (587)
Q Consensus 421 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~A~~~ 498 (587)
.+....-++.-+..++. |.+-|..|+..|...|++..|...|.++.+.. ++++..+..++.++... +....++...
T Consensus 138 ~~~l~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 34444445555555554 77999999999999999999999999999974 77777777777765443 3346789999
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCchhhhhhhH
Q 038622 499 VIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDRETSMVRGF 554 (587)
Q Consensus 499 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 554 (587)
+++++. .+| +..+...|+..++..|++.+|...++.+++..|.++.+..++...
T Consensus 216 l~~al~--~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ 270 (287)
T COG4235 216 LRQALA--LDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERS 270 (287)
T ss_pred HHHHHh--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 999998 456 899999999999999999999999999999999999888777543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.2e-06 Score=79.46 Aligned_cols=99 Identities=16% Similarity=0.128 Sum_probs=78.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHc
Q 038622 445 PVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVS 523 (587)
Q Consensus 445 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 523 (587)
.-+..+...|++++|+.+|.++++.+ +.+...+..++.++...|+ +++|+..++++++ +.| +..++..++.+|..
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~-~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGN-FTEAVADANKAIE--LDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHH
Confidence 34566777888888888888888864 6667777778888888888 8888888888887 445 67788888888888
Q ss_pred cCCHhHHHHHHHHHHhcCCCCCch
Q 038622 524 LGKEETLVELIDMVMDKAKFSDRE 547 (587)
Q Consensus 524 ~g~~~~A~~~~~~~~~~~~~~~~~ 547 (587)
.|++++|+..++++++.+|.+...
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~ 106 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRF 106 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHH
Confidence 888888888888888888876543
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.51 E-value=2e-07 Score=51.92 Aligned_cols=34 Identities=44% Similarity=0.788 Sum_probs=29.1
Q ss_pred CCCCCCHhhHHHHHHHHHHcCChhhHHHHHHhhc
Q 038622 14 RGIKPDVSTFNILIKALCKAHQIRPAILMMEEMP 47 (587)
Q Consensus 14 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 47 (587)
+|++||..+|+.||++|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4678899999999999999999999999888873
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.6e-07 Score=76.93 Aligned_cols=100 Identities=18% Similarity=0.229 Sum_probs=88.4
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHH
Q 038622 480 HVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFLKI 557 (587)
Q Consensus 480 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 557 (587)
.-+.-+.+.++ |.+|+..|.++++ +.| |+..|...+.+|.+.|.++.|++-.+.++..+|.. ..|-.++.+|+..
T Consensus 86 ~eGN~~m~~~~-Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 86 NEGNKLMKNKD-YQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHHHhhh-HHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHcc
Confidence 34455677888 9999999999999 677 78888899999999999999999999999999986 4689999999999
Q ss_pred HHHHHHHHhcchhhhccCchhhhhh
Q 038622 558 RKFQDALATFGDILDSRMPRKTFRS 582 (587)
Q Consensus 558 ~~~~~A~~~~~~~~~~~~~~~~~~~ 582 (587)
|++.+|+..|+++++-.|..+++..
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K~ 187 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYKS 187 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHHH
Confidence 9999999999999999987775543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.2e-06 Score=64.58 Aligned_cols=103 Identities=16% Similarity=0.220 Sum_probs=74.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC-C-CHHHHH
Q 038622 441 QAYNPVIQALFRRKRTTEAMRLFREMMEKADPPD---ALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFL-P-EFSSFY 515 (587)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~-p-~~~~~~ 515 (587)
.++...+..+...|++++|.+.|.+++... +.+ ...+..++.++...|+ +++|...+++++..... | .+.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY-PKSTYAPNAHYWLGEAYYAQGK-YADAAKAFLAVVKKYPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHCCCCCcccHHHH
Confidence 456677777888888888888888887652 221 3445567777778888 88888888888763211 1 256677
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 516 MLAEGLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 516 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
.++.++.+.|++++|...++++++..|.+.
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 888888888888888888888888887653
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.2e-07 Score=67.37 Aligned_cols=79 Identities=20% Similarity=0.384 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHH
Q 038622 454 KRTTEAMRLFREMMEKADP-PDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLV 531 (587)
Q Consensus 454 g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 531 (587)
|+++.|+.+++++++.... ++...+..++.++.+.|+ +++|+.++++ .+ ..| +......++.++.+.|++++|+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~-y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGK-YEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTH-HHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCC-HHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4455555555555554210 122333334445555555 5555555544 22 122 2233344455555555555555
Q ss_pred HHHHH
Q 038622 532 ELIDM 536 (587)
Q Consensus 532 ~~~~~ 536 (587)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 55543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.3e-06 Score=74.74 Aligned_cols=132 Identities=11% Similarity=0.099 Sum_probs=65.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CChHhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC-CCCHH
Q 038622 407 TYGTLIGGLCKAGRVEVASKLLRSIQMK----GIV-LTPQAYNPVIQALFRRKRTTEAMRLFREMMEK----AD-PPDAL 476 (587)
Q Consensus 407 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~ 476 (587)
.|..|+..|.-.|+++.|+..-+.-+.. |-. ....++..++.++.-.|+++.|.+.|+..+.. |- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4445555555556666665543322211 111 11234555666666666666666666655432 10 11223
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH----cC-CCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 038622 477 TYKHVFRGLCNGGGPIGEAVDFVIEMLE----RG-FLPEFSSFYMLAEGLVSLGKEETLVELIDMVMD 539 (587)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~----~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 539 (587)
....++..|..... +++|+.+..+-+. .+ ......+++.|+.++...|..++|....+..++
T Consensus 277 scYSLgNtytll~e-~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKE-VQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 33345555555555 6666666555331 11 011344556666666666666666666555443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.3e-06 Score=61.19 Aligned_cols=97 Identities=19% Similarity=0.230 Sum_probs=51.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038622 443 YNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLV 522 (587)
Q Consensus 443 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 522 (587)
+..++..+...|++++|...++++.+.. +.+...+..++..+...++ +++|.+.++++++.. +.+...+..++.++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGK-YEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 3444555555556666666665555542 3333444445555555555 566666666555532 223445555555566
Q ss_pred ccCCHhHHHHHHHHHHhcCC
Q 038622 523 SLGKEETLVELIDMVMDKAK 542 (587)
Q Consensus 523 ~~g~~~~A~~~~~~~~~~~~ 542 (587)
..|++++|...++++.+..|
T Consensus 80 ~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 80 KLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHhHHHHHHHHHHHHccCC
Confidence 66666666666655555443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.0015 Score=58.21 Aligned_cols=287 Identities=15% Similarity=0.105 Sum_probs=185.6
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHhHHHHH--HHHHccCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCCHH
Q 038622 242 LTSNFDVAMELFQEMKTKGCQPDEFTYNMLI--DSLCSRGMLEEALKLLKEMESSGCARNVV--TYNTLIDGFCKLKRIE 317 (587)
Q Consensus 242 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~ 317 (587)
-.||-..|.+.-.+..+. +..|......++ +.-.-.|+++.|.+-|+.|... |... .+..|.-.-.+.|+.+
T Consensus 96 gAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 96 GAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred ccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHH
Confidence 346667776666554432 123333333333 3345578899999999988863 3332 2233333345678888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHhh--HHHHHHH---HHhcCCHHHHHH
Q 038622 318 EAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEG-LKPDKFT--YNSLLTY---YCRAGDIKRAAD 391 (587)
Q Consensus 318 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~--~~~l~~~---~~~~~~~~~A~~ 391 (587)
.|.++-+.....- |.-...+...+...+..|+|+.|+++.+...... +.++..- -..|+.+ -.-..+...|..
T Consensus 172 aAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 172 AARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 8888888776653 5556778888888999999999999988766532 2333321 1112211 112235677777
Q ss_pred HHHHHHHCCCCCCc-chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 038622 392 IVQNMTSNGCEPDI-VTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEK- 469 (587)
Q Consensus 392 ~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 469 (587)
.-.+..+. .|+. ..-..-..++.+.|+..++-.+++.+-+. .|.+..+..+ ...+.|+ .++.-++++.+.
T Consensus 251 ~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia~lY--~~ar~gd--ta~dRlkRa~~L~ 322 (531)
T COG3898 251 DALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDIALLY--VRARSGD--TALDRLKRAKKLE 322 (531)
T ss_pred HHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHHHHHH--HHhcCCC--cHHHHHHHHHHHH
Confidence 77766663 4442 23344577899999999999999999885 4555543322 2344454 344444444332
Q ss_pred CC-CCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-cCCHhHHHHHHHHHHhcCCCC
Q 038622 470 AD-PPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVS-LGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 470 ~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~ 544 (587)
.+ +.+......+..+....|+ +..|..-.+.+.+ ..|....|..|+++-.. .|+-.+++.++-++++...++
T Consensus 323 slk~nnaes~~~va~aAlda~e-~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGE-FSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred hcCccchHHHHHHHHHHHhccc-hHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 12 3445566677777778888 9999998888887 57989999999998764 599999999999998865543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.8e-06 Score=64.79 Aligned_cols=101 Identities=17% Similarity=0.171 Sum_probs=85.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC----Cchh
Q 038622 477 TYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPE----FSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS----DRET 548 (587)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~ 548 (587)
++...+..+...|+ +++|.+.+.++++.. |+ ...+..++.++.+.|++++|...++.++...|.+ ..+.
T Consensus 4 ~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (119)
T TIGR02795 4 AYYDAALLVLKAGD-YADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence 45567777888999 999999999999743 42 5678889999999999999999999999988774 2478
Q ss_pred hhhhhHHHHHHHHHHHHhcchhhhccCchhhh
Q 038622 549 SMVRGFLKIRKFQDALATFGDILDSRMPRKTF 580 (587)
Q Consensus 549 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 580 (587)
.++.++.+.|++.+|+..++++++..|.....
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 88899999999999999999999998765543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.1e-05 Score=74.39 Aligned_cols=129 Identities=19% Similarity=0.196 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 038622 55 ERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNG 134 (587)
Q Consensus 55 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 134 (587)
......++..+...++++.|+.+++++.+.. +.+...++..+...++-.+|.+++.+.++.. +.+...+..-+..
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~----pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERD----PEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEF 243 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcC----CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3344556666777788888888888888764 2345557777777888888888888888653 5566666777777
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038622 135 LCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILR 189 (587)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 189 (587)
+.+.++++.|+++.+++.... +.+..+|..|+.+|...|+++.|+-.++.+.-.
T Consensus 244 Ll~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 888888888888888888762 224568888888888888888888888877543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00018 Score=56.72 Aligned_cols=134 Identities=14% Similarity=0.064 Sum_probs=70.9
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CChHhHHH
Q 038622 367 KPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIV-LTPQAYNP 445 (587)
Q Consensus 367 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 445 (587)
.|+...-..|..+..+.|++.+|...|++...--.-.|......++++....+++..|...++++.+..+. .++.....
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 34555555556666666666666666666554323334555555666666666666666666665554211 12233445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 038622 446 VIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEML 503 (587)
Q Consensus 446 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~ 503 (587)
+++.+...|++.+|...|+.+++. .|+...-......+..+|+ .++|...+....
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr-~~ea~aq~~~v~ 220 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGR-LREANAQYVAVV 220 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcc-hhHHHHHHHHHH
Confidence 556666666666666666666653 3443333334444555555 455554444433
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.6e-06 Score=75.38 Aligned_cols=284 Identities=17% Similarity=0.123 Sum_probs=161.4
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHH--H--cCC-CCCHHHHHHHH
Q 038622 272 IDSLCSRGMLEEALKLLKEMESSGCARNV----VTYNTLIDGFCKLKRIEEAEEIFDEME--I--QGI-SRNSVTYNTLI 342 (587)
Q Consensus 272 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~--~--~~~-~~~~~~~~~l~ 342 (587)
+.-+++.|+....+.+|+.+++.| ..+. ..|..++.+|.-.+++++|+++...=+ . .|- .........+.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 445778888888888888888876 3333 345666777777777888877654311 1 110 01122223334
Q ss_pred HHHHhcCCHHHHHHHHHHHHH----cCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CcchHHHHHHHH
Q 038622 343 DGLCKSRRVEDAAQLMDQMIM----EGLK-PDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCE-P-DIVTYGTLIGGL 415 (587)
Q Consensus 343 ~~~~~~~~~~~A~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~ 415 (587)
..+--.|.+++|+....+-+. .|-. .....+..+...|...|..- |.+ | +...+..=
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~------------g~~~pee~g~f~~e---- 166 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCT------------GLEAPEEKGAFNAE---- 166 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhccccc------------CCCChhhcccccHH----
Confidence 444445566666555443322 1100 01122333333333333210 110 0 00001000
Q ss_pred HhcCChHHHHHHHHHHHHc----CCC-CChHhHHHHHHHHHhcCCHHHHHHHHHHHHh----cCC-CCCHHHHHHHHHHH
Q 038622 416 CKAGRVEVASKLLRSIQMK----GIV-LTPQAYNPVIQALFRRKRTTEAMRLFREMME----KAD-PPDALTYKHVFRGL 485 (587)
Q Consensus 416 ~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~~~~~l~~~~ 485 (587)
....++.|.++|.+-++. |-. -....|-.++..|.-.|+++.|+..-+.-+. .|. ......+..++.++
T Consensus 167 -v~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~h 245 (639)
T KOG1130|consen 167 -VTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCH 245 (639)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhh
Confidence 011234444554433221 100 0124566777778888999999987665443 221 12344567788888
Q ss_pred HhCCCCHHHHHHHHHHHH----HcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCC-------CCchhhhhhh
Q 038622 486 CNGGGPIGEAVDFVIEML----ERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKF-------SDRETSMVRG 553 (587)
Q Consensus 486 ~~~~~~~~~A~~~~~~~~----~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~~~~~~~ 553 (587)
.-.|+ ++.|.++|+..+ +.|-+. .....+.|++.|.-..++++|+.+..+-+..... --..++++.+
T Consensus 246 iflg~-fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna 324 (639)
T KOG1130|consen 246 IFLGN-FELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNA 324 (639)
T ss_pred hhhcc-cHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 89999 999999999866 333122 4567788999999999999999998875543322 1236788888
Q ss_pred HHHHHHHHHHHHhcchhhhcc
Q 038622 554 FLKIRKFQDALATFGDILDSR 574 (587)
Q Consensus 554 ~~~~~~~~~A~~~~~~~~~~~ 574 (587)
|...|.-++|+......+++.
T Consensus 325 ~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 325 FNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred HHhhhhHHHHHHHHHHHHHHH
Confidence 888999888888777666544
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.3e-06 Score=61.91 Aligned_cols=80 Identities=24% Similarity=0.378 Sum_probs=55.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHHHHHHHHH
Q 038622 488 GGGPIGEAVDFVIEMLERGFL-PEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFLKIRKFQDALA 565 (587)
Q Consensus 488 ~~~~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~ 565 (587)
.|+ ++.|+.+++++++.... |+...+..++.+|.+.|++++|+.++++ .+.++.+ +....++.++++.|++++|++
T Consensus 2 ~~~-y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGN-YENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT--HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred Ccc-HHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 455 88888888888864311 1455666678888888888888888888 5555544 445666788888888888888
Q ss_pred hcch
Q 038622 566 TFGD 569 (587)
Q Consensus 566 ~~~~ 569 (587)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7765
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.0036 Score=60.10 Aligned_cols=206 Identities=11% Similarity=0.084 Sum_probs=129.6
Q ss_pred CCCHhhHHHHHHHHHHcCChhhHHHHHHhhccC-CCCC--------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 038622 17 KPDVSTFNILIKALCKAHQIRPAILMMEEMPGY-GLAP--------DERTFTTLMQGLIEEGNLDGALRIREQMVEHGCL 87 (587)
Q Consensus 17 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 87 (587)
.|.+..|..|..+.+..-.++-|...|-+.... |++. +......=+.+ --|+|++|.++|-.+-+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhh--
Confidence 578888988888888888888888887766542 2110 00111111122 2378888888887776553
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHH
Q 038622 88 VTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEG-FNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSL 166 (587)
Q Consensus 88 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 166 (587)
..+..+.+.|++-.+.++++.--... -..-..+|+.+...++....+++|.+.|...... ...
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~ 828 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQ 828 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhH
Confidence 34556677788877777665321110 0111346888888888888888888888764321 235
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh
Q 038622 167 ISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNF 246 (587)
Q Consensus 167 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 246 (587)
+.++.+..++++-+.+...+ +.+....-.++..+.+.|.-++|.+.+-+.. .+ ...+..|...++|
T Consensus 829 ~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~p------kaAv~tCv~LnQW 894 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS---LP------KAAVHTCVELNQW 894 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc---Cc------HHHHHHHHHHHHH
Confidence 66676666666655544443 4566677788888888898888887664322 11 2344567777788
Q ss_pred HHHHHHHHHH
Q 038622 247 DVAMELFQEM 256 (587)
Q Consensus 247 ~~a~~~~~~~ 256 (587)
.+|.++-+..
T Consensus 895 ~~avelaq~~ 904 (1189)
T KOG2041|consen 895 GEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHhc
Confidence 8887776543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=5.1e-05 Score=73.64 Aligned_cols=142 Identities=11% Similarity=0.001 Sum_probs=94.1
Q ss_pred CCcchHHHHHHHHH--hc---CChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc--------CCHHHHHHHHHHHHhc
Q 038622 403 PDIVTYGTLIGGLC--KA---GRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRR--------KRTTEAMRLFREMMEK 469 (587)
Q Consensus 403 ~~~~~~~~l~~~~~--~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~ 469 (587)
.+...|...+++.. .. ++...|..+|+++.+.++. ....+..++.++... .+...+.+...++...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 34455555444432 22 2356677777777774322 234444444333221 1234555555555543
Q ss_pred -CCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCchh
Q 038622 470 -ADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDRET 548 (587)
Q Consensus 470 -~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 548 (587)
..+.++..+..++-.....|+ +++|...++++++ +.|+..+|..++.++...|++++|...++++...+|..++++
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~-~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~ 490 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGK-TDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLY 490 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCC-HHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHH
Confidence 124556666666666666788 9999999999998 458888999999999999999999999999999999987643
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0027 Score=57.79 Aligned_cols=137 Identities=11% Similarity=0.078 Sum_probs=85.3
Q ss_pred HHHcCChhhHHHHHHhhccCCCCCCHHH------HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHH--HHH
Q 038622 30 LCKAHQIRPAILMMEEMPGYGLAPDERT------FTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVH--GFC 101 (587)
Q Consensus 30 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~ 101 (587)
+-+++++.+|.++|.++.+.. ..++.. -+.++++|.. .+.+.....+....+.. + ...|..+.. ...
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~-~--~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF-G--KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc-C--CchHHHHHHHHHHH
Confidence 456899999999999987653 233222 3456666654 45666666666665543 2 333444444 345
Q ss_pred hcCCHHHHHHHHHHHHHC--CCCCC------------hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC----CCcccH
Q 038622 102 KEGRIEDALSFIQEMVSE--GFNPD------------QFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFD----PDVFTY 163 (587)
Q Consensus 102 ~~~~~~~a~~~~~~~~~~--~~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~ 163 (587)
+.+++.+|++.+...... +..+. ...=+..+..+...|++.+++.+++++...=.+ -+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 778999999988877654 21111 111234567778899999999999888764222 466777
Q ss_pred HHHHHHHH
Q 038622 164 NSLISGLC 171 (587)
Q Consensus 164 ~~l~~~~~ 171 (587)
+.++-.+.
T Consensus 171 d~~vlmls 178 (549)
T PF07079_consen 171 DRAVLMLS 178 (549)
T ss_pred HHHHHHHh
Confidence 76554443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.30 E-value=3e-06 Score=57.56 Aligned_cols=65 Identities=18% Similarity=0.280 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccC-CHhHHHHHHHHHHhcCC
Q 038622 475 ALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLG-KEETLVELIDMVMDKAK 542 (587)
Q Consensus 475 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~ 542 (587)
+..|..++..+...|+ +++|+..|+++++. .| ++.++..++.++...| ++++|++.++++++.+|
T Consensus 3 a~~~~~~g~~~~~~~~-~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGD-YEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTH-HHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4556666667777777 77777777777773 35 5667777777777777 57777777777777665
|
... |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0028 Score=57.70 Aligned_cols=445 Identities=14% Similarity=0.150 Sum_probs=222.3
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCChh-----hH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH--HHH
Q 038622 65 LIEEGNLDGALRIREQMVEHGCLVTNV-----TV-NVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVN--GLC 136 (587)
Q Consensus 65 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~ 136 (587)
+-+++++.+|..+|.++.+.. ..++. ++ +.++++|. .++.+.....+....+. .| ...|..+.. ...
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHH
Confidence 347899999999999987753 32322 22 33444544 45566666666666554 22 223333333 345
Q ss_pred hcCChHHHHHHHHHHHhC--CCCCC---c---------ccHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCChhhH
Q 038622 137 KVGHVKQALEVMDMMLQE--GFDPD---V---------FTYNSLISGLCKLGEVEEAVEILNQMILRD----CSPNTITY 198 (587)
Q Consensus 137 ~~~~~~~a~~~~~~~~~~--~~~~~---~---------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~ 198 (587)
+.+.+.+|.+.+..-... +..|. . ..-...+.++...|++.+++.+++++...- ...+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 778899999888776654 21111 0 011234567778899999998888876543 33677777
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHc
Q 038622 199 NTLISTLCKENQVEEATELARVLTSK-GILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCS 277 (587)
Q Consensus 199 ~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 277 (587)
+.++-.+.+. .+-++.+. ....-+. |..++-.|.+.=..-++. -| ..+.|.......++....-
T Consensus 171 d~~vlmlsrS--------YfLEl~e~~s~dl~pd-yYemilfY~kki~~~d~~-~Y-----~k~~peeeL~s~imqhlfi 235 (549)
T PF07079_consen 171 DRAVLMLSRS--------YFLELKESMSSDLYPD-YYEMILFYLKKIHAFDQR-PY-----EKFIPEEELFSTIMQHLFI 235 (549)
T ss_pred HHHHHHHhHH--------HHHHHHHhcccccChH-HHHHHHHHHHHHHHHhhc-hH-----HhhCcHHHHHHHHHHHHHh
Confidence 7655544332 22222111 0011111 222222222211000000 00 0112222223333322221
Q ss_pred c--CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhcCC
Q 038622 278 R--GMLEEALKLLKEMESSGCARNV-VTYNTLIDGFCKLKRIEEAEEIFDEMEIQGIS----RNSVTYNTLIDGLCKSRR 350 (587)
Q Consensus 278 ~--~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~ 350 (587)
. ....--.++++...+.-+.|+. -+...+..-+.+ +.+++..+.+.+....+. .-..+|..++....+.++
T Consensus 236 ~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~ 313 (549)
T PF07079_consen 236 VPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQ 313 (549)
T ss_pred CCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 1112222333333222222332 223333333333 444444444444332111 112355666666777777
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHH-------HHHH----hcCCHHHHHHHHHHHHHCCCCCCcchHHHH---HHHHH
Q 038622 351 VEDAAQLMDQMIMEGLKPDKFTYNSLL-------TYYC----RAGDIKRAADIVQNMTSNGCEPDIVTYGTL---IGGLC 416 (587)
Q Consensus 351 ~~~A~~~~~~~~~~~~~~~~~~~~~l~-------~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l---~~~~~ 416 (587)
...|.+.+.-+.. ..|+...-..++ ...+ ..-+...=+.+|+.....++. .......+ +.-+-
T Consensus 314 T~~a~q~l~lL~~--ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW 390 (549)
T PF07079_consen 314 TEEAKQYLALLKI--LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLW 390 (549)
T ss_pred HHHHHHHHHHHHh--cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHH
Confidence 7777777766554 344433211111 1111 011223334556666554443 22222222 23344
Q ss_pred hcCC-hHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc--------CCHHHHHHHHHHHHhcCCCCC----HHHHHHHHH
Q 038622 417 KAGR-VEVASKLLRSIQMKGIVLTPQAYNPVIQALFRR--------KRTTEAMRLFREMMEKADPPD----ALTYKHVFR 483 (587)
Q Consensus 417 ~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~ 483 (587)
+.|. -++|+.+++.+.+- .+......+.+..+.+. .....-+.+-.-+.+.|++|- ...-+.+..
T Consensus 391 ~~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaD 468 (549)
T PF07079_consen 391 EIGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLAD 468 (549)
T ss_pred hcCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHH
Confidence 5555 88899999988874 33332222222222211 122222222222233466553 233333433
Q ss_pred H--HHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 038622 484 G--LCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMD 539 (587)
Q Consensus 484 ~--~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 539 (587)
+ ++..|+ +.++.-+-.-..+ +.|++.++..+|-++....+|++|...+..++-
T Consensus 469 AEyLysqge-y~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 469 AEYLYSQGE-YHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHHhccc-HHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 3 567888 9999888887777 789999999999999999999999999988654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.2e-05 Score=71.89 Aligned_cols=104 Identities=14% Similarity=-0.001 Sum_probs=62.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCC
Q 038622 412 IGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGP 491 (587)
Q Consensus 412 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 491 (587)
+..+...|++++|+..|++++...+. +...|..++.++...|++++|+..+++++..+ +.+...+..++.++...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~- 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE- 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC-
Confidence 44455566666666666666665333 44566666666666666666666666666653 4455556666666666666
Q ss_pred HHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 038622 492 IGEAVDFVIEMLERGFLP-EFSSFYMLAEG 520 (587)
Q Consensus 492 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 520 (587)
+++|+..++++++ +.| +..+...+..+
T Consensus 86 ~~eA~~~~~~al~--l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGAS--LAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 6666666666666 334 34444444333
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.3e-06 Score=56.45 Aligned_cols=61 Identities=18% Similarity=0.290 Sum_probs=47.9
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 481 VFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 481 l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
++..+...|+ +++|++.++++++. .| ++.++..++.++...|++++|+..++++++..|.+
T Consensus 3 ~a~~~~~~g~-~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGD-YDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTH-HHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCC-HHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 4556778888 88888888888874 36 67888888888888888888888888888888764
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.1e-05 Score=59.47 Aligned_cols=95 Identities=20% Similarity=0.265 Sum_probs=82.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC-chhhhhhhHH
Q 038622 478 YKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD-RETSMVRGFL 555 (587)
Q Consensus 478 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~ 555 (587)
+..++..+...|+ +++|...++++++. .| +...+..++.++...|++++|.+.++++.+..|... .+..++.++.
T Consensus 3 ~~~~a~~~~~~~~-~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGD-YDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhc-HHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 4556777788898 99999999999984 45 567888999999999999999999999999988774 6788889999
Q ss_pred HHHHHHHHHHhcchhhhccC
Q 038622 556 KIRKFQDALATFGDILDSRM 575 (587)
Q Consensus 556 ~~~~~~~A~~~~~~~~~~~~ 575 (587)
..|++.+|...+.++.+..+
T Consensus 80 ~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 80 KLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHhHHHHHHHHHHHHccCC
Confidence 99999999999999887654
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.5e-05 Score=63.63 Aligned_cols=100 Identities=16% Similarity=0.132 Sum_probs=59.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-C-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 038622 442 AYNPVIQALFRRKRTTEAMRLFREMMEKADPP-D-ALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLA 518 (587)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~-~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 518 (587)
.+..++..+...|++++|...|+++++....+ + ...+..++..+...|+ +++|+..++++++. .| +...+..++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~--~p~~~~~~~~lg 113 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGE-HDKALEYYHQALEL--NPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh--CcccHHHHHHHH
Confidence 45555666666666666666666666532111 1 2345555666666666 66666666666652 34 455555666
Q ss_pred HHHHccCC--------------HhHHHHHHHHHHhcCCCC
Q 038622 519 EGLVSLGK--------------EETLVELIDMVMDKAKFS 544 (587)
Q Consensus 519 ~~~~~~g~--------------~~~A~~~~~~~~~~~~~~ 544 (587)
.++...|+ +++|.+.++++...+|.+
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 66666555 566777777777777654
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.3e-05 Score=71.70 Aligned_cols=135 Identities=13% Similarity=0.101 Sum_probs=87.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038622 407 TYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFR-RKRTTEAMRLFREMMEKADPPDALTYKHVFRGL 485 (587)
Q Consensus 407 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 485 (587)
+|..+++...+.+..+.|..+|.++.+.+ ..+...|...+..-.. .++.+.|.++|+..++. ++.+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 46666677777777778888887777532 2345666666666444 45566688888877776 466667777777777
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 486 CNGGGPIGEAVDFVIEMLERGFLPE---FSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 486 ~~~~~~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
...++ .+.|..+|++++.. +.++ ...|...+..-.+.|+.+.+..+.+++.+.-|...
T Consensus 81 ~~~~d-~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 81 IKLND-INNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHTT--HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHhCc-HHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 77777 77788888877753 3332 24666677777777777777777777777766643
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.3e-06 Score=47.67 Aligned_cols=32 Identities=53% Similarity=1.000 Sum_probs=17.4
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 038622 120 GFNPDQFTYNTLVNGLCKVGHVKQALEVMDMM 151 (587)
Q Consensus 120 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 151 (587)
|+.||..+|+.++.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34555555555555555555555555555544
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.6e-06 Score=57.83 Aligned_cols=66 Identities=14% Similarity=0.280 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHH-HHHHHHHhcchhhhccC
Q 038622 510 EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFLKIR-KFQDALATFGDILDSRM 575 (587)
Q Consensus 510 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~ 575 (587)
++..+..+|..+...|++++|+..|+++++.+|.. ..+..++.++...| ++.+|++.|+++++.+|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 46788999999999999999999999999999987 45899999999999 89999999999988654
|
... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=7.5e-05 Score=58.35 Aligned_cols=96 Identities=9% Similarity=0.044 Sum_probs=76.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038622 442 AYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGL 521 (587)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 521 (587)
.....+.-+...|++++|..+|.-+.-.+ +-+...+..++.++...++ +++|+..|..+...+ ..|+......+.+|
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~-y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~ 115 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQ-FQKACDLYAVAFTLL-KNDYRPVFFTGQCQ 115 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcc-cCCCCccchHHHHH
Confidence 44566677788999999999999888765 6667777777777777777 999999999888643 23666678889999
Q ss_pred HccCCHhHHHHHHHHHHhc
Q 038622 522 VSLGKEETLVELIDMVMDK 540 (587)
Q Consensus 522 ~~~g~~~~A~~~~~~~~~~ 540 (587)
...|+.+.|+..|+.+++.
T Consensus 116 l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 116 LLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHhCCHHHHHHHHHHHHhC
Confidence 9999999999999998884
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00073 Score=58.88 Aligned_cols=185 Identities=9% Similarity=0.012 Sum_probs=109.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhh---HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCh-hh
Q 038622 53 PDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVT---VNVLVHGFCKEGRIEDALSFIQEMVSEGF-NPDQ-FT 127 (587)
Q Consensus 53 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~ 127 (587)
.++..+...+..+...|++++|...|+.+.... |.+... ...++.++.+.++++.|...+++.++... .|+. .+
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 456666677777888999999999999998874 434433 35677889999999999999999988631 1111 12
Q ss_pred HHHHHHHHHhcC---------------C---hHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038622 128 YNTLVNGLCKVG---------------H---VKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILR 189 (587)
Q Consensus 128 ~~~l~~~~~~~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 189 (587)
+..++......+ + ..+|...|+.+++. -|+..- ..+|...+..+...
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~y-------------a~~A~~rl~~l~~~ 173 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQY-------------TTDATKRLVFLKDR 173 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCChh-------------HHHHHHHHHHHHHH
Confidence 333332211111 2 24566777777775 344321 22333222222211
Q ss_pred CCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 038622 190 DCSPNTITYNTLISTLCKENQVEEATELARVLTSK--GILPDVCTFNSLIQGLCLTSNFDVAMELFQEMK 257 (587)
Q Consensus 190 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 257 (587)
-...-..++..|.+.|.+..|..-++.+.+. +.+........+..+|...|..++|..+...+.
T Consensus 174 ----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 ----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred ----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0111124556677777777777777776654 122234455666677777777777776665443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.8e-05 Score=67.54 Aligned_cols=131 Identities=9% Similarity=0.027 Sum_probs=91.3
Q ss_pred hhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038622 21 STFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIE-EGNLDGALRIREQMVEHGCLVTNVTVNVLVHG 99 (587)
Q Consensus 21 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 99 (587)
.+|..+++...+.+..+.|..+|.++.+.+ ..+..+|...+..-.. .++.+.|..+|+...+. .+.+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467788888888888888888888887543 3455666666666444 56666688888888776 46677778888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 038622 100 FCKEGRIEDALSFIQEMVSEGFNPDQ---FTYNTLVNGLCKVGHVKQALEVMDMMLQE 154 (587)
Q Consensus 100 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (587)
+...|+.+.|+.+|++.+.. ++++. ..|..++..-.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888888765 23322 36777777777778888888887777764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.13 E-value=3e-06 Score=56.64 Aligned_cols=61 Identities=15% Similarity=0.197 Sum_probs=55.2
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHHHHHHHHHhcchhhhccCc
Q 038622 516 MLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFLKIRKFQDALATFGDILDSRMP 576 (587)
Q Consensus 516 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 576 (587)
.++..+.+.|++++|+..++++++..|.+ +.+..++.++.+.|++++|+..|+++++..|.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 47889999999999999999999999986 56899999999999999999999999987764
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.11 E-value=7.7e-05 Score=61.37 Aligned_cols=101 Identities=17% Similarity=0.096 Sum_probs=66.3
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 038622 441 QAYNPVIQALFRRKRTTEAMRLFREMMEKADPP--DALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYML 517 (587)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l 517 (587)
..+..++..+...|++++|+..|++++.....+ ...++..++..+...|+ +++|+..++++++. .| ....+..+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~-~~eA~~~~~~Al~~--~~~~~~~~~~l 112 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGE-HTKALEYYFQALER--NPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh--CcCcHHHHHHH
Confidence 456677777777888888888888887642111 22456677777777777 88888888888763 44 45556666
Q ss_pred HHHHH-------ccCCHh-------HHHHHHHHHHhcCCCC
Q 038622 518 AEGLV-------SLGKEE-------TLVELIDMVMDKAKFS 544 (587)
Q Consensus 518 ~~~~~-------~~g~~~-------~A~~~~~~~~~~~~~~ 544 (587)
+.++. ..|+++ +|..+++++....|.+
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 66666 666666 4455555566666644
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00026 Score=61.12 Aligned_cols=116 Identities=12% Similarity=0.095 Sum_probs=80.0
Q ss_pred hhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC---CHHHHHHH
Q 038622 36 IRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEG---RIEDALSF 112 (587)
Q Consensus 36 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~ 112 (587)
++..+.-++.-++.+ |.|.+.|..++..|...|+++.|...|.++.+.. +.++..+..++.++.... ...++..+
T Consensus 138 ~~~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 344444445555554 6677777777777777788888877777777765 566777777776655442 34577777
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 038622 113 IQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQE 154 (587)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (587)
|+++++.+ +-++.+...+...+...|++.+|...|+.|++.
T Consensus 216 l~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 216 LRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 77777764 556667777777777778888888888777775
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00018 Score=54.00 Aligned_cols=95 Identities=21% Similarity=0.157 Sum_probs=54.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC---CHHHHHHH
Q 038622 443 YNPVIQALFRRKRTTEAMRLFREMMEKADPPD--ALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP---EFSSFYML 517 (587)
Q Consensus 443 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p---~~~~~~~l 517 (587)
....++++-..|+.++|+.+|++++..|.... ...+..++..+...|+ +++|...+++.+... +. +......+
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~-~deA~~~L~~~~~~~-p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGR-YDEALALLEEALEEF-PDDELNAALRVFL 81 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHC-CCccccHHHHHHH
Confidence 34555666666666666666666666553332 2344455666666666 666666666666531 11 22333445
Q ss_pred HHHHHccCCHhHHHHHHHHHHh
Q 038622 518 AEGLVSLGKEETLVELIDMVMD 539 (587)
Q Consensus 518 ~~~~~~~g~~~~A~~~~~~~~~ 539 (587)
+-++...|+.++|++++-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 5566666666666666655443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=8.8e-05 Score=72.01 Aligned_cols=143 Identities=13% Similarity=0.019 Sum_probs=103.9
Q ss_pred CCCChHhHHHHHHHHHh--c---CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHH
Q 038622 436 IVLTPQAYNPVIQALFR--R---KRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGG-------PIGEAVDFVIEML 503 (587)
Q Consensus 436 ~~~~~~~~~~l~~~~~~--~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~A~~~~~~~~ 503 (587)
.+.+..+|..++++... . ++...|+.+|+++++.+ |.....+..+..++..... +...+.+..+++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 44567788877766443 2 23779999999999974 4445555544443322211 1345555566655
Q ss_pred HcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCchhhhhhhHHHHHHHHHHHHhcchhhhccCchhh
Q 038622 504 ERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDRETSMVRGFLKIRKFQDALATFGDILDSRMPRKT 579 (587)
Q Consensus 504 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 579 (587)
.....| ++.++..++-.+...|++++|...++++++.+|....+..++.++...|+.++|+..|.++...++..+.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 432233 6788888888888899999999999999999996566788889999999999999999999998877553
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.9e-05 Score=67.91 Aligned_cols=104 Identities=13% Similarity=0.139 Sum_probs=78.7
Q ss_pred hHhHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CCC-CHHH
Q 038622 440 PQAYNPVIQA-LFRRKRTTEAMRLFREMMEKADPPD---ALTYKHVFRGLCNGGGPIGEAVDFVIEMLERG-FLP-EFSS 513 (587)
Q Consensus 440 ~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~-~~p-~~~~ 513 (587)
...+...+.. ....|++++|+..|+.+++.. |.+ +..+..++..+...|+ +++|...|+++++.. -.| .+++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-P~s~~a~~A~y~LG~~y~~~g~-~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-PDSTYQPNANYWLGQLNYNKGK-KDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCcchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCCCcchhHH
Confidence 3333344433 466789999999999999863 322 3466778888888888 999999999998642 112 4778
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 514 FYMLAEGLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 514 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
+..++.++...|++++|...|+++++..|.++
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 88889999999999999999999999888764
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0001 Score=60.61 Aligned_cols=95 Identities=12% Similarity=-0.047 Sum_probs=57.6
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038622 405 IVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVL--TPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVF 482 (587)
Q Consensus 405 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 482 (587)
...+..++..+...|++++|...++++......+ ...++..++.++...|++++|+..+++++... +.....+..++
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3445666666667777777777777776542222 12466777777777777777777777777652 33344455555
Q ss_pred HHHH-------hCCCCHHHHHHHHHH
Q 038622 483 RGLC-------NGGGPIGEAVDFVIE 501 (587)
Q Consensus 483 ~~~~-------~~~~~~~~A~~~~~~ 501 (587)
..+. ..|+ +++|...+.+
T Consensus 114 ~i~~~~~~~~~~~g~-~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGD-SEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHccc-HHHHHHHHHH
Confidence 5555 5666 6644444443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0086 Score=53.56 Aligned_cols=249 Identities=13% Similarity=0.127 Sum_probs=139.3
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHh--HHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 038622 242 LTSNFDVAMELFQEMKTKGCQPDEFT--YNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEA 319 (587)
Q Consensus 242 ~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 319 (587)
-.|+++.|.+-|+.|... |.... ...+.-.-.+.|..+.|..+-+..-... +.-.......+...+..|+++.|
T Consensus 132 ~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~A 207 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGA 207 (531)
T ss_pred hcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHH
Confidence 446666666666666542 22111 1112222234566666666666555443 33344555666666667777777
Q ss_pred HHHHHHHHHcC-CCCCHHH--HHHHHHH--H-HhcCCHHHHHHHHHHHHHcCCCCCHh-hHHHHHHHHHhcCCHHHHHHH
Q 038622 320 EEIFDEMEIQG-ISRNSVT--YNTLIDG--L-CKSRRVEDAAQLMDQMIMEGLKPDKF-TYNSLLTYYCRAGDIKRAADI 392 (587)
Q Consensus 320 ~~~~~~~~~~~-~~~~~~~--~~~l~~~--~-~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~ 392 (587)
+++.+.-.... +.++..- -..++.+ . .-..+...|...-.+..+ +.||.. .-.....++.+.|+..++-.+
T Consensus 208 lkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~i 285 (531)
T COG3898 208 LKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKI 285 (531)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhH
Confidence 77666543321 1121110 0111111 1 112345556666555555 455543 223345678888999999999
Q ss_pred HHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCC-hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038622 393 VQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMK-GIVLT-PQAYNPVIQALFRRKRTTEAMRLFREMMEKA 470 (587)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 470 (587)
++.+-+..+.|+ +.. +..+.+.|+ .+..-+++..+. ..+|+ .+....+..+....|++..|..--+.+.+.
T Consensus 286 lE~aWK~ePHP~--ia~--lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~- 358 (531)
T COG3898 286 LETAWKAEPHPD--IAL--LYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE- 358 (531)
T ss_pred HHHHHhcCCChH--HHH--HHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh-
Confidence 998887644443 222 222334444 344444443322 23444 466677788888889998888888877763
Q ss_pred CCCCHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHc
Q 038622 471 DPPDALTYKHVFRGLCN-GGGPIGEAVDFVIEMLER 505 (587)
Q Consensus 471 ~~~~~~~~~~l~~~~~~-~~~~~~~A~~~~~~~~~~ 505 (587)
.|....|..+...-.. .|+ -.++...+.++++.
T Consensus 359 -~pres~~lLlAdIeeAetGD-qg~vR~wlAqav~A 392 (531)
T COG3898 359 -APRESAYLLLADIEEAETGD-QGKVRQWLAQAVKA 392 (531)
T ss_pred -CchhhHHHHHHHHHhhccCc-hHHHHHHHHHHhcC
Confidence 6777777777666443 377 88888888888863
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.03 E-value=8e-05 Score=67.05 Aligned_cols=170 Identities=11% Similarity=0.079 Sum_probs=103.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCcchHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCC--hH
Q 038622 372 TYNSLLTYYCRAGDIKRAADIVQNMTSN----GCE-PDIVTYGTLIGGLCKAGRVEVASKLLRSIQMK---GIVLT--PQ 441 (587)
Q Consensus 372 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~--~~ 441 (587)
.|...+..|...+++++|...|.+.... +-. .....|...+.+|.+. ++++|...++++... .-.++ ..
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~ 115 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAK 115 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 5667777788888888888888876542 111 0123444445555444 888888888877654 11222 24
Q ss_pred hHHHHHHHHHhc-CCHHHHHHHHHHHHhc----CCCCC--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-----
Q 038622 442 AYNPVIQALFRR-KRTTEAMRLFREMMEK----ADPPD--ALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP----- 509 (587)
Q Consensus 442 ~~~~l~~~~~~~-g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p----- 509 (587)
.+..++..|... |++++|++.|+++.+. + .+. ...+..++..+...|+ +++|++.|++........
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~-y~~A~~~~e~~~~~~l~~~l~~~ 193 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGR-YEEAIEIYEEVAKKCLENNLLKY 193 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHhhcccccch
Confidence 566777777777 7888888888888763 1 111 2345566667777787 888888888877532221
Q ss_pred CH-HHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 510 EF-SSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 510 ~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
+. ..+...+-++...|+...|...+++.....|.-
T Consensus 194 ~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 194 SAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 11 233445556677788888888888887777654
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.016 Score=55.99 Aligned_cols=187 Identities=17% Similarity=0.087 Sum_probs=93.0
Q ss_pred ChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHH----------HHHhcC
Q 038622 35 QIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVH----------GFCKEG 104 (587)
Q Consensus 35 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~----------~~~~~~ 104 (587)
.++.|.++.++ .|.++.|..++......-.++.|...|-+.... +.......|.. .-.-.|
T Consensus 678 gledA~qfiEd------nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g 748 (1189)
T KOG2041|consen 678 GLEDAIQFIED------NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYG 748 (1189)
T ss_pred chHHHHHHHhc------CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhc
Confidence 34555554443 578889988887776666677777666555432 11111111111 122235
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCcccHHHHHHHHHhcCCHHHHHHHH
Q 038622 105 RIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEG-FDPDVFTYNSLISGLCKLGEVEEAVEIL 183 (587)
Q Consensus 105 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 183 (587)
++++|.+++-++-+++ ..+..+.+.|++-...++++.--... -..-...+..++..+.....|+.|.+.|
T Consensus 749 ~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY 819 (1189)
T KOG2041|consen 749 EFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYY 819 (1189)
T ss_pred chhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666665554431 23444455566655555544321100 0001234556666666666666666666
Q ss_pred HHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHH
Q 038622 184 NQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELF 253 (587)
Q Consensus 184 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 253 (587)
...... ...+.++.+..++++-+.+.+.+ +.+....-.+...+...|.-++|.+.|
T Consensus 820 ~~~~~~---------e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 820 SYCGDT---------ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred Hhccch---------HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHH
Confidence 543211 23345555555555544443332 224444455555566666666655554
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00016 Score=63.34 Aligned_cols=82 Identities=13% Similarity=0.107 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC----CchhhhhhhHHHHHHHHHH
Q 038622 492 IGEAVDFVIEMLERGFLPE----FSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS----DRETSMVRGFLKIRKFQDA 563 (587)
Q Consensus 492 ~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~A 563 (587)
+++|+..|+.+++. .|+ +.+++.+|.+|+..|++++|+..|+++++..|++ +.+..++.++...|+.++|
T Consensus 159 y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A 236 (263)
T PRK10803 159 QDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKA 236 (263)
T ss_pred HHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHH
Confidence 45555555554442 121 2344445555555555555555555544444432 2233344444444555555
Q ss_pred HHhcchhhhccC
Q 038622 564 LATFGDILDSRM 575 (587)
Q Consensus 564 ~~~~~~~~~~~~ 575 (587)
...|+++++..|
T Consensus 237 ~~~~~~vi~~yP 248 (263)
T PRK10803 237 KAVYQQVIKKYP 248 (263)
T ss_pred HHHHHHHHHHCc
Confidence 555554444443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.00 E-value=9e-06 Score=54.99 Aligned_cols=56 Identities=20% Similarity=0.332 Sum_probs=43.6
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 486 CNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 486 ~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
...|+ +++|++.++++++. .| +..++..++.+|.+.|++++|.+.+++++...|++
T Consensus 2 l~~~~-~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 2 LKQGD-YDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HHTTH-HHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred hhccC-HHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 35666 88888888888874 35 77888888888888888888888888888888875
|
... |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00045 Score=57.03 Aligned_cols=92 Identities=11% Similarity=0.068 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 038622 54 DERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLV--TNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTL 131 (587)
Q Consensus 54 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 131 (587)
....+..++..+...|++++|...|+++++....+ ....+..++.++.+.|++++|...++++++.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 34456667777777778888887777777653222 13466777777777788888888777777652 3345556666
Q ss_pred HHHHHhcCChHHHHH
Q 038622 132 VNGLCKVGHVKQALE 146 (587)
Q Consensus 132 ~~~~~~~~~~~~a~~ 146 (587)
+..+...|+...+..
T Consensus 113 g~~~~~~g~~~~a~~ 127 (172)
T PRK02603 113 AVIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHHcCChHhHhh
Confidence 667766666544443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=7.8e-05 Score=58.27 Aligned_cols=92 Identities=15% Similarity=-0.034 Sum_probs=81.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC-chhhhhhhHHH
Q 038622 479 KHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD-RETSMVRGFLK 556 (587)
Q Consensus 479 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~ 556 (587)
...+..+...|+ +++|..+|.-+.- +.| ++..+..|+.++...+++++|+..|..+...+++++ +.++.+.||+.
T Consensus 41 Y~~Ay~~y~~Gk-~~eA~~~F~~L~~--~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~ 117 (165)
T PRK15331 41 YAHAYEFYNQGR-LDEAETFFRFLCI--YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHHCCC-HHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH
Confidence 345556789999 9999999999887 456 889999999999999999999999999998887654 47999999999
Q ss_pred HHHHHHHHHhcchhhhc
Q 038622 557 IRKFQDALATFGDILDS 573 (587)
Q Consensus 557 ~~~~~~A~~~~~~~~~~ 573 (587)
.|+...|...|..+++.
T Consensus 118 l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 118 MRKAAKARQCFELVNER 134 (165)
T ss_pred hCCHHHHHHHHHHHHhC
Confidence 99999999999999884
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0025 Score=55.58 Aligned_cols=61 Identities=13% Similarity=0.085 Sum_probs=29.7
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHccCCHHHHHHHHHHHHHc
Q 038622 268 YNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVT---YNTLIDGFCKLKRIEEAEEIFDEMEIQ 329 (587)
Q Consensus 268 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~ 329 (587)
+...+..+...|++++|++.|+.+.... |.+... ...++.++.+.+++++|...+++..+.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3334444455555555555555555432 222211 133445555555555555555555544
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.017 Score=54.99 Aligned_cols=135 Identities=10% Similarity=0.028 Sum_probs=96.3
Q ss_pred CCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 038622 18 PDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLV 97 (587)
Q Consensus 18 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 97 (587)
.+...|..|+.---...+.+.+..++..++..- |.--..|...+..-.+.|..+.+..+|++.+.. +|.+...|....
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky-Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSKY-PLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL 120 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhhC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 355677777655555555566667777776542 333445677777777889999999999999875 577888887766
Q ss_pred HHHH-hcCCHHHHHHHHHHHHHC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 038622 98 HGFC-KEGRIEDALSFIQEMVSE-GF-NPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQE 154 (587)
Q Consensus 98 ~~~~-~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (587)
..+. ..|+.+.....|+.+... |. -.+...|...+..-..++++.....+|++.++.
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 6544 458888888888888764 21 123346788888778888999999999998874
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00014 Score=65.51 Aligned_cols=200 Identities=15% Similarity=0.047 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--C-CC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CC
Q 038622 335 SVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGL--K-PD--KFTYNSLLTYYCRAGDIKRAADIVQNMTSN----GCE-PD 404 (587)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~-~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~ 404 (587)
...|...+..|...+++++|...|.++..... . +. ...|.....++.+. ++++|+..++++... |-. .-
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~a 113 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQA 113 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 34677777888889999999999988865211 1 11 22455555555555 999999999887753 211 11
Q ss_pred cchHHHHHHHHHhc-CChHHHHHHHHHHHHc---CCCCC--hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--C---
Q 038622 405 IVTYGTLIGGLCKA-GRVEVASKLLRSIQMK---GIVLT--PQAYNPVIQALFRRKRTTEAMRLFREMMEKADP--P--- 473 (587)
Q Consensus 405 ~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~--- 473 (587)
...+..++..|... |++++|++.|+++.+. .-.+. ...+..++..+...|++++|+++|++....... .
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~ 193 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY 193 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence 34677788888888 8999999999988765 11111 245677888899999999999999998875221 1
Q ss_pred CH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHccCCHhHHHHHHHHHHh
Q 038622 474 DA-LTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFS------SFYMLAEGLVSLGKEETLVELIDMVMD 539 (587)
Q Consensus 474 ~~-~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~ 539 (587)
+. ..+...+-++...|+ .-.|...+++... ..|... ....|+.++ ..|+.+.....+...-.
T Consensus 194 ~~~~~~l~a~l~~L~~~D-~v~A~~~~~~~~~--~~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~av~~~d~ 262 (282)
T PF14938_consen 194 SAKEYFLKAILCHLAMGD-YVAARKALERYCS--QDPSFASSREYKFLEDLLEAY-EEGDVEAFTEAVAEYDS 262 (282)
T ss_dssp HHHHHHHHHHHHHHHTT--HHHHHHHHHHHGT--TSTTSTTSHHHHHHHHHHHHH-HTT-CCCHHHHCHHHTT
T ss_pred hHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHHHHHHcc
Confidence 11 122233335566777 8899999988876 456632 222333333 34555555555544333
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.014 Score=53.35 Aligned_cols=432 Identities=12% Similarity=0.069 Sum_probs=222.4
Q ss_pred CCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHH
Q 038622 17 KPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVL 96 (587)
Q Consensus 17 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 96 (587)
|-|...|-.|+..+..++.+++..+.++++..-- |-=+.+|...+.+-....++.....+|.+++... .+...|...
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pf-p~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW~lY 115 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPF-PIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLWMLY 115 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC-ccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHHHHH
Confidence 7788999999999999999999999999987542 4456688888888778889999999999998764 345566555
Q ss_pred HHHHHhcC-----C-HHHHHHHHHHHHH-CCCCCC-hhhHHHHHHHHH---------hcCChHHHHHHHHHHHhCCCCCC
Q 038622 97 VHGFCKEG-----R-IEDALSFIQEMVS-EGFNPD-QFTYNTLVNGLC---------KVGHVKQALEVMDMMLQEGFDPD 159 (587)
Q Consensus 97 ~~~~~~~~-----~-~~~a~~~~~~~~~-~~~~~~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~ 159 (587)
+.-..+.+ + -....+.|+-.+. .++.|- ...|+..+..+- .+.+.+..+..|.+++...+..-
T Consensus 116 l~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nl 195 (660)
T COG5107 116 LEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNL 195 (660)
T ss_pred HHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccH
Confidence 44333222 1 1122233333333 233333 334555444322 23345566667777776422110
Q ss_pred cccHHHH------HHHHH---hcC----CHHHHHHHHHHHHhC--CCC----CChhhHHH-----------HHHHHhccC
Q 038622 160 VFTYNSL------ISGLC---KLG----EVEEAVEILNQMILR--DCS----PNTITYNT-----------LISTLCKEN 209 (587)
Q Consensus 160 ~~~~~~l------~~~~~---~~g----~~~~a~~~~~~~~~~--~~~----~~~~~~~~-----------l~~~~~~~~ 209 (587)
...|... +.... -.| -+-.|...++++... |.. .+..+++. ++..-...|
T Consensus 196 eklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~ 275 (660)
T COG5107 196 EKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENG 275 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCC
Confidence 1122111 00000 011 133445555554321 111 11111111 111110000
Q ss_pred -----C-HH-HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChH
Q 038622 210 -----Q-VE-EATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLE 282 (587)
Q Consensus 210 -----~-~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 282 (587)
+ .. ..--++++.... +.-.+..|.-....+...+|-+.|+....... +..+.....+...|.-.++-+
T Consensus 276 l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~----~~spsL~~~lse~yel~nd~e 350 (660)
T COG5107 276 LKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGI----EMSPSLTMFLSEYYELVNDEE 350 (660)
T ss_pred cccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcc----cCCCchheeHHHHHhhcccHH
Confidence 0 00 000011111111 11122222222223334444445544433222 222222223333343334444
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHH---ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038622 283 EALKLLKEMESSGCARNVVTYNTLIDGFC---KLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMD 359 (587)
Q Consensus 283 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 359 (587)
.....|+.+... ...-...+.+-. ..|+++...+++-.-. ..-..+|...+....+..-.+.|..+|-
T Consensus 351 ~v~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~----~k~t~v~C~~~N~v~r~~Gl~aaR~~F~ 421 (660)
T COG5107 351 AVYGCFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELLLKRI----NKLTFVFCVHLNYVLRKRGLEAARKLFI 421 (660)
T ss_pred HHhhhHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHHHHHH----hhhhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 444444433221 000000000000 0122322222211111 1123345556666667777889999999
Q ss_pred HHHHcC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchH-HHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 038622 360 QMIMEG-LKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTY-GTLIGGLCKAGRVEVASKLLRSIQMKGIV 437 (587)
Q Consensus 360 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 437 (587)
++.+.+ ..++...+++++..++ .|++..|..+|+.-... .||...| ...+..+...++-..|..+|+....+ +.
T Consensus 422 k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~ 497 (660)
T COG5107 422 KLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVER-LE 497 (660)
T ss_pred HHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HH
Confidence 999887 5567777888887554 67889999999877664 3454444 44556677889999999999976654 22
Q ss_pred CC--hHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038622 438 LT--PQAYNPVIQALFRRKRTTEAMRLFREMMEK 469 (587)
Q Consensus 438 ~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (587)
.+ ...|..++.--..-|+...+..+=+++...
T Consensus 498 ~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 498 KTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 22 357888888888889999888888888874
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.02 Score=54.58 Aligned_cols=118 Identities=9% Similarity=0.089 Sum_probs=71.1
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHH-hcCCHHHHHHHH
Q 038622 105 RIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLC-KLGEVEEAVEIL 183 (587)
Q Consensus 105 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~ 183 (587)
+.+.+...+..++.. .|.--.-|...+..-.+.|..+.+.++|++.++. ++.+...|.....-+. ..|+.+.....|
T Consensus 60 ~~~~~r~~y~~fL~k-yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~f 137 (577)
T KOG1258|consen 60 DVDALREVYDIFLSK-YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLF 137 (577)
T ss_pred HHHHHHHHHHHHHhh-CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 345556666666654 1222334556666666777777777777777764 4555555555444333 356666777777
Q ss_pred HHHHhC-CCC-CChhhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 038622 184 NQMILR-DCS-PNTITYNTLISTLCKENQVEEATELARVLTSK 224 (587)
Q Consensus 184 ~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 224 (587)
+.+... |.. .+...|...+..-..++++.....+|+++++.
T Consensus 138 e~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 138 ERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 776654 111 13445666677767777777777777777764
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0011 Score=49.86 Aligned_cols=94 Identities=27% Similarity=0.246 Sum_probs=52.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CHHHHHHHH
Q 038622 408 YGTLIGGLCKAGRVEVASKLLRSIQMKGIVLT--PQAYNPVIQALFRRKRTTEAMRLFREMMEKADPP---DALTYKHVF 482 (587)
Q Consensus 408 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~ 482 (587)
...++.++-..|+.++|+.+|++....|+... ...+..++..+...|++++|..++++..... |. +......+.
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLA 82 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHH
Confidence 34455556666666666666666666554432 2355556666666666666666666666541 21 222222333
Q ss_pred HHHHhCCCCHHHHHHHHHHHH
Q 038622 483 RGLCNGGGPIGEAVDFVIEML 503 (587)
Q Consensus 483 ~~~~~~~~~~~~A~~~~~~~~ 503 (587)
-++...|+ .++|++.+-.++
T Consensus 83 l~L~~~gr-~~eAl~~~l~~l 102 (120)
T PF12688_consen 83 LALYNLGR-PKEALEWLLEAL 102 (120)
T ss_pred HHHHHCCC-HHHHHHHHHHHH
Confidence 34555666 666666665554
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.016 Score=52.89 Aligned_cols=459 Identities=11% Similarity=0.067 Sum_probs=221.8
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 038622 41 LMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEG 120 (587)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 120 (587)
++=+++... |.|..+|..++.-+-.+|.+++..++++++..- .|.-+.+|...+.+-...+++.....+|.+.+..
T Consensus 30 rLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k- 105 (660)
T COG5107 30 RLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK- 105 (660)
T ss_pred HHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh-
Confidence 444444433 788999999999999999999999999999764 4667788888888888889999999999999886
Q ss_pred CCCChhhHHHHHHHHHhcCCh------HHHHHHHHHHHh-CCCCCCc-ccHHHHHH---HHHhcCCH------HHHHHHH
Q 038622 121 FNPDQFTYNTLVNGLCKVGHV------KQALEVMDMMLQ-EGFDPDV-FTYNSLIS---GLCKLGEV------EEAVEIL 183 (587)
Q Consensus 121 ~~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~-~~~~~~~-~~~~~l~~---~~~~~g~~------~~a~~~~ 183 (587)
..+...|...+....+.... ....+.|+-... .++.|.. ..|...+. ..-..|.+ +.....|
T Consensus 106 -~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y 184 (660)
T COG5107 106 -SLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGY 184 (660)
T ss_pred -hccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 34566677666654444321 122334444443 2344432 23333322 22223333 3344445
Q ss_pred HHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHc--CC
Q 038622 184 NQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTK--GC 261 (587)
Q Consensus 184 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~ 261 (587)
.+++..-+..-...|. +++.-+.-+.++..+.+.-+ ...-+..|...++++... |.
T Consensus 185 ~ral~tP~~nleklW~----------dy~~fE~e~N~~TarKfvge------------~sp~ym~ar~~yqe~~nlt~Gl 242 (660)
T COG5107 185 MRALQTPMGNLEKLWK----------DYENFELELNKITARKFVGE------------TSPIYMSARQRYQEIQNLTRGL 242 (660)
T ss_pred HHHHcCccccHHHHHH----------HHHHHHHHHHHHHHHHHhcc------------cCHHHHHHHHHHHHHHHHhccc
Confidence 5544321110001111 11111111111110000000 001122333333333221 10
Q ss_pred ----CCCHHh-----------HHHHHHHHHcc------CChHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 038622 262 ----QPDEFT-----------YNMLIDSLCSR------GMLEEA-LKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEA 319 (587)
Q Consensus 262 ----~~~~~~-----------~~~l~~~~~~~------~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 319 (587)
+.+..+ |...+..-... +...+- --+++++... ++.....|..-..-+...++-+.|
T Consensus 243 ~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~a 321 (660)
T COG5107 243 SVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKA 321 (660)
T ss_pred cccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHH
Confidence 111111 22222211111 111111 1112222221 123334444444444555666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh---cCCHHHHHHHHHHH
Q 038622 320 EEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCR---AGDIKRAADIVQNM 396 (587)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~ 396 (587)
+....... +..+.....+...|.-..+-+.....|+++.+. ...-...+..-.. .|+++.-.+++-.-
T Consensus 322 l~tv~rg~----~~spsL~~~lse~yel~nd~e~v~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr 392 (660)
T COG5107 322 LKTVERGI----EMSPSLTMFLSEYYELVNDEEAVYGCFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELLLKR 392 (660)
T ss_pred HHHHHhcc----cCCCchheeHHHHHhhcccHHHHhhhHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHHHHH
Confidence 66554432 222222223344444445555555555554431 0000000000000 12222111111111
Q ss_pred HHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH
Q 038622 397 TSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIV-LTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDA 475 (587)
Q Consensus 397 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 475 (587)
+. .=...|...+....+..-.+.|.++|-++.+.++. ++...++.++. +...|++.-|.++|+--+.. .+.+.
T Consensus 393 ~~----k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E-~~~~~d~~ta~~ifelGl~~-f~d~~ 466 (660)
T COG5107 393 IN----KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIE-YYATGDRATAYNIFELGLLK-FPDST 466 (660)
T ss_pred Hh----hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHH-HHhcCCcchHHHHHHHHHHh-CCCch
Confidence 11 01233445555556666777777888777776633 22334444444 33456777777777776664 23344
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 476 LTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPE--FSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 476 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
......+..+...++ -..|..+|+..+++ +..+ ...|..++.--..-|+...+..+-+++.+.-|..
T Consensus 467 ~y~~kyl~fLi~ind-e~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 467 LYKEKYLLFLIRIND-EENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHHHHHHHhCc-HHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 444445555666666 67777788776653 2222 4566666666677777777777777777766654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0025 Score=54.12 Aligned_cols=48 Identities=15% Similarity=0.126 Sum_probs=32.8
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHhcCCCCC----chhhhhhhHHHHHHHHHH
Q 038622 516 MLAEGLVSLGKEETLVELIDMVMDKAKFSD----RETSMVRGFLKIRKFQDA 563 (587)
Q Consensus 516 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~A 563 (587)
.++..|.+.|++..|+..++.+++.-|... ....++.+|.+.|....|
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 366778888888888888888888777753 356666777777766643
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00048 Score=63.57 Aligned_cols=84 Identities=13% Similarity=-0.075 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHH
Q 038622 457 TEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELID 535 (587)
Q Consensus 457 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 535 (587)
.+|.++.+++++.+ +.|+.....++.+....++ ++.|...|+++.. +.| ...++...++.+.-.|+.++|.+.++
T Consensus 321 ~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~-~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 321 QKALELLDYVSDIT-TVDGKILAIMGLITGLSGQ-AKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcc-hhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444444444443 4444444444444444444 4555555555444 234 24444444444444555555555555
Q ss_pred HHHhcCCCC
Q 038622 536 MVMDKAKFS 544 (587)
Q Consensus 536 ~~~~~~~~~ 544 (587)
++++.+|..
T Consensus 397 ~alrLsP~~ 405 (458)
T PRK11906 397 KSLQLEPRR 405 (458)
T ss_pred HHhccCchh
Confidence 555444443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.87 E-value=6.1e-05 Score=51.72 Aligned_cols=60 Identities=18% Similarity=0.176 Sum_probs=47.5
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 483 RGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 483 ~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
..+...++ +++|.+.++++++. .| ++..+...+.++.+.|++++|.+.++++++..|++.
T Consensus 3 ~~~~~~~~-~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 3 QIYLQQED-YEEALEVLERALEL--DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HHHHhCCC-HHHHHHHHHHHHHh--CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 34566777 88888888888874 45 677888888888888888888888888888888654
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.7e-05 Score=53.60 Aligned_cols=61 Identities=13% Similarity=0.316 Sum_probs=53.2
Q ss_pred HHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHHHHHHHHHhcchhhhccCchhhhh
Q 038622 521 LVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFLKIRKFQDALATFGDILDSRMPRKTFR 581 (587)
Q Consensus 521 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 581 (587)
+.+.|++++|++.++++++..|.+ +.+..++.+|.+.|++++|...++++....+....+.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 357899999999999999999987 5688999999999999999999999999998755443
|
... |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00024 Score=63.72 Aligned_cols=96 Identities=11% Similarity=0.167 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHH
Q 038622 477 TYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFL 555 (587)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~ 555 (587)
+++++..++.+.+. +.+|+....+.++.+ +++..+++.-+.+|...|+++.|+..|+++++..|.+ ++...++.+--
T Consensus 259 ~~lNlA~c~lKl~~-~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 259 CHLNLAACYLKLKE-YKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HhhHHHHHHHhhhh-HHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 35566666777777 888888888888753 4478888888888888888888888888888888877 34555665544
Q ss_pred HHHHHHHH-HHhcchhhhcc
Q 038622 556 KIRKFQDA-LATFGDILDSR 574 (587)
Q Consensus 556 ~~~~~~~A-~~~~~~~~~~~ 574 (587)
+...+.+. .+.|.++....
T Consensus 337 k~~~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAKL 356 (397)
T ss_pred HHHHHHHHHHHHHHHHhhcc
Confidence 44444433 55565555443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00064 Score=57.99 Aligned_cols=103 Identities=16% Similarity=0.189 Sum_probs=80.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCCC-CHHHHHHHH
Q 038622 443 YNPVIQALFRRKRTTEAMRLFREMMEKAD--PPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLER-GFLP-EFSSFYMLA 518 (587)
Q Consensus 443 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~-~~~p-~~~~~~~l~ 518 (587)
....+..+...|++..|...|...++... .-.+..+.+++.+++..|+ +++|...|..+.+. +-.| .++++..|+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~-y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGD-YEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhccc-chHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 34445556677889999999999998621 1123345568889999999 99999999998864 2223 488999999
Q ss_pred HHHHccCCHhHHHHHHHHHHhcCCCCCc
Q 038622 519 EGLVSLGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 519 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
.+..+.|+.++|...|+++++.-|..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 9999999999999999999999998754
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.019 Score=48.52 Aligned_cols=131 Identities=14% Similarity=0.107 Sum_probs=82.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcC-----CCCChHhHHHHH
Q 038622 373 YNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKG-----IVLTPQAYNPVI 447 (587)
Q Consensus 373 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~ 447 (587)
.+.++.++.-.+.+.-....+.+.++.+.+.++.....+++.-.+.||.+.|..+|+++.+.. +...........
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 445566666667777777777777776555566666777777777777777777777665442 221222233344
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 038622 448 QALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLER 505 (587)
Q Consensus 448 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 505 (587)
..+..++++.+|.+.+.+.+..+ +.++...+.-+-++.-.|+ ..+|++.++.+++.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~-l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGK-LKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHH-HHHHHHHHHHHhcc
Confidence 45556677777777777777664 4555555544444555666 77777777777763
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.75 E-value=4.4e-05 Score=43.30 Aligned_cols=33 Identities=42% Similarity=0.775 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHhhccCCCCCC
Q 038622 22 TFNILIKALCKAHQIRPAILMMEEMPGYGLAPD 54 (587)
Q Consensus 22 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 54 (587)
+|+.++++|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888887776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0054 Score=52.09 Aligned_cols=61 Identities=18% Similarity=0.104 Sum_probs=26.1
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 038622 269 NMLIDSLCSRGMLEEALKLLKEMESSG--CARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQ 329 (587)
Q Consensus 269 ~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 329 (587)
...+..+...|++.+|+..|+.+.... .+....+...++.++.+.|+++.|...+++....
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444445555555555555554431 0111223334444555555555555555554443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.006 Score=56.62 Aligned_cols=132 Identities=14% Similarity=0.019 Sum_probs=86.3
Q ss_pred CChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHH
Q 038622 419 GRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDF 498 (587)
Q Consensus 419 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~ 498 (587)
.+..+|.+..+++.+.+.. |+.+...++.+....++++.|...|+++...+ |.....+...+..+...|+ .++|.+.
T Consensus 318 ~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~-~~~a~~~ 394 (458)
T PRK11906 318 LAAQKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEK-IEEARIC 394 (458)
T ss_pred HHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCC-HHHHHHH
Confidence 3456667777777776544 67777778887788888888888888888864 5556667777777778888 8888888
Q ss_pred HHHHHHcCCCCC---HHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCchhhhhhhHHHHHHH
Q 038622 499 VIEMLERGFLPE---FSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDRETSMVRGFLKIRKF 560 (587)
Q Consensus 499 ~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (587)
++++++ ++|. ........+.|+..+ .++|+++|-+-.+ ++....++...++.+++
T Consensus 395 i~~alr--LsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 452 (458)
T PRK11906 395 IDKSLQ--LEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYKETE----SESHRVIIDNILKLKQL 452 (458)
T ss_pred HHHHhc--cCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhhccc----cccchhhHHHHHHHHHH
Confidence 888887 4562 222333334566554 6778877765333 23333444444444443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0015 Score=50.09 Aligned_cols=93 Identities=13% Similarity=0.045 Sum_probs=49.5
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc----hhhhhhhHHHH
Q 038622 484 GLCNGGGPIGEAVDFVIEMLERG-FLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR----ETSMVRGFLKI 557 (587)
Q Consensus 484 ~~~~~~~~~~~A~~~~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 557 (587)
...+.|+ +++|++.|+.+...- ..| ...+-..|+.+|++.|++++|+..+++.++..|.++- ++..+.+++..
T Consensus 19 ~~l~~~~-Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 19 EALQKGN-YEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHHhCC-HHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 3444555 556655555555431 111 3444455555566666666666666666665555421 23333333333
Q ss_pred HH---------------HHHHHHhcchhhhccCch
Q 038622 558 RK---------------FQDALATFGDILDSRMPR 577 (587)
Q Consensus 558 ~~---------------~~~A~~~~~~~~~~~~~~ 577 (587)
.. ..+|...|++++...|..
T Consensus 98 ~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 98 DEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred hhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence 33 667777777777776544
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.68 E-value=9.1e-05 Score=50.85 Aligned_cols=66 Identities=12% Similarity=0.168 Sum_probs=58.4
Q ss_pred HHHHHHccCCHhHHHHHHHHHHhcCCCCC-chhhhhhhHHHHHHHHHHHHhcchhhhccCchhhhhh
Q 038622 517 LAEGLVSLGKEETLVELIDMVMDKAKFSD-RETSMVRGFLKIRKFQDALATFGDILDSRMPRKTFRS 582 (587)
Q Consensus 517 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 582 (587)
|..+|.+.+++++|++.+++++..+|.+. .+...+.++.+.|++.+|...|+++++..|.+.+...
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 35678999999999999999999999874 4888999999999999999999999999987766543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00047 Score=58.76 Aligned_cols=99 Identities=17% Similarity=0.209 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC----Cchhh
Q 038622 477 TYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP---EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS----DRETS 549 (587)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~ 549 (587)
.|+.-+ .+...|+ +.+|...|...++.. +. .+.++++|+.+++.+|++++|...|..+.+..|+. |....
T Consensus 144 ~Y~~A~-~~~ksgd-y~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAAL-DLYKSGD-YAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHH-HHHHcCC-HHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 444433 5678899 999999999999853 22 47889999999999999999999999999988875 45788
Q ss_pred hhhhHHHHHHHHHHHHhcchhhhccCchh
Q 038622 550 MVRGFLKIRKFQDALATFGDILDSRMPRK 578 (587)
Q Consensus 550 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 578 (587)
++.+....|+-++|+..|.++...+|..+
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 99999999999999999999999887654
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.64 E-value=6.8e-05 Score=42.13 Aligned_cols=33 Identities=33% Similarity=0.555 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHcCChhhHHHHHHhhccCCCCC
Q 038622 21 STFNILIKALCKAHQIRPAILMMEEMPGYGLAP 53 (587)
Q Consensus 21 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 53 (587)
.+|+.++.+|.+.|+++.|..+|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777655
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.013 Score=53.57 Aligned_cols=166 Identities=15% Similarity=0.077 Sum_probs=83.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC---CCCCcchHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 038622 376 LLTYYCRAGDIKRAADIVQNMTSNG---CEPDIVTYGTLIGGLCK---AGRVEVASKLLRSIQMKGIVLTPQAYNPVIQA 449 (587)
Q Consensus 376 l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 449 (587)
++-+|....+++.-+++.+.+.... +.....+-...+.++.+ .|+.++|+.++..+......++++++..+++.
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3334455555555555555444320 00011122233334444 45555555555554333333444555444444
Q ss_pred HHh---------cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHH---HHHHH----HHHHHcCC-CCCHH
Q 038622 450 LFR---------RKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGE---AVDFV----IEMLERGF-LPEFS 512 (587)
Q Consensus 450 ~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---A~~~~----~~~~~~~~-~p~~~ 512 (587)
|-. ....++|+..|.+.-+. .|+...-.+++..+...|.+.+. ..++- ..+.+.|. .+...
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~d 304 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQD 304 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccccc
Confidence 321 12377888888888774 34444333444444445542222 22222 11223332 23333
Q ss_pred HH--HHHHHHHHccCCHhHHHHHHHHHHhcCCC
Q 038622 513 SF--YMLAEGLVSLGKEETLVELIDMVMDKAKF 543 (587)
Q Consensus 513 ~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 543 (587)
.| ..++.+..-.|++++|.+.++++.+..|.
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 33 56778888899999999999999987643
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0021 Score=57.90 Aligned_cols=100 Identities=14% Similarity=0.053 Sum_probs=79.2
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 038622 441 QAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAE 519 (587)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 519 (587)
..+.+++.++.+.+++.+|+....+++..+ +++...+..-+.++...|+ ++.|+..|+++++ +.| |..+-..|..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e-~~~A~~df~ka~k--~~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGE-YDLARDDFQKALK--LEPSNKAARAELIK 333 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhcc-HHHHHHHHHHHHH--hCCCcHHHHHHHHH
Confidence 356788889999999999999999999986 8888888889999999999 9999999999998 567 5555566666
Q ss_pred HHHccCCHh-HHHHHHHHHHhcCCCC
Q 038622 520 GLVSLGKEE-TLVELIDMVMDKAKFS 544 (587)
Q Consensus 520 ~~~~~g~~~-~A~~~~~~~~~~~~~~ 544 (587)
+-.+..++. ...++|.+|.......
T Consensus 334 l~~k~~~~~~kekk~y~~mF~k~~~~ 359 (397)
T KOG0543|consen 334 LKQKIREYEEKEKKMYANMFAKLAEE 359 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccc
Confidence 655554444 4478888888766543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.033 Score=47.10 Aligned_cols=132 Identities=14% Similarity=0.085 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCcchHHHH
Q 038622 337 TYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSN-----GCEPDIVTYGTL 411 (587)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~l 411 (587)
..+.++..+.-.|.+.-....+.+.++...+.++.....++....+.||.+.|...+++..+. +.+-+.......
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 334555666666777777778888777655556777777778788888888888888766543 222222333444
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038622 412 IGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEK 469 (587)
Q Consensus 412 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (587)
...|.-++++.+|...+.++...+.. ++...|.-+-+..-.|+..+|++.++.+...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 55666777888888888888776444 5566666666677778888888888888875
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00018 Score=40.73 Aligned_cols=33 Identities=58% Similarity=1.107 Sum_probs=16.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 038622 127 TYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPD 159 (587)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 159 (587)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 344555555555555555555555555444443
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.051 Score=48.09 Aligned_cols=226 Identities=20% Similarity=0.141 Sum_probs=157.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHhhHHHHHHHHHhcCCHHHHH
Q 038622 313 LKRIEEAEEIFDEMEIQGISR-NSVTYNTLIDGLCKSRRVEDAAQLMDQMIME-GLKPDKFTYNSLLTYYCRAGDIKRAA 390 (587)
Q Consensus 313 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~ 390 (587)
.+....+...+.......... ...........+...+++..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 356666666666666543211 2466667777788888898888888887752 12345556667777778888888999
Q ss_pred HHHHHHHHCCCCCCcchHHHHHH-HHHhcCChHHHHHHHHHHHHcCC--CCChHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038622 391 DIVQNMTSNGCEPDIVTYGTLIG-GLCKAGRVEVASKLLRSIQMKGI--VLTPQAYNPVIQALFRRKRTTEAMRLFREMM 467 (587)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 467 (587)
..+.........+ ......... .+...|+++.+...+.+...... ......+......+...++++.|...+.++.
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 9998888753332 222333333 67888999999999988865322 1123444455555677888999999999988
Q ss_pred hcCCCC-CHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCC
Q 038622 468 EKADPP-DALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPE-FSSFYMLAEGLVSLGKEETLVELIDMVMDKAKF 543 (587)
Q Consensus 468 ~~~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 543 (587)
... +. ....+..+...+...+. ++.|...+..+... .|+ ...+..++..+...|..+++...+.+.....+.
T Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 195 KLN-PDDDAEALLNLGLLYLKLGK-YEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hhC-cccchHHHHHhhHHHHHccc-HHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 863 34 35667777777778887 88999999988873 453 566666777777777789999999998888876
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0018 Score=60.46 Aligned_cols=123 Identities=19% Similarity=0.255 Sum_probs=87.5
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcc
Q 038622 84 HGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSE--GFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVF 161 (587)
Q Consensus 84 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 161 (587)
.+.+.+......+++......+.+.+..++-+.... ....-..+...+++.|...|..++++.++..=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 334556666666777777777777888887777654 112223456688888888888888888888888888888888
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHh
Q 038622 162 TYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLC 206 (587)
Q Consensus 162 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 206 (587)
+++.+++.+.+.|++..|.++...|...+...++.+...-+.++.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 888888888888888888888888877755545554443333333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0061 Score=46.78 Aligned_cols=60 Identities=17% Similarity=0.164 Sum_probs=31.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCC--CChHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038622 410 TLIGGLCKAGRVEVASKLLRSIQMKGIV--LTPQAYNPVIQALFRRKRTTEAMRLFREMMEK 469 (587)
Q Consensus 410 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (587)
.-+....+.|++++|.+.|+.+...-+. -...+-..++.+|...+++++|+..+++.++.
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3344445556666666666655554111 12244455555666666666666666666554
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0034 Score=58.60 Aligned_cols=122 Identities=17% Similarity=0.194 Sum_probs=82.4
Q ss_pred CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHH
Q 038622 261 CQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESS--GCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTY 338 (587)
Q Consensus 261 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 338 (587)
.+.+......++.......+.+.+..++.+.... ....-+.+...+++.|...|..+.++.++..=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3555666666677666667777777777777654 11122334457778888888888888888777777888888888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 038622 339 NTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCR 382 (587)
Q Consensus 339 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 382 (587)
+.++..+.+.|++..|.++...|.......+..++...+.+|.+
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 88888888888888888887777765444455554444444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00025 Score=39.74 Aligned_cols=31 Identities=35% Similarity=0.604 Sum_probs=15.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 038622 127 TYNTLVNGLCKVGHVKQALEVMDMMLQEGFD 157 (587)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 157 (587)
+|+.++.++++.|+++.|.++|+.|.+.|+.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444454444444444443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.052 Score=52.15 Aligned_cols=86 Identities=20% Similarity=0.258 Sum_probs=44.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhh---------
Q 038622 302 TYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFT--------- 372 (587)
Q Consensus 302 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--------- 372 (587)
+...+..-+.+...+.-|.++|..+-.. ..+...+...++|++|..+-++..+ ..||...
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAEN 817 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhh
Confidence 4444444455555666666666665321 2345556667777777766665443 1223211
Q ss_pred --HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038622 373 --YNSLLTYYCRAGDIKRAADIVQNMTS 398 (587)
Q Consensus 373 --~~~l~~~~~~~~~~~~A~~~~~~~~~ 398 (587)
+...-++|.+.|+-.+|..+++++..
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 12222345555555666666655543
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0053 Score=49.32 Aligned_cols=95 Identities=18% Similarity=0.177 Sum_probs=77.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCH-----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 038622 447 IQALFRRKRTTEAMRLFREMMEKADPPDA-----LTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEG 520 (587)
Q Consensus 447 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 520 (587)
+.-++..|++++|..-|..+++.- |+.. ..|..-+.++.+.+. ++.|+.-..++++. .| ...++...+.+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k-~e~aI~dcsKaiel--~pty~kAl~RRAea 177 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRK-WESAIEDCSKAIEL--NPTYEKALERRAEA 177 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhh-HHHHHHHHHhhHhc--CchhHHHHHHHHHH
Confidence 456788999999999999999863 4432 344455567788888 99999999999984 46 57788888999
Q ss_pred HHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 521 LVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 521 ~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
|.++.++++|+.-|+++++.+|...
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchH
Confidence 9999999999999999999999863
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.018 Score=51.08 Aligned_cols=57 Identities=7% Similarity=-0.089 Sum_probs=25.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 038622 376 LLTYYCRAGDIKRAADIVQNMTSNG-----CEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQ 432 (587)
Q Consensus 376 l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 432 (587)
+..++...+.++++.+.|+.+.+.. ......++..|+..|.+..|+++|.-+..++.
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~ 189 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAA 189 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHH
Confidence 3444444445555555555443320 01112344445555555555555554444433
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00025 Score=38.75 Aligned_cols=30 Identities=37% Similarity=0.586 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHcCChhhHHHHHHhhccCC
Q 038622 21 STFNILIKALCKAHQIRPAILMMEEMPGYG 50 (587)
Q Consensus 21 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 50 (587)
++|+.++++|.+.|++++|.++|++|.+.|
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 367778888888888888888888777654
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00049 Score=63.42 Aligned_cols=67 Identities=13% Similarity=0.088 Sum_probs=59.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC-H---HHHHHHHHHHHccCCHhHHHHHHHHHHhcC
Q 038622 472 PPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPE-F---SSFYMLAEGLVSLGKEETLVELIDMVMDKA 541 (587)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 541 (587)
|.+...+..++.++...|+ +++|+..|+++++ +.|+ . .++++++.+|..+|++++|+..++++++..
T Consensus 72 P~~a~a~~NLG~AL~~lGr-yeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGR-VKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 6678889999999999999 9999999999998 5675 4 358999999999999999999999999973
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0013 Score=45.80 Aligned_cols=62 Identities=23% Similarity=0.290 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCCC---C-HHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 038622 477 TYKHVFRGLCNGGGPIGEAVDFVIEMLER--GFLP---E-FSSFYMLAEGLVSLGKEETLVELIDMVMD 539 (587)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~--~~~p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 539 (587)
++..++..+...|+ +++|+++++++++. ...+ + ..++..++.++...|++++|+++++++++
T Consensus 7 ~~~~la~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGR-YDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45556666666666 67777666666632 0111 1 34556677777777777777777777665
|
... |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.11 Score=45.89 Aligned_cols=225 Identities=20% Similarity=0.111 Sum_probs=145.9
Q ss_pred cCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038622 278 RGMLEEALKLLKEMESSGCAR-NVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQ-GISRNSVTYNTLIDGLCKSRRVEDAA 355 (587)
Q Consensus 278 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~ 355 (587)
.+....+...+.......... ...........+...+++..+...+...... ..+.....+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 355566666666666543111 2456667777778888888888888777642 22455566667777777778888888
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHH-HHHhcCCHHHHHHHHHHHHHCCC--CCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 038622 356 QLMDQMIMEGLKPDKFTYNSLLT-YYCRAGDIKRAADIVQNMTSNGC--EPDIVTYGTLIGGLCKAGRVEVASKLLRSIQ 432 (587)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 432 (587)
..+.........+ ......... .+...|+++.|...+........ ......+......+...++.+.+...+.+..
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 8888887643332 122222333 67788888888888888755321 1123334444444566788888888888888
Q ss_pred HcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 038622 433 MKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLER 505 (587)
Q Consensus 433 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 505 (587)
..........+..+...+...++++.|...+..+.... +.....+......+...+. ++++...+.+....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD-PDNAEALYNLALLLLELGR-YEEALEALEKALEL 265 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCC-HHHHHHHHHHHHHh
Confidence 75222135667778888888888888888888888752 2224444455555555555 88888888888863
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.14 Score=47.02 Aligned_cols=26 Identities=8% Similarity=0.079 Sum_probs=16.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038622 444 NPVIQALFRRKRTTEAMRLFREMMEK 469 (587)
Q Consensus 444 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (587)
..++.+..-.|++++|.+.++++.+.
T Consensus 309 ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 309 ATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 34555555666666666666666654
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.093 Score=44.79 Aligned_cols=62 Identities=18% Similarity=0.139 Sum_probs=42.8
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 481 VFRGLCNGGGPIGEAVDFVIEMLERGFLP---EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 481 l~~~~~~~~~~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
++..|.+.|. +-.|+.-++++++. .+. ..+++..+..+|...|-.++|.+.-+-+-.-.|++
T Consensus 173 IaryY~kr~~-~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 173 IARYYLKRGA-YVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHhcC-hHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 4556777777 88888888888874 222 25566777788888888888877766554444443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0072 Score=44.77 Aligned_cols=94 Identities=19% Similarity=0.130 Sum_probs=72.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-C---HHHHHHHHHHHH
Q 038622 447 IQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-E---FSSFYMLAEGLV 522 (587)
Q Consensus 447 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~---~~~~~~l~~~~~ 522 (587)
+-++...|+.+.|++.|.+++.. .|.....|+.-..++.-+|+ .++|.+-++++++.. .| . ..++..-+.+|.
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~-~e~ALdDLn~AleLa-g~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGD-DEEALDDLNKALELA-GDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCC-hHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHHH
Confidence 44567788888888888888886 36677888888888888888 888888888888742 22 2 345666777888
Q ss_pred ccCCHhHHHHHHHHHHhcCCC
Q 038622 523 SLGKEETLVELIDMVMDKAKF 543 (587)
Q Consensus 523 ~~g~~~~A~~~~~~~~~~~~~ 543 (587)
..|+-+.|+.-|+.+.+.+..
T Consensus 127 l~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HhCchHHHHHhHHHHHHhCCH
Confidence 888888999888888877654
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0019 Score=59.75 Aligned_cols=65 Identities=18% Similarity=0.168 Sum_probs=57.1
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 038622 439 TPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDA---LTYKHVFRGLCNGGGPIGEAVDFVIEMLER 505 (587)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 505 (587)
+...++.++.+|...|++++|+..|+++++.+ |.+. ..|.+++.+|...|+ .++|++.++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd~aeA~~A~yNLAcaya~LGr-~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN-PNPDEAQAAYYNKACCHAYREE-GKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh
Confidence 56889999999999999999999999999964 3333 358899999999999 99999999999984
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0005 Score=41.20 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 512 SSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 512 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
.++..++..|...|++++|+++++++++..|++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~ 35 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDP 35 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 4567788888888888888888888888888763
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.077 Score=44.51 Aligned_cols=207 Identities=14% Similarity=0.117 Sum_probs=114.1
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038622 266 FTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGL 345 (587)
Q Consensus 266 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 345 (587)
..|.....+|....++++|...+.++.+-. ..+...| .. ...++.|.-+.+++... +.-...+.....+|
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~y-Ennrslf-hA------AKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSLF-HA------AKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccHH-HH------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 345555666777777888777776665321 1121111 11 12344454455554432 22334455556667
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC--CCCcchHHHHHHHHHhcCC
Q 038622 346 CKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSN---GC--EPDIVTYGTLIGGLCKAGR 420 (587)
Q Consensus 346 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~~~ 420 (587)
..+|..+.|-..++++-+. ....+++.|+++|++.... +- +-..+.+....+.+++..+
T Consensus 102 ~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred HHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 7777777777666665431 2233555566666554431 00 0012345556667778888
Q ss_pred hHHHHHHHHHHHHc----CCCCCh-HhHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHhCCCCH
Q 038622 421 VEVASKLLRSIQMK----GIVLTP-QAYNPVIQALFRRKRTTEAMRLFREMMEKA---DPPDALTYKHVFRGLCNGGGPI 492 (587)
Q Consensus 421 ~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~ 492 (587)
+++|...+.+-... .--++. ..+...+-.+....++..|.++++.--+.+ -+.+..+...++.+| ..|+ .
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD-~ 243 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGD-I 243 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCC-H
Confidence 88877666543221 111122 345555666777789999999998855431 244566777777664 5666 6
Q ss_pred HHHHHHHH
Q 038622 493 GEAVDFVI 500 (587)
Q Consensus 493 ~~A~~~~~ 500 (587)
+++.+++.
T Consensus 244 E~~~kvl~ 251 (308)
T KOG1585|consen 244 EEIKKVLS 251 (308)
T ss_pred HHHHHHHc
Confidence 77655443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.023 Score=45.39 Aligned_cols=68 Identities=25% Similarity=0.361 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----HcCCCCCHHH
Q 038622 444 NPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEML-----ERGFLPEFSS 513 (587)
Q Consensus 444 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~-----~~~~~p~~~~ 513 (587)
..++..+...|++++|...+.+++..+ |-+...+..++.++...|+ ..+|.+.|+++. +.|+.|++.+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~-~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGR-RAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcC-HHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344445555555555555555555543 4455555555555555555 555555555543 2355554443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.059 Score=46.82 Aligned_cols=149 Identities=15% Similarity=0.140 Sum_probs=82.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 038622 58 FTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCK 137 (587)
Q Consensus 58 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 137 (587)
-..-.......|++.+|...|..+.... +.+..+...++.+|...|+.+.|..++..+..............-+..+.+
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~q 215 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQ 215 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence 3344455667777888888777777765 445666667777777888888877777766543111111111122333444
Q ss_pred cCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHhccC
Q 038622 138 VGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDC-SPNTITYNTLISTLCKEN 209 (587)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 209 (587)
.....+...+-+..-.. +.|...-..+...+...|+.+.|.+.+-.++.++. ..+......++..+.-.|
T Consensus 216 aa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 216 AAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 44444444444444332 22455556666667777777777766666554421 123344445555554444
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.013 Score=56.71 Aligned_cols=116 Identities=17% Similarity=0.169 Sum_probs=63.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHc--CCCC-CHHHHHHHHHHHHccCCHhH
Q 038622 454 KRTTEAMRLFREMMEKADPPDALTYK-HVFRGLCNGGGPIGEAVDFVIEMLER--GFLP-EFSSFYMLAEGLVSLGKEET 529 (587)
Q Consensus 454 g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~A~~~~~~~~~~--~~~p-~~~~~~~l~~~~~~~g~~~~ 529 (587)
...+.|.+++..+.++ .|+...|. .-++.+...|+ .++|++.+++++.. ..+. ..-.++-+++++.-.+++++
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~-~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGN-LEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcC-HHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 4556666666666664 34444333 33344445555 77777777665531 1111 23344566666666777777
Q ss_pred HHHHHHHHHhcCCCCCc--hhhhhhhHHHHHHH-------HHHHHhcchhhh
Q 038622 530 LVELIDMVMDKAKFSDR--ETSMVRGFLKIRKF-------QDALATFGDILD 572 (587)
Q Consensus 530 A~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-------~~A~~~~~~~~~ 572 (587)
|...+.++.+.+..+.. .+..+.++...|+. ++|...|.++-.
T Consensus 324 A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 77777776665555433 24444556666666 555555555443
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0082 Score=43.46 Aligned_cols=76 Identities=17% Similarity=0.314 Sum_probs=41.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCChhhHHHH
Q 038622 61 LMQGLIEEGNLDGALRIREQMVEHGC-LVTNVTVNVLVHGFCKEG--------RIEDALSFIQEMVSEGFNPDQFTYNTL 131 (587)
Q Consensus 61 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l 131 (587)
.+..+...|++...-.+|+.+.+.|+ -|+..+|+.++.+..+.. +.-..+.+|+.++..++.|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444455666666666666666655 455555655555544332 233445556666666666666666665
Q ss_pred HHHHH
Q 038622 132 VNGLC 136 (587)
Q Consensus 132 ~~~~~ 136 (587)
+..+.
T Consensus 111 l~~Ll 115 (120)
T PF08579_consen 111 LGSLL 115 (120)
T ss_pred HHHHH
Confidence 55543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0088 Score=52.32 Aligned_cols=158 Identities=13% Similarity=0.032 Sum_probs=109.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCChHhH--HHHHHHHHhcCCH
Q 038622 380 YCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMK-GIVLTPQAY--NPVIQALFRRKRT 456 (587)
Q Consensus 380 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~--~~l~~~~~~~g~~ 456 (587)
....|...+|...|+++++. .+.|...+...-.+|...|+.+.-...++++... +....-..| ..++.++...|-+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 34567888888888888875 3336666666677888888888888888888765 221111222 2345556678899
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHccCCHhHHHH
Q 038622 457 TEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP----EFSSFYMLAEGLVSLGKEETLVE 532 (587)
Q Consensus 457 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~ 532 (587)
++|.+.-+++++.+ +.|..........+...|+ ..++.++..+--.. .+. -...|...+-.+...+.++.|++
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r-~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGR-HKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcch-hhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 99999988888865 5666666677777777888 88888887765421 121 13455667777788889999999
Q ss_pred HHHHHHhcC
Q 038622 533 LIDMVMDKA 541 (587)
Q Consensus 533 ~~~~~~~~~ 541 (587)
+|++-+-..
T Consensus 269 IyD~ei~k~ 277 (491)
T KOG2610|consen 269 IYDREIWKR 277 (491)
T ss_pred HHHHHHHHH
Confidence 998754433
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.05 Score=47.27 Aligned_cols=171 Identities=13% Similarity=0.111 Sum_probs=113.9
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 038622 10 DMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVT 89 (587)
Q Consensus 10 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 89 (587)
+++++-+++....-..-.......|++..|...|..+.... +.+......++.+|...|+.+.|..++..+........
T Consensus 124 ~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~ 202 (304)
T COG3118 124 QFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKA 202 (304)
T ss_pred HHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhH
Confidence 33433334433333344456788999999999999998876 56678888999999999999999999998765421111
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCcccHHHHHH
Q 038622 90 NVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGF-DPDVFTYNSLIS 168 (587)
Q Consensus 90 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~ 168 (587)
......-+..+.+.....+...+-+++-.. +.|...-..+...+...|+.+.|.+.+-.++.++. .-|...-..++.
T Consensus 203 ~~~l~a~i~ll~qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle 280 (304)
T COG3118 203 AHGLQAQIELLEQAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLE 280 (304)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHH
Confidence 111222344555555555555555555543 55777888899999999999999998877776521 224556666777
Q ss_pred HHHhcCCHHHHHHHH
Q 038622 169 GLCKLGEVEEAVEIL 183 (587)
Q Consensus 169 ~~~~~g~~~~a~~~~ 183 (587)
.+...|..+.+...+
T Consensus 281 ~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 281 LFEAFGPADPLVLAY 295 (304)
T ss_pred HHHhcCCCCHHHHHH
Confidence 776666444433333
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0079 Score=43.54 Aligned_cols=78 Identities=19% Similarity=0.283 Sum_probs=57.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHhcC--------ChHHHHHHHHHHHhCCCCCCcccHHH
Q 038622 95 VLVHGFCKEGRIEDALSFIQEMVSEGF-NPDQFTYNTLVNGLCKVG--------HVKQALEVMDMMLQEGFDPDVFTYNS 165 (587)
Q Consensus 95 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ 165 (587)
.-+..+...+++.....+|+.+.+.|+ -|+..+|+.++...++.. +.-+.+.+|+.++..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344555566889999999999998888 888889998888776543 23456677777777777777777777
Q ss_pred HHHHHHh
Q 038622 166 LISGLCK 172 (587)
Q Consensus 166 l~~~~~~ 172 (587)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 7766543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.086 Score=46.99 Aligned_cols=229 Identities=13% Similarity=0.049 Sum_probs=144.8
Q ss_pred HHHhcCChHHHHHHHHHHHHcC--CCCCHHhHHHHHHHHHccCChHHHHHHHHH----HHHCC-CCCCHHHHHHHHHHHH
Q 038622 239 GLCLTSNFDVAMELFQEMKTKG--CQPDEFTYNMLIDSLCSRGMLEEALKLLKE----MESSG-CARNVVTYNTLIDGFC 311 (587)
Q Consensus 239 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~-~~~~~~~~~~l~~~~~ 311 (587)
-+....+.++++..+.+....- ....-.++..+..+..+.|.+++++..--. +.+.. ...-..++..+.+++.
T Consensus 15 ~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e 94 (518)
T KOG1941|consen 15 QLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNE 94 (518)
T ss_pred hHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788899998888776541 011124555667778888888877654322 22211 0111234556666666
Q ss_pred ccCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CC--CHhhHHHHHHHHHh
Q 038622 312 KLKRIEEAEEIFDEMEIQ-GISR---NSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGL---KP--DKFTYNSLLTYYCR 382 (587)
Q Consensus 312 ~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~ 382 (587)
+.-++.+++.+-..-... |..+ .-.....+..++...+.++++++.|+.+.+-.. +| ...++..+...|..
T Consensus 95 ~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~ 174 (518)
T KOG1941|consen 95 KLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ 174 (518)
T ss_pred HHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH
Confidence 666677776665544332 1112 113344567778888899999999999886311 11 23468889999999
Q ss_pred cCCHHHHHHHHHHHHHC----CCCCCc------chHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-hHhHHHHH
Q 038622 383 AGDIKRAADIVQNMTSN----GCEPDI------VTYGTLIGGLCKAGRVEVASKLLRSIQMK----GIVLT-PQAYNPVI 447 (587)
Q Consensus 383 ~~~~~~A~~~~~~~~~~----~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~ 447 (587)
..|+++|.-+..++.+. ++. +. .+...+.-++...|..-.|.+..++..+. |-.+. ......++
T Consensus 175 l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~a 253 (518)
T KOG1941|consen 175 LKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFA 253 (518)
T ss_pred HHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 99999999888776542 222 21 13344556677788888888887776654 22211 13345677
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 038622 448 QALFRRKRTTEAMRLFREMME 468 (587)
Q Consensus 448 ~~~~~~g~~~~A~~~~~~~~~ 468 (587)
..|...|+.+.|+.-|+++..
T Consensus 254 DIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 254 DIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHhcccHhHHHHHHHHHHH
Confidence 888888999988888887764
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0018 Score=45.06 Aligned_cols=62 Identities=16% Similarity=0.208 Sum_probs=32.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CC-hHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038622 407 TYGTLIGGLCKAGRVEVASKLLRSIQMK----GIV-LT-PQAYNPVIQALFRRKRTTEAMRLFREMME 468 (587)
Q Consensus 407 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (587)
++..++..|...|++++|++.++++.+. |.. |. ..++..++.++...|++++|+++++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4555556666666666666666555433 111 01 23455566666666666666666666554
|
... |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0044 Score=49.76 Aligned_cols=97 Identities=22% Similarity=0.228 Sum_probs=80.0
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc-hhhhhhhH
Q 038622 481 VFRGLCNGGGPIGEAVDFVIEMLERGFLPE-----FSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR-ETSMVRGF 554 (587)
Q Consensus 481 l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~ 554 (587)
-+.-++..|. +++|..-|..+++. +++. ...|.+-+.++.++++++.|+.-..++++.+|...- ...-+.+|
T Consensus 101 EGN~~F~ngd-yeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 101 EGNELFKNGD-YEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAY 178 (271)
T ss_pred HHHHhhhccc-HHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHH
Confidence 3445678899 99999999999985 4442 235667788999999999999999999999997643 44557789
Q ss_pred HHHHHHHHHHHhcchhhhccCchhh
Q 038622 555 LKIRKFQDALATFGDILDSRMPRKT 579 (587)
Q Consensus 555 ~~~~~~~~A~~~~~~~~~~~~~~~~ 579 (587)
-+..+++.|+.-|+++++..|...+
T Consensus 179 ek~ek~eealeDyKki~E~dPs~~e 203 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESDPSRRE 203 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhCcchHH
Confidence 9999999999999999999987654
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0015 Score=35.51 Aligned_cols=28 Identities=50% Similarity=0.942 Sum_probs=13.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 038622 127 TYNTLVNGLCKVGHVKQALEVMDMMLQE 154 (587)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (587)
+|+.++.+|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0025 Score=35.52 Aligned_cols=33 Identities=18% Similarity=0.392 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 512 SSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 512 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
.++..++.++...|++++|++.++++++..|.+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 567888999999999999999999999888863
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.014 Score=43.24 Aligned_cols=93 Identities=15% Similarity=0.104 Sum_probs=76.2
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC-----chhhhhhhHH
Q 038622 482 FRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD-----RETSMVRGFL 555 (587)
Q Consensus 482 ~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~~~~~ 555 (587)
+-++...|+ .+.|++.|.+++. +-| .+.+|.+-+.++.-.|+.++|+.-++++++...... ....-+..|-
T Consensus 50 ~valaE~g~-Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 50 AIALAEAGD-LDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHhccc-hHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 335678888 9999999999998 556 899999999999999999999999999999876652 1344555577
Q ss_pred HHHHHHHHHHhcchhhhccCch
Q 038622 556 KIRKFQDALATFGDILDSRMPR 577 (587)
Q Consensus 556 ~~~~~~~A~~~~~~~~~~~~~~ 577 (587)
..|+.+.|..-|..+-+-+.+.
T Consensus 127 l~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HhCchHHHHHhHHHHHHhCCHH
Confidence 8889999999998887766544
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.18 Score=41.51 Aligned_cols=186 Identities=14% Similarity=0.126 Sum_probs=103.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHH
Q 038622 347 KSRRVEDAAQLMDQMIMEGLKPD-KFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVAS 425 (587)
Q Consensus 347 ~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 425 (587)
..|-+.-|.--|.+.+. +.|+ +.+++.++-.+...|+++.|.+.|+...+.++.-+. +...-+-.+.--|++.-|.
T Consensus 77 SlGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Y-a~lNRgi~~YY~gR~~LAq 153 (297)
T COG4785 77 SLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY-AHLNRGIALYYGGRYKLAQ 153 (297)
T ss_pred hhhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchH-HHhccceeeeecCchHhhH
Confidence 34455555555666655 3454 457888888888889999999999888875443222 2222233344568888888
Q ss_pred HHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 038622 426 KLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLER 505 (587)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 505 (587)
+-+...-..++. |+ .....+..-...-++.+|..-+.+--+ ..+...|...+-.+. .|+ +. -...++++...
T Consensus 154 ~d~~~fYQ~D~~-DP-fR~LWLYl~E~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~y-Lgk-iS-~e~l~~~~~a~ 225 (297)
T COG4785 154 DDLLAFYQDDPN-DP-FRSLWLYLNEQKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFY-LGK-IS-EETLMERLKAD 225 (297)
T ss_pred HHHHHHHhcCCC-Ch-HHHHHHHHHHhhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHH-Hhh-cc-HHHHHHHHHhh
Confidence 777776665332 22 111111122234467777665443332 223333332222222 222 11 12233333321
Q ss_pred CCCCC-------HHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 506 GFLPE-------FSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 506 ~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
-..+ .+++..|+..+...|+.++|..+|+-++..+.-+
T Consensus 226 -a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVyn 270 (297)
T COG4785 226 -ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVYN 270 (297)
T ss_pred -ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHH
Confidence 1111 3567778889999999999999999888766544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.073 Score=51.75 Aligned_cols=119 Identities=18% Similarity=0.154 Sum_probs=59.7
Q ss_pred CChHHHHHHHHHHHHcCCCCChHhH-HHHHHHHHhcCCHHHHHHHHHHHHhc--CC-CCCHHHHHHHHHHHHhCCCCHHH
Q 038622 419 GRVEVASKLLRSIQMKGIVLTPQAY-NPVIQALFRRKRTTEAMRLFREMMEK--AD-PPDALTYKHVFRGLCNGGGPIGE 494 (587)
Q Consensus 419 ~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~~~~~~~ 494 (587)
.+.+.|.++++.+... -|+...| ..-++.+...|+.++|++.|+++... .. ......+..+++.+...++ |++
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~-w~~ 323 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHD-WEE 323 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHch-HHH
Confidence 3455566666666553 2233222 23345555566666666666655431 10 1123334445555555566 666
Q ss_pred HHHHHHHHHHcCCCCCHHHH-HHHHHHHHccCCH-------hHHHHHHHHHHhcC
Q 038622 495 AVDFVIEMLERGFLPEFSSF-YMLAEGLVSLGKE-------ETLVELIDMVMDKA 541 (587)
Q Consensus 495 A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~-------~~A~~~~~~~~~~~ 541 (587)
|...+.++.+.+ .=+...| +..+-++...|+. ++|.+++++++...
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 666666666522 1122222 3444455556665 66666666655433
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.24 Score=42.43 Aligned_cols=82 Identities=16% Similarity=0.184 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 038622 55 ERTFTTLMQGLIEEGNLDGALRIREQMVEHGC--LVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLV 132 (587)
Q Consensus 55 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 132 (587)
+..+..-+....+.|++++|...|+.+....+ +....+...++.++.+.++++.|+..+++.++.........|...+
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 34455555566688888888888888876532 2234455666777788888888888888887752111122344444
Q ss_pred HHHH
Q 038622 133 NGLC 136 (587)
Q Consensus 133 ~~~~ 136 (587)
.+++
T Consensus 114 kgLs 117 (254)
T COG4105 114 KGLS 117 (254)
T ss_pred HHHH
Confidence 4444
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.59 Score=46.81 Aligned_cols=276 Identities=14% Similarity=0.063 Sum_probs=149.8
Q ss_pred hHHHHHHHHHHHHcCCCCCHHhHHHHHHHH-----HccCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHcc
Q 038622 246 FDVAMELFQEMKTKGCQPDEFTYNMLIDSL-----CSRGMLEEALKLLKEMES-------SGCARNVVTYNTLIDGFCKL 313 (587)
Q Consensus 246 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 313 (587)
...+..+++.....| +......++.++ ....+.+.|+.+++.+.+ .+ .......++.+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 456777777766665 333333333333 244577777777777765 33 233556667777664
Q ss_pred C-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH----
Q 038622 314 K-----RIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKS---RRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYC---- 381 (587)
Q Consensus 314 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---- 381 (587)
. +...|..++......+ .|+.. ..++..+... .+...|.++|..+...|. ...+..+..+|.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~--~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQ--YLLGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLG 375 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHH--HHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCC
Confidence 3 5667888888877766 33332 2334333322 356788888888877663 233333333332
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHH-HH---HHh----c
Q 038622 382 RAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVI-QA---LFR----R 453 (587)
Q Consensus 382 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~---~~~----~ 453 (587)
...+...|..+++++.+.| .|...........+.. ++.+.+...+..+...+.. ...+-...+ .. ... .
T Consensus 376 v~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~ 452 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVI 452 (552)
T ss_pred cCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccc
Confidence 2246777888888887765 2222111222222223 6666666665555554333 221111111 11 111 1
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-C--CH
Q 038622 454 KRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNG---GGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSL-G--KE 527 (587)
Q Consensus 454 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g--~~ 527 (587)
.+...+...+.++...| +......+...+... +.+++.|...|..+...+ ......++.++..- | ..
T Consensus 453 ~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~~ 525 (552)
T KOG1550|consen 453 STLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKVL 525 (552)
T ss_pred cchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcchh
Confidence 24566666677666544 344444455444433 345778888888887643 66667777776532 1 15
Q ss_pred hHHHHHHHHHHhcCCC
Q 038622 528 ETLVELIDMVMDKAKF 543 (587)
Q Consensus 528 ~~A~~~~~~~~~~~~~ 543 (587)
..|.++++++.+.+..
T Consensus 526 ~~a~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 526 HLAKRYYDQASEEDSR 541 (552)
T ss_pred HHHHHHHHHHHhcCch
Confidence 7777777777765554
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.22 Score=41.67 Aligned_cols=89 Identities=8% Similarity=0.014 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHHHHhc--CCC---CCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC-----H-HHHHHHHHHHH
Q 038622 454 KRTTEAMRLFREMMEK--ADP---PDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPE-----F-SSFYMLAEGLV 522 (587)
Q Consensus 454 g~~~~A~~~~~~~~~~--~~~---~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~-----~-~~~~~l~~~~~ 522 (587)
.++++|+..|+++-+- |-. .....+..+...-...++ +.+|+++|++.....+..+ . +.+..-+-++.
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leq-Y~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl 206 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQ-YSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHL 206 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhH
Confidence 4555555555555542 111 112223333333344555 6666666666654322221 1 11222233333
Q ss_pred ccCCHhHHHHHHHHHHhcCCC
Q 038622 523 SLGKEETLVELIDMVMDKAKF 543 (587)
Q Consensus 523 ~~g~~~~A~~~~~~~~~~~~~ 543 (587)
-.++.-.+...+++..+..|.
T Consensus 207 ~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 207 CKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred hcccHHHHHHHHHHHHhcCCc
Confidence 445566666666666666665
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.022 Score=45.95 Aligned_cols=92 Identities=10% Similarity=0.092 Sum_probs=51.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038622 446 VIQALFRRKRTTEAMRLFREMMEKADPPDA----LTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGL 521 (587)
Q Consensus 446 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 521 (587)
++..+...|++++|...++..+.. +.|. ..-..+.......|. +|+|...+....+.+. .+......|+++
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~--t~De~lk~l~~lRLArvq~q~~k-~D~AL~~L~t~~~~~w--~~~~~elrGDil 169 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ--TKDENLKALAALRLARVQLQQKK-ADAALKTLDTIKEESW--AAIVAELRGDIL 169 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc--chhHHHHHHHHHHHHHHHHHhhh-HHHHHHHHhccccccH--HHHHHHHhhhHH
Confidence 345566667777777777766653 2221 122334455566666 6777666655432110 222344566677
Q ss_pred HccCCHhHHHHHHHHHHhcCC
Q 038622 522 VSLGKEETLVELIDMVMDKAK 542 (587)
Q Consensus 522 ~~~g~~~~A~~~~~~~~~~~~ 542 (587)
...|+.++|+..|+++++..+
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 170 LAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHcCchHHHHHHHHHHHHccC
Confidence 777777777777777776663
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.14 Score=42.12 Aligned_cols=187 Identities=16% Similarity=0.008 Sum_probs=109.9
Q ss_pred HHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 038622 28 KALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIE 107 (587)
Q Consensus 28 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 107 (587)
..|-..|-+.-|.-=|....... |.-+.+|+.++.-+...|+++.|.+.|+...+.++. ...+...-+..+.--|++.
T Consensus 73 vlYDSlGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-y~Ya~lNRgi~~YY~gR~~ 150 (297)
T COG4785 73 VLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRYK 150 (297)
T ss_pred chhhhhhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-chHHHhccceeeeecCchH
Confidence 34555666666666666666553 445778888888888999999999999999988733 3333333334455678888
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHH-HHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHH-HHHhcCCHHHHHHHHHH
Q 038622 108 DALSFIQEMVSEGFNPDQFTYNTLVN-GLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLIS-GLCKLGEVEEAVEILNQ 185 (587)
Q Consensus 108 ~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~ 185 (587)
-|.+-+...-+.+ +.|+ |..+-. .--+.-++.+|..-+.+--+. .|..-|...+- .|...=..+. +++.
T Consensus 151 LAq~d~~~fYQ~D-~~DP--fR~LWLYl~E~k~dP~~A~tnL~qR~~~---~d~e~WG~~iV~~yLgkiS~e~---l~~~ 221 (297)
T COG4785 151 LAQDDLLAFYQDD-PNDP--FRSLWLYLNEQKLDPKQAKTNLKQRAEK---SDKEQWGWNIVEFYLGKISEET---LMER 221 (297)
T ss_pred hhHHHHHHHHhcC-CCCh--HHHHHHHHHHhhCCHHHHHHHHHHHHHh---ccHhhhhHHHHHHHHhhccHHH---HHHH
Confidence 8887776666552 2222 222221 112345667776655443331 24344443332 2222111222 2222
Q ss_pred HHhCCC------CCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 038622 186 MILRDC------SPNTITYNTLISTLCKENQVEEATELARVLTSKG 225 (587)
Q Consensus 186 ~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 225 (587)
+..... ..-..++.-++.-+...|+.++|..+|+.....+
T Consensus 222 ~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 222 LKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 222110 1124578888999999999999999998887753
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.11 Score=50.18 Aligned_cols=97 Identities=16% Similarity=0.150 Sum_probs=45.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038622 407 TYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLC 486 (587)
Q Consensus 407 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (587)
+...+...+.+...+..|.++|.++-.. ..+.......++|.+|..+.++..+. .|+ .|...++.++
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~d--Vy~pyaqwLA 815 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDD--VYMPYAQWLA 815 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--ccc--ccchHHHHhh
Confidence 3344444444444555555555544321 13344455556666666655554432 222 1223333344
Q ss_pred hCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 038622 487 NGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMD 539 (587)
Q Consensus 487 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 539 (587)
+..+ +++|.+. |.+.|+-.||.++++++..
T Consensus 816 E~Dr-FeEAqkA----------------------fhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 816 ENDR-FEEAQKA----------------------FHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhh-HHHHHHH----------------------HHHhcchHHHHHHHHHhhh
Confidence 4444 5555444 4445556666666666543
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0013 Score=36.51 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=25.5
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHH
Q 038622 499 VIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLV 531 (587)
Q Consensus 499 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 531 (587)
|+++++ +.| ++.+|..|+.+|...|++++|+
T Consensus 2 y~kAie--~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIE--LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHH--HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 577777 456 7888999999999999998886
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.02 Score=45.71 Aligned_cols=71 Identities=25% Similarity=0.299 Sum_probs=48.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCHHHH
Q 038622 407 TYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMME-----KADPPDALTY 478 (587)
Q Consensus 407 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~ 478 (587)
....++..+...|++++|..+++++....+- +...|..++.++...|+..+|++.|+++.+ .|++|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 4556666777788888888888888886443 567888888888888888888888887764 3667776654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.12 Score=48.48 Aligned_cols=63 Identities=13% Similarity=0.210 Sum_probs=44.0
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 038622 440 PQAYNPVIQALFRRKRTTEAMRLFREMMEKADPP--DALTYKHVFRGLCNGGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 504 (587)
..+-..++.++.+.|+.++|++.+.++++.. |. .......++..+...+. +.++..++.+--+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~-Yad~q~lL~kYdD 323 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQA-YADVQALLAKYDD 323 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCC-HHHHHHHHHHhcc
Confidence 3444567777788888888888888887642 32 22345567777778888 8888888887543
|
The molecular function of this protein is uncertain. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.22 Score=39.49 Aligned_cols=126 Identities=16% Similarity=0.143 Sum_probs=83.1
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCh-HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH-HH--HHHHHHHHhCCC
Q 038622 415 LCKAGRVEVASKLLRSIQMKGIVLTP-QAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDAL-TY--KHVFRGLCNGGG 490 (587)
Q Consensus 415 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~--~~l~~~~~~~~~ 490 (587)
+.+.+..++|+.-|..+.+.|...-+ ......+......|+...|...|.++-.....|... .. ..-...+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 34667888888888888776544222 334455666777888888888888887643222221 11 122334567777
Q ss_pred CHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCC
Q 038622 491 PIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAK 542 (587)
Q Consensus 491 ~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 542 (587)
|++...-.+.+...+ .| ...+...|+-.-++.|++.+|.++|..+.....
T Consensus 148 -y~dV~srvepLa~d~-n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ 198 (221)
T COG4649 148 -YDDVSSRVEPLAGDG-NPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQ 198 (221)
T ss_pred -HHHHHHHhhhccCCC-ChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcccc
Confidence 888777777665433 34 566677888888888999999998888776443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0048 Score=34.37 Aligned_cols=32 Identities=19% Similarity=0.323 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHHhcCCC
Q 038622 512 SSFYMLAEGLVSLGKEETLVELIDMVMDKAKF 543 (587)
Q Consensus 512 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 543 (587)
.+|..+|.+|...|++++|+..++++++.+|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46788888999999999999999999888875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.78 Score=45.50 Aligned_cols=110 Identities=18% Similarity=0.170 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHH
Q 038622 337 TYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLC 416 (587)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 416 (587)
+.+.-+.-+...|+..+|.++-.+.. -||...|-.-+.+++..+++++-.++-+... ++.-|.-....|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 34444455566677777776655543 3566666666777777777776655544332 2344666677777
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHH
Q 038622 417 KAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFRE 465 (587)
Q Consensus 417 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 465 (587)
+.|+.++|.+++-+.... . ....+|.+.|++.+|.++--+
T Consensus 756 ~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHHH
Confidence 778888887777654321 1 455667777777777765443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.3 Score=41.16 Aligned_cols=204 Identities=13% Similarity=0.123 Sum_probs=91.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHc
Q 038622 198 YNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCS 277 (587)
Q Consensus 198 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 277 (587)
|..-..+|....++++|...+.+..+. ...+...|. ....++.|.-+.+++... +.-...+......|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 444445566666777777666655432 111111111 112233444444444332 1112333444445555
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc---CC--CCCHHHHHHHHHHHHhcCCHH
Q 038622 278 RGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQ---GI--SRNSVTYNTLIDGLCKSRRVE 352 (587)
Q Consensus 278 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~~~~~ 352 (587)
.|.++.|-..++++-+. ...-++++|+++|++.... +- ......+......+.+...++
T Consensus 104 ~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT 167 (308)
T ss_pred hCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence 55555555555444321 2223444555555443221 00 001122333444556666666
Q ss_pred HHHHHHHHHHHc----CCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCCcchHHHHHHHHHhcCChHHH
Q 038622 353 DAAQLMDQMIME----GLKPDK-FTYNSLLTYYCRAGDIKRAADIVQNMTSNGC---EPDIVTYGTLIGGLCKAGRVEVA 424 (587)
Q Consensus 353 ~A~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a 424 (587)
+|...+.+-... ..-++. ..+...+..+....|+..|...++.--+.+- ..+..+...|+.+| ..|+.+++
T Consensus 168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~ 246 (308)
T KOG1585|consen 168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEI 246 (308)
T ss_pred HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHH
Confidence 665554443211 011121 2344444555566677777777776444211 11344555566554 45666666
Q ss_pred HHHH
Q 038622 425 SKLL 428 (587)
Q Consensus 425 ~~~~ 428 (587)
.+++
T Consensus 247 ~kvl 250 (308)
T KOG1585|consen 247 KKVL 250 (308)
T ss_pred HHHH
Confidence 5554
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.66 Score=42.39 Aligned_cols=104 Identities=21% Similarity=0.252 Sum_probs=54.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 038622 234 NSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKL 313 (587)
Q Consensus 234 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 313 (587)
+..+..+...|+...|.++-.+.. -|+...|...+.+++..++|++-..+-.. ..++..|..++.++.+.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHC
Confidence 333444455566655555544432 35566666666666666666655443221 12334555666666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038622 314 KRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQL 357 (587)
Q Consensus 314 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 357 (587)
|+..+|..+..++ ++ ..-+..|.+.|++.+|.+.
T Consensus 251 ~~~~eA~~yI~k~-----~~-----~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 251 GNKKEASKYIPKI-----PD-----EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCHHHHHHHHHhC-----Ch-----HHHHHHHHHCCCHHHHHHH
Confidence 6666666555441 11 2344555666666666544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0099 Score=35.52 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=9.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 038622 445 PVIQALFRRKRTTEAMRLFREMME 468 (587)
Q Consensus 445 ~l~~~~~~~g~~~~A~~~~~~~~~ 468 (587)
.++..|...|++++|+++|+++++
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333444444444444444444443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.52 Score=44.49 Aligned_cols=152 Identities=14% Similarity=0.128 Sum_probs=79.1
Q ss_pred HHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 038622 25 ILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEG 104 (587)
Q Consensus 25 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 104 (587)
.++.-..+..+.+.-++.-.++++.+ +.....|..+..- ......++.++++++.+.+- ..+ ......
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~-pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE----~~l---g~s~~~-- 240 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEIN-PDCADAYILLAEE--EASTIVEAEELLRQAVKAGE----ASL---GKSQFL-- 240 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhh-hhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHH----Hhh---chhhhh--
Confidence 44555566666666666666666543 2222333333221 23346677777777665431 000 000000
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCcccHHHHHHHHHhcCCHHHHHHHH
Q 038622 105 RIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFD-PDVFTYNSLISGLCKLGEVEEAVEIL 183 (587)
Q Consensus 105 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~ 183 (587)
+..-...+........+-..+-..+..++.+.|+.++|++.++++.+.... ....+...++.++...+.+.++..++
T Consensus 241 --~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 241 --QHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred --hcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 000011111222222222334445666677778888888888888764221 12346667788888888888888888
Q ss_pred HHHHhCC
Q 038622 184 NQMILRD 190 (587)
Q Consensus 184 ~~~~~~~ 190 (587)
.+..+..
T Consensus 319 ~kYdDi~ 325 (539)
T PF04184_consen 319 AKYDDIS 325 (539)
T ss_pred HHhcccc
Confidence 7765443
|
The molecular function of this protein is uncertain. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.89 Score=42.90 Aligned_cols=95 Identities=9% Similarity=0.133 Sum_probs=68.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038622 442 AYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGL--CNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAE 519 (587)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 519 (587)
.-+.+...+...|-+.+|...|....... ||+...+..++..- ....+ ..-+..+|+.|+.. +..++..|.....
T Consensus 462 l~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~-fg~d~~lw~~y~~ 538 (568)
T KOG2396|consen 462 LKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCN-LANIREYYDRALRE-FGADSDLWMDYMK 538 (568)
T ss_pred hhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHH-hCCChHHHHHHHH
Confidence 34567777788888899999998888863 66666777766542 23334 67788888888853 3367888877666
Q ss_pred HHHccCCHhHHHHHHHHHHh
Q 038622 520 GLVSLGKEETLVELIDMVMD 539 (587)
Q Consensus 520 ~~~~~g~~~~A~~~~~~~~~ 539 (587)
.-...|..+.+-.++-++.+
T Consensus 539 ~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 539 EELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred hhccCCCcccccHHHHHHHH
Confidence 66688888888887777665
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.76 Score=41.39 Aligned_cols=160 Identities=18% Similarity=0.190 Sum_probs=81.7
Q ss_pred HhcCChHHHHHHHHHHHHcC--CCCCH-----HhHHHHHHHHHccC-ChHHHHHHHHHHHHC----C----CCCC-----
Q 038622 241 CLTSNFDVAMELFQEMKTKG--CQPDE-----FTYNMLIDSLCSRG-MLEEALKLLKEMESS----G----CARN----- 299 (587)
Q Consensus 241 ~~~~~~~~a~~~~~~~~~~~--~~~~~-----~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~----~----~~~~----- 299 (587)
.+.|+.+.|..++.++.... ..|+. ..+..++......+ +++.|..++++..+. + ..++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 34566666666666665432 12221 23344444455556 777777776665432 1 1111
Q ss_pred HHHHHHHHHHHHccCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 038622 300 VVTYNTLIDGFCKLKRIE---EAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSL 376 (587)
Q Consensus 300 ~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 376 (587)
..++..++.++...+..+ +|..+++.+... .+..+..+..-+..+.+.++.+.+.+.+.+|+..- .-....+...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~ 161 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHH
Confidence 134556667777666544 444455555333 23345555566666666777788888888887752 2122233333
Q ss_pred HHHH---HhcCCHHHHHHHHHHHHHCCCCC
Q 038622 377 LTYY---CRAGDIKRAADIVQNMTSNGCEP 403 (587)
Q Consensus 377 ~~~~---~~~~~~~~A~~~~~~~~~~~~~~ 403 (587)
+..+ .. .....+...+..++...+.|
T Consensus 162 l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~ 190 (278)
T PF08631_consen 162 LHHIKQLAE-KSPELAAFCLDYLLLNRFKS 190 (278)
T ss_pred HHHHHHHHh-hCcHHHHHHHHHHHHHHhCC
Confidence 3332 22 23345555555554433333
|
It is also involved in sporulation []. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.13 Score=42.60 Aligned_cols=68 Identities=21% Similarity=0.339 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc----------------CChHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 038622 209 NQVEEATELARVLTSKGILPDVCTFNSLIQGLCLT----------------SNFDVAMELFQEMKTKGCQPDEFTYNMLI 272 (587)
Q Consensus 209 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 272 (587)
|..+=....++.|.+.|+..|..+|+.|+.++=+. .+-+-|++++++|...|+-||..++..++
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll 145 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLL 145 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 44555555555666666666666666666554321 12233444555555555555555555444
Q ss_pred HHHH
Q 038622 273 DSLC 276 (587)
Q Consensus 273 ~~~~ 276 (587)
..+.
T Consensus 146 ~iFG 149 (228)
T PF06239_consen 146 NIFG 149 (228)
T ss_pred HHhc
Confidence 4443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.79 Score=41.29 Aligned_cols=191 Identities=10% Similarity=0.033 Sum_probs=96.7
Q ss_pred HHhcC-CHHHHHHHHHHHHHc--------CCCCCH-----hhHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCcch
Q 038622 345 LCKSR-RVEDAAQLMDQMIME--------GLKPDK-----FTYNSLLTYYCRAGDIK---RAADIVQNMTSNGCEPDIVT 407 (587)
Q Consensus 345 ~~~~~-~~~~A~~~~~~~~~~--------~~~~~~-----~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~ 407 (587)
....+ +++.|...++++.+. ...|+. .++..++.++...+..+ +|..+++.+...... .+..
T Consensus 45 l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~ 123 (278)
T PF08631_consen 45 LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEV 123 (278)
T ss_pred HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHH
Confidence 34445 777777666665542 122232 24566677777766654 455555555443222 2444
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHH---HhcCCHHHHHHHHHHHHhcCCCCCHH-HHH-HHH
Q 038622 408 YGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQAL---FRRKRTTEAMRLFREMMEKADPPDAL-TYK-HVF 482 (587)
Q Consensus 408 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~-~l~ 482 (587)
+..-+..+.+.++.+++.+++.+|...- ......+..++..+ .. .....|...+..++..-..|... ... .++
T Consensus 124 ~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl 201 (278)
T PF08631_consen 124 FLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVL 201 (278)
T ss_pred HHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 5455666666788888888888888752 11223333333333 33 33456666666665542333332 111 111
Q ss_pred ---HHHHhCCC---C--HHHHHHHHHHHHHcCCCC-CHH-------HHHHHHHHHHccCCHhHHHHHHHHHH
Q 038622 483 ---RGLCNGGG---P--IGEAVDFVIEMLERGFLP-EFS-------SFYMLAEGLVSLGKEETLVELIDMVM 538 (587)
Q Consensus 483 ---~~~~~~~~---~--~~~A~~~~~~~~~~~~~p-~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~ 538 (587)
......++ . .+....++....+....| +.. .++..+..+++.++|++|.++|+-++
T Consensus 202 ~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 202 TRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 11112111 0 222333333222211122 322 23445567788999999999998665
|
It is also involved in sporulation []. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.31 Score=38.65 Aligned_cols=53 Identities=8% Similarity=0.020 Sum_probs=25.0
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 038622 171 CKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTS 223 (587)
Q Consensus 171 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 223 (587)
...|.++....-.+.+...+-+....+...|+-+-.+.|++.+|..+|.++..
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 34455555555444444333222333344444455555555555555555544
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.15 Score=45.03 Aligned_cols=159 Identities=15% Similarity=0.053 Sum_probs=119.1
Q ss_pred HHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-C--CCCChhhHHHHHHHHHhcC
Q 038622 28 KALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEH-G--CLVTNVTVNVLVHGFCKEG 104 (587)
Q Consensus 28 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~--~~~~~~~~~~l~~~~~~~~ 104 (587)
..+..+|++.+|-..++++++.. |.|.-.+.-.=.+++-.|+.+.-...+++++.. + .|....+...+.-++...|
T Consensus 111 ai~~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 111 AILWGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HHhhccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 34567899999999999888754 778777777778899999999999999998865 2 3333444555566777899
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---cccHHHHHHHHHhcCCHHHHHH
Q 038622 105 RIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPD---VFTYNSLISGLCKLGEVEEAVE 181 (587)
Q Consensus 105 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~ 181 (587)
-+++|.+.-++.++.+ +-|..+......++--.|+++++.+...+-...--... ..-|-..+-.+...+.++.|++
T Consensus 190 ~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 190 IYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred cchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 9999999999999876 66788888899999999999999998876543211111 1223334556667799999999
Q ss_pred HHHHHHh
Q 038622 182 ILNQMIL 188 (587)
Q Consensus 182 ~~~~~~~ 188 (587)
+|+.-+-
T Consensus 269 IyD~ei~ 275 (491)
T KOG2610|consen 269 IYDREIW 275 (491)
T ss_pred HHHHHHH
Confidence 9987543
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.97 Score=41.26 Aligned_cols=184 Identities=16% Similarity=0.085 Sum_probs=107.0
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHh----
Q 038622 346 CKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCR----AGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCK---- 417 (587)
Q Consensus 346 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 417 (587)
...+++..+...+......+ +......+...|.. ..+...|..+|....+.|. ......|+..|..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv 125 (292)
T COG0790 52 AYPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGV 125 (292)
T ss_pred cccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCc
Confidence 34567888888888777643 22344444444433 2457778888886666543 3345556666654
Q ss_pred cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC-------CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhC--
Q 038622 418 AGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRK-------RTTEAMRLFREMMEKADPPDALTYKHVFRGLCNG-- 488 (587)
Q Consensus 418 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 488 (587)
..+..+|..+++++.+.|..+.......++..+.... +...|...|.++...+ +......++..|..-
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~G 202 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLG 202 (292)
T ss_pred ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCC
Confidence 3478888888888887654422233555555555431 2336777787777765 333333444433221
Q ss_pred -CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC---------------CHhHHHHHHHHHHhcCC
Q 038622 489 -GGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLG---------------KEETLVELIDMVMDKAK 542 (587)
Q Consensus 489 -~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~~ 542 (587)
..+.++|...|.++.+.| . ......++ .+...| +...|..++.......+
T Consensus 203 v~~d~~~A~~wy~~Aa~~g--~-~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 203 VPRDLKKAFRWYKKAAEQG--D-GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred CCcCHHHHHHHHHHHHHCC--C-HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 123778888888888765 2 56666666 555555 45555555555555444
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=96.17 E-value=1.2 Score=42.06 Aligned_cols=65 Identities=15% Similarity=0.051 Sum_probs=41.1
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038622 369 DKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEP---DIVTYGTLIGGLCKAGRVEVASKLLRSIQM 433 (587)
Q Consensus 369 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 433 (587)
...++..++..+.+.|.++.|...+..+...+... .+.....-+..+...|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456667777777777777777777766543111 234445556666667777777777776666
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.26 Score=40.95 Aligned_cols=32 Identities=41% Similarity=0.504 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 038622 352 EDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRA 383 (587)
Q Consensus 352 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 383 (587)
+-|++++++|...|+-||.+++..+++.+.+.
T Consensus 120 ~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~ 151 (228)
T PF06239_consen 120 ECAIDLLEQMENNGVMPDKETEQMLLNIFGRK 151 (228)
T ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHhccc
Confidence 34555555555555555555555555555433
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.01 Score=32.73 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=25.2
Q ss_pred HHHHHHHHHHccCCHhHHHHHHHHHHhcCCC
Q 038622 513 SFYMLAEGLVSLGKEETLVELIDMVMDKAKF 543 (587)
Q Consensus 513 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 543 (587)
++..++.++.+.|++++|++.++++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5667888888888888888888888887775
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.037 Score=44.20 Aligned_cols=53 Identities=19% Similarity=0.240 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCC-----------HhHHHHHHHHHHhcCCCCCch
Q 038622 493 GEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGK-----------EETLVELIDMVMDKAKFSDRE 547 (587)
Q Consensus 493 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~~~~~ 547 (587)
++|+.-|++++. +.| ...++..+|.+|...+. +++|...|+++.+.+|.++.+
T Consensus 52 edAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y 116 (186)
T PF06552_consen 52 EDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELY 116 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred HHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 334444444444 445 34566666665554322 566666666666677766543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.72 Score=37.63 Aligned_cols=91 Identities=12% Similarity=0.103 Sum_probs=45.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC--cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 038622 377 LTYYCRAGDIKRAADIVQNMTSNGCEPD--IVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRK 454 (587)
Q Consensus 377 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 454 (587)
...+...+++++|...++.......+.+ ..+-..|++.....|.+++|++.++.....+.. ......-+..+...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcC
Confidence 3445566666666666665554211111 111233455555666666666666554442211 122233455566666
Q ss_pred CHHHHHHHHHHHHhc
Q 038622 455 RTTEAMRLFREMMEK 469 (587)
Q Consensus 455 ~~~~A~~~~~~~~~~ 469 (587)
+.++|+.-|++++..
T Consensus 174 ~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 174 DKQEARAAYEKALES 188 (207)
T ss_pred chHHHHHHHHHHHHc
Confidence 666666666666654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.3 Score=46.83 Aligned_cols=105 Identities=17% Similarity=0.139 Sum_probs=48.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 038622 128 YNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCK 207 (587)
Q Consensus 128 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (587)
...++..+.+.|..+.|+.+... +. .-.....+.|+++.|.++.++ ..+...|..|+.....
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHH
Confidence 44555555555555555554322 11 123344555555555554332 1244455555555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038622 208 ENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTK 259 (587)
Q Consensus 208 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 259 (587)
.|+++-|+..|.+..+ +..++-.|...|+.+.-.++.+.....
T Consensus 360 ~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 360 QGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 5555555555544321 334444455555555555544444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=1.6 Score=41.00 Aligned_cols=122 Identities=15% Similarity=0.162 Sum_probs=67.8
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHH
Q 038622 66 IEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQAL 145 (587)
Q Consensus 66 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 145 (587)
...|+.-.|-+-+..++... +..+.............|+++.+...+....+. +.....+...+++...+.|++++|.
T Consensus 300 ~~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hhccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 35566666655554444432 333333333444556667777777666555432 2233445566666666777777777
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038622 146 EVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRD 190 (587)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 190 (587)
..-+-|+...+. +++.....+...-..|-++++...++++...+
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 776666655443 33333333333444566677777777766554
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.015 Score=32.80 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=19.6
Q ss_pred HHHHHHHHHHccCCHhHHHHHHHHHHh
Q 038622 513 SFYMLAEGLVSLGKEETLVELIDMVMD 539 (587)
Q Consensus 513 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 539 (587)
++..|+.+|.+.|++++|++++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356788888888888888888888543
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.028 Score=49.42 Aligned_cols=95 Identities=15% Similarity=0.001 Sum_probs=55.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Q 038622 411 LIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGG 490 (587)
Q Consensus 411 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 490 (587)
-+.-|.++|.+++|+.+|.+.....+. ++..+..-+.+|.+..++..|..-...++..+ ..-...|..-+.+-...|.
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 355566677777777777666653221 55556666666777666666666666665542 2222334444445555566
Q ss_pred CHHHHHHHHHHHHHcCCCCC
Q 038622 491 PIGEAVDFVIEMLERGFLPE 510 (587)
Q Consensus 491 ~~~~A~~~~~~~~~~~~~p~ 510 (587)
..+|.+-++.+++ +.|+
T Consensus 181 -~~EAKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 181 -NMEAKKDCETVLA--LEPK 197 (536)
T ss_pred -HHHHHHhHHHHHh--hCcc
Confidence 6666666666666 4453
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=95.79 E-value=1.8 Score=40.88 Aligned_cols=43 Identities=14% Similarity=0.008 Sum_probs=28.4
Q ss_pred HHHHHHHHHHcc------CCHhHHHHHHHHHHhcCCCCC-chhhhhhhHH
Q 038622 513 SFYMLAEGLVSL------GKEETLVELIDMVMDKAKFSD-RETSMVRGFL 555 (587)
Q Consensus 513 ~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~ 555 (587)
++..++.-.... ++.+++...|+.+.+..|... .+..++..+.
T Consensus 254 ~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 254 AFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFND 303 (352)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence 444555555555 788888899999888888653 4555555433
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.75 E-value=2.5 Score=42.44 Aligned_cols=76 Identities=22% Similarity=0.132 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHH
Q 038622 281 LEEALKLLKEMESSGCARNVVTYNTLIDGFCKL----KRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCK----SRRVE 352 (587)
Q Consensus 281 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 352 (587)
...+...+.+....| +......+...|..- .+++.|...+......+ ......+...+.. .. +.
T Consensus 455 ~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~~ 526 (552)
T KOG1550|consen 455 LERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-LH 526 (552)
T ss_pred hhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-hH
Confidence 444555555555443 344445555544432 34666666666665543 3333334433321 23 56
Q ss_pred HHHHHHHHHHHc
Q 038622 353 DAAQLMDQMIME 364 (587)
Q Consensus 353 ~A~~~~~~~~~~ 364 (587)
.|.+++++....
T Consensus 527 ~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 527 LAKRYYDQASEE 538 (552)
T ss_pred HHHHHHHHHHhc
Confidence 777777776654
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.022 Score=31.64 Aligned_cols=32 Identities=19% Similarity=0.293 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHHhcCCC
Q 038622 512 SSFYMLAEGLVSLGKEETLVELIDMVMDKAKF 543 (587)
Q Consensus 512 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 543 (587)
.++..++.+|.+.|++++|...++++++.+|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45778888888899999999999988887773
|
... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.48 Score=45.48 Aligned_cols=81 Identities=19% Similarity=0.283 Sum_probs=34.4
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 038622 159 DVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQ 238 (587)
Q Consensus 159 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 238 (587)
+...|..++......|+++-|++.|.+.. -+..|+-.|...|+.+.-.++.+.....| -++....
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~ 410 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQ 410 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHH
Confidence 34455555555555555555555554421 12333444444555444444444443332 1233333
Q ss_pred HHHhcCChHHHHHHHH
Q 038622 239 GLCLTSNFDVAMELFQ 254 (587)
Q Consensus 239 ~~~~~~~~~~a~~~~~ 254 (587)
++...|+.++..+++.
T Consensus 411 ~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 411 AALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHT-HHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHH
Confidence 3444455555444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.61 E-value=2.8 Score=41.88 Aligned_cols=109 Identities=19% Similarity=0.274 Sum_probs=62.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 038622 372 TYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALF 451 (587)
Q Consensus 372 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 451 (587)
+.+.-+.-+...|+..+|.++-.+.. -|+...|..-+.++...+++++-.++-+... ++.-|.....+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 34444555566677777766665543 2466666666677777777766555543322 2344555666777
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 038622 452 RRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVI 500 (587)
Q Consensus 452 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~ 500 (587)
+.|+.++|.+++-+.... . ....+|.+.|+ +.+|.+..-
T Consensus 756 ~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~-~~eAad~A~ 794 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGD-VKEAADLAA 794 (829)
T ss_pred hcccHHHHhhhhhccCCh-----H----HHHHHHHHhcc-HHHHHHHHH
Confidence 777777777766654321 1 33445566666 666655443
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.46 E-value=2.3 Score=40.07 Aligned_cols=60 Identities=22% Similarity=0.121 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC---CchhhhhhhHHHHHHHHHHHHhcchhh
Q 038622 512 SSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS---DRETSMVRGFLKIRKFQDALATFGDIL 571 (587)
Q Consensus 512 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~~~ 571 (587)
..+..|+.+|.-.|++++|..++..+...-+.- .....-...-++.|+-..|+..+++-.
T Consensus 620 v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~~ 682 (696)
T KOG2471|consen 620 VLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQCT 682 (696)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHhcc
Confidence 356789999999999999999998777666522 111222223457888888888877643
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.24 Score=39.08 Aligned_cols=115 Identities=19% Similarity=0.164 Sum_probs=78.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 038622 445 PVIQALFRRKRTTEAMRLFREMMEKADPPDALTY-KHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLV 522 (587)
Q Consensus 445 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 522 (587)
.++..-...++.+++..++..+.-. .|..... ..-++.+...|+ |.+|+.+++.+.+. .| .+..-..++.++.
T Consensus 15 e~~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~-w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 15 EVLSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGD-WDDALRLLRELEER--APGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCC-HHHHHHHHHHHhcc--CCCChHHHHHHHHHHH
Confidence 3445556788999999999999885 4544333 344556778888 99999999998764 35 4555566777777
Q ss_pred ccCCHhHHHHHHHHHHhcCCCCCchhhhhhhHHHHHHHHHHHHh
Q 038622 523 SLGKEETLVELIDMVMDKAKFSDRETSMVRGFLKIRKFQDALAT 566 (587)
Q Consensus 523 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 566 (587)
..|+.+ =..+.+.+++.++++ ....++..+........|...
T Consensus 90 ~~~D~~-Wr~~A~evle~~~d~-~a~~Lv~~Ll~~~~~~~a~~~ 131 (160)
T PF09613_consen 90 ALGDPS-WRRYADEVLESGADP-DARALVRALLARADLEPAHEA 131 (160)
T ss_pred HcCChH-HHHHHHHHHhcCCCh-HHHHHHHHHHHhccccchhhh
Confidence 777643 344455666666644 346666777777766666653
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.034 Score=48.98 Aligned_cols=98 Identities=9% Similarity=0.041 Sum_probs=82.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 038622 444 NPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVS 523 (587)
Q Consensus 444 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 523 (587)
..-+.-|+++|.+++|+.+|.+.+... |-++.++..-+.+|.+... +..|..-...++..+ +.-..+|...+.+-..
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~-FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKS-FAQAEEDCEAAIALD-KLYVKAYSRRMQARES 177 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHH-HHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHH
Confidence 345788999999999999999999863 4488888888889999998 999998888888632 2246778888888889
Q ss_pred cCCHhHHHHHHHHHHhcCCCC
Q 038622 524 LGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 524 ~g~~~~A~~~~~~~~~~~~~~ 544 (587)
.|+..+|.+-++.+++..|.+
T Consensus 178 Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HhhHHHHHHhHHHHHhhCccc
Confidence 999999999999999999986
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.1 Score=41.77 Aligned_cols=88 Identities=10% Similarity=0.096 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc----------CCHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHH--
Q 038622 492 IGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSL----------GKEETLVELIDMVMDKAKFS-DRETSMVRGFLKIR-- 558 (587)
Q Consensus 492 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-- 558 (587)
++.|.+.++.....+ +.|.+.+..-+.++..+ .-+++|+.-++.++..+|+. ++.+.|+.+|..++
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 556666666655533 22666666555554433 23567888888899999987 67788888877655
Q ss_pred ---------HHHHHHHhcchhhhccCchhhh
Q 038622 559 ---------KFQDALATFGDILDSRMPRKTF 580 (587)
Q Consensus 559 ---------~~~~A~~~~~~~~~~~~~~~~~ 580 (587)
.|++|...|+++.+..|..+.+
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y 116 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPNNELY 116 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 4788888888888877665543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.01 E-value=1.1 Score=33.81 Aligned_cols=66 Identities=14% Similarity=0.067 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCC
Q 038622 475 ALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAK 542 (587)
Q Consensus 475 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 542 (587)
.......+..+...|+ -+.-.+++..+.+.+ .+++..+..++.+|.+.|+..++.++++++.+.+-
T Consensus 86 se~vD~ALd~lv~~~k-kDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 86 SEYVDLALDILVKQGK-KDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp -HHHHHHHHHHHHTT--HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHhcc-HHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3334445556667777 666667777766433 57788888888888888888888888888877664
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.3 Score=40.22 Aligned_cols=96 Identities=9% Similarity=-0.014 Sum_probs=58.3
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHH----
Q 038622 441 QAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDA--LTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSS---- 513 (587)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~---- 513 (587)
..+..++..|.+.|+.++|++.|.++.+....+.. ..+..++......++ +..+..++.++...--.+ +...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d-~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGD-WSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 46677888888888888888888888776433332 234566666777777 888888877776421111 2111
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHH
Q 038622 514 FYMLAEGLVSLGKEETLVELIDMV 537 (587)
Q Consensus 514 ~~~l~~~~~~~g~~~~A~~~~~~~ 537 (587)
-..-|-.+...|+|.+|-+.|-..
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHcc
Confidence 122233344566677666666544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.27 Score=38.05 Aligned_cols=91 Identities=18% Similarity=0.060 Sum_probs=58.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccC
Q 038622 448 QALFRRKRTTEAMRLFREMMEKADPPDAL-TYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLG 525 (587)
Q Consensus 448 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 525 (587)
..-...++.+++..++..+.-. .|+.. .-..-++.+...|+ |++|..+++...+.+ + .+..-..++.++.-.|
T Consensus 18 ~~aL~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~-w~eA~rvlr~l~~~~--~~~p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 18 MYALRSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGN-YDEAARILRELLSSA--GAPPYGKALLALCLNAKG 92 (153)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCC-HHHHHHHHHhhhccC--CCchHHHHHHHHHHHhcC
Confidence 3444578899999999988875 44333 33334555677888 999999999988743 3 3555566777777777
Q ss_pred CHhHHHHHHHHHHhcCCCC
Q 038622 526 KEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 526 ~~~~A~~~~~~~~~~~~~~ 544 (587)
+.+- ..+...+++.++..
T Consensus 93 Dp~W-r~~A~~~le~~~~~ 110 (153)
T TIGR02561 93 DAEW-HVHADEVLARDADA 110 (153)
T ss_pred ChHH-HHHHHHHHHhCCCH
Confidence 6542 23333444544444
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=94.73 E-value=5.7 Score=40.61 Aligned_cols=50 Identities=6% Similarity=-0.053 Sum_probs=31.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHH
Q 038622 412 IGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFR 464 (587)
Q Consensus 412 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 464 (587)
+..+...|....|...+..+... .+......++......|.++.++....
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 34455667777887777777663 244445555566666677666665544
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.57 Score=35.82 Aligned_cols=49 Identities=10% Similarity=0.101 Sum_probs=26.7
Q ss_pred CCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHH
Q 038622 436 IVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEK-ADPPDALTYKHVFRG 484 (587)
Q Consensus 436 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~ 484 (587)
..|+......++.+|+..|++..|+++.+...+. +++.+..+|..++.-
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3455555555566665556666666665555553 344445555555543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=94.69 E-value=3.4 Score=37.85 Aligned_cols=101 Identities=14% Similarity=0.222 Sum_probs=49.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCH
Q 038622 307 IDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDI 386 (587)
Q Consensus 307 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 386 (587)
+.-+...|+...|.++-.+.. -|+...|...+.+++..++|++-..+... .-++.-|..++.+|...|+.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 333444555555555443331 34555555566666666666555443221 11234455555556666666
Q ss_pred HHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHH
Q 038622 387 KRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKL 427 (587)
Q Consensus 387 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 427 (587)
.+|..+..++ + +..-+..|.+.|++.+|.+.
T Consensus 254 ~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 254 KEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHH
Confidence 5555555441 1 12334455555555555444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.081 Score=29.80 Aligned_cols=25 Identities=8% Similarity=0.177 Sum_probs=14.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 038622 443 YNPVIQALFRRKRTTEAMRLFREMM 467 (587)
Q Consensus 443 ~~~l~~~~~~~g~~~~A~~~~~~~~ 467 (587)
+..|+..|...|++++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666644
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.62 E-value=1.3 Score=38.38 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=21.2
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHhc
Q 038622 515 YMLAEGLVSLGKEETLVELIDMVMDK 540 (587)
Q Consensus 515 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 540 (587)
..++.++++.|+|.+|+...+.++..
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~E 154 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHE 154 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 35788899999999999988876643
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.041 Score=30.48 Aligned_cols=23 Identities=13% Similarity=0.390 Sum_probs=10.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHH
Q 038622 52 APDERTFTTLMQGLIEEGNLDGA 74 (587)
Q Consensus 52 ~~~~~~~~~l~~~~~~~g~~~~A 74 (587)
|.|+.+|..++..+...|++++|
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhh
Confidence 33444444444444444444444
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.72 Score=35.29 Aligned_cols=44 Identities=14% Similarity=0.133 Sum_probs=19.9
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCChHhHHHHH
Q 038622 404 DIVTYGTLIGGLCKAGRVEVASKLLRSIQMK-GIVLTPQAYNPVI 447 (587)
Q Consensus 404 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~ 447 (587)
+..++.+++.+|...|++..|.++++.+.+. +++.+...|..|+
T Consensus 51 t~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll 95 (126)
T PF12921_consen 51 TSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLL 95 (126)
T ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3344444444444445555555555444443 3333334444443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.59 Score=35.39 Aligned_cols=74 Identities=14% Similarity=0.218 Sum_probs=47.5
Q ss_pred CCCHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc
Q 038622 472 PPDALTYKHVFRGLCNGGG--PIGEAVDFVIEMLERGFLP--EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~--~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
.++..+...+.+++....+ +..+.+.+++..++.. +| +-+..+.|+-.+++.++|+.++++++.+++..|++..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 4455555556666654443 2556677777777522 34 3556666777777888888888888888887777643
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.7 Score=40.73 Aligned_cols=80 Identities=19% Similarity=0.241 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCChhhHH
Q 038622 55 ERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVS-----EGFNPDQFTYN 129 (587)
Q Consensus 55 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 129 (587)
..++..++..+...|+++.+...++++.... |.+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3466777778888888888888888888875 67788888888888888888888888887765 47777777776
Q ss_pred HHHHHH
Q 038622 130 TLVNGL 135 (587)
Q Consensus 130 ~l~~~~ 135 (587)
......
T Consensus 232 ~y~~~~ 237 (280)
T COG3629 232 LYEEIL 237 (280)
T ss_pred HHHHHh
Confidence 666663
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.1 Score=32.36 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=27.3
Q ss_pred HHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc
Q 038622 513 SFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 513 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
.++.++-.+++.|++++|++..+.+++..|.+..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 4567888889999999999999999999998744
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.23 E-value=2.2 Score=33.65 Aligned_cols=40 Identities=10% Similarity=0.078 Sum_probs=17.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 038622 62 MQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCK 102 (587)
Q Consensus 62 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 102 (587)
+..+.+.+.......+++.+...+ +.+....+.++..|++
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 333333444444444444444443 2334444444444443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.21 E-value=1.8 Score=32.74 Aligned_cols=58 Identities=22% Similarity=0.305 Sum_probs=26.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038622 412 IGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKA 470 (587)
Q Consensus 412 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 470 (587)
+..+..+|+-+.-.+++..+.+. -.+++.....++.+|.+.|+..++.+++.++-+.|
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 34444555555555555554431 23445555555555555555555555555555544
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.16 Score=28.00 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=13.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038622 442 AYNPVIQALFRRKRTTEAMRLFREMME 468 (587)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (587)
.|..++.++...|++++|++.|+++++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344455555555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=93.89 E-value=6.2 Score=37.70 Aligned_cols=179 Identities=13% Similarity=0.143 Sum_probs=108.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHH
Q 038622 332 SRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTL 411 (587)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 411 (587)
+.+......++..+..+..+.-...+..+++.-| .+...+..++++|... ..++-..+|+++.+..+. +...-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 4456667777788888888888888888888743 4666777888888877 457778888888876554 55555566
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCC-----hHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHH
Q 038622 412 IGGLCKAGRVEVASKLLRSIQMKGIVLT-----PQAYNPVIQALFRRKRTTEAMRLFREMMEK-ADPPDALTYKHVFRGL 485 (587)
Q Consensus 412 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~ 485 (587)
+..|.+ ++...+..+|.++...-++.. .+.|..+... -..+.+.-..+..+.... |...-...+..+..-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 666555 788888888887776522211 1233333321 134556666666655543 3223333444444445
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038622 486 CNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAE 519 (587)
Q Consensus 486 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 519 (587)
....+ +++|++++.-.++.+ ..|.-+...+..
T Consensus 216 s~~eN-~~eai~Ilk~il~~d-~k~~~ar~~~i~ 247 (711)
T COG1747 216 SENEN-WTEAIRILKHILEHD-EKDVWARKEIIE 247 (711)
T ss_pred ccccC-HHHHHHHHHHHhhhc-chhhhHHHHHHH
Confidence 55555 777877777777643 334444444443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.85 Score=40.21 Aligned_cols=80 Identities=14% Similarity=0.157 Sum_probs=68.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCcccH
Q 038622 89 TNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQ-----EGFDPDVFTY 163 (587)
Q Consensus 89 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 163 (587)
-..++..++..+...|+.+.+...++++.... |-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 34567788899999999999999999999885 77888999999999999999999999998876 4788887777
Q ss_pred HHHHHH
Q 038622 164 NSLISG 169 (587)
Q Consensus 164 ~~l~~~ 169 (587)
......
T Consensus 231 ~~y~~~ 236 (280)
T COG3629 231 ALYEEI 236 (280)
T ss_pred HHHHHH
Confidence 666665
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=93.72 E-value=4.5 Score=37.36 Aligned_cols=81 Identities=12% Similarity=0.009 Sum_probs=53.6
Q ss_pred hhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh---cCChHHHHHH
Q 038622 71 LDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCK---VGHVKQALEV 147 (587)
Q Consensus 71 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~ 147 (587)
.+.-+.+++++++.+ |.+...+..++..+.+..+.++..+-+++++... +.+...|...+..... .-.+.....+
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 345567777777775 5677777777777777777788788888887763 3456667766665443 2345666666
Q ss_pred HHHHHh
Q 038622 148 MDMMLQ 153 (587)
Q Consensus 148 ~~~~~~ 153 (587)
|.+.++
T Consensus 125 y~~~l~ 130 (321)
T PF08424_consen 125 YEKCLR 130 (321)
T ss_pred HHHHHH
Confidence 666554
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.60 E-value=3 Score=33.14 Aligned_cols=112 Identities=19% Similarity=0.068 Sum_probs=58.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCh-HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCC
Q 038622 413 GGLCKAGRVEVASKLLRSIQMKGIVLTP-QAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGP 491 (587)
Q Consensus 413 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 491 (587)
..-...++.+.+..++..+.-. .|.. ..-..-+..+...|+|.+|+++|+.+.+. .|....-..++..|....+
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~~~~- 92 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLALCLYALG- 92 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHHcC-
Confidence 3344567788888888777764 3333 33344556677788888888888887664 3333333333333333333
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHH
Q 038622 492 IGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVE 532 (587)
Q Consensus 492 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 532 (587)
-..=..+..++++. .+|+.+.. +...+....+...|..
T Consensus 93 D~~Wr~~A~evle~--~~d~~a~~-Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 93 DPSWRRYADEVLES--GADPDARA-LVRALLARADLEPAHE 130 (160)
T ss_pred ChHHHHHHHHHHhc--CCChHHHH-HHHHHHHhccccchhh
Confidence 13333344445553 24554444 3333333333333333
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.58 E-value=6.9 Score=37.18 Aligned_cols=109 Identities=16% Similarity=0.003 Sum_probs=59.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc---CCCCC-----hHhHHHHHHHHHhcCCHHHHHHHHHHHHh-------cCCCCC--
Q 038622 412 IGGLCKAGRVEVASKLLRSIQMK---GIVLT-----PQAYNPVIQALFRRKRTTEAMRLFREMME-------KADPPD-- 474 (587)
Q Consensus 412 ~~~~~~~~~~~~a~~~~~~~~~~---~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~-- 474 (587)
...+...|++.+|.+.+...--. |...+ -..|+.++....+.|.+..+..+|.++++ .|+.|.
T Consensus 247 sq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 247 SQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 34455566777776666443211 21112 12346666666666776666666666663 232221
Q ss_pred --------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038622 475 --------ALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLV 522 (587)
Q Consensus 475 --------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 522 (587)
-.....++-.+...|+ .-.|.+.|.++..- +..+|..|..|+.+|.
T Consensus 327 ~tls~nks~eilYNcG~~~Lh~gr-Pl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 327 FTLSQNKSMEILYNCGLLYLHSGR-PLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred eehhcccchhhHHhhhHHHHhcCC-cHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 1222334445566666 66777777766652 3456777777777665
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.23 Score=27.40 Aligned_cols=28 Identities=25% Similarity=0.370 Sum_probs=16.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038622 442 AYNPVIQALFRRKRTTEAMRLFREMMEK 469 (587)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (587)
.|..++.++...|++++|+..|+++++.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 4555566666666666666666666553
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.052 Score=47.98 Aligned_cols=121 Identities=18% Similarity=0.084 Sum_probs=63.1
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHH
Q 038622 416 CKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEA 495 (587)
Q Consensus 416 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A 495 (587)
...|.++.|++.+...+..++ +....+..-..++.+.+++..|++-+..++..+ +.....|..-..+....|+ |++|
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp-~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein-~Dsa~~ykfrg~A~rllg~-~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNP-PLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN-PDSAKGYKFRGYAERLLGN-WEEA 201 (377)
T ss_pred hcCcchhhhhcccccccccCC-chhhhcccccceeeeccCCchhhhhhhhhhccC-cccccccchhhHHHHHhhc-hHHH
Confidence 345666666666666665432 234455555566666666666666666666542 2223334444444455566 6666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcC
Q 038622 496 VDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKA 541 (587)
Q Consensus 496 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 541 (587)
...++.+.+.++.+....+ +-.+.-..+..++-...+++..+..
T Consensus 202 a~dl~~a~kld~dE~~~a~--lKeV~p~a~ki~e~~~k~er~~~e~ 245 (377)
T KOG1308|consen 202 AHDLALACKLDYDEANSAT--LKEVFPNAGKIEEHRRKYERAREER 245 (377)
T ss_pred HHHHHHHHhccccHHHHHH--HHHhccchhhhhhchhHHHHHHHHh
Confidence 6666666665444433322 3333444444455555555444433
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=93.17 E-value=8.3 Score=36.93 Aligned_cols=181 Identities=15% Similarity=0.139 Sum_probs=126.7
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 038622 297 ARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSL 376 (587)
Q Consensus 297 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 376 (587)
+.+...+..++..+...-...-...+..++...| .+...+..++++|..+ ..++-..+|+++++.... |...-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 5566777888888888888888889999998864 5777888999999988 557788999999886432 44444445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC--C---cchHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCChHhHHHHHHHH
Q 038622 377 LTYYCRAGDIKRAADIVQNMTSNGCEP--D---IVTYGTLIGGLCKAGRVEVASKLLRSIQMK-GIVLTPQAYNPVIQAL 450 (587)
Q Consensus 377 ~~~~~~~~~~~~A~~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 450 (587)
+..| ..++...+..+|.++...-++. + .+.|..+... -..+.+....+..++... |...-...+..+..-|
T Consensus 139 a~~y-Ekik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKY-EKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHH-HHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 5444 4488899999999888752221 1 1233333321 245788888888888765 3333345566666778
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038622 451 FRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGL 485 (587)
Q Consensus 451 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 485 (587)
....++.+|++++..+++.+ ..|...-..++..+
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 88899999999999999875 55555555555444
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.88 E-value=12 Score=38.20 Aligned_cols=175 Identities=17% Similarity=0.164 Sum_probs=83.0
Q ss_pred HHHHHHHHcCChhhHHHHHHhhccCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 038622 25 ILIKALCKAHQIRPAILMMEEMPGYGLAPD--ERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCK 102 (587)
Q Consensus 25 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 102 (587)
.-+..+.+..-++-|+.+-+.- +..++ .......+.-+.+.|++++|...|-+.+..- .++ .++.-|..
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~s-----~Vi~kfLd 409 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EPS-----EVIKKFLD 409 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-ChH-----HHHHHhcC
Confidence 3445555555666665544332 11222 1233334444556677777776666655431 111 23333444
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHH
Q 038622 103 EGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEI 182 (587)
Q Consensus 103 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 182 (587)
..+...-..+++.+.+.|+. +...-..|+.+|.+.++.++-.+..+... .|.. ..-....+..+.+.+-.++|..+
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHH
Confidence 44455555566666665533 33344556667777777666665554433 1110 11123344445555555555544
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHH
Q 038622 183 LNQMILRDCSPNTITYNTLISTLCKENQVEEATELARV 220 (587)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 220 (587)
-.+... +..... ..+-..+++++|++.+..
T Consensus 486 A~k~~~-----he~vl~---ille~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 486 ATKFKK-----HEWVLD---ILLEDLHNYEEALRYISS 515 (933)
T ss_pred HHHhcc-----CHHHHH---HHHHHhcCHHHHHHHHhc
Confidence 433221 222222 223345666666666554
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.18 Score=27.04 Aligned_cols=31 Identities=16% Similarity=0.343 Sum_probs=22.3
Q ss_pred HHHHHHHHHHccCCHhHHHHHHHHHHhcCCC
Q 038622 513 SFYMLAEGLVSLGKEETLVELIDMVMDKAKF 543 (587)
Q Consensus 513 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 543 (587)
.+..++.++...|++++|...++++++..|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4566777777777778887777777766553
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.74 E-value=4.4 Score=32.69 Aligned_cols=101 Identities=13% Similarity=0.235 Sum_probs=50.0
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038622 6 TAHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHG 85 (587)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 85 (587)
.+...+.+.+++|+...+..+++.+.+.|++.....+++.-. -+|.......+-.+ .+.+..+.++--.|..+-
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~V----i~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHV----IPDSKPLACQLLSL--GNQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc----cCCcHHHHHHHHHh--HccChHHHHHHHHHHHHh
Confidence 455555666777777777777777777776655544443322 33333333222111 123333444433333320
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 038622 86 CLVTNVTVNVLVHGFCKEGRIEDALSFIQEM 116 (587)
Q Consensus 86 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 116 (587)
...+..++..+...|++-+|+.+.+..
T Consensus 89 ----~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 89 ----GTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred ----hhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 112334555566666666666665553
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.079 Score=28.98 Aligned_cols=31 Identities=13% Similarity=0.318 Sum_probs=27.1
Q ss_pred chhhhhhhHHHHHHHHHHHHhcchhhhccCc
Q 038622 546 RETSMVRGFLKIRKFQDALATFGDILDSRMP 576 (587)
Q Consensus 546 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 576 (587)
+...++.++.+.|++++|+..|+++++..|.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3567888999999999999999999998764
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.64 E-value=1.9 Score=35.61 Aligned_cols=96 Identities=15% Similarity=0.044 Sum_probs=51.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCHHHH--HHH
Q 038622 407 TYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTP--QAYNPVIQALFRRKRTTEAMRLFREMMEKADP-PDALTY--KHV 481 (587)
Q Consensus 407 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~--~~l 481 (587)
.+..++..|.+.|+.+.|.+.+.++.+....+.. .++..+++.....+++..+...+.++...-.. .|...- ..+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4556666666677777777777666654322222 44556666666667777766666666553111 111111 111
Q ss_pred --HHHHHhCCCCHHHHHHHHHHHH
Q 038622 482 --FRGLCNGGGPIGEAVDFVIEML 503 (587)
Q Consensus 482 --~~~~~~~~~~~~~A~~~~~~~~ 503 (587)
+-.+...++ +.+|-+.|-...
T Consensus 118 ~~gL~~l~~r~-f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLANLAQRD-FKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHhch-HHHHHHHHHccC
Confidence 112234455 777777666654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.47 E-value=17 Score=38.88 Aligned_cols=19 Identities=32% Similarity=0.333 Sum_probs=10.0
Q ss_pred HHHHhccCCHHHHHHHHHH
Q 038622 202 ISTLCKENQVEEATELARV 220 (587)
Q Consensus 202 ~~~~~~~~~~~~a~~~~~~ 220 (587)
++-++..+++.+|..+.++
T Consensus 684 vr~~l~~~~y~~AF~~~Rk 702 (1265)
T KOG1920|consen 684 VRTLLDRLRYKEAFEVMRK 702 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555556666555443
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.53 Score=45.17 Aligned_cols=101 Identities=13% Similarity=0.056 Sum_probs=75.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 038622 444 NPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVS 523 (587)
Q Consensus 444 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 523 (587)
+..+-.....|+...|..++..+..............++..+...|- ...|-.++.+.+... ...+-+++.+++++..
T Consensus 611 n~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~-~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~ 688 (886)
T KOG4507|consen 611 NEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGL-HLDATKLLLQALAIN-SSEPLTFLSLGNAYLA 688 (886)
T ss_pred ecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhh-hccHHHHHHHHHhhc-ccCchHHHhcchhHHH
Confidence 33333344578999999999888765322233445667777777777 888989998888753 4467778889999999
Q ss_pred cCCHhHHHHHHHHHHhcCCCCCc
Q 038622 524 LGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 524 ~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
..+.+.|++.++.+++..|+...
T Consensus 689 l~~i~~a~~~~~~a~~~~~~~~~ 711 (886)
T KOG4507|consen 689 LKNISGALEAFRQALKLTTKCPE 711 (886)
T ss_pred HhhhHHHHHHHHHHHhcCCCChh
Confidence 99999999999999999988743
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=92.41 E-value=2.8 Score=35.79 Aligned_cols=94 Identities=19% Similarity=0.190 Sum_probs=61.9
Q ss_pred HhcCCHHHHHHHHHHHHhc----CCCCC--HHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCCCC-----CHH
Q 038622 451 FRRKRTTEAMRLFREMMEK----ADPPD--ALTYKHVFRGLCNGGGPIG-------EAVDFVIEMLERGFLP-----EFS 512 (587)
Q Consensus 451 ~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~-------~A~~~~~~~~~~~~~p-----~~~ 512 (587)
.....+++|++.|.-++-. +.++. ...+..+++.|...|+ .+ .|.+.|+++.+..-.| +..
T Consensus 88 ~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~-~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 88 SGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGD-EENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCC-HHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence 3445677777766655532 22333 3345566777766666 33 4566666666543232 245
Q ss_pred HHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 513 SFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 513 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
+.+.+|.+..+.|++++|.+++.+++.....+.
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 667899999999999999999999998877654
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=92.39 E-value=1.5 Score=41.07 Aligned_cols=122 Identities=12% Similarity=-0.023 Sum_probs=74.0
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 038622 312 KLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAAD 391 (587)
Q Consensus 312 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 391 (587)
..|++..|.+-+...+... +.++.........+...|+++.+...+..+... +.....+...++......|+++.|..
T Consensus 301 ~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHH
Confidence 4566666655554444332 334444444445566678888877777665543 33345566677777777788888888
Q ss_pred HHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038622 392 IVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGI 436 (587)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 436 (587)
.-..|....+. ++++....+..-...|-++++...|+++...++
T Consensus 379 ~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 379 TAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred HHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 77777765554 444444333444456777788877777776543
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=92.38 E-value=8.9 Score=35.46 Aligned_cols=108 Identities=8% Similarity=-0.005 Sum_probs=80.0
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHHcCC------------hhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 038622 8 HADMVSRGIKPDVSTFNILIKALCKAHQ------------IRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGAL 75 (587)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 75 (587)
+...++.+ |-|..+|-.+++.--..-. .+.-+.+++++++.+ +.+...+..++..+.+..+.+...
T Consensus 8 l~~~v~~~-P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 8 LNRRVREN-PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHhC-cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 44555555 7789999998866444322 345577889988885 788889999999999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 038622 76 RIREQMVEHGCLVTNVTVNVLVHGFCK---EGRIEDALSFIQEMVS 118 (587)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~ 118 (587)
+.++.++... +.+...|...+..... .-.++....+|.+.++
T Consensus 86 ~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~ 130 (321)
T PF08424_consen 86 KKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLR 130 (321)
T ss_pred HHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 9999999885 5577888877775544 2346677777766654
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=92.35 E-value=15 Score=37.77 Aligned_cols=49 Identities=22% Similarity=0.147 Sum_probs=28.8
Q ss_pred HhcCCHHHHHHHHHHHHHcCC-CCC-------HhhHHHHHHHHHhcCCHHHHHHHHH
Q 038622 346 CKSRRVEDAAQLMDQMIMEGL-KPD-------KFTYNSLLTYYCRAGDIKRAADIVQ 394 (587)
Q Consensus 346 ~~~~~~~~A~~~~~~~~~~~~-~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~ 394 (587)
.-.+++..|....+.+..... .|+ +..+...+-.+...|+.+.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345778778887777765311 111 2223333344556688888888887
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=92.30 E-value=4.6 Score=31.79 Aligned_cols=38 Identities=5% Similarity=0.002 Sum_probs=15.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHH
Q 038622 378 TYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLC 416 (587)
Q Consensus 378 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 416 (587)
..+...+.+.....+++.+...+. .+....+.++..|+
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~ 52 (140)
T smart00299 15 ELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYA 52 (140)
T ss_pred HHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHH
Confidence 333333444444444444444332 23334444444444
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=92.24 E-value=1.9 Score=35.68 Aligned_cols=75 Identities=15% Similarity=0.035 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHccCCHhHHH
Q 038622 455 RTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERG---FLPEFSSFYMLAEGLVSLGKEETLV 531 (587)
Q Consensus 455 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~ 531 (587)
.-++|.+.|-++-..+.-.++.....++ .++...+ .++++.++.++++.. -.++++++..|+.++.+.|+++.|-
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD-~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALA-TYYTKRD-PEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccC-HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3455666666666554333444333333 3444444 677777777777531 1236777777777777777777764
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.37 Score=28.06 Aligned_cols=30 Identities=23% Similarity=0.354 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHHhcC
Q 038622 512 SSFYMLAEGLVSLGKEETLVELIDMVMDKA 541 (587)
Q Consensus 512 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 541 (587)
.++..|+.+|...|++++|..+++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 456788889999999999999998887643
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.11 E-value=9.2 Score=34.86 Aligned_cols=150 Identities=15% Similarity=0.081 Sum_probs=91.6
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----c
Q 038622 312 KLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCK----SRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCR----A 383 (587)
Q Consensus 312 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 383 (587)
..+++..+...+......+ +......+...|.. ..+...|..+|..+...| .......+...+.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcc
Confidence 4567777887777776543 22344444444443 345777888888766654 23334445555554 3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcC-------ChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh----
Q 038622 384 GDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAG-------RVEVASKLLRSIQMKGIVLTPQAYNPVIQALFR---- 452 (587)
Q Consensus 384 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 452 (587)
.|..+|..+++++.+.|..+.......+...|..-. +...|...+.++...+ +......++..|..
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCC
Confidence 477888888888887765432223455555554431 2336777777777654 55566666666544
Q ss_pred cCCHHHHHHHHHHHHhcC
Q 038622 453 RKRTTEAMRLFREMMEKA 470 (587)
Q Consensus 453 ~g~~~~A~~~~~~~~~~~ 470 (587)
..++++|...|.++.+.|
T Consensus 204 ~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred CcCHHHHHHHHHHHHHCC
Confidence 347788888888888876
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=91.98 E-value=0.21 Score=25.57 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=17.6
Q ss_pred HHHHHHHHHHccCCHhHHHHHHH
Q 038622 513 SFYMLAEGLVSLGKEETLVELID 535 (587)
Q Consensus 513 ~~~~l~~~~~~~g~~~~A~~~~~ 535 (587)
+...++.++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45667888888888888887765
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.78 E-value=13 Score=35.71 Aligned_cols=428 Identities=9% Similarity=0.043 Sum_probs=195.1
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh-cCCHHHHHHHHHH
Q 038622 107 EDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCK-LGEVEEAVEILNQ 185 (587)
Q Consensus 107 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~ 185 (587)
.....+++.+... .+.|+..|...+..+.+.+.+.+...+|.+|+... +.++..|...+..... ..+.+.|..+|..
T Consensus 88 ~rIv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflr 165 (568)
T KOG2396|consen 88 NRIVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLR 165 (568)
T ss_pred HHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHH
Confidence 3445556666554 35588888888888777777888888888888863 2245555444443333 3348888888888
Q ss_pred HHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHh---------hHHHHH---------------HHHH
Q 038622 186 MILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVC---------TFNSLI---------------QGLC 241 (587)
Q Consensus 186 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~l~---------------~~~~ 241 (587)
.+..+ +.++..|....+.-.. .+..+..+-...|...+.. .+.... ....
T Consensus 166 gLR~n-pdsp~Lw~eyfrmEL~-----~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~ 239 (568)
T KOG2396|consen 166 GLRFN-PDSPKLWKEYFRMELM-----YAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAE 239 (568)
T ss_pred HhhcC-CCChHHHHHHHHHHHH-----HHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHH
Confidence 88775 4455555444332211 0111110000000000000 000000 0000
Q ss_pred hcCChHHH-HHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 038622 242 LTSNFDVA-MELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAE 320 (587)
Q Consensus 242 ~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 320 (587)
......+- ..+.+.+. .+.+.++.++..+.. +.++-.......+.. ..........+-+...
T Consensus 240 ~~d~~kel~k~i~d~~~-~~~~~np~~~~~laq------------r~l~i~~~tdl~~~~----~~~~~~~~~~k~s~~~ 302 (568)
T KOG2396|consen 240 KFDFLKELQKNIIDDLQ-SKAPDNPLLWDDLAQ------------RELEILSQTDLQHTD----NQAKAVEVGSKESRCC 302 (568)
T ss_pred HHHHHHHHHHHHHHHHh-ccCCCCCccHHHHHH------------HHHHHHHHhhccchh----hhhhchhcchhHHHHH
Confidence 00000000 01111111 122334444443332 111111111000100 0001111111222333
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHc-CCCCC-HhhHHHHHHHHHhcCCHHH-HHH
Q 038622 321 EIFDEMEIQGISRNSVTYNTLIDGLCKS------RRVEDAAQLMDQMIME-GLKPD-KFTYNSLLTYYCRAGDIKR-AAD 391 (587)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~A~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~-A~~ 391 (587)
.+|+..... -++...|...+..|... .....-..+++..... +..++ ...|..+...+........ |..
T Consensus 303 ~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~ 380 (568)
T KOG2396|consen 303 AVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVK 380 (568)
T ss_pred HHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHH
Confidence 556555442 24445555555544322 2344455566665543 22222 3345555555554443332 333
Q ss_pred HHHHHHHCCCCCCcchHHHHHHHHHhc-CChHHHH-HHHHHHHHcCCCCChHhHHHHHHHHHhcCC-HHHHH--HHHHHH
Q 038622 392 IVQNMTSNGCEPDIVTYGTLIGGLCKA-GRVEVAS-KLLRSIQMKGIVLTPQAYNPVIQALFRRKR-TTEAM--RLFREM 466 (587)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~--~~~~~~ 466 (587)
+..+. +..+...|..-+...... .+++--. +.+..+...-..+....|.... .|+ .+... .++..+
T Consensus 381 l~~e~----f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~ 451 (568)
T KOG2396|consen 381 LTTEL----FRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISAL 451 (568)
T ss_pred hhHHH----hcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHH
Confidence 33232 334555555544444422 2222221 1222232211111112222222 333 22221 233333
Q ss_pred HhcCCCCCHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHc--cCCHhHHHHHHHHHHhcCC
Q 038622 467 MEKADPPDALTY-KHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVS--LGKEETLVELIDMVMDKAK 542 (587)
Q Consensus 467 ~~~~~~~~~~~~-~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~ 542 (587)
...+ .|+..++ ..++..+.+.|. +.+|...+.++.. ++| +...+..++..-.. .-+...++.+|+.++..-.
T Consensus 452 ~s~~-~~~~~tl~s~~l~~~~e~~~-~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg 527 (568)
T KOG2396|consen 452 LSVI-GADSVTLKSKYLDWAYESGG-YKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG 527 (568)
T ss_pred HHhc-CCceeehhHHHHHHHHHhcc-hHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC
Confidence 3333 4554444 456667788888 9999999999998 445 77777777654322 2237889999999876555
Q ss_pred -CCCchhhhhhhHHHHHHHHHHHHhcchhhhcc
Q 038622 543 -FSDRETSMVRGFLKIRKFQDALATFGDILDSR 574 (587)
Q Consensus 543 -~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 574 (587)
+++.|......-...|.-+.+-..+.++....
T Consensus 528 ~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ktl 560 (568)
T KOG2396|consen 528 ADSDLWMDYMKEELPLGRPENCGQIYWRAMKTL 560 (568)
T ss_pred CChHHHHHHHHhhccCCCcccccHHHHHHHHhh
Confidence 33556655555455666655555555555433
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.72 E-value=17 Score=37.24 Aligned_cols=176 Identities=16% Similarity=0.185 Sum_probs=83.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 038622 95 VLVHGFCKEGRIEDALSFIQEMVSEGFNPD--QFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCK 172 (587)
Q Consensus 95 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 172 (587)
.-+..+.+...++-|+.+-+. .+.+++ .......+..+.+.|++++|...|-+.+.. +.| ..++.-|..
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLd 409 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLD 409 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcC
Confidence 344455555556666554332 222222 123444455555667777776666555432 111 123444444
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 038622 173 LGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMEL 252 (587)
Q Consensus 173 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 252 (587)
......-..+++.+.+.|+. +......|+.+|.+.++.++-.+..+... .|.. ..-....+..+.+.+-.++|..+
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHH
Confidence 44555555666666666644 44555566677777777666555443322 1111 01123344444444555555444
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 038622 253 FQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEM 291 (587)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 291 (587)
-.+... +...... .+-..+++++|++++..+
T Consensus 486 A~k~~~-----he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 486 ATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 333221 1222222 223445666666666544
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.71 E-value=21 Score=38.27 Aligned_cols=24 Identities=8% Similarity=0.288 Sum_probs=10.8
Q ss_pred HHHHHHHHhcC--ChhHHHHHHHHHH
Q 038622 59 TTLMQGLIEEG--NLDGALRIREQMV 82 (587)
Q Consensus 59 ~~l~~~~~~~g--~~~~A~~~~~~~~ 82 (587)
..++.++.+.+ ..+.|+.......
T Consensus 794 ~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 794 LFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 34445555544 4444444444333
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.70 E-value=32 Score=40.21 Aligned_cols=63 Identities=14% Similarity=0.076 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcC
Q 038622 475 ALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKA 541 (587)
Q Consensus 475 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 541 (587)
..+|...++.....|. ++.|...+-++.+.+ -+.++.-.+..+++.|+...|+.+++..++..
T Consensus 1670 ge~wLqsAriaR~aG~-~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGH-LQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHHhccc-HHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 4566667776666777 777777777776632 34556667777777888888888887777443
|
|
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.35 E-value=19 Score=36.93 Aligned_cols=99 Identities=13% Similarity=0.104 Sum_probs=63.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 038622 52 APDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGF---CKEGRIEDALSFIQEMVSEGFNPDQFTY 128 (587)
Q Consensus 52 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 128 (587)
.-+...+..++..+...|++++....-..|... .|.++..|...+.-. ...++...+...|++.+.. .-++..|
T Consensus 110 ~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~-~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~d--y~~v~iw 186 (881)
T KOG0128|consen 110 SYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEI-APLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGD--YNSVPIW 186 (881)
T ss_pred ccchHHHHHHHHHHHHhcchHHHHHHHHHHHHh-cCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcc--cccchHH
Confidence 345556677777788888888877777777665 366777776665532 2346677777888877765 3344455
Q ss_pred HHHHHHHHh-------cCChHHHHHHHHHHHh
Q 038622 129 NTLVNGLCK-------VGHVKQALEVMDMMLQ 153 (587)
Q Consensus 129 ~~l~~~~~~-------~~~~~~a~~~~~~~~~ 153 (587)
...+..... .++++..+.+|.+++.
T Consensus 187 ~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~ 218 (881)
T KOG0128|consen 187 EEVVNYLVGFGNVAKKSEDYKKERSVFERALR 218 (881)
T ss_pred HHHHHHHHhccccccccccchhhhHHHHHHHh
Confidence 555544433 3556677777777665
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=91.20 E-value=0.49 Score=28.00 Aligned_cols=28 Identities=25% Similarity=0.429 Sum_probs=23.9
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHhcCC
Q 038622 515 YMLAEGLVSLGKEETLVELIDMVMDKAK 542 (587)
Q Consensus 515 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 542 (587)
..|+.+|..+|+.+.|+.+++.++..+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 4689999999999999999999996443
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.14 E-value=1.2 Score=37.61 Aligned_cols=80 Identities=14% Similarity=0.054 Sum_probs=35.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCCh-HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhCCCCHHHH
Q 038622 418 AGRVEVASKLLRSIQMKGIVLTP-QAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDAL-TYKHVFRGLCNGGGPIGEA 495 (587)
Q Consensus 418 ~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~A 495 (587)
..+++.|+..|.+.+.. .|+. .-|..-+.++.+..+++.+..--.++++. .|+.. ....++.......+ +++|
T Consensus 23 ~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~-~~ea 97 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKG-YDEA 97 (284)
T ss_pred hhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcc-ccHH
Confidence 33455555555555442 2333 23334444455555555555555555543 23322 22223333333333 5555
Q ss_pred HHHHHHH
Q 038622 496 VDFVIEM 502 (587)
Q Consensus 496 ~~~~~~~ 502 (587)
+..+.++
T Consensus 98 I~~Lqra 104 (284)
T KOG4642|consen 98 IKVLQRA 104 (284)
T ss_pred HHHHHHH
Confidence 5555555
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.11 E-value=9.6 Score=33.08 Aligned_cols=60 Identities=10% Similarity=0.017 Sum_probs=31.1
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCC-----------CHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038622 199 NTLISTLCKENQVEEATELARVLTSKGILP-----------DVCTFNSLIQGLCLTSNFDVAMELFQEMKT 258 (587)
Q Consensus 199 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 258 (587)
..|+..|...+.+.+...+++++...-... -...|..-+..|..+.+-..-..+|++.+.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalh 219 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALH 219 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHH
Confidence 456666666666666666666665421000 112333444455555555555566665543
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.10 E-value=2 Score=38.11 Aligned_cols=64 Identities=11% Similarity=0.025 Sum_probs=50.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc
Q 038622 480 HVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 480 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
.+-.++.+.++ ++.|.+..+.++. +.| ++.-+.-.|-+|.+.|.+..|..-++..++..|+.+.
T Consensus 186 nLK~~~~~~~~-~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 186 TLKAALMEEKQ-MELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHcCc-HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 45556677777 8888888888887 456 6777777888888888888888888888888887654
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.00 E-value=0.32 Score=40.85 Aligned_cols=89 Identities=12% Similarity=0.094 Sum_probs=70.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcc
Q 038622 447 IQALFRRKRTTEAMRLFREMMEKADPPDA-LTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSL 524 (587)
Q Consensus 447 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 524 (587)
+..|....++..|+..|.+++.. .|.. ..|..-+-.+.+..+ ++.+..--.++++ +.| .....+.++..+...
T Consensus 17 gnk~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~-~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s 91 (284)
T KOG4642|consen 17 GNKCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKH-WEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQS 91 (284)
T ss_pred cccccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhh-hhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhh
Confidence 45566677899999999999985 4554 555566666777777 9999999999998 567 466778899999999
Q ss_pred CCHhHHHHHHHHHHhc
Q 038622 525 GKEETLVELIDMVMDK 540 (587)
Q Consensus 525 g~~~~A~~~~~~~~~~ 540 (587)
..+++|+..+.++...
T Consensus 92 ~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 92 KGYDEAIKVLQRAYSL 107 (284)
T ss_pred ccccHHHHHHHHHHHH
Confidence 9999999999998543
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=90.78 E-value=22 Score=36.60 Aligned_cols=190 Identities=14% Similarity=0.006 Sum_probs=95.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC-CCC-------cchHHHHHHHHHhcCChHHHHHHHH--------HHHHcCCCCChHhH
Q 038622 380 YCRAGDIKRAADIVQNMTSNGC-EPD-------IVTYGTLIGGLCKAGRVEVASKLLR--------SIQMKGIVLTPQAY 443 (587)
Q Consensus 380 ~~~~~~~~~A~~~~~~~~~~~~-~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~ 443 (587)
.+-.+++..|...++.+..... .|+ +.++...+-.+-..|+.+.|...|. .....+...+..++
T Consensus 371 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~il 450 (608)
T PF10345_consen 371 NFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYIL 450 (608)
T ss_pred HHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHH
Confidence 3567889999999998876411 111 2223333444456799999999998 33333333222222
Q ss_pred H--HHHHHHHhcCC--HHH--HHHHHHHHHhc-CCCC--CHHHHHHH-HHHHHhCCC-CHHHHHHHHHHHHHcC--CCCC
Q 038622 444 N--PVIQALFRRKR--TTE--AMRLFREMMEK-ADPP--DALTYKHV-FRGLCNGGG-PIGEAVDFVIEMLERG--FLPE 510 (587)
Q Consensus 444 ~--~l~~~~~~~g~--~~~--A~~~~~~~~~~-~~~~--~~~~~~~l-~~~~~~~~~-~~~~A~~~~~~~~~~~--~~p~ 510 (587)
. +++..+...+. ..+ ...+++.+... .-.| +..++..+ ...+..... ...++...+...++.- ...+
T Consensus 451 a~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n 530 (608)
T PF10345_consen 451 AALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGN 530 (608)
T ss_pred HHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhcc
Confidence 1 22333333333 222 55666655442 1122 22333333 222221111 1346777776665421 1112
Q ss_pred ----HHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC---C--chhhhh-----hhHHHHHHHHHHHHhcchh
Q 038622 511 ----FSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS---D--RETSMV-----RGFLKIRKFQDALATFGDI 570 (587)
Q Consensus 511 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~--~~~~~~-----~~~~~~~~~~~A~~~~~~~ 570 (587)
.-++..++..+. .|+..+.......+....... . .|..+. ..+-..|+.++|.....+.
T Consensus 531 ~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~ 603 (608)
T PF10345_consen 531 SQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQL 603 (608)
T ss_pred chHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 122334555555 788888777777766544333 2 142222 2255667777777666554
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.76 E-value=0.67 Score=43.48 Aligned_cols=97 Identities=14% Similarity=0.175 Sum_probs=65.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccC
Q 038622 447 IQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLG 525 (587)
Q Consensus 447 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 525 (587)
+......+.++.|+.+|.++++.+ +.....+..-..++.+.+. +..|+.-+.++++ ..| -...|..-+.++...+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ld-pnca~~~anRa~a~lK~e~-~~~Al~Da~kaie--~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELD-PNCAIYFANRALAHLKVES-FGGALHDALKAIE--LDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcC-Ccceeeechhhhhheeech-hhhHHHHHHhhhh--cCchhhheeeeccHHHHhHH
Confidence 344556677788888888887753 2233334344456667777 7777777777777 346 4667777777777788
Q ss_pred CHhHHHHHHHHHHhcCCCCCch
Q 038622 526 KEETLVELIDMVMDKAKFSDRE 547 (587)
Q Consensus 526 ~~~~A~~~~~~~~~~~~~~~~~ 547 (587)
++.+|...|+......|.....
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~ 108 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDA 108 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHH
Confidence 8888888888877777766443
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.68 E-value=0.64 Score=43.62 Aligned_cols=97 Identities=10% Similarity=-0.008 Sum_probs=75.1
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc-hhhhhhhHHHHHH
Q 038622 482 FRGLCNGGGPIGEAVDFVIEMLERGFLPE-FSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR-ETSMVRGFLKIRK 559 (587)
Q Consensus 482 ~~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 559 (587)
+......+. ++.|+.+|.++++ +.|+ ...+..-+.++.+.+++..|+.-+.++++.+|...- +..-+.++...+.
T Consensus 11 an~~l~~~~-fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKV-FDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred Hhhhcccch-HHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 444556677 9999999999999 5685 445566678999999999999999999999987543 4445566677888
Q ss_pred HHHHHHhcchhhhccCchhhhh
Q 038622 560 FQDALATFGDILDSRMPRKTFR 581 (587)
Q Consensus 560 ~~~A~~~~~~~~~~~~~~~~~~ 581 (587)
+.+|+..|+++....+....++
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~ 109 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDAT 109 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHH
Confidence 8888888888887775554443
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=90.52 E-value=4.5 Score=33.57 Aligned_cols=75 Identities=17% Similarity=0.050 Sum_probs=55.2
Q ss_pred ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCChhhHHHHHHHHHhcCChHHHH
Q 038622 70 NLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSE---GFNPDQFTYNTLVNGLCKVGHVKQAL 145 (587)
Q Consensus 70 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~ 145 (587)
.-+.|++.|-++...+.-.++.....|+..|. ..+.++++.++.++++. +-.+|+..+..|+..+.+.|+++.|-
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 34567777877777664445556666665555 67889999999888764 22567788999999999999988874
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.50 E-value=13 Score=33.69 Aligned_cols=47 Identities=17% Similarity=0.312 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHh--c----CChHHHHHHHHHHHhC
Q 038622 108 DALSFIQEMVSEGFNPDQFTYNTLVNGLCK--V----GHVKQALEVMDMMLQE 154 (587)
Q Consensus 108 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~a~~~~~~~~~~ 154 (587)
+.+.+++.+.+.|+..+..++.+....... . .....|.++|+.|.+.
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 445566666666666665444432222222 1 1244566777777665
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=90.22 E-value=16 Score=34.28 Aligned_cols=188 Identities=15% Similarity=0.037 Sum_probs=103.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCC----cchHHHHHHHHHhcCChH
Q 038622 348 SRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYY-CRAGDIKRAADIVQNMTSNGCEPD----IVTYGTLIGGLCKAGRVE 422 (587)
Q Consensus 348 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~ 422 (587)
.|+.+++.+.+..+.....++....+..|+.+- ....++..|+.+|+...-. -|. ...+..-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 588888888888877655555666666666543 4456888888888877653 232 223334445556778888
Q ss_pred HHHHHHHHHHHcC-CCCCh-HhHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhCCCCHHHHHHHH
Q 038622 423 VASKLLRSIQMKG-IVLTP-QAYNPVIQALFRRKRTTEAMRLFREMMEK-ADPPDALTYKHVFRGLCNGGGPIGEAVDFV 499 (587)
Q Consensus 423 ~a~~~~~~~~~~~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~ 499 (587)
++..+-......- ..|-. ..+..+.....+.++-..- ..+..++.. +.......|..+...-...|+ .+-|...-
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk-~~lA~~As 280 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVEILSFMDPERQRELYLRIARAALIDGK-TELARFAS 280 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccH-HHHHHHHHhcCchhHHHHHHHHHHHHHHcCc-HHHHHHHH
Confidence 8777666655541 11111 2333444444444432222 224445443 212224466677777777888 88888888
Q ss_pred HHHHHcCCCCC-HHHHHHHHH--HHHccCCHhHHHHHHHHHHh
Q 038622 500 IEMLERGFLPE-FSSFYMLAE--GLVSLGKEETLVELIDMVMD 539 (587)
Q Consensus 500 ~~~~~~~~~p~-~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~ 539 (587)
++++...-..+ ......|.. .-.-..++++|.+.+..+..
T Consensus 281 ~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~ 323 (421)
T PRK12798 281 ERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDR 323 (421)
T ss_pred HHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCCh
Confidence 88876421111 111122222 22334556666666665443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=90.11 E-value=0.89 Score=24.90 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=17.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038622 442 AYNPVIQALFRRKRTTEAMRLFREMME 468 (587)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (587)
+|..++..+...|++++|...|+++++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566666666666666666666665
|
... |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=89.77 E-value=15 Score=33.14 Aligned_cols=127 Identities=18% Similarity=0.145 Sum_probs=63.7
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038622 404 DIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRK-RTTEAMRLFREMMEKADPPDALTYKHVF 482 (587)
Q Consensus 404 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 482 (587)
+..+-...+.++...++ +.+...+-.+.+ .++.......+.++...+ ....+...+..++. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 33444444555555544 345555555544 223334344444444332 23455555555553 33444444555
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 483 RGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 483 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
.++.+.+. ..|+..+-+.++.+ + .....+.++...|.. +|...+.++.+..++..
T Consensus 214 ~aLg~~~~--~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d~~ 268 (280)
T PRK09687 214 IGLALRKD--KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYKFDDNE 268 (280)
T ss_pred HHHHccCC--hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCCChh
Confidence 55555554 55666666665422 2 233455556666653 56666666666555443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.75 E-value=8.4 Score=37.72 Aligned_cols=150 Identities=17% Similarity=0.107 Sum_probs=75.6
Q ss_pred HHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 038622 31 CKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDAL 110 (587)
Q Consensus 31 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 110 (587)
.-.|+++.|..++..+.+ ..-..++..+.++|-.++|+++ .+++.- -.....+.|+++.|.
T Consensus 597 vmrrd~~~a~~vLp~I~k-------~~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~ 657 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPK-------EIRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAF 657 (794)
T ss_pred hhhccccccccccccCch-------hhhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHH
Confidence 345666666554444431 1233444455555655555543 112211 112335566677666
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038622 111 SFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRD 190 (587)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 190 (587)
++..+.. +..-|..|..+....+++..|.+.|..... +..|+-.+...|+-+....+-....+.|
T Consensus 658 ~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g 722 (794)
T KOG0276|consen 658 DLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG 722 (794)
T ss_pred HHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence 6554432 344567777777777777777776665543 2345555555666554444444433333
Q ss_pred CCCChhhHHHHHHHHhccCCHHHHHHHHHH
Q 038622 191 CSPNTITYNTLISTLCKENQVEEATELARV 220 (587)
Q Consensus 191 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 220 (587)
. .+....++...|+++++.+++..
T Consensus 723 -~-----~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 723 -K-----NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred -c-----cchHHHHHHHcCCHHHHHHHHHh
Confidence 1 11223345556666666665543
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=89.40 E-value=0.95 Score=26.23 Aligned_cols=27 Identities=33% Similarity=0.416 Sum_probs=16.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038622 442 AYNPVIQALFRRKRTTEAMRLFREMME 468 (587)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (587)
+++.++..|...|++++|..++++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 455666666666666666666666654
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=89.33 E-value=30 Score=36.01 Aligned_cols=227 Identities=13% Similarity=0.023 Sum_probs=117.6
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCH----H---hHHHH-HHHHHccCChHHHHHHHHHHHHCC----CCCCHHHHHHH
Q 038622 239 GLCLTSNFDVAMELFQEMKTKGCQPDE----F---TYNML-IDSLCSRGMLEEALKLLKEMESSG----CARNVVTYNTL 306 (587)
Q Consensus 239 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----~---~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l 306 (587)
......++.+|..+..++...-..|+. . .+..+ +......|++++|+++.+.....- ..+.......+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 344567888888888877653212221 1 22222 234456788999998888776541 12334456667
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHH---HHHHH--HHHHHhcCC--HHHHHHHHHHHHHcC--CCC----CHhhH
Q 038622 307 IDGFCKLKRIEEAEEIFDEMEIQGISRNSV---TYNTL--IDGLCKSRR--VEDAAQLMDQMIMEG--LKP----DKFTY 373 (587)
Q Consensus 307 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l--~~~~~~~~~--~~~A~~~~~~~~~~~--~~~----~~~~~ 373 (587)
+.+..-.|++++|..+..+..+..-.-+.. .|..+ ...+...|+ +.+....+....... -.| -..+.
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 778888899999998887765432112222 22222 233455663 233333333333210 011 12233
Q ss_pred HHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCcc--hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC----ChHhHHHH
Q 038622 374 NSLLTYYCRA-GDIKRAADIVQNMTSNGCEPDIV--TYGTLIGGLCKAGRVEVASKLLRSIQMKGIVL----TPQAYNPV 446 (587)
Q Consensus 374 ~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l 446 (587)
..+..++.+. +...++..-++-.......|-.. .+..|+.+....|+.++|...+.++......+ +..+....
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 3444444441 12222222222222222222211 22367788888999999999988887652222 21222222
Q ss_pred HH--HHHhcCCHHHHHHHHHH
Q 038622 447 IQ--ALFRRKRTTEAMRLFRE 465 (587)
Q Consensus 447 ~~--~~~~~g~~~~A~~~~~~ 465 (587)
+. .....|+..+|.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 22 23457888888777666
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=89.26 E-value=2.5 Score=40.93 Aligned_cols=89 Identities=19% Similarity=0.122 Sum_probs=50.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHH
Q 038622 380 YCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEA 459 (587)
Q Consensus 380 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 459 (587)
+...|+...|...+..+....+.........|+......|-...|..++.+.+... ...+.++..+++++....+.+.|
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHH
Confidence 34456666666666665543222222334455666666666666666666555543 22344555666666666666666
Q ss_pred HHHHHHHHhc
Q 038622 460 MRLFREMMEK 469 (587)
Q Consensus 460 ~~~~~~~~~~ 469 (587)
++.|+++.+.
T Consensus 696 ~~~~~~a~~~ 705 (886)
T KOG4507|consen 696 LEAFRQALKL 705 (886)
T ss_pred HHHHHHHHhc
Confidence 6666666665
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=88.87 E-value=21 Score=33.62 Aligned_cols=97 Identities=21% Similarity=0.177 Sum_probs=62.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC------CCCCHHHHHHH
Q 038622 444 NPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERG------FLPEFSSFYML 517 (587)
Q Consensus 444 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~------~~p~~~~~~~l 517 (587)
...+..+.+.|-+..|.++.+-+...+...|+......+..++-..++++--+++++...... .-|+. ....
T Consensus 107 ~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~--a~S~ 184 (360)
T PF04910_consen 107 FRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNF--AFSI 184 (360)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccH--HHHH
Confidence 345567778888999999988888876333777777777777655555777777777655410 12332 3334
Q ss_pred HHHHHccCCH---------------hHHHHHHHHHHhcCC
Q 038622 518 AEGLVSLGKE---------------ETLVELIDMVMDKAK 542 (587)
Q Consensus 518 ~~~~~~~g~~---------------~~A~~~~~~~~~~~~ 542 (587)
+-++...++. +.|...+.+++..-|
T Consensus 185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 4445555555 777777776665444
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.66 E-value=23 Score=33.88 Aligned_cols=160 Identities=13% Similarity=-0.024 Sum_probs=85.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcC-CCCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhH--H
Q 038622 306 LIDGFCKLKRIEEAEEIFDEMEIQG-ISRN--------SVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTY--N 374 (587)
Q Consensus 306 l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~ 374 (587)
++.+-.-.|++.+|++-...|...- ..|. ......++..+...+.++.|...|..+.+..-..|...+ .
T Consensus 329 iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nl 408 (629)
T KOG2300|consen 329 IVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNL 408 (629)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3334445788888888777775431 1122 112223333345667888888888887764323333322 2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC-C-----cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHh------
Q 038622 375 SLLTYYCRAGDIKRAADIVQNMTSNGCEP-D-----IVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQA------ 442 (587)
Q Consensus 375 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------ 442 (587)
.++..|.+.|+.+.-.++++.+-..+..+ + ...+..-+-....++++.+|...+++..+.. +.+-
T Consensus 409 nlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma---naed~~rL~a 485 (629)
T KOG2300|consen 409 NLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA---NAEDLNRLTA 485 (629)
T ss_pred hHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---chhhHHHHHH
Confidence 34556777777666555555443211000 0 0111112222346788888888888777641 2222
Q ss_pred --HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038622 443 --YNPVIQALFRRKRTTEAMRLFREMME 468 (587)
Q Consensus 443 --~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (587)
...+.......|+..++.+...-+.+
T Consensus 486 ~~LvLLs~v~lslgn~~es~nmvrpamq 513 (629)
T KOG2300|consen 486 CSLVLLSHVFLSLGNTVESRNMVRPAMQ 513 (629)
T ss_pred HHHHHHHHHHHHhcchHHHHhccchHHH
Confidence 23344555567777777776665554
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.57 E-value=4.8 Score=34.34 Aligned_cols=61 Identities=11% Similarity=0.101 Sum_probs=39.6
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCC
Q 038622 481 VFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKF 543 (587)
Q Consensus 481 l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 543 (587)
+.+++...|+ +-++++.-...+... +.+..+|..-+.+....=+.++|..-+.++++.+|.
T Consensus 236 y~QC~L~~~e-~yevleh~seiL~~~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 236 YCQCLLKKEE-YYEVLEHCSEILRHH-PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HHHHHhhHHH-HHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 3344445566 667777777776642 226677777777777766777777777777777665
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=88.47 E-value=32 Score=35.30 Aligned_cols=18 Identities=33% Similarity=0.412 Sum_probs=9.6
Q ss_pred HHHHhcCCHHHHHHHHHH
Q 038622 168 SGLCKLGEVEEAVEILNQ 185 (587)
Q Consensus 168 ~~~~~~g~~~~a~~~~~~ 185 (587)
..+.-+|+++.|++.+-.
T Consensus 266 ~~LlLtgqFE~AI~~L~~ 283 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR 283 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHh
Confidence 444455666666665554
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=88.21 E-value=11 Score=29.59 Aligned_cols=52 Identities=10% Similarity=0.009 Sum_probs=25.3
Q ss_pred hcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038622 67 EEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSE 119 (587)
Q Consensus 67 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 119 (587)
..++.+++..++..+.-.- |.....-..-+..+...|++.+|..+|+.+...
T Consensus 22 ~~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 3555555555555554432 222222233334455556666666666555543
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=88.12 E-value=36 Score=35.46 Aligned_cols=225 Identities=16% Similarity=0.083 Sum_probs=122.4
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCH-------hhHHHHHH-HHHhcCChHHHHHHHHHHHHcC----CCCCHHhHHHH
Q 038622 204 TLCKENQVEEATELARVLTSKGILPDV-------CTFNSLIQ-GLCLTSNFDVAMELFQEMKTKG----CQPDEFTYNML 271 (587)
Q Consensus 204 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l 271 (587)
.....+++.+|..++.++...-..|+. ..+..+-. .....|+++.|.++.+.....- ..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 445678899999988887654222221 12333322 3446789999999988877641 12334556677
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCCHHHH---HH--HHHHHHccCCH--HHHHHHHHHHHHcC---CCC---CHHHH
Q 038622 272 IDSLCSRGMLEEALKLLKEMESSGCARNVVTY---NT--LIDGFCKLKRI--EEAEEIFDEMEIQG---ISR---NSVTY 338 (587)
Q Consensus 272 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~--l~~~~~~~~~~--~~a~~~~~~~~~~~---~~~---~~~~~ 338 (587)
+.+..-.|++++|..+.....+.....+...+ .. -...+...|+. .+....+....... .+. -..+.
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 77888889999999988877654222232222 22 23345556632 33333333332221 111 12233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCCHh--hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchH----
Q 038622 339 NTLIDGLCKSRRVEDAAQLMDQMIM----EGLKPDKF--TYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTY---- 408 (587)
Q Consensus 339 ~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---- 408 (587)
..+..++.+ .+.+..-...... ....|-.. .+..++.+....|+.++|...+.++......+....+
T Consensus 584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 334444443 3333333332222 21222122 2236778888999999999999988775333221111
Q ss_pred HHH--HHHHHhcCChHHHHHHHHHH
Q 038622 409 GTL--IGGLCKAGRVEVASKLLRSI 431 (587)
Q Consensus 409 ~~l--~~~~~~~~~~~~a~~~~~~~ 431 (587)
... .......|+...+...+.+-
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHhc
Confidence 111 12234678888888877663
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=87.97 E-value=35 Score=35.15 Aligned_cols=375 Identities=10% Similarity=0.016 Sum_probs=166.2
Q ss_pred HHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 038622 30 LCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLI--EEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIE 107 (587)
Q Consensus 30 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 107 (587)
..+.|++..+..+...+... +. ..|........ ....+++....+++-.. .|.....-......+.+.+++.
T Consensus 43 a~~~g~~~~~~~~~~~l~d~--pL--~~yl~y~~L~~~l~~~~~~ev~~Fl~~~~~--~P~~~~Lr~~~l~~La~~~~w~ 116 (644)
T PRK11619 43 AWDNRQMDVVEQLMPTLKDY--PL--YPYLEYRQLTQDLMNQPAVQVTNFIRANPT--LPPARSLQSRFVNELARREDWR 116 (644)
T ss_pred HHHCCCHHHHHHHHHhccCC--Cc--HhHHHHHHHHhccccCCHHHHHHHHHHCCC--CchHHHHHHHHHHHHHHccCHH
Confidence 45677777776666665422 22 22222222111 22244544444333221 1333334444445556667777
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHH--HHHHH
Q 038622 108 DALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAV--EILNQ 185 (587)
Q Consensus 108 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~--~~~~~ 185 (587)
..+..+.. .+.+...-.....+....|+.++|.+..+.+=..|. ..+.....++..+.+.|...... +=+..
T Consensus 117 ~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~ 190 (644)
T PRK11619 117 GLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGKQDPLAYLERIRL 190 (644)
T ss_pred HHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 66652211 134444455666677777887777666666544432 23445555665555444332211 11222
Q ss_pred HHhCCCCCChhhHHHHHHHHhc------------cCCHHHHHHHHHHHHhCCCCCCH--hhHHHHHHHHHhcCChHHHHH
Q 038622 186 MILRDCSPNTITYNTLISTLCK------------ENQVEEATELARVLTSKGILPDV--CTFNSLIQGLCLTSNFDVAME 251 (587)
Q Consensus 186 ~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~ 251 (587)
+...+ +......+...... ..+...+...+.. ++++. .....+.-.-....+.+.|..
T Consensus 191 al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rlar~d~~~A~~ 262 (644)
T PRK11619 191 AMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAAVAFASVARQDAENARL 262 (644)
T ss_pred HHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHHHHHHHHHHhCHHHHHH
Confidence 22221 11111111111100 0011111111100 11111 111111111223345566666
Q ss_pred HHHHHHHcC-CCCC--HHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 038622 252 LFQEMKTKG-CQPD--EFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEI 328 (587)
Q Consensus 252 ~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 328 (587)
++....... ..+. ..++..++......+...++...+....... .+.......+......++++.+...+..|..
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~ 340 (644)
T PRK11619 263 MIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPM 340 (644)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCH
Confidence 666653322 1111 1122233322222222445555555433221 2333333334444456666666666655533
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------------CCC--------CCH------hhHHHHHHHHHh
Q 038622 329 QGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIME------------GLK--------PDK------FTYNSLLTYYCR 382 (587)
Q Consensus 329 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------~~~--------~~~------~~~~~l~~~~~~ 382 (587)
.. .....-..-+++++...|+.++|...|+++... |.+ |.. .....-+..+..
T Consensus 341 ~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~ 419 (644)
T PRK11619 341 EA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPEMARVRELMY 419 (644)
T ss_pred hh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChHHHHHHHHHH
Confidence 21 112222333455555566666666666655321 111 000 011122345667
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 038622 383 AGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRS 430 (587)
Q Consensus 383 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 430 (587)
.|....|...+..+... .+......++......|..+.++.....
T Consensus 420 ~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~ 464 (644)
T PRK11619 420 WNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIA 464 (644)
T ss_pred CCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhh
Confidence 78888999888888764 2444556666767778888888776644
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.77 E-value=16 Score=31.12 Aligned_cols=57 Identities=14% Similarity=0.097 Sum_probs=27.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCcchH------HHHHHHHHhcCChHHHHHHHHHHHHc
Q 038622 378 TYYCRAGDIKRAADIVQNMTSNGCEPDIVTY------GTLIGGLCKAGRVEVASKLLRSIQMK 434 (587)
Q Consensus 378 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------~~l~~~~~~~~~~~~a~~~~~~~~~~ 434 (587)
......+++.+|+.+|+++....+..+.--| ..-+-++.-..+.-.+...+++..+.
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 3344556777777777776664333221111 11122223335555555555555553
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=87.77 E-value=21 Score=32.25 Aligned_cols=235 Identities=12% Similarity=0.118 Sum_probs=136.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH----HHHHHHHHHHHHCCCCCChhh
Q 038622 52 APDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRI----EDALSFIQEMVSEGFNPDQFT 127 (587)
Q Consensus 52 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~ 127 (587)
.+|..+....+.++...|. +.+...+..+... .+...-...+.++.+.|+. +++...+..+... .++..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 4677777777777776664 3444444444432 3555556666677777763 4677777766443 456666
Q ss_pred HHHHHHHHHhcCCh-----HHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 038622 128 YNTLVNGLCKVGHV-----KQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLI 202 (587)
Q Consensus 128 ~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 202 (587)
....+.++...+.. ..+.+.+..... .++..+-...+.++.+.++ +.++..+-.+... ++.......+
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~ 180 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAA 180 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHH
Confidence 55556665554321 233444444433 3455666667777777776 4566666666653 2444544455
Q ss_pred HHHhccC-CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCCh
Q 038622 203 STLCKEN-QVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGML 281 (587)
Q Consensus 203 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 281 (587)
.++...+ +.+.+...+..+.. .++..+-...+.++.+.++. .+...+-...+.+ + .....+.++...|..
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK 251 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH
Confidence 5555442 23456666666654 23666666777777777774 5555555555443 2 234566777777775
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 038622 282 EEALKLLKEMESSGCARNVVTYNTLIDGFC 311 (587)
Q Consensus 282 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 311 (587)
+|+..+..+.+.. +|..+......++.
T Consensus 252 -~a~p~L~~l~~~~--~d~~v~~~a~~a~~ 278 (280)
T PRK09687 252 -TLLPVLDTLLYKF--DDNEIITKAIDKLK 278 (280)
T ss_pred -hHHHHHHHHHhhC--CChhHHHHHHHHHh
Confidence 6788888877643 46665555555443
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=87.53 E-value=20 Score=31.88 Aligned_cols=64 Identities=19% Similarity=0.082 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHHccCCHhHHHHHHH---------------HHHhcCCCCCc---hhhhhhhHHHHHHHHHHHHhcchhh
Q 038622 510 EFSSFYMLAEGLVSLGKEETLVELID---------------MVMDKAKFSDR---ETSMVRGFLKIRKFQDALATFGDIL 571 (587)
Q Consensus 510 ~~~~~~~l~~~~~~~g~~~~A~~~~~---------------~~~~~~~~~~~---~~~~~~~~~~~~~~~~A~~~~~~~~ 571 (587)
++.....++..|++.|++.+|+..+= .....+...+. ....+.-|+-.|+...|...+....
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~ 168 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFT 168 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 56666667777777777766665551 11122222222 2333444777788888888877777
Q ss_pred hc
Q 038622 572 DS 573 (587)
Q Consensus 572 ~~ 573 (587)
+.
T Consensus 169 ~~ 170 (260)
T PF04190_consen 169 SK 170 (260)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
; PDB: 3LKU_E 2WPV_G. |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=87.33 E-value=15 Score=31.39 Aligned_cols=63 Identities=16% Similarity=0.083 Sum_probs=34.1
Q ss_pred hHHHHHHHHHhcCCH-------HHHHHHHHHHHhcCCCC----C-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 038622 442 AYNPVIQALFRRKRT-------TEAMRLFREMMEKADPP----D-ALTYKHVFRGLCNGGGPIGEAVDFVIEMLER 505 (587)
Q Consensus 442 ~~~~l~~~~~~~g~~-------~~A~~~~~~~~~~~~~~----~-~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 505 (587)
.+..+++.|...|+. ..|.+.|.++......| + ......++....+.|+ +++|.+.+.+++..
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~-~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGN-YDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHcC
Confidence 445556666666653 33444555555432111 1 2233344555666777 77777777777754
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=87.27 E-value=5.1 Score=28.51 Aligned_cols=67 Identities=15% Similarity=0.219 Sum_probs=40.7
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC--Cc-hhhhhhhHHHHHHHHHHH
Q 038622 496 VDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS--DR-ETSMVRGFLKIRKFQDAL 564 (587)
Q Consensus 496 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~A~ 564 (587)
+.-+++.++. .| |......++..+...|++++|.+.+-.+++.++.. +. ...++.++-..|.-+.-.
T Consensus 8 ~~al~~~~a~--~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv 78 (90)
T PF14561_consen 8 IAALEAALAA--NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLV 78 (90)
T ss_dssp HHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHH
T ss_pred HHHHHHHHHc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHH
Confidence 3444555553 35 67888888888888888888888888888877654 22 455555555555544333
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.17 E-value=5.6 Score=35.73 Aligned_cols=101 Identities=17% Similarity=0.194 Sum_probs=76.9
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHH
Q 038622 441 QAYNPVIQALFRRKRTTEAMRLFREMMEKAD---PPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYM 516 (587)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~ 516 (587)
..|..=+.-|++..++..|...|.+.++... ..+...|.+-..+-...|+ +..|+.-..+++. +.| ...++..
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~N-yRs~l~Dcs~al~--~~P~h~Ka~~R 158 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGN-YRSALNDCSAALK--LKPTHLKAYIR 158 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHh--cCcchhhhhhh
Confidence 4566677888888889999999998887531 2235566666666677788 8888888888887 567 5778888
Q ss_pred HHHHHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 517 LAEGLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 517 l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
=+.++....++++|..+.+..+....+.
T Consensus 159 ~Akc~~eLe~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 159 GAKCLLELERFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 8888888999999999988886655543
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=86.76 E-value=12 Score=28.66 Aligned_cols=67 Identities=12% Similarity=0.104 Sum_probs=37.1
Q ss_pred CCcchHHHHHHHHHhcC---ChHHHHHHHHHHHHc-CCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038622 403 PDIVTYGTLIGGLCKAG---RVEVASKLLRSIQMK-GIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEK 469 (587)
Q Consensus 403 ~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (587)
++..+-..+++++.++. +..+.+.+++.+.+. .+....+-...++-++.+.++|++++++.+..++.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 44555555666665543 345556666666642 22222234445556666666777777666666664
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.70 E-value=3.5 Score=36.89 Aligned_cols=98 Identities=17% Similarity=0.065 Sum_probs=76.7
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038622 405 IVTYGTLIGGLCKAGRVEVASKLLRSIQMK---GIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHV 481 (587)
Q Consensus 405 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 481 (587)
...|..=++-|.+..++..|...|.+.++. +...+...|++-+.+....|++..|+.=...++..+ |.....+..-
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~-P~h~Ka~~R~ 159 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK-PTHLKAYIRG 159 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhhhhh
Confidence 456777788889999999999999988776 333345677777888888999999999999998864 4455566666
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHH
Q 038622 482 FRGLCNGGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 482 ~~~~~~~~~~~~~A~~~~~~~~~ 504 (587)
..++..... +++|....+..++
T Consensus 160 Akc~~eLe~-~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 160 AKCLLELER-FAEAVNWCEEGLQ 181 (390)
T ss_pred hHHHHHHHH-HHHHHHHHhhhhh
Confidence 777778787 8889888888765
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.14 E-value=22 Score=30.97 Aligned_cols=209 Identities=14% Similarity=0.148 Sum_probs=128.9
Q ss_pred CCCCCHHhHHHHHHHH-HccCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHc---CC-
Q 038622 260 GCQPDEFTYNMLIDSL-CSRGMLEEALKLLKEMESSGCARN---VVTYNTLIDGFCKLKRIEEAEEIFDEMEIQ---GI- 331 (587)
Q Consensus 260 ~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~- 331 (587)
+..||...-+..-..- .+..++++|+.-|++.++...... ..++..++....+.+++++....|.+++.. .+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 3456655433322211 244578999999999887642222 345567788899999999999999887542 11
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--
Q 038622 332 -SRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIME--GLKPD---KFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEP-- 403 (587)
Q Consensus 332 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-- 403 (587)
.-+....+.++.......+.+--..+|+.-+.. ....+ ..|-..+...|...+.+.+-.++++++...-...
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 223456677776666667777666676655432 01111 1244567888888899998888888876531111
Q ss_pred --C-------cchHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCChHhHHHH----HHHHHhcCCHHHHHHHHHHHHh
Q 038622 404 --D-------IVTYGTLIGGLCKAGRVEVASKLLRSIQMK-GIVLTPQAYNPV----IQALFRRKRTTEAMRLFREMME 468 (587)
Q Consensus 404 --~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l----~~~~~~~g~~~~A~~~~~~~~~ 468 (587)
+ .++|..-+..|..+.+-..-..++++.+.. .--|.+.....+ +....+.|++++|-.-|-++.+
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 1 234555567787888888888888877653 223444433222 2345567888887665554544
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.97 E-value=7 Score=34.18 Aligned_cols=33 Identities=21% Similarity=0.202 Sum_probs=20.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 038622 104 GRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLC 136 (587)
Q Consensus 104 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 136 (587)
+.++=....++.|.+.|+..|..+|..|++.+-
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfP 118 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFP 118 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCc
Confidence 344445555666666777777777777776543
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=85.73 E-value=3.1 Score=23.34 Aligned_cols=30 Identities=20% Similarity=0.263 Sum_probs=17.9
Q ss_pred HHHHHHHHHHccCCHhHHHHH--HHHHHhcCC
Q 038622 513 SFYMLAEGLVSLGKEETLVEL--IDMVMDKAK 542 (587)
Q Consensus 513 ~~~~l~~~~~~~g~~~~A~~~--~~~~~~~~~ 542 (587)
.+..++-.+...|++++|+.+ ++-+...++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 455666777777777777777 335544443
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.59 E-value=10 Score=33.28 Aligned_cols=105 Identities=17% Similarity=0.161 Sum_probs=59.7
Q ss_pred CCCHHHHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 038622 52 APDERTFTTLMQGLIE-----EGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQF 126 (587)
Q Consensus 52 ~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 126 (587)
..|-.+|...+..+.. .+..+-....++.|.+.|+..+..+|..|++.+=+- ..-|. .
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKg----------------kfiP~-n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKG----------------KFIPQ-N 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccc----------------ccccH-H
Confidence 3455566666665543 244555555666677777777777776666543221 11111 1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC
Q 038622 127 TYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGE 175 (587)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 175 (587)
.+......|-++ -+-+++++++|...|+.||..+-..++.++.+.+-
T Consensus 127 vfQ~~F~HYP~Q--Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 127 VFQKVFLHYPQQ--QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHhhCchh--hhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 222222223222 24567777888777887887777777777766554
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.58 E-value=1.4 Score=39.53 Aligned_cols=120 Identities=13% Similarity=-0.061 Sum_probs=74.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHH
Q 038622 380 YCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEA 459 (587)
Q Consensus 380 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 459 (587)
....|.++.|++.+...+..++ +....|..-..++++.+++..|++-+......+.. +..-|-.-..+....|+|++|
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp-~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNP-PLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred HhcCcchhhhhcccccccccCC-chhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHH
Confidence 4456778888888887777533 35556666677777888888888877777764322 223444445556667888888
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 038622 460 MRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 504 (587)
.+.+..+.+.++.+....+. -...-..++ .++-...+++..+
T Consensus 202 a~dl~~a~kld~dE~~~a~l--KeV~p~a~k-i~e~~~k~er~~~ 243 (377)
T KOG1308|consen 202 AHDLALACKLDYDEANSATL--KEVFPNAGK-IEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHHhccccHHHHHHH--HHhccchhh-hhhchhHHHHHHH
Confidence 88888888776554444332 222333444 5555555555553
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=85.58 E-value=1.5 Score=38.78 Aligned_cols=68 Identities=7% Similarity=-0.058 Sum_probs=59.3
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc-hhhhhhhHHHHHHHHHHHHhcchhhhccCchhhhhh
Q 038622 515 YMLAEGLVSLGKEETLVELIDMVMDKAKFSDR-ETSMVRGFLKIRKFQDALATFGDILDSRMPRKTFRS 582 (587)
Q Consensus 515 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 582 (587)
.++-.+|.+.++++.|.+..+.++...|+... +..-+..|.+.|.+..|..-++..++.-+.+.+...
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 45667889999999999999999999998754 788888999999999999999999998877766544
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.55 E-value=26 Score=31.14 Aligned_cols=56 Identities=14% Similarity=0.232 Sum_probs=29.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 038622 130 TLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQM 186 (587)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 186 (587)
.....|...|.+.+|.++.+..+..+ +.+...+..++..+...||--.+.+-|+.+
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34455555566666666665555542 224445555555555566544444444443
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=85.47 E-value=7.6 Score=27.91 Aligned_cols=58 Identities=17% Similarity=0.165 Sum_probs=33.9
Q ss_pred HhCCCCHHHHHHHHHHHHHcCC---CCC-----HHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 486 CNGGGPIGEAVDFVIEMLERGF---LPE-----FSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 486 ~~~~~~~~~A~~~~~~~~~~~~---~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
.+.|+ +.+|.+.+.+..+... .+. ..+...++.+....|++++|...++++++.....
T Consensus 9 ~~~~d-y~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 9 LRSGD-YSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHcCC-HHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 34555 6777666666553211 111 2334556677777777777777777777655543
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=85.44 E-value=2.4 Score=28.72 Aligned_cols=49 Identities=14% Similarity=0.089 Sum_probs=28.8
Q ss_pred hCCCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHhHHHHHHHH
Q 038622 487 NGGGPIGEAVDFVIEMLERGFLP--EFSSFYMLAEGLVSLGKEETLVELIDM 536 (587)
Q Consensus 487 ~~~~~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 536 (587)
...+ .++|+..++++++.-..| ...++..|+.+|...|++.+.+++.-.
T Consensus 18 ~~~~-~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 18 HQNE-TQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred ccch-HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 677777777777643222 133445566667777777776665543
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=85.22 E-value=1.5 Score=22.28 Aligned_cols=17 Identities=35% Similarity=0.456 Sum_probs=7.0
Q ss_pred HHHHHHhcCCHHHHHHH
Q 038622 446 VIQALFRRKRTTEAMRL 462 (587)
Q Consensus 446 l~~~~~~~g~~~~A~~~ 462 (587)
++..+...|++++|..+
T Consensus 7 la~~~~~~G~~~eA~~~ 23 (26)
T PF07721_consen 7 LARALLAQGDPDEAERL 23 (26)
T ss_pred HHHHHHHcCCHHHHHHH
Confidence 33344444444444433
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=85.08 E-value=19 Score=29.21 Aligned_cols=132 Identities=11% Similarity=0.131 Sum_probs=61.9
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 038622 42 MMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGF 121 (587)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 121 (587)
..+.+.+.++++++..+..++..+.+.|++.....+++.-. ++++..+-..|+. ..+.+..+.++=-+|.++
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~V---i~DSk~lA~~LLs---~~~~~~~~~Ql~lDMLkR-- 87 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHV---IPDSKPLACQLLS---LGNQYPPAYQLGLDMLKR-- 87 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc---cCCcHHHHHHHHH---hHccChHHHHHHHHHHHH--
Confidence 33344445566777777777777777776665544433221 1222222222211 112233344443344332
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038622 122 NPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMI 187 (587)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 187 (587)
=...+..++..+...|++-+|+.+.+..... +......++.+..+.+|...-..+|+-..
T Consensus 88 --L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 88 --LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred --hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0113445566666777777777766654221 11122334455555555444444444333
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.90 E-value=18 Score=35.64 Aligned_cols=133 Identities=14% Similarity=0.100 Sum_probs=93.3
Q ss_pred hhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038622 21 STFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGF 100 (587)
Q Consensus 21 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (587)
...+.++..+-++|-.++|.++ .+|+..-.. ...+.|+++.|.++..++. +..-|..|..+.
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFe---lal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~a 676 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALEL---------STDPDQRFE---LALKLGRLDIAFDLAVEAN------SEVKWRQLGDAA 676 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhc---------CCChhhhhh---hhhhcCcHHHHHHHHHhhc------chHHHHHHHHHH
Confidence 3556777777777777777553 344433322 2346789999988765542 566789999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHH
Q 038622 101 CKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAV 180 (587)
Q Consensus 101 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 180 (587)
...|++..|.+.|.+... |..|+..+...|+.+....+-....+.|.. + ....+|...|+++++.
T Consensus 677 l~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N-----~AF~~~~l~g~~~~C~ 741 (794)
T KOG0276|consen 677 LSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-N-----LAFLAYFLSGDYEECL 741 (794)
T ss_pred hhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-c-----hHHHHHHHcCCHHHHH
Confidence 999999999999887653 445677777788877777776777666532 2 3345677889999998
Q ss_pred HHHHHH
Q 038622 181 EILNQM 186 (587)
Q Consensus 181 ~~~~~~ 186 (587)
+++..-
T Consensus 742 ~lLi~t 747 (794)
T KOG0276|consen 742 ELLIST 747 (794)
T ss_pred HHHHhc
Confidence 888664
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=84.87 E-value=5.9 Score=28.17 Aligned_cols=63 Identities=13% Similarity=0.171 Sum_probs=43.9
Q ss_pred ChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038622 35 QIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVH 98 (587)
Q Consensus 35 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 98 (587)
|.=++.+-++.+...++-|++.+..+.++++.+.+++..|.++++.+.... ..+...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 344566777777777778888888888888888888888888888776432 223344544444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=84.61 E-value=13 Score=26.89 Aligned_cols=34 Identities=12% Similarity=0.190 Sum_probs=12.5
Q ss_pred CCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 038622 399 NGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQ 432 (587)
Q Consensus 399 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 432 (587)
.++.|++.+....+++|.+.+++..|.++|+-+.
T Consensus 39 ~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 39 YDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333444444444444444444444444444433
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.38 E-value=26 Score=31.82 Aligned_cols=54 Identities=17% Similarity=0.198 Sum_probs=33.4
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHhcCCCCCchhhhh-------hhHHHHHHHHHHHHhcc
Q 038622 515 YMLAEGLVSLGKEETLVELIDMVMDKAKFSDRETSMV-------RGFLKIRKFQDALATFG 568 (587)
Q Consensus 515 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~A~~~~~ 568 (587)
..++..|...++|.+|+.+...++..-..-|-...++ .+|....++.+|...+.
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLT 192 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLT 192 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHH
Confidence 4588999999999999988877665433322222222 33555555555555443
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.17 E-value=52 Score=33.56 Aligned_cols=123 Identities=11% Similarity=0.058 Sum_probs=76.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC--cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 038622 377 LTYYCRAGDIKRAADIVQNMTSNGCEPD--IVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRK 454 (587)
Q Consensus 377 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 454 (587)
.-++..-|+-++|..+.+++.... .|- ..-...++.+|+..|+.....+++.-.... ...|..-...++-.+.-..
T Consensus 508 GiaL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~ 585 (929)
T KOG2062|consen 508 GIALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFR 585 (929)
T ss_pred hHHHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEec
Confidence 344566677788888888887642 222 223345677888888888777777765543 2223333334444455567
Q ss_pred CHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 038622 455 RTTEAMRLFREMMEKADPPDAL--TYKHVFRGLCNGGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 455 ~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 504 (587)
+++....+.+-+.+. ..|... +-..++-+|+-.| ..+|+.+++.+..
T Consensus 586 dp~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG--~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 586 DPEQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTG--LKEAINLLEPLTS 634 (929)
T ss_pred ChhhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCC--cHHHHHHHhhhhc
Confidence 788888877766664 234333 2234454555555 4899999999885
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.55 E-value=13 Score=31.27 Aligned_cols=125 Identities=18% Similarity=0.130 Sum_probs=75.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHH
Q 038622 408 YGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKA--DPPDALTYKHVFRGL 485 (587)
Q Consensus 408 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~ 485 (587)
....+..+.+.+...+++...+.-.+.++. +......++..++-.|+|++|..-++-+-... ..+....|..++.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~- 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC- 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH-
Confidence 344566778889999999999888876444 55667788899999999999999888777642 12223344444432
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHH-Hcc-CCHhHHHHHHHHHHhcCCCC
Q 038622 486 CNGGGPIGEAVDFVIEMLERGFLP------EFSSFYMLAEGL-VSL-GKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 486 ~~~~~~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~~~-~~~-g~~~~A~~~~~~~~~~~~~~ 544 (587)
...-+...+.+..| .+.....|...+ ... |.-+.+..+-+.+.+..|.+
T Consensus 82 ----------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~ 138 (273)
T COG4455 82 ----------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVP 138 (273)
T ss_pred ----------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCC
Confidence 11112233322233 344444443333 233 34444555556677777765
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=82.98 E-value=43 Score=31.67 Aligned_cols=196 Identities=13% Similarity=0.058 Sum_probs=90.7
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HccCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHH
Q 038622 277 SRGMLEEALKLLKEMESSGCARNVVTYNTLIDGF-CKLKRIEEAEEIFDEMEIQGISRN---SVTYNTLIDGLCKSRRVE 352 (587)
Q Consensus 277 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~ 352 (587)
-.|+..++.+.+..+.....++....+..|+.+- ....+...|+..|+...-.- |.+ ......-+....+.|+.+
T Consensus 124 ~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLla-PGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 124 LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLA-PGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhC-CchHHHHHHHHHhhHHHHhcCcHH
Confidence 4566777777777666555555555555555433 33456777777777654331 111 112223333445667766
Q ss_pred HHHHHHHHHHHcC-CCCCHhh-HHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 038622 353 DAAQLMDQMIMEG-LKPDKFT-YNSLLTYYCRAGDIKRAADIVQNMTSN-GCEPDIVTYGTLIGGLCKAGRVEVASKLLR 429 (587)
Q Consensus 353 ~A~~~~~~~~~~~-~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 429 (587)
++..+-.+....- ..|-... +..+.....+.++-..- ..+..++.. +..-....|..+++.-.-.|+.+-|.-.-+
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~ 281 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASE 281 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccH-HHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 6665555544431 1111111 12222233333322111 123333332 111124466667777677777777776666
Q ss_pred HHHHcCCCCCh-HhHHHHHH--HHHhcCCHHHHHHHHHHHHhcCCCCC
Q 038622 430 SIQMKGIVLTP-QAYNPVIQ--ALFRRKRTTEAMRLFREMMEKADPPD 474 (587)
Q Consensus 430 ~~~~~~~~~~~-~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~ 474 (587)
++.......+. .....+.. +-.-..++++|.+.+..+-...+++.
T Consensus 282 ~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~ 329 (421)
T PRK12798 282 RALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSER 329 (421)
T ss_pred HHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChh
Confidence 66654211111 11111111 12223456666666665554433333
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.98 E-value=59 Score=33.23 Aligned_cols=63 Identities=14% Similarity=0.112 Sum_probs=35.7
Q ss_pred cHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 038622 162 TYNSLISGLCKLGE-VEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSK 224 (587)
Q Consensus 162 ~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 224 (587)
....++..+....+ -+--.+++..+...-.+....-|..+..++....+.+.+.++++++.+.
T Consensus 176 ~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~~PDy~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 176 NLTYLLELLISLVNNREFRNKVLRLLVKTYLKLPSPDYFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCCCeeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 34444444443332 2333344444443311222333556778888899999999999998874
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=82.77 E-value=43 Score=31.57 Aligned_cols=140 Identities=13% Similarity=0.101 Sum_probs=74.5
Q ss_pred HHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH---HhcCCHH
Q 038622 31 CKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGF---CKEGRIE 107 (587)
Q Consensus 31 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~ 107 (587)
...+|.+.-+.+++.- |-...++..+...+..+|+...|.+++++++-.- ..++......+ ...|..
T Consensus 21 v~~~Dp~~l~~ll~~~-----PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~----e~~~~~~F~~~~~~~~~g~~- 90 (360)
T PF04910_consen 21 VQSHDPNALINLLQKN-----PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAF----ERAFHPSFSPFRSNLTSGNC- 90 (360)
T ss_pred HHccCHHHHHHHHHHC-----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----HHHHHHHhhhhhcccccCcc-
Confidence 3445555444444221 5667777777777778888777777777765320 00111010000 000000
Q ss_pred HHHHHHHHHHHCCCCCChhh---HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHH-hcCCHHHHHHHH
Q 038622 108 DALSFIQEMVSEGFNPDQFT---YNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLC-KLGEVEEAVEIL 183 (587)
Q Consensus 108 ~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~ 183 (587)
++ .-...-|... ....+..+.+.|-+..|.++.+.+...++..|+.....+++.|+ +.++++--++++
T Consensus 91 -------rL-~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~ 162 (360)
T PF04910_consen 91 -------RL-DYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFS 162 (360)
T ss_pred -------cc-CCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHH
Confidence 00 0000112222 23345667788888888888888887654445555555555544 677888777777
Q ss_pred HHHHh
Q 038622 184 NQMIL 188 (587)
Q Consensus 184 ~~~~~ 188 (587)
+....
T Consensus 163 ~~~~~ 167 (360)
T PF04910_consen 163 ESPLA 167 (360)
T ss_pred HhHhh
Confidence 76554
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.71 E-value=31 Score=29.80 Aligned_cols=65 Identities=17% Similarity=0.175 Sum_probs=47.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC
Q 038622 442 AYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPE 510 (587)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~ 510 (587)
.+.++..++...|++-++++.-.+++... +.+...|..-+.+.+..=+ .++|.+-+.++++ +.|.
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~-~~nvKA~frRakAhaa~Wn-~~eA~~D~~~vL~--ldps 296 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHH-PGNVKAYFRRAKAHAAVWN-EAEAKADLQKVLE--LDPS 296 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhcC-HHHHHHHHHHHHh--cChh
Confidence 34556677777888888888888888874 6666677667777666666 7888888888887 3453
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=82.48 E-value=16 Score=26.42 Aligned_cols=59 Identities=15% Similarity=0.264 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHH
Q 038622 353 DAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLI 412 (587)
Q Consensus 353 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 412 (587)
+..+-++.+....+.|++......+.+|.+.+|+..|+++++-+... ..+....|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHH
Confidence 45555666666667788888888888888888888888888877654 222222555443
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=81.42 E-value=4.1 Score=24.13 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=8.5
Q ss_pred HHHHHhcCChHHHHHHHHHHH
Q 038622 412 IGGLCKAGRVEVASKLLRSIQ 432 (587)
Q Consensus 412 ~~~~~~~~~~~~a~~~~~~~~ 432 (587)
+.+|...|+.+.|.++++++.
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHH
Confidence 333444444444444444433
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.41 E-value=36 Score=29.76 Aligned_cols=122 Identities=10% Similarity=0.058 Sum_probs=61.4
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChH-H
Q 038622 346 CKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCR-AGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVE-V 423 (587)
Q Consensus 346 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~ 423 (587)
.+......|+++-+.++..+. .+-.+|..--.+... ..+..+-.+.+.++++..++ +...|..--......|++. .
T Consensus 54 ~~~E~S~RAl~LT~d~i~lNp-AnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npK-NYQvWHHRr~ive~l~d~s~r 131 (318)
T KOG0530|consen 54 AKNEKSPRALQLTEDAIRLNP-ANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPK-NYQVWHHRRVIVELLGDPSFR 131 (318)
T ss_pred hccccCHHHHHHHHHHHHhCc-ccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHhcCcccc
Confidence 344555566666666665321 111122211111111 12345555666666655333 5555544433444455555 5
Q ss_pred HHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038622 424 ASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKA 470 (587)
Q Consensus 424 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 470 (587)
=+++.+.|...+-+ +-++|..--+++..-+.++.-+.+..++++.+
T Consensus 132 ELef~~~~l~~DaK-NYHaWshRqW~~r~F~~~~~EL~y~~~Lle~D 177 (318)
T KOG0530|consen 132 ELEFTKLMLDDDAK-NYHAWSHRQWVLRFFKDYEDELAYADELLEED 177 (318)
T ss_pred hHHHHHHHHhcccc-chhhhHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 55566666654322 45566666666666666777777777776655
|
|
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=81.35 E-value=72 Score=33.12 Aligned_cols=135 Identities=10% Similarity=0.034 Sum_probs=83.1
Q ss_pred CCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHH---hcCChhHHHHHHHHHHHcCCCCChhhH
Q 038622 17 KPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLI---EEGNLDGALRIREQMVEHGCLVTNVTV 93 (587)
Q Consensus 17 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~ 93 (587)
.-+...+..||..+.+.|++++....-..|...- |.++..|..-+.-.. ..++..++...|++++..- .+...|
T Consensus 110 ~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy--~~v~iw 186 (881)
T KOG0128|consen 110 SYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY--NSVPIW 186 (881)
T ss_pred ccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc--ccchHH
Confidence 3456677889999999999887766655555543 677888877665433 4577888888888887653 344445
Q ss_pred HHHHHHHH-------hcCCHHHHHHHHHHHHHC-CCCCC--hhh---HHHHHHHHHhcCChHHHHHHHHHHHhC
Q 038622 94 NVLVHGFC-------KEGRIEDALSFIQEMVSE-GFNPD--QFT---YNTLVNGLCKVGHVKQALEVMDMMLQE 154 (587)
Q Consensus 94 ~~l~~~~~-------~~~~~~~a~~~~~~~~~~-~~~~~--~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (587)
...+..+. ..++++..+.+|.+++.. |...+ ... |..+-..|...-..++...++..-+..
T Consensus 187 ~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~ 260 (881)
T KOG0128|consen 187 EEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQ 260 (881)
T ss_pred HHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence 44444333 346788888888888764 21111 112 222333344444445666666665554
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=81.22 E-value=43 Score=30.50 Aligned_cols=48 Identities=21% Similarity=0.352 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHh--cC----CHHHHHHHHHHHHhC
Q 038622 142 KQALEVMDMMLQEGFDPDVFTYNSLISGLCK--LG----EVEEAVEILNQMILR 189 (587)
Q Consensus 142 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~a~~~~~~~~~~ 189 (587)
++.+.+++.+.+.|+..+..++......... .. ....+..+|+.|.+.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 3455666777777666555444332222222 11 234556666666554
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.19 E-value=20 Score=32.10 Aligned_cols=48 Identities=15% Similarity=0.220 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 038622 455 RTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEML 503 (587)
Q Consensus 455 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~ 503 (587)
++++++.++..=+..|+.||..+...++..+.+.++ +.+|..+...++
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n-~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKEN-YKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhccc-HHHHHHHHHHHH
Confidence 444444444444444555555555555555555554 555544444444
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.77 E-value=1.9 Score=36.29 Aligned_cols=59 Identities=17% Similarity=0.226 Sum_probs=50.0
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc
Q 038622 485 LCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 485 ~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
..+.++ .+.|.+.+.++++ +.| ....|..++..-.+.|+++.|.+.|++.++.+|....
T Consensus 5 ~~~~~D-~~aaaely~qal~--lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 5 LAESGD-AEAAAELYNQALE--LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hcccCC-hHHHHHHHHHHhh--cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 456677 8889999999997 556 6788889999999999999999999999999998754
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=80.34 E-value=1.3e+02 Score=35.66 Aligned_cols=62 Identities=5% Similarity=-0.083 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038622 300 VVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIME 364 (587)
Q Consensus 300 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 364 (587)
...|...++.....|+++.|...+-.+.+.+ -+..+...++..-..|+...|+.++++.+..
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 4567777777778888888887776666543 3446666777777888888888888888753
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.33 E-value=4 Score=34.42 Aligned_cols=58 Identities=22% Similarity=0.189 Sum_probs=47.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC
Q 038622 448 QALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP 509 (587)
Q Consensus 448 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p 509 (587)
......++.+.|.++|.+++..- |.....|..+...-.+.|+ ++.|.+.|++.++ ++|
T Consensus 3 ~~~~~~~D~~aaaely~qal~la-p~w~~gwfR~g~~~ekag~-~daAa~a~~~~L~--ldp 60 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELA-PEWAAGWFRLGEYTEKAGE-FDAAAAAYEEVLE--LDP 60 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcC-chhhhhhhhcchhhhhccc-HHHHHHHHHHHHc--CCc
Confidence 34567889999999999999862 5667788888887788888 9999999999998 456
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=80.27 E-value=4 Score=21.20 Aligned_cols=26 Identities=15% Similarity=0.244 Sum_probs=13.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038622 443 YNPVIQALFRRKRTTEAMRLFREMME 468 (587)
Q Consensus 443 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (587)
+..++..+...|++++|...+.+.++
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 34444455555555555555555443
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 108 bits (270), Expect = 1e-24
Identities = 58/455 (12%), Positives = 135/455 (29%), Gaps = 44/455 (9%)
Query: 53 PDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSF 112
P E L+Q + +LD Q + + ++ A
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 113 IQ---EMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISG 169
+ + YN ++ G + G K+ + V+ M+ G PD+ +Y + +
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 170 LCKLGEVEEAVE-ILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILP 228
+ + + +E L QM + L+S + ++ ++ + LP
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269
Query: 229 DVCTFNSLIQGLCLTS-----------------------NFDVAMELFQEMKTKGCQPDE 265
+ L++ + + ++A + K P +
Sbjct: 270 PPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSK 329
Query: 266 FTYNMLIDS----LCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEE 321
+ L AL+ K + + C L E
Sbjct: 330 EVKHARKTLKTLRDQWEKALCRALRETKNRLEREVYEGRFSLYPFL---CLLDEREVVRM 386
Query: 322 IFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYC 381
+ + Q + ++ TL L S R + Q + ++ + Y L
Sbjct: 387 LLQVL--QALPAQGESFTTLAREL--SARTFSRHVVQRQRVSGQVQALQNHYRKYLCLLA 442
Query: 382 RAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQ 441
++ Q + G + + + G++ +A L+++ QM + P
Sbjct: 443 SDAEVPEPCLPRQYWEALGAPEALREQPWPLPVQMELGKL-LAEMLVQATQMPCSLDKPH 501
Query: 442 AYNPVIQAL-----FRRKRTTEAMRLFREMMEKAD 471
+ ++ L FR + ++ ++ +
Sbjct: 502 RSSRLVPVLYHVYSFRNVQQIGILKPHPAYVQLLE 536
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 82.2 bits (201), Expect = 2e-16
Identities = 19/175 (10%), Positives = 47/175 (26%), Gaps = 4/175 (2%)
Query: 319 AEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLT 378
A + D S L+ ++ Q L + +
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 379 YYCRAGDIKRAADIVQ---NMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKG 435
+ A ++ + Y ++ G + G + +L ++ G
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 436 IVLTPQAYNPVIQALFRRKRTTEAM-RLFREMMEKADPPDALTYKHVFRGLCNGG 489
+ +Y +Q + R+ + + R +M ++ AL +
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 73.7 bits (179), Expect = 1e-13
Identities = 29/202 (14%), Positives = 57/202 (28%), Gaps = 7/202 (3%)
Query: 353 DAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLI 412
A L D P + LL + +
Sbjct: 75 MAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFF 134
Query: 413 GGLCKAGRVEVASKLL---RSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEK 469
++ +A LL + K +LT YN V+ R+ E + + + +
Sbjct: 135 KCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA 194
Query: 470 ADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEET 529
PD L+Y + + G + +M + G + + L+S T
Sbjct: 195 GLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQ----ALFTAVLLSEEDRAT 250
Query: 530 LVELIDMVMDKAKFSDRETSMV 551
+++ + V + V
Sbjct: 251 VLKAVHKVKPTFSLPPQLPPPV 272
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 65.2 bits (157), Expect = 3e-11
Identities = 17/148 (11%), Positives = 47/148 (31%), Gaps = 1/148 (0%)
Query: 7 AHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLI 66
H + + +N ++ + + + ++ + GL PD ++ +Q +
Sbjct: 152 VHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMG 211
Query: 67 EEGNLDGAL-RIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQ 125
+ G + R EQM + G + + VL+ + ++ P
Sbjct: 212 RQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPP 271
Query: 126 FTYNTLVNGLCKVGHVKQALEVMDMMLQ 153
+ L+ + ++ +
Sbjct: 272 VNTSKLLRDVYAKDGRVSYPKLHLPLKT 299
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 84.8 bits (210), Expect = 1e-17
Identities = 58/412 (14%), Positives = 116/412 (28%), Gaps = 57/412 (13%)
Query: 98 HGFCKE--GRIEDALSFIQEMVSEGFNPDQF-TYNTLVNGLCKVGHVKQALEVMDMMLQE 154
H K+ ++ L + + + G P Q + G + V++ L V+
Sbjct: 78 HDGGKQALETVQRLLPVLCQ--AHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHG- 134
Query: 155 GFDPD-VFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPN-TITYNTLISTLCKENQVE 212
P+ V S G L V+ + +L Q P + + V+
Sbjct: 135 -LTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLT--PEQVVAIASNGGGKQALETVQ 191
Query: 213 EATE-LARVLTSKGILPD-VCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEF-TYN 269
L + G+ P V S G + + + G P +
Sbjct: 192 RLLPVLCQAH---GLTPQQVVAIASNGGGKQALETVQRLLPVLC--QAHGLTPQQVVAIA 246
Query: 270 MLIDSLCSRGMLEEALKLLKEMESSGCA-----RNVVTYNTLIDGFCKLKRIEEAEEIFD 324
+ ++ L +L + A + VV + G L+ ++ +
Sbjct: 247 SNGGGKQALETVQRLLPVLCQ------AHGLTPQQVVAIASNSGGKQALETVQRLLPVLC 300
Query: 325 E-MEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDK-FTYNSLLTYYCR 382
+ + + V + G V+ ++ Q GL P + S
Sbjct: 301 QAHGLT--PQQVVAIASNGGGKQALETVQRLLPVLCQAH--GLTPQQVVAIASHDGGKQA 356
Query: 383 AGDIKRA-ADIVQNMTSNGCEPD-IVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTP 440
++R + Q P+ +V + GG V+ +L + LTP
Sbjct: 357 LETVQRLLPVLCQAHGLT---PEQVVAIASNGGGKQALETVQRLLPVLC----QAHGLTP 409
Query: 441 Q---AYNPVIQALFRRKRTTEAMRLFREMMEKA---DPPDALTYKHVFRGLC 486
+ A + + + +A P + G
Sbjct: 410 EQVVAIASHDGGKQALETVQRLLPVLC----QAHGLTPQQVVAIAS--NGGG 455
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 5e-05
Identities = 30/195 (15%), Positives = 55/195 (28%), Gaps = 28/195 (14%)
Query: 27 IKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGC 86
+ LC+AH + P + G + L + Q
Sbjct: 262 LPVLCQAHGLTPQ--------------QVVAIASNSGGKQALETVQRLLPVLCQAHG--- 304
Query: 87 LVTNVTVNVLVHGFCKE--GRIEDALSFIQEMVSEGFNPDQ-FTYNTLVNGLCKVGHVKQ 143
L V + +G K+ ++ L + + G P Q + G + V++
Sbjct: 305 LTPQQVVAIASNGGGKQALETVQRLLPVLCQAH--GLTPQQVVAIASHDGGKQALETVQR 362
Query: 144 ALEVMDMMLQEGFDPD-VFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPN-TITYNTL 201
L V+ P+ V S G L V+ + +L Q P + +
Sbjct: 363 LLPVLCQAHG--LTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLT--PEQVVAIASH 418
Query: 202 ISTLCKENQVEEATE 216
V+
Sbjct: 419 DGGKQALETVQRLLP 433
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 71.2 bits (174), Expect = 5e-13
Identities = 79/486 (16%), Positives = 147/486 (30%), Gaps = 71/486 (14%)
Query: 15 GIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGA 74
G K + T L+ LC+AH + PA + G +
Sbjct: 200 GGKQALETVQRLLPVLCQAHGLTPA--------------QVVAIASHDGGKQALETMQRL 245
Query: 75 LRIREQMVEHGCLVTNVTVNVLVHGFCKE--GRIEDAL-SFIQEMVSEGFNPDQF-TYNT 130
L + Q L + V + + K+ ++ L Q G PDQ +
Sbjct: 246 LPVLCQAHG---LPPDQVVAIASNIGGKQALETVQRLLPVLCQAH---GLTPDQVVAIAS 299
Query: 131 LVNGLCKVGHVKQALEVMDMMLQEGFDPD-VFTYNSLISGLCKLGEVEEAVEILNQMILR 189
G + V++ L V+ G PD V S G L V+ + +L Q
Sbjct: 300 HGGGKQALETVQRLLPVLCQAH--GLTPDQVVAIASHDGGKQALETVQRLLPVLCQAH-- 355
Query: 190 DCSPNTI-TYNTLISTLCKENQVEEATE-LARVLTSKGILPD-VCTFNSLIQGLCLTSNF 246
+P+ + + V+ L + G+ PD V S L
Sbjct: 356 GLTPDQVVAIASNGGGKQALETVQRLLPVLCQAH---GLTPDQVVAIASNGGKQALE-TV 411
Query: 247 DVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCAR-------N 299
+ + + G PD+ + ++ S ++AL+ ++ + +
Sbjct: 412 QRLLPVLC--QAHGLTPDQ------VVAIASHDGGKQALETVQRLLPV-LCQTHGLTPAQ 462
Query: 300 VVTYNTLIDGFCKLKRIEEAEEIFDE-MEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLM 358
VV + G L+ +++ + + + V + I G V+ ++
Sbjct: 463 VVAIASHDGGKQALETVQQLLPVLCQAHGLT--PDQVVAIASNIGGKQALATVQRLLPVL 520
Query: 359 DQMIMEGLKPDKF-TYNSLLTYYCRAGDIKRA-ADIVQNMTSNGCEPD-IVTYGTLIGGL 415
Q GL PD+ S ++R + Q PD +V + GG
Sbjct: 521 CQAH--GLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLT---PDQVVAIASNGGGK 575
Query: 416 CKAGRVEVASKLLRSIQMKGIVLTP---QAYNPVIQALFRRKRTTEAMRLFREMMEKADP 472
V+ +L + LT A I + + + + P
Sbjct: 576 QALETVQRLLPVLC----QAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGL-TP 630
Query: 473 PDALTY 478
+
Sbjct: 631 AQVVAI 636
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 64.7 bits (157), Expect = 6e-11
Identities = 54/379 (14%), Positives = 104/379 (27%), Gaps = 64/379 (16%)
Query: 121 FNPDQF-TYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPD-VFTYNSLISGLCKLGEVEE 178
P Q + G + V++ L V+ G P V S G L ++
Sbjct: 187 LTPAQVVAIASNNGGKQALETVQRLLPVLCQAH--GLTPAQVVAIASHDGGKQALETMQR 244
Query: 179 AVEILNQMILRDCSPN-TITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLI 237
+ +L Q P+ + + I V+ L
Sbjct: 245 LLPVLCQAH--GLPPDQVVAIASNIGGKQALETVQRLLP------------------VLC 284
Query: 238 QGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALK-LLKEMESSGC 296
Q LT + VA + ++ L L + +
Sbjct: 285 QAHGLTPDQVVA------------------IASHGGGKQALETVQRLLPVLCQAHGLT-- 324
Query: 297 ARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSV-TYNTLIDGLCKSRRVEDAA 355
VV + G L+ ++ + + G++ + V + G V+
Sbjct: 325 PDQVVAIASHDGGKQALETVQRLLPVLC--QAHGLTPDQVVAIASNGGGKQALETVQRLL 382
Query: 356 QLMDQMIMEGLKPDKF-TYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPD-IVTYGTLIG 413
++ Q GL PD+ S ++R ++ ++G PD +V + G
Sbjct: 383 PVLCQAH--GLTPDQVVAIASNGGKQ-ALETVQRLLPVLCQ--AHGLTPDQVVAIASHDG 437
Query: 414 GLCKAGRVEVASKLLRSIQMKGIVLTP---QAYNPVIQALFRRKRTTEAMRLFREMMEKA 470
G V+ +L + LTP A + + + + +
Sbjct: 438 GKQALETVQRLLPVLC----QTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHG-L 492
Query: 471 DPPDALTYKHVFRGLCNGG 489
P + G
Sbjct: 493 TPDQVVAIASNIGGKQALA 511
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 56.6 bits (136), Expect = 2e-08
Identities = 78/441 (17%), Positives = 142/441 (32%), Gaps = 70/441 (15%)
Query: 104 GRIEDAL-SFIQEMVSEGFNPDQF-TYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPD-V 160
++ L Q G P Q + G + V++ L V+ G PD V
Sbjct: 613 ETVQRLLPVLCQAH---GLTPAQVVAIASHDGGKQALETVQRLLPVLCQAH--GLTPDQV 667
Query: 161 FTYNSLISGLCKLGEVEEAVEILNQMILRDCSPN-TITYNTLISTLCKENQVEEATE-LA 218
S G L V+ + +L Q + + + V+ L
Sbjct: 668 VAIASNGGGKQALETVQRLLPVLCQAH--GLTQEQVVAIASNNGGKQALETVQRLLPVLC 725
Query: 219 RVLTSKGILPD-VCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCS 277
+ G+ PD V S G + + + G P + + ++ S
Sbjct: 726 QAH---GLTPDQVVAIASNGGGKQALETVQRLLPVLC--QAHGLTPAQ------VVAIAS 774
Query: 278 RGMLEEALKLLKEMESSGCA------RNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGI 331
++AL+ ++ + C VV + I G L+ ++ + + G+
Sbjct: 775 NIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLC--QAHGL 832
Query: 332 SRN-SVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKF-------TYNSLLTYYCRA 383
+++ V + I G V+ ++ Q GL PD+ L R
Sbjct: 833 TQDQVVAIASNIGGKQALETVQRLLPVLCQDH--GLTPDQVVAIASNIGGKQALETVQRL 890
Query: 384 GDIKRAA-----DIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVE-----------VASKL 427
+ D V + SNG + + T L+ LC+ + +
Sbjct: 891 LPVLCQDHGLTLDQVVAIASNGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNSGGKQA 950
Query: 428 LRSIQM------KGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADP-PDALTYKH 480
L ++Q + LTP + A+ +A+ + + DP ALT H
Sbjct: 951 LETVQRLLPVLCQDHGLTPNQ----VVAIASNG-GKQALESIVAQLSRPDPALAALTNDH 1005
Query: 481 VFRGLCNGGGPIGEAVDFVIE 501
+ C GG P +AV +
Sbjct: 1006 LVALACLGGRPAMDAVKKGLP 1026
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.0 bits (173), Expect = 5e-13
Identities = 90/594 (15%), Positives = 175/594 (29%), Gaps = 180/594 (30%)
Query: 93 VNVLVHGF-----CKEGRIEDALSFI------QEMVSEGFNPDQFTYNTLVNGLCKVGHV 141
++V F CK+ ++D I ++ + T L L
Sbjct: 22 LSVFEDAFVDNFDCKD--VQDMPKSILSKEEIDHIIMSK-DAVSGTL-RLFWTLLS---- 73
Query: 142 KQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTL 201
KQ E++ ++E + Y L+S + + R S T Y
Sbjct: 74 KQE-EMVQKFVEEVLRIN---YKFLMSPI--------------KTEQRQPSMMTRMYIEQ 115
Query: 202 ISTLCKENQV---------EEATELARVLTS----KGILPDVCTFNSLIQGL------CL 242
L +NQV + +L + L K + LI G+ +
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV---------LIDGVLGSGKTWV 166
Query: 243 TSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVT 302
A+++ K + + + L + +LE KLL +++ + +R+
Sbjct: 167 ------ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS--- 217
Query: 303 YNTLIDGFCKLK-RIEEAEEIFDEMEIQGISRNS------VTYNTLIDGL---CK----S 348
D +K RI + + N V + CK +
Sbjct: 218 -----DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT 272
Query: 349 RRVEDAAQLMDQ--------MIMEGLKPDKFTYNSLLTYY--CRAGDIKRAADIVQNMTS 398
R + L L PD+ SLL Y CR D+ R
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVK--SLLLKYLDCRPQDLPREVL------- 323
Query: 399 NGCEPDIVTYGTLIGGLCKAG--------RVEVASKLLRSIQMKGIVLTP----QAYN-- 444
P + ++I + G V KL I+ VL P + ++
Sbjct: 324 -TTNPRRL---SIIAESIRDGLATWDNWKHVNC-DKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 445 ---------P--VIQALFRRKRTTEAMRLFREMMEKA----DPPDALTYKHVFRGLCNGG 489
P ++ ++ ++ M + ++ + + P ++ +
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP---SI---- 431
Query: 490 GPIGEAVDFVIEMLERGFL-PEFSSFYMLAEGLVSLGKEETLVELIDMV--------MDK 540
++ +++ L Y + + S ++ + +D +
Sbjct: 432 -----YLELKVKLENEYALHRSIVDHYNIPKTFDS---DDLIPPYLDQYFYSHIGHHLKN 483
Query: 541 AKFSDRETSMVRGFL-------KIRKFQDALATFGDILDSRMPRKTFRSRSKYF 587
+ +R T FL KIR A G IL++ K ++ Y
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK---PYI 534
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 1e-06
Identities = 53/381 (13%), Positives = 106/381 (27%), Gaps = 120/381 (31%)
Query: 302 TYNTLI----DGFCK---LKRIEEAE-EIFDEMEIQGI----SRNSVTYNTLIDGLCKSR 349
Y ++ D F K +++ I + EI I S T L L +
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL-RLFWTLLSKQ 75
Query: 350 R------VEDAAQ-----LMDQMIMEGLKP----DKFTY--------NSLLTYY--CRAG 384
VE+ + LM + E +P + N + Y R
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135
Query: 385 DIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMK---------- 434
+ + + +++ G + G +G+ VA + S +++
Sbjct: 136 PYLKLRQALLELRP---AKNVLIDG--VLG---SGKTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 435 --GIVLTPQAYNPVIQALFR----------------RKRTTEAMRLFREMMEKADPPDAL 476
+P+ ++Q L + R R +++ + L
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 477 TYKHVFRGLCNGGGPIGEAVDF------------VIEMLERGFLPEFSSFYMLAEGLVSL 524
V + N A + V + L S L ++L
Sbjct: 248 L---VLLNVQNAK--AWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS----LDHHSMTL 298
Query: 525 GKEETLVELIDMVMDKAKFSD--RET--------SMVRGFLKIR-------------KFQ 561
+E L+ +D + D RE S++ ++ K
Sbjct: 299 TPDEVK-SLLLKYLDC-RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 562 DALATFGDILDSRMPRKTFRS 582
+ + ++L+ RK F
Sbjct: 357 TIIESSLNVLEPAEYRKMFDR 377
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 2e-10
Identities = 65/396 (16%), Positives = 138/396 (34%), Gaps = 49/396 (12%)
Query: 102 KEGRIEDALSFIQEMVSEGFNPDQF-TYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDV 160
+ G E A ++ + PD L + + + ++ + ++ +P +
Sbjct: 11 QAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK--QNPLL 66
Query: 161 F-TYNSLISGLCKLGEVEEAVEILNQMILRDCSPN-TITYNTLISTLCKENQVEEA-TEL 217
Y++L + + G+++EA+E + P+ Y L + L +E A
Sbjct: 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAY 124
Query: 218 ARVLTSKGILPD-VCTFNSLIQGLCLTS--NFDVAMELFQEMKTKGCQPDEF-TYNMLID 273
L PD C + L G L + + A + K QP+ ++ L
Sbjct: 125 VSALQYN---PDLYCVRSDL--GNLLKALGRLEEAKACYL--KAIETQPNFAVAWSNLGC 177
Query: 274 SLCSRGMLEEALKLLKEMESSGCA-----RNVVTYNTLIDGFCKLKRIEEAEEIFDE-ME 327
++G + A+ ++ A + Y L + + + + A + +
Sbjct: 178 VFNAQGEIWLAIHHFEK------AVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS 231
Query: 328 IQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKF-TYNSLLTYYCRAGDI 386
+ ++V + L + ++ A + I L+P Y +L G +
Sbjct: 232 LS--PNHAVVHGNLACVYYEQGLIDLAIDTYRRAI--ELQPHFPDAYCNLANALKEKGSV 287
Query: 387 KRAADIVQNMTSNGCEPDIV-TYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTP---QA 442
A D P + L + G +E A +L R K + + P A
Sbjct: 288 AEAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYR----KALEVFPEFAAA 341
Query: 443 YNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTY 478
++ + L ++ + EA+ ++E + P A Y
Sbjct: 342 HSNLASVLQQQGKLQEALMHYKEAIRI-SPTFADAY 376
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 3e-10
Identities = 52/308 (16%), Positives = 122/308 (39%), Gaps = 44/308 (14%)
Query: 100 FCKEGRIEDALSFIQEMVSEGFNPDQ-FTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDP 158
+ + G++++A+ + + PD Y L L G ++ A++ LQ ++P
Sbjct: 77 YKERGQLQEAIEHYRHALR--LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ--YNP 132
Query: 159 DVF-TYNSLISGLCKLGEVEEAVEILNQMILRDCSPN-TITYNTLISTLCKENQVEEATE 216
D++ + L + L LG +EEA + I PN + ++ L + ++ A
Sbjct: 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ--PNFAVAWSNLGCVFNAQGEIWLAIH 190
Query: 217 -LARVLTSKGILPDVC-TFNSLIQGLCLTS--NFDVAMELFQ---EMKTKGCQPDEF-TY 268
+ +T P+ + +L G L FD A+ + + P+ +
Sbjct: 191 HFEKAVTLD---PNFLDAYINL--GNVLKEARIFDRAVAAYLRALSLS-----PNHAVVH 240
Query: 269 NMLIDSLCSRGMLEEALKLLKEMESSGCA-----RNVVTYNTLIDGFCKLKRIEEAEEIF 323
L +G+++ A+ + A Y L + + + EAE+ +
Sbjct: 241 GNLACVYYEQGLIDLAIDTYRR------AIELQPHFPDAYCNLANALKEKGSVAEAEDCY 294
Query: 324 DE-MEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKF-TYNSLLTYYC 381
+ + + ++ + N L + + +E+A +L + + + P+ +++L +
Sbjct: 295 NTALRLC--PTHADSLNNLANIKREQGNIEEAVRLYRKAL--EVFPEFAAAHSNLASVLQ 350
Query: 382 RAGDIKRA 389
+ G ++ A
Sbjct: 351 QQGKLQEA 358
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 4e-06
Identities = 40/233 (17%), Positives = 79/233 (33%), Gaps = 32/233 (13%)
Query: 170 LCKLGEVEEAVEILNQMILRDCSPN-TITYNTLISTLCKENQVEEATEL-ARVLTSKGIL 227
+ G+ E A Q+ ++ P+ T L S + +++ + +
Sbjct: 9 EYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK---QN 63
Query: 228 PD-VCTFNSLIQGLCLTS--NFDVAMELFQEMKTKGCQPD-EFTYNMLIDSLCSRGMLEE 283
P +++L G A+E ++ +PD Y L +L + G +E
Sbjct: 64 PLLAEAYSNL--GNVYKERGQLQEAIEHYR--HALRLKPDFIDGYINLAAALVAAGDMEG 119
Query: 284 ALKLLKEMESSGCA-----RNVVTYNTLIDGFCKLKRIEEAEEIFDEM-EIQGISRNSVT 337
A++ A + L + L R+EEA+ + + E Q +V
Sbjct: 120 AVQAYVS------ALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ--PNFAVA 171
Query: 338 YNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKF-TYNSLLTYYCRAGDIKRA 389
++ L + A ++ + L P+ Y +L A RA
Sbjct: 172 WSNLGCVFNAQGEIWLAIHHFEKAVT--LDPNFLDAYINLGNVLKEARIFDRA 222
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 9e-08
Identities = 44/313 (14%), Positives = 90/313 (28%), Gaps = 57/313 (18%)
Query: 100 FCKEGRIEDALSFIQEMVSEGFNPDQF-TYNTLVNGLCKVGHVKQALEVMDMMLQEGFDP 158
G++ DALS V +PD + Y +G K AL + ++Q
Sbjct: 36 LLAAGQLADALSQFHAAVD--GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ--LKM 91
Query: 159 D-VFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATEL 217
D L K G+++EA + +++ + P+ S L K ++++
Sbjct: 92 DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQ 149
Query: 218 ARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFT-YNMLIDSLC 276
A G + + I D +E+ + + +
Sbjct: 150 ALNAFGSG------DYTAAIA------FLDKILEV---------CVWDAELRELRAECFI 188
Query: 277 SRGMLEEALKLLK---EMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDE-------- 325
G +A+ LK ++++ N + + + +L E + E
Sbjct: 189 KEGEPRKAISDLKAASKLKND----NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH 244
Query: 326 ---MEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCR 382
+ + L + R DA + ++ +P Y
Sbjct: 245 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRS-KERI 301
Query: 383 A------GDIKRA 389
A
Sbjct: 302 CHCFSKDEKPVEA 314
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 38/330 (11%), Positives = 94/330 (28%), Gaps = 56/330 (16%)
Query: 100 FCKEGRIEDALSFIQEMVSEGFNPD----------------QFTYNTLVNGLCKVGHVKQ 143
K+G++++A ++++ NP + G
Sbjct: 104 LLKQGKLDEAEDDFKKVLK--SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTA 161
Query: 144 ALEVMDMMLQEGFDPD-VFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLI 202
A+ +D +L+ K GE +A+ L + NT + +
Sbjct: 162 AIAFLDKILE--VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKIS 218
Query: 203 STLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQ 262
+ + E + + + + L L + ++++K
Sbjct: 219 TLYYQLGDHELS------------------LSEVRECLKLDQDHKRCFAHYKQVKKLNKL 260
Query: 263 PDEFTYNMLIDSLCSRGMLEEALKLLK---EMESSGCARNVVTYNTLIDGFCKLKRIEEA 319
+ + L G +A + + E S V + + F K ++ EA
Sbjct: 261 IES------AEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEA 314
Query: 320 EEIFDE-MEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKP-DKFTYNSLL 377
+ E ++++ N + ++A Q + D+ L
Sbjct: 315 IRVCSEVLQME--PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLE 370
Query: 378 TYYCRAGDIKRA-ADIVQNMTSNGCEPDIV 406
++ + + N + +I+
Sbjct: 371 KAQRLLKQSQKRDYYKILGVKRNAKKQEII 400
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 3e-07
Identities = 43/313 (13%), Positives = 87/313 (27%), Gaps = 57/313 (18%)
Query: 100 FCKEGRIEDALSFIQEMVSEGFNPDQF-TYNTLVNGLCKVGHVKQALEVMDMMLQEGFDP 158
G++ DALS V +PD + Y +G K AL + ++
Sbjct: 13 LLAAGQLADALSQFHAAVD--GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIA--LKM 68
Query: 159 D-VFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATEL 217
D L K G+++EA + +++ + P+ S L K ++++
Sbjct: 69 DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADEMQRLRSQ 126
Query: 218 ARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEF-TYNMLIDSLC 276
A +T D +E+ + + +
Sbjct: 127 ALDAFDGADYTA-----------AITF-LDKILEV---------CVWDAELRELRAECFI 165
Query: 277 SRGMLEEALKLLK---EMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDE-------- 325
G +A+ LK +++S N + + + +L E + E
Sbjct: 166 KEGEPRKAISDLKAASKLKSD----NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH 221
Query: 326 ---MEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCR 382
+ + L + R DA + ++ +P Y
Sbjct: 222 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSVAEYTVRS-KERI 278
Query: 383 A------GDIKRA 389
A
Sbjct: 279 CHCFSKDEKPVEA 291
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 35/274 (12%), Positives = 79/274 (28%), Gaps = 52/274 (18%)
Query: 102 KEGRIEDALSFIQEMVSEGFNPD----------------QFTYNTLVNGLCKVGHVKQAL 145
K+G++++A ++++ NP + A+
Sbjct: 83 KQGKLDEAEDDFKKVLK--SNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAI 140
Query: 146 EVMDMMLQEGFDPD-VFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLIST 204
+D +L+ K GE +A+ L + S NT + + +
Sbjct: 141 TFLDKILE--VCVWDAELRELRAECFIKEGEPRKAISDLKA-ASKLKSDNTEAFYKISTL 197
Query: 205 LCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPD 264
+ E + R + L L + ++++K +
Sbjct: 198 YYQLGDHELSLSEVR------------------ECLKLDQDHKRCFAHYKQVKKLNKLIE 239
Query: 265 EFTYNMLIDSLCSRGMLEEALKLLK---EMESSGCARNVVTYNTLIDGFCKLKRIEEAEE 321
+ L G +A + + E S V + + F K ++ EA
Sbjct: 240 S------AEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293
Query: 322 IFDE-MEIQGISRNSVTYNTLIDGLCKSRRVEDA 354
I E ++++ N + ++A
Sbjct: 294 ICSEVLQME--PDNVNALKDRAEAYLIEEMYDEA 325
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 8e-07
Identities = 41/310 (13%), Positives = 86/310 (27%), Gaps = 39/310 (12%)
Query: 102 KEGRIEDALSFIQEMVSEGFNPDQF-TYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDV 160
LS + ++ A ++ + P
Sbjct: 221 STDMYHSLLSANTVDDPL--RENAALALCYTGIFHFLKNNLLDAQVLLQESIN--LHPTP 276
Query: 161 FTYNSLISGLCKLGEVEEAVEILNQMILRDCSPN-TITYNTLISTLCKENQVEEATELAR 219
+Y L L +E + + + + P TY + A E +
Sbjct: 277 NSYIFLALTLADKENSQEFFKFFQKAVDLN--PEYPPTYYHRGQMYFILQDYKNAKEDFQ 334
Query: 220 VLTSKGILPD-VCTFNSLIQGLCLTS--NFDVAMELFQEMKTKGCQPDEF-TYNMLIDSL 275
++ + P+ V + L L F + F E K K P + L
Sbjct: 335 --KAQSLNPENVYPYIQL--ACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEIL 388
Query: 276 CSRGMLEEALKLLK---EMESS------------GCARNVVTYNTLIDGFCKLKRIEEAE 320
RG + A+K +E G A + ++ ++ A
Sbjct: 389 TDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAI 448
Query: 321 EIFDE-MEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTY 379
++ + E+ R+ L + ++++A +L + + L T
Sbjct: 449 KLLTKACELD--PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI--LARTMDEKLQATT- 503
Query: 380 YCRAGDIKRA 389
+ A I++
Sbjct: 504 FAEAAKIQKR 513
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 36/343 (10%), Positives = 88/343 (25%), Gaps = 67/343 (19%)
Query: 100 FCKEGRIEDALSFIQEMVSEGFNPDQFT-YNTLVNGLCKVGHVKQALEVMDMMLQEGFDP 158
F +A+ + Q + +P++ Y+ + G +++ +E L+ P
Sbjct: 35 FFTAKNFNEAIKYYQYAIE--LDPNEPVFYSNISACYISTGDLEKVIEFTTKALE--IKP 90
Query: 159 D-VFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPN----------------------- 194
D S LG +A+ L+ + L
Sbjct: 91 DHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENL 150
Query: 195 TITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFN----SLIQGLCLTSN----- 245
+ L + + + ++ L L +
Sbjct: 151 SKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEG 210
Query: 246 -------FDVAMELFQE-----MKTKGCQPDEF-TYNMLIDSLCSRGMLEEALKLLK--- 289
+ +++ + + + L +A LL+
Sbjct: 211 YLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESI 270
Query: 290 EMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDE-MEIQGISRNSVTYNTLIDGLCKS 348
+ +Y L + +E + F + +++ TY
Sbjct: 271 NLHP-----TPNSYIFLALTLADKENSQEFFKFFQKAVDLN--PEYPPTYYHRGQMYFIL 323
Query: 349 RRVEDAAQLMDQMIMEGLKPDK-FTYNSL-LTYYCRAGDIKRA 389
+ ++A + + L P+ + Y L Y + G +
Sbjct: 324 QDYKNAKEDFQKAQS--LNPENVYPYIQLACLLY-KQGKFTES 363
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 2e-06
Identities = 46/345 (13%), Positives = 102/345 (29%), Gaps = 35/345 (10%)
Query: 67 EEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQF 126
+ DG+ L + + H + + + A ++++ +
Sbjct: 61 NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPN 118
Query: 127 TYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEIL--- 183
L C G +A ++ ++ ++ L KL + + A+ +L
Sbjct: 119 DAFWLAQVYCCTGDYARAKCLL--TKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGET 176
Query: 184 ----------NQMILRDCS--PNTITYNTLISTLCKENQVEEATE-LARVLTSKGILPD- 229
N+++++D + + A E L
Sbjct: 177 NPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD---AKC 233
Query: 230 VCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFT---YNMLIDSLCSRGMLEEALK 286
F+ L+ LT++ + + L T + F Y + ++ L A
Sbjct: 234 YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293
Query: 287 LLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDE-MEIQGISRNSVTYNTLIDGL 345
L + ++ D R + I + +EI N Y + L
Sbjct: 294 YLSSINGLE--KSSDLLLCKADTLFVRSRFIDVLAITTKILEID--PYNLDVYPLHLASL 349
Query: 346 CKSRRVEDAAQLMDQMIMEGLKPDKF-TYNSLLTYYCRAGDIKRA 389
+S + + ++ P+K T+ ++ YY I A
Sbjct: 350 HESGEKNKLYLISNDLVD--RHPEKAVTWLAVGIYYLCVNKISEA 392
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 3e-06
Identities = 58/415 (13%), Positives = 122/415 (29%), Gaps = 70/415 (16%)
Query: 14 RGIKPDVSTFNILIKALCKAHQIRPAILMMEE----MPGYGLAPDERTFTTLMQGLIEEG 69
GIK + S + + A +E A D+ L+ EE
Sbjct: 194 GGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTAD-EEW 252
Query: 70 NLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYN 129
+L L E + ++ + L E + A ++ + + D
Sbjct: 253 DLVLKLNYSTYSKEDAAFLRSLYMLKLNK-TSHEDELRRAEDYLSSINGLEKSSDL--LL 309
Query: 130 TLVNGLCKVGHVKQALEVMDMMLQEGFDPD-VFTYNSLISGLCKLGEVEEAVEILNQMIL 188
+ L L + +L+ DP + Y ++ L + GE + I N ++
Sbjct: 310 CKADTLFVRSRFIDVLAITTKILEI--DPYNLDVYPLHLASLHESGEKNKLYLISNDLV- 366
Query: 189 RDCSPNT-ITYNTLISTLCKENQVEEA------------------TELARVLTSKG---- 225
D P +T+ + N++ EA A +G
Sbjct: 367 -DRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQ 425
Query: 226 ----------ILPD-VCTFNSLIQGLCL--TSNFDVAMELFQEMKTKGCQP-DEFTYNML 271
+ + L G+ N +A E Q + D N L
Sbjct: 426 AISAYTTAARLFQGTHLPYLFL--GMQHMQLGNILLANEYLQ--SSYALFQYDPLLLNEL 481
Query: 272 IDSLCSRGMLEEALKLLKE------MESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDE 325
++ ++ A+ + S T+ L + KLK + A + ++
Sbjct: 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541
Query: 326 -MEIQGISRNSVTYNTLIDGLC--KSRRVEDAAQLMDQMIMEGLKPD-KFTYNSL 376
+ + + ++ + + L + A + + + + P+ + L
Sbjct: 542 GLLLS--TNDANVHTAI--ALVYLHKKIPGLAITHLHESL--AISPNEIMASDLL 590
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 5e-04
Identities = 42/292 (14%), Positives = 85/292 (29%), Gaps = 35/292 (11%)
Query: 209 NQVEEATELA-RVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFT 267
Q + A + +VL I + L Q C T ++ A L +
Sbjct: 98 QQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSAC 152
Query: 268 YNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDG---------------FCK 312
+ L + AL LL E + DG +
Sbjct: 153 RYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTN 212
Query: 313 LKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQL---MDQMIMEGLKPD 369
L + A+E + E + ++ ++ L+ + E L E
Sbjct: 213 LSNFDRAKECYKEA-LMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFL 271
Query: 370 KFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLR 429
+ Y L +++RA D + ++ D+ L R +
Sbjct: 272 RSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDL--LLCKADTLFVRSRFIDVLAITT 329
Query: 430 SIQMKGIVLTPQ---AYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTY 478
I + + P Y + +L + + +++++ P A+T+
Sbjct: 330 KI----LEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTW 376
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 3e-05
Identities = 32/233 (13%), Positives = 72/233 (30%), Gaps = 31/233 (13%)
Query: 102 KEGRIEDALSFIQEMVSEGFNPD-QFTYNTLVNGLCKVGHVKQALEVMDMMLQEG--FDP 158
++A+ +++ + NPD Q+ L L K+ + + +++E P
Sbjct: 187 NWPPSQNAIDPLRQAIR--LNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP 244
Query: 159 D-VFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPN-TITYNTLISTLCKENQVEEATE 216
S + E ++A+E+L + + PN + +
Sbjct: 245 GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI--PNNAYLHC----------------Q 286
Query: 217 LARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPD-EFTYNMLIDSL 275
+ +K N + L A+ + K + ++L
Sbjct: 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLK--KADEANDNLFRVCSILASLH 344
Query: 276 CSRGMLEEALKLLK---EMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDE 325
EEA + E + A+ ++ ++K ++A F E
Sbjct: 345 ALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIE 397
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 5e-04
Identities = 35/247 (14%), Positives = 80/247 (32%), Gaps = 36/247 (14%)
Query: 267 TYNMLIDSLCSRGMLEEALKLLKEME--------SSGCARNVVTYNTLIDGFCKLKRIEE 318
N+L +G E AL+ L++ E R++VT+ + + R+ +
Sbjct: 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSD 112
Query: 319 AEEIFDEMEIQGISRNSVTYNTLIDGLCK---------SRRVEDAAQLMDQMIMEGLKPD 369
+ D+++ +S + C+ + E A ++ + KP
Sbjct: 113 VQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALE--KKPK 170
Query: 370 KF-TYNSLLTYYCRAGDIKRAADIVQNMT-SNGCEPD----IVTYGTLIGGLCK-AGRVE 422
+ L R + + + + + + PD V + + +
Sbjct: 171 NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEG 230
Query: 423 VASKLLRSIQMKGIVLTP---QAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYK 479
KL+ + + P + R+ +A+ L ++ +E P +A +
Sbjct: 231 EGEKLVE----EALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY-IPNNAYLHC 285
Query: 480 HVFRGLC 486
G C
Sbjct: 286 Q--IGCC 290
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 5e-05
Identities = 34/261 (13%), Positives = 79/261 (30%), Gaps = 25/261 (9%)
Query: 122 NPDQF-TYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAV 180
+ A E + ++ P V +Y + + + E
Sbjct: 233 KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE--LFPRVNSYIYMALIMADRNDSTEYY 290
Query: 181 EILNQMILRDCSPNTITYNTLISTLCKENQVEEATE-LARVLTSKGILPD-VCTFNSLIQ 238
++ + D + N+ Y ++A + + + P+ + + L
Sbjct: 291 NYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKE---LDPENIFPYIQLAC 346
Query: 239 GLCLTSNFDVAMELFQEMKTKGCQPDEF-TYNMLIDSLCSRGMLEEALKLLKEM-----E 292
+ FD LF + K P+ N + L + ++ALK +
Sbjct: 347 LAYRENKFDDCETLFS--EAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK 404
Query: 293 SSGCARN---VVTYNTLIDGFCKLKRIEEAEEIFDE-MEIQGISRNSVTYNTLIDGLCKS 348
G +V TL+ ++ EA + ++ ++ R+ L +
Sbjct: 405 LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD--PRSEQAKIGLAQMKLQQ 462
Query: 349 RRVEDAAQLMDQMIMEGLKPD 369
+++A L ++ L
Sbjct: 463 EDIDEAITLFEESAD--LART 481
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 8e-04
Identities = 56/409 (13%), Positives = 121/409 (29%), Gaps = 65/409 (15%)
Query: 100 FCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPD 159
F + + +DA+ + + D Y+ L VG +K+ +E+ L+ PD
Sbjct: 16 FFRNKKYDDAIKYYNWALE--LKEDPVFYSNLSACYVSVGDLKKVVEMSTKALE--LKPD 71
Query: 160 -VFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELA 218
S LG+ +A+ L+ + L + L L K+ + +
Sbjct: 72 YSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFG 131
Query: 219 RVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSR 278
+ T+ ++ T + + + + M ++ + +
Sbjct: 132 DIDTATATPTELSTQPAKER-----KDKQENLPSVTSMA---------SFFGIFKPELTF 177
Query: 279 GMLEEALKLLKEME---SSGCARNVVTYNTLIDGFCK-LKRIEEAEEIFDEMEIQGISRN 334
+E+ + KE+ S+ R+ +Y+ + F K + EE + +E + + +
Sbjct: 178 ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNE-DEKLKEKL 236
Query: 335 SVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRA----- 389
+++ A + + + I L P +Y + D
Sbjct: 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIE--LFPRVNSYIYMALIMADRNDSTEYYNYFD 294
Query: 390 ---------ADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTP 440
+ + + G + + A K K L P
Sbjct: 295 KALKLDSNNSSVYYHR------------GQM---NFILQNYDQAGKDFD----KAKELDP 335
Query: 441 ---QAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLC 486
Y + +R + + LF E K P F
Sbjct: 336 ENIFPYIQLACLAYRENKFDDCETLFSEAKRK-FPEAPEVPN--FFAEI 381
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 6e-05
Identities = 44/341 (12%), Positives = 104/341 (30%), Gaps = 43/341 (12%)
Query: 209 NQVEEATELAR----VLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPD 264
+EA LA+ L + + L + L ++ L Q+ + Q D
Sbjct: 28 GNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD 87
Query: 265 E-----FTYNMLIDSLCSRG-------MLEEALKLLKEMESSGCARNVVTYNTLIDGFCK 312
++ + L ++G E+A +L+ E +
Sbjct: 88 VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA 147
Query: 313 LKRIEEAEEIFDE----MEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQ----MIME 364
R++EAE + + LI +++A +++ +
Sbjct: 148 WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG 207
Query: 365 GLKPDKFTY--NSLLTYYCRAGDIKRAADIVQ--NMTSNGCEPDIVTYGTLIGGLCKA-G 419
D + + Y+ GD AA+ ++ + I G
Sbjct: 208 KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLG 267
Query: 420 RVEVASKLLRSI-----QMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPD 474
E A +L + ++ + + + Q ++ R ++A R+ + ++ A+
Sbjct: 268 EFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG 327
Query: 475 ALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFY 515
+ G + + + ++++ LPE
Sbjct: 328 FI------SHFVIEGEAMAQQLR---QLIQLNTLPELEQHR 359
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 5e-04
Identities = 38/253 (15%), Positives = 74/253 (29%), Gaps = 29/253 (11%)
Query: 65 LIEEGNLDGALRIREQMVEH----GCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEG 120
I +GN D A R+ + +E V +VL +G + +L+ +Q+
Sbjct: 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA 83
Query: 121 FNPDQ-----FTYNTLVNGLCKVGHVKQALEVMDMMLQ---EGFDPDV----FTYNSLIS 168
D ++ L G ++ A E + Q E + F
Sbjct: 84 RQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQ 143
Query: 169 GLCKLGEVEEAVEILNQ--MILRDCSPNT--ITYNTLISTLCKENQVEEA----TELARV 220
L ++EA +L P LI ++ A L +
Sbjct: 144 LLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENL 203
Query: 221 LTSKGILPDVCTFNSLIQGLCLTS--NFDVAMELFQEMKTKGCQPDEFT---YNMLIDSL 275
L + D + + ++ + + A + + F + + +
Sbjct: 204 LGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 263
Query: 276 CSRGMLEEALKLL 288
G E A +L
Sbjct: 264 ILLGEFEPAEIVL 276
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 1e-04
Identities = 44/319 (13%), Positives = 96/319 (30%), Gaps = 63/319 (19%)
Query: 102 KEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPD-V 160
E I +++ +QE N D +L K ++ +++++ DP
Sbjct: 7 SETVIPESVDGLQE------NLD--VVVSLAERHYYNCDFKMCYKLTSVVMEK--DPFHA 56
Query: 161 FTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNT-ITYNTL-ISTLCKENQVEEA---- 214
I L +L + E + ++++ D P+ +++ + L ++ E A
Sbjct: 57 SCLPVHIGTLVELNKANELFYLSHKLV--DLYPSNPVSWFAVGCYYLMVGHKNEHARRYL 114
Query: 215 ---TEL----ARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFT 267
T L + G +F S D AM +
Sbjct: 115 SKATTLEKTYGPAWIAYGH-----SFAVE-------SEHDQAMAAYF--TAAQLMKGCHL 160
Query: 268 -YNMLIDSLCSRGMLEEALKLLK---EMESSGCARNVVTYNTLIDGFC--KLKRIEEAEE 321
+ + A + + + + + G + + AE+
Sbjct: 161 PMLYIGLEYGLTNNSKLAERFFSQALSI----APEDPFVMHEV--GVVAFQNGEWKTAEK 214
Query: 322 IFDE--------MEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKF-T 372
F + + + N L K ++ +A Q + L P T
Sbjct: 215 WFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQAL--VLIPQNAST 272
Query: 373 YNSLLTYYCRAGDIKRAAD 391
Y+++ + G+ + A D
Sbjct: 273 YSAIGYIHSLMGNFENAVD 291
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 1e-04
Identities = 51/297 (17%), Positives = 91/297 (30%), Gaps = 53/297 (17%)
Query: 142 KQALEVMDMMLQEGF---DPDVF-TYNSLISGLCKLGEVEEAVEILNQ------MILRDC 191
+ + +G P T ++L+ G E AV + Q
Sbjct: 5 HHHSSGRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHD 64
Query: 192 SPNTIT-YNTLISTLCKENQVEEATEL-ARVLT-SKGIL----PDV-CTFNSLIQGLCLT 243
P+ T N L +N+ ++A L L + L P V T N+L +
Sbjct: 65 HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNL--AVLYG 122
Query: 244 S--NFDVAMELFQ---EMKTKGCQPDE----FTYNMLIDSLCSRGMLEEALKLLK---EM 291
+ A L + E++ K D N L ++G EE + E+
Sbjct: 123 KRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182
Query: 292 ESSGCARN----VVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSV----------T 337
+ + T N L + K + ++AE ++ EI +
Sbjct: 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLY--KEILTRAHEREFGSVDDENKPI 240
Query: 338 YNTLIDGLCKSRRVEDAAQLMDQMI-MEGLKPD----KFTYNSLLTYYCRAGDIKRA 389
+ + + +D + + K D T +L Y R G + A
Sbjct: 241 WMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAA 297
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 4e-04
Identities = 54/277 (19%), Positives = 92/277 (33%), Gaps = 45/277 (16%)
Query: 127 TYNTLVNGLCKVGHVKQALE----VMDMMLQE-GFD-PDVFT-YNSLISGLCKLGEVEEA 179
T + LV G + A+ ++ + + G D PDV T N L + ++A
Sbjct: 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDA 88
Query: 180 VEILNQ------MILRDCSPNT-ITYNTLISTLCKENQVEEATEL-ARVL-TSKGIL--- 227
+LN L P T N L K + +EA L R L + +L
Sbjct: 89 ANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD 148
Query: 228 -PDV-CTFNSLIQGLCLTS--NFDVAMELFQ---EMKTKGCQPDE----FTYNMLIDSLC 276
PDV N+L L + ++ +Q E+ PD+ T N L
Sbjct: 149 HPDVAKQLNNL--ALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYL 206
Query: 277 SRGMLEEALKLLKEMESSGCAR--------NVVTYNTLIDGFCKLKRIEEAEEIFD-EME 327
+G ++A L KE+ + R N + + + ++ +
Sbjct: 207 KQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266
Query: 328 IQGISRNS----VTYNTLIDGLCKSRRVEDAAQLMDQ 360
+ +S T L + + E A L +
Sbjct: 267 YKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEA 303
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 37/237 (15%), Positives = 64/237 (27%), Gaps = 54/237 (22%)
Query: 162 TYNSLISGLCKLGEVEEAVEILNQMILRDCSPN-TITYNTLISTLCKENQVEEATELARV 220
Y L G + G E+A L + + D P+ + L E + + A E
Sbjct: 39 AYIQLGLGYLQRGNTEQAKVPLRKALEID--PSSADAHAALAVVFQTEMEPKLADE---- 92
Query: 221 LTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPD--EFTYNMLIDSLCSR 278
+ A+ N L +
Sbjct: 93 ------------------------EYRKALAS---------DSRNARVLNNYGG-FLYEQ 118
Query: 279 GMLEEALKLLKE-MESSGCARNVVTYNTLIDGFC--KLKRIEEAEEIFDE-MEIQGISRN 334
EEA + L E + + + L G ++K+ +A+E F++ + +
Sbjct: 119 KRYEEAYQRLLEASQDTLYPERSRVFENL--GLVSLQMKKPAQAKEYFEKSLRLN--RNQ 174
Query: 335 SVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKF-TYNSLLTYYCRAGDIKRAA 390
+ D L K R A Q D + + D AA
Sbjct: 175 PSVALEMADLLYKEREYVPARQYYDLFA--QGGGQNARSLLLGIRLAKVFEDRDTAA 229
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 5e-04
Identities = 33/299 (11%), Positives = 80/299 (26%), Gaps = 32/299 (10%)
Query: 125 QFTYNTLVNGLCKVGHVKQALEVMDMM-----LQEGFDPDVFTYNSLISGLC--KLGEVE 177
F + +++ L V +++ Q+ + Y+ G+ E
Sbjct: 59 CFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYV 118
Query: 178 EAVEILNQ--MILR---DCSPNTITYNTLISTLCKENQVEEATEL---ARVLTSKGILPD 229
EA+ + L D + + Q + A + L
Sbjct: 119 EAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYS 178
Query: 230 VCTFNSLIQ-GLCLTS--NFDVAMELFQE----MKTKGCQPDE-FTYNMLIDSLCSRGML 281
+ T SL ++D A+ + + + +S G
Sbjct: 179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDD 238
Query: 282 EEALKLLKE----MESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDE-MEIQ---GISR 333
+ A++ ++ L CK + ++A + +E ++
Sbjct: 239 QMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKF 298
Query: 334 NSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPD-KFTYNSLLTYYCRAGDIKRAAD 391
+ L ++ L+ + L + S + + ++AA
Sbjct: 299 YKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAA 357
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 5e-04
Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 5/98 (5%)
Query: 104 GRIEDALSFIQEMVSEGFNPDQF--TYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPD-V 160
G A+ + ++ ++ G Y L + +G ++A V+ +++ P+
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQ 61
Query: 161 FTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITY 198
L LG E+ VE+L ++I TI
Sbjct: 62 ALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQS 99
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 8e-04
Identities = 33/276 (11%), Positives = 67/276 (24%), Gaps = 29/276 (10%)
Query: 163 YNSLISGLCKLGEVEEAVEILNQMI-----LRDCSPNTITYNTLISTLCKENQVEEATEL 217
Y ++E+A + Q R + L ++ EA +
Sbjct: 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQY 98
Query: 218 ----ARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEF-----TY 268
+ + G L + A+ L+Q+ +
Sbjct: 99 IEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELI 158
Query: 269 NMLIDSLCSRGMLEEALKLLKE-----MESSGCARNVVTYNTLIDGFCKLKRIEEAEEIF 323
L + +EA L++ E + A++
Sbjct: 159 GKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCV 218
Query: 324 DE-MEIQGI--SRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYY 380
E I G S + L+ + E ++ ++ + D L
Sbjct: 219 RESYSIPGFSGSEDCAALEDLLQA-YDEQDEEQLLRVCRSPLVTYMDNDYAKLAISLKVP 277
Query: 381 CRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLC 416
G K+ + + + GGLC
Sbjct: 278 GGGGGKKKPSASASAQPQEEEDDE------YAGGLC 307
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282 | Back alignment and structure |
|---|
Score = 40.5 bits (94), Expect = 9e-04
Identities = 18/135 (13%), Positives = 34/135 (25%), Gaps = 11/135 (8%)
Query: 65 LIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPD 124
+GN A+ E G + +V+G R D + ++ PD
Sbjct: 112 EAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYG--AAERWTDVIDQVKSAGKW---PD 166
Query: 125 QF----TYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLC--KLGEVEE 178
+F + +A + + + G
Sbjct: 167 KFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESA 226
Query: 179 AVEILNQMILRDCSP 193
AV +L + P
Sbjct: 227 AVALLEWLQTTHPEP 241
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 587 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.97 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.97 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.96 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.96 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.96 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.94 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.94 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.94 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.93 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.92 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.91 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.91 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.91 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.9 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.9 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.9 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.89 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.89 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.89 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.89 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.88 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.88 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.87 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.86 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.84 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.84 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.84 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.84 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.83 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.82 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.8 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.8 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.79 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.79 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.78 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.78 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.78 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.78 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.77 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.77 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.76 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.75 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.73 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.73 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.73 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.71 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.71 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.71 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.71 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.71 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.71 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.71 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.71 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.69 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.69 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.69 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.69 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.68 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.67 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.67 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.66 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.65 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.65 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.6 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.6 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.59 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.58 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.58 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.57 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.56 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.55 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.55 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.53 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.53 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.51 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.5 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.5 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.48 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.48 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.47 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.46 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.46 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.46 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.45 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.42 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.41 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.4 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.39 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.39 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.38 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.38 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.38 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.37 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.36 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.36 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.34 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.33 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.33 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.33 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.32 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.31 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.31 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.29 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.29 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.28 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.28 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.28 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.27 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.26 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.21 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.21 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.21 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.21 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.19 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.18 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.17 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.15 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.15 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.13 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.12 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.12 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.09 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.08 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.06 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.05 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.05 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.05 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.05 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.04 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.04 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.04 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.04 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.03 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.03 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.02 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.01 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.01 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.01 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.0 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.0 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.0 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.98 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.98 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.98 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.98 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.97 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.97 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.97 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.96 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.96 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.95 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.94 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.91 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.91 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.9 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.89 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.89 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.88 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.87 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.85 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.84 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.83 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.81 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.81 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.8 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.78 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.78 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.76 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.74 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.74 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.73 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.72 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.71 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.71 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.69 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.68 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.68 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.68 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.67 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.66 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.64 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.63 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.63 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.63 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.62 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.61 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.6 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.57 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.54 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.5 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.49 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.43 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.41 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.34 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.29 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.28 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.25 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.25 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.19 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.14 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.13 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.11 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.09 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.96 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.89 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.87 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.76 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.68 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.58 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.52 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.52 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.51 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.49 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.48 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.46 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.32 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.27 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.25 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.21 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 97.21 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.18 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 97.15 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.05 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.9 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.88 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.56 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 96.46 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 96.37 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 96.35 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.33 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.1 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.08 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 96.03 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.86 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 95.51 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.2 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.16 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 95.03 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 94.97 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.19 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 93.69 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 93.28 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 93.27 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 92.71 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 92.3 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 92.19 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 92.18 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 92.17 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.61 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 89.19 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 88.67 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 87.91 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 87.76 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 87.74 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 86.89 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 86.2 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 86.1 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 85.36 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 84.43 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 83.33 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 82.12 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=352.73 Aligned_cols=503 Identities=10% Similarity=0.016 Sum_probs=404.6
Q ss_pred HcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 038622 32 KAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALS 111 (587)
Q Consensus 32 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 111 (587)
..|.+..+...+..+. .+++..|..++..+.+.|++++|+.+|+++... .|+...+..++.+|.+.|++++|+.
T Consensus 65 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 65 TDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHH
Confidence 3444555555554433 357788999999999999999999999999865 4466788889999999999999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC---------------CCCCCcccHHHHHHHHHhcCCH
Q 038622 112 FIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQE---------------GFDPDVFTYNSLISGLCKLGEV 176 (587)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~ 176 (587)
+|+++... +++..++..++.+|.+.|++++|+++|+++... +.+++..++..++.+|.+.|++
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 99988654 678889999999999999999999999853221 1223467899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHH---HHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHH
Q 038622 177 EEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATEL---ARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELF 253 (587)
Q Consensus 177 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 253 (587)
++|+++|+++...+ +.+...+..++..+...+..+.+... +..+...+..+...++..++..|.+.|++++|.++|
T Consensus 217 ~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 217 DRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 99999999998875 44666777776666554433322211 333333333334445566677888899999999999
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 038622 254 QEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISR 333 (587)
Q Consensus 254 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 333 (587)
+++.+. +++..++..++..+...|++++|+.+|+++...+ +.+..++..++.++...|++++|..+++++.... +.
T Consensus 296 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 371 (597)
T 2xpi_A 296 SSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PE 371 (597)
T ss_dssp HTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT
T ss_pred HHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cc
Confidence 998876 6789999999999999999999999999998876 5577889999999999999999999999998765 66
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHH
Q 038622 334 NSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIG 413 (587)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 413 (587)
+..++..++.+|.+.|++++|..+|+++.... +.+..++..++.++...|++++|..+|+++.+.++ .+..++..++.
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 449 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGM 449 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHH
Confidence 78899999999999999999999999998853 33677899999999999999999999999998644 37788999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC--HHHHHHHHHHHHh
Q 038622 414 GLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEK----ADPPD--ALTYKHVFRGLCN 487 (587)
Q Consensus 414 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~ 487 (587)
+|...|++++|.++|+++.+..+. +..+|..++..+.+.|++++|+++|+++++. +..|+ ...+..++..+..
T Consensus 450 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 528 (597)
T 2xpi_A 450 QHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK 528 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence 999999999999999999987544 6789999999999999999999999999885 44666 6789999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc-hhhhhh
Q 038622 488 GGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR-ETSMVR 552 (587)
Q Consensus 488 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~ 552 (587)
.|+ +++|++.++++++.+ +.++.++..++.+|.+.|++++|.+.++++++.+|.+.. +..++.
T Consensus 529 ~g~-~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 592 (597)
T 2xpi_A 529 LKM-YDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKR 592 (597)
T ss_dssp TTC-HHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hcC-HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 999 999999999999854 338999999999999999999999999999999998743 344433
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-42 Score=353.07 Aligned_cols=491 Identities=12% Similarity=0.030 Sum_probs=418.5
Q ss_pred CCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHH
Q 038622 17 KPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVL 96 (587)
Q Consensus 17 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 96 (587)
.++...|+.++..|.+.|++++|+.+|+++.+. .|+..++..++.++...|++++|+.+|+++... +.+..++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l 156 (597)
T 2xpi_A 81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLA 156 (597)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHH
Confidence 467889999999999999999999999999865 578889999999999999999999999998654 6788899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC---------------CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcc
Q 038622 97 VHGFCKEGRIEDALSFIQEMVSE---------------GFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVF 161 (587)
Q Consensus 97 ~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 161 (587)
+.+|.+.|++++|+.+|+++... +.+++..+|..++.+|.+.|++++|++.|+++.+.++ .+..
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~ 235 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYE 235 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHH
T ss_pred HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhH
Confidence 99999999999999999853221 1233578899999999999999999999999998632 2445
Q ss_pred cHHHHHHHHHhcCCHHHHHH--H-HHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 038622 162 TYNSLISGLCKLGEVEEAVE--I-LNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQ 238 (587)
Q Consensus 162 ~~~~l~~~~~~~g~~~~a~~--~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 238 (587)
.+..++..+...+..+.+.. + +..+...+.......+..++..|.+.|++++|.++++++.+. +++..++..++.
T Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 313 (597)
T 2xpi_A 236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKAD 313 (597)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHH
Confidence 55555555444433222211 1 444444333334445666788889999999999999998765 578999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 038622 239 GLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEE 318 (587)
Q Consensus 239 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 318 (587)
.+...|++++|.++|+++.+.+ +.+..++..++.++...|++++|..+++++.... +.+..++..++.+|.+.|++++
T Consensus 314 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 314 TLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHH
Confidence 9999999999999999999875 5578889999999999999999999999998765 6788899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038622 319 AEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTS 398 (587)
Q Consensus 319 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 398 (587)
|.++|+++.... +.+..+|..++.++.+.|++++|+.+|+++...+ +.+..++..++.+|...|++++|..+|+++.+
T Consensus 392 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 392 ARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998865 5678899999999999999999999999999863 34778999999999999999999999999998
Q ss_pred CCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC--hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038622 399 NGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMK----GIVLT--PQAYNPVIQALFRRKRTTEAMRLFREMMEKADP 472 (587)
Q Consensus 399 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 472 (587)
..+. +..++..++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.++...|++++|++.++++++.+ |
T Consensus 470 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p 547 (597)
T 2xpi_A 470 LFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-T 547 (597)
T ss_dssp HCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-S
T ss_pred hCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-C
Confidence 6443 6788999999999999999999999999876 44666 6799999999999999999999999999975 7
Q ss_pred CCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHc
Q 038622 473 PDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVS 523 (587)
Q Consensus 473 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 523 (587)
.+..++..++..+...|+ +++|.+.++++++. .| ++..+..++.+|..
T Consensus 548 ~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 548 NDANVHTAIALVYLHKKI-PGLAITHLHESLAI--SPNEIMASDLLKRALEE 596 (597)
T ss_dssp CCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHTTC-
T ss_pred CChHHHHHHHHHHHHhCC-HHHHHHHHHHHHhc--CCCChHHHHHHHHHHhc
Confidence 789999999999999999 99999999999984 56 78888888887753
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-32 Score=257.93 Aligned_cols=366 Identities=16% Similarity=0.081 Sum_probs=240.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh
Q 038622 167 ISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNF 246 (587)
Q Consensus 167 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 246 (587)
+..+.+.|++++|++.++++.... |.+...+..++..+...|++++|...++...+.. +.+..++..++.++...|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 445556666666666666665554 3345555666666666666666666666665542 33556666666666666666
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 038622 247 DVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEM 326 (587)
Q Consensus 247 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 326 (587)
++|...|+++.+.. |.+..++..++.++...|++++|+..|+++.+.+ |.+...+..++..+...|++++|...|+++
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 66666666666553 3345566666666667777777777776666654 444555666666666677777777777766
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc
Q 038622 327 EIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIV 406 (587)
Q Consensus 327 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 406 (587)
.... |.+...|..++.++...|++++|...|++++... +.+...+..++..+...|++++|...++++....+. +..
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~ 238 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHH
Confidence 6654 4455666667777777777777777777776643 224456666667777777777777777776664322 455
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038622 407 TYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLC 486 (587)
Q Consensus 407 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (587)
++..++.++...|++++|.+.++++.+.++. ++.++..++.++...|++++|+..|+++++.. |.+...+..++..+.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHH
Confidence 6666777777777777777777777765332 45667777777777777777777777777763 566667777777777
Q ss_pred hCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 487 NGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 487 ~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
..|+ +++|+..++++++. .| +..++..++.+|.+.|++++|+..++++++..|..
T Consensus 317 ~~g~-~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~ 372 (388)
T 1w3b_A 317 EQGN-IEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 372 (388)
T ss_dssp TTTC-HHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC
T ss_pred HcCC-HHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 7777 77777777777763 34 56677777777777777777777777777776654
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-31 Score=253.74 Aligned_cols=382 Identities=16% Similarity=0.083 Sum_probs=280.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCH
Q 038622 132 VNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQV 211 (587)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 211 (587)
+..+.+.|++++|++.++.+.+.. +.+...+..+...+...|++++|...++.+.... +.+..++..++.++...|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 344555666666666666655542 2234445555555666666666666666665554 44556666666666666666
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 038622 212 EEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEM 291 (587)
Q Consensus 212 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 291 (587)
++|+..|+++.... +.+...+..++.++...|++++|.+.|+++.+.. |.+...+..++..+...|++++|+..|+++
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 66666666666542 2245566667777777777777777777776653 334556667777777777777777777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh
Q 038622 292 ESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKF 371 (587)
Q Consensus 292 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 371 (587)
.... |.+..++..++.++...|++++|...|+++...+ |.+...+..++..+...|++++|...+++++... +.+..
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 238 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHH
Confidence 7664 4556777777788888888888888888877765 5566777788888888888888888888887753 22466
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 038622 372 TYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALF 451 (587)
Q Consensus 372 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 451 (587)
++..++.++...|++++|...++++++.++. +..++..++.++...|++++|.+.++++.+..+ .+...+..++..+.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHH
Confidence 7778888888888888888888888875433 466788888889999999999999999888643 36788889999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCC
Q 038622 452 RRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGK 526 (587)
Q Consensus 452 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 526 (587)
..|++++|+..++++++.. |.+...+..++..+...|+ +++|+..++++++ +.| .+.++..++.++...|+
T Consensus 317 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGK-LQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTC-CHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred HcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHHccC
Confidence 9999999999999998864 6677888889999999999 9999999999997 456 68888999998887764
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-28 Score=241.66 Aligned_cols=453 Identities=10% Similarity=0.009 Sum_probs=310.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 038622 55 ERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNG 134 (587)
Q Consensus 55 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 134 (587)
...+...+..+...|++++|+..|++++..+ |+...+..++.++...|++++|+..++++++.+ |.+..++..++.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 4556667777777777777777777777764 356667777777777777777777777777653 4455667777777
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHH
Q 038622 135 LCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEA 214 (587)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 214 (587)
+...|++++|...|+++...+. ++......++..+........+.+.+..+......++...... ..
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------~~------ 149 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQP------AK------ 149 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC--------------------------------
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCh------hh------
Confidence 7777777777777777776532 2333333333333332222222222222211111111100000 00
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHc---cCChHHHHHHHHHH
Q 038622 215 TELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCS---RGMLEEALKLLKEM 291 (587)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~ 291 (587)
... ......|+.......+ ......... .....+.+...+...+..+.. .|++++|+..++++
T Consensus 150 -~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 215 (514)
T 2gw1_A 150 -ERK---DKQENLPSVTSMASFF----GIFKPELTF------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKA 215 (514)
T ss_dssp -----------CCCCHHHHHHHH----TTSCCCCCC------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHH
T ss_pred -HHH---hhccCCchhHHHHHHH----hhcCHHHHH------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 000 0000112221111111 110000000 000112335566666666665 88999999999998
Q ss_pred HH-----CCC--------CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038622 292 ES-----SGC--------ARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLM 358 (587)
Q Consensus 292 ~~-----~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 358 (587)
.. ... +.+..++..++.++...|++++|...++++.... +. ...+..++.++...|++++|...+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-~~-~~~~~~l~~~~~~~~~~~~A~~~~ 293 (514)
T 2gw1_A 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF-PR-VNSYIYMALIMADRNDSTEYYNYF 293 (514)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC-CC-HHHHHHHHHHHHTSSCCTTGGGHH
T ss_pred HHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-cc-HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 87 311 2234567888899999999999999999998876 33 888888999999999999999999
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038622 359 DQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVL 438 (587)
Q Consensus 359 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 438 (587)
++++... +.+...+..++.++...|++++|...++++....+. +...+..++.++...|++++|...++++.+..+.
T Consensus 294 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~- 370 (514)
T 2gw1_A 294 DKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE- 370 (514)
T ss_dssp HHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-
T ss_pred HHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-
Confidence 9998853 336678888999999999999999999999986443 5778889999999999999999999999886433
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC------HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCCC
Q 038622 439 TPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPD------ALTYKHVFRGLCN---GGGPIGEAVDFVIEMLERGFLP 509 (587)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~---~~~~~~~A~~~~~~~~~~~~~p 509 (587)
+...+..++..+...|++++|...++++++.. +.+ ...+..++..+.. .|+ +++|...++++++. .|
T Consensus 371 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~A~~~~~~a~~~--~~ 446 (514)
T 2gw1_A 371 APEVPNFFAEILTDKNDFDKALKQYDLAIELE-NKLDGIYVGIAPLVGKATLLTRNPTVEN-FIEATNLLEKASKL--DP 446 (514)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTSSSCSSCSHHHHHHHHHHHTSCCTTH-HHHHHHHHHHHHHH--CT
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh-hccchHHHHHHHHHHHHHHHhhhhhcCC-HHHHHHHHHHHHHh--Cc
Confidence 56889999999999999999999999998852 222 2377788888888 898 99999999999985 45
Q ss_pred -CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc
Q 038622 510 -EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 510 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
+..++..++.+|...|++++|...++++++..|.+..
T Consensus 447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 484 (514)
T 2gw1_A 447 RSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEE 484 (514)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHH
Confidence 7889999999999999999999999999999997643
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-27 Score=236.74 Aligned_cols=447 Identities=11% Similarity=-0.021 Sum_probs=228.3
Q ss_pred HhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038622 20 VSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHG 99 (587)
Q Consensus 20 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 99 (587)
+..|..+...+.+.|++++|+..|+++.+.+ |++.++..++.++...|++++|+..++++++.+ |.+..++..++.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 4578888999999999999999999999875 689999999999999999999999999999986 6678899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHH
Q 038622 100 FCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEA 179 (587)
Q Consensus 100 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 179 (587)
+...|++++|...|+++...+ +++......++..+........+.+.+..+...+..|+....................
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 999999999999999999875 4454554555544444333333333333222221111111100000000000000000
Q ss_pred HHHHHHHHhCCC---------CCChhhHHHHHHHHhc---cCCHHHHHHHHHHHHh-----CCCCCCHhhHHHHHHHHHh
Q 038622 180 VEILNQMILRDC---------SPNTITYNTLISTLCK---ENQVEEATELARVLTS-----KGILPDVCTFNSLIQGLCL 242 (587)
Q Consensus 180 ~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~ 242 (587)
..+...+..... +.+...+...+..+.. .|++++|...++++.. ....|+....
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~--------- 232 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKL--------- 232 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHH---------
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcccccc---------
Confidence 000000000000 1112333333333332 4555555555555444 1000000000
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 038622 243 TSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEI 322 (587)
Q Consensus 243 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 322 (587)
.+.+..++..++..+...|++++|+..++++.... +. ...+..++.++...|++++|...
T Consensus 233 ------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-~~-~~~~~~l~~~~~~~~~~~~A~~~ 292 (514)
T 2gw1_A 233 ------------------KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF-PR-VNSYIYMALIMADRNDSTEYYNY 292 (514)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC-CC-HHHHHHHHHHHHTSSCCTTGGGH
T ss_pred ------------------ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-cc-HHHHHHHHHHHHHCCCHHHHHHH
Confidence 01112334444444444455555555554444433 11 44444444444455555555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 038622 323 FDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCE 402 (587)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 402 (587)
++++.... +.+...+..++.++...|++++|...+++++... +.+...+..++.++...|++++|...++++.+..+.
T Consensus 293 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 370 (514)
T 2gw1_A 293 FDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE 370 (514)
T ss_dssp HHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 54444432 3334444444455555555555555555554432 113334444445555555555555555554443211
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-C----hHhHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCC
Q 038622 403 PDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVL-T----PQAYNPVIQALFR---RKRTTEAMRLFREMMEKADPPD 474 (587)
Q Consensus 403 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~ 474 (587)
+...+..++.++...|++++|...++++....+.. . ...+..++.++.. .|++++|...++++++.. +.+
T Consensus 371 -~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~ 448 (514)
T 2gw1_A 371 -APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRS 448 (514)
T ss_dssp -CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTC
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-ccc
Confidence 33444455555555555555555555554431110 0 1245555555555 555555555555555542 334
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 038622 475 ALTYKHVFRGLCNGGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 475 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 504 (587)
...+..++..+...|+ +++|...++++++
T Consensus 449 ~~~~~~la~~~~~~g~-~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 449 EQAKIGLAQMKLQQED-IDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC-HHHHHHHHHHHHH
Confidence 4444555555555555 5555555555555
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-26 Score=229.58 Aligned_cols=441 Identities=12% Similarity=0.066 Sum_probs=214.1
Q ss_pred hhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038622 21 STFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGF 100 (587)
Q Consensus 21 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (587)
..|..+...+.+.|++++|+..|+.+.+.. |.++.++..++.++...|++++|+..++++++.+ |.+...+..++.++
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 455566666666666666666666666654 5566666666666666666666666666666654 44556666666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCcccHHHHHHHHHhcCCHHH
Q 038622 101 CKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGF--DPDVFTYNSLISGLCKLGEVEE 178 (587)
Q Consensus 101 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 178 (587)
...|++++|+..|+ .... .|+. ....+..+...+...+|...++.+....+ .+........+..+....+.+.
T Consensus 104 ~~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 66666666666664 3322 1221 11122233334444566666666654310 0011111223333444444444
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038622 179 AVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKT 258 (587)
Q Consensus 179 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 258 (587)
+...+....... +........+...+...+ .......+++++|..+|+++.+
T Consensus 179 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~---------------------------~~~~~a~~~~~~A~~~~~~~l~ 230 (537)
T 3fp2_A 179 EVSSVNTSSNYD-TAYALLSDALQRLYSATD---------------------------EGYLVANDLLTKSTDMYHSLLS 230 (537)
T ss_dssp HHHTSCCCCSSC-SSHHHHHHHHHHHHTCSH---------------------------HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhccccc-cHHHHHHHHHHHHHHhhh---------------------------hhhHHHHHHHHHHHHHHHHHHH
Confidence 433332221111 000111112222211110 0000111244445555554444
Q ss_pred cCCCCCH-------HhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 038622 259 KGCQPDE-------FTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGI 331 (587)
Q Consensus 259 ~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 331 (587)
.. +.+. .++..++..+...|++++|+..++++.... |+...+..++.++...|++++|...++++....
T Consensus 231 ~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 306 (537)
T 3fp2_A 231 AN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN- 306 (537)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-
T ss_pred HC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-
Confidence 32 1111 123444445555555555555555555543 224455555555555555555555555555443
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHH
Q 038622 332 SRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTL 411 (587)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 411 (587)
|.+..++..++..+...|++++|...+++++... +.+...+..++.++...|++++|...++++.+..+. +...+..+
T Consensus 307 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l 384 (537)
T 3fp2_A 307 PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFF 384 (537)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHH
Confidence 3344555555555555555555555555555532 123344555555555555555555555555554222 34455555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCC-----CChHhHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCCHH
Q 038622 412 IGGLCKAGRVEVASKLLRSIQMKGIV-----LTPQAYNPVIQALFRR----------KRTTEAMRLFREMMEKADPPDAL 476 (587)
Q Consensus 412 ~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~ 476 (587)
+.++...|++++|...++++.+..+. .....+...+.++... |++++|+..|+++++.. |.+..
T Consensus 385 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~ 463 (537)
T 3fp2_A 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQ 463 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHH
Confidence 55555566666666655555443111 1112234444555555 66666666666666553 44555
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 038622 477 TYKHVFRGLCNGGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 504 (587)
.+..++..+...|+ +++|.+.++++++
T Consensus 464 ~~~~l~~~~~~~g~-~~~A~~~~~~al~ 490 (537)
T 3fp2_A 464 AKIGLAQLKLQMEK-IDEAIELFEDSAI 490 (537)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-HHHHHHHHHHHHH
Confidence 55566666666666 6666666666665
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.8e-26 Score=227.62 Aligned_cols=448 Identities=13% Similarity=0.092 Sum_probs=315.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 038622 55 ERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNG 134 (587)
Q Consensus 55 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 134 (587)
...+..++..+.+.|++++|+..|++++..+ |.+...+..++.++...|++++|+..++++++.+ |.+..++..++.+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4567778888888888888888888888875 5677888888888888888888888888888764 5567778888888
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHhccCCHH
Q 038622 135 LCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDC--SPNTITYNTLISTLCKENQVE 212 (587)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 212 (587)
+...|++++|+..|+ .... .|+.. ...+..+...+....|...++.+..... .+........+..+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHH-HHhc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 888888888888886 3332 22211 1123334444555667777777654310 000001112222233333333
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHH
Q 038622 213 EATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEME 292 (587)
Q Consensus 213 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 292 (587)
.+...+...... .+. +..+... +..+... +. .......|++++|+..++++.
T Consensus 178 ~~~~~~~~~~~~--~~~---~~~~~~~-------------l~~~~~~----~~------~~~~~a~~~~~~A~~~~~~~l 229 (537)
T 3fp2_A 178 LEVSSVNTSSNY--DTA---YALLSDA-------------LQRLYSA----TD------EGYLVANDLLTKSTDMYHSLL 229 (537)
T ss_dssp HHHHTSCCCCSS--CSS---HHHHHHH-------------HHHHHTC----SH------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccc--ccH---HHHHHHH-------------HHHHHHh----hh------hhhHHHHHHHHHHHHHHHHHH
Confidence 333222111110 000 0000000 0000000 00 011122357899999999998
Q ss_pred HCCCCCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 038622 293 SSGCARNV-------VTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEG 365 (587)
Q Consensus 293 ~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 365 (587)
+.. |.+. .++..++..+...|++++|...++++.... |+...+..++..+...|++++|...+++++...
T Consensus 230 ~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 306 (537)
T 3fp2_A 230 SAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN 306 (537)
T ss_dssp C---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC
T ss_pred HHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC
Confidence 865 3333 346777888899999999999999998875 448889999999999999999999999999864
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHH
Q 038622 366 LKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNP 445 (587)
Q Consensus 366 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 445 (587)
+.+..++..++.++...|++++|...++++.+..+. +...+..++.++...|++++|..+++++.+..+. +...+..
T Consensus 307 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~ 383 (537)
T 3fp2_A 307 -PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTF 383 (537)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHH
T ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHH
Confidence 346778999999999999999999999999986443 5678999999999999999999999999987543 5778999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCC-----CCCHHHHHHHHHHHHhC----------CCCHHHHHHHHHHHHHcCCCC-
Q 038622 446 VIQALFRRKRTTEAMRLFREMMEKAD-----PPDALTYKHVFRGLCNG----------GGPIGEAVDFVIEMLERGFLP- 509 (587)
Q Consensus 446 l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~----------~~~~~~A~~~~~~~~~~~~~p- 509 (587)
++.++...|++++|+..|+++++... ......+...+..+... |+ +++|+..++++++. .|
T Consensus 384 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~A~~~~~~a~~~--~p~ 460 (537)
T 3fp2_A 384 FAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEK-FNAAIKLLTKACEL--DPR 460 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHH-HHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhH-HHHHHHHHHHHHHh--CCC
Confidence 99999999999999999999987421 11222344556667777 88 99999999999985 45
Q ss_pred CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc
Q 038622 510 EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 510 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
+..++..++.+|...|++++|+..++++++..|..+.
T Consensus 461 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 497 (537)
T 3fp2_A 461 SEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDE 497 (537)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 7899999999999999999999999999999998754
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.4e-26 Score=221.29 Aligned_cols=352 Identities=13% Similarity=0.057 Sum_probs=231.4
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 038622 159 DVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQ 238 (587)
Q Consensus 159 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 238 (587)
+...+..++..+...|++++|+.+|+++.... +.+..++..++.++...|++++|+..++++.+.+ +.+...+..++.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 34455555566666666666666666655543 3345555556666666666666666666555542 224455555555
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCH---HhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 038622 239 GLCLTSNFDVAMELFQEMKTKGCQPDE---FTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKR 315 (587)
Q Consensus 239 ~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 315 (587)
++...|++++|...|+++.+.. +.+. ..+..++..+.. ..+..++..+...|+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSGD 158 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcCC
Confidence 5555566666666665555442 2222 333333222100 011223445666777
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 038622 316 IEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQN 395 (587)
Q Consensus 316 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 395 (587)
+++|+..|+++.... |.+...+..++.++...|++++|...++++.... +.+..++..++.++...|++++|...+++
T Consensus 159 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777777776654 4566667777777777777777777777776642 23566677777777777777777777777
Q ss_pred HHHCCCCCCcchHHH------------HHHHHHhcCChHHHHHHHHHHHHcCCCCC----hHhHHHHHHHHHhcCCHHHH
Q 038622 396 MTSNGCEPDIVTYGT------------LIGGLCKAGRVEVASKLLRSIQMKGIVLT----PQAYNPVIQALFRRKRTTEA 459 (587)
Q Consensus 396 ~~~~~~~~~~~~~~~------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A 459 (587)
+....+. +...+.. ++..+...|++++|..+++++.+..+. + ...+..++.++...|++++|
T Consensus 237 ~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A 314 (450)
T 2y4t_A 237 CLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEA 314 (450)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHH
Confidence 7664222 2233333 378888999999999999999885332 2 34678889999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH------------HHHHccC-
Q 038622 460 MRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLA------------EGLVSLG- 525 (587)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~------------~~~~~~g- 525 (587)
+..++++++.. |.+...+..++.++...|+ +++|...++++++ +.| ++.++..++ ..|...|
T Consensus 315 ~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~ 390 (450)
T 2y4t_A 315 IRVCSEVLQME-PDNVNALKDRAEAYLIEEM-YDEAIQDYETAQE--HNENDQQIREGLEKAQRLLKQSQKRDYYKILGV 390 (450)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCS
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHhcC-HHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHhhcccchhHHHHhCC
Confidence 99999998864 6678888899999999999 9999999999998 456 677888777 3455556
Q ss_pred ----CHhHHHHHHHH-HHhcCCCC
Q 038622 526 ----KEETLVELIDM-VMDKAKFS 544 (587)
Q Consensus 526 ----~~~~A~~~~~~-~~~~~~~~ 544 (587)
+.+++.+.+++ +++..|++
T Consensus 391 ~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 391 KRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp STTCCTTHHHHHHHHHHHHSCGGG
T ss_pred CccCCHHHHHHHHHHHHHHhCCCC
Confidence 67788999987 77777765
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-25 Score=218.78 Aligned_cols=314 Identities=13% Similarity=0.083 Sum_probs=193.1
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 038622 7 AHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGC 86 (587)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 86 (587)
.+.+++... |.+...|..++..+.+.|++++|+..|+.+.+.. +.++.++..++.++...|++++|+..++++.+.+
T Consensus 14 ~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 90 (450)
T 2y4t_A 14 GTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK- 90 (450)
T ss_dssp ----------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred ccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-
Confidence 344444443 5667778888888888888888888888887664 5677788888888888888888888888888775
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh---hhHHHH------------HHHHHhcCChHHHHHHHHHH
Q 038622 87 LVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQ---FTYNTL------------VNGLCKVGHVKQALEVMDMM 151 (587)
Q Consensus 87 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~ 151 (587)
|.+..++..++.+|...|++++|...|+++.+.+ +.+. ..+..+ +..+...|++++|+..|+.+
T Consensus 91 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 169 (450)
T 2y4t_A 91 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI 169 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5567777788888888888888888888887753 3233 444444 33366666777777777666
Q ss_pred HhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHh
Q 038622 152 LQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVC 231 (587)
Q Consensus 152 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 231 (587)
.+.. +.+..++..++.++...|++++|+.+|+++...+ +.+..++..++.++...|++++|+..++++.... +.+..
T Consensus 170 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~ 246 (450)
T 2y4t_A 170 LEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKR 246 (450)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHH
Confidence 6542 2245566666666666677777776666666553 3455666666666666666666666666666542 11233
Q ss_pred hHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCC----HHhHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 038622 232 TFNSL------------IQGLCLTSNFDVAMELFQEMKTKGCQPD----EFTYNMLIDSLCSRGMLEEALKLLKEMESSG 295 (587)
Q Consensus 232 ~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 295 (587)
.+..+ +..+...|++++|...|+++.+.. +.+ ...+..++.++...|++++|+..++++....
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 325 (450)
T 2y4t_A 247 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME 325 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 33322 455555566666666665555542 112 2244555555555555555555555555443
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 038622 296 CARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQ 329 (587)
Q Consensus 296 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 329 (587)
+.+..++..++.++...|++++|...++++.+.
T Consensus 326 -p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 326 -PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred -cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 334555555555555555555555555555544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-23 Score=196.30 Aligned_cols=329 Identities=11% Similarity=0.057 Sum_probs=219.3
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 038622 195 TITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDS 274 (587)
Q Consensus 195 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 274 (587)
+..+..++..+...|++++|+..++++.+.. +.+...+..++.++...|++++|...++++.+.. +.+...+..++.+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 3445556666666666666666666665542 2245555566666666666666666666665543 3345555666666
Q ss_pred HHccCChHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 038622 275 LCSRGMLEEALKLLKEMESSGCA---RNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRV 351 (587)
Q Consensus 275 ~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 351 (587)
+...|++++|+..++++.+.. + .+...+..+..... ...+..++..+...|++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 666666666666666665543 2 12222222211100 01122235667777888
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 038622 352 EDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSI 431 (587)
Q Consensus 352 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 431 (587)
++|...++++.... +.+...+..++.++...|++++|...++++....+. +...+..++.++...|++++|...++++
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888877753 335667777777888888888888888887775332 5667777888888888888888888888
Q ss_pred HHcCCCCChHhHH------------HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHhCCCCHHHH
Q 038622 432 QMKGIVLTPQAYN------------PVIQALFRRKRTTEAMRLFREMMEKADPPDAL----TYKHVFRGLCNGGGPIGEA 495 (587)
Q Consensus 432 ~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~A 495 (587)
.+..+. +...+. .++..+...|++++|+..++++++.. +.+.. .+..++..+...|+ +++|
T Consensus 215 ~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~-~~~A 291 (359)
T 3ieg_A 215 LKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEK-PVEA 291 (359)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTC-HHHH
T ss_pred HhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccC-HHHH
Confidence 775332 333332 34777889999999999999999864 44443 24457778889999 9999
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc-hhhhhhhHHH
Q 038622 496 VDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR-ETSMVRGFLK 556 (587)
Q Consensus 496 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~ 556 (587)
+..++++++. .| ++.++..++.++...|++++|...++++++..|.+.. +..+..++..
T Consensus 292 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 292 IRICSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 9999999985 45 7899999999999999999999999999999998643 4444444333
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=9.2e-26 Score=217.79 Aligned_cols=202 Identities=14% Similarity=0.178 Sum_probs=103.8
Q ss_pred HHHHHHHHhCCCCCCH-hhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCC---------hhHH
Q 038622 5 ETAHADMVSRGIKPDV-STFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGN---------LDGA 74 (587)
Q Consensus 5 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~~~A 74 (587)
+.+...+.+.++.+.+ ..++.+|+.|++.|++++|.++|++|.+.|++||..+|+.++.+|.+.+. ++.|
T Consensus 10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A 89 (501)
T 4g26_A 10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRG 89 (501)
T ss_dssp --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHH
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHH
Confidence 3445555555544433 34566666777777777777777777666666777777777666665443 3445
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 038622 75 LRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQE 154 (587)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (587)
.++|++|...|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.
T Consensus 90 ~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 90 FDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHh
Q 038622 155 GFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLC 206 (587)
Q Consensus 155 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 206 (587)
|+.||..+|+.++.+|++.|++++|.++|++|.+.+..|+..++..+...+.
T Consensus 170 G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 170 EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 5555555555555555555555555555555555554555555554444443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-25 Score=214.61 Aligned_cols=202 Identities=16% Similarity=0.245 Sum_probs=127.1
Q ss_pred HHHHHHHHcCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC---------hHHHH
Q 038622 76 RIREQMVEHGCLVTN-VTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGH---------VKQAL 145 (587)
Q Consensus 76 ~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~ 145 (587)
.+.+.+.+.+...++ ..++.++.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.+. +++|.
T Consensus 11 ~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~ 90 (501)
T 4g26_A 11 NLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGF 90 (501)
T ss_dssp -------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHH
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHH
Confidence 334444444433333 24556666777777777777777777777777777777777776665443 45666
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 038622 146 EVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKG 225 (587)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 225 (587)
++|++|...|+.||..+|+.++.+|++.|++++|.++|++|...|+.|+..+|+.++.+|++.|++++|.+++++|.+.|
T Consensus 91 ~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G 170 (501)
T 4g26_A 91 DIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESE 170 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHc
Q 038622 226 ILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCS 277 (587)
Q Consensus 226 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 277 (587)
+.||..+|+.++.+|.+.|++++|.+++++|.+.+..|+..||..+...+..
T Consensus 171 ~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 171 VVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 6666666666666666666666666666666666666666666666665543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-21 Score=192.50 Aligned_cols=354 Identities=13% Similarity=0.032 Sum_probs=219.2
Q ss_pred CcccHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCH
Q 038622 159 DVFTYNSLISGLCK----LGEVEEAVEILNQMILRDCSPNTITYNTLISTLCK----ENQVEEATELARVLTSKGILPDV 230 (587)
Q Consensus 159 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 230 (587)
++.....+...|.. .+++++|+.+|++....+ ++.++..|+..|.. .+++++|..+|++..+.+ ++
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 34444445555544 555555555555555543 44455555555555 555666666665555543 44
Q ss_pred hhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHc----cCChHHHHHHHHHHHHCCCCCCHHH
Q 038622 231 CTFNSLIQGLCL----TSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCS----RGMLEEALKLLKEMESSGCARNVVT 302 (587)
Q Consensus 231 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 302 (587)
..+..+...|.. .+++++|..+|++..+.+ ++..+..++..|.. .+++++|+++|+++.+.+ +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 445555555555 556666666666665543 44555556655554 556666666666666543 4555
Q ss_pred HHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHhhHH
Q 038622 303 YNTLIDGFCK----LKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCK----SRRVEDAAQLMDQMIMEGLKPDKFTYN 374 (587)
Q Consensus 303 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~ 374 (587)
+..++..|.. .+++++|...|++....+ ++..+..+...|.. .+++++|..+|+++.+.+ +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 6666666665 566666666666666543 44455556666654 566777777777766542 344555
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCChHhHHH
Q 038622 375 SLLTYYCR----AGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKA-----GRVEVASKLLRSIQMKGIVLTPQAYNP 445 (587)
Q Consensus 375 ~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ 445 (587)
.+...+.. .+++++|...|++..+.+ +...+..++..|... +++++|..+++++.+.+ +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 56666665 667777777777766542 345566666666665 67777777777777642 4456667
Q ss_pred HHHHHHhcC---CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038622 446 VIQALFRRK---RTTEAMRLFREMMEKADPPDALTYKHVFRGLCN----GGGPIGEAVDFVIEMLERGFLPEFSSFYMLA 518 (587)
Q Consensus 446 l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 518 (587)
++..+...| ++++|+++|+++.+.+ +...+..++..+.. .++ +++|+.+++++.+.+ ++.++..|+
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~-~~~A~~~~~~A~~~~---~~~a~~~Lg 406 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKD-EQQAAIWMRKAAEQG---LSAAQVQLG 406 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 777776655 6777777777777643 45566666666666 556 777777777777643 566777777
Q ss_pred HHHHc----cCCHhHHHHHHHHHHhcCCC
Q 038622 519 EGLVS----LGKEETLVELIDMVMDKAKF 543 (587)
Q Consensus 519 ~~~~~----~g~~~~A~~~~~~~~~~~~~ 543 (587)
.+|.. .+++++|..+++++.+.+|.
T Consensus 407 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 407 EIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 77776 67777777777777777743
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-21 Score=192.83 Aligned_cols=386 Identities=13% Similarity=0.058 Sum_probs=247.8
Q ss_pred ChhhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCh
Q 038622 124 DQFTYNTLVNGLCK----VGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCK----LGEVEEAVEILNQMILRDCSPNT 195 (587)
Q Consensus 124 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~ 195 (587)
+...+..+...|.. .+++++|...|++..+.| ++..+..+...|.. .+++++|..+|++....+ ++
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44445555555554 555555665555555532 34455555555555 556666666666655543 44
Q ss_pred hhHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHh
Q 038622 196 ITYNTLISTLCK----ENQVEEATELARVLTSKGILPDVCTFNSLIQGLCL----TSNFDVAMELFQEMKTKGCQPDEFT 267 (587)
Q Consensus 196 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 267 (587)
.++..|+..|.. .+++++|+.+|++..+.+ ++..+..+...|.. .+++++|.+.|++..+.+ +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 555555555555 556666666666665543 44555555555554 566777777777666653 4566
Q ss_pred HHHHHHHHHc----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 038622 268 YNMLIDSLCS----RGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCK----LKRIEEAEEIFDEMEIQGISRNSVTYN 339 (587)
Q Consensus 268 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 339 (587)
+..++..|.. .++.++|+.+|++..+.+ +......++..|.. .+++++|...|++....+ +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 6666666665 667777777777776643 44556666666664 667777777777776543 445566
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCcchHHH
Q 038622 340 TLIDGLCK----SRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRA-----GDIKRAADIVQNMTSNGCEPDIVTYGT 410 (587)
Q Consensus 340 ~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~ 410 (587)
.+...+.. .+++++|+..|+++.+.+ +...+..+...+... +++++|...+++..+.+ +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 66666666 677888888888777643 455666677777766 78888888888887753 4456777
Q ss_pred HHHHHHhcC---ChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038622 411 LIGGLCKAG---RVEVASKLLRSIQMKGIVLTPQAYNPVIQALFR----RKRTTEAMRLFREMMEKADPPDALTYKHVFR 483 (587)
Q Consensus 411 l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 483 (587)
++.+|...| ++++|.++|++..+. .++..+..++..|.. .+++++|+..|+++.+.+ +...+..++.
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~ 407 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 777777655 778888888888875 266788888888887 788888888888888754 4566667777
Q ss_pred HHHh----CCCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCC
Q 038622 484 GLCN----GGGPIGEAVDFVIEMLERGFL-P-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAK 542 (587)
Q Consensus 484 ~~~~----~~~~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 542 (587)
.+.. .++ +++|...|+++++.+.. | ++.+...++.++.. +.+.|.+..++..+..|
T Consensus 408 ~y~~g~g~~~d-~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~~~~~~ 469 (490)
T 2xm6_A 408 IYYYGLGVERD-YVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK--QLQQAELLSQQYIEKYA 469 (490)
T ss_dssp HHHHTSSSCCC-HHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH--HHHHHHHHHHHHHHHHC
T ss_pred HHHcCCCCCCC-HHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh--HHHHHHHHHHHHHHHHH
Confidence 7776 666 88888888888875422 2 45555666665543 23444444444444433
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-22 Score=189.92 Aligned_cols=332 Identities=12% Similarity=0.043 Sum_probs=234.2
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 038622 159 DVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQ 238 (587)
Q Consensus 159 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 238 (587)
++..+..++..+...|++++|+..|+++...+ +.+..++..++.++...|++++|...++++.+.. +.+...+..++.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45567888999999999999999999999876 5578899999999999999999999999998863 336788999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCC---CCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 038622 239 GLCLTSNFDVAMELFQEMKTKGCQ---PDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKR 315 (587)
Q Consensus 239 ~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 315 (587)
++...|++++|...|+++.+.. + .+...+..+..... ...+..++..+...|+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTC
T ss_pred HHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccC
Confidence 9999999999999999999874 3 34455544432110 0112233444555555
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 038622 316 IEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQN 395 (587)
Q Consensus 316 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 395 (587)
+++|...++++.... |.+...+..++.++...|++++|...+++++... +.+...+..++.++...|++++|...+++
T Consensus 136 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 136 YTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555555555555443 3445555555555555566666666665555532 22444555555555556666666666655
Q ss_pred HHHCCCCCCcch------------HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----HhHHHHHHHHHhcCCHHHH
Q 038622 396 MTSNGCEPDIVT------------YGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTP----QAYNPVIQALFRRKRTTEA 459 (587)
Q Consensus 396 ~~~~~~~~~~~~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A 459 (587)
+.+..+. +... ...++..+...|++++|...++++.+..+. +. ..+..++.++...|++++|
T Consensus 214 a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 214 CLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHH
Confidence 5553211 1111 223466788889999999999988886433 33 2355678888999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcc
Q 038622 460 MRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSL 524 (587)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 524 (587)
+..++++++.. |.+...+..++..+...|+ +++|...++++++ +.| +..++..+..+....
T Consensus 292 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 292 IRICSEVLQME-PDNVNALKDRAEAYLIEEM-YDEAIQDYEAAQE--HNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHh--cCCCChHHHHHHHHHHHHH
Confidence 99999998874 6678888888888999998 9999999999998 456 577777777665543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.3e-22 Score=183.94 Aligned_cols=283 Identities=15% Similarity=0.049 Sum_probs=123.9
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038622 230 VCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDG 309 (587)
Q Consensus 230 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 309 (587)
...+..++..+...|++++|.++|+++.+.. +.+...+..++.++...|++++|...++++.+.. +.+...+..++..
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 99 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCY 99 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHH
Confidence 3334444444444444444444444444432 2233334444444444444444444444444432 2333444444444
Q ss_pred HHccC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHH
Q 038622 310 FCKLK-RIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKR 388 (587)
Q Consensus 310 ~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 388 (587)
+...| ++++|...++++.... |.+...+..++..+...|++++|...++++.... +.+...+..++..+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHH
Confidence 44444 4444444444444332 2233444444444444444444444444444431 1122333334444444444444
Q ss_pred HHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCC--------CCChHhHHHHHHHHHhcCCHHHHH
Q 038622 389 AADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGI--------VLTPQAYNPVIQALFRRKRTTEAM 460 (587)
Q Consensus 389 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~ 460 (587)
|...++++.+..+. +...+..++.++...|++++|...++++.+... +.....+..++.++...|++++|+
T Consensus 178 A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 44444444443211 233444444444444444444444444443210 112234444444444455555555
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 038622 461 RLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGL 521 (587)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 521 (587)
..++++++.. +.+...+..++..+...|+ +++|...++++++ +.| ++.++..++.++
T Consensus 257 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~--~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 257 DYHRQALVLI-PQNASTYSAIGYIHSLMGN-FENAVDYFHTALG--LRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHS-TTCSHHHHHHHHHHHHHTC-HHHHHHHHHTTTT--TCSCCHHHHHHHHHHH
T ss_pred HHHHHHHhhC-ccchHHHHHHHHHHHHhcc-HHHHHHHHHHHHc--cCCCchHHHHHHHHHH
Confidence 5555444432 3333444444444444444 4555555554444 223 344444444444
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.91 E-value=6e-21 Score=189.43 Aligned_cols=428 Identities=11% Similarity=0.055 Sum_probs=287.7
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038622 113 IQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCS 192 (587)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 192 (587)
+++.++.+ |-+...|..++.. .+.|++++|..+|+++++. .+.+...|..++..+.+.|+++.|..+|++++...
T Consensus 2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 45555553 5577888888884 7789999999999999886 34456788888888999999999999999998774
Q ss_pred CChhhHHHHHHHH-hccCCHHHHHH----HHHHHHhC-CCCC-CHhhHHHHHHHHHh---------cCChHHHHHHHHHH
Q 038622 193 PNTITYNTLISTL-CKENQVEEATE----LARVLTSK-GILP-DVCTFNSLIQGLCL---------TSNFDVAMELFQEM 256 (587)
Q Consensus 193 ~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~ 256 (587)
|+...|..++... ...|+.+.|.+ +|+..... |..| +...|...+..... .|+++.|..+|+++
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 4777777776533 34566666654 66665542 3333 45566666665543 57788888888888
Q ss_pred HHcCCCCC--HHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH------H
Q 038622 257 KTKGCQPD--EFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEME------I 328 (587)
Q Consensus 257 ~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------~ 328 (587)
++. |.+ ...|..........|. ..+..++ ....+++..|..++.... .
T Consensus 157 l~~--P~~~~~~~~~~~~~~e~~~~~-~~~~~~l---------------------~~~~~~~~~A~~~~~~~~~~~~~l~ 212 (530)
T 2ooe_A 157 CVN--PMINIEQLWRDYNKYEEGINI-HLAKKMI---------------------EDRSRDYMNARRVAKEYETVMKGLD 212 (530)
T ss_dssp TTS--CCTTHHHHHHHHHHHHHHHCH-HHHHHHH---------------------HTTHHHHHHHHHHHHHHHHHHHHCC
T ss_pred Hhc--hhhhHHHHHHHHHHHHHhhch-hHHHHHH---------------------HHhhHHHHHHHHHHHHHHHHHHHhc
Confidence 763 222 2233222221111110 0000000 012234555555554421 1
Q ss_pred cC---CCCC--------HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh-------
Q 038622 329 QG---ISRN--------SVTYNTLIDGLCKS----RRV----EDAAQLMDQMIMEGLKPDKFTYNSLLTYYCR------- 382 (587)
Q Consensus 329 ~~---~~~~--------~~~~~~l~~~~~~~----~~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~------- 382 (587)
.. ++|+ ...|...+...... ++. +.+..+|++++... +.+...|..++..+..
T Consensus 213 ~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~ 291 (530)
T 2ooe_A 213 RNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAE 291 (530)
T ss_dssp SSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhh
Confidence 11 2332 13444444332221 222 46778888888752 3466778777777765
Q ss_pred cCCHH-------HHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-h-HhHHHHHHHHHhc
Q 038622 383 AGDIK-------RAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLT-P-QAYNPVIQALFRR 453 (587)
Q Consensus 383 ~~~~~-------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~ 453 (587)
.|+++ +|..+++++++.-.+.+...+..++..+...|++++|..+|+++++. .|+ . ..|..++..+.+.
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~ 369 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRA 369 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHh
Confidence 68876 88999999886212225777888888888999999999999999885 333 2 5788888888889
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHH
Q 038622 454 KRTTEAMRLFREMMEKADPPDALTYKHVFRG-LCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLV 531 (587)
Q Consensus 454 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 531 (587)
|++++|..+|+++++.. +.+...+...+.. +...|+ .++|..+|+++++. .| ++.++..++..+.+.|+.++|+
T Consensus 370 ~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~-~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar 445 (530)
T 2ooe_A 370 EGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKD-KSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTR 445 (530)
T ss_dssp HHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCC-HHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHH
T ss_pred cCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHH
Confidence 99999999999999863 3333444333333 235777 99999999999984 35 6888999999999999999999
Q ss_pred HHHHHHHhcCCCCC-----chhhhhhhHHHHHHHHHHHHhcchhhhccCc
Q 038622 532 ELIDMVMDKAKFSD-----RETSMVRGFLKIRKFQDALATFGDILDSRMP 576 (587)
Q Consensus 532 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 576 (587)
.++++++...|.++ .|..++......|+.+++...++++.+..+.
T Consensus 446 ~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 446 VLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 99999998866442 4666677777889999999999998888763
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-20 Score=185.26 Aligned_cols=433 Identities=12% Similarity=0.076 Sum_probs=247.0
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 038622 8 HADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCL 87 (587)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 87 (587)
+++.++.+ |-|...|..++.. .+.|++++|..+|+++.+.. |.+...|..++..+.+.|++++|..+|++++...
T Consensus 2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 45555554 5577788888874 67788888888888887764 6677788888888888888888888888888764
Q ss_pred CChhhHHHHHHHH-HhcCCHHHHHH----HHHHHHHC-CCC-CChhhHHHHHHHHHh---------cCChHHHHHHHHHH
Q 038622 88 VTNVTVNVLVHGF-CKEGRIEDALS----FIQEMVSE-GFN-PDQFTYNTLVNGLCK---------VGHVKQALEVMDMM 151 (587)
Q Consensus 88 ~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~-~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~ 151 (587)
|+...|..++... ...|+++.|.+ +|++++.. |.. ++...|...+....+ .|+++.|..+|+++
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 2566666666433 34566666554 66665542 322 234566666655543 45566666666666
Q ss_pred HhCCCCCCc---ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC
Q 038622 152 LQEGFDPDV---FTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILP 228 (587)
Q Consensus 152 ~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 228 (587)
++. |.. ..|..........|. ..+..+ +. ...+++..|..++..+...
T Consensus 157 l~~---P~~~~~~~~~~~~~~e~~~~~-~~~~~~-------------------l~--~~~~~~~~A~~~~~~~~~~---- 207 (530)
T 2ooe_A 157 CVN---PMINIEQLWRDYNKYEEGINI-HLAKKM-------------------IE--DRSRDYMNARRVAKEYETV---- 207 (530)
T ss_dssp TTS---CCTTHHHHHHHHHHHHHHHCH-HHHHHH-------------------HH--TTHHHHHHHHHHHHHHHHH----
T ss_pred Hhc---hhhhHHHHHHHHHHHHHhhch-hHHHHH-------------------HH--HhhHHHHHHHHHHHHHHHH----
Confidence 552 211 111111110000000 000000 00 0122333444333331100
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCC--------HHhHHHHHHHHHc----cCCh----HHHHHHHH
Q 038622 229 DVCTFNSLIQGLCLTSNFDVAMELFQEMKTK---GCQPD--------EFTYNMLIDSLCS----RGML----EEALKLLK 289 (587)
Q Consensus 229 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~--------~~~~~~l~~~~~~----~~~~----~~a~~~~~ 289 (587)
....+. .++|+ ...|...+..... .++. +.+...|+
T Consensus 208 -------------------------~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~ 262 (530)
T 2ooe_A 208 -------------------------MKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYE 262 (530)
T ss_dssp -------------------------HHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHH
T ss_pred -------------------------HHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHH
Confidence 000000 01111 1222222221111 1122 35556666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHc-------cCCHH-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038622 290 EMESSGCARNVVTYNTLIDGFCK-------LKRIE-------EAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAA 355 (587)
Q Consensus 290 ~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 355 (587)
+++... |.+...|..++..+.+ .|+++ +|..+|++....-.|.+...|..++..+...|++++|.
T Consensus 263 ~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~ 341 (530)
T 2ooe_A 263 QCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVH 341 (530)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHH
Confidence 666543 4556666666666554 56665 77777777765222456667777777777777777777
Q ss_pred HHHHHHHHcCCCCC-H-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHH-HHhcCChHHHHHHHHHHH
Q 038622 356 QLMDQMIMEGLKPD-K-FTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGG-LCKAGRVEVASKLLRSIQ 432 (587)
Q Consensus 356 ~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~ 432 (587)
.+|++++.. .|+ . ..|..++..+.+.|++++|..+|+++++... .+...+...+.. +...|+.++|..+|++++
T Consensus 342 ~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al 418 (530)
T 2ooe_A 342 SIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGL 418 (530)
T ss_dssp HHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 777777764 333 2 3667777777777777778877777776421 123333333222 235778888888888777
Q ss_pred HcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCC--CHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 038622 433 MKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKA-DPP--DALTYKHVFRGLCNGGGPIGEAVDFVIEMLER 505 (587)
Q Consensus 433 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 505 (587)
+..+. +...|..++..+...|+.++|..+|++++..+ .+| ....|...+......|+ .+.+..+..++.+.
T Consensus 419 ~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~-~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 419 KKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD-LASILKVEKRRFTA 492 (530)
T ss_dssp HHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC-HHHHHHHHHHHHHH
T ss_pred HHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHH
Confidence 75332 56777777877778888888888888887753 122 13356666666667777 88888888887763
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-21 Score=181.40 Aligned_cols=285 Identities=10% Similarity=-0.000 Sum_probs=138.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 038622 54 DERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVN 133 (587)
Q Consensus 54 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 133 (587)
++..+...+..+...|++++|+.+++++.+.+ |.+...+..++.++...|++++|..+++++++.. +.+...+..++.
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 33444444444444455555555555544443 3333444444444445555555555555544432 233444444445
Q ss_pred HHHhcC-ChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHH
Q 038622 134 GLCKVG-HVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVE 212 (587)
Q Consensus 134 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 212 (587)
.+...| ++++|.+.|+++.+.. +.+...+..++..+...|++++|+..++++.... +.+...+..++.++...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 555555 4555555555544432 1123444444555555555555555555544443 223344444555555555555
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcC--------CCCCHHhHHHHHHHHHccCChHHH
Q 038622 213 EATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKG--------CQPDEFTYNMLIDSLCSRGMLEEA 284 (587)
Q Consensus 213 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a 284 (587)
+|...++++.+.. +.+...+..++..+...|++++|...++++.+.. .+....++..++.++...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 5555555554432 2234445555555555555555555555544321 022234555555555555666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038622 285 LKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGL 345 (587)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 345 (587)
+..++++.+.. +.+...+..++.++...|++++|...++++.... |.+...+..+..++
T Consensus 256 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 256 LDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 66665555543 3344555555556666666666666665555443 33445555555544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-18 Score=175.48 Aligned_cols=484 Identities=12% Similarity=0.116 Sum_probs=293.4
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHhhccCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038622 22 TFNILIKALCKAHQIRPAILMMEEMPGYG--LAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHG 99 (587)
Q Consensus 22 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 99 (587)
--...+++|...|.+.+|+++++++.-.+ +..+...-+.++.+..+. +..+...+.++.... ....++..
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eIA~I 1058 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDIANI 1058 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHHHHH
Confidence 33555667777777777777777776332 113344445555555544 344444444443311 12336667
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHH
Q 038622 100 FCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEA 179 (587)
Q Consensus 100 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 179 (587)
+...|.+++|..+|++... .......+ +-..+++++|.++.++. -++.+|..++.++...|++++|
T Consensus 1059 ai~lglyEEAf~IYkKa~~-----~~~A~~VL---ie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFDV-----NTSAVQVL---IEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHhCCCHHHHHHHHHHcCC-----HHHHHHHH---HHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHH
Confidence 7777888888888877521 11111222 22567777777777754 2466777888888888888888
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038622 180 VEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTK 259 (587)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 259 (587)
+..|.+. .+...|..++.++.+.|++++|++.|....+.. +++.....++.+|.+.+++++...+ +.
T Consensus 1125 IdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~- 1191 (1630)
T 1xi4_A 1125 IDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN- 1191 (1630)
T ss_pred HHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh-
Confidence 8888653 366777778888888888888888887776653 2333333477777777777753332 21
Q ss_pred CCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 038622 260 GCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYN 339 (587)
Q Consensus 260 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 339 (587)
.++...+..++..+...|++++|..+|..+ ..|..++.++.+.|++++|.+.+++. .+..+|.
T Consensus 1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWk 1254 (1630)
T 1xi4_A 1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWK 1254 (1630)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHH
Confidence 345566667888888888888888888874 26777888888888888888888765 3557787
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhc-
Q 038622 340 TLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKA- 418 (587)
Q Consensus 340 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 418 (587)
.+..+|...|++..|......+ ..++..+..++..|...|.+++|+.+++..+..+ +-....|..++.++.+.
T Consensus 1255 ev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A 1255 EVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred HHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCC
Confidence 7888888888888777765542 2355566778888888888888888888777543 22344565666666543
Q ss_pred -CChHHHHHHHHHHHHcCCCC------ChHhHHHHHHHHHhcCCHHHHHHHH-------------HHHHhcCCCCCHHHH
Q 038622 419 -GRVEVASKLLRSIQMKGIVL------TPQAYNPVIQALFRRKRTTEAMRLF-------------REMMEKADPPDALTY 478 (587)
Q Consensus 419 -~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~-------------~~~~~~~~~~~~~~~ 478 (587)
++..++.+.|..-.. +++ +...|..+...|.+.|+++.|.... +..+.. ..+...+
T Consensus 1329 peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~k--v~n~ely 1404 (1630)
T 1xi4_A 1329 PQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELY 1404 (1630)
T ss_pred HHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcc--cccHHHH
Confidence 344444554443222 222 3467888888888888888887322 222221 4455666
Q ss_pred HHHHHHHHhCC---------------CCHHHHHHHHHHH------------HHcCCCCCHHHHHHHHHHHHccCCHhHHH
Q 038622 479 KHVFRGLCNGG---------------GPIGEAVDFVIEM------------LERGFLPEFSSFYMLAEGLVSLGKEETLV 531 (587)
Q Consensus 479 ~~l~~~~~~~~---------------~~~~~A~~~~~~~------------~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 531 (587)
...+..|...+ + .+.+..++.+. ++ ...+..+-..+...|...++++.-+
T Consensus 1405 ykai~Fyl~~~P~~lndLl~~l~~rlD-~~R~V~l~~~~~~l~lik~yl~~vq--~~n~~~Vneal~el~ieeed~~~Lr 1481 (1630)
T 1xi4_A 1405 YRAIQFYLEFKPLLLNDLLMVLSPRLD-HTRAVNYFSKVKQLPLVKPYLRSVQ--NHNNKSVNESLNNLFITEEDYQALR 1481 (1630)
T ss_pred HHHHHHHHhhChHHHHHHHHHhhhcCC-hHHHHHHHHHcCChHHhHHHHHHHH--HhcchhhhHHHHHHhcCccchHHHH
Confidence 66665555444 4 55555555421 11 0123334445666666666654333
Q ss_pred HHHHHHHhcCC--------CCCch--hhhhhhHHHH-HHHHHHHHhcchh
Q 038622 532 ELIDMVMDKAK--------FSDRE--TSMVRGFLKI-RKFQDALATFGDI 570 (587)
Q Consensus 532 ~~~~~~~~~~~--------~~~~~--~~~~~~~~~~-~~~~~A~~~~~~~ 570 (587)
...+..-..+. ..+.. ..++..+++. |+|.+|++.+++-
T Consensus 1482 ~si~~~~nfd~~~La~~lekheLl~frrIAa~ly~~n~~~~~ai~l~k~d 1531 (1630)
T 1xi4_A 1482 TSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKD 1531 (1630)
T ss_pred HHHhhccCcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCcHHHHHHHHHhc
Confidence 33322111111 12221 4444444444 7888888777653
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.90 E-value=7.9e-22 Score=186.76 Aligned_cols=309 Identities=13% Similarity=0.014 Sum_probs=183.7
Q ss_pred HHhcCChHHHHH-HHHHHHHcCC-CC--CHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 038622 240 LCLTSNFDVAME-LFQEMKTKGC-QP--DEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKR 315 (587)
Q Consensus 240 ~~~~~~~~~a~~-~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 315 (587)
+...|++++|.+ .|++...... .| +...+..++..+...|++++|+..++++.+.. |.+..++..++.++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 334455555555 5554433210 00 12334455555555555555555555555543 3444455555555555555
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 038622 316 IEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQN 395 (587)
Q Consensus 316 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 395 (587)
+++|...++++.... |.+...+..++.++...|++++|...+++++..... +...+..+... . .
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~-------~ 177 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------A-------G 177 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------------
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------h-------h
Confidence 555555555555443 334455555555555555555555555555543211 11111100000 0 0
Q ss_pred HHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 038622 396 MTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVL-TPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPD 474 (587)
Q Consensus 396 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 474 (587)
. ..+ ...+..+...+ ..|++++|..+++++.+..+.. +...+..++.++...|++++|+..++++++.. |.+
T Consensus 178 ~----~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~ 250 (368)
T 1fch_A 178 G----AGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PND 250 (368)
T ss_dssp -------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred h----hcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCC
Confidence 0 000 00011233333 7788888888888888753321 36778888888888888888888888888864 666
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC---------
Q 038622 475 ALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS--------- 544 (587)
Q Consensus 475 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--------- 544 (587)
...+..++..+...|+ +++|+..++++++. .| +..++..++.+|.+.|++++|+..++++++..|..
T Consensus 251 ~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 327 (368)
T 1fch_A 251 YLLWNKLGATLANGNQ-SEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGA 327 (368)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCC
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccc
Confidence 7788888888888888 88888888888874 45 67888888888888888888888888888877765
Q ss_pred ---CchhhhhhhHHHHHHHHHHHHhcchhhhccC
Q 038622 545 ---DRETSMVRGFLKIRKFQDALATFGDILDSRM 575 (587)
Q Consensus 545 ---~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 575 (587)
..+..++.+|...|++++|...+.+.++...
T Consensus 328 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 361 (368)
T 1fch_A 328 MSENIWSTLRLALSMLGQSDAYGAADARDLSTLL 361 (368)
T ss_dssp CCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHH
T ss_pred hhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHH
Confidence 3477888888888888888888887776543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.4e-20 Score=181.82 Aligned_cols=387 Identities=11% Similarity=-0.054 Sum_probs=176.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhC-----C--CCC-CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC------
Q 038622 125 QFTYNTLVNGLCKVGHVKQALEVMDMMLQE-----G--FDP-DVFTYNSLISGLCKLGEVEEAVEILNQMILRD------ 190 (587)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------ 190 (587)
...|+.++.++...|++++|++.|++..+. + ..| ...+|..++.+|...|++++|+..++++....
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345666777777777777777777766541 0 111 23455666666677777777776666654320
Q ss_pred -CCCChhhHHHHHHHHhc--cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH---HhcCChHHHHHHHHHHHHcCCCCC
Q 038622 191 -CSPNTITYNTLISTLCK--ENQVEEATELARVLTSKGILPDVCTFNSLIQGL---CLTSNFDVAMELFQEMKTKGCQPD 264 (587)
Q Consensus 191 -~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~ 264 (587)
......++..++.++.. .+++++|+..|++..+.. +.++..+..+..++ ...++.++|++.+++.++.. +.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 01122334333333332 334566666666655542 11333333333332 23345555555555555543 333
Q ss_pred HHhHHHHHHHHHc----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038622 265 EFTYNMLIDSLCS----RGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNT 340 (587)
Q Consensus 265 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 340 (587)
..++..++..+.. .+++++|.+.++++.... +....++..++..+...|++++|...++++.... |.+..++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHH
Confidence 4444444433322 244555555555555543 3444555555555556666666666665555543 334444444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC
Q 038622 341 LIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGR 420 (587)
Q Consensus 341 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 420 (587)
++.+|...+... ... .. ..........+.++.|...++.+...++. +...+..++..+...|+
T Consensus 287 lg~~y~~~~~~~---------~~~-~~------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 287 IGCCYRAKVFQV---------MNL-RE------NGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHh---------hhH-HH------HHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhcc
Confidence 444432211000 000 00 00000011112345566666665554322 44556666666666666
Q ss_pred hHHHHHHHHHHHHcCCCCCh--HhHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHH
Q 038622 421 VEVASKLLRSIQMKGIVLTP--QAYNPVIQA-LFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVD 497 (587)
Q Consensus 421 ~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~ 497 (587)
+++|...|+++.+..+.+.. ..+..++.. ....|++++|+..|+++++. .|+..... +. ...+.+
T Consensus 350 ~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~---------~~-~~~l~~ 417 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE---------KM-KDKLQK 417 (472)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH---------HH-HHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH---------HH-HHHHHH
Confidence 66666666666654322211 122223322 23456666666666666663 23322111 11 333444
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 498 FVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 498 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
++++.++.+ +.++.++..||.+|...|++++|++.|+++++.+|..+
T Consensus 418 ~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p 464 (472)
T 4g1t_A 418 IAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIP 464 (472)
T ss_dssp HHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-----------------
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 555555532 22566666666666666666666666666666665543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-21 Score=183.51 Aligned_cols=308 Identities=12% Similarity=-0.026 Sum_probs=231.4
Q ss_pred HHhccCCHHHHHH-HHHHHHhCCCC---CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccC
Q 038622 204 TLCKENQVEEATE-LARVLTSKGIL---PDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRG 279 (587)
Q Consensus 204 ~~~~~~~~~~a~~-~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 279 (587)
++...|++++|.. .+++....... .+...+..++..+...|++++|...|+++.+.. +.+..++..++.++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 6667889999998 88866654211 135668889999999999999999999999875 667889999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038622 280 MLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMD 359 (587)
Q Consensus 280 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 359 (587)
++++|+..++++.+.. +.+..++..++.++...|++++|...++++.... |.+...+..+... ..
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-------~~------ 177 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG-------AG------ 177 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC--------------------
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH-------hh------
Confidence 9999999999999876 6688899999999999999999999999998875 3333333221111 00
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038622 360 QMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEP-DIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVL 438 (587)
Q Consensus 360 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 438 (587)
. ..+. ..+..+...+ ..|++++|...++++.+..+.. +...+..++.++...|++++|...++++....+.
T Consensus 178 -~----~~~~-~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~- 249 (368)
T 1fch_A 178 -G----AGLG-PSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN- 249 (368)
T ss_dssp --------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred -h----hccc-HHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-
Confidence 0 0011 1112223333 7788999999999888753321 4667888899999999999999999998886433
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-C-------
Q 038622 439 TPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-E------- 510 (587)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~------- 510 (587)
+...+..++.++...|++++|+..|+++++.. |.+...+..++..+...|+ +++|...++++++. .| +
T Consensus 250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~--~~~~~~~~~~~ 325 (368)
T 1fch_A 250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGA-HREAVEHFLEALNM--QRKSRGPRGEG 325 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH--HHTC------C
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHh--CCCCCCccccc
Confidence 56788999999999999999999999999874 6678888889999999999 99999999999863 23 3
Q ss_pred ----HHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 038622 511 ----FSSFYMLAEGLVSLGKEETLVELIDMVMD 539 (587)
Q Consensus 511 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 539 (587)
..++..++.+|...|++++|..++++.++
T Consensus 326 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 326 GAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp CCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred cchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 68899999999999999999999886554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=8.2e-22 Score=186.26 Aligned_cols=269 Identities=12% Similarity=0.027 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 038622 301 VTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYY 380 (587)
Q Consensus 301 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 380 (587)
..+..++..+...|++++|+..|+++.... |.+...+..++.++...|++++|+..|++++... +.+...+..++.++
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 346666666777777777777777766654 4556667777777777777777777777776642 23455666777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC---------CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHhHHHHHHHH
Q 038622 381 CRAGDIKRAADIVQNMTSNGCE---------PDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVL-TPQAYNPVIQAL 450 (587)
Q Consensus 381 ~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~ 450 (587)
...|++++|...++++.+..+. .....+..++..+...|++++|..+++++....+.. +...+..++..+
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 7777777777777776653211 012233445788888999999999999998864331 567888999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhH
Q 038622 451 FRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEET 529 (587)
Q Consensus 451 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 529 (587)
...|++++|+..|+++++.. |.+...+..++.++...|+ +++|+..++++++. .| +..++..++.+|...|++++
T Consensus 224 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDR-SEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999874 6678888899999999999 99999999999984 45 68889999999999999999
Q ss_pred HHHHHHHHHhcCCC-------------CCchhhhhhhHHHHHHHHHHHHhcchhhhccC
Q 038622 530 LVELIDMVMDKAKF-------------SDRETSMVRGFLKIRKFQDALATFGDILDSRM 575 (587)
Q Consensus 530 A~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 575 (587)
|+..++++++..|. ...+..++.++...|+.+.|....++..+...
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~~~ 358 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVLL 358 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCGGGT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHHHH
Confidence 99999999988776 23478888888899999988888777555443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.8e-20 Score=178.59 Aligned_cols=387 Identities=11% Similarity=-0.057 Sum_probs=252.4
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhC-----C
Q 038622 159 DVFTYNSLISGLCKLGEVEEAVEILNQMILR--------DCSPNTITYNTLISTLCKENQVEEATELARVLTSK-----G 225 (587)
Q Consensus 159 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~ 225 (587)
....|+.++..+...|++++|++.|++.++. ..+....++..++.+|...|++++|...+++.... +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3566888889999999999999999887642 11224456888899999999999999988877642 1
Q ss_pred --CCCCHhhHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH---HccCChHHHHHHHHHHHHCCCCC
Q 038622 226 --ILPDVCTFNSLIQGLCLT--SNFDVAMELFQEMKTKGCQPDEFTYNMLIDSL---CSRGMLEEALKLLKEMESSGCAR 298 (587)
Q Consensus 226 --~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~ 298 (587)
......++.....++... +++++|++.|+++.+.. |.++..+..++.++ ...++.++|++.++++++.+ |.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 011345565555555543 56889999999888774 44566666655553 44577788888888888765 55
Q ss_pred CHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHH
Q 038622 299 NVVTYNTLIDGFCK----LKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYN 374 (587)
Q Consensus 299 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 374 (587)
+..++..++..+.. .+++++|.+.+++..... |.+...+..++..+...|++++|...++++++.. +.+..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 66666666555443 456778888888887765 6677788888888888999999999998888753 22455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 038622 375 SLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRK 454 (587)
Q Consensus 375 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 454 (587)
.++.+|...+... .... ...........+..+.|...++++...++. +...+..++..+...|
T Consensus 286 ~lg~~y~~~~~~~---------~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 286 QIGCCYRAKVFQV---------MNLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh---------hhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhc
Confidence 6666554321111 1100 000111112234568899999998886443 5678899999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCHH--HHHHHHHH-HHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHH
Q 038622 455 RTTEAMRLFREMMEKADPPDAL--TYKHVFRG-LCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLV 531 (587)
Q Consensus 455 ~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~-~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 531 (587)
++++|+..|+++++....+... .+..++.. ....|+ +++|+..|+++++ +.|+...... ....+.
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Ai~~y~kal~--i~~~~~~~~~---------~~~~l~ 416 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKC-EDKAIHHFIEGVK--INQKSREKEK---------MKDKLQ 416 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSC-HHHHHHHHHHHHH--SCCCCHHHHH---------HHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHh--cCcccHHHHH---------HHHHHH
Confidence 9999999999999864222221 22333333 346677 9999999999998 5675332221 234566
Q ss_pred HHHHHHHhcCCCC-CchhhhhhhHHHHHHHHHHHHhcchhhhccCchh
Q 038622 532 ELIDMVMDKAKFS-DRETSMVRGFLKIRKFQDALATFGDILDSRMPRK 578 (587)
Q Consensus 532 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 578 (587)
+++++.++.+|.. ..+..++.+|...|++++|++.|+++++.++...
T Consensus 417 ~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p 464 (472)
T 4g1t_A 417 KIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIP 464 (472)
T ss_dssp HHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 7788888888876 5689999999999999999999999999775443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.2e-18 Score=174.27 Aligned_cols=319 Identities=16% Similarity=0.183 Sum_probs=143.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 038622 93 VNVLVHGFCKEGRIEDALSFIQEMVSEGF--NPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGL 170 (587)
Q Consensus 93 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 170 (587)
....++.|...|.+.+|+++++++.-.+- ..+...-+.++....+. +..+..++..+.... + ...++..+
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Ia 1059 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIA 1059 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHH
Confidence 34444555555555555555555552210 01112222233333333 333333333333211 1 22244455
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHH
Q 038622 171 CKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAM 250 (587)
Q Consensus 171 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 250 (587)
...|.+++|..+|++.. ....+...+ +...+++++|.++.++. .++.+|..++.++...|++++|+
T Consensus 1060 i~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 55555555555555531 011111111 11344555555554433 13445555555555555555555
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 038622 251 ELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQG 330 (587)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 330 (587)
+.|.+. .|...|..++.++.+.|++++|+++|..+.+.. ++......++.+|.+.+++++..... .
T Consensus 1126 dsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~-- 1191 (1630)
T 1xi4_A 1126 DSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N-- 1191 (1630)
T ss_pred HHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h--
Confidence 555332 244445555555555555555555555544432 12112223455555555544322211 1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHH
Q 038622 331 ISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGT 410 (587)
Q Consensus 331 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 410 (587)
.++...+..++..|...|++++|..+|..+ ..|..++.++.+.|+++.|++.+++.. +..+|..
T Consensus 1192 -~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWke 1255 (1630)
T 1xi4_A 1192 -GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKE 1255 (1630)
T ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHH
Confidence 223344444555555555555555555543 134455555555555555555555441 3344555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038622 411 LIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMME 468 (587)
Q Consensus 411 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (587)
+..+|...|++..|......+. .++..+..++..|...|.+++|+.+++..+.
T Consensus 1256 v~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A 1256 VCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred HHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 5555555555555554443211 2344444555555555555555555555554
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-20 Score=174.53 Aligned_cols=266 Identities=11% Similarity=-0.012 Sum_probs=174.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 038622 305 TLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAG 384 (587)
Q Consensus 305 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 384 (587)
.++..+...|++++|..+++++.... |.+...+..++.++...|++++|...+++++... +.+...+..++.++...|
T Consensus 26 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 26 EEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcC
Confidence 33444444444444444444444332 2333444444444444444444444444444431 123334444444444444
Q ss_pred CHHHHHHHHHHHHHCCCCCCcchHHH-------------H-HH-HHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 038622 385 DIKRAADIVQNMTSNGCEPDIVTYGT-------------L-IG-GLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQA 449 (587)
Q Consensus 385 ~~~~A~~~~~~~~~~~~~~~~~~~~~-------------l-~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 449 (587)
++++|...++++....+. +...+.. + +. .+...|++++|..+++++.+..+. +...+..++..
T Consensus 104 ~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 181 (327)
T 3cv0_A 104 NANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVL 181 (327)
T ss_dssp CHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 444444444444443211 1111211 1 22 366778889999999988886443 66788888999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhH
Q 038622 450 LFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEET 529 (587)
Q Consensus 450 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 529 (587)
+...|++++|+..++++++.. +.+...+..++..+...|+ +++|+..++++++.. +.+..++..++.++...|++++
T Consensus 182 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 182 YNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNR-PQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHH
Confidence 999999999999999998874 6677788888888888888 999999999998843 2368888899999999999999
Q ss_pred HHHHHHHHHhcCCC------------C-CchhhhhhhHHHHHHHHHHHHhcchhhhccCch
Q 038622 530 LVELIDMVMDKAKF------------S-DRETSMVRGFLKIRKFQDALATFGDILDSRMPR 577 (587)
Q Consensus 530 A~~~~~~~~~~~~~------------~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 577 (587)
|...++++++..|. . ..+..++.++...|++++|...+++.++..+..
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKE 319 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchh
Confidence 99999999988887 2 346778888999999999999999888776444
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-21 Score=182.84 Aligned_cols=264 Identities=11% Similarity=-0.024 Sum_probs=203.0
Q ss_pred HHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038622 265 EFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDG 344 (587)
Q Consensus 265 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 344 (587)
...+..++..+...|++++|+..|+++.... |.+..++..++.++...|++++|+..|+++.... |.+...+..++.+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3457777777777788888888887777765 5567777777778888888888888888777664 5567777777888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC-----------HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCcchHHHHH
Q 038622 345 LCKSRRVEDAAQLMDQMIMEGLKPD-----------KFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCE-PDIVTYGTLI 412 (587)
Q Consensus 345 ~~~~~~~~~A~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~ 412 (587)
+...|++++|...+++++... |+ ...+..++..+...|++++|...++++....+. ++...+..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 888888888888888877642 22 122334577888899999999999999886332 1567888999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCH
Q 038622 413 GGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPI 492 (587)
Q Consensus 413 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 492 (587)
.++...|++++|...++++.+..+. +..+|..++.++...|++++|+..|+++++.. |.+...+..++.++...|+ +
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~-~ 297 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGA-Y 297 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC-C
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC-H
Confidence 9999999999999999999887443 67889999999999999999999999999874 6678888899999999999 9
Q ss_pred HHHHHHHHHHHHcCCCC-------------CHHHHHHHHHHHHccCCHhHHHHHHHHH
Q 038622 493 GEAVDFVIEMLERGFLP-------------EFSSFYMLAEGLVSLGKEETLVELIDMV 537 (587)
Q Consensus 493 ~~A~~~~~~~~~~~~~p-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 537 (587)
++|+..++++++. .| +..++..++.++...|+.+.|....++.
T Consensus 298 ~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 298 REAVSNFLTALSL--QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHHHH--HHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHh--CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 9999999999863 22 2567889999999999999988877663
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-19 Score=163.42 Aligned_cols=275 Identities=12% Similarity=0.101 Sum_probs=209.5
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 038622 273 DSLCSRGMLEEALKLLKEMESSGCARN--VVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRR 350 (587)
Q Consensus 273 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 350 (587)
+-....|++..|+..++.+.... |+ ......++++|...|+++.|+..++.. .+|+...+..+...+...++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCc
Confidence 34456788888888777655432 22 234456677888888888888766441 25566677777788888888
Q ss_pred HHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 038622 351 VEDAAQLMDQMIMEGLKP-DKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLR 429 (587)
Q Consensus 351 ~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 429 (587)
.++|++.+++++..+..| +...+..++.++...|++++|+..+++ ..+...+..++.++.+.|++++|.+.++
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888888888888765444 455666777888888888888888876 2467788888888999999999999999
Q ss_pred HHHHcCCCCChH-hH--HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 038622 430 SIQMKGIVLTPQ-AY--NPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERG 506 (587)
Q Consensus 430 ~~~~~~~~~~~~-~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 506 (587)
++.+.. |+.. .. ..++..+...|++++|..+|+++++.. |.+...+..++.++...|+ +++|+..++++++.
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~-~~eA~~~l~~al~~- 229 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGR-WEAAEGVLQEALDK- 229 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH-
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh-
Confidence 988864 3332 11 122334445689999999999999984 7788889999999999999 99999999999984
Q ss_pred CCC-CHHHHHHHHHHHHccCCHhH-HHHHHHHHHhcCCCCCchhhhhhhHHHHHHHHHHHHhcc
Q 038622 507 FLP-EFSSFYMLAEGLVSLGKEET-LVELIDMVMDKAKFSDRETSMVRGFLKIRKFQDALATFG 568 (587)
Q Consensus 507 ~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 568 (587)
.| ++.++..++.++...|+.++ +.++++++++.+|.+.... ....+.+.|++|...|.
T Consensus 230 -~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~---d~~~~~~~fd~~~~~~~ 289 (291)
T 3mkr_A 230 -DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK---EYRAKENDFDRLVLQYA 289 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH---HHHHHHHHHHHHHHHHS
T ss_pred -CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH---HHHHHHHHHHHHHHHcC
Confidence 46 79999999999999999976 5789999999999875433 34668888888887774
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.86 E-value=5.7e-20 Score=170.84 Aligned_cols=265 Identities=9% Similarity=-0.001 Sum_probs=175.3
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 038622 269 NMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKS 348 (587)
Q Consensus 269 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 348 (587)
...+..+...|++++|+.+++++.+.. +.+...+..++.++...|++++|...++++.... |.+...+..++..+...
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 102 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHc
Confidence 334444444444444444444444332 2333344444444444444444444444444432 33344444444444444
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHH-------------H-HH-HHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHH
Q 038622 349 RRVEDAAQLMDQMIMEGLKPDKFTYNS-------------L-LT-YYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIG 413 (587)
Q Consensus 349 ~~~~~A~~~~~~~~~~~~~~~~~~~~~-------------l-~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 413 (587)
|++++|...++++..... .+...+.. + .. .+...|++++|...++++.+..+. +...+..++.
T Consensus 103 ~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~ 180 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGV 180 (327)
T ss_dssp TCHHHHHHHHHHHHHTST-TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence 444444444444444211 11111111 1 22 366778889999999988876433 6678888899
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHH
Q 038622 414 GLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIG 493 (587)
Q Consensus 414 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 493 (587)
.+...|++++|...++++.+..+. +...+..++..+...|++++|+..++++++.. +.+...+..++..+...|+ ++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~-~~ 257 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQ-YD 257 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcc-HH
Confidence 999999999999999998886433 56788999999999999999999999999874 6678888889999999999 99
Q ss_pred HHHHHHHHHHHcCCCCC-------------HHHHHHHHHHHHccCCHhHHHHHHHHHHhcCC
Q 038622 494 EAVDFVIEMLERGFLPE-------------FSSFYMLAEGLVSLGKEETLVELIDMVMDKAK 542 (587)
Q Consensus 494 ~A~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 542 (587)
+|...++++++.. |+ ..++..++.++...|++++|...++++++..|
T Consensus 258 ~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 258 LAAKQLVRAIYMQ--VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp HHHHHHHHHHHHH--TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred HHHHHHHHHHHhC--CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 9999999998743 43 67888999999999999999999987766544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-18 Score=168.56 Aligned_cols=219 Identities=11% Similarity=0.024 Sum_probs=100.9
Q ss_pred HHHHHHHHHHccC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHhhHH
Q 038622 302 TYNTLIDGFCKLK---RIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKS----RRVEDAAQLMDQMIMEGLKPDKFTYN 374 (587)
Q Consensus 302 ~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~ 374 (587)
++..++.+|...| ++++|+..|++....+ +++...+..+...|... +++++|...|+++. . .+...+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHH
Confidence 3444444444444 4444444444444443 33333333344444332 34555555555544 1 1233333
Q ss_pred HHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcC-----ChHHHHHHHHHHHHcCCCCChHhHHHH
Q 038622 375 SLLTY-Y--CRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAG-----RVEVASKLLRSIQMKGIVLTPQAYNPV 446 (587)
Q Consensus 375 ~l~~~-~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l 446 (587)
.+... + ...+++++|...|++..+.| +...+..++.+|. .| ++++|..+|++.. . .++.++..+
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~L 324 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYL 324 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHH
Confidence 44433 2 23455555555555555433 3344445555444 33 5566666655555 1 244555555
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038622 447 IQALFR----RKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCN----GGGPIGEAVDFVIEMLERGFLPEFSSFYMLA 518 (587)
Q Consensus 447 ~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 518 (587)
+..|.. ..++++|...|+++.+.| .++ ....++..|.. ..+ .++|..+|+++.+.| +..+...+.
T Consensus 325 g~~y~~G~g~~~d~~~A~~~~~~Aa~~g-~~~--A~~~Lg~~y~~G~g~~~d-~~~A~~~~~~A~~~g---~~~a~~~l~ 397 (452)
T 3e4b_A 325 GQIYRRGYLGKVYPQKALDHLLTAARNG-QNS--ADFAIAQLFSQGKGTKPD-PLNAYVFSQLAKAQD---TPEANDLAT 397 (452)
T ss_dssp HHHHHTTTTSSCCHHHHHHHHHHHHTTT-CTT--HHHHHHHHHHSCTTBCCC-HHHHHHHHHHHHTTC---CHHHHHHHH
T ss_pred HHHHHCCCCCCcCHHHHHHHHHHHHhhC-hHH--HHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 555544 236666666666666544 222 22334433332 123 666666666666543 222222233
Q ss_pred HHH--HccCCHhHHHHHHHHHHhc
Q 038622 519 EGL--VSLGKEETLVELIDMVMDK 540 (587)
Q Consensus 519 ~~~--~~~g~~~~A~~~~~~~~~~ 540 (587)
.+. ...++.++|....++..+.
T Consensus 398 ~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 398 QLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHh
Confidence 322 2334555666666555444
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-18 Score=155.75 Aligned_cols=273 Identities=11% Similarity=0.039 Sum_probs=197.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCH--HhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 038622 238 QGLCLTSNFDVAMELFQEMKTKGCQPDE--FTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKR 315 (587)
Q Consensus 238 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 315 (587)
+.....|++..|+..++..... .|+. .....++++|...|+++.|+..++. . .+|+..++..++..+...++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCc
Confidence 3455678888888877765443 3332 3456667888888888888876644 1 25666777778888888888
Q ss_pred HHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 038622 316 IEEAEEIFDEMEIQGI-SRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQ 394 (587)
Q Consensus 316 ~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 394 (587)
.++|++.++++...+. |.+...+..++.++...|++++|+..+++ +.+...+..++.++...|++++|...++
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8888888888876642 45666777777888888888888888876 3466778888888888888888888888
Q ss_pred HHHHCCCCCCcchHHHH----HHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038622 395 NMTSNGCEPDIVTYGTL----IGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKA 470 (587)
Q Consensus 395 ~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 470 (587)
++.+.+ |+.. ...+ +..+...|++++|..+|+++.+..+ .+...++.++.++...|++++|...|+++++..
T Consensus 155 ~~~~~~--p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 155 KMQDQD--EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHC--TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhhC--cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 888753 4432 2222 2334455889999999999888743 367888889999999999999999999998875
Q ss_pred CCCCHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHH
Q 038622 471 DPPDALTYKHVFRGLCNGGGPIG-EAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELI 534 (587)
Q Consensus 471 ~~~~~~~~~~l~~~~~~~~~~~~-~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 534 (587)
|.+..++..++..+...|+ .+ .+.++++++++ +.| ++.+. +...+.+.++++..-|
T Consensus 231 -p~~~~~l~~l~~~~~~~g~-~~eaa~~~~~~~~~--~~P~~~~~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 231 -SGHPETLINLVVLSQHLGK-PPEVTNRYLSQLKD--AHRSHPFIK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp -TTCHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHH--HCTTCHHHH----HHHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHH--hCCCChHHH----HHHHHHHHHHHHHHHc
Confidence 6778888888888888888 55 46788888887 457 44433 2345555555555433
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.2e-19 Score=170.02 Aligned_cols=379 Identities=12% Similarity=0.041 Sum_probs=248.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCH---HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 038622 166 LISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQV---EEATELARVLTSKGILPDVCTFNSLIQGLCL 242 (587)
Q Consensus 166 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 242 (587)
++..+.+.|++++|+++|+++...+ ++.++..++..+...|+. ++|+.+|++..+. ++..+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4555666677777777777666554 344555566666666666 6777777666643 44455555554444
Q ss_pred cC-----ChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCCh---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 038622 243 TS-----NFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGML---EEALKLLKEMESSGCARNVVTYNTLIDGFCKLK 314 (587)
Q Consensus 243 ~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 314 (587)
.+ ++++|..+|++..+.+ .+ ..+..++..|...+.. .++.+.+......+ +......++..|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g-~~--~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANG-EG--NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTT-CS--SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCC-CH--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 43 6677777777777765 22 2566666666655433 33555555555544 3446677778888777
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc----CCHH
Q 038622 315 RIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSR---RVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRA----GDIK 387 (587)
Q Consensus 315 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~ 387 (587)
.++++......+...-...++..+..+..+|...| ++++|+..|+++...| .++...+..+...|... ++++
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHH
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHH
Confidence 55444443222222211234448888999999999 9999999999999976 34556556777777654 7999
Q ss_pred HHHHHHHHHHHCCCCCCcchHHHHHHH-H--HhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC-----CHHHH
Q 038622 388 RAADIVQNMTSNGCEPDIVTYGTLIGG-L--CKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRK-----RTTEA 459 (587)
Q Consensus 388 ~A~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A 459 (587)
+|...|++.. . .+...+..++.+ + ...+++++|..+|++..+.+ +..++..++..|. .| ++++|
T Consensus 235 ~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 235 TAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 9999999988 3 366778888887 4 46899999999999999864 6788889998888 55 99999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHhHHH
Q 038622 460 MRLFREMMEKADPPDALTYKHVFRGLCN----GGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVS----LGKEETLV 531 (587)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~ 531 (587)
++.|+++. . .+......++..+.. ..+ +++|..+|+++.+.| ++.+...|+.+|.. ..++++|.
T Consensus 307 ~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d-~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~ 378 (452)
T 3e4b_A 307 EAHFEKAV-G---REVAADYYLGQIYRRGYLGKVY-PQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAY 378 (452)
T ss_dssp HHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCC-HHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHH
T ss_pred HHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcC-HHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHH
Confidence 99999998 3 356667777766655 225 999999999999754 56677889999875 46899999
Q ss_pred HHHHHHHhcCCCCC-chhhhhhhHHHHHHHHHHHHhcchhhhcc
Q 038622 532 ELIDMVMDKAKFSD-RETSMVRGFLKIRKFQDALATFGDILDSR 574 (587)
Q Consensus 532 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 574 (587)
.+++++.+.++... .....+......++..+|....+++..+.
T Consensus 379 ~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~ 422 (452)
T 3e4b_A 379 VFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELAAR 422 (452)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 99999999876432 12333334456678888888888877764
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=7.3e-19 Score=161.17 Aligned_cols=238 Identities=16% Similarity=0.154 Sum_probs=57.6
Q ss_pred hcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHH
Q 038622 67 EEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALE 146 (587)
Q Consensus 67 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 146 (587)
+.|++++|.++++++ +++.+|..++.++.+.|++++|++.|.+. +|...|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 344555555555554 12235555555555555555555555331 234455555555555555555555
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCC
Q 038622 147 VMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGI 226 (587)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 226 (587)
+++...+. .+++.+...++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 44444432 2234444455555555555555554442 233345555555555555555555555433
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 038622 227 LPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTL 306 (587)
Q Consensus 227 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 306 (587)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. ..+.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHH
Confidence 23455555555555555555555544 134455555555555555555533222211 122222334
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038622 307 IDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLC 346 (587)
Q Consensus 307 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 346 (587)
+..|.+.|.+++|+.+++...... +.....|..+..+|+
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ 252 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 252 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHH
Confidence 444555555555555555444333 333444444444443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-18 Score=159.91 Aligned_cols=284 Identities=14% Similarity=0.148 Sum_probs=132.5
Q ss_pred HHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 038622 31 CKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDAL 110 (587)
Q Consensus 31 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 110 (587)
-+.|++++|.++++++. ++.+|..++.++.+.|++++|++.|.++ ++...|..++..+...|++++|+
T Consensus 14 ~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 35788999999999883 3459999999999999999999999653 35568888899999999999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038622 111 SFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRD 190 (587)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 190 (587)
.+++...+. .+++.+...++.+|.+.|++.++.++++ .|+..+|..++..|...|.+++|...|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 988877764 4557788889999999999999888774 367779999999999999999999999975
Q ss_pred CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHH
Q 038622 191 CSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNM 270 (587)
Q Consensus 191 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 270 (587)
..|..++.++.+.|++++|++.++++ .++.+|..++.+|...|+++.|......+ ...+.-...
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHH
Confidence 47889999999999999999999988 27889999999999999999996655432 234444556
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-cCCCC------CHHHHHHHHH
Q 038622 271 LIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEI-QGISR------NSVTYNTLID 343 (587)
Q Consensus 271 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~------~~~~~~~l~~ 343 (587)
++..|.+.|.+++|+.+++..+... +-....|..++.+|++- ++++..+.++.... .++|+ +...|..+..
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999998776 56677888888777764 34444444433221 12232 4567888888
Q ss_pred HHHhcCCHHHHHHH
Q 038622 344 GLCKSRRVEDAAQL 357 (587)
Q Consensus 344 ~~~~~~~~~~A~~~ 357 (587)
.|...++++.|...
T Consensus 291 ly~~~~e~d~A~~t 304 (449)
T 1b89_A 291 LYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHTTCHHHHHHH
T ss_pred HHHhhchHHHHHHH
Confidence 88888999888764
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-18 Score=150.83 Aligned_cols=196 Identities=14% Similarity=0.001 Sum_probs=108.1
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 038622 369 DKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQ 448 (587)
Q Consensus 369 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 448 (587)
+...+..++..+...|++++|...++++++.++. +...+..++.++...|++++|...++++.+..+. +...+..++.
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 3444555555555555555555555555554322 3445555555555555555555555555554322 3445555555
Q ss_pred HHHhc-----------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038622 449 ALFRR-----------KRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYML 517 (587)
Q Consensus 449 ~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 517 (587)
++... |++++|+..|+++++.. |.+...+..++.++...|+ +++|+..++++++.+ .++.++..+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGE-RDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcc--cchHHHHHH
Confidence 55555 66666666666666653 4455566666666666666 666666666666654 556666666
Q ss_pred HHHHHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHHHHHHHHHhcchh
Q 038622 518 AEGLVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFLKIRKFQDALATFGDI 570 (587)
Q Consensus 518 ~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~ 570 (587)
+.+|...|++++|+..++++++..|.. +.+..++.++...|++++|+..|+++
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666777776676666666655 33556666666666666666666554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.2e-18 Score=146.92 Aligned_cols=200 Identities=15% Similarity=0.057 Sum_probs=152.0
Q ss_pred CCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHH
Q 038622 17 KPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVL 96 (587)
Q Consensus 17 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 96 (587)
|++...+..+...+.+.|++++|+..|+.+++.. |.++..+..++..+.+.|++++|+..++++++.+ |.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 6777888888889999999999999999988876 7788889999999999999999999999998886 6677788888
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHH
Q 038622 97 VHGFCKE-----------GRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNS 165 (587)
Q Consensus 97 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 165 (587)
+.++... |++++|+..++++++.. |.+...+..++.++...|++++|++.|+++++.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 8888888 88888888888888763 4456778888888888888888888888888765 56777788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 038622 166 LISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLT 222 (587)
Q Consensus 166 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 222 (587)
++.++...|++++|+..|++++..+ |.+..++..++.++...|++++|+..+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 8888888888888888888887775 5567777888888888888888888777654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.8e-17 Score=148.14 Aligned_cols=226 Identities=16% Similarity=0.173 Sum_probs=170.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CC----HhhHH
Q 038622 301 VTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLK--PD----KFTYN 374 (587)
Q Consensus 301 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~----~~~~~ 374 (587)
..+..++..+...|++++|+..|+++.... .+...+..++.++...|++++|...+++++..... ++ ...+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 456666677777777777777777776665 55667777777777777777777777777653211 11 45677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 038622 375 SLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRK 454 (587)
Q Consensus 375 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 454 (587)
.++.++...|++++|...++++... .|+ ...+...|++++|...++++....+. +...+..++..+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRT-------ADILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCC-------HHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cch-------hHHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhc
Confidence 7777788888888888888887774 233 23456667888888888888875322 4567888888899999
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHH
Q 038622 455 RTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELI 534 (587)
Q Consensus 455 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 534 (587)
++++|+..++++++.. +.+...+..++..+...|+ +++|+..++++++.. +.++.++..++.++...|++++|...+
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMS-FPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999999999998874 6677888888888888888 999999999998843 336888888999999999999999999
Q ss_pred HHHHhcC
Q 038622 535 DMVMDKA 541 (587)
Q Consensus 535 ~~~~~~~ 541 (587)
+++++..
T Consensus 231 ~~a~~~~ 237 (258)
T 3uq3_A 231 DAARTKD 237 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 9998887
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.79 E-value=3.1e-17 Score=152.79 Aligned_cols=245 Identities=9% Similarity=0.047 Sum_probs=187.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 038622 300 VVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRR-VEDAAQLMDQMIMEGLKPDKFTYNSLLT 378 (587)
Q Consensus 300 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 378 (587)
..++..++.++...|++++|+..+++++..+ |.+...|..++.++...|+ +++|+..+++++.... .+...|..++.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
Confidence 3456667777777888888888888887765 5567778888888888886 8888888888887532 25667888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh-cCCHH
Q 038622 379 YYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFR-RKRTT 457 (587)
Q Consensus 379 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 457 (587)
++...|++++|+..++++++.++. +...|..++.++...|++++|+..++++++.++. +..+|+.++.++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 888888888888888888876544 6777888888888888888888888888887554 67888888888888 55557
Q ss_pred HH-----HHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccC-----
Q 038622 458 EA-----MRLFREMMEKADPPDALTYKHVFRGLCNGGG-PIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLG----- 525 (587)
Q Consensus 458 ~A-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g----- 525 (587)
+| +..|++++... |.+...|..+..++...|. ++++|++.+.++ + ..| +..++..++++|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhccccc
Confidence 77 58888888874 6677788888888887772 278898888887 4 345 6788888999988874
Q ss_pred ---C-HhHHHHHHHHH-HhcCCCCC-chhhhhh
Q 038622 526 ---K-EETLVELIDMV-MDKAKFSD-RETSMVR 552 (587)
Q Consensus 526 ---~-~~~A~~~~~~~-~~~~~~~~-~~~~~~~ 552 (587)
+ +++|+++++++ .+.+|... .|..++.
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~ 361 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIRKEYWRYIGR 361 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 2 58899999998 88888653 3444443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-17 Score=149.31 Aligned_cols=226 Identities=12% Similarity=0.100 Sum_probs=198.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC----cchH
Q 038622 335 SVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCE--PD----IVTY 408 (587)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~----~~~~ 408 (587)
...+..++..+...|++++|...+++++... .+...+..++.++...|++++|...++++++.... ++ ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4577888999999999999999999999976 67889999999999999999999999998874221 11 4778
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhC
Q 038622 409 GTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNG 488 (587)
Q Consensus 409 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (587)
..++.++...|++++|...++++... .|+ ...+...|++++|...++++.... +.+...+..++..+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRT-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCC-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cch-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 89999999999999999999999985 344 345667788999999999999864 55667788899999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHHHHHHHHHhc
Q 038622 489 GGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFLKIRKFQDALATF 567 (587)
Q Consensus 489 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~ 567 (587)
|+ +++|+..++++++.. +.++.++..++.++...|++++|+..++++++..|.. ..+..++.++.+.|++++|+..|
T Consensus 153 ~~-~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SD-WPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TC-HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cC-HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99 999999999999853 3378999999999999999999999999999999886 45888999999999999999999
Q ss_pred chhhhcc
Q 038622 568 GDILDSR 574 (587)
Q Consensus 568 ~~~~~~~ 574 (587)
+++++..
T Consensus 231 ~~a~~~~ 237 (258)
T 3uq3_A 231 DAARTKD 237 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 9999987
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.78 E-value=2.9e-17 Score=152.99 Aligned_cols=237 Identities=12% Similarity=0.089 Sum_probs=203.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCcchHHHHH
Q 038622 334 NSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGD-IKRAADIVQNMTSNGCEPDIVTYGTLI 412 (587)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l~ 412 (587)
....|..+..++...|++++|+..+++++... +.+...|..++.++...|+ +++|+..+++++..++. +...|..++
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence 34677888888999999999999999999863 2357789999999999996 99999999999997554 678999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCH
Q 038622 413 GGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPI 492 (587)
Q Consensus 413 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 492 (587)
.++...|++++|+..++++++.++. +..+|..++.++...|++++|+..|+++++.+ |.+...|..++.++...++..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999997655 77899999999999999999999999999985 778889999999998844425
Q ss_pred HHH-----HHHHHHHHHcCCCC-CHHHHHHHHHHHHccC--CHhHHHHHHHHHHhcCCCCC-chhhhhhhHHHHH-----
Q 038622 493 GEA-----VDFVIEMLERGFLP-EFSSFYMLAEGLVSLG--KEETLVELIDMVMDKAKFSD-RETSMVRGFLKIR----- 558 (587)
Q Consensus 493 ~~A-----~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----- 558 (587)
++| +..++++++ +.| +..+|..++.++...| ++++|++.++++ +..|... .+..++.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhccccc
Confidence 888 589999998 457 7889999999999988 699999999998 6666653 4678888898875
Q ss_pred ----HHHHHHHhcchh-hhccCch
Q 038622 559 ----KFQDALATFGDI-LDSRMPR 577 (587)
Q Consensus 559 ----~~~~A~~~~~~~-~~~~~~~ 577 (587)
.+++|+..|+++ .+..+..
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r 352 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIR 352 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred chHHHHHHHHHHHHHHHHHhCchh
Confidence 369999999999 6766543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.7e-17 Score=148.25 Aligned_cols=243 Identities=13% Similarity=0.069 Sum_probs=178.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HhhHHHHH
Q 038622 300 VVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPD--KFTYNSLL 377 (587)
Q Consensus 300 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~ 377 (587)
...+...+..+...|++++|+..++++.... |.+...+..++.++...|++++|+..+++++..+..|+ ...+..++
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3455667788888888888888888888765 45566788888888888888888888888887432222 22477788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHH
Q 038622 378 TYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTT 457 (587)
Q Consensus 378 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 457 (587)
.++...|++++|...++++.+..+. +...+..++.++...|++++|...++++.+..+. +...+..++..+...++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888875433 5677888888888888888888888888876332 5667777774444456888
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcC-CCCC------HHHHHHHHHHHHccCCHh
Q 038622 458 EAMRLFREMMEKADPPDALTYKHVFRGLCNGGGP--IGEAVDFVIEMLERG-FLPE------FSSFYMLAEGLVSLGKEE 528 (587)
Q Consensus 458 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~A~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~~~ 528 (587)
+|+..|+++++.. |.+...+..++..+...|+. +++|+..++++++.. -.|+ ..++..++.+|...|+++
T Consensus 160 ~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 8888888888864 55566666666666655531 566888888887531 0133 256777888888888888
Q ss_pred HHHHHHHHHHhcCCCCCc
Q 038622 529 TLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 529 ~A~~~~~~~~~~~~~~~~ 546 (587)
+|+..++++++.+|.++.
T Consensus 239 ~A~~~~~~al~~~p~~~~ 256 (272)
T 3u4t_A 239 KADAAWKNILALDPTNKK 256 (272)
T ss_dssp HHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHhcCccHHH
Confidence 888888888888887643
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.78 E-value=9e-17 Score=144.75 Aligned_cols=230 Identities=11% Similarity=0.111 Sum_probs=100.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--cchHHHHHHHHHh
Q 038622 340 TLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPD--IVTYGTLIGGLCK 417 (587)
Q Consensus 340 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~ 417 (587)
..+..+...|++++|+..++++++.. +.+...+..++.++...|++++|+..+++++..+..|+ ...+..++.++..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 33444444455555555555544431 11223444444444455555555555554444211111 1114444444455
Q ss_pred cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHH
Q 038622 418 AGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVD 497 (587)
Q Consensus 418 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~ 497 (587)
.|++++|.+.++++.+..+. +...+..++.++...|++++|+..++++++.. |.+...+..++..+...++ +++|+.
T Consensus 87 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~-~~~A~~ 163 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKE-YVKADS 163 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTC-HHHHHH
T ss_pred cccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHH-HHHHHH
Confidence 55555555555544443222 33444444555555555555555555444432 3333344444322222333 455555
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHccCC---HhHHHHHHHHHHhcC---CCC------CchhhhhhhHHHHHHHHHHH
Q 038622 498 FVIEMLERGFLP-EFSSFYMLAEGLVSLGK---EETLVELIDMVMDKA---KFS------DRETSMVRGFLKIRKFQDAL 564 (587)
Q Consensus 498 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~---~~~------~~~~~~~~~~~~~~~~~~A~ 564 (587)
.++++++. .| +...+..++.++...|+ +++|+..++++++.. |.+ ..+..++.+|.+.|++++|+
T Consensus 164 ~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 164 SFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 55555442 23 34444444444444444 444454444444432 211 12333444444445555555
Q ss_pred HhcchhhhccC
Q 038622 565 ATFGDILDSRM 575 (587)
Q Consensus 565 ~~~~~~~~~~~ 575 (587)
..|+++++..|
T Consensus 242 ~~~~~al~~~p 252 (272)
T 3u4t_A 242 AAWKNILALDP 252 (272)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHhcCc
Confidence 55555544443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-15 Score=137.29 Aligned_cols=228 Identities=10% Similarity=-0.032 Sum_probs=175.9
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHhhH
Q 038622 298 RNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCK----SRRVEDAAQLMDQMIMEGLKPDKFTY 373 (587)
Q Consensus 298 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~ 373 (587)
.+..++..++..+...|++++|...|++... +.+...+..+...+.. .+++++|...|+++.+.+ +...+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 3455666777777777777777777777776 3355666777777777 788888888888877753 56677
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChHhHHH
Q 038622 374 NSLLTYYCR----AGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCK----AGRVEVASKLLRSIQMKGIVLTPQAYNP 445 (587)
Q Consensus 374 ~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 445 (587)
..++..+.. .+++++|+..+++..+.+ +...+..++..|.. .+++++|..+++++.+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 777777877 888888888888887753 56677788888887 888888888888888753 5667778
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038622 446 VIQALFR----RKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCN----GGGPIGEAVDFVIEMLERGFLPEFSSFYML 517 (587)
Q Consensus 446 l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 517 (587)
++..+.. .+++++|+..|+++.+.+ +...+..++..+.. .++ +++|+..++++++.+ | +..+..+
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~-~~~A~~~~~~a~~~~--~-~~a~~~l 224 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKN-FKEALARYSKACELE--N-GGGCFNL 224 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCC-HHHHHHHHHHHHHTT--C-HHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcc-HHHHHHHHHHHHhCC--C-HHHHHHH
Confidence 8888887 888999999998888753 45666777777877 777 899999999988743 3 7778888
Q ss_pred HHHHHc----cCCHhHHHHHHHHHHhcCCCC
Q 038622 518 AEGLVS----LGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 518 ~~~~~~----~g~~~~A~~~~~~~~~~~~~~ 544 (587)
+.+|.. .|++++|+.+++++.+.+|..
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 888888 889999999999998888753
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=6.9e-17 Score=145.82 Aligned_cols=246 Identities=9% Similarity=-0.014 Sum_probs=186.8
Q ss_pred HccCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHH
Q 038622 311 CKLKRIEEAEEIFDEMEIQGI---SRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIK 387 (587)
Q Consensus 311 ~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 387 (587)
...|++++|+..++++..... +.+...+..++..+...|++++|...|++++... +.+...+..++.++...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 345678888888888776531 2245677778888888888888888888888753 335778888888888889999
Q ss_pred HHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038622 388 RAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMM 467 (587)
Q Consensus 388 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 467 (587)
+|...++++++..+. +...+..++.++...|++++|...++++.+.. |+..........+...|++++|...+.++.
T Consensus 95 ~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999888885433 56788888999999999999999999998853 343333344445567799999999998888
Q ss_pred hcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCC
Q 038622 468 EKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-----EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAK 542 (587)
Q Consensus 468 ~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 542 (587)
... +++...+ .++..+...++ .++|...++++++. .| +..++..++.+|...|++++|...++++++.+|
T Consensus 172 ~~~-~~~~~~~-~~~~~~~~~~~-~~~a~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 172 EKS-DKEQWGW-NIVEFYLGNIS-EQTLMERLKADATD--NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHS-CCCSTHH-HHHHHHTTSSC-HHHHHHHHHHHCCS--HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred hcC-CcchHHH-HHHHHHHHhcC-HHHHHHHHHHHhcc--cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 863 4444444 46666777777 89999999998753 23 257888999999999999999999999999988
Q ss_pred CCCchhhhhhhHHHHHHHHHHHHhc
Q 038622 543 FSDRETSMVRGFLKIRKFQDALATF 567 (587)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~A~~~~ 567 (587)
.. +..+..++...|++++|++.+
T Consensus 247 ~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 247 HN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TT--CHHHHHHHHHHHHHHHC----
T ss_pred hh--HHHHHHHHHHHHHHHhhHHHH
Confidence 65 344566788999999999887
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=3.4e-16 Score=140.91 Aligned_cols=233 Identities=7% Similarity=-0.053 Sum_probs=203.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCcch
Q 038622 332 SRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCR----AGDIKRAADIVQNMTSNGCEPDIVT 407 (587)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~ 407 (587)
+.++..+..+...+...|++++|...|+++.+. .+...+..++..+.. .+++++|...|++..+.+ +...
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 346778888999999999999999999999983 356778889999999 999999999999999864 6778
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 038622 408 YGTLIGGLCK----AGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFR----RKRTTEAMRLFREMMEKADPPDALTYK 479 (587)
Q Consensus 408 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 479 (587)
+..++.+|.. .+++++|...++++.+.+ +..++..++..+.. .+++++|+..|+++.+.+ +...+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 8999999999 999999999999999863 77889999999999 999999999999999965 566677
Q ss_pred HHHHHHHh----CCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHhHHHHHHHHHHhcCCCCCchhhhh
Q 038622 480 HVFRGLCN----GGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVS----LGKEETLVELIDMVMDKAKFSDRETSMV 551 (587)
Q Consensus 480 ~l~~~~~~----~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 551 (587)
.++..+.. .++ +++|+..++++++. .++.++..++.+|.. .+++++|+.+++++++.++ .+....++
T Consensus 151 ~lg~~~~~~~~~~~~-~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~~l~ 225 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKD-LKKALASYDKACDL---KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-GGGCFNLG 225 (273)
T ss_dssp HHHHHHHHTSSSCCC-HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred HHHHHHHcCCCCCCC-HHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-HHHHHHHH
Confidence 78888877 788 99999999999985 357888999999999 9999999999999999876 45678888
Q ss_pred hhHHH----HHHHHHHHHhcchhhhccCchhhhh
Q 038622 552 RGFLK----IRKFQDALATFGDILDSRMPRKTFR 581 (587)
Q Consensus 552 ~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~ 581 (587)
.+|.. .+++++|+..|+++.+.++......
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~ 259 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDI 259 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 88988 9999999999999999987655443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.76 E-value=4.9e-14 Score=140.09 Aligned_cols=454 Identities=9% Similarity=0.017 Sum_probs=217.6
Q ss_pred hhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC---HHHHHHH
Q 038622 36 IRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGR---IEDALSF 112 (587)
Q Consensus 36 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~ 112 (587)
....+..|++.+..+ |.|...|..++..+.+.++++.+..+|++++.. .|.....|...+..-.+.|+ ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 344455566666555 667777777777777777777777777777766 36666777777777667676 7777777
Q ss_pred HHHHHHCC-CCCChhhHHHHHHHHHhcCCh--------HHHHHHHHHHHh-CCC-CCC-cccHHHHHHHHHh--------
Q 038622 113 IQEMVSEG-FNPDQFTYNTLVNGLCKVGHV--------KQALEVMDMMLQ-EGF-DPD-VFTYNSLISGLCK-------- 172 (587)
Q Consensus 113 ~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~~-------- 172 (587)
|++.+... .+|++..|...+....+.++. +.+.++|+.++. .|. .++ ...|...+.....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 77777652 126666777666655554443 233456665554 233 333 2344444433221
Q ss_pred -cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHH
Q 038622 173 -LGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAME 251 (587)
Q Consensus 173 -~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 251 (587)
.++.+.+..+|+.++.........+|...... +.. . + ..+-..++.- ...+++.|..
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~f-------e~~-------~--~----~~~a~~~~~e--~~~~y~~Ar~ 263 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQW-------EQD-------V--N----QLTARRHIGE--LSAQYMNARS 263 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHH-------HHH-------H--C----TTTHHHHHHH--HHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHH-------HHh-------c--C----cchHHHHHHH--hhHHHHHHHH
Confidence 22345566666665532101001111111100 000 0 0 0000000000 1113333444
Q ss_pred HHHHHHHc--CC----CCC-------------------HHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 038622 252 LFQEMKTK--GC----QPD-------------------EFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTL 306 (587)
Q Consensus 252 ~~~~~~~~--~~----~~~-------------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 306 (587)
.+.++... ++ +.. ...|...+..-...+.- ....
T Consensus 264 ~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~----------------l~~~----- 322 (679)
T 4e6h_A 264 LYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLE----------------LSDD----- 322 (679)
T ss_dssp HHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTC----------------CCHH-----
T ss_pred HHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCcc----------------ccch-----
Confidence 44332211 00 000 01122222111111000 0000
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCCHhhHHHHHHHHHhcCC
Q 038622 307 IDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAA-QLMDQMIMEGLKPDKFTYNSLLTYYCRAGD 385 (587)
Q Consensus 307 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 385 (587)
...+.+..+|++++... +..+..|...+..+...|+.++|. .+|++++.. .+.+...+..++......|+
T Consensus 323 -------~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~ 393 (679)
T 4e6h_A 323 -------LHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTK 393 (679)
T ss_dssp -------HHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTC
T ss_pred -------hhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCC
Confidence 00122334455544432 445555555555555555555554 555555543 22233344445555555555
Q ss_pred HHHHHHHHHHHHHCCC---------CC------------CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHH
Q 038622 386 IKRAADIVQNMTSNGC---------EP------------DIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYN 444 (587)
Q Consensus 386 ~~~A~~~~~~~~~~~~---------~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 444 (587)
++.|..+|+.++.... .| ...+|...+....+.|+.+.|..+|.++.+.........|.
T Consensus 394 ~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi 473 (679)
T 4e6h_A 394 IPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYL 473 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHH
Confidence 6666655555544200 01 11245555555556666666666666666531111234444
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHH
Q 038622 445 PVIQALFRRK-RTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP--EFSSFYMLAEGL 521 (587)
Q Consensus 445 ~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~ 521 (587)
..+..-...+ +++.|.++|+.+++. .+.+...+...+......|+ .+.|..+|++++....++ ....|...+..-
T Consensus 474 ~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~-~~~AR~lferal~~~~~~~~~~~lw~~~~~fE 551 (679)
T 4e6h_A 474 ENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNE-ESQVKSLFESSIDKISDSHLLKMIFQKVIFFE 551 (679)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 4444333433 366666666666665 34455555555555555566 666666666666532111 234555555555
Q ss_pred HccCCHhHHHHHHHHHHhcCCCCC
Q 038622 522 VSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 522 ~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
.+.|+.+.+..+.+++.+..|+++
T Consensus 552 ~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 552 SKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCc
Confidence 566666666666666666666654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.75 E-value=7e-14 Score=138.98 Aligned_cols=148 Identities=11% Similarity=0.028 Sum_probs=115.4
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHH
Q 038622 4 VETAHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGN---LDGALRIREQ 80 (587)
Q Consensus 4 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~ 80 (587)
-+..+++.+..+ |-|...|..+++.+.+.++++.+..+|+++...- |.....|...+..-.+.|+ ++.+..+|++
T Consensus 51 ~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR 128 (679)
T 4e6h_A 51 VIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPVLAR 128 (679)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence 345667777776 7899999999999999999999999999999874 7889999999999999999 9999999999
Q ss_pred HHHcCC-CCChhhHHHHHHHHHhcCCH--------HHHHHHHHHHHH-CCC-CC-ChhhHHHHHHHHHh---------cC
Q 038622 81 MVEHGC-LVTNVTVNVLVHGFCKEGRI--------EDALSFIQEMVS-EGF-NP-DQFTYNTLVNGLCK---------VG 139 (587)
Q Consensus 81 ~~~~~~-~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~---------~~ 139 (587)
++...+ +++...|...+....+.++. +.+.++|+.++. .|. .+ +...|...+..... ++
T Consensus 129 al~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~ 208 (679)
T 4e6h_A 129 CLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ 208 (679)
T ss_dssp HTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence 998741 37888898888776665553 345578887765 354 34 34678887776542 34
Q ss_pred ChHHHHHHHHHHHh
Q 038622 140 HVKQALEVMDMMLQ 153 (587)
Q Consensus 140 ~~~~a~~~~~~~~~ 153 (587)
+++.+..+|+.++.
T Consensus 209 ~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 209 RVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 57789999999886
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.4e-16 Score=151.21 Aligned_cols=293 Identities=14% Similarity=0.106 Sum_probs=172.6
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHc----CC-CCCHH
Q 038622 266 FTYNMLIDSLCSRGMLEEALKLLKEMESSGCARN----VVTYNTLIDGFCKLKRIEEAEEIFDEMEIQ----GI-SRNSV 336 (587)
Q Consensus 266 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~ 336 (587)
..+...+..+...|++++|+..|+++.... +.+ ..++..++.++...|++++|...++++... +. +....
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 334444444555555555555555554432 122 123444455555555555555555543221 10 11133
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HhhHHHHHHHHHhcCC--------------------HHHHHH
Q 038622 337 TYNTLIDGLCKSRRVEDAAQLMDQMIMEGL-KPD----KFTYNSLLTYYCRAGD--------------------IKRAAD 391 (587)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~A~~ 391 (587)
.+..++..+...|++++|...+++++.... .++ ..++..++..+...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 445555555666666666666655554200 011 2255566666666666 777777
Q ss_pred HHHHHHHC----CCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----hHhHHHHHHHHHhcCCHHHHHH
Q 038622 392 IVQNMTSN----GCEP-DIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIV-LT----PQAYNPVIQALFRRKRTTEAMR 461 (587)
Q Consensus 392 ~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~ 461 (587)
.+++.... +..| ...++..++..+...|++++|...++++.+.... ++ ...+..++.++...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 77665442 1111 1345677788888888888888888887654111 11 1367788888888999999999
Q ss_pred HHHHHHhcCC-CCC----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-CC----CHHHHHHHHHHHHccCCHhHHH
Q 038622 462 LFREMMEKAD-PPD----ALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGF-LP----EFSSFYMLAEGLVSLGKEETLV 531 (587)
Q Consensus 462 ~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~-~p----~~~~~~~l~~~~~~~g~~~~A~ 531 (587)
.++++++... .++ ...+..++..+...|+ +++|...++++++... .+ ...++..++.+|...|++++|.
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD-YEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9888876410 111 4466677888888888 9999999988875310 11 1557788899999999999999
Q ss_pred HHHHHHHhcCCCCCc-------hhhhhhhHHHHHHH
Q 038622 532 ELIDMVMDKAKFSDR-------ETSMVRGFLKIRKF 560 (587)
Q Consensus 532 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 560 (587)
..++++++..+.... ...++.++...|+.
T Consensus 328 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 328 HFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 999998876543322 34444445555543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-15 Score=134.10 Aligned_cols=207 Identities=11% Similarity=-0.001 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 038622 335 SVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGG 414 (587)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 414 (587)
...+..++..+...|++++|...+++++... +.+...+..++.++...|++++|...++++.+.... +...+..++.+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 4556667777777888888888888877753 335667777777888888888888888887775332 56677778888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHH
Q 038622 415 LCKAGRVEVASKLLRSIQMKGIVL-TPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIG 493 (587)
Q Consensus 415 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 493 (587)
+...|++++|.++++++...+..| +...+..++.++...|++++|...++++++.. +.+...+..++..+...|+ ++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~-~~ 192 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKERE-YV 192 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTC-HH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCC-HH
Confidence 888888888888888887722223 34677788888888888999998888888864 5567778888888888888 89
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc
Q 038622 494 EAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 494 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
+|...++++++.. +.+...+..++.++...|++++|.+.++++.+..|.+..
T Consensus 193 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 193 PARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp HHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence 9999998888742 336778888888888899999999999998888887643
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=3.7e-16 Score=138.06 Aligned_cols=206 Identities=15% Similarity=0.124 Sum_probs=148.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHH
Q 038622 334 NSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIG 413 (587)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 413 (587)
....+..++..+...|++++|...+++++... +.+...+..++.++...|++++|...++++...... +...+..++.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHH
Confidence 34556666777777888888888888877642 335667777778888888888888888887775332 5667778888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHH
Q 038622 414 GLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIG 493 (587)
Q Consensus 414 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 493 (587)
++...|++++|.++++++.+..+. +...+..++..+...|++++|+..++++++.. +.+...+..++..+...|+ ++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~-~~ 176 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGM-LD 176 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC-CH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCC-HH
Confidence 888888888888888888876433 56778888888888999999999999888864 6677778888888888888 89
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 494 EAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 494 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
+|+..++++++.. +.+..++..++.+|...|++++|...++++++..|...
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 227 (243)
T 2q7f_A 177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHM 227 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchH
Confidence 9999999988743 33688888899999999999999999999999888764
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.6e-15 Score=129.25 Aligned_cols=207 Identities=11% Similarity=0.027 Sum_probs=135.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHH
Q 038622 334 NSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIG 413 (587)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 413 (587)
+...+..++..+...|++++|...+++++... +.+...+..++.++...|++++|...++++...... +...+..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 44555666666666666666666666666642 224556666666666677777777777666654322 4556666677
Q ss_pred HHHhc-CChHHHHHHHHHHHHcCCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCC
Q 038622 414 GLCKA-GRVEVASKLLRSIQMKGIVL-TPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGP 491 (587)
Q Consensus 414 ~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 491 (587)
++... |++++|...++++.+.+..| +...+..++.++...|++++|+..++++++.. +.+...+..++..+...|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~- 162 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ- 162 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC-
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC-
Confidence 77777 77777777777776621122 24566677777777777777777777777753 4556666677777777777
Q ss_pred HHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 492 IGEAVDFVIEMLERGFL-PEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 492 ~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
+++|...++++++.. + .+...+..++.++...|+.++|..+++.+.+..|.+.
T Consensus 163 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 216 (225)
T 2vq2_A 163 LGDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSE 216 (225)
T ss_dssp HHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH
Confidence 777777777777643 3 3566666666777777777777777777777776653
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-15 Score=135.83 Aligned_cols=207 Identities=12% Similarity=-0.016 Sum_probs=178.9
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 038622 370 KFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQA 449 (587)
Q Consensus 370 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 449 (587)
...+..++..+...|++++|...++++...... +...+..++.++...|++++|.+.++++.+..+. +...+..++..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 456788888999999999999999999886433 6778899999999999999999999999987543 67889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHh
Q 038622 450 LFRRKRTTEAMRLFREMMEKAD-PPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEE 528 (587)
Q Consensus 450 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 528 (587)
+...|++++|+++++++++.+. +.+...+..++..+...|+ +++|...++++++.. +.+..++..++.++...|+++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKK-PAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999998322 3456677888889999999 999999999999853 337889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCC-chhhhhhhHHHHHHHHHHHHhcchhhhccCchhhh
Q 038622 529 TLVELIDMVMDKAKFSD-RETSMVRGFLKIRKFQDALATFGDILDSRMPRKTF 580 (587)
Q Consensus 529 ~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 580 (587)
+|...++++++..|... .+..++.++...|++++|...++++.+..+.....
T Consensus 193 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 193 PARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245 (252)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHH
Confidence 99999999999888763 47788888999999999999999999988665443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-15 Score=126.93 Aligned_cols=170 Identities=13% Similarity=0.084 Sum_probs=117.2
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 038622 369 DKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQ 448 (587)
Q Consensus 369 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 448 (587)
+...|..++.++...|++++|+..|+++++.++. +...+..++.++...|++++|...++++....+. +...+..++.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 4556666777777777777777777777665433 4566667777777777777777777777665333 4566666777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCH
Q 038622 449 ALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKE 527 (587)
Q Consensus 449 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 527 (587)
.+...++++.|...+.++.... |.+...+..++..+...|+ +++|++.++++++. .| ++.++..++.+|.+.|++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGE-HDKAIEAYEKTISI--KPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCC-chhHHHHHHHHHHh--cchhhhHHHHHHHHHHHCCCH
Confidence 7777777777777777777653 5566666677777777777 77777777777763 35 567777777777777777
Q ss_pred hHHHHHHHHHHhcCCCC
Q 038622 528 ETLVELIDMVMDKAKFS 544 (587)
Q Consensus 528 ~~A~~~~~~~~~~~~~~ 544 (587)
++|+..++++++.+|.+
T Consensus 158 ~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 158 DEAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHhCCccC
Confidence 77777777777776643
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.71 E-value=5.2e-16 Score=130.38 Aligned_cols=169 Identities=10% Similarity=0.044 Sum_probs=153.7
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038622 404 DIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFR 483 (587)
Q Consensus 404 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 483 (587)
+..+|..++..|...|++++|++.|+++++.++. +..++..++.++...|++++|+..+.++.... +.+...+..++.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 5678999999999999999999999999997654 67899999999999999999999999999874 667778888888
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHHHHH
Q 038622 484 GLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFLKIRKFQ 561 (587)
Q Consensus 484 ~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 561 (587)
.+...++ ++.|...+.++++. .| +..++..++.+|.+.|++++|++.++++++.+|.. ..+..++.+|.+.|+++
T Consensus 82 ~~~~~~~-~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDE-KQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCC-HHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 8899999 99999999999984 45 78999999999999999999999999999999987 45899999999999999
Q ss_pred HHHHhcchhhhccCch
Q 038622 562 DALATFGDILDSRMPR 577 (587)
Q Consensus 562 ~A~~~~~~~~~~~~~~ 577 (587)
+|+..|+++++..|+.
T Consensus 159 ~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHhCCccC
Confidence 9999999999987554
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-15 Score=135.10 Aligned_cols=214 Identities=15% Similarity=0.095 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 038622 301 VTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYY 380 (587)
Q Consensus 301 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 380 (587)
..+..++..+...|++++|...|+++.... +.+...+..++..+...|++++|...+++++... +.+...+..++..+
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 344455555556666666666666655543 3445555566666666666666666666666542 22455566666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHH
Q 038622 381 CRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAM 460 (587)
Q Consensus 381 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 460 (587)
...|++++|...++++.+.... +...+..++.++...|++++|...++++.+..+. +...+..++..+...|++++|+
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHHH
Confidence 6666666666666666654322 4555666666777777777777777776665332 4566677777777777777777
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 038622 461 RLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLV 522 (587)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 522 (587)
..++++++.. +.+...+..++..+...|+ +++|...++++++. .| ++.++..++.+..
T Consensus 180 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~--~p~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 180 SQFAAVTEQD-PGHADAFYNAGVTYAYKEN-REKALEMLDKAIDI--QPDHMLALHAKKLLGH 238 (243)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-TTHHHHHHHHHHHH--CTTCHHHHHHHTC---
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHccC-HHHHHHHHHHHHcc--CcchHHHHHHHHHHHh
Confidence 7777777653 5556666677777777777 77777777777763 34 5555555544433
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.4e-16 Score=148.93 Aligned_cols=272 Identities=13% Similarity=0.101 Sum_probs=167.3
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHc----C-CCCCHHHHHH
Q 038622 270 MLIDSLCSRGMLEEALKLLKEMESSGCARNV----VTYNTLIDGFCKLKRIEEAEEIFDEMEIQ----G-ISRNSVTYNT 340 (587)
Q Consensus 270 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~ 340 (587)
.++..+...|++++|+..|+++.+.. +.+. .++..++.++...|++++|...++++... + .+.....+..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 33444444455555555554444432 1121 23444444455555555555555444322 0 0112334455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHhhHHHHHHHHHhcCC-----------------HHHHHHHHHHHHH
Q 038622 341 LIDGLCKSRRVEDAAQLMDQMIME----GLK-PDKFTYNSLLTYYCRAGD-----------------IKRAADIVQNMTS 398 (587)
Q Consensus 341 l~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~~~~~ 398 (587)
++..+...|++++|...+++++.. +.. ....++..++..+...|+ +++|...+++...
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 555555566666666665555442 001 112345556666666666 6777766666544
Q ss_pred C----CC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----hHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038622 399 N----GC-EPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIV-LT----PQAYNPVIQALFRRKRTTEAMRLFREMME 468 (587)
Q Consensus 399 ~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (587)
. +. ......+..++..+...|++++|...++++.+.... .+ ...+..++.++...|++++|+..++++++
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2 11 112346777888888888888888888887764111 01 13678889999999999999999998887
Q ss_pred cCC-CC----CHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 038622 469 KAD-PP----DALTYKHVFRGLCNGGGPIGEAVDFVIEMLERG----FLP-EFSSFYMLAEGLVSLGKEETLVELIDMVM 538 (587)
Q Consensus 469 ~~~-~~----~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 538 (587)
... .. ....+..++..+...|+ +++|..+++++++.. ..+ ...++..++.+|...|++++|...+++++
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHE-FNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 410 11 14567778888899999 999999999988531 011 24577889999999999999999999999
Q ss_pred hcCCC
Q 038622 539 DKAKF 543 (587)
Q Consensus 539 ~~~~~ 543 (587)
+..+.
T Consensus 371 ~~~~~ 375 (411)
T 4a1s_A 371 QLAXX 375 (411)
T ss_dssp HHCCH
T ss_pred HHHhh
Confidence 88764
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.5e-16 Score=149.13 Aligned_cols=213 Identities=9% Similarity=-0.051 Sum_probs=145.5
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 038622 351 VEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDI-KRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLR 429 (587)
Q Consensus 351 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 429 (587)
+++++..+++.... .+.+...+..++.++...|++ ++|+..|+++++..+. +...+..++.+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44555555554443 223555666666667777777 7777777776664332 45566777777777777777777777
Q ss_pred HHHHcCCCCChHhHHHHHHHHHhc---------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhC--------CCCH
Q 038622 430 SIQMKGIVLTPQAYNPVIQALFRR---------KRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNG--------GGPI 492 (587)
Q Consensus 430 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~ 492 (587)
++.+. .|+...+..++.++... |++++|+..|+++++.. |.+...+..++.++... |+ +
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~-~ 237 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKI-S 237 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHH-H
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccch-H
Confidence 77764 34456667777777777 77777777777777764 55666777777777666 66 7
Q ss_pred HHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC-chhhhhhhHHHHHHHHHHHHhc
Q 038622 493 GEAVDFVIEMLERGFLP----EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD-RETSMVRGFLKIRKFQDALATF 567 (587)
Q Consensus 493 ~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~ 567 (587)
++|+..|+++++. .| ++.++..++.+|...|++++|+..++++++.+|... .+..++.++...|++++|+..+
T Consensus 238 ~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 238 QQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777777777774 34 577777777778778888888888888777777663 4677777777777777777776
Q ss_pred chhh
Q 038622 568 GDIL 571 (587)
Q Consensus 568 ~~~~ 571 (587)
+++.
T Consensus 316 ~~~~ 319 (474)
T 4abn_A 316 GKTK 319 (474)
T ss_dssp TTCC
T ss_pred cccc
Confidence 6653
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.71 E-value=9.6e-17 Score=154.20 Aligned_cols=277 Identities=13% Similarity=0.019 Sum_probs=217.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHh
Q 038622 301 VTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNS----VTYNTLIDGLCKSRRVEDAAQLMDQMIME----GL-KPDKF 371 (587)
Q Consensus 301 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~~~~~ 371 (587)
..+..++..+...|++++|+..|+++.... +.+. ..+..++..+...|++++|...+++++.. +. .....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 445567888999999999999999998875 3343 47888899999999999999999998763 11 12345
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCcchHHHHHHHHHhcCC-----------------hHHHHHHHH
Q 038622 372 TYNSLLTYYCRAGDIKRAADIVQNMTSN----G-CEPDIVTYGTLIGGLCKAGR-----------------VEVASKLLR 429 (587)
Q Consensus 372 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~ 429 (587)
.+..++..+...|++++|...++++... + .......+..++..|...|+ +++|.+.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 6788899999999999999999988763 1 11124477888999999999 999999998
Q ss_pred HHHHc----CCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHhCCCCHHHHHHHH
Q 038622 430 SIQMK----GIVL-TPQAYNPVIQALFRRKRTTEAMRLFREMMEKAD-PPD----ALTYKHVFRGLCNGGGPIGEAVDFV 499 (587)
Q Consensus 430 ~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~~A~~~~ 499 (587)
+..+. +..+ ....+..++..+...|++++|+..++++++... .++ ...+..++..+...|+ +++|+..+
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~ 286 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQ-FEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTC-HHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcC-HHHHHHHH
Confidence 87653 1111 235788899999999999999999999987410 112 2367788888999999 99999999
Q ss_pred HHHHHcC--CCC---CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-------CchhhhhhhHHHHHHHHHHHHhc
Q 038622 500 IEMLERG--FLP---EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-------DRETSMVRGFLKIRKFQDALATF 567 (587)
Q Consensus 500 ~~~~~~~--~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~A~~~~ 567 (587)
+++++.. ... ...++..++.+|...|++++|...++++++..+.. ..+..++.+|...|++++|+..|
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 9998631 011 25678899999999999999999999998765442 14678889999999999999999
Q ss_pred chhhhccCchhh
Q 038622 568 GDILDSRMPRKT 579 (587)
Q Consensus 568 ~~~~~~~~~~~~ 579 (587)
+++++....-+.
T Consensus 367 ~~al~~~~~~~~ 378 (411)
T 4a1s_A 367 EQHLQLAXXXXX 378 (411)
T ss_dssp HHHHHHCCHHHH
T ss_pred HHHHHHHhhccc
Confidence 999887755443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=7.1e-16 Score=139.12 Aligned_cols=249 Identities=13% Similarity=-0.026 Sum_probs=184.7
Q ss_pred HHHcCChhhHHHHHHhhccCCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 038622 30 LCKAHQIRPAILMMEEMPGYGL---APDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRI 106 (587)
Q Consensus 30 ~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 106 (587)
+...|++++|+..|+.+.+... +.++.++..++..+...|++++|+..|+++.+.+ |.+..++..++.++...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence 3456788899999988887531 2246678888888999999999999999998875 55778888889999999999
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 038622 107 EDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQM 186 (587)
Q Consensus 107 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 186 (587)
++|+..++++++.. +.+..++..++.++...|++++|...++++.+. .|+.......+..+...|++++|...+++.
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999988863 456778888889999999999999999998875 344444444555566778999999999887
Q ss_pred HhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC---CHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038622 187 ILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILP---DVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQP 263 (587)
Q Consensus 187 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 263 (587)
.... +++... ..++..+...++.++|...++......... +...+..++.++...|++++|...|+++.... |
T Consensus 171 ~~~~-~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p 246 (275)
T 1xnf_A 171 FEKS-DKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--V 246 (275)
T ss_dssp HHHS-CCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--C
T ss_pred HhcC-CcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--c
Confidence 7664 334333 346777788888888888888876542110 14677888889999999999999999988763 3
Q ss_pred CHHhHHHHHHHHHccCChHHHHHHH
Q 038622 264 DEFTYNMLIDSLCSRGMLEEALKLL 288 (587)
Q Consensus 264 ~~~~~~~l~~~~~~~~~~~~a~~~~ 288 (587)
+. +.....++...|++++|++.+
T Consensus 247 ~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 247 HN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TT--CHHHHHHHHHHHHHHHC----
T ss_pred hh--HHHHHHHHHHHHHHHhhHHHH
Confidence 22 222355666778888887766
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.9e-16 Score=147.22 Aligned_cols=296 Identities=14% Similarity=0.083 Sum_probs=182.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHhHHHHHHHHHccCChHHHHHHHHHHHHC----CC-CCCHHH
Q 038622 232 TFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPD----EFTYNMLIDSLCSRGMLEEALKLLKEMESS----GC-ARNVVT 302 (587)
Q Consensus 232 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~ 302 (587)
.+...+..+...|++++|...|+++.+.. +.+ ..++..++..+...|++++|+..++++... +. +....+
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 34444445555555555555555555442 222 234445555555555555555555554322 10 111234
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhcCC--------------------HHHHHHH
Q 038622 303 YNTLIDGFCKLKRIEEAEEIFDEMEIQGI-----SRNSVTYNTLIDGLCKSRR--------------------VEDAAQL 357 (587)
Q Consensus 303 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~--------------------~~~A~~~ 357 (587)
+..++.++...|++++|...++++..... +....++..++..+...|+ +++|...
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 45555556666666666666655443210 0012355566666666677 7777777
Q ss_pred HHHHHHc----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----cchHHHHHHHHHhcCChHHHHHH
Q 038622 358 MDQMIME----GLKP-DKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCE-PD----IVTYGTLIGGLCKAGRVEVASKL 427 (587)
Q Consensus 358 ~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~ 427 (587)
+++++.. +..| ...++..++..+...|++++|...++++.+.... ++ ...+..++.++...|++++|...
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 249 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 7766542 1111 1235677778888888888888888887653111 11 23677888889999999999999
Q ss_pred HHHHHHcCCC-CC----hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHhCCCCHHHHHH
Q 038622 428 LRSIQMKGIV-LT----PQAYNPVIQALFRRKRTTEAMRLFREMMEKAD-PPD----ALTYKHVFRGLCNGGGPIGEAVD 497 (587)
Q Consensus 428 ~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~~A~~ 497 (587)
++++...... .+ ..++..++..+...|++++|...++++++... .++ ...+..++..+...|+ +++|..
T Consensus 250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~ 328 (406)
T 3sf4_A 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN-HDQAMH 328 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHH
T ss_pred HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC-HHHHHH
Confidence 9888754111 01 35678889999999999999999999887410 112 4567778888899999 999999
Q ss_pred HHHHHHHc----CCCC-CHHHHHHHHHHHHccCCHhH
Q 038622 498 FVIEMLER----GFLP-EFSSFYMLAEGLVSLGKEET 529 (587)
Q Consensus 498 ~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~ 529 (587)
.++++++. +..+ ...++..++.++...|+...
T Consensus 329 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 329 FAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 99998853 1112 35677788899988887643
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=4e-16 Score=145.45 Aligned_cols=96 Identities=14% Similarity=0.155 Sum_probs=53.3
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHc----C-CCCCHHH
Q 038622 267 TYNMLIDSLCSRGMLEEALKLLKEMESSGCARN----VVTYNTLIDGFCKLKRIEEAEEIFDEMEIQ----G-ISRNSVT 337 (587)
Q Consensus 267 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~ 337 (587)
.+...+..+...|++++|+..++++.+.. +.+ ...+..++..+...|++++|...++++... + .+.....
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34445566666666677766666666553 222 234555666666666666666666655332 1 0112334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038622 338 YNTLIDGLCKSRRVEDAAQLMDQMIM 363 (587)
Q Consensus 338 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 363 (587)
+..++..+...|++++|...+++++.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~ 111 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLD 111 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55555556666666666666665544
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.3e-14 Score=123.81 Aligned_cols=199 Identities=10% Similarity=0.048 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 038622 301 VTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYY 380 (587)
Q Consensus 301 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 380 (587)
..+..++..+...|++++|...++++.... +.+...+..++..+...|++++|...++++.... +.+...+..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 344444555555555555555555544433 3334445555555555555555555555555432 22344455555555
Q ss_pred Hhc-CCHHHHHHHHHHHHHCCCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHH
Q 038622 381 CRA-GDIKRAADIVQNMTSNGCEP-DIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTE 458 (587)
Q Consensus 381 ~~~-~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 458 (587)
... |++++|...++++.+.+..| +...+..++.++...|++++|...++++.+..+. +...+..++.++...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHHH
Confidence 555 55555555555555421111 1344555555556666666666666655554322 34555566666666666666
Q ss_pred HHHHHHHHHhcCCC-CCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 038622 459 AMRLFREMMEKADP-PDALTYKHVFRGLCNGGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 459 A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 504 (587)
|...++++++.. + .+...+..+...+...|+ .++|..+++.+.+
T Consensus 166 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 166 ADYYFKKYQSRV-EVLQADDLLLGWKIAKALGN-AQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHHH
Confidence 666666665543 3 444444444444455555 6666666666554
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-15 Score=141.71 Aligned_cols=279 Identities=13% Similarity=0.086 Sum_probs=155.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHhHHHHHHHHHccCChHHHHHHHHHHHHC----C-CCCCHHH
Q 038622 232 TFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPD----EFTYNMLIDSLCSRGMLEEALKLLKEMESS----G-CARNVVT 302 (587)
Q Consensus 232 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~ 302 (587)
.+......+...|++++|...|+++.+.. +.+ ...+..++..+...|++++|+..++++... + .+....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34455667777788888888888877763 233 356667777778888888888887776543 1 1122445
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCC--------------------HHHHHHH
Q 038622 303 YNTLIDGFCKLKRIEEAEEIFDEMEIQGIS-RN----SVTYNTLIDGLCKSRR--------------------VEDAAQL 357 (587)
Q Consensus 303 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~ 357 (587)
+..++..+...|++++|...+++....... ++ ..++..++..+...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 667777777888888888887776543100 11 1244445555555555 3444433
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 038622 358 MDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIV 437 (587)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 437 (587)
+++++.. ..... ........+..++..+...|++++|...++++.+....
T Consensus 166 ~~~a~~~----------------------------~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 166 YEENLSL----------------------------VTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHHHHH----------------------------HHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----------------------------HHhcC--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 3333221 00000 00001223445555555556666666665555432100
Q ss_pred -CC----hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-
Q 038622 438 -LT----PQAYNPVIQALFRRKRTTEAMRLFREMMEKAD-PPD----ALTYKHVFRGLCNGGGPIGEAVDFVIEMLERG- 506 (587)
Q Consensus 438 -~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~- 506 (587)
++ ...+..++..+...|++++|...++++++... .++ ...+..++..+...|+ +++|...++++++..
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD-YEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHH
Confidence 01 12556666666777777777777766665310 111 3345556666667777 777777777766421
Q ss_pred ---CCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCC
Q 038622 507 ---FLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAK 542 (587)
Q Consensus 507 ---~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 542 (587)
-.+ ...++..++.+|...|++++|...++++++..+
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 001 134556677777777777777777777776554
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.67 E-value=8.4e-14 Score=127.31 Aligned_cols=222 Identities=9% Similarity=0.059 Sum_probs=171.5
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHHcCCCC-CHhhHHHHHHHHH
Q 038622 317 EEAEEIFDEMEIQGISRNSVTYNTLIDGLC-------KSRRV-------EDAAQLMDQMIMEGLKP-DKFTYNSLLTYYC 381 (587)
Q Consensus 317 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 381 (587)
++|..+|+++.... |.++..|..++..+. ..|++ ++|..+|++++.. +.| +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHH
Confidence 56777777777654 567777777776665 34775 8899999998873 233 4557888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC-cc-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH-hcCCHHH
Q 038622 382 RAGDIKRAADIVQNMTSNGCEPD-IV-TYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALF-RRKRTTE 458 (587)
Q Consensus 382 ~~~~~~~A~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 458 (587)
..|++++|..+|+++++. .|+ .. .|..++..+.+.|++++|..+|+++.+..+. +...|...+.... ..|++++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHHH
Confidence 889999999999998874 343 33 7888888888899999999999999886432 4455554444432 3699999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHccCCHhHHHHHHH
Q 038622 459 AMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERG-FLP--EFSSFYMLAEGLVSLGKEETLVELID 535 (587)
Q Consensus 459 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~ 535 (587)
|..+|+++++.. |.+...|..++..+...|+ +++|+.+|+++++.. ++| ....|..++..+.+.|+.++|..+++
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNE-DNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999998863 6677888888888888888 999999999999852 355 46788888899999999999999999
Q ss_pred HHHhcCCCCC
Q 038622 536 MVMDKAKFSD 545 (587)
Q Consensus 536 ~~~~~~~~~~ 545 (587)
++++..|++.
T Consensus 266 ~a~~~~p~~~ 275 (308)
T 2ond_A 266 RRFTAFREEY 275 (308)
T ss_dssp HHHHHTTTTT
T ss_pred HHHHHccccc
Confidence 9999988753
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.7e-14 Score=130.54 Aligned_cols=220 Identities=12% Similarity=0.038 Sum_probs=179.5
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHH-------hcCCH-------HHHHHHHHHHHHC-CCCCCcchHHHHHHHHH
Q 038622 352 EDAAQLMDQMIMEGLKPDKFTYNSLLTYYC-------RAGDI-------KRAADIVQNMTSN-GCEPDIVTYGTLIGGLC 416 (587)
Q Consensus 352 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 416 (587)
++|...|++++... +.+...|..++..+. ..|++ ++|..+|+++++. .+. +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~-~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 68889999999853 346778888877765 35886 8999999999983 332 5568899999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChH-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-hCCCCHHH
Q 038622 417 KAGRVEVASKLLRSIQMKGIVLTPQ-AYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLC-NGGGPIGE 494 (587)
Q Consensus 417 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~ 494 (587)
..|++++|.++|+++++..+. +.. +|..++..+.+.|++++|..+|+++++.+ |++...+...+.... ..|+ +++
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~-~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKD-KSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCC-HHH
T ss_pred hcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCC-HHH
Confidence 999999999999999985332 344 89999999999999999999999999874 555555554443322 2688 999
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhc---CCC-C-CchhhhhhhHHHHHHHHHHHHhcc
Q 038622 495 AVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDK---AKF-S-DRETSMVRGFLKIRKFQDALATFG 568 (587)
Q Consensus 495 A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~-~-~~~~~~~~~~~~~~~~~~A~~~~~ 568 (587)
|..+|+++++. .| ++.++..++..+.+.|++++|+.+|+++++. +|. . ..|..++..+.+.|+.++|...++
T Consensus 188 A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 188 AFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999984 45 7899999999999999999999999999996 332 2 357888888999999999999999
Q ss_pred hhhhccCchh
Q 038622 569 DILDSRMPRK 578 (587)
Q Consensus 569 ~~~~~~~~~~ 578 (587)
++++..|...
T Consensus 266 ~a~~~~p~~~ 275 (308)
T 2ond_A 266 RRFTAFREEY 275 (308)
T ss_dssp HHHHHTTTTT
T ss_pred HHHHHccccc
Confidence 9999887543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.9e-15 Score=141.19 Aligned_cols=232 Identities=12% Similarity=0.030 Sum_probs=109.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC-CCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-----CcchHHH
Q 038622 342 IDGLCKSRRVEDAAQLMDQMIMEG-LKPD----KFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCE-P-----DIVTYGT 410 (587)
Q Consensus 342 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~-----~~~~~~~ 410 (587)
+..+...|++++|...++++.... ..++ ..++..++.++...|+++.|...++++.+.... + ...++..
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 334445555555555555554320 0011 224445555555555555555555554432000 0 1224455
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCC-CC----hHhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC-CCCHHHHHH
Q 038622 411 LIGGLCKAGRVEVASKLLRSIQMKGIV-LT----PQAYNPVIQALFRRKRTTEAMRLFREMMEK----AD-PPDALTYKH 480 (587)
Q Consensus 411 l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~ 480 (587)
++.+|...|++++|...++++.+.... ++ ..++..++.++...|++++|+..++++++. +. +....++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 555555556666665555555442100 01 124555566666666666666666655551 11 222344555
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCC---CC-CHHHHHHHHHHHHccCC---HhHHHHHHHHHHhcCCCCCchhhhhhh
Q 038622 481 VFRGLCNGGGPIGEAVDFVIEMLERGF---LP-EFSSFYMLAEGLVSLGK---EETLVELIDMVMDKAKFSDRETSMVRG 553 (587)
Q Consensus 481 l~~~~~~~~~~~~~A~~~~~~~~~~~~---~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~ 553 (587)
++..+...|+ +++|...++++++..- .| ....+..++.++...|+ +++|+..+++........+....++.+
T Consensus 270 l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 270 ITQIHYKLGK-IDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 5555555565 6666666665553200 11 11223445555556665 455555554431111111234455555
Q ss_pred HHHHHHHHHHHHhcchhhhcc
Q 038622 554 FLKIRKFQDALATFGDILDSR 574 (587)
Q Consensus 554 ~~~~~~~~~A~~~~~~~~~~~ 574 (587)
|...|++++|...|+++++..
T Consensus 349 y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHH
Confidence 666666666666666555543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.5e-14 Score=133.84 Aligned_cols=235 Identities=11% Similarity=-0.062 Sum_probs=168.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC-----CHhhHH
Q 038622 306 LIDGFCKLKRIEEAEEIFDEMEIQ----GISR-NSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGL-KP-----DKFTYN 374 (587)
Q Consensus 306 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~-----~~~~~~ 374 (587)
.+..+...|++++|...++++... +.++ ...++..++..+...|+++.|...+.+++.... .+ ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 566777788888888888887653 1111 345677788888888888888888888876311 11 134677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----cchHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CCChHhHH
Q 038622 375 SLLTYYCRAGDIKRAADIVQNMTSNGCE-PD----IVTYGTLIGGLCKAGRVEVASKLLRSIQMK----GI-VLTPQAYN 444 (587)
Q Consensus 375 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 444 (587)
.++.++...|++++|...++++++.... ++ ..++..++.+|...|++++|...++++.+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8888899999999999999888763111 11 237888999999999999999999998873 22 22356788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 038622 445 PVIQALFRRKRTTEAMRLFREMMEK----ADPPDALTYKHVFRGLCNGGGP--IGEAVDFVIEMLERGFLP-EFSSFYML 517 (587)
Q Consensus 445 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~--~~~A~~~~~~~~~~~~~p-~~~~~~~l 517 (587)
.++.++...|++++|...++++++. +.+.....+..+...+...|+. +++|+.++++. +..| ...++..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 9999999999999999999999874 1111122345566666666651 44455555544 2233 45677889
Q ss_pred HHHHHccCCHhHHHHHHHHHHhcCCC
Q 038622 518 AEGLVSLGKEETLVELIDMVMDKAKF 543 (587)
Q Consensus 518 ~~~~~~~g~~~~A~~~~~~~~~~~~~ 543 (587)
+.+|...|++++|...++++++....
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999876543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.65 E-value=7.6e-15 Score=142.44 Aligned_cols=212 Identities=12% Similarity=0.027 Sum_probs=166.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 038622 316 IEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRV-EDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQ 394 (587)
Q Consensus 316 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 394 (587)
+++++..++...... +.+...+..++..+...|++ ++|+..|+++++.. +.+...+..++.++...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455666666554432 45667777777788888888 88888888887753 2246677788888888888888888888
Q ss_pred HHHHCCCCCCcchHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc--------CCHH
Q 038622 395 NMTSNGCEPDIVTYGTLIGGLCKA---------GRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRR--------KRTT 457 (587)
Q Consensus 395 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 457 (587)
++++. .|+...+..++.++... |++++|...++++.+..+. +...|..++.++... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence 88775 35567777788888888 8889999999888886543 567888888888888 8899
Q ss_pred HHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHH
Q 038622 458 EAMRLFREMMEKADP---PDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVEL 533 (587)
Q Consensus 458 ~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 533 (587)
+|+..|+++++.+ | .+...+..++.++...|+ +++|++.++++++. .| +..++..++.++...|++++|+..
T Consensus 239 ~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 239 QALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEES-YGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999864 4 578888889989999998 99999999999984 46 688888999999999999998876
Q ss_pred HHH
Q 038622 534 IDM 536 (587)
Q Consensus 534 ~~~ 536 (587)
+.+
T Consensus 315 ~~~ 317 (474)
T 4abn_A 315 KGK 317 (474)
T ss_dssp TTT
T ss_pred hcc
Confidence 544
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.5e-14 Score=123.08 Aligned_cols=201 Identities=14% Similarity=0.051 Sum_probs=154.6
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHH
Q 038622 368 PDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVI 447 (587)
Q Consensus 368 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 447 (587)
.|+..+...+..+...|++++|+..|+++++....++...+..++.++...|++++|+..++++.+..+. +...+..++
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3567788888889999999999999999888654356777777889999999999999999999886433 557888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC---HHHHHHH
Q 038622 448 QALFRRKRTTEAMRLFREMMEKADPPDA-------LTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPE---FSSFYML 517 (587)
Q Consensus 448 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~---~~~~~~l 517 (587)
.++...|++++|+..++++++.. |.+. ..+..++..+...|+ +++|++.++++++. .|+ ..++..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGN-IEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhcc-HHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 99999999999999999999864 5555 457777888888888 99999999999874 454 5778888
Q ss_pred HHHHHccCCHhHHHHHHHHHHhcCCCCCchhhhhhhHHHHHHHHHHHHhcchhhhccCchhh
Q 038622 518 AEGLVSLGKEETLVELIDMVMDKAKFSDRETSMVRGFLKIRKFQDALATFGDILDSRMPRKT 579 (587)
Q Consensus 518 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 579 (587)
+.+|...| ...++++....+... ...........+.+++|+..|+++++..|....
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~ 215 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLASSNK-EKYASEKAKADAAFKKAVDYLGEAVTLSPNRTE 215 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGTTTCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHH-----HHHHHHHHhcccCCH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHH
Confidence 88886554 344566666554432 122233355678889999999999998866544
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.5e-15 Score=135.96 Aligned_cols=239 Identities=16% Similarity=0.120 Sum_probs=126.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC
Q 038622 302 TYNTLIDGFCKLKRIEEAEEIFDEMEIQ-------GISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIME------GLKP 368 (587)
Q Consensus 302 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~ 368 (587)
++..++..+...|++++|..+++++... ..+.....+..++..+...|++++|...+++++.. +..|
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 3444444444445555555444444331 11222334444555555555555555555555432 1111
Q ss_pred -CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHc------
Q 038622 369 -DKFTYNSLLTYYCRAGDIKRAADIVQNMTSN------GCEP-DIVTYGTLIGGLCKAGRVEVASKLLRSIQMK------ 434 (587)
Q Consensus 369 -~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------ 434 (587)
....+..++..+...|++++|...++++.+. +..| ....+..++..+...|++++|..+++++...
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 2334555556666666666666666655542 1111 2345666677777777777777777776653
Q ss_pred CCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCCHHH-------HHHHHHHHHhCCCCHHHHHHHH
Q 038622 435 GIVL-TPQAYNPVIQALFRRKRTTEAMRLFREMMEK-------ADPPDALT-------YKHVFRGLCNGGGPIGEAVDFV 499 (587)
Q Consensus 435 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~-------~~~l~~~~~~~~~~~~~A~~~~ 499 (587)
+..| ....+..++.++...|++++|...++++++. ...+.... +......+...+. +.+|...+
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~ 267 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTS-FGEYGGWY 267 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CC-SCCCC---
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHH-HHHHHHHH
Confidence 1111 2346677778888888888888888887752 11111111 1122222333444 66667777
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCC
Q 038622 500 IEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKF 543 (587)
Q Consensus 500 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 543 (587)
+++... .| ...++..++.+|.+.|++++|...++++++..|.
T Consensus 268 ~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 268 KACKVD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hhcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 777652 34 5778888999999999999999999998887653
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.8e-14 Score=145.03 Aligned_cols=170 Identities=15% Similarity=0.088 Sum_probs=149.6
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 038622 369 DKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQ 448 (587)
Q Consensus 369 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 448 (587)
+...++.++.++...|++++|+..|+++++..+. +...+..++.+|.+.|++++|++.|+++++.++. +..+|..++.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 4568899999999999999999999999986443 5778899999999999999999999999986544 5789999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCH
Q 038622 449 ALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKE 527 (587)
Q Consensus 449 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 527 (587)
++...|++++|++.|+++++.+ |.+...+..++.++...|+ +++|++.|+++++ +.| +..++..++.+|...|++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~-~~eAi~~~~~Al~--l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGN-IPEAIASYRTALK--LKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH--hCCCChHHHhhhhhHHHhcccH
Confidence 9999999999999999999975 6678889999999999999 9999999999998 457 688999999999999999
Q ss_pred hHHHHHHHHHHhcCCCC
Q 038622 528 ETLVELIDMVMDKAKFS 544 (587)
Q Consensus 528 ~~A~~~~~~~~~~~~~~ 544 (587)
++|.+.++++++..++.
T Consensus 162 ~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 162 TDYDERMKKLVSIVADQ 178 (723)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhH
Confidence 99999999998877653
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-13 Score=119.31 Aligned_cols=203 Identities=7% Similarity=-0.082 Sum_probs=162.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHH
Q 038622 332 SRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTL 411 (587)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 411 (587)
+.++..+...+..+...|++++|+..|++++.....++...+..++.++...|++++|+..++++++.++. +...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHH
Confidence 35678889999999999999999999999999754367788888999999999999999999999986443 56788999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCh-------HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHH
Q 038622 412 IGGLCKAGRVEVASKLLRSIQMKGIVLTP-------QAYNPVIQALFRRKRTTEAMRLFREMMEKADPP--DALTYKHVF 482 (587)
Q Consensus 412 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~ 482 (587)
+.++...|++++|...++++.+..+. +. ..|..++..+...|++++|+..|+++++.+ |. +...+..++
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHH
Confidence 99999999999999999999986443 44 458889999999999999999999999863 44 456677777
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc
Q 038622 483 RGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 483 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
.++.. .+...++++...+ ..+...+... .....|.+++|+..++++++..|.+..
T Consensus 161 ~~~~~------~~~~~~~~a~~~~-~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~~~~ 215 (228)
T 4i17_A 161 VLFYN------NGADVLRKATPLA-SSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPNRTE 215 (228)
T ss_dssp HHHHH------HHHHHHHHHGGGT-TTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHH------HHHHHHHHHHhcc-cCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCCHH
Confidence 77644 4445566666542 2344444333 344567799999999999999998743
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=7.9e-14 Score=140.47 Aligned_cols=168 Identities=11% Similarity=0.020 Sum_probs=147.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHH
Q 038622 332 SRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTL 411 (587)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 411 (587)
|.+...++.++.++.+.|++++|+..|+++++.. +-+...+..++.++.+.|++++|+..|+++++.++. +...+..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 4567889999999999999999999999999863 235678899999999999999999999999986443 57789999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCC
Q 038622 412 IGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGP 491 (587)
Q Consensus 412 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 491 (587)
+.++...|++++|++.|+++++.++. +..+++.++.++...|++++|+..|+++++.. |.+...+..++.++...|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~- 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCD- 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhccc-
Confidence 99999999999999999999986544 57899999999999999999999999999975 6678888899999999999
Q ss_pred HHHHHHHHHHHHH
Q 038622 492 IGEAVDFVIEMLE 504 (587)
Q Consensus 492 ~~~A~~~~~~~~~ 504 (587)
+++|.+.++++++
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999886
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.57 E-value=2.6e-13 Score=113.98 Aligned_cols=173 Identities=16% Similarity=0.065 Sum_probs=139.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 038622 371 FTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQAL 450 (587)
Q Consensus 371 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 450 (587)
..+..++..+...|++++|...++++...... +...+..++..+...|++++|...++++.+..+. +...+..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 35566677778888888888888877765332 5667778888888888888888888888876433 567888888889
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHH
Q 038622 451 FRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETL 530 (587)
Q Consensus 451 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 530 (587)
...|++++|...++++.+.. +.+...+..++..+...|+ +++|...++++++.. +.++.++..++.++...|++++|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGR-FDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCc-HHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999988874 6677788888888888898 999999999998753 33788888999999999999999
Q ss_pred HHHHHHHHhcCCCCCchh
Q 038622 531 VELIDMVMDKAKFSDRET 548 (587)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~ 548 (587)
...++++++..|.+....
T Consensus 164 ~~~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 164 LPHFKKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHHcCCCchhhH
Confidence 999999998888765433
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-14 Score=133.24 Aligned_cols=243 Identities=16% Similarity=0.052 Sum_probs=175.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----
Q 038622 332 SRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIME-------GLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSN----- 399 (587)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----- 399 (587)
|.....+..++..+...|++++|..++++++.. ........+..++.++...|++++|...+++++..
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 334567888899999999999999999999873 12223457888899999999999999999988764
Q ss_pred -CCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 038622 400 -GCEP-DIVTYGTLIGGLCKAGRVEVASKLLRSIQMK------GIVL-TPQAYNPVIQALFRRKRTTEAMRLFREMMEK- 469 (587)
Q Consensus 400 -~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 469 (587)
+..| ....+..++..+...|++++|..+++++.+. +..| ....+..++..+...|++++|+.+++++++.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1112 3557888999999999999999999998874 1112 2357888999999999999999999999874
Q ss_pred -----CCCC-CHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-------CCCCC-------HHHHHHHHHHHHccCCHhH
Q 038622 470 -----ADPP-DALTYKHVFRGLCNGGGPIGEAVDFVIEMLER-------GFLPE-------FSSFYMLAEGLVSLGKEET 529 (587)
Q Consensus 470 -----~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~-------~~~p~-------~~~~~~l~~~~~~~g~~~~ 529 (587)
+..| ....+..++..+...|+ +++|...++++++. ...+. ...+..++..+...+.+.+
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGK-FKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGE 262 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 1122 34467788888999999 99999999999863 11221 2233444555667778888
Q ss_pred HHHHHHHHHhcCCCC-CchhhhhhhHHHHHHHHHHHHhcchhhhccC
Q 038622 530 LVELIDMVMDKAKFS-DRETSMVRGFLKIRKFQDALATFGDILDSRM 575 (587)
Q Consensus 530 A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 575 (587)
|...++++....|.. ..+..++.+|.+.|++++|+..|+++++..+
T Consensus 263 a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 263 YGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp CC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 888898888776654 4578899999999999999999999987654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.2e-12 Score=120.72 Aligned_cols=167 Identities=10% Similarity=0.028 Sum_probs=72.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC--C--CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHhHH----
Q 038622 374 NSLLTYYCRAGDIKRAADIVQNMTSNGCE--P--DIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLT-PQAYN---- 444 (587)
Q Consensus 374 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~---- 444 (587)
..++..+...|++++|...+++....... + ....+..++..+...|++++|...+++.......++ ...+.
T Consensus 139 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~ 218 (373)
T 1hz4_A 139 RIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN 218 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHH
Confidence 33444455555555555555554432111 0 112344445555555555555555555443211111 01111
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCCCC-HHHHH
Q 038622 445 -PVIQALFRRKRTTEAMRLFREMMEKADPPD---ALTYKHVFRGLCNGGGPIGEAVDFVIEMLER----GFLPE-FSSFY 515 (587)
Q Consensus 445 -~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~----~~~p~-~~~~~ 515 (587)
..+..+...|++++|...++++......+. ...+..++..+...|+ +++|...++++++. +..++ ..++.
T Consensus 219 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~l~~a~~~~~~~~~~~~~~~~~~ 297 (373)
T 1hz4_A 219 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGE-FEPAEIVLEELNENARSLRLMSDLNRNLL 297 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 122234455555555555555544221110 1123344445555555 55555555555431 10001 12444
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHhcC
Q 038622 516 MLAEGLVSLGKEETLVELIDMVMDKA 541 (587)
Q Consensus 516 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 541 (587)
.++.++...|++++|...+++++...
T Consensus 298 ~la~~~~~~g~~~~A~~~l~~al~~~ 323 (373)
T 1hz4_A 298 LLNQLYWQAGRKSDAQRVLLDALKLA 323 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 45555555566666666555555443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.55 E-value=2e-12 Score=122.18 Aligned_cols=232 Identities=9% Similarity=-0.024 Sum_probs=125.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCC--C---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC-----CHhhH
Q 038622 305 TLIDGFCKLKRIEEAEEIFDEMEIQGI--S---RNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGL-KP-----DKFTY 373 (587)
Q Consensus 305 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~-----~~~~~ 373 (587)
..+..+...|++++|+..++++..... + ....++..++.+|...|+++.|...+++++.... .+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344455566666777666666654310 0 1234555666666667777777777666654210 01 12345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCcchHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCChHhH
Q 038622 374 NSLLTYYCRAGDIKRAADIVQNMTSN----GCE-PDIVTYGTLIGGLCKAGRVEVASKLLRSIQM-----KGIVLTPQAY 443 (587)
Q Consensus 374 ~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 443 (587)
..++.++...|++++|...++++++. +.. ....++..++.+|...|++++|...++++.. ..+. ...++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHH
Confidence 56666677777777777776666542 100 0123456666677777777777777776665 3222 24566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCC---CCCHH-HHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCCC-CHHHHHH
Q 038622 444 NPVIQALFRRKRTTEAMRLFREMMEKAD---PPDAL-TYKHVFRGLCNGGG--PIGEAVDFVIEMLERGFLP-EFSSFYM 516 (587)
Q Consensus 444 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~-~~~~l~~~~~~~~~--~~~~A~~~~~~~~~~~~~p-~~~~~~~ 516 (587)
..++.++...|++++|...++++++... .+... .+..+...+...++ .+.+|+.++++ .+..| ....+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHH
Confidence 6677777777777777777777766311 12222 22222222222222 03344444443 11122 2345556
Q ss_pred HHHHHHccCCHhHHHHHHHHHHhc
Q 038622 517 LAEGLVSLGKEETLVELIDMVMDK 540 (587)
Q Consensus 517 l~~~~~~~g~~~~A~~~~~~~~~~ 540 (587)
++.+|...|++++|...++++++.
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 777777777777777777766543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.6e-12 Score=122.76 Aligned_cols=233 Identities=10% Similarity=-0.020 Sum_probs=153.9
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCC--C---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC--C----CCHH
Q 038622 268 YNMLIDSLCSRGMLEEALKLLKEMESSGC--A---RNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGI--S----RNSV 336 (587)
Q Consensus 268 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~----~~~~ 336 (587)
+...+..+...|++++|+..++++..... + ....++..++.++...|+++.|...+.+...... + ....
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 34455666777888888888877765310 1 1234566777778888888888888777654310 1 1234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCcc
Q 038622 337 TYNTLIDGLCKSRRVEDAAQLMDQMIME----GLKP-DKFTYNSLLTYYCRAGDIKRAADIVQNMTS-----NGCEPDIV 406 (587)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~ 406 (587)
++..++.+|...|++++|...+++++.. +..+ ...++..++.++...|++++|...+++++. ..+. ...
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~ 262 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPK 262 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHH
Confidence 5667777888888888888888877752 1111 123566778888888888888888888776 3222 356
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---CC-hHhHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCHHHHH
Q 038622 407 TYGTLIGGLCKAGRVEVASKLLRSIQMKGIV---LT-PQAYNPVIQALFRRKR---TTEAMRLFREMMEKADPPDALTYK 479 (587)
Q Consensus 407 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~ 479 (587)
++..++.++...|++++|...++++.+.... +. ...+..+...+...++ +.+|+..+++... .+.....+.
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~ 340 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL--HAYIEACAR 340 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC--hhHHHHHHH
Confidence 6777888888888888888888888765211 11 2344556666667777 7777777766321 122234556
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH
Q 038622 480 HVFRGLCNGGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 480 ~l~~~~~~~~~~~~~A~~~~~~~~~ 504 (587)
.++..+...|+ +++|..+++++++
T Consensus 341 ~la~~y~~~g~-~~~A~~~~~~al~ 364 (378)
T 3q15_A 341 SAAAVFESSCH-FEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCC-HHHHHHHHHHHHH
Confidence 67777888888 8888888888875
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.53 E-value=2e-12 Score=122.17 Aligned_cols=271 Identities=13% Similarity=-0.025 Sum_probs=188.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH----hhHHH
Q 038622 305 TLIDGFCKLKRIEEAEEIFDEMEIQGISRNSV----TYNTLIDGLCKSRRVEDAAQLMDQMIMEGL-KPDK----FTYNS 375 (587)
Q Consensus 305 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~----~~~~~ 375 (587)
..+..+...|++++|...+++........+.. .+..+...+...|++++|...++++..... .++. .++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445556677777777777766543222221 345556667778888888888887765211 1121 23566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC----ChHhHH
Q 038622 376 LLTYYCRAGDIKRAADIVQNMTSN----GCE--P-DIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVL----TPQAYN 444 (587)
Q Consensus 376 l~~~~~~~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~ 444 (587)
++..+...|++++|...+++.... +.. | ....+..++..+...|++++|...+++........ ....+.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 777888999999999999887653 111 2 23456678889999999999999999988753221 124677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCHHHHH-----HHHHHHHhCCCCHHHHHHHHHHHHHcCCCC---CHHHHH
Q 038622 445 PVIQALFRRKRTTEAMRLFREMMEKADP-PDALTYK-----HVFRGLCNGGGPIGEAVDFVIEMLERGFLP---EFSSFY 515 (587)
Q Consensus 445 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~-----~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p---~~~~~~ 515 (587)
.++..+...|++++|...++++...... .....+. ..+..+...|+ +++|...++++++....+ ....+.
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGD-KAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCC-HHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 8899999999999999999999864111 1111121 22344678899 999999999987632111 133567
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHhcCCCC-------CchhhhhhhHHHHHHHHHHHHhcchhhhccCc
Q 038622 516 MLAEGLVSLGKEETLVELIDMVMDKAKFS-------DRETSMVRGFLKIRKFQDALATFGDILDSRMP 576 (587)
Q Consensus 516 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 576 (587)
.++.++...|++++|...++++....+.. .....++.++...|++++|...+++++...+.
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 88999999999999999999987664432 13456677888999999999999998876543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.51 E-value=3.4e-13 Score=113.29 Aligned_cols=169 Identities=15% Similarity=0.130 Sum_probs=148.9
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038622 405 IVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRG 484 (587)
Q Consensus 405 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 484 (587)
...+..++..+...|++++|...++++.+..+. +...+..++..+...|++++|...++++++.. +.+...+..++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 345777888999999999999999998876433 67888999999999999999999999999874 6678888889999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHHHHHHH
Q 038622 485 LCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFLKIRKFQDA 563 (587)
Q Consensus 485 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A 563 (587)
+...|+ +++|.+.++++++.. +.+...+..++.++...|++++|...++++++..|.. ..+..++.++...|++++|
T Consensus 86 ~~~~~~-~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQK-YDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTC-HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcC-HHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHH
Confidence 999999 999999999999853 3478899999999999999999999999999999876 4578899999999999999
Q ss_pred HHhcchhhhccCch
Q 038622 564 LATFGDILDSRMPR 577 (587)
Q Consensus 564 ~~~~~~~~~~~~~~ 577 (587)
+..++++++..+..
T Consensus 164 ~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 164 LPHFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCc
Confidence 99999998876443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-12 Score=116.07 Aligned_cols=212 Identities=10% Similarity=-0.053 Sum_probs=119.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CcchH
Q 038622 334 NSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPD---KFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCE-P-DIVTY 408 (587)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~-~~~~~ 408 (587)
+...+...+..+...|++++|+..|++++..... + ...+..++.++...|++++|+..|+++++..+. | ....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 4445555555555556666666666555553211 1 334455555555555555555555555553211 1 12334
Q ss_pred HHHHHHHHh--------cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 038622 409 GTLIGGLCK--------AGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKH 480 (587)
Q Consensus 409 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 480 (587)
..++.++.. .|++++|...|+++.+..+. +......+... ...... ....+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~--------------~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKI--------------RELRAK----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHH--------------HHHHHH----HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHH--------------HHHHHH----HHHHHHH
Confidence 445555555 55555555555555543211 11111111100 000000 0011356
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHcc----------CCHhHHHHHHHHHHhcCCCCCc--
Q 038622 481 VFRGLCNGGGPIGEAVDFVIEMLERGFL-P-EFSSFYMLAEGLVSL----------GKEETLVELIDMVMDKAKFSDR-- 546 (587)
Q Consensus 481 l~~~~~~~~~~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~-- 546 (587)
++..+...|+ +++|+..++++++.... + .+.++..++.+|... |++++|+..++++++..|.++.
T Consensus 154 la~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 154 AARLYERREL-YEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHTTC-HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHccC-HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 7788889999 99999999999975311 1 356888999999877 8999999999999999998753
Q ss_pred --hhhhhhhHHHHHHHHHHHHh
Q 038622 547 --ETSMVRGFLKIRKFQDALAT 566 (587)
Q Consensus 547 --~~~~~~~~~~~~~~~~A~~~ 566 (587)
...+..++...++++++...
T Consensus 233 ~a~~~l~~~~~~~~~~~~~~~~ 254 (261)
T 3qky_A 233 TAEELYTRARQRLTELEGDASL 254 (261)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHHHHHhhhhhHH
Confidence 34444555666666655444
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=9.4e-14 Score=138.33 Aligned_cols=163 Identities=11% Similarity=0.111 Sum_probs=130.0
Q ss_pred HhhHHHHHHHHHHcCChhhHHHHHHhhc---cCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHH
Q 038622 20 VSTFNILIKALCKAHQIRPAILMMEEMP---GYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVL 96 (587)
Q Consensus 20 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 96 (587)
..+|+++|++|++.|++++|..+|++|. ..|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3579999999999999999999998765 3478999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC------cccHHHHHHH
Q 038622 97 VHGFCKEGR-IEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPD------VFTYNSLISG 169 (587)
Q Consensus 97 ~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~ 169 (587)
+.++++.|+ .++|.++|++|.+.|+.||..+|+.++....+. .+++..+++ ..++.|+ ..+...+.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence 999999998 478999999999999999999999887654443 444444444 2233333 3444556666
Q ss_pred HHhcCC---------HHHHHHHHHHHH
Q 038622 170 LCKLGE---------VEEAVEILNQMI 187 (587)
Q Consensus 170 ~~~~g~---------~~~a~~~~~~~~ 187 (587)
|.+.+. .++-.+.|++-+
T Consensus 282 ~s~d~~~s~pk~~~~~~~L~~~~~~Ql 308 (1134)
T 3spa_A 282 YAKDGRVSYPKLHLPLKTLQCLFEKQL 308 (1134)
T ss_dssp HCCCSCCCCCCCSSCHHHHHHHHHHHH
T ss_pred HccCCCCcCccccCCHHHHHHHHHHHH
Confidence 665542 355555555543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.7e-13 Score=115.78 Aligned_cols=172 Identities=8% Similarity=-0.030 Sum_probs=124.5
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHH----------------HHHHHHhcCChHHHHHHHHHHHH
Q 038622 370 KFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGT----------------LIGGLCKAGRVEVASKLLRSIQM 433 (587)
Q Consensus 370 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~ 433 (587)
...+...+..+...|++++|+..|+++++.++. +...+.. ++.++...|++++|+..++++++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344555667788899999999999998885332 4556666 88888888888888888888888
Q ss_pred cCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCCCCHH
Q 038622 434 KGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGG-PIGEAVDFVIEMLERGFLPEFS 512 (587)
Q Consensus 434 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~A~~~~~~~~~~~~~p~~~ 512 (587)
..+. +...+..++.++...|++++|+..|+++++.+ |.+...+..++..+...|. ..+.+...+++++. ..|...
T Consensus 83 ~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 158 (208)
T 3urz_A 83 KAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQY 158 (208)
T ss_dssp HCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHH
T ss_pred HCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhH
Confidence 6544 56788888888888888888888888888874 6677777777777665543 13445566666542 223334
Q ss_pred HHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc
Q 038622 513 SFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 513 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
.+..++.++...|++++|+..++++++..|..+.
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~ 192 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEA 192 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHH
Confidence 5566777888888888888888888888886543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.48 E-value=8.8e-13 Score=112.60 Aligned_cols=126 Identities=11% Similarity=0.094 Sum_probs=54.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcc
Q 038622 446 VIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSL 524 (587)
Q Consensus 446 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 524 (587)
++.++...|++++|+..|+++++.+ |.+...+..++.++...|+ +++|+..|+++++. .| ++.++..++.+|...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQ-EKDALRMYEKILQL--EADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 4444444555555555555544442 3344444444444444444 55555555554442 23 344444444444433
Q ss_pred CC--HhHHHHHHHHHHhcCCCCCchhhhhhhHHHHHHHHHHHHhcchhhhccC
Q 038622 525 GK--EETLVELIDMVMDKAKFSDRETSMVRGFLKIRKFQDALATFGDILDSRM 575 (587)
Q Consensus 525 g~--~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 575 (587)
|+ .+.+...++++....|....++..+.++...|++++|+..|+++++..|
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred hHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 32 2233333433332222111233344444444455555555555444444
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-12 Score=118.52 Aligned_cols=210 Identities=11% Similarity=-0.033 Sum_probs=109.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HhhHHHHHHHHHhcCCHHHH
Q 038622 315 RIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIME----GLKPD-KFTYNSLLTYYCRAGDIKRA 389 (587)
Q Consensus 315 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~A 389 (587)
++++|...|.++ +..|...|++++|...|.+++.. +..++ ..++..++.+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777776665 23456677777777777777652 11111 34566667777777777777
Q ss_pred HHHHHHHHHCCCC-CC----cchHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCC-C----hHhHHHHHHHHHhcCCHHH
Q 038622 390 ADIVQNMTSNGCE-PD----IVTYGTLIGGLCKA-GRVEVASKLLRSIQMKGIVL-T----PQAYNPVIQALFRRKRTTE 458 (587)
Q Consensus 390 ~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~ 458 (587)
+..+++.+..... .+ ..++..++.+|... |++++|+..++++.+..+.. + ..++..++..+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 7777766553110 01 23455566666664 66666666666665531110 0 2345555666666666666
Q ss_pred HHHHHHHHHhcCCCCCH------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHH--cc
Q 038622 459 AMRLFREMMEKADPPDA------LTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEF------SSFYMLAEGLV--SL 524 (587)
Q Consensus 459 A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~------~~~~~l~~~~~--~~ 524 (587)
|+..|+++++....... ..+..++.++...|+ +++|+..++++++ +.|+. ..+..++..+. ..
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~ 253 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATD-AVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDS 253 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTC-HHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCH
Confidence 66666666654211111 023444555555565 6666666666654 23321 12233444443 34
Q ss_pred CCHhHHHHHHHHHHhcCC
Q 038622 525 GKEETLVELIDMVMDKAK 542 (587)
Q Consensus 525 g~~~~A~~~~~~~~~~~~ 542 (587)
+++++|+..|+++...+|
T Consensus 254 ~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 254 EQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp TTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHhccCCccHH
Confidence 455555555555544444
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.3e-12 Score=113.72 Aligned_cols=188 Identities=12% Similarity=0.084 Sum_probs=107.0
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-C-ChHhHH
Q 038622 370 KFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPD---IVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIV-L-TPQAYN 444 (587)
Q Consensus 370 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~ 444 (587)
...+..++..+...|++++|+..|+.+++..+. + ...+..++.++...|++++|...|+++.+..+. | ...++.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 334444455555555555555555555543211 1 334445555555555555555555555543221 0 123444
Q ss_pred HHHHHHHh--------cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038622 445 PVIQALFR--------RKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYM 516 (587)
Q Consensus 445 ~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ 516 (587)
.++.++.. .|++++|+..|+++++.. |.+........ .+..+.. .-...+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~---------------~~~~~~~----~~~~~~~~ 153 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQ---------------KIRELRA----KLARKQYE 153 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHH---------------HHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHH---------------HHHHHHH----HHHHHHHH
Confidence 45555555 555555555555555431 11111111100 0000000 00112477
Q ss_pred HHHHHHccCCHhHHHHHHHHHHhcCCCCC----chhhhhhhHHHH----------HHHHHHHHhcchhhhccCchh
Q 038622 517 LAEGLVSLGKEETLVELIDMVMDKAKFSD----RETSMVRGFLKI----------RKFQDALATFGDILDSRMPRK 578 (587)
Q Consensus 517 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~----------~~~~~A~~~~~~~~~~~~~~~ 578 (587)
++.+|.+.|++++|+..++++++..|.+. .+..++.+|... |++++|+..|+++++..|...
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 89999999999999999999999998753 478888888877 999999999999999886654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.46 E-value=2.8e-11 Score=106.47 Aligned_cols=267 Identities=11% Similarity=0.058 Sum_probs=178.2
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 038622 274 SLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVED 353 (587)
Q Consensus 274 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 353 (587)
-..-.|.+..++.-. .+............+.+++...|++... ...+|....+..+.. |...+
T Consensus 22 n~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~---- 84 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK---- 84 (310)
T ss_dssp HHHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT----
T ss_pred HHHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc----
Confidence 344567777766632 2221122233444455667777766531 111333333333333 33322
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 038622 354 AAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGC-EPDIVTYGTLIGGLCKAGRVEVASKLLRSIQ 432 (587)
Q Consensus 354 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 432 (587)
|+..+++.+..+ .++...+..++.++...|++++|++++.+.+..+. .-+...+..++.++.+.|+.+.|.+.++++.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677888777654 45556666888889999999999999999877654 1256677888999999999999999999998
Q ss_pred HcCCCC-----ChHhHHHHHHH--HHhcC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 038622 433 MKGIVL-----TPQAYNPVIQA--LFRRK--RTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEML 503 (587)
Q Consensus 433 ~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~ 503 (587)
+. .| +..+...++.+ ....| ++++|..+|+++.+. .|+......+..++...|+ +++|.+.++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~-~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRN-IAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTC-HHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCC-HHHHHHHHHHHH
Confidence 84 44 24455555544 44444 899999999998775 5553333334447888899 999999999766
Q ss_pred Hc-----CC---CC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCchhhhhhhHHHHHHHHHHHHhcc
Q 038622 504 ER-----GF---LP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDRETSMVRGFLKIRKFQDALATFG 568 (587)
Q Consensus 504 ~~-----~~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 568 (587)
+. .. .| ++.++.+++.+....|+ +|.++++++.+..|+.+....+ --+...|+++...|.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~---~~k~~~Fd~~~~ky~ 307 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHH---QEIDAKFDELVRKYD 307 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHH---HHHHHHHHHHHHTCC
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHH---HHHHHHHHHHHHHhc
Confidence 42 00 25 68888889888888897 8999999999999987543322 235566777766653
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=9.4e-14 Score=138.33 Aligned_cols=116 Identities=15% Similarity=0.169 Sum_probs=102.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHH
Q 038622 90 NVTVNVLVHGFCKEGRIEDALSFIQEMVS---EGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSL 166 (587)
Q Consensus 90 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 166 (587)
..+|+.++.+|++.|++++|..+|++|.+ .|..||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 35689999999999999999999987754 478899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 038622 167 ISGLCKLGE-VEEAVEILNQMILRDCSPNTITYNTLISTL 205 (587)
Q Consensus 167 ~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (587)
+.++++.|+ .++|.++|++|...|+.||..+|+.++...
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~ 246 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence 999999987 478899999999999999999988776543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-12 Score=133.41 Aligned_cols=173 Identities=9% Similarity=-0.090 Sum_probs=99.6
Q ss_pred HhcCCHHHHHHHHHHHH--------HcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHh
Q 038622 346 CKSRRVEDAAQLMDQMI--------MEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCK 417 (587)
Q Consensus 346 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 417 (587)
...|++++|+..+++++ .. .+.+...+..++.++...|++++|+..++++++.++. +...+..++.++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 45566666666666665 32 1223445555666666666666666666666654322 44556666666666
Q ss_pred cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHH
Q 038622 418 AGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVD 497 (587)
Q Consensus 418 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~ 497 (587)
.|++++|.+.|+++.+..+. +...+..++.++...|++++ +..|+++++.+ |.+...+..++.++...|+ +++|++
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~-~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGD-RVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCC-HHHHHH
Confidence 66666666666666664332 44556666666666666666 66666666653 4455556666666666666 666666
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHccCC
Q 038622 498 FVIEMLERGFLP-EFSSFYMLAEGLVSLGK 526 (587)
Q Consensus 498 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 526 (587)
.|+++++ +.| +..++..++.++...|+
T Consensus 556 ~~~~al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCT--TSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcc--cCcccHHHHHHHHHHHHccCC
Confidence 6666665 345 35555666666655444
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=5.3e-12 Score=114.19 Aligned_cols=211 Identities=12% Similarity=0.007 Sum_probs=123.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CcchHHHHHHHHHhcCChHHH
Q 038622 350 RVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSN----GCEP-DIVTYGTLIGGLCKAGRVEVA 424 (587)
Q Consensus 350 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a 424 (587)
++++|...|.++ +..+...|++++|...|+++... +..+ ...++..++.+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366777776665 23456667777777777766542 1111 134667777777777777777
Q ss_pred HHHHHHHHHcCCCC-C----hHhHHHHHHHHHhc-CCHHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHhCCCCHH
Q 038622 425 SKLLRSIQMKGIVL-T----PQAYNPVIQALFRR-KRTTEAMRLFREMMEKAD-PPD----ALTYKHVFRGLCNGGGPIG 493 (587)
Q Consensus 425 ~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~ 493 (587)
+..++++....... + ..++..++.+|... |++++|+..|+++++... ..+ ..++..++..+...|+ ++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~ 175 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ-YI 175 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCC-HH
Confidence 77777766531110 1 24566777777775 777777777777776410 001 2346666777777777 77
Q ss_pred HHHHHHHHHHHcCCCC-CH-----HHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc------hhhhhhhHH--HHHH
Q 038622 494 EAVDFVIEMLERGFLP-EF-----SSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR------ETSMVRGFL--KIRK 559 (587)
Q Consensus 494 ~A~~~~~~~~~~~~~p-~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~~~~~--~~~~ 559 (587)
+|+..++++++..... .. ..+..++.++...|++++|+..++++++..|.... ...++..+. ..++
T Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~ 255 (292)
T 1qqe_A 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQ 255 (292)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHH
Confidence 7777777777632111 11 14566777777777777777777777776665321 122233232 3455
Q ss_pred HHHHHHhcchhhhccCc
Q 038622 560 FQDALATFGDILDSRMP 576 (587)
Q Consensus 560 ~~~A~~~~~~~~~~~~~ 576 (587)
+.+|+..|+++....+.
T Consensus 256 ~~~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 256 LSEHCKEFDNFMRLDKW 272 (292)
T ss_dssp HHHHHHHHTTSSCCCHH
T ss_pred HHHHHHHhccCCccHHH
Confidence 77777777776665543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.7e-10 Score=102.81 Aligned_cols=224 Identities=12% Similarity=0.046 Sum_probs=167.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH----Hhc---CCH
Q 038622 316 IEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSR--RVEDAAQLMDQMIMEGLKPDKFTYNSLLTYY----CRA---GDI 386 (587)
Q Consensus 316 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~ 386 (587)
.++|+..++.++..+ |.+..+|+.-..++...+ ++++++..++.++...++ +..+|+.-..++ ... +++
T Consensus 49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCH
Confidence 356777777776665 555666666666666666 777777777777765322 344454444444 344 678
Q ss_pred HHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC------HHH
Q 038622 387 KRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVE--VASKLLRSIQMKGIVLTPQAYNPVIQALFRRKR------TTE 458 (587)
Q Consensus 387 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~ 458 (587)
++++.+++.+++.++. +..+|..-..++...|.++ +++++++++.+.++. +..+|+.-..++...|. +++
T Consensus 127 ~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHH
Confidence 8888888888876544 6677777777777778777 888888888887665 77888888888887776 899
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHccCCHhHHHHHHHH
Q 038622 459 AMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERG-FLP-EFSSFYMLAEGLVSLGKEETLVELIDM 536 (587)
Q Consensus 459 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 536 (587)
+++.+.+++..+ |.|...|......+...|+..++...+..++++.+ ..| ++.++..++.+|.+.|+.++|+++++.
T Consensus 205 El~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 205 ELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 999999999875 78888898888888888885666777888777532 123 788999999999999999999999999
Q ss_pred HHh-cCCCC
Q 038622 537 VMD-KAKFS 544 (587)
Q Consensus 537 ~~~-~~~~~ 544 (587)
+.+ .+|..
T Consensus 284 l~~~~Dpir 292 (306)
T 3dra_A 284 LKSKYNPIR 292 (306)
T ss_dssp HHHTTCGGG
T ss_pred HHhccChHH
Confidence 986 57765
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=4.4e-13 Score=107.47 Aligned_cols=131 Identities=11% Similarity=-0.060 Sum_probs=91.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Q 038622 411 LIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGG 490 (587)
Q Consensus 411 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 490 (587)
|+.++...|++++|++.++......+. ++..+..++.+|...|++++|++.|+++++.+ |.+...+..++.++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence 455556667777777777777653211 33556677778888888888888888887764 6667777777777777777
Q ss_pred CHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHH-HHHHHhcCCCCCc
Q 038622 491 PIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVEL-IDMVMDKAKFSDR 546 (587)
Q Consensus 491 ~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~ 546 (587)
+++|+..|+++++ +.| ++.++..++.+|.+.|++++|.+. ++++++.+|.+..
T Consensus 81 -~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~ 135 (150)
T 4ga2_A 81 -TDKAVECYRRSVE--LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPA 135 (150)
T ss_dssp -HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHH
T ss_pred -hHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHH
Confidence 8888888888877 345 677777888888888877766554 5778887777643
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.39 E-value=3.8e-12 Score=114.97 Aligned_cols=228 Identities=15% Similarity=0.091 Sum_probs=154.0
Q ss_pred HccCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHhhHHHH
Q 038622 311 CKLKRIEEAEEIFDEMEIQ-------GISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIME------GLKP-DKFTYNSL 376 (587)
Q Consensus 311 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~-~~~~~~~l 376 (587)
...|++++|+..+++.... ..+....++..++..+...|++++|...+++++.. +..| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777665442 22334667888889999999999999999998864 2122 34578888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC-----CC-CC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-ChHh
Q 038622 377 LTYYCRAGDIKRAADIVQNMTSN-----GC-EP-DIVTYGTLIGGLCKAGRVEVASKLLRSIQMK------GIVL-TPQA 442 (587)
Q Consensus 377 ~~~~~~~~~~~~A~~~~~~~~~~-----~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~ 442 (587)
+.++...|++++|...+++++.. +. .| ....+..++..+...|++++|..+++++.+. ...| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 89999999999999999988764 11 12 3557788899999999999999999988775 1122 2357
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCC-CHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---Hc-C-CCC
Q 038622 443 YNPVIQALFRRKRTTEAMRLFREMMEK-------ADPP-DALTYKHVFRGLCNGGGPIGEAVDFVIEML---ER-G-FLP 509 (587)
Q Consensus 443 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~---~~-~-~~p 509 (587)
+..++.++...|++++|..+++++++. ...+ ....+..+.......+. ...+.. +..+. +. + ..|
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~ 249 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDK-RRDSAP-YGEYGSWYKACKVDSP 249 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCC-CCC-------------CCCCCCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCc-hhHHHH-HHHHHHHHHhcCCCCH
Confidence 788999999999999999999999873 1122 22233333333333222 222222 22221 11 0 123
Q ss_pred -CHHHHHHHHHHHHccCCHhHHHHHHHHHHhc
Q 038622 510 -EFSSFYMLAEGLVSLGKEETLVELIDMVMDK 540 (587)
Q Consensus 510 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 540 (587)
...++..++.+|...|++++|..+++++++.
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567788999999999999999999998764
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-12 Score=104.02 Aligned_cols=145 Identities=15% Similarity=0.101 Sum_probs=112.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 038622 376 LLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKR 455 (587)
Q Consensus 376 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 455 (587)
|+..+...|++++|+..++......+. +...+..++.+|...|++++|++.|+++++..+. +..+|..++.++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCc
Confidence 445556677888888888887764221 3556778888999999999999999998886544 67888999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCCC-CHHHHHHHHHHHHccCC
Q 038622 456 TTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVD-FVIEMLERGFLP-EFSSFYMLAEGLVSLGK 526 (587)
Q Consensus 456 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~-~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 526 (587)
+++|+..|+++++.+ |.+...+..++..+...|+ +++|.+ +++++++ +.| ++.++...+.++...|+
T Consensus 81 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~-~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDV-TDGRAKYWVERAAK--LFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCS-SSSHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCc
Confidence 999999999999874 6677888888888888888 766555 4688888 456 68888888888888775
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.38 E-value=2.2e-12 Score=116.53 Aligned_cols=228 Identities=16% Similarity=0.071 Sum_probs=160.2
Q ss_pred HhcCCHHHHHHHHHHHHHc-------CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CcchHHHH
Q 038622 346 CKSRRVEDAAQLMDQMIME-------GLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSN------GCEP-DIVTYGTL 411 (587)
Q Consensus 346 ~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~-~~~~~~~l 411 (587)
...|++++|+..+++++.. ..+....++..++.++...|++++|...+++++.. +..| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567888888888777752 11223457888899999999999999999988764 1112 35578889
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc-----CC--CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhc------CC-CCCHHH
Q 038622 412 IGGLCKAGRVEVASKLLRSIQMK-----GI--VLTPQAYNPVIQALFRRKRTTEAMRLFREMMEK------AD-PPDALT 477 (587)
Q Consensus 412 ~~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~ 477 (587)
+.++...|++++|...++++... +. +.....+..++..+...|++++|+..++++++. +. +.....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 11 123467888999999999999999999999985 11 223456
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHc-------CCCC-CHHHHHHHHHHHHccCCHhHHHH------HHHHHHhcCCC
Q 038622 478 YKHVFRGLCNGGGPIGEAVDFVIEMLER-------GFLP-EFSSFYMLAEGLVSLGKEETLVE------LIDMVMDKAKF 543 (587)
Q Consensus 478 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~A~~------~~~~~~~~~~~ 543 (587)
+..++..+...|+ +++|..+++++++. ...+ ....+..++..+...+....+.. .++......|.
T Consensus 172 ~~~la~~~~~~g~-~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGK-YQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHH
T ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHH
Confidence 7788888999999 99999999999863 1123 34455556655555444433333 22222222121
Q ss_pred C-CchhhhhhhHHHHHHHHHHHHhcchhhhcc
Q 038622 544 S-DRETSMVRGFLKIRKFQDALATFGDILDSR 574 (587)
Q Consensus 544 ~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 574 (587)
. ..+..++.+|...|++++|+..|+++++..
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 1 236788899999999999999999988753
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-11 Score=107.26 Aligned_cols=186 Identities=10% Similarity=-0.025 Sum_probs=107.6
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--HhHH
Q 038622 369 DKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPD--IVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTP--QAYN 444 (587)
Q Consensus 369 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 444 (587)
+...+..++..+...|++++|+..|++++...+... ...+..++.++...|++++|+..|+++.+..+.... .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 344566667778888888888888888887532211 246777888888888888888888888876433111 2566
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 038622 445 PVIQALFR------------------RKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERG 506 (587)
Q Consensus 445 ~l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 506 (587)
.++.++.. .|++++|+..|+++++.. |.+.......... +. . ....
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l----~~-~------~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRL----VF-L------KDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHH----HH-H------HHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHH----HH-H------HHHH----
Confidence 66666654 345566666666665542 2222111100000 00 0 0000
Q ss_pred CCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC----chhhhhhhHHHHHHHHHHHHhcchhhhcc
Q 038622 507 FLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD----RETSMVRGFLKIRKFQDALATFGDILDSR 574 (587)
Q Consensus 507 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 574 (587)
......++..|.+.|++++|+..++++++..|.++ .+..++.+|.+.|++++|++.++++....
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 00113455666666666666666666666666542 35566666666666666666666665544
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-12 Score=108.24 Aligned_cols=162 Identities=13% Similarity=0.079 Sum_probs=120.0
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-
Q 038622 406 VTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRG- 484 (587)
Q Consensus 406 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~- 484 (587)
..+..++..+...|++++|...++++.+..+. +...+..++.++...|++++|+..+++++... | +..........
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-p-~~~~~~~~~~~~ 83 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEY-Q-DNSYKSLIAKLE 83 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-C-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-C-ChHHHHHHHHHH
Confidence 45667777888888888888888887775333 56778888888888888888888888887753 3 54433332222
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-C--chhhhhhhHHHHHHH
Q 038622 485 LCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-D--RETSMVRGFLKIRKF 560 (587)
Q Consensus 485 ~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~ 560 (587)
+...+. ..+|+..++++++. .| ++..+..++.++...|++++|+..++++++.+|.. + .+..++.++...|+.
T Consensus 84 ~~~~~~-~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 84 LHQQAA-ESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHHHT-SCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred HHhhcc-cchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCC
Confidence 122223 34678888888874 46 68888888888888999999999999888888864 2 477788888888888
Q ss_pred HHHHHhcchhhhc
Q 038622 561 QDALATFGDILDS 573 (587)
Q Consensus 561 ~~A~~~~~~~~~~ 573 (587)
++|+..|++.+.+
T Consensus 161 ~~A~~~y~~al~~ 173 (176)
T 2r5s_A 161 NAIASKYRRQLYS 173 (176)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH
Confidence 8888888877653
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.4e-11 Score=123.39 Aligned_cols=173 Identities=12% Similarity=-0.039 Sum_probs=142.6
Q ss_pred HccCCHHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 038622 311 CKLKRIEEAEEIFDEME--------IQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCR 382 (587)
Q Consensus 311 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 382 (587)
...|++++|++.++++. ... +.+...+..++.++...|++++|+..++++++.. +.+...+..++.++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 77899999999999988 443 5677888889999999999999999999999863 3367788889999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHH
Q 038622 383 AGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRL 462 (587)
Q Consensus 383 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 462 (587)
.|++++|+..|+++++.++. +...+..++.++...|++++ .+.|+++.+.++. +..+|..++.++...|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999986543 67788999999999999999 9999999987544 668899999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhCC
Q 038622 463 FREMMEKADPPDALTYKHVFRGLCNGG 489 (587)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~l~~~~~~~~ 489 (587)
|+++++.+ |.+...+..++.++...+
T Consensus 557 ~~~al~l~-P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 557 LDEVPPTS-RHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHTSCTTS-TTHHHHHHHHHHHTC---
T ss_pred HHhhcccC-cccHHHHHHHHHHHHccC
Confidence 99998863 444556666776665544
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.36 E-value=7.7e-11 Score=102.01 Aligned_cols=190 Identities=9% Similarity=-0.013 Sum_probs=139.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc---chH
Q 038622 334 NSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLK-PD-KFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDI---VTY 408 (587)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~ 408 (587)
+...+..++..+...|++++|+..|++++...+. |. ...+..++.++...|++++|+..|+++++..+. +. ..+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCcHHHHH
Confidence 4556777888899999999999999999985322 11 356788899999999999999999999986433 22 256
Q ss_pred HHHHHHHHh------------------cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038622 409 GTLIGGLCK------------------AGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKA 470 (587)
Q Consensus 409 ~~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 470 (587)
..++.++.. .|++++|...|+++++..+. +...+........ +....
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~----------~~~~~---- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVF----------LKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHH----------HHHHH----
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHH----------HHHHH----
Confidence 667777664 57899999999999986433 3333322111100 00111
Q ss_pred CCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-C---HHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc
Q 038622 471 DPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-E---FSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 471 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
......++..+...|+ +++|+..++++++. .| + +.++..++.+|.+.|++++|++.++++....|....
T Consensus 147 ----~~~~~~~a~~~~~~~~-~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGA-WVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ----HHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ----HHHHHHHHHHHHHcCc-HHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 0112346677888999 99999999999984 35 3 367899999999999999999999999998887643
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.36 E-value=7.2e-11 Score=92.91 Aligned_cols=133 Identities=15% Similarity=0.225 Sum_probs=105.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038622 407 TYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLC 486 (587)
Q Consensus 407 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (587)
.+..++..+...|++++|..+++++.+..+. +...+..++..+...|++++|...++++...+ +.+...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 4566777888888888888888888776433 56677788888888888888888888888764 566777777888888
Q ss_pred hCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCC
Q 038622 487 NGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKF 543 (587)
Q Consensus 487 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 543 (587)
..|+ +++|.+.++++++.. +.+...+..++.++...|++++|...++++++..|.
T Consensus 81 ~~~~-~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 81 KQGD-YDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTTC-HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HhcC-HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 8888 888988888888743 336778888888888889999999888888887764
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=8.5e-12 Score=112.34 Aligned_cols=163 Identities=11% Similarity=-0.006 Sum_probs=103.3
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH-HHH
Q 038622 404 DIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYK-HVF 482 (587)
Q Consensus 404 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~ 482 (587)
+...+..++..+...|++++|...++++....+. +...+..++.++...|++++|...++++... .|+..... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence 3445566666666777777777777777665433 4566667777777777777777777776664 23333222 222
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC--C-chhhhhhhHHHHH
Q 038622 483 RGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS--D-RETSMVRGFLKIR 558 (587)
Q Consensus 483 ~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~ 558 (587)
..+...++ .++|+..++++++. .| +..++..++.+|...|++++|+..++++++.+|.. . .+..++.++...|
T Consensus 193 ~~l~~~~~-~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 193 IELLXQAA-DTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHT-SCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHhhcc-cCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 23445555 66677777777763 34 56677777777777777777777777777777654 2 3566666677777
Q ss_pred HHHHHHHhcchhhh
Q 038622 559 KFQDALATFGDILD 572 (587)
Q Consensus 559 ~~~~A~~~~~~~~~ 572 (587)
+.++|...|++.+.
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 77777777666554
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.33 E-value=7e-09 Score=100.37 Aligned_cols=420 Identities=13% Similarity=0.031 Sum_probs=217.6
Q ss_pred hcC-ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC-hHHH
Q 038622 67 EEG-NLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGH-VKQA 144 (587)
Q Consensus 67 ~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a 144 (587)
+.| +++.|+.+|+.+...- |. |+++.+..+|++.+.. .|+...|...+....+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~~-P~---------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLY-MS---------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHHH-HT---------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHHC-CC---------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 456 4888888888888752 21 8899999999999885 5788888888887777663 4556
Q ss_pred HHHHHHHHhC-CCCC-CcccHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCC-h-hhHHHHHHHHhccCCHHHHHH
Q 038622 145 LEVMDMMLQE-GFDP-DVFTYNSLISGLC----KLGEVEEAVEILNQMILRDCSPN-T-ITYNTLISTLCKENQVEEATE 216 (587)
Q Consensus 145 ~~~~~~~~~~-~~~~-~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~a~~ 216 (587)
..+|+.++.. |..+ +...|...+..+. ..|+.+.+..+|++++.. |+. . ..|...... ........+..
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~f-E~~~~~~~~~~ 144 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMGSLSELWKDFENF-ELELNKITGKK 144 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCTTHHHHHHHHHHH-HHHHCHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHH-HHHhccccHHH
Confidence 7777777653 3222 3455555554433 235677777788777763 211 1 111111111 01111111111
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCC-hHHHHHHHHHHHHCC
Q 038622 217 LARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGM-LEEALKLLKEMESSG 295 (587)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~ 295 (587)
++.+. .+.+..|..+++.+...--..+...|...+..-...+. .+..
T Consensus 145 ~~~~~---------------------~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~----------- 192 (493)
T 2uy1_A 145 IVGDT---------------------LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGR----------- 192 (493)
T ss_dssp HHHHH---------------------HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHH-----------
T ss_pred HHHHH---------------------hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcch-----------
Confidence 11110 11233344444433321000122233332222111100 0000
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHH
Q 038622 296 CARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNS 375 (587)
Q Consensus 296 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 375 (587)
+..+.+..+|++++... |..+..|...+..+...|+.+.|..++++++.. +.+...+..
T Consensus 193 ------------------~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~ 251 (493)
T 2uy1_A 193 ------------------PHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY 251 (493)
T ss_dssp ------------------HHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH
T ss_pred ------------------hhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH
Confidence 00122334444444332 333444444444444555555555555555543 111111111
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC---------C---CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhH
Q 038622 376 LLTYYCRAGDIKRAADIVQNMTSN---------G---CEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAY 443 (587)
Q Consensus 376 l~~~~~~~~~~~~A~~~~~~~~~~---------~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 443 (587)
|....+.++. ++.+... + .......|...+....+.++.+.|..+|+++ .. +..+...|
T Consensus 252 ----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~ 322 (493)
T 2uy1_A 252 ----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVF 322 (493)
T ss_dssp ----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHH
T ss_pred ----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHH
Confidence 1110000111 1111100 0 0001245666677777788899999999998 32 22355566
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038622 444 NPVIQALFRRK-RTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLV 522 (587)
Q Consensus 444 ~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 522 (587)
...+..-...+ +.+.|..+|+.+++.. +.++..+...+......|+ .+.|..+++++. .....|...+..-.
T Consensus 323 i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~-~~~aR~l~er~~-----k~~~lw~~~~~fE~ 395 (493)
T 2uy1_A 323 IYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGD-EENARALFKRLE-----KTSRMWDSMIEYEF 395 (493)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC-HHHHHHHHHHSC-----CBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 55454444444 6999999999999863 4455666667777777888 999999999862 35677777777777
Q ss_pred ccCCHhHHHHHHHHHHhcCC-----CCC-chhhhhhhHHHHHHHHHHHHhcchhhhccCc
Q 038622 523 SLGKEETLVELIDMVMDKAK-----FSD-RETSMVRGFLKIRKFQDALATFGDILDSRMP 576 (587)
Q Consensus 523 ~~g~~~~A~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 576 (587)
..|+.+.+..+++++.+.-. ++. ....|...--..|.+++.+..|.-+.-...+
T Consensus 396 ~~G~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~fe~~~g~l~~~~~~~~~~~~~~~~ 455 (493)
T 2uy1_A 396 MVGSMELFRELVDQKMDAIKADAILPPLPPREHNVQMEGILGRYHCFLDSFNFLDLKIRD 455 (493)
T ss_dssp HHSCHHHHHHHHHHHHHHHHTTCCBCCCCCC--CCCCCHHHHHHHHHHHHHCBTTBCCCC
T ss_pred HCCCHHHHHHHHHHHHHHhcccccCCcccccccHHHHHHHhhhHHHHHHHhhhhccccCC
Confidence 88999999999988875211 111 1233333334568888888888665544433
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-09 Score=96.32 Aligned_cols=231 Identities=8% Similarity=0.039 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hhc---CCHH
Q 038622 282 EEALKLLKEMESSGCARNVVTYNTLIDGFCKLK--RIEEAEEIFDEMEIQGISRNSVTYNTLIDGL----CKS---RRVE 352 (587)
Q Consensus 282 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~ 352 (587)
++|+..+..++..+ |....+|+.-..++...| ++++++..++.++..+ |.+..+|+.-..++ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 46666666666654 445556666666666666 6666666666666654 44555555544444 333 5667
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC------hHHH
Q 038622 353 DAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIK--RAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGR------VEVA 424 (587)
Q Consensus 353 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~a 424 (587)
+++.++++++... +-+..+|..-..+....|.++ +++.+++++++.++. |...|.....++...++ ++++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHH
Confidence 7777777777653 225556666666666666666 777777777765544 55566666666655555 7778
Q ss_pred HHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHH-HHHHHHHHHhcC--CCCCHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 038622 425 SKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTE-AMRLFREMMEKA--DPPDALTYKHVFRGLCNGGGPIGEAVDFVIE 501 (587)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~ 501 (587)
++.+++++..++. +..+|+.+...+...|+..+ +..+..++.+.+ -+.+...+..++..+.+.|+ .++|++.++.
T Consensus 206 l~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~-~~~A~~~~~~ 283 (306)
T 3dra_A 206 LNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKK-YNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHH
Confidence 8888777776554 66778777777777776444 445666655432 14466677777777777777 8888888888
Q ss_pred HHHcCCCC-CHHHHHHHHH
Q 038622 502 MLERGFLP-EFSSFYMLAE 519 (587)
Q Consensus 502 ~~~~~~~p-~~~~~~~l~~ 519 (587)
+.+. ++| ....|...+.
T Consensus 284 l~~~-~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 284 LKSK-YNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHT-TCGGGHHHHHHHHH
T ss_pred HHhc-cChHHHHHHHHHHh
Confidence 8753 356 5555554443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.9e-10 Score=98.24 Aligned_cols=176 Identities=11% Similarity=0.035 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcC----ChHHHHHHH
Q 038622 353 DAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAG----RVEVASKLL 428 (587)
Q Consensus 353 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 428 (587)
+|...|+++.+.| ++..+..+...+...+++++|+..|++..+.| +...+..++.+|.. + ++++|.++|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4566677766643 56666777777777777777777777777653 45666677777766 5 788888888
Q ss_pred HHHHHcCCCCChHhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHh----CCCCHHHHHHH
Q 038622 429 RSIQMKGIVLTPQAYNPVIQALFR----RKRTTEAMRLFREMMEKADPP--DALTYKHVFRGLCN----GGGPIGEAVDF 498 (587)
Q Consensus 429 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~~~~~~~A~~~ 498 (587)
++..+.+ ++.++..++..|.. .+++++|+.+|+++.+.+ +. ....+..++..+.. .++ +++|+.+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~-~~~~~~~a~~~Lg~~y~~g~g~~~d-~~~A~~~ 151 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS-ESDAAVDAQMLLGLIYASGVHGPED-DVKASEY 151 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST-TSHHHHHHHHHHHHHHHHTSSSSCC-HHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC-CCcchHHHHHHHHHHHHcCCCCCCC-HHHHHHH
Confidence 8776642 56677777777776 778888888888888764 21 25566667777666 556 8888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcc-C-----CHhHHHHHHHHHHhcCC
Q 038622 499 VIEMLERGFLPEFSSFYMLAEGLVSL-G-----KEETLVELIDMVMDKAK 542 (587)
Q Consensus 499 ~~~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 542 (587)
++++.+. .+++.++..|+.+|... | ++++|+.+++++.+.+.
T Consensus 152 ~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 152 FKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 8888873 34566777788877643 3 78888888888887764
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.32 E-value=6.8e-11 Score=101.04 Aligned_cols=178 Identities=14% Similarity=0.050 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC----CHHHHHHH
Q 038622 387 KRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRK----RTTEAMRL 462 (587)
Q Consensus 387 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~ 462 (587)
.+|...|++..+.| ++..+..++..|...+++++|..+|++..+.+ ++.++..++..|.. + ++++|+++
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35778888888753 67788999999999999999999999999853 67888999999888 6 89999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHc----cCCHhHHH
Q 038622 463 FREMMEKADPPDALTYKHVFRGLCN----GGGPIGEAVDFVIEMLERGFLPE---FSSFYMLAEGLVS----LGKEETLV 531 (587)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~ 531 (587)
|+++.+.+ +...+..++..+.. .++ +++|+.+++++.+.+ |+ +.++..|+.+|.. .+++++|+
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d-~~~A~~~~~~A~~~~--~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~ 149 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATD-VAHAITLLQDAARDS--ESDAAVDAQMLLGLIYASGVHGPEDDVKAS 149 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCC-HHHHHHHHHHHTSST--TSHHHHHHHHHHHHHHHHTSSSSCCHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccC-HHHHHHHHHHHHHcC--CCcchHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 99998854 66777778877766 667 999999999999854 43 8899999999998 88999999
Q ss_pred HHHHHHHhcCCCCCchhhhhhhHHHH-H-----HHHHHHHhcchhhhccCch
Q 038622 532 ELIDMVMDKAKFSDRETSMVRGFLKI-R-----KFQDALATFGDILDSRMPR 577 (587)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~A~~~~~~~~~~~~~~ 577 (587)
.+++++.+.++.+.....++.+|... | ++++|+..|+++.+.+...
T Consensus 150 ~~~~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~ 201 (212)
T 3rjv_A 150 EYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDT 201 (212)
T ss_dssp HHHHHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHH
Confidence 99999999855556678888877654 3 8999999999999877544
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-09 Score=96.50 Aligned_cols=179 Identities=15% Similarity=0.104 Sum_probs=80.0
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 038622 144 ALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDC-SPNTITYNTLISTLCKENQVEEATELARVLT 222 (587)
Q Consensus 144 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 222 (587)
|+..+++....+ +++..++..++.++...|++++|++++.+.+..+. ..+..++..++.++.+.|+.+.|.+.++.+.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444455444432 22333334455555555555555555555544431 1234445555555555555555555555554
Q ss_pred hCCCCC-----CHhhHHHHHHH--HHhcC--ChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 038622 223 SKGILP-----DVCTFNSLIQG--LCLTS--NFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMES 293 (587)
Q Consensus 223 ~~~~~~-----~~~~~~~l~~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 293 (587)
+. .| +..+...++.+ ....| ++.+|..+|+++... .|+..+...+..++...|++++|...++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 43 22 13333334333 22222 555555555555433 23311212222245555555555555554433
Q ss_pred CC---------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 038622 294 SG---------CARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQ 329 (587)
Q Consensus 294 ~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 329 (587)
.. -+.++.++..++.+....|+ +|.++++++...
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 20 02334444344333333444 455555555544
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.31 E-value=2.6e-09 Score=103.38 Aligned_cols=360 Identities=7% Similarity=-0.046 Sum_probs=188.9
Q ss_pred CChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHc-CC-CCChhhHHHHHHHHH----hcCCH
Q 038622 34 HQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGN-LDGALRIREQMVEH-GC-LVTNVTVNVLVHGFC----KEGRI 106 (587)
Q Consensus 34 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~~~~ 106 (587)
|+++.+..+|++.... .|+...|...+....+.++ .+....+|+.++.. |. +.+..+|...+..+. ..++.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 8899999999999875 5789999988888777663 45677888887764 21 446677877776654 34678
Q ss_pred HHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHH
Q 038622 107 EDALSFIQEMVSEGFNPD--QFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILN 184 (587)
Q Consensus 107 ~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 184 (587)
+.+..+|++++.. |+. ...|......-.. .....+..++.... +.+..|..+++
T Consensus 106 ~~vR~iy~rAL~~--P~~~~~~lw~~Y~~fE~~-~~~~~~~~~~~~~~---------------------~~y~~ar~~y~ 161 (493)
T 2uy1_A 106 EKIRNGYMRALQT--PMGSLSELWKDFENFELE-LNKITGKKIVGDTL---------------------PIFQSSFQRYQ 161 (493)
T ss_dssp HHHHHHHHHHHTS--CCTTHHHHHHHHHHHHHH-HCHHHHHHHHHHHH---------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--hhhhHHHHHHHHHHHHHH-hccccHHHHHHHHh---------------------HHHHHHHHHHH
Confidence 8899999999874 322 1122222221111 11122222222111 11222222222
Q ss_pred HHHhCCCCCChhhHHHHHHHHhccC-------CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 038622 185 QMILRDCSPNTITYNTLISTLCKEN-------QVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMK 257 (587)
Q Consensus 185 ~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 257 (587)
.+...-...+...|...+..-...+ ..+.+..+|++++.. .+..+..|...+..+...|+.+.|..+|++.+
T Consensus 162 ~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi 240 (493)
T 2uy1_A 162 QIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGI 240 (493)
T ss_dssp HHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2221100012223333333222110 023344555555553 23345555555555556666666666666666
Q ss_pred HcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 038622 258 TKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESS--------GCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQ 329 (587)
Q Consensus 258 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 329 (587)
.. |.+...+...+.. ...++. ...+.+..... ........|...+....+.++.+.|..+|.++ ..
T Consensus 241 ~~--P~~~~l~~~y~~~-~e~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~ 314 (493)
T 2uy1_A 241 EM--SDGMFLSLYYGLV-MDEEAV--YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN 314 (493)
T ss_dssp HH--CCSSHHHHHHHHH-TTCTHH--HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT
T ss_pred hC--CCcHHHHHHHHhh-cchhHH--HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC
Confidence 55 3333222222111 011110 11111110000 00112244566666666667788888888877 32
Q ss_pred CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchH
Q 038622 330 GISRNSVTYNTLIDGLCKS-RRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTY 408 (587)
Q Consensus 330 ~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 408 (587)
.+.+...|...+..-... ++.+.|..+|+.+++.. +.++..+...+......|+.+.|..+|+++. .....|
T Consensus 315 -~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw 387 (493)
T 2uy1_A 315 -EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMW 387 (493)
T ss_dssp -SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHH
T ss_pred -CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHH
Confidence 122344444333322222 35888888888887752 2234445556666677788888888888862 145566
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Q 038622 409 GTLIGGLCKAGRVEVASKLLRSIQM 433 (587)
Q Consensus 409 ~~l~~~~~~~~~~~~a~~~~~~~~~ 433 (587)
...+..-...|+.+.+.+++++..+
T Consensus 388 ~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 388 DSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6666666677888888888777764
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.29 E-value=6.5e-11 Score=91.27 Aligned_cols=101 Identities=15% Similarity=0.129 Sum_probs=90.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 038622 441 QAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAE 519 (587)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 519 (587)
..+...+..+.+.|++++|+..|+++++.+ |.+...+..++.++...|+ +++|+..++++++. .| +..++..++.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~--~p~~~~a~~~lg~ 89 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLME-FQRALDDCDTCIRL--DSKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhcc-HHHHHHHHHHHHHh--hhhhhHHHHHHHH
Confidence 577888999999999999999999999875 7788888899999999999 99999999999984 46 7889999999
Q ss_pred HHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 520 GLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 520 ~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
+|...|++++|++.++++++.+|.+.
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l~P~~~ 115 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQVDPSNE 115 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCcCCH
Confidence 99999999999999999999999874
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=9.8e-11 Score=117.05 Aligned_cols=155 Identities=15% Similarity=0.064 Sum_probs=71.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHH
Q 038622 384 GDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLF 463 (587)
Q Consensus 384 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 463 (587)
|++++|...++++.+.... +...+..++..+...|++++|.+.++++.+..+. +...+..++.++...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp ------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4445555555554443221 3444555555555555555555555555553222 3445555555555555555555555
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcc---CCHhHHHHHHHHHHh
Q 038622 464 REMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSL---GKEETLVELIDMVMD 539 (587)
Q Consensus 464 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 539 (587)
+++++.. +.+...+..++..+...|+ +++|++.++++++. .| +..++..++.++... |++++|.+.++++++
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQ-AEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 5555543 3444455555555555555 55555555555552 23 455555555555555 555555555555555
Q ss_pred cCCCC
Q 038622 540 KAKFS 544 (587)
Q Consensus 540 ~~~~~ 544 (587)
.+|..
T Consensus 157 ~~p~~ 161 (568)
T 2vsy_A 157 QGVGA 161 (568)
T ss_dssp HTCCC
T ss_pred cCCcc
Confidence 55543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=9.2e-11 Score=105.55 Aligned_cols=165 Identities=14% Similarity=0.088 Sum_probs=130.4
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChH-hHHHH
Q 038622 368 PDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQ-AYNPV 446 (587)
Q Consensus 368 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l 446 (587)
.+...+..++..+...|++++|...|+++....+. +...+..++.++...|++++|...++++.... |+.. .....
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHH
Confidence 34556677778888889999999999888876443 56778888888999999999999998887753 3433 33344
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-C--HHHHHHHHHHHHc
Q 038622 447 IQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-E--FSSFYMLAEGLVS 523 (587)
Q Consensus 447 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~--~~~~~~l~~~~~~ 523 (587)
...+...++.++|+..++++++.. |.+...+..++..+...|+ +++|+..+.++++. .| + ..++..++.++..
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~-~~~A~~~l~~~l~~--~p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGR-NEEALELLFGHLRX--DLTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTGGGGHHHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHccc-HHHHHHHHHHHHhc--ccccccchHHHHHHHHHHH
Confidence 445667788888999999998875 7778888888888999998 99999999999984 35 2 6788899999999
Q ss_pred cCCHhHHHHHHHHHHh
Q 038622 524 LGKEETLVELIDMVMD 539 (587)
Q Consensus 524 ~g~~~~A~~~~~~~~~ 539 (587)
.|+.++|...+++.+.
T Consensus 268 ~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 268 LGTGDALASXYRRQLY 283 (287)
T ss_dssp HCTTCHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHH
Confidence 9999999999988764
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.7e-11 Score=99.47 Aligned_cols=163 Identities=11% Similarity=0.095 Sum_probs=114.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHH-H
Q 038622 372 TYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQA-L 450 (587)
Q Consensus 372 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~ 450 (587)
.+...+..+...|++++|...++++++..+. +...+..++.++...|++++|...++++....+ ++..+...+.. +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHH
Confidence 3445666677778888888888777664332 556777778888888888888888887766432 33333332222 1
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhH
Q 038622 451 FRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEET 529 (587)
Q Consensus 451 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 529 (587)
...+...+|+..++++++.. |.+...+..++..+...|+ +++|+..++++++....+ +..++..++.++...|+.++
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGR-DEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc-HHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 22233445788888888864 6667788888888888888 999999999988743111 25678888999999999999
Q ss_pred HHHHHHHHHh
Q 038622 530 LVELIDMVMD 539 (587)
Q Consensus 530 A~~~~~~~~~ 539 (587)
|...|++++.
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998888764
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.28 E-value=8e-11 Score=92.65 Aligned_cols=132 Identities=15% Similarity=0.274 Sum_probs=116.8
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038622 441 QAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEG 520 (587)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 520 (587)
..+..++..+...|++++|..+++++++.+ +.+...+..++..+...|+ +++|...++++++.+ +.+...+..++.+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGD-YDEAIEYYQKALELD-PRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcC-HHHHHHHHHHHHHHC-CCchHHHHHHHHH
Confidence 357788999999999999999999999874 6677888888888999999 999999999999853 3478889999999
Q ss_pred HHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHHHHHHHHHhcchhhhccC
Q 038622 521 LVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFLKIRKFQDALATFGDILDSRM 575 (587)
Q Consensus 521 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 575 (587)
+...|++++|...++++++..|.. ..+..++.++...|++++|...++++++..+
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 999999999999999999998876 4578889999999999999999999987664
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.27 E-value=2.9e-11 Score=96.01 Aligned_cols=102 Identities=10% Similarity=0.037 Sum_probs=91.4
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 038622 440 PQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLA 518 (587)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 518 (587)
...+..++..+...|++++|+..|++++..+ |.+...|..++.++...|+ +++|+..|+++++. .| ++.++..++
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~-~~~Ai~~~~~al~l--~P~~~~~~~~lg 111 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQ-FQQAADLYAVAFAL--GKNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--SSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcc-HHHHHHHHHHHHhh--CCCCcHHHHHHH
Confidence 4678889999999999999999999999975 7788889999999999999 99999999999984 56 788999999
Q ss_pred HHHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 519 EGLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 519 ~~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
.+|...|++++|+..|+++++..|+++
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999998764
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=4.9e-11 Score=119.24 Aligned_cols=155 Identities=11% Similarity=-0.024 Sum_probs=123.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHH
Q 038622 418 AGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVD 497 (587)
Q Consensus 418 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~ 497 (587)
.|++++|.+.++++.+..+. +...+..++..+...|++++|++.|+++++.. +.+...+..++..+...|+ +++|++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~-~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQR-HAEAAV 78 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTC-HHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC-HHHHHH
Confidence 47899999999999886433 57889999999999999999999999999975 6678889999999999999 999999
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHH---HHHHHHHHhcchhhh
Q 038622 498 FVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFLKI---RKFQDALATFGDILD 572 (587)
Q Consensus 498 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~A~~~~~~~~~ 572 (587)
.++++++. .| +...+..++.+|...|++++|++.++++++..|.. ..+..++.++... |++++|...++++++
T Consensus 79 ~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 99999985 46 78999999999999999999999999999999976 4578889999999 999999999999998
Q ss_pred ccCch
Q 038622 573 SRMPR 577 (587)
Q Consensus 573 ~~~~~ 577 (587)
..+..
T Consensus 157 ~~p~~ 161 (568)
T 2vsy_A 157 QGVGA 161 (568)
T ss_dssp HTCCC
T ss_pred cCCcc
Confidence 87653
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1e-10 Score=93.22 Aligned_cols=115 Identities=10% Similarity=-0.070 Sum_probs=97.6
Q ss_pred HHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 038622 427 LLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERG 506 (587)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 506 (587)
.++++....+. +...+..++..+...|++++|+..|++++..+ |.+...+..++.++...|+ +++|+..++++++.
T Consensus 9 ~~~~al~~~p~-~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l- 84 (148)
T 2vgx_A 9 TIAMLNEISSD-TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQ-YDLAIHSYSYGAVM- 84 (148)
T ss_dssp SHHHHTTCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH-
T ss_pred hHHHHHcCCHh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhc-
Confidence 45555553211 44678889999999999999999999999875 7788888899999999999 99999999999984
Q ss_pred CCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc
Q 038622 507 FLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 507 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
.| ++.++..++.+|...|++++|+..++++++..|.++.
T Consensus 85 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 85 -DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp -STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred -CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence 46 7889999999999999999999999999999887643
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.7e-11 Score=109.56 Aligned_cols=205 Identities=11% Similarity=-0.008 Sum_probs=153.6
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 038622 312 KLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCK-SRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAA 390 (587)
Q Consensus 312 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 390 (587)
..|++++|.+++++..+.. +. .+.. .++++.|...|.++ +..|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~----------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KT----------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CC----------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-cc----------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 3567788888888776542 11 1222 57788887777765 45678899999999
Q ss_pred HHHHHHHHCCC--C-C--CcchHHHHHHHHHhcCChHHHHHHHHHHHHcC--C-CCC--hHhHHHHHHHHHhcCCHHHHH
Q 038622 391 DIVQNMTSNGC--E-P--DIVTYGTLIGGLCKAGRVEVASKLLRSIQMKG--I-VLT--PQAYNPVIQALFRRKRTTEAM 460 (587)
Q Consensus 391 ~~~~~~~~~~~--~-~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~-~~~--~~~~~~l~~~~~~~g~~~~A~ 460 (587)
..+.++..... . + ....+..++.+|...|++++|+..++++.... . .+. ..++..++.+|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 99998876311 1 1 13478889999999999999999999987641 1 111 3577889999988 9999999
Q ss_pred HHHHHHHhcCCCC-C----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCCHhHH
Q 038622 461 RLFREMMEKADPP-D----ALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGF-LPE----FSSFYMLAEGLVSLGKEETL 530 (587)
Q Consensus 461 ~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A 530 (587)
..|+++++..... + ..++..++..+...|+ +++|+..++++++... .+. ...+..++.++...|++++|
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQK-FDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999862111 1 4567788999999999 9999999999996310 111 33677888899999999999
Q ss_pred HHHHHHHHhcCCCCC
Q 038622 531 VELIDMVMDKAKFSD 545 (587)
Q Consensus 531 ~~~~~~~~~~~~~~~ 545 (587)
+..+++++ ..|...
T Consensus 215 ~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 215 QKCVRESY-SIPGFS 228 (307)
T ss_dssp HHHHHHHT-TSTTST
T ss_pred HHHHHHHh-CCCCCC
Confidence 99999999 887653
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.21 E-value=6.9e-10 Score=95.21 Aligned_cols=131 Identities=12% Similarity=-0.063 Sum_probs=95.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 038622 408 YGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCN 487 (587)
Q Consensus 408 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (587)
+..++..+...|++++|...++++. .|+...+..++.++...|++++|+..|+++++.. +.+...+..++.++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 4456666777777777777777663 3466677777777777888888888887777764 5566677777777777
Q ss_pred CCCCHHHHHHHHHHHHHcC--------------CCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 488 GGGPIGEAVDFVIEMLERG--------------FLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 488 ~~~~~~~A~~~~~~~~~~~--------------~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
.|+ +++|+..++++++.. ..| ...++..++.+|...|++++|+..++++++..|..
T Consensus 84 ~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 84 TEK-YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp TTC-HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred ccc-HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 777 888888888877632 111 23677888888888888888888888888888765
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.21 E-value=8.3e-12 Score=99.17 Aligned_cols=104 Identities=13% Similarity=-0.032 Sum_probs=93.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-Cchhh
Q 038622 472 PPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETS 549 (587)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~ 549 (587)
|.+...+..++..+...|+ +++|+..|+++++. .| ++.+|..++.+|...|++++|+..|+++++.+|.+ ..++.
T Consensus 33 p~~~~~~~~lg~~~~~~g~-~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGR-IEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 3345577788889999999 99999999999984 57 79999999999999999999999999999999987 45899
Q ss_pred hhhhHHHHHHHHHHHHhcchhhhccCchh
Q 038622 550 MVRGFLKIRKFQDALATFGDILDSRMPRK 578 (587)
Q Consensus 550 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 578 (587)
++.+|.+.|++++|+..|+++++..+.++
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999886654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.19 E-value=7e-10 Score=85.46 Aligned_cols=112 Identities=11% Similarity=-0.054 Sum_probs=89.7
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038622 405 IVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRG 484 (587)
Q Consensus 405 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 484 (587)
...+...+..+.+.|++++|++.|+++++..+. +...|..++.++...|++++|+..|+++++.+ |.+...+..++.+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 345667788888888888888888888886543 67788888888888888988988888888875 6677788888888
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 038622 485 LCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGL 521 (587)
Q Consensus 485 ~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 521 (587)
+...|+ +++|++.|+++++ +.| +..+...|+.++
T Consensus 91 ~~~~~~-~~~A~~~~~~al~--l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 91 LVAMRE-WSKAQRAYEDALQ--VDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHTTC-HHHHHHHHHHHHH--HCTTCHHHHHHHHHHC
T ss_pred HHHCCC-HHHHHHHHHHHHH--HCcCCHHHHHHHHHhc
Confidence 888888 8899999988888 456 677777776653
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.5e-10 Score=105.47 Aligned_cols=224 Identities=12% Similarity=0.030 Sum_probs=163.4
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038622 277 SRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCK-LKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAA 355 (587)
Q Consensus 277 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 355 (587)
..|++++|.++++++.+.. +. .+.. .++++.|...|.++ +..|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~----------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KT----------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CC----------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-cc----------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 4578889999999887643 11 1333 58899999888765 34677889999999
Q ss_pred HHHHHHHHcCC---CC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C-CC--CcchHHHHHHHHHhcCChHHHH
Q 038622 356 QLMDQMIMEGL---KP--DKFTYNSLLTYYCRAGDIKRAADIVQNMTSNG--C-EP--DIVTYGTLIGGLCKAGRVEVAS 425 (587)
Q Consensus 356 ~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~-~~--~~~~~~~l~~~~~~~~~~~~a~ 425 (587)
..|.++..... .+ -..++..++.+|...|++++|+..+++.+... . .+ ...++..++.+|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 99999876311 11 13478888999999999999999999887631 1 11 13567888999988 9999999
Q ss_pred HHHHHHHHcCCCC-C----hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHhCCCCHHHH
Q 038622 426 KLLRSIQMKGIVL-T----PQAYNPVIQALFRRKRTTEAMRLFREMMEKAD-PPD----ALTYKHVFRGLCNGGGPIGEA 495 (587)
Q Consensus 426 ~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~~A 495 (587)
..++++....... + ..++..++.++...|++++|+..|+++++... .++ ...+..++.++...|+ +++|
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~-~~~A 214 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRAD-YVAA 214 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCC-HHHH
Confidence 9999998752111 1 35788899999999999999999999998521 122 2245566667778899 9999
Q ss_pred HHHHHHHHHcCCCCCH-HH-----HHHHHHHHHccCCHhHHHH
Q 038622 496 VDFVIEMLERGFLPEF-SS-----FYMLAEGLVSLGKEETLVE 532 (587)
Q Consensus 496 ~~~~~~~~~~~~~p~~-~~-----~~~l~~~~~~~g~~~~A~~ 532 (587)
+..+++++ . .|+. .. ...++..+ ..|+.+.+..
T Consensus 215 ~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 215 QKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999998 4 5654 43 23344444 5677666655
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.17 E-value=6.5e-10 Score=92.11 Aligned_cols=128 Identities=12% Similarity=0.099 Sum_probs=107.0
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhCCCCH--
Q 038622 416 CKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRG-LCNGGGPI-- 492 (587)
Q Consensus 416 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~-- 492 (587)
...|++++|...++++....+. +...|..++.++...|++++|+..|+++++.. |.+...+..++.+ +...|+ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~-~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQ-HMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTT-CCC
T ss_pred hhccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCC-cch
Confidence 4578899999999998886543 67889999999999999999999999999874 6677788888888 678888 8
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCchh
Q 038622 493 GEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDRET 548 (587)
Q Consensus 493 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 548 (587)
++|+..++++++. .| +..++..++.+|...|++++|+..++++++..|.+....
T Consensus 98 ~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALAL--DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999999999985 46 788999999999999999999999999999999875433
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.15 E-value=1.4e-09 Score=88.92 Aligned_cols=131 Identities=15% Similarity=0.189 Sum_probs=101.9
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038622 441 QAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEG 520 (587)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 520 (587)
..+..++..+...|++++|...|+++++.. +.+...+..++..+...|+ +++|+..++++++.. +.++.++..++.+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTEC-YGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 456777888888888888888888888864 5667778888888888888 888888888888743 2367888888888
Q ss_pred HHccCCHhHHHHHHHHHHhcCCCCC-ch--hhhhhhHHHHHHHHHHHHhcchhhhcc
Q 038622 521 LVSLGKEETLVELIDMVMDKAKFSD-RE--TSMVRGFLKIRKFQDALATFGDILDSR 574 (587)
Q Consensus 521 ~~~~g~~~~A~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~A~~~~~~~~~~~ 574 (587)
+...|++++|+..++++++..|... .+ ...+..+...|++++|+..+.+.....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 8888899999999988888888763 33 334444778888888888888776543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.9e-08 Score=90.56 Aligned_cols=223 Identities=12% Similarity=0.074 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc-C-CHHHHHHH
Q 038622 316 IEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSR-RVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRA-G-DIKRAADI 392 (587)
Q Consensus 316 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~A~~~ 392 (587)
.++|+++++.++..+ |.+..+|+.-..++...| .+++++.+++.++.... -+..+|+.-..++... + ++++++.+
T Consensus 70 se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 70 SERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 345555555555554 444455555555555555 35666666666655422 2344455444444444 4 55666666
Q ss_pred HHHHHHCCCCCCcchHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC-------HH
Q 038622 393 VQNMTSNGCEPDIVTYGTLIGGLCKAGRVE--------VASKLLRSIQMKGIVLTPQAYNPVIQALFRRKR-------TT 457 (587)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~ 457 (587)
++.+++.++. +..+|..-..++...|.++ ++++.++++.+.++. +..+|+....++...++ ++
T Consensus 148 ~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~ 225 (349)
T 3q7a_A 148 IHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQ 225 (349)
T ss_dssp HHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHH
Confidence 6666654333 4445544444444444444 777788887776555 66778877777777765 67
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCC-------------------HHHHHHHHHHHHHcC----C-CCCHHH
Q 038622 458 EAMRLFREMMEKADPPDALTYKHVFRGLCNGGGP-------------------IGEAVDFVIEMLERG----F-LPEFSS 513 (587)
Q Consensus 458 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------------------~~~A~~~~~~~~~~~----~-~p~~~~ 513 (587)
++++.+.+++... |.|...|..+...+...|.. ......+...+...+ . .+++.+
T Consensus 226 eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~a 304 (349)
T 3q7a_A 226 DELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLA 304 (349)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHH
Confidence 8888888888764 67777777777777666652 223333333333211 1 247888
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHH-hcCCC
Q 038622 514 FYMLAEGLVSLGKEETLVELIDMVM-DKAKF 543 (587)
Q Consensus 514 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~ 543 (587)
+..|+++|...|+.++|.++++.+. +.+|-
T Consensus 305 l~~l~d~~~~~~~~~~a~~~~~~l~~~~dpi 335 (349)
T 3q7a_A 305 LEYLADSFIEQNRVDDAAKVFEKLSSEYDQM 335 (349)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhhChH
Confidence 8999999999999999999999986 44554
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.13 E-value=4.1e-10 Score=100.91 Aligned_cols=194 Identities=12% Similarity=-0.033 Sum_probs=91.3
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 038622 370 KFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQA 449 (587)
Q Consensus 370 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 449 (587)
...+..++..+...|++++|+..|++++...+. +...+..++.++...|++++|...++++.+..+. +...+..++.+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 334455555555566666666666655553222 4445555666666666666666666666554322 34555666666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhH
Q 038622 450 LFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEET 529 (587)
Q Consensus 450 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 529 (587)
+...|++++|+..|+++++.+ |.+...+...+..... ..++..... .......++......++..+ .|++++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~i~~~l~~l~--~~~~~~ 153 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALR----IAKKKRWNS-IEERRIHQESELHSYLTRLI--AAERER 153 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHH----HHHHHHHHH-HHHTCCCCCCHHHHHHHHHH--HHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHH----HHHHHHHHH-HHHHHHhhhHHHHHHHHHHH--HHHHHH
Confidence 666666666666666665532 1111011111111111 111111111 11111223444444444433 456666
Q ss_pred HHHHHHHHHhcCCCCCc-hhhhhhhHHHH-HHHHHHHHhcchhhhc
Q 038622 530 LVELIDMVMDKAKFSDR-ETSMVRGFLKI-RKFQDALATFGDILDS 573 (587)
Q Consensus 530 A~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~A~~~~~~~~~~ 573 (587)
|++.++++++..|.+.. ...+...+.+. +.+++|...|.++.+.
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 66666666666554422 22222223333 4556666666655553
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=5.9e-08 Score=86.97 Aligned_cols=187 Identities=10% Similarity=0.041 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC-hHHHHHH
Q 038622 351 VEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAG--DIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGR-VEVASKL 427 (587)
Q Consensus 351 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~ 427 (587)
+++++.+++.++...+ -+..+|+.-..++...+ ++++++.++..+++.++. +..+|..-..++...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~P-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 4566666666666432 25555665555555555 366777777777665443 55566666666666666 4677777
Q ss_pred HHHHHHcCCCCChHhHHHHHHHHHhc--------------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhC-----
Q 038622 428 LRSIQMKGIVLTPQAYNPVIQALFRR--------------KRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNG----- 488 (587)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 488 (587)
++++.+.++. +..+|+.....+... +.++++++.+.+++... |.|...|..+-..+...
T Consensus 168 ~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccc
Confidence 7777766544 566666666655544 45788888888888874 77777777666555554
Q ss_pred ------CCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHH---HHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 489 ------GGPIGEAVDFVIEMLERGFLPEFS-SFYMLAE---GLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 489 ------~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
+. ++++++.+.++++ +.|+.. .+..++. .....|..++...++.++.+.+|..
T Consensus 246 ~~~~~~~~-l~~el~~~~elle--~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r 308 (331)
T 3dss_A 246 LSVEKSTV-LQSELESCKELQE--LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 308 (331)
T ss_dssp CCHHHHHH-HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGG
T ss_pred cchHHHHH-HHHHHHHHHHHHh--hCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcch
Confidence 34 7899999999998 457542 2222222 2235688889999999999999975
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.12 E-value=4.6e-10 Score=88.94 Aligned_cols=103 Identities=12% Similarity=-0.082 Sum_probs=92.1
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 038622 440 PQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLA 518 (587)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 518 (587)
...+..++..+...|++++|+..|++++..+ |.+...+..++.++...|+ +++|+..++++++. .| ++..+..++
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~--~p~~~~~~~~lg 93 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGL-YEQALQSYSYGALM--DINEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhc--CCCCcHHHHHHH
Confidence 4667788999999999999999999999875 7788888899999999999 99999999999984 46 788899999
Q ss_pred HHHHccCCHhHHHHHHHHHHhcCCCCCc
Q 038622 519 EGLVSLGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 519 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
.+|...|++++|+..++++++..|.++.
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARALAAAQPA 121 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCcc
Confidence 9999999999999999999999887644
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1.9e-08 Score=90.91 Aligned_cols=165 Identities=13% Similarity=0.058 Sum_probs=119.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CCCc----chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-C----hHhHHH
Q 038622 376 LLTYYCRAGDIKRAADIVQNMTSNGC-EPDI----VTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVL-T----PQAYNP 445 (587)
Q Consensus 376 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~ 445 (587)
.+..+...|++++|..++++...... .|+. ..+..++..+...|++++|+..++++....... + ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667788888888888888876422 1221 123346667777788999999999888742221 2 136888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc-----CCCC-CHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCCCC-HHHH
Q 038622 446 VIQALFRRKRTTEAMRLFREMMEK-----ADPP-DALTYKHVFRGLCNGGGPIGEAVDFVIEMLER----GFLPE-FSSF 514 (587)
Q Consensus 446 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~----~~~p~-~~~~ 514 (587)
++.+|...|++++|+.+|+++++. +..+ ...++..++..+...|+ +++|+.+++++++. +..+. ..++
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~-y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR-YEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999999999999999999998852 1111 22366788888999999 99999999998852 11122 6788
Q ss_pred HHHHHHHHccCC-HhHHHHHHHHHHhcC
Q 038622 515 YMLAEGLVSLGK-EETLVELIDMVMDKA 541 (587)
Q Consensus 515 ~~l~~~~~~~g~-~~~A~~~~~~~~~~~ 541 (587)
..+|.+|.+.|+ +++|...+++++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 899999999994 699999999987644
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.8e-10 Score=91.81 Aligned_cols=114 Identities=7% Similarity=-0.072 Sum_probs=98.1
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 038622 461 RLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMD 539 (587)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 539 (587)
..|++++... |.+...+..++..+...|+ +++|+..++++++. .| ++.++..++.+|...|++++|+..++++++
T Consensus 8 ~~~~~al~~~-p~~~~~~~~~g~~~~~~g~-~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 83 (148)
T 2vgx_A 8 GTIAMLNEIS-SDTLEQLYSLAFNQYQSGX-YEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV 83 (148)
T ss_dssp CSHHHHTTCC-HHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHcCC-HhhHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3466666643 4455677788888999999 99999999999984 46 899999999999999999999999999999
Q ss_pred cCCCC-CchhhhhhhHHHHHHHHHHHHhcchhhhccCchh
Q 038622 540 KAKFS-DRETSMVRGFLKIRKFQDALATFGDILDSRMPRK 578 (587)
Q Consensus 540 ~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 578 (587)
.+|.+ ..+..++.+|...|++++|+..|+++++..+...
T Consensus 84 l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 84 MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXP 123 (148)
T ss_dssp HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCG
T ss_pred cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 99977 4588999999999999999999999998776533
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.06 E-value=2.6e-09 Score=98.35 Aligned_cols=129 Identities=9% Similarity=0.042 Sum_probs=82.4
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 038622 440 PQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPD---------------ALTYKHVFRGLCNGGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 504 (587)
...+..++..+...|++++|+..|+++++.. +.+ ...+..++.++...|+ +++|+..++++++
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~-~~~A~~~~~~al~ 224 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA-FSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Confidence 3455666666666666666666666666643 222 3566666666667776 7777777777776
Q ss_pred cCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHHHHHHH-HHhcchhhh
Q 038622 505 RGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFLKIRKFQDA-LATFGDILD 572 (587)
Q Consensus 505 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A-~~~~~~~~~ 572 (587)
. .| +..++..++.+|...|++++|+..++++++..|.+ ..+..++.++...|++.+| ...|+++..
T Consensus 225 ~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 225 L--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 34 56667777777777777777777777777777665 3356666666677777666 334555443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.1e-09 Score=84.47 Aligned_cols=102 Identities=12% Similarity=0.105 Sum_probs=81.2
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC----C----HH
Q 038622 441 QAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP----E----FS 512 (587)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p----~----~~ 512 (587)
.++..++..+.+.|++++|+..|+++++.. |.+...+..++.++...|+ +++|++.++++++. .| + ..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~-~~~A~~~~~~al~~--~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKK-FAECVQFCEKAVEV--GRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--HHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhh-HHHHHHHHHHHHHh--CcccchhhHHHHH
Confidence 456778888888888888888888888874 6677788888888888888 88888888888863 23 1 24
Q ss_pred HHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc
Q 038622 513 SFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 513 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
++..+|.++...|++++|++.++++++..|+++.
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~ 118 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPEL 118 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHH
Confidence 6778888888899999999999988888776543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.7e-09 Score=83.49 Aligned_cols=117 Identities=12% Similarity=0.089 Sum_probs=88.7
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038622 439 TPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLA 518 (587)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 518 (587)
+...+..++..+...|++++|+..|+++++.. +.+...+..++..+...|+ +++|+..++++++.. +.+..++..++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~-~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLE-FQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTC-HHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 34677788888888888888888888888764 5567777778878888888 888888888888742 23678888888
Q ss_pred HHHHccCCHhHHHHHHHHHHhcCCCCC-chhhhhhhHHHHH
Q 038622 519 EGLVSLGKEETLVELIDMVMDKAKFSD-RETSMVRGFLKIR 558 (587)
Q Consensus 519 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 558 (587)
.++...|++++|+..++++++..|... .+..++.++...|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 888888888888888888888887653 3555555555443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.05 E-value=2e-08 Score=90.79 Aligned_cols=168 Identities=13% Similarity=0.036 Sum_probs=115.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---CC--hHh
Q 038622 373 YNSLLTYYCRAGDIKRAADIVQNMTSNGCEPD-----IVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIV---LT--PQA 442 (587)
Q Consensus 373 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~~ 442 (587)
+...+..+...|++++|...++...+...... ...+..++..+...|++++|...++++...... +. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 33445556666777777777766665422111 012344566677778888888888887754211 11 347
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCC----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CCC-CH
Q 038622 443 YNPVIQALFRRKRTTEAMRLFREMMEK--ADPPD----ALTYKHVFRGLCNGGGPIGEAVDFVIEMLERG----FLP-EF 511 (587)
Q Consensus 443 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~----~~p-~~ 511 (587)
++.++..|...|++++|+..|+++++. ..+.+ ...+..++..+...|+ +++|+.+++++++.. ... -.
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~-y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR-YEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhh-HHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 788899999999999999999998842 11222 1567788888999999 999999999988531 011 16
Q ss_pred HHHHHHHHHHHccCCHhHH-HHHHHHHHhcC
Q 038622 512 SSFYMLAEGLVSLGKEETL-VELIDMVMDKA 541 (587)
Q Consensus 512 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~ 541 (587)
.++..++.+|...|++++| ...+++++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 7888999999999999999 78788887543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.6e-07 Score=84.49 Aligned_cols=231 Identities=10% Similarity=0.039 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C-CHHHHHHHH
Q 038622 282 EEALKLLKEMESSGCARNVVTYNTLIDGFCKLK-RIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKS-R-RVEDAAQLM 358 (587)
Q Consensus 282 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~A~~~~ 358 (587)
++|+++++.++..+ |.+..+|+....++...| .+++++..++.++..+ |.+..+|+.-..++... + ++++++.++
T Consensus 71 e~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 71 ERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 45555555555544 344445555555555555 3555555555555543 44455555544444444 4 555555555
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC-------hHH
Q 038622 359 DQMIMEGLKPDKFTYNSLLTYYCRAGDIK--------RAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGR-------VEV 423 (587)
Q Consensus 359 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~ 423 (587)
++++... +-+...|+.-..+....+.++ +++..++++++.++. |...|.....++...++ +++
T Consensus 149 ~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~e 226 (349)
T 3q7a_A 149 HGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQD 226 (349)
T ss_dssp HHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHH
Confidence 5555432 123444444443333333333 666666666665443 55556665555555554 566
Q ss_pred HHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhcC-----CCCCHHHH
Q 038622 424 ASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRT--------------------TEAMRLFREMMEKA-----DPPDALTY 478 (587)
Q Consensus 424 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~-----~~~~~~~~ 478 (587)
+++.++++....+. +..+|+.+...+.+.|+. .+...+...+...+ ..+....+
T Consensus 227 ELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 305 (349)
T 3q7a_A 227 ELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLAL 305 (349)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHH
Confidence 77777666665443 556666666666655543 22222222222221 13566677
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 038622 479 KHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAE 519 (587)
Q Consensus 479 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 519 (587)
..++..+...|+ .++|.+.++.+.+. .+| ....|...++
T Consensus 306 ~~l~d~~~~~~~-~~~a~~~~~~l~~~-~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 306 EYLADSFIEQNR-VDDAAKVFEKLSSE-YDQMRAGYWEFRRR 345 (349)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHHHHT-TCGGGHHHHHHHHH
T ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHhh-hChHHHHHHHHHHH
Confidence 777888888777 88888888887753 466 5555554443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.7e-09 Score=92.69 Aligned_cols=190 Identities=11% Similarity=-0.065 Sum_probs=134.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHH-------HHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------
Q 038622 347 KSRRVEDAAQLMDQMIMEGLKPDKFTYNSL-------LTYYCRAGDIKRAADIVQNMTSNGCEPD--------------- 404 (587)
Q Consensus 347 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------- 404 (587)
..++...|.+.|.++..... -....|..+ ...+...++..+++..+...+. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP-~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDE-SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhCh-hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 46777777777777777421 133455555 3444444444455554544443 2221
Q ss_pred -------cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--H
Q 038622 405 -------IVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPD--A 475 (587)
Q Consensus 405 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~ 475 (587)
......++.++...|++++|.+.|+.+...+ |+......++..+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1233456778889999999999998887743 333377778888999999999999998776531 121 2
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCC
Q 038622 476 LTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP--EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKF 543 (587)
Q Consensus 476 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 543 (587)
..+..++.++...|+ +++|+..|+++......| .+.....++.++.+.|+.++|...|+++...+|.
T Consensus 172 ~a~~~LG~al~~LG~-~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 172 AAGVAHGVAAANLAL-FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHCCC-HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 356778888999999 999999999998643325 3568889999999999999999999999999997
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.04 E-value=6.6e-10 Score=85.82 Aligned_cols=104 Identities=13% Similarity=0.045 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC--------
Q 038622 475 ALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD-------- 545 (587)
Q Consensus 475 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------- 545 (587)
...+..++..+...|+ +++|+..|+++++. .| ++.++..++.+|.+.|++++|+..++++++..|...
T Consensus 8 A~a~~~lG~~~~~~~~-~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKD-FEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 3456788999999999 99999999999984 56 789999999999999999999999999999887653
Q ss_pred chhhhhhhHHHHHHHHHHHHhcchhhhccCchhhhh
Q 038622 546 RETSMVRGFLKIRKFQDALATFGDILDSRMPRKTFR 581 (587)
Q Consensus 546 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 581 (587)
.+..++.++...|++++|+..|++++...+.|+.+.
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~ 120 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVK 120 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHH
Confidence 245677778889999999999999999887776654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.8e-08 Score=86.25 Aligned_cols=129 Identities=10% Similarity=-0.031 Sum_probs=111.6
Q ss_pred hhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038622 21 STFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGF 100 (587)
Q Consensus 21 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (587)
..+..+...+...|++++|+..|+.+. ++++.++..++..+...|++++|+..++++...+ +.+...+..++.++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 345677888999999999999999886 5688899999999999999999999999999886 66778899999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCh----------------hhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 038622 101 CKEGRIEDALSFIQEMVSEGFNPDQ----------------FTYNTLVNGLCKVGHVKQALEVMDMMLQEG 155 (587)
Q Consensus 101 ~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 155 (587)
...|++++|+..|+++++.. +.+. .++..++.++...|++++|.+.|+.+.+..
T Consensus 82 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 99999999999999998863 2222 678888899999999999999999998863
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.04 E-value=8.5e-09 Score=84.23 Aligned_cols=130 Identities=14% Similarity=-0.027 Sum_probs=106.2
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038622 406 VTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGL 485 (587)
Q Consensus 406 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 485 (587)
..+..++..+...|++++|...++++....+. +...+..++.++...|++++|+..++++++.. +.+...+..++..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 45677788888899999999999988886433 57788899999999999999999999999874 66778888888889
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCCC-CHHHH--HHHHHHHHccCCHhHHHHHHHHHHhc
Q 038622 486 CNGGGPIGEAVDFVIEMLERGFLP-EFSSF--YMLAEGLVSLGKEETLVELIDMVMDK 540 (587)
Q Consensus 486 ~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~ 540 (587)
...|+ +++|...++++++. .| +...+ ..++..+...|++++|+..+++....
T Consensus 92 ~~~~~-~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 92 MALGK-FRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHTTC-HHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcc-HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 99999 99999999999984 35 56666 44455588889999999999877543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.03 E-value=4e-10 Score=97.84 Aligned_cols=188 Identities=8% Similarity=-0.131 Sum_probs=146.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCcchHHHH-------HHHHHhcCChHHHHHHHHHHHHcCCCCC---------------
Q 038622 382 RAGDIKRAADIVQNMTSNGCEPDIVTYGTL-------IGGLCKAGRVEVASKLLRSIQMKGIVLT--------------- 439 (587)
Q Consensus 382 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 439 (587)
..++...|.+.|.++...++. ....|..+ ...+...++..+++..+++.... .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence 579999999999999986544 56777777 56666666667777766666552 221
Q ss_pred -------hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC--C
Q 038622 440 -------PQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP--E 510 (587)
Q Consensus 440 -------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p--~ 510 (587)
......++..+...|++++|.++|..+... .|+......++..+.+.++ +++|+..++++.... .| .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r-~~dA~~~l~~a~~~~-d~~~~ 170 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAER-WTDVIDQVKSAGKWP-DKFLA 170 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTC-HHHHHHHHTTGGGCS-CHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCC-HHHHHHHHHHhhccC-CcccH
Confidence 133455778899999999999999998875 3444455566667889999 999999999776521 22 1
Q ss_pred HHHHHHHHHHHHccCCHhHHHHHHHHHHhcC--CC--CCchhhhhhhHHHHHHHHHHHHhcchhhhccCc
Q 038622 511 FSSFYMLAEGLVSLGKEETLVELIDMVMDKA--KF--SDRETSMVRGFLKIRKFQDALATFGDILDSRMP 576 (587)
Q Consensus 511 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 576 (587)
..++..++.++...|++++|+..|+++...+ |. .+.....+.++.+.|+.++|...|+++....|.
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 3578999999999999999999999998544 22 135788899999999999999999999998876
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.03 E-value=9.3e-09 Score=92.98 Aligned_cols=167 Identities=10% Similarity=0.003 Sum_probs=128.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-----HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CCC--HH
Q 038622 407 TYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTP-----QAYNPVIQALFRRKRTTEAMRLFREMMEKAD---PPD--AL 476 (587)
Q Consensus 407 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~ 476 (587)
.+...+..+...|++++|.+.+++..+....... ..+..++..+...|++++|+..++++++... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4556677888999999999999998875332111 2345577778889999999999999987421 122 44
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCCC-C----HHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC------
Q 038622 477 TYKHVFRGLCNGGGPIGEAVDFVIEMLER-GFLP-E----FSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS------ 544 (587)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~-~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------ 544 (587)
.+..++..+...|+ +++|+.+++++++. ...| + ..++..++.+|...|++++|+..++++++..+..
T Consensus 157 ~~~~lg~~y~~~~~-~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 157 IENAIANIYAENGY-LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 77888999999999 99999999999831 0122 2 2588899999999999999999999998765431
Q ss_pred -CchhhhhhhHHHHHHHHHH-HHhcchhhhcc
Q 038622 545 -DRETSMVRGFLKIRKFQDA-LATFGDILDSR 574 (587)
Q Consensus 545 -~~~~~~~~~~~~~~~~~~A-~~~~~~~~~~~ 574 (587)
..+..++.+|...|++++| ...|++++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 2357788889999999999 77788877654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.02 E-value=4.6e-09 Score=81.22 Aligned_cols=98 Identities=18% Similarity=0.237 Sum_probs=85.8
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 038622 440 PQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLA 518 (587)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 518 (587)
...+...+..+...|++++|+..|+++++.. |.+...+..++.++...|+ +++|+..++++++. .| ++.++..++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~--~p~~~~~~~~lg 79 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMS-FPEAIADCNKAIEK--DPNFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcC-HHHHHHHHHHHHHh--CCCcHHHHHHHH
Confidence 4567788888999999999999999999875 6678888888989999998 99999999999984 46 688899999
Q ss_pred HHHHccCCHhHHHHHHHHHHhcC
Q 038622 519 EGLVSLGKEETLVELIDMVMDKA 541 (587)
Q Consensus 519 ~~~~~~g~~~~A~~~~~~~~~~~ 541 (587)
.++...|++++|+..++++++..
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHhC
Confidence 99999999999999999999888
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=5.3e-10 Score=94.58 Aligned_cols=153 Identities=12% Similarity=0.069 Sum_probs=100.8
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH----------------HHHH
Q 038622 416 CKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDA----------------LTYK 479 (587)
Q Consensus 416 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~ 479 (587)
...|+++++.+.++......+. ....+..++..+...|++++|+..|.++++.. +.+. ..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEEKVQ-SAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp -------CCCSGGGCCHHHHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHH
Confidence 3445555555555432221111 23456677777888888888888888888752 2222 6677
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC-chhhhhhhHHHH
Q 038622 480 HVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD-RETSMVRGFLKI 557 (587)
Q Consensus 480 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 557 (587)
.++.++...|+ +++|+..++++++. .| +..++..++.+|...|++++|+..++++++..|... .+..+..++...
T Consensus 93 ~la~~~~~~~~-~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 93 NLATCYNKNKD-YPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-HHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 78888888888 99999999999984 45 788889999999999999999999999999988763 467777788888
Q ss_pred HHHHHHH-Hhcchhhhc
Q 038622 558 RKFQDAL-ATFGDILDS 573 (587)
Q Consensus 558 ~~~~~A~-~~~~~~~~~ 573 (587)
++..++. ..|+++...
T Consensus 170 ~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 170 KEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHC------------
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 8888777 555655543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-08 Score=83.40 Aligned_cols=104 Identities=12% Similarity=0.085 Sum_probs=91.2
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 038622 439 TPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYML 517 (587)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l 517 (587)
+...+..++..+...|++++|+..|+++++.. +.+...+..++.++...|+ +++|+..++++++. .| +..++..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~--~p~~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQ-HEKAAEDAELATVV--DPKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 34678888999999999999999999999875 6678888889999999999 99999999999984 46 68899999
Q ss_pred HHHHHccCCHhHHHHHHHHHHhcCCCCCc
Q 038622 518 AEGLVSLGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 518 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
+.+|...|++++|+..++++++..|.+..
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 99999999999999999999999988744
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.01 E-value=2.3e-07 Score=83.82 Aligned_cols=164 Identities=12% Similarity=0.031 Sum_probs=117.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHh----hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----cchHHH
Q 038622 341 LIDGLCKSRRVEDAAQLMDQMIMEGL-KPDKF----TYNSLLTYYCRAGDIKRAADIVQNMTSNGCE-PD----IVTYGT 410 (587)
Q Consensus 341 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~ 410 (587)
.+..+...|++++|...++++..... .|+.. .+..++..+...+++++|+..++++...... ++ ..++..
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35567778888888888888876421 12211 2334666677778889999999888874222 12 125788
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc-----CCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC-HHHHH
Q 038622 411 LIGGLCKAGRVEVASKLLRSIQMK-----GIVL-TPQAYNPVIQALFRRKRTTEAMRLFREMMEK----ADPPD-ALTYK 479 (587)
Q Consensus 411 l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~ 479 (587)
++.+|...|++++|..+++++.+. +..+ ...++..++.+|...|++++|+..++++++. +..+. ...+.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888899999999999999888742 1111 1247788999999999999999999988863 11222 56778
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH
Q 038622 480 HVFRGLCNGGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 480 ~l~~~~~~~~~~~~~A~~~~~~~~~ 504 (587)
.++.++...|+++++|.+.++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8888888899536999999999875
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=5.2e-09 Score=81.50 Aligned_cols=116 Identities=14% Similarity=0.141 Sum_probs=78.7
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 038622 440 PQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLA 518 (587)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 518 (587)
...+..++..+...|++++|+..+++++... +.+...+..++..+...|+ +++|+..++++++. .| ++..+..++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~--~~~~~~~~~~~~ 87 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGN-YAGAVQDCERAICI--DPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhc-hHHHHHHHHHHHhc--CccCHHHHHHHH
Confidence 3456667777777777777777777777653 4556666677777777777 77777777777763 34 566777777
Q ss_pred HHHHccCCHhHHHHHHHHHHhcCCCCC-chhhhhhhHHHHHH
Q 038622 519 EGLVSLGKEETLVELIDMVMDKAKFSD-RETSMVRGFLKIRK 559 (587)
Q Consensus 519 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 559 (587)
.++...|++++|...++++++..|... .+..++.++...|+
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 777777777777777777777776542 34555555555443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=7.4e-07 Score=79.91 Aligned_cols=196 Identities=8% Similarity=-0.033 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC-HHHHHHH
Q 038622 316 IEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSR--RVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGD-IKRAADI 392 (587)
Q Consensus 316 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~ 392 (587)
+++++..++.+...+ |.+..+|+.-..++...+ ++++++.++++++.... -+...|+.-..+....|. +++++..
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 345555555555443 445555555555554444 25556666666655422 244455554444555555 3556666
Q ss_pred HHHHHHCCCCCCcchHHHHHHHHHhc--------------CChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc-----
Q 038622 393 VQNMTSNGCEPDIVTYGTLIGGLCKA--------------GRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRR----- 453 (587)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 453 (587)
+..+++.++. |...|.....++... +.++++++.+..+....+. +..+|+.+...+...
T Consensus 168 ~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccc
Confidence 6665554433 444454444444333 3467778888887776444 566776665555554
Q ss_pred ------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH---HHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 038622 454 ------KRTTEAMRLFREMMEKADPPDALTYKHVFRG---LCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAE 519 (587)
Q Consensus 454 ------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 519 (587)
+.++++++.+.++++.. |.+...+..++.. ....|. .++....+.++++ ++| ...-|..+..
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~-pd~~w~l~~~~~~~~~~~~~~~-~~~~~~~l~~l~~--~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELE-PENKWCLLTIILLMRALDPLLY-EKETLQYFSTLKA--VDPMRAAYLDDLRS 317 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCTTTT-HHHHHHHHHHHHH--HCGGGHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhC-cccchHHHHHHHHHHhhccccc-HHHHHHHHHHHHH--hCcchhhHHHHHHH
Confidence 45789999999999863 4443333333221 123455 8899999999998 668 5555555444
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.00 E-value=1.2e-08 Score=78.66 Aligned_cols=102 Identities=16% Similarity=0.291 Sum_probs=72.8
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038622 440 PQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAE 519 (587)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 519 (587)
...+..++..+...|++++|.+.++++++.. +.+...+..++..+...|+ +++|+..++++++.. +.+...+..++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~-~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGD-YDEAIEYYQKALELD-PNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhC-CccHHHHHHHHH
Confidence 4566677777777777777777777777653 4556666677777777777 777777777777642 236667777777
Q ss_pred HHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 520 GLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 520 ~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
++...|++++|...++++++..|..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~ 110 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPNN 110 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 7777777777777777777777655
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=3.6e-09 Score=80.79 Aligned_cols=97 Identities=10% Similarity=0.005 Sum_probs=51.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 038622 443 YNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGL 521 (587)
Q Consensus 443 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 521 (587)
+..++..+...|++++|+..|+++++.. |.+...+..++.++...|+ +++|+..++++++. .| ++.++..++.+|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l--~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEK-DGLAIIALNHARML--DPKDIAVHAALAVSH 95 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 4445555555555555555555555543 4455555555555555555 55555555555552 34 455555555555
Q ss_pred HccCCHhHHHHHHHHHHhcCCC
Q 038622 522 VSLGKEETLVELIDMVMDKAKF 543 (587)
Q Consensus 522 ~~~g~~~~A~~~~~~~~~~~~~ 543 (587)
...|++++|+..++++++.+|.
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC----
T ss_pred HHcCCHHHHHHHHHHHHHhCcC
Confidence 5555555555555555555553
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.98 E-value=9.5e-09 Score=94.58 Aligned_cols=96 Identities=8% Similarity=-0.021 Sum_probs=82.9
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 038622 440 PQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLA 518 (587)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 518 (587)
...|..++.++...|++++|+..++++++.. |.+...+..++.++...|+ +++|+..|+++++. .| +..++..++
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l--~P~~~~a~~~l~ 271 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVND-FELARADFQKVLQL--YPNNKAAKTQLA 271 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHH--CCCCHHHHHHHH
Confidence 4688899999999999999999999999975 6778888899999999999 99999999999984 56 788899999
Q ss_pred HHHHccCCHhHH-HHHHHHHHh
Q 038622 519 EGLVSLGKEETL-VELIDMVMD 539 (587)
Q Consensus 519 ~~~~~~g~~~~A-~~~~~~~~~ 539 (587)
.++...|++++| ...++++..
T Consensus 272 ~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 272 VCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988 456666654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=4.3e-09 Score=80.32 Aligned_cols=97 Identities=10% Similarity=-0.032 Sum_probs=77.3
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHH
Q 038622 478 YKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFL 555 (587)
Q Consensus 478 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~ 555 (587)
+..++..+...|+ +++|+..++++++. .| +..++..++.++...|++++|+..++++++.+|.. +.+..++.+|.
T Consensus 20 ~~~~g~~~~~~g~-~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLAN-LAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTC-HHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4556667788888 99999999998884 46 78888889999999999999999999999988876 45788888888
Q ss_pred HHHHHHHHHHhcchhhhccCch
Q 038622 556 KIRKFQDALATFGDILDSRMPR 577 (587)
Q Consensus 556 ~~~~~~~A~~~~~~~~~~~~~~ 577 (587)
..|++++|+..|+++++..+..
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-----
T ss_pred HcCCHHHHHHHHHHHHHhCcCC
Confidence 9999999999999888876544
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.3e-09 Score=90.37 Aligned_cols=126 Identities=8% Similarity=0.087 Sum_probs=107.4
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHccCCH-
Q 038622 450 LFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEG-LVSLGKE- 527 (587)
Q Consensus 450 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~- 527 (587)
+...|++++|+..++++++.. |.+...+..++..+...|+ +++|+..++++++.+ +.++..+..++.+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQND-YSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcc
Confidence 345789999999999999875 6788889999999999999 999999999999843 3378899999999 8899999
Q ss_pred -hHHHHHHHHHHhcCCCC-CchhhhhhhHHHHHHHHHHHHhcchhhhccCchh
Q 038622 528 -ETLVELIDMVMDKAKFS-DRETSMVRGFLKIRKFQDALATFGDILDSRMPRK 578 (587)
Q Consensus 528 -~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 578 (587)
++|+..++++++..|.. ..+..++.+|...|++++|+..|+++++..+...
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 99999999999999986 4578899999999999999999999999886653
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.97 E-value=8.9e-10 Score=87.27 Aligned_cols=113 Identities=10% Similarity=-0.062 Sum_probs=93.9
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhc
Q 038622 462 LFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDK 540 (587)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 540 (587)
.|++++..+ |.+...+..++..+...|+ +++|+..++++++. .| ++.++..++.+|...|++++|+..++++++.
T Consensus 6 ~l~~al~~~-p~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 81 (142)
T 2xcb_A 6 TLAMLRGLS-EDTLEQLYALGFNQYQAGK-WDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM 81 (142)
T ss_dssp ---CCTTCC-HHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHcCC-HHHHHHHHHHHHHHHHHcc-HHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344444432 3345566778888999999 99999999999984 46 8999999999999999999999999999999
Q ss_pred CCCCC-chhhhhhhHHHHHHHHHHHHhcchhhhccCchh
Q 038622 541 AKFSD-RETSMVRGFLKIRKFQDALATFGDILDSRMPRK 578 (587)
Q Consensus 541 ~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 578 (587)
+|.+. .+..++.+|...|++++|+..|+++++..+...
T Consensus 82 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 82 DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP 120 (142)
T ss_dssp CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 99874 578999999999999999999999998876443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.97 E-value=1.3e-08 Score=91.08 Aligned_cols=164 Identities=7% Similarity=-0.055 Sum_probs=118.2
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038622 404 DIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFR 483 (587)
Q Consensus 404 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 483 (587)
+...+..++..+...|++++|...++++....+. +...+..++.++...|++++|+..++++++.+ |.+...+..++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4556778889999999999999999999986443 67888999999999999999999999999874 667788888999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc-hhhhhhhHHHHHHHH
Q 038622 484 GLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR-ETSMVRGFLKIRKFQ 561 (587)
Q Consensus 484 ~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 561 (587)
++...|+ +++|+..++++++. .| +...+...++... +..++..+........+.... ...+. .+..|+++
T Consensus 81 ~~~~~g~-~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~--~l~~~~~~ 152 (281)
T 2c2l_A 81 CQLEMES-YDEAIANLQRAYSL--AKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLT--RLIAAERE 152 (281)
T ss_dssp HHHHTTC-HHHHHHHHHHHHHH--HHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHH--HHHHHHHH
T ss_pred HHHHcCC-HHHHHHHHHHHHHh--CccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHH--HHHHHHHH
Confidence 9999999 99999999999873 34 2211212222222 122333333333334444333 33332 33479999
Q ss_pred HHHHhcchhhhccCch
Q 038622 562 DALATFGDILDSRMPR 577 (587)
Q Consensus 562 ~A~~~~~~~~~~~~~~ 577 (587)
+|++.++++++..+..
T Consensus 153 ~A~~~~~~al~~~p~~ 168 (281)
T 2c2l_A 153 RELEECQRNHEGHEDD 168 (281)
T ss_dssp HHHTTTSGGGTTTSCH
T ss_pred HHHHHHHhhhccccch
Confidence 9999999999887644
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.2e-08 Score=79.62 Aligned_cols=118 Identities=10% Similarity=-0.042 Sum_probs=94.8
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038622 404 DIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFR 483 (587)
Q Consensus 404 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 483 (587)
+...+..++..+...|++++|...++++.+..+. +...+..++.++...|++++|+..++++++.. +.+...+..++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 3456777888888888999999888888876433 56788888888888999999999999988864 667778888888
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCC
Q 038622 484 GLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGK 526 (587)
Q Consensus 484 ~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 526 (587)
.+...|+ +++|++.++++++. .| +...+..++.++...|+
T Consensus 93 ~~~~~~~-~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKD-YTKAMDVYQKALDL--DSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTC-HHHHHHHHHHHHHH--CGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhh-HHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhcC
Confidence 8888888 99999999998874 45 56777888888877664
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.96 E-value=6.3e-09 Score=88.36 Aligned_cols=160 Identities=16% Similarity=-0.057 Sum_probs=96.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CChHhHHHHHHHHHhcCCH
Q 038622 382 RAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMK----GIV-LTPQAYNPVIQALFRRKRT 456 (587)
Q Consensus 382 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~ 456 (587)
..|++++|...++.+... .......+..++..+...|++++|...++++... +.. .....+..++..+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 456666666644443321 2223455666666677777777777777666552 111 1224566777777777888
Q ss_pred HHHHHHHHHHHhc--CCCCC----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccC
Q 038622 457 TEAMRLFREMMEK--ADPPD----ALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGF-LPE----FSSFYMLAEGLVSLG 525 (587)
Q Consensus 457 ~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g 525 (587)
++|...++++++. ..+.+ ...+..++..+...|+ +++|...++++++..- .++ ..++..++.++...|
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGD-LAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 8887777777663 11112 2345566667777777 8888888877764210 112 234567788888888
Q ss_pred CHhHHHHHHHHHHhcCCC
Q 038622 526 KEETLVELIDMVMDKAKF 543 (587)
Q Consensus 526 ~~~~A~~~~~~~~~~~~~ 543 (587)
++++|...++++++....
T Consensus 162 ~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 162 NLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 888888888887765543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.9e-08 Score=78.24 Aligned_cols=118 Identities=14% Similarity=-0.008 Sum_probs=94.3
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038622 405 IVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRG 484 (587)
Q Consensus 405 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 484 (587)
...+..++..+...|++++|...++++....+. +...+..++.++...|++++|+..++++++.. +.+...+..++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 456677778888888888888888888876433 56778888888888899999999998888864 5667778888888
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCH
Q 038622 485 LCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKE 527 (587)
Q Consensus 485 ~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 527 (587)
+...|+ +++|...++++++. .| +...+..++.++...|++
T Consensus 90 ~~~~~~-~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNK-HVEAVAYYKKALEL--DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTC-HHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCC-HHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHhcC
Confidence 888888 99999999998874 45 677888888888887765
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.95 E-value=2.8e-08 Score=76.47 Aligned_cols=116 Identities=16% Similarity=0.207 Sum_probs=88.8
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038622 405 IVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRG 484 (587)
Q Consensus 405 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 484 (587)
...+..++..+...|++++|.++++++....+. +...+..++..+...|++++|+..++++.+.. +.+...+..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 456677777888888888888888888775432 56677888888888888888888888888764 5667777788888
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccC
Q 038622 485 LCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLG 525 (587)
Q Consensus 485 ~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 525 (587)
+...|+ +++|...++++++. .| ++..+..++.++...|
T Consensus 87 ~~~~~~-~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGD-YDEAIEYYQKALEL--DPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcC-HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhcc
Confidence 888888 88888888888874 35 6777777777776544
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.8e-08 Score=79.16 Aligned_cols=101 Identities=14% Similarity=0.107 Sum_probs=90.3
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 038622 439 TPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYML 517 (587)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l 517 (587)
+...+..++..+...|++++|+..|++++... |.+...+..++.++...|+ +++|+..++++++. .| ++.++..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~--~p~~~~~~~~l 83 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQ-PEQALADCRRALEL--DGQSVKAHFFL 83 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHh--CchhHHHHHHH
Confidence 56788899999999999999999999999875 6678888889999999999 99999999999984 45 78899999
Q ss_pred HHHHHccCCHhHHHHHHHHHHhcCCC
Q 038622 518 AEGLVSLGKEETLVELIDMVMDKAKF 543 (587)
Q Consensus 518 ~~~~~~~g~~~~A~~~~~~~~~~~~~ 543 (587)
+.++...|++++|+..++++++..|.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 99999999999999999999988876
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.91 E-value=5e-09 Score=89.01 Aligned_cols=159 Identities=13% Similarity=0.008 Sum_probs=120.6
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC-CCCHHHHHHHHHHHHhCCC
Q 038622 416 CKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEK----AD-PPDALTYKHVFRGLCNGGG 490 (587)
Q Consensus 416 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~ 490 (587)
...|++++|.+.++.+... +......+..++..+...|++++|...++++++. +. +.....+..++..+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4679999999966655442 3335678899999999999999999999999872 11 2234567788888999999
Q ss_pred CHHHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-C------chhhhhhhHHHH
Q 038622 491 PIGEAVDFVIEMLER----GFLP--EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-D------RETSMVRGFLKI 557 (587)
Q Consensus 491 ~~~~A~~~~~~~~~~----~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~------~~~~~~~~~~~~ 557 (587)
+++|...++++++. +-.| ...++..++.++...|++++|...++++++..+.. + ....++.++...
T Consensus 82 -~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 82 -WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp -HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 99999999998863 1012 24567889999999999999999999998654322 1 136778889999
Q ss_pred HHHHHHHHhcchhhhccCc
Q 038622 558 RKFQDALATFGDILDSRMP 576 (587)
Q Consensus 558 ~~~~~A~~~~~~~~~~~~~ 576 (587)
|++++|...++++++....
T Consensus 161 g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 161 KNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHH
Confidence 9999999999998876543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.8e-08 Score=74.73 Aligned_cols=103 Identities=17% Similarity=0.108 Sum_probs=83.9
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC--CHHHHHH
Q 038622 439 TPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP--EFSSFYM 516 (587)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p--~~~~~~~ 516 (587)
+...+..++..+...|++++|+..++++++.. +.+...+..++..+...|+ +++|+..++++++.. +. +..++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~a~~~~-~~~~~~~~~~~ 81 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLER-YEEAVDCYNYVINVI-EDEYNKDVWAA 81 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTS-CCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhC-cccchHHHHHH
Confidence 44667778888888888888888888888864 5667777888888888888 899999999888743 33 5778888
Q ss_pred HHHHHHcc-CCHhHHHHHHHHHHhcCCCC
Q 038622 517 LAEGLVSL-GKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 517 l~~~~~~~-g~~~~A~~~~~~~~~~~~~~ 544 (587)
++.++... |++++|++.++++++..|.+
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 88999999 99999999999988888765
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.90 E-value=1.7e-09 Score=91.44 Aligned_cols=130 Identities=9% Similarity=-0.069 Sum_probs=88.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---------------ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 038622 407 TYGTLIGGLCKAGRVEVASKLLRSIQMKGIVL---------------TPQAYNPVIQALFRRKRTTEAMRLFREMMEKAD 471 (587)
Q Consensus 407 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 471 (587)
.+..++..+...|++++|...|+++....+.. ....+..++.++...|++++|+..++++++..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 34444555555555555555555555432110 12677888999999999999999999999874
Q ss_pred CCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHH-HHHHHHHhc
Q 038622 472 PPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLV-ELIDMVMDK 540 (587)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~ 540 (587)
+.+...+..++.++...|+ +++|+..++++++. .| +..++..++.++...|+.+++. ..++.+...
T Consensus 119 p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGF-LEEAKENLYKAASL--NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred cccHHHHHHHHHHHHHccc-HHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6677888888888999999 99999999999984 46 7888888888888888887777 555555443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.89 E-value=3.4e-08 Score=76.21 Aligned_cols=96 Identities=13% Similarity=-0.015 Sum_probs=71.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038622 406 VTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGL 485 (587)
Q Consensus 406 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 485 (587)
..+..++..+...|++++|+..|+++.+..+. +...|..++.++...|++++|+..++++++.+ |.+...+..++.++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 45666677777778888888888777775433 56777778888888888888888888887764 55667777777777
Q ss_pred HhCCCCHHHHHHHHHHHHH
Q 038622 486 CNGGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 486 ~~~~~~~~~A~~~~~~~~~ 504 (587)
...|+ +++|+..++++++
T Consensus 83 ~~~~~-~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKE-YASALETLDAART 100 (126)
T ss_dssp HHTTC-HHHHHHHHHHHHH
T ss_pred HHHhC-HHHHHHHHHHHHH
Confidence 77787 8888888888776
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1.9e-08 Score=78.22 Aligned_cols=108 Identities=8% Similarity=0.126 Sum_probs=82.4
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-C-------H
Q 038622 440 PQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-E-------F 511 (587)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~-------~ 511 (587)
...+..++..+...|++++|+..|+++++.. +.+...+..++..+...|+ +++|...++++++.. | + .
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~--~~~~~~~~~~~ 79 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGD-YNKCRELCEKAIEVG--RENREDYRQIA 79 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHH--HHSTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhhc--cccchhHHHHH
Confidence 3566777888888888888888888888764 5667777778888888888 888888888888632 3 2 6
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCchhhhh
Q 038622 512 SSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDRETSMV 551 (587)
Q Consensus 512 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 551 (587)
.++..++.++...|++++|...++++++..|.++....+.
T Consensus 80 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~ 119 (131)
T 1elr_A 80 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 7788888888888888899888888888877543344433
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.88 E-value=4.8e-08 Score=74.24 Aligned_cols=102 Identities=11% Similarity=0.077 Sum_probs=81.1
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 038622 440 PQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLA 518 (587)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 518 (587)
...+..++..+...|++++|...+++++... |.+...+..++..+...|+ +++|...++++++. .| ++..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~--~~~~~~~~~~~a 79 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGD-YQKAYEDGCKTVDL--KPDWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHh--CcccHHHHHHHH
Confidence 4567777888888888888888888888764 5567777778888888888 88888888888874 34 677888888
Q ss_pred HHHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 519 EGLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 519 ~~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
.++...|++++|...++++++..|.+.
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~~~~~ 106 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKHEANNP 106 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHhhHHHHHHHHHHHHHcCCCCH
Confidence 888888888888888888888887653
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.87 E-value=1.3e-08 Score=79.39 Aligned_cols=103 Identities=17% Similarity=0.071 Sum_probs=84.3
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------CH-----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---
Q 038622 441 QAYNPVIQALFRRKRTTEAMRLFREMMEKADPP-------DA-----LTYKHVFRGLCNGGGPIGEAVDFVIEMLER--- 505 (587)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~-----~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~--- 505 (587)
..+...+..+...|++++|+..|+++++.. |. +. ..|...+.++...|+ +++|+..++++++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~-p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr-~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEIS-HTMPPEEAFDHAGFDAFCHAGLAEALAGLRS-FDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCCcchhhhhhccchHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhhhc
Confidence 455667777888888888888888888753 22 23 278888989999999 99999999999983
Q ss_pred --CCCC-CHHHH----HHHHHHHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 506 --GFLP-EFSSF----YMLAEGLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 506 --~~~p-~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
.+.| +..+| ..++.++...|++++|+..|+++++..|...
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 1167 57788 9999999999999999999999999998763
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.85 E-value=4.2e-09 Score=101.81 Aligned_cols=122 Identities=16% Similarity=0.212 Sum_probs=95.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 038622 443 YNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGL 521 (587)
Q Consensus 443 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 521 (587)
+..++..+...|++++|++.|+++++.. |.+...+..++.++...|+ +++|++.++++++. .| +..++..++.+|
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l--~p~~~~~~~~lg~~~ 84 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTEC-YGYALGDATRAIEL--DKKYIKGYYRRAASN 84 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHS--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 4445566777889999999999998874 6667888888888888888 99999999999884 56 688888899999
Q ss_pred HccCCHhHHHHHHHHHHhcCCCCC-chhhhhhh--HHHHHHHHHHHHhcc
Q 038622 522 VSLGKEETLVELIDMVMDKAKFSD-RETSMVRG--FLKIRKFQDALATFG 568 (587)
Q Consensus 522 ~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~A~~~~~ 568 (587)
...|++++|++.++++++..|... .+..++.+ +.+.|++++|++.++
T Consensus 85 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999998888763 45566666 778899999998888
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=2e-08 Score=98.75 Aligned_cols=171 Identities=10% Similarity=-0.036 Sum_probs=133.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 038622 385 DIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGR----------VEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRK 454 (587)
Q Consensus 385 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 454 (587)
..++|+..++.++..++. +..+|+.-..++...|+ ++++++.++++.+.+++ +..+|+.-..++...|
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence 345678888888875443 45666666666666666 88999999999887665 7788998899999988
Q ss_pred --CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcc-------
Q 038622 455 --RTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSL------- 524 (587)
Q Consensus 455 --~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~------- 524 (587)
++++++..++++++.+ +.+...|..-..++...|..++++++++.++++. .| +..+|...+.++.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~--~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--TCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--CCCCccHHHHHHHHHHhhccccccc
Confidence 6799999999999986 7788889888888888883389999999999874 46 788888888887764
Q ss_pred -------CCHhHHHHHHHHHHhcCCCCCc-hhhhhhhHHHHHHH
Q 038622 525 -------GKEETLVELIDMVMDKAKFSDR-ETSMVRGFLKIRKF 560 (587)
Q Consensus 525 -------g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 560 (587)
+.+++|++.+++++..+|.+.. |+.+...+.+.+..
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCc
Confidence 5678999999999999998754 65555555555543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=1.5e-07 Score=71.40 Aligned_cols=112 Identities=12% Similarity=-0.090 Sum_probs=78.9
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038622 405 IVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRG 484 (587)
Q Consensus 405 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 484 (587)
...+..++..+...|++++|...++++....+. +...+..++.++...|++++|...++++++.. |.+...+..++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 345666677777777888888777777765332 56677777777778888888888888877764 5566677777777
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 038622 485 LCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGL 521 (587)
Q Consensus 485 ~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 521 (587)
+...|+ +++|.+.++++++. .| ++..+..++.+.
T Consensus 82 ~~~~~~-~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLNR-FEEAKRTYEEGLKH--EANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTTC-HHHHHHHHHHHHTT--CTTCHHHHHHHHHHH
T ss_pred HHHHhh-HHHHHHHHHHHHHc--CCCCHHHHHHHHHhh
Confidence 777777 88888888887763 45 566666555543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.81 E-value=3.1e-08 Score=80.44 Aligned_cols=102 Identities=19% Similarity=0.236 Sum_probs=81.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhc--------C---------CCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 038622 441 QAYNPVIQALFRRKRTTEAMRLFREMMEK--------A---------DPPDALTYKHVFRGLCNGGGPIGEAVDFVIEML 503 (587)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~ 503 (587)
..+...+..+...|++++|+..|.+++.. . .+.+...+..++.++...|+ +++|+..+++++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~-~~~A~~~~~~al 90 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGD-LHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHH
Confidence 45566677777777777777777777764 0 02334567788888899999 999999999999
Q ss_pred HcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 504 ERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 504 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
+. .| ++.++..++.+|...|++++|+..++++++.+|.+.
T Consensus 91 ~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 91 KR--EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred hc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 84 46 788999999999999999999999999999998764
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.81 E-value=8.1e-08 Score=74.42 Aligned_cols=100 Identities=15% Similarity=0.124 Sum_probs=77.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-C---HHHH
Q 038622 442 AYNPVIQALFRRKRTTEAMRLFREMMEKADPPDA---LTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-E---FSSF 514 (587)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~---~~~~ 514 (587)
.+..++..+...|++++|+..|+++++.. |.+. ..+..++.++...|+ +++|+..++++++. .| + +.++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~-~~~A~~~~~~~~~~--~p~~~~~~~~~ 79 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRN-FQLAEAQFRDLVSR--YPTHDKAAGGL 79 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTSTTHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHH--CCCCcccHHHH
Confidence 45567777888888888888888888753 3333 466677778888888 88888888888874 34 4 6778
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 515 YMLAEGLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 515 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
..++.++...|++++|+..++++++..|.++
T Consensus 80 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 110 (129)
T 2xev_A 80 LKLGLSQYGEGKNTEAQQTLQQVATQYPGSD 110 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTSH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCh
Confidence 8888888889999999999998888888653
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.80 E-value=7.8e-08 Score=92.58 Aligned_cols=121 Identities=8% Similarity=0.018 Sum_probs=76.7
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 038622 441 QAYNPVIQALFRRKRTTEAMRLFREMMEKADPPD---------------ALTYKHVFRGLCNGGGPIGEAVDFVIEMLER 505 (587)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 505 (587)
..+..++..+...|++++|+..|+++++.. +.+ ...+..++.++...|+ +++|+..++++++.
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~-~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLRE-YTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHhc
Confidence 445556666666666666666666666542 222 3556666667777777 77777777777763
Q ss_pred CCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHHHHHHHHH
Q 038622 506 GFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFLKIRKFQDALA 565 (587)
Q Consensus 506 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~ 565 (587)
.| +..++..++.+|...|++++|+..|+++++.+|.+ ..+..+..++...|++.+|.+
T Consensus 347 --~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 347 --DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp --STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34 56677777777777777777777777777777765 345666666667776666653
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.78 E-value=2.9e-08 Score=77.97 Aligned_cols=102 Identities=15% Similarity=0.084 Sum_probs=92.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-Cchhh
Q 038622 472 PPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETS 549 (587)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~ 549 (587)
+.+...+..++..+...|+ +++|+..++++++. .| ++.++..++.++...|++++|+..++++++..|.. ..+..
T Consensus 6 ~~~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRK-YPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCc-HHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 5567888899999999999 99999999999985 45 78999999999999999999999999999999986 45889
Q ss_pred hhhhHHHHHHHHHHHHhcchhhhccCc
Q 038622 550 MVRGFLKIRKFQDALATFGDILDSRMP 576 (587)
Q Consensus 550 ~~~~~~~~~~~~~A~~~~~~~~~~~~~ 576 (587)
++.++...|++++|+..|+++++..+.
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 999999999999999999999987755
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.78 E-value=7.4e-08 Score=89.57 Aligned_cols=121 Identities=15% Similarity=0.161 Sum_probs=96.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh----------------cCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 038622 442 AYNPVIQALFRRKRTTEAMRLFREMME----------------KADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLER 505 (587)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 505 (587)
.+..++..+...|++++|+..|+++++ .. +.+...+..++.++...|+ +++|+..++++++
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~-~~~~~~~~nla~~~~~~g~-~~~A~~~~~~al~- 301 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ-PVALSCVLNIGACKLKMSD-WQGAVDSCLEALE- 301 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH-HHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH-HHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHH-
Confidence 455666677777777777777777765 21 3345678888888999999 9999999999998
Q ss_pred CCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC-chhhhhhhHHHHHHHHHHHHh
Q 038622 506 GFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD-RETSMVRGFLKIRKFQDALAT 566 (587)
Q Consensus 506 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~A~~~ 566 (587)
+.| +..++..++.+|...|++++|+..++++++..|.+. .+..+..++...++..++.+.
T Consensus 302 -~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 302 -IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp -TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456 788999999999999999999999999999999764 467777788888888887654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.7e-07 Score=74.61 Aligned_cols=102 Identities=11% Similarity=0.078 Sum_probs=81.5
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHH
Q 038622 439 TPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPD----ALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSS 513 (587)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~ 513 (587)
+...+..++..+...|++++|+..|+++++. .|+ ...+..++..+...|+ +++|+..++++++. .| +..+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~--~~~~~~~ 101 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLED-YDKAETEASKAIEK--DGGDVKA 101 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--TSCCHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHcc-HHHHHHHHHHHHhh--CccCHHH
Confidence 4567778888888888888888888888875 344 5667777778888888 88888888888874 45 6788
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 514 FYMLAEGLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 514 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
+..++.++...|++++|+..++++++..|...
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 133 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNK 133 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 88888888888888888888888888888753
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.8e-08 Score=76.47 Aligned_cols=108 Identities=18% Similarity=0.203 Sum_probs=80.0
Q ss_pred hcCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHh
Q 038622 452 RRKRTTEAMRLFREMMEKA--DPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEE 528 (587)
Q Consensus 452 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 528 (587)
..|++++|+..|+++++.+ .|.+...+..++.++...|+ +++|+..++++++. .| ++.++..++.++...|+++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~ 78 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGE-YRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYE 78 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHH
Confidence 3578889999999998853 13445677788888889998 99999999999984 45 6888899999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchhhhhhhHHHHHHHHHHHHhcchhhh
Q 038622 529 TLVELIDMVMDKAKFSDRETSMVRGFLKIRKFQDALATFGDILD 572 (587)
Q Consensus 529 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 572 (587)
+|+..++++++..|.++. ...+..|+..+.+.++
T Consensus 79 ~A~~~~~~al~~~p~~~~----------~~~~~~ai~~~~~~l~ 112 (117)
T 3k9i_A 79 QGVELLLKIIAETSDDET----------IQSYKQAILFYADKLD 112 (117)
T ss_dssp HHHHHHHHHHHHHCCCHH----------HHHTHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHhCCCcHH----------HHHHHHHHHHHHHHHH
Confidence 999999999998887632 1335556666555443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.2e-07 Score=77.19 Aligned_cols=99 Identities=8% Similarity=-0.047 Sum_probs=64.6
Q ss_pred CHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038622 19 DVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVH 98 (587)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 98 (587)
+...|..+...+.+.|++++|+..|+++++.. +.++..|..++.++...|++++|+..++++++.+ +.+...+..++.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44556666666666677777776666666654 4566666666666666666666666666666664 445566666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 038622 99 GFCKEGRIEDALSFIQEMVSE 119 (587)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~ 119 (587)
++...|++++|+..|+++++.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 666666666666666666654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.73 E-value=1.8e-08 Score=78.71 Aligned_cols=99 Identities=14% Similarity=0.015 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC-------------HHHHHHHHHHHHccCCHhHHHHHHHHHHhc--
Q 038622 476 LTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPE-------------FSSFYMLAEGLVSLGKEETLVELIDMVMDK-- 540 (587)
Q Consensus 476 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 540 (587)
..+...+..+...|+ +++|+..|+++++. .|+ ..+|..++.++.+.|++++|+..++++++.
T Consensus 12 ~~~~~~G~~l~~~g~-~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 12 YLALSDAQRQLVAGE-YDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHTC-HHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC-HHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 345667778889999 99999999999984 454 238999999999999999999999999999
Q ss_pred -----CCCC-Cch----hhhhhhHHHHHHHHHHHHhcchhhhccCch
Q 038622 541 -----AKFS-DRE----TSMVRGFLKIRKFQDALATFGDILDSRMPR 577 (587)
Q Consensus 541 -----~~~~-~~~----~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 577 (587)
+|+. ..| +..+.++...|++++|+..|+++++..|..
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 9876 457 899999999999999999999999887544
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.72 E-value=1.1e-07 Score=73.90 Aligned_cols=113 Identities=12% Similarity=0.045 Sum_probs=74.9
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCC----HHHHH
Q 038622 406 VTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKAD--PPD----ALTYK 479 (587)
Q Consensus 406 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~ 479 (587)
..+..++..+...|++++|...++++....+. +...+..++.++...|++++|...++++++... +++ ...+.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 34566667777777777777777777665322 456677777777777777777777777776421 112 55666
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038622 480 HVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLV 522 (587)
Q Consensus 480 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 522 (587)
.++..+...|+ +++|.+.++++++. .|++.....+..+..
T Consensus 84 ~la~~~~~~~~-~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 123 (131)
T 1elr_A 84 RIGNSYFKEEK-YKDAIHFYNKSLAE--HRTPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc-HHHHHHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence 67777777777 78888888777773 456666666655544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.71 E-value=3.7e-08 Score=90.64 Aligned_cols=98 Identities=9% Similarity=0.014 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC-chhhhhhh-
Q 038622 477 TYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD-RETSMVRG- 553 (587)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~- 553 (587)
.+..++.++...|+ +++|+..++++++. .| +..++..++.+|...|++++|+..++++++..|.+. .+..+..+
T Consensus 232 ~~~nla~~~~~~g~-~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~ 308 (338)
T 2if4_A 232 CHLNIAACLIKLKR-YDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALA 308 (338)
T ss_dssp HHHHHHHHHHTTTC-CHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 56778888888888 99999999999884 45 788889999999999999999999999998888764 35555554
Q ss_pred HHHHHHHHHHHHhcchhhhccCch
Q 038622 554 FLKIRKFQDALATFGDILDSRMPR 577 (587)
Q Consensus 554 ~~~~~~~~~A~~~~~~~~~~~~~~ 577 (587)
....+....+...|+++....+..
T Consensus 309 ~~~~~~~~~a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 309 EQEKALYQKQKEMYKGIFKGKDEG 332 (338)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCC
Confidence 345667788888888888766543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.71 E-value=4.9e-07 Score=71.88 Aligned_cols=112 Identities=13% Similarity=-0.074 Sum_probs=75.7
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 038622 405 IVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLT----PQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKH 480 (587)
Q Consensus 405 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 480 (587)
...+..++..+...|++++|...|+++.+. .|+ ...+..++.++...|++++|+..++++++.. +.+...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 445566666777777777777777777664 333 4566777777777777777777777777753 455666667
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 038622 481 VFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLV 522 (587)
Q Consensus 481 l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 522 (587)
++.++...|+ +++|...++++++. .| +..++..+..+..
T Consensus 105 ~a~~~~~~~~-~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 105 RSQALEKLGR-LDQAVLDLQRCVSL--EPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHTC-HHHHHHHHHHHHHH--CSSCHHHHHHHHHHHC
T ss_pred HHHHHHHcCC-HHHHHHHHHHHHHc--CCCcHHHHHHHHHHHh
Confidence 7777777777 77777777777763 35 5555555555543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.69 E-value=4.4e-08 Score=76.27 Aligned_cols=91 Identities=14% Similarity=0.059 Sum_probs=69.8
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 038622 452 RRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGG---------PIGEAVDFVIEMLERGFLP-EFSSFYMLAEGL 521 (587)
Q Consensus 452 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 521 (587)
+.+.+++|++.++++++.. |.+...|..++.++...++ .+++|+..|+++++ +.| ...+++.++.+|
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHHHH
Confidence 3455677777777777664 5566666666666666554 04599999999998 567 688999999999
Q ss_pred HccC-----------CHhHHHHHHHHHHhcCCCCC
Q 038622 522 VSLG-----------KEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 522 ~~~g-----------~~~~A~~~~~~~~~~~~~~~ 545 (587)
...| ++++|++.|+++++.+|.+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 8875 89999999999999999873
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.68 E-value=9.9e-09 Score=99.20 Aligned_cols=132 Identities=14% Similarity=-0.033 Sum_probs=104.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 038622 408 YGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCN 487 (587)
Q Consensus 408 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (587)
+..++..+...|++++|.+.++++.+..+. +...+..++.++...|++++|+..++++++.. |.+...+..++.++..
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 334455667889999999999999886443 57889999999999999999999999999975 6678888899999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHH--HHccCCHhHHHHHHH-----------HHHhcCCCC
Q 038622 488 GGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEG--LVSLGKEETLVELID-----------MVMDKAKFS 544 (587)
Q Consensus 488 ~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~--~~~~g~~~~A~~~~~-----------~~~~~~~~~ 544 (587)
.|+ +++|++.++++++. .| +..++..++.+ +.+.|++++|++.++ ++++..|..
T Consensus 87 ~g~-~~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 87 LGK-FRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HTC-HHHHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred cCC-HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 999 99999999999984 45 56677777777 888999999999999 666666553
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.6e-07 Score=69.30 Aligned_cols=98 Identities=10% Similarity=0.033 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--ChhhHHHHH
Q 038622 55 ERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNP--DQFTYNTLV 132 (587)
Q Consensus 55 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 132 (587)
...+..++..+...|++++|...++++.+.. +.+...+..++.++...|++++|+..++++++.. +. +...+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 3344444555555555555555555554443 3334444455555555555555555555555442 22 344445555
Q ss_pred HHHHhc-CChHHHHHHHHHHHhC
Q 038622 133 NGLCKV-GHVKQALEVMDMMLQE 154 (587)
Q Consensus 133 ~~~~~~-~~~~~a~~~~~~~~~~ 154 (587)
.++... |++++|.+.++.+...
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 555555 5555555555555443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=7e-07 Score=87.84 Aligned_cols=156 Identities=9% Similarity=0.001 Sum_probs=135.3
Q ss_pred CChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhC
Q 038622 419 GRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKR----------TTEAMRLFREMMEKADPPDALTYKHVFRGLCNG 488 (587)
Q Consensus 419 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (587)
...++|++.++++...++. +..+|+.-..++...|+ ++++++.++++++.+ |.+...|..-.+++...
T Consensus 43 ~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 3457889999999997655 66889888888888887 999999999999985 88899999999999999
Q ss_pred C--CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccC-CHhHHHHHHHHHHhcCCCCC-chhhhhhhHHHH------
Q 038622 489 G--GPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLG-KEETLVELIDMVMDKAKFSD-RETSMVRGFLKI------ 557 (587)
Q Consensus 489 ~--~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~------ 557 (587)
+ + +++++++++++++. .| +..+|...+.++.+.| .++++++.++++++.+|.+. +|+..+.++...
T Consensus 121 ~~~~-~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 121 PEPN-WARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp SSCC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred cccc-HHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 9 5 79999999999995 56 8999999999999999 99999999999999999884 577777777664
Q ss_pred --------HHHHHHHHhcchhhhccCchhh
Q 038622 558 --------RKFQDALATFGDILDSRMPRKT 579 (587)
Q Consensus 558 --------~~~~~A~~~~~~~~~~~~~~~~ 579 (587)
+.+++|++.+.+++...|....
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~s 227 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQS 227 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCSH
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCcc
Confidence 8899999999999988766543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.67 E-value=4.6e-08 Score=90.02 Aligned_cols=153 Identities=9% Similarity=-0.023 Sum_probs=82.7
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 038622 370 KFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQA 449 (587)
Q Consensus 370 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 449 (587)
...+..++..+...|++++|...|++++.. .|+... +...++.+++...+ ....|..++.+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHH
Confidence 344566667777777888888888777763 222211 12223333333222 12378889999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHH-HHccCCH
Q 038622 450 LFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEG-LVSLGKE 527 (587)
Q Consensus 450 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~~ 527 (587)
+...|++++|+..++++++.+ +.+...+..++.++...|+ +++|+..|+++++ +.| +..++..++.+ ....+..
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~-~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQ-MDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC-HHHHHHHHHHTTC-------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999975 6678888999999999999 9999999999987 456 67777777777 4456778
Q ss_pred hHHHHHHHHHHhcCCCCC
Q 038622 528 ETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 528 ~~A~~~~~~~~~~~~~~~ 545 (587)
+++...+++++...|.+.
T Consensus 316 ~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 316 QKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp ------------------
T ss_pred HHHHHHHHHhhCCCCCCC
Confidence 899999999998888754
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.2e-06 Score=67.76 Aligned_cols=95 Identities=16% Similarity=0.055 Sum_probs=63.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh---HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---HHHHHHH
Q 038622 408 YGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTP---QAYNPVIQALFRRKRTTEAMRLFREMMEKADPPD---ALTYKHV 481 (587)
Q Consensus 408 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l 481 (587)
+..++..+...|++++|...++++.+..+. +. ..+..++.++...|++++|+..|+++++.. |.+ ...+..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHH
Confidence 445566667777777777777777665332 22 466677777777777777777777777653 333 4556666
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHc
Q 038622 482 FRGLCNGGGPIGEAVDFVIEMLER 505 (587)
Q Consensus 482 ~~~~~~~~~~~~~A~~~~~~~~~~ 505 (587)
+.++...|+ +++|+..++++++.
T Consensus 83 a~~~~~~g~-~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 83 GLSQYGEGK-NTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCC-HHHHHHHHHHHHHH
Confidence 667777777 77777777777763
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.64 E-value=3e-07 Score=88.48 Aligned_cols=95 Identities=7% Similarity=-0.024 Sum_probs=76.0
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 038622 440 PQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLA 518 (587)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 518 (587)
...|..++.++...|++++|+..++++++.. +.+...+..++.++...|+ +++|+..|+++++ +.| +..++..++
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~-~~~A~~~~~~al~--l~P~~~~a~~~l~ 392 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNE-FESAKGDFEKVLE--VNPQNKAARLQIS 392 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHT--TC----CHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccC-HHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 4678888999999999999999999999875 6678888888889999998 9999999999998 456 677888899
Q ss_pred HHHHccCCHhHHHH-HHHHHH
Q 038622 519 EGLVSLGKEETLVE-LIDMVM 538 (587)
Q Consensus 519 ~~~~~~g~~~~A~~-~~~~~~ 538 (587)
.++...|++++|.+ .++++.
T Consensus 393 ~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 393 MCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 99998888887764 344443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.7e-08 Score=76.63 Aligned_cols=93 Identities=10% Similarity=0.108 Sum_probs=78.1
Q ss_pred CCCCHHHHHHHHHHHHHcCC-CC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHHHHHHHH
Q 038622 488 GGGPIGEAVDFVIEMLERGF-LP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFLKIRKFQDAL 564 (587)
Q Consensus 488 ~~~~~~~A~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~ 564 (587)
.|+ +++|+..++++++.+. .| +..++..++.+|...|++++|+..++++++..|.+ +.+..++.++...|++++|+
T Consensus 3 ~g~-~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGL-EAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCc-HHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 566 9999999999998421 25 57888999999999999999999999999999987 45888999999999999999
Q ss_pred HhcchhhhccCchhhhh
Q 038622 565 ATFGDILDSRMPRKTFR 581 (587)
Q Consensus 565 ~~~~~~~~~~~~~~~~~ 581 (587)
..|+++++..+....+.
T Consensus 82 ~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHhCCCcHHHH
Confidence 99999999887665543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.9e-07 Score=74.56 Aligned_cols=134 Identities=13% Similarity=0.076 Sum_probs=82.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCC----HH
Q 038622 407 TYGTLIGGLCKAGRVEVASKLLRSIQMKGIV-LT----PQAYNPVIQALFRRKRTTEAMRLFREMMEKAD-PPD----AL 476 (587)
Q Consensus 407 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~ 476 (587)
++..++..+...|++++|...++++.+.... ++ ...+..++..+...|++++|...++++++... .++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555666666666666666666665543111 01 13566677777777777777777777665310 111 33
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcC
Q 038622 477 TYKHVFRGLCNGGGPIGEAVDFVIEMLER----GFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKA 541 (587)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 541 (587)
.+..++..+...|+ +++|...++++++. +..+ ...++..++.++...|++++|.+.++++++..
T Consensus 91 ~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQD-YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 45566666777777 77887777777642 1011 24456677778888888888888887776643
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.5e-06 Score=82.03 Aligned_cols=198 Identities=7% Similarity=-0.081 Sum_probs=107.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC
Q 038622 306 LIDGFCKLKRIEEAEEIFDEMEIQGISRNS----------------VTYNTLIDGLCKSRRVEDAAQLMDQMIMEG-LKP 368 (587)
Q Consensus 306 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 368 (587)
-+..+.+.|++++|++.|..+.+....... ..+..++..|...|++++|.+.+.++.... ..+
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 345566778888888888777765422110 135566677777777777777776665421 111
Q ss_pred CHh----hHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHc--CCC
Q 038622 369 DKF----TYNSLLTYYCRAGDIKRAADIVQNMTSN----GCEP-DIVTYGTLIGGLCKAGRVEVASKLLRSIQMK--GIV 437 (587)
Q Consensus 369 ~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~ 437 (587)
+.. +.+.+...+...|+++.|..+++..... +..+ ...++..++..+...|++++|..+++++... +..
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 111 2222333344556677777766665432 1111 1334556666666777777777776666543 111
Q ss_pred CC---hHhHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCC----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 038622 438 LT---PQAYNPVIQALFRRKRTTEAMRLFREMMEK--ADPPD----ALTYKHVFRGLCNGGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 438 ~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 504 (587)
.. ...+..++..|...|++++|..++++++.. .++.+ ...+..++..+...++ +++|...+.++.+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKD-YKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSC-HHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHH
Confidence 11 245566666666777777777776666542 11111 1223334444445555 6677666666664
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.62 E-value=2.6e-07 Score=74.90 Aligned_cols=78 Identities=12% Similarity=-0.000 Sum_probs=61.0
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CH-HHHHHH
Q 038622 440 PQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EF-SSFYML 517 (587)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~-~~~~~l 517 (587)
...|..++.++...|++++|+..++++++.+ |.+...+..++.++...|+ +++|+..++++++ +.| +. .+...+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~-~~~A~~~~~~al~--l~p~~~~~~~~~l 138 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWK-LDEAEEDLKLLLR--NHPAAASVVAREM 138 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHH--HCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhc-HHHHHHHHHHHHh--cCCCCHHHHHHHH
Confidence 3578888889999999999999999998875 6678888888888999998 9999999999988 456 44 334444
Q ss_pred HHHH
Q 038622 518 AEGL 521 (587)
Q Consensus 518 ~~~~ 521 (587)
..+.
T Consensus 139 ~~~~ 142 (162)
T 3rkv_A 139 KIVT 142 (162)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.61 E-value=6.7e-08 Score=78.46 Aligned_cols=135 Identities=13% Similarity=0.071 Sum_probs=106.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--C-CC--C
Q 038622 441 QAYNPVIQALFRRKRTTEAMRLFREMMEKAD-PPD----ALTYKHVFRGLCNGGGPIGEAVDFVIEMLERG--F-LP--E 510 (587)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~--~-~p--~ 510 (587)
.++..++..+...|++++|+..++++++... .++ ...+..++..+...|+ +++|...++++++.. . .+ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGE-FETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhCCcHHH
Confidence 5678899999999999999999999987411 112 1366778888999999 999999999988531 1 11 1
Q ss_pred HHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-------CchhhhhhhHHHHHHHHHHHHhcchhhhccCc
Q 038622 511 FSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-------DRETSMVRGFLKIRKFQDALATFGDILDSRMP 576 (587)
Q Consensus 511 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 576 (587)
..++..++.++...|++++|...++++++..+.. .....++.++...|++++|+..++++++....
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 5577889999999999999999999998764322 13577888899999999999999998876543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.60 E-value=3.6e-07 Score=84.94 Aligned_cols=91 Identities=10% Similarity=-0.022 Sum_probs=78.0
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 038622 439 TPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYML 517 (587)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l 517 (587)
+...|..++.++...|++++|+..++++++.. +.+...+..++.++...|+ +++|+..++++++. .| +..++..+
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~-~~eA~~~l~~Al~l--~P~~~~~~~~l 347 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKE-YDQALADLKKAQEI--APEDKAIQAEL 347 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccC-HHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 34678899999999999999999999999874 6678888889999999999 99999999999984 56 78888889
Q ss_pred HHHHHccCCHhHHHHH
Q 038622 518 AEGLVSLGKEETLVEL 533 (587)
Q Consensus 518 ~~~~~~~g~~~~A~~~ 533 (587)
+.++...++.+++.+.
T Consensus 348 ~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 348 LKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999888888777643
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.57 E-value=3.5e-06 Score=80.99 Aligned_cols=201 Identities=10% Similarity=-0.031 Sum_probs=148.4
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 038622 269 NMLIDSLCSRGMLEEALKLLKEMESSGCARNV----------------VTYNTLIDGFCKLKRIEEAEEIFDEMEIQGIS 332 (587)
Q Consensus 269 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 332 (587)
..-++.+...|++++|++.|..+.+....... .++..++..|...|++++|.+.+..+......
T Consensus 8 l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~ 87 (434)
T 4b4t_Q 8 LEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQ 87 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 34466778899999999999999887522211 24678999999999999999999987653211
Q ss_pred -CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--C
Q 038622 333 -RNS----VTYNTLIDGLCKSRRVEDAAQLMDQMIME----GLKPD-KFTYNSLLTYYCRAGDIKRAADIVQNMTSN--G 400 (587)
Q Consensus 333 -~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~ 400 (587)
++. .+...+...+...|+++.|..++++.... +..+. ..++..++..+...|++++|..+++.+... +
T Consensus 88 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 167 (434)
T 4b4t_Q 88 FAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKK 167 (434)
T ss_dssp SCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHh
Confidence 111 12333444555678999999999988752 22222 456788899999999999999999988753 2
Q ss_pred CCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHc--CC-CCC---hHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038622 401 CEP---DIVTYGTLIGGLCKAGRVEVASKLLRSIQMK--GI-VLT---PQAYNPVIQALFRRKRTTEAMRLFREMMEK 469 (587)
Q Consensus 401 ~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~-~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (587)
... ....+..+++.|...|++++|..+++++... .. .|. ...+..++..+...|++++|...|.++.+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 168 LDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp SSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 211 1457888899999999999999999988764 11 111 245667778888999999999999999874
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.54 E-value=1e-06 Score=65.86 Aligned_cols=96 Identities=14% Similarity=0.078 Sum_probs=68.1
Q ss_pred CHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCchhhhhh
Q 038622 474 DALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDRETSMVR 552 (587)
Q Consensus 474 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 552 (587)
+...+..++..+...|+ +++|+..++++++. .| ++.++..++.++...|++++|+..++++++..|..........
T Consensus 3 ~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGL-YREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 34556677777888888 88888888888874 45 6888888888888888888888888888888887633333444
Q ss_pred hHHHHHHHHHHHHhcchhhh
Q 038622 553 GFLKIRKFQDALATFGDILD 572 (587)
Q Consensus 553 ~~~~~~~~~~A~~~~~~~~~ 572 (587)
++...|....++..+...++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHHHhHhhhHh
Confidence 45555555555554444443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.1e-07 Score=71.25 Aligned_cols=95 Identities=16% Similarity=0.213 Sum_probs=78.3
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-C------H
Q 038622 439 TPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-E------F 511 (587)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~------~ 511 (587)
+...+..++..+...|++++|+..|+++++.. |.+...+..++.++...|+ +++|+..++++++ +.| + .
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~--~~p~~~~~~~~~ 78 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGE-YTQAIQMCQQGLR--YTSTAEHVAIRS 78 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHT--SCSSTTSHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcC-HHHHHHHHHHHHH--hCCCccHHHHHH
Confidence 45678888999999999999999999999874 6678888888989999999 9999999999997 456 4 6
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHH
Q 038622 512 SSFYMLAEGLVSLGKEETLVELIDMV 537 (587)
Q Consensus 512 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 537 (587)
.++..++.++...|++++|+..++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 67788888888888887777665543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=2.4e-07 Score=72.13 Aligned_cols=90 Identities=8% Similarity=0.025 Sum_probs=78.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCH----------hHHHHHHHHHHhcCCCC-CchhhhhhhHH
Q 038622 488 GGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKE----------ETLVELIDMVMDKAKFS-DRETSMVRGFL 555 (587)
Q Consensus 488 ~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~-~~~~~~~~~~~ 555 (587)
.+. +++|++.++++++. .| ++..+..++.++...|++ ++|+..|+++++.+|+. +.++.++.+|.
T Consensus 15 ~~~-feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 15 ILL-FEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHH-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HhH-HHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 344 89999999999984 56 899999999999998875 59999999999999987 56899999999
Q ss_pred HHH-----------HHHHHHHhcchhhhccCchhhh
Q 038622 556 KIR-----------KFQDALATFGDILDSRMPRKTF 580 (587)
Q Consensus 556 ~~~-----------~~~~A~~~~~~~~~~~~~~~~~ 580 (587)
..| ++++|++.|+++++.+|.....
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 885 8999999999999998765443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.3e-06 Score=65.78 Aligned_cols=84 Identities=11% Similarity=0.070 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHH
Q 038622 457 TEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELID 535 (587)
Q Consensus 457 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 535 (587)
++|+..|+++++.. |.+...+..++..+...|+ +++|+..++++++. .| +..++..++.+|...|++++|+..++
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQ-FDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccC-HHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35778888888864 6677888888888888898 99999999999884 45 68888899999999999999999999
Q ss_pred HHHhcCCCC
Q 038622 536 MVMDKAKFS 544 (587)
Q Consensus 536 ~~~~~~~~~ 544 (587)
++++..|..
T Consensus 78 ~al~~~~~~ 86 (115)
T 2kat_A 78 SGLAAAQSR 86 (115)
T ss_dssp HHHHHHHHH
T ss_pred HHHHhcccc
Confidence 998877653
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=9.9e-06 Score=63.07 Aligned_cols=111 Identities=6% Similarity=-0.030 Sum_probs=69.6
Q ss_pred CChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----CCCCHHH
Q 038622 419 GRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCN----GGGPIGE 494 (587)
Q Consensus 419 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~ 494 (587)
+++++|.++|++..+.+ ++... ++..|...+..++|++.|+++.+.| +......++..+.. .++ +++
T Consensus 9 ~d~~~A~~~~~~aa~~g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d-~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN---EMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKD-LRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT---CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCC-HHH
T ss_pred cCHHHHHHHHHHHHcCC---CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCcc-HHH
Confidence 35666666666666654 22222 6666666666666777777776643 44555556655555 445 777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHhHHHHHHHHHHhcC
Q 038622 495 AVDFVIEMLERGFLPEFSSFYMLAEGLVS----LGKEETLVELIDMVMDKA 541 (587)
Q Consensus 495 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 541 (587)
|+.+++++.+. .++.+...|+.+|.. .+++++|..+++++.+.+
T Consensus 80 A~~~~~~Aa~~---g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGL---NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 77777777763 356666777777776 677777777777776654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.34 E-value=6e-07 Score=67.74 Aligned_cols=84 Identities=8% Similarity=-0.019 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHHHHHHHHHhcchh
Q 038622 493 GEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFLKIRKFQDALATFGDI 570 (587)
Q Consensus 493 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~ 570 (587)
++|+..++++++. .| ++..+..++.+|...|++++|+..++++++.+|.. ..+..++.+|...|++++|+..|+++
T Consensus 2 ~~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3578899999984 46 78999999999999999999999999999999976 45889999999999999999999999
Q ss_pred hhccCchh
Q 038622 571 LDSRMPRK 578 (587)
Q Consensus 571 ~~~~~~~~ 578 (587)
++..+...
T Consensus 80 l~~~~~~~ 87 (115)
T 2kat_A 80 LAAAQSRG 87 (115)
T ss_dssp HHHHHHHT
T ss_pred HHhccccc
Confidence 98765443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.29 E-value=6.7e-06 Score=58.63 Aligned_cols=63 Identities=16% Similarity=0.280 Sum_probs=29.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCC
Q 038622 478 YKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKF 543 (587)
Q Consensus 478 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 543 (587)
+..++..+...|+ +++|+..++++++. .| +..++..++.++...|++++|+..++++++..|.
T Consensus 12 ~~~la~~~~~~~~-~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 75 (91)
T 1na3_A 12 WYNLGNAYYKQGD-YDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75 (91)
T ss_dssp HHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHccC-HHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 3344444444444 55555555554442 22 3444444555555555555555555555544443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=2.9e-05 Score=60.39 Aligned_cols=110 Identities=10% Similarity=-0.084 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh----cCCHHHHH
Q 038622 385 DIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFR----RKRTTEAM 460 (587)
Q Consensus 385 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 460 (587)
++++|...|++..+.|. .... ++..|...+.+++|.++|++..+.+ ++..+..++..|.. .+++++|+
T Consensus 10 d~~~A~~~~~~aa~~g~---~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE---MFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTC---TTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCC---Hhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 45666666666666542 1222 5555655566666666666666642 55566666666666 56677777
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcC
Q 038622 461 RLFREMMEKADPPDALTYKHVFRGLCN----GGGPIGEAVDFVIEMLERG 506 (587)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~~~~~~ 506 (587)
++|+++.+.| +......+...+.. .++ +++|..+++++.+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d-~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKN-EKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcC-HHHHHHHHHHHHHCC
Confidence 7777776643 44455556655555 455 777777777776644
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.25 E-value=4.6e-06 Score=59.50 Aligned_cols=83 Identities=18% Similarity=0.294 Sum_probs=72.3
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 038622 439 TPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYML 517 (587)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l 517 (587)
+...+..++..+...|++++|+..++++++.. +.+...+..++..+...|+ +++|+..++++++. .| +..++..+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~--~p~~~~~~~~l 83 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGD-YDEAIEYYQKALEL--DPNNAEAKQNL 83 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhc--CCCCHHHHHHH
Confidence 35678889999999999999999999999975 6678888899999999999 99999999999984 46 78888899
Q ss_pred HHHHHccC
Q 038622 518 AEGLVSLG 525 (587)
Q Consensus 518 ~~~~~~~g 525 (587)
+.++...|
T Consensus 84 ~~~~~~~g 91 (91)
T 1na3_A 84 GNAKQKQG 91 (91)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 98887654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.25 E-value=4e-06 Score=61.04 Aligned_cols=88 Identities=16% Similarity=0.251 Sum_probs=71.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHH-HHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCchhhhhhhHHHH
Q 038622 480 HVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFS-SFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDRETSMVRGFLKI 557 (587)
Q Consensus 480 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (587)
..+..+...|+ +++|+..++++++. .| +.. ++..++.+|...|++++|+..++++++.+|...... ..
T Consensus 5 ~~a~~~~~~~~-~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-------~~ 74 (99)
T 2kc7_A 5 KTIKELINQGD-IENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ-------AR 74 (99)
T ss_dssp HHHHHHHHHTC-HHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH-------HH
T ss_pred HHHHHHHHcCC-HHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH-------HH
Confidence 34556778888 99999999999984 46 677 899999999999999999999999999999864322 12
Q ss_pred HHHHHHHHhcchhhhccCch
Q 038622 558 RKFQDALATFGDILDSRMPR 577 (587)
Q Consensus 558 ~~~~~A~~~~~~~~~~~~~~ 577 (587)
+.+.+|+..|+++....+..
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHHHhccCccc
Confidence 78999999999988766543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.5e-05 Score=76.42 Aligned_cols=59 Identities=10% Similarity=0.023 Sum_probs=25.9
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHh-----cCCCCCc----hhhhhhhHHHHHHHHHHHHhcchhhh
Q 038622 514 FYMLAEGLVSLGKEETLVELIDMVMD-----KAKFSDR----ETSMVRGFLKIRKFQDALATFGDILD 572 (587)
Q Consensus 514 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~----~~~~~~~~~~~~~~~~A~~~~~~~~~ 572 (587)
+..|+.+|..+|++++|+.+++++++ .+|+.+. ...+..++...+.+.+|...|.++.+
T Consensus 396 l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 396 VMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555544442 2233211 22333444444555555555544444
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.14 E-value=1.8e-06 Score=63.04 Aligned_cols=70 Identities=16% Similarity=0.237 Sum_probs=61.1
Q ss_pred CCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 472 PPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
|.+...+..++..+...|+ +++|+..++++++. .| ++.++..++.+|...|++++|+..++++++..+..
T Consensus 4 p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDN-ASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 5677888889999999999 99999999999984 46 68899999999999999999999999999876643
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.13 E-value=1.1e-05 Score=58.74 Aligned_cols=83 Identities=18% Similarity=0.195 Sum_probs=61.1
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-CCCHHHHHHH
Q 038622 439 TPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGF-LPEFSSFYML 517 (587)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~-~p~~~~~~~l 517 (587)
+...+..++.++...|++++|+..|+++++.+ |.+...+..++.++...|+ +++|++.++++++..- .++......+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~~~~~~~~~~~~l 83 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDR-TDDAIDTYAQGIEVAREEGTQKDLSEL 83 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhhhcCCchhHHHHH
Confidence 56778888889999999999999999998875 5667778888888888888 9999999988886310 1244444444
Q ss_pred HHHHHc
Q 038622 518 AEGLVS 523 (587)
Q Consensus 518 ~~~~~~ 523 (587)
...+.+
T Consensus 84 ~~~l~~ 89 (100)
T 3ma5_A 84 QDAKLK 89 (100)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.11 E-value=2.1e-05 Score=75.34 Aligned_cols=127 Identities=13% Similarity=-0.010 Sum_probs=92.4
Q ss_pred HHHhcCChHHHHHHHHHHHHc---CCCCC----hHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CC-CCC-HHHHH
Q 038622 414 GLCKAGRVEVASKLLRSIQMK---GIVLT----PQAYNPVIQALFRRKRTTEAMRLFREMMEK-----AD-PPD-ALTYK 479 (587)
Q Consensus 414 ~~~~~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~-~~~~~ 479 (587)
.+..+|++++|..++++.++. -+.++ ..+++.++.+|..+|++++|..+++++++. |. .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345678888888888877654 11122 256788899999999999999999888762 21 222 34577
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHccCCHhHHHHHHHHHHhcC
Q 038622 480 HVFRGLCNGGGPIGEAVDFVIEMLER---GFLPE----FSSFYMLAEGLVSLGKEETLVELIDMVMDKA 541 (587)
Q Consensus 480 ~l~~~~~~~~~~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 541 (587)
.++..|..+|+ +++|+.+++++++. -+.|+ ......+..++..+|++++|..+|.++.+..
T Consensus 398 nLa~~~~~~G~-~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGH-IEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCC-HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999 99999999998731 12242 3444678888889999999999999887644
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.09 E-value=5.9e-05 Score=53.43 Aligned_cols=77 Identities=9% Similarity=0.036 Sum_probs=63.1
Q ss_pred CCCHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCchh
Q 038622 472 PPDALTYKHVFRGLCNGGG--PIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDRET 548 (587)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~--~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 548 (587)
++++..+..++.++...++ ..++|..+++++++ +.| ++.+...++..+++.|++++|+..++++++.+|. +.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~ 79 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDR 79 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccH
Confidence 6677788888887765444 26899999999998 457 7999999999999999999999999999999998 6554
Q ss_pred hhh
Q 038622 549 SMV 551 (587)
Q Consensus 549 ~~~ 551 (587)
..+
T Consensus 80 ~~i 82 (93)
T 3bee_A 80 VTI 82 (93)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00011 Score=56.55 Aligned_cols=88 Identities=14% Similarity=0.139 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHhHH
Q 038622 456 TTEAMRLFREMMEKADPPDALTYKHVFRGLCNGG---GPIGEAVDFVIEMLERGFLP--EFSSFYMLAEGLVSLGKEETL 530 (587)
Q Consensus 456 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A 530 (587)
...+.+.|.+..+.+ +++..+...+++++.+.. + .++++.+++..++.+ .| ..+.++.|+-.+++.|++++|
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~-~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDD-IRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHH-HHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 456677777777766 678888888888988877 4 669999999999854 35 478889999999999999999
Q ss_pred HHHHHHHHhcCCCCCc
Q 038622 531 VELIDMVMDKAKFSDR 546 (587)
Q Consensus 531 ~~~~~~~~~~~~~~~~ 546 (587)
+++++++++.+|.+..
T Consensus 91 ~~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQ 106 (152)
T ss_dssp HHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHhcCCCCHH
Confidence 9999999999998743
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00027 Score=63.62 Aligned_cols=72 Identities=7% Similarity=0.009 Sum_probs=59.0
Q ss_pred CCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc
Q 038622 472 PPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
+.++..+..+...+...|+ +++|+..++++++. .|+...+..++.++.-.|++++|.+.+++++..+|..++
T Consensus 274 ~~~a~~~~alal~~l~~gd-~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGK-TDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred CcCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 6677777777666666788 99999999999985 478777788899999999999999999999999887654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.87 E-value=2.2e-05 Score=57.00 Aligned_cols=87 Identities=13% Similarity=0.090 Sum_probs=50.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHc
Q 038622 446 VIQALFRRKRTTEAMRLFREMMEKADPPDAL-TYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVS 523 (587)
Q Consensus 446 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 523 (587)
.+..+...|++++|+..|+++++.. |.+.. .+..++.++...|+ +++|++.++++++. .| +..++..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~--~p~~~~~~~~------- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGD-WQKALNNYQSAIEL--NPDSPALQAR------- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH--CTTSTHHHHH-------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc--CCCcHHHHHH-------
Confidence 4555666666677777766666653 44555 56666666666666 67777777776663 34 3333311
Q ss_pred cCCHhHHHHHHHHHHhcCCCC
Q 038622 524 LGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 524 ~g~~~~A~~~~~~~~~~~~~~ 544 (587)
+.+.++...++++...+|.+
T Consensus 75 -~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 75 -KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp -HHHHHHHHHHCCTTHHHHCC
T ss_pred -HHHHHHHHHHHHHhccCccc
Confidence 34555566665555555443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00012 Score=65.81 Aligned_cols=72 Identities=11% Similarity=-0.005 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCchhhhhhhHHHHHHHHHHHHhcchhhhccCchhhh
Q 038622 509 PEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDRETSMVRGFLKIRKFQDALATFGDILDSRMPRKTF 580 (587)
Q Consensus 509 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 580 (587)
.++.++..++..+...|++++|+..+++++..+|....+..++.++...|+.++|++.|.++...+|.+..+
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~ 346 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTL 346 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChH
Confidence 378888889888888899999999999999999654345677888999999999999999999999877644
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.68 E-value=5.8e-05 Score=58.04 Aligned_cols=88 Identities=15% Similarity=0.103 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC---CHhHHHHHHHHHHhcC-CC--CCchhhhhhhHHHHHHHHHHHH
Q 038622 492 IGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLG---KEETLVELIDMVMDKA-KF--SDRETSMVRGFLKIRKFQDALA 565 (587)
Q Consensus 492 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~A~~ 565 (587)
...+.+.|.+..+.+ +++..+...+++++.+.+ +.++++.+++.+++.+ |. .+.++.++.+|++.|++++|.+
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 556777788877765 479999999999999998 6679999999999988 62 3668999999999999999999
Q ss_pred hcchhhhccCchhhh
Q 038622 566 TFGDILDSRMPRKTF 580 (587)
Q Consensus 566 ~~~~~~~~~~~~~~~ 580 (587)
+++++++..|...+-
T Consensus 93 y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHCTTCHHH
T ss_pred HHHHHHhcCCCCHHH
Confidence 999999998765443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.58 E-value=1.3e-07 Score=86.11 Aligned_cols=223 Identities=15% Similarity=0.175 Sum_probs=124.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 038622 54 DERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVN 133 (587)
Q Consensus 54 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 133 (587)
.+.+|..++.+..+.|...+|+..|-++ .++..|..++.+..+.|.+++-..++..+.+. ..++..=+.|+.
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 4567888888888888888877654322 24455667778888888888888887766554 334455567788
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHH
Q 038622 134 GLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEE 213 (587)
Q Consensus 134 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 213 (587)
+|++.++..+..+.+ ..|+..-...+++-|...|.++.|.-+|..+.. |..|+.++...|++..
T Consensus 125 ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQA 188 (624)
T ss_dssp HHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGS
T ss_pred HHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHH
Confidence 888888766544432 135666667777777788877777766654322 2234444555555555
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 038622 214 ATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMES 293 (587)
Q Consensus 214 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 293 (587)
|.+.-++ -.++.+|..+-.+|...+++.-|.-.--.++-. ++ -...++..|-..|-+++-+.+++..+.
T Consensus 189 AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglg 257 (624)
T 3lvg_A 189 AVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALG 257 (624)
T ss_dssp STTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTT
T ss_pred HHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhC
Confidence 5543221 114455555555555555555444333222211 00 111233334445555555555555443
Q ss_pred CCCCCCHHHHHHHHHHHHc
Q 038622 294 SGCARNVVTYNTLIDGFCK 312 (587)
Q Consensus 294 ~~~~~~~~~~~~l~~~~~~ 312 (587)
.. ......++.|+-.|++
T Consensus 258 lE-rAHmGmFTELaILYsK 275 (624)
T 3lvg_A 258 LE-RAHMGMFTELAILYSK 275 (624)
T ss_dssp ST-TCCHHHHHHHHHHHHS
T ss_pred CC-chhHHHHHHHHHHHHh
Confidence 22 2233444444444443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00064 Score=58.42 Aligned_cols=90 Identities=12% Similarity=0.166 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHc-c
Q 038622 456 TTEAMRLFREMMEKADPPD---ALTYKHVFRGLCNG-----GGPIGEAVDFVIEMLERGFLP--EFSSFYMLAEGLVS-L 524 (587)
Q Consensus 456 ~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----~~~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~-~ 524 (587)
...|...++++++.+ |+ ...+..++..|... |+ .++|.++|+++++ +.| +...+...++.+.. .
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd-~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGG-MEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCC-HHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCC-HHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhc
Confidence 567888888888863 44 56777788777774 66 9999999999998 456 37888889998877 4
Q ss_pred CCHhHHHHHHHHHHhcCCCCCchhhh
Q 038622 525 GKEETLVELIDMVMDKAKFSDRETSM 550 (587)
Q Consensus 525 g~~~~A~~~~~~~~~~~~~~~~~~~~ 550 (587)
|++++|.+.+++++..+|..+....+
T Consensus 254 gd~~~a~~~L~kAL~a~p~~~P~~~l 279 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDPESVPHNKL 279 (301)
T ss_dssp TCHHHHHHHHHHHHHCCGGGCSSCHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCChhH
Confidence 99999999999999988885333333
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0011 Score=48.21 Aligned_cols=71 Identities=8% Similarity=-0.008 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----C-CCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 474 DALTYKHVFRGLCNGGGPIGEAVDFVIEMLERG-----F-LPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 474 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~-----~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
+......++..+...++ ++.|+..++++++.. . .+...++..|+.++.+.|++++|+..++++++..|.+.
T Consensus 4 sa~dc~~lG~~~~~~~~-y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~ 80 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEAD-YYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ 80 (104)
T ss_dssp CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CHHHHHHHHHHHHHccc-hHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence 33444566666777777 777777777776431 0 12466777888888888888888888888888888763
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.51 E-value=1.8e-07 Score=85.17 Aligned_cols=233 Identities=13% Similarity=0.139 Sum_probs=144.0
Q ss_pred CHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038622 19 DVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVH 98 (587)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 98 (587)
.+.+|..|.++.++.+...+|+..|=++ .|+..|..++.+..+.|.+++-++.+.-+.+. ..++.+=+.|+.
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 3458999999999999999998765332 36667889999999999999999998887765 345566678999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHH
Q 038622 99 GFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEE 178 (587)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 178 (587)
+|++.++..+-.++ +. .|+..-...++.-|...|.++.|.-+|..+.. |..+..++...|++..
T Consensus 125 ayAk~~rL~elEef----l~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 125 ALAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQA 188 (624)
T ss_dssp HHHTSCSSSTTTST----TS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGS
T ss_pred HHHhhCcHHHHHHH----Hc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHH
Confidence 99999987664433 22 45666677888888888888888777654432 2334445555666665
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038622 179 AVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKT 258 (587)
Q Consensus 179 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 258 (587)
|.+.-++ ..++.+|..+..+|...+.+.-|.-.--.+.-. +.....++..|-..|-+++-+.+++....
T Consensus 189 AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglg 257 (624)
T 3lvg_A 189 AVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALG 257 (624)
T ss_dssp STTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTT
T ss_pred HHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhC
Confidence 5543322 225556666666666666555554332222211 11122334445555666666666665553
Q ss_pred cCCCCCHHhHHHHHHHHHccCChHHHHHHH
Q 038622 259 KGCQPDEFTYNMLIDSLCSRGMLEEALKLL 288 (587)
Q Consensus 259 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 288 (587)
.. +.....++.|+-.|.+- ++++..+.+
T Consensus 258 lE-rAHmGmFTELaILYsKY-~PeKlmEHl 285 (624)
T 3lvg_A 258 LE-RAHMGMFTELAILYSKF-KPQKMREHL 285 (624)
T ss_dssp ST-TCCHHHHHHHHHHHHSS-CTTHHHHHH
T ss_pred CC-chhHHHHHHHHHHHHhc-CHHHHHHHH
Confidence 32 33445555555555443 333333333
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.001 Score=46.96 Aligned_cols=67 Identities=10% Similarity=0.074 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038622 52 APDERTFTTLMQGLIEEGN---LDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSE 119 (587)
Q Consensus 52 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 119 (587)
+.|+..+..++.++...++ .++|...++++++.+ |.+......++..+...|++++|+..|+++++.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3445555555555443322 455555555555554 444555555555555555555555555555554
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00037 Score=65.59 Aligned_cols=88 Identities=9% Similarity=0.021 Sum_probs=66.2
Q ss_pred hcCCHHHHHHHHHHHHhc---CCCCC----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCCC---C-HHHHHHH
Q 038622 452 RRKRTTEAMRLFREMMEK---ADPPD----ALTYKHVFRGLCNGGGPIGEAVDFVIEMLER---GFLP---E-FSSFYML 517 (587)
Q Consensus 452 ~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~---~~~p---~-~~~~~~l 517 (587)
..|++++|+.+++++++. -+.|+ ..+++.++.+|..+|+ +++|+.+++++++. -+.| + ...+..|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~-~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQD-WEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 457889999999888763 11222 3457788888899998 99999999998731 1223 2 4466789
Q ss_pred HHHHHccCCHhHHHHHHHHHHhc
Q 038622 518 AEGLVSLGKEETLVELIDMVMDK 540 (587)
Q Consensus 518 ~~~~~~~g~~~~A~~~~~~~~~~ 540 (587)
+.+|..+|++++|+.+++++++.
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHH
Confidence 99999999999999999998763
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0012 Score=48.63 Aligned_cols=91 Identities=12% Similarity=0.095 Sum_probs=69.6
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCH
Q 038622 453 RKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGE---AVDFVIEMLERGFLP--EFSSFYMLAEGLVSLGKE 527 (587)
Q Consensus 453 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~ 527 (587)
......+.+.|.+....| +++..+-..+++++.+... ... ++.+++...+.+ .| ..+.++.|+-.+++.|+|
T Consensus 14 ~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~-~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRY-NDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSS-HHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhH
Confidence 344556666777776665 5777777788888888776 554 888888887743 34 466778899999999999
Q ss_pred hHHHHHHHHHHhcCCCCCc
Q 038622 528 ETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 528 ~~A~~~~~~~~~~~~~~~~ 546 (587)
++|++.++.+++..|.+..
T Consensus 91 ~~A~~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 91 EKALKYVRGLLQTEPQNNQ 109 (126)
T ss_dssp HHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHhCCCCHH
Confidence 9999999999999998743
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0012 Score=62.19 Aligned_cols=93 Identities=12% Similarity=0.071 Sum_probs=71.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc---CCCCC----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCCC-C---HH
Q 038622 447 IQALFRRKRTTEAMRLFREMMEK---ADPPD----ALTYKHVFRGLCNGGGPIGEAVDFVIEMLER---GFLP-E---FS 512 (587)
Q Consensus 447 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~---~~~p-~---~~ 512 (587)
+..+...|++++|+..++++++. -+.|+ ..+++.++.+|...|+ +++|+.+++++++. -+.| . ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~-~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGL-LEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 44566788999999999999874 12232 3457778888999999 99999999998831 1223 2 44
Q ss_pred HHHHHHHHHHccCCHhHHHHHHHHHHhc
Q 038622 513 SFYMLAEGLVSLGKEETLVELIDMVMDK 540 (587)
Q Consensus 513 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 540 (587)
.+..|+.+|..+|++++|+.+++++++.
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 6688999999999999999999998853
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0027 Score=54.62 Aligned_cols=110 Identities=12% Similarity=-0.062 Sum_probs=78.4
Q ss_pred ChHHHHHHHHHHHHcCCCCC---hHhHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhC-CC
Q 038622 420 RVEVASKLLRSIQMKGIVLT---PQAYNPVIQALFRR-----KRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNG-GG 490 (587)
Q Consensus 420 ~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~ 490 (587)
....|...++++.+. .|+ ...|..++..|... |+.++|.++|+++++.+..-+......++..++.. |+
T Consensus 178 ~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 178 TVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred hHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 367888889999984 455 46888999999884 99999999999999964112366677788888775 76
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 038622 491 PIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVM 538 (587)
Q Consensus 491 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 538 (587)
.++|.+.+++++......++. ..+.+. +.-.+|..+++++-
T Consensus 256 -~~~a~~~L~kAL~a~p~~~P~--~~lan~----~~q~eA~~LL~~~~ 296 (301)
T 3u64_A 256 -RAGFDEALDRALAIDPESVPH--NKLLVI----LSQKRARWLKAHVQ 296 (301)
T ss_dssp -HHHHHHHHHHHHHCCGGGCSS--CHHHHH----HHHHHHHHHHHTHH
T ss_pred -HHHHHHHHHHHHcCCCCCCCC--hhHHHH----HHHHHHHHHHHHhH
Confidence 999999999999844330132 123333 33466777666543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0036 Score=45.43 Aligned_cols=65 Identities=8% Similarity=0.084 Sum_probs=37.5
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 038622 439 TPQAYNPVIQALFRRKRTTEAMRLFREMMEKA------DPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 504 (587)
+......++..+...|++..|...|+.+++.. ..+....+..++.++.+.|+ +++|+.+++++++
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~-~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGD-LDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccC-HHHHHHHHHHHHh
Confidence 34445556666666666666666666665531 02234455566666666666 6666666666665
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0015 Score=61.57 Aligned_cols=86 Identities=6% Similarity=-0.080 Sum_probs=54.1
Q ss_pred cCChHHHHHHHHHHHHc---CCCCC----hHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C-CCCC-HHHHHHHHH
Q 038622 418 AGRVEVASKLLRSIQMK---GIVLT----PQAYNPVIQALFRRKRTTEAMRLFREMMEK-----A-DPPD-ALTYKHVFR 483 (587)
Q Consensus 418 ~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~-~~~~~~l~~ 483 (587)
.|++++|..++++.++. -+.|+ ..+++.++.+|..+|++++|+.+++++++. | ..|+ ...++.++.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45677777777666543 11122 145677777777777777777777777652 2 1222 334667777
Q ss_pred HHHhCCCCHHHHHHHHHHHHH
Q 038622 484 GLCNGGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 484 ~~~~~~~~~~~A~~~~~~~~~ 504 (587)
.|..+|+ +++|+.+++++++
T Consensus 391 ~~~~qg~-~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLEN-KAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTC-HHHHHHHHHHHHH
T ss_pred HHHhccC-HHHHHHHHHHHHH
Confidence 7777777 7777777777763
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=97.21 E-value=0.25 Score=50.61 Aligned_cols=277 Identities=10% Similarity=-0.011 Sum_probs=144.8
Q ss_pred HHhcCChHHHHHHHHHHHHcC--CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCC-------CCCHH--HHHHHHH
Q 038622 240 LCLTSNFDVAMELFQEMKTKG--CQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGC-------ARNVV--TYNTLID 308 (587)
Q Consensus 240 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~--~~~~l~~ 308 (587)
....|+.++++.++......+ -.+....-..++-.....|..+++..++...+.... .+... +...++.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 456678888877777655421 011222223333444555555677777777665321 01111 1223333
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCH
Q 038622 309 GFCKLKRIEEAEEIFDEMEIQGISRNS--VTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDI 386 (587)
Q Consensus 309 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 386 (587)
++...++ +++.+.+..+.... .... ..-..++..+.-.|+.+....++..+... ...+..-...+.-++...|+.
T Consensus 464 a~~GS~~-eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~-~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 464 AAMGSAN-IEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET-QHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HSTTCCC-HHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCG
T ss_pred HhcCCCC-HHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc-CcHHHHHHHHHHHHhhhCCCh
Confidence 4444444 45555565555432 1111 12223344456677777777777766653 111222223334445577888
Q ss_pred HHHHHHHHHHHHCCCCCCcc--hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHH
Q 038622 387 KRAADIVQNMTSNGCEPDIV--TYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFR 464 (587)
Q Consensus 387 ~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 464 (587)
+.+..+++.+... ..|... ....++-+|+..|+.....++++.+.... ..+..-...++-++...|+.+.+.++++
T Consensus 541 e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 541 ELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 8888888887763 222222 12334556778888887777888887641 1122222333444455677777777776
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHccC
Q 038622 465 EMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFS----SFYMLAEGLVSLG 525 (587)
Q Consensus 465 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g 525 (587)
.+.+.+ .|....-..+.-.....|....+++..+.++.. +++.. +...|+.+.....
T Consensus 619 ~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtn 679 (963)
T 4ady_A 619 LLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMILIQQT 679 (963)
T ss_dssp TGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHSTTCC
T ss_pred HHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHhcCCc
Confidence 666543 333333223333344455545788898888874 45443 3344555554443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0044 Score=46.79 Aligned_cols=105 Identities=12% Similarity=0.058 Sum_probs=65.8
Q ss_pred CCCHHHHHHHHHHHHhcCCh------hHHHHHHHHHHHcCCCCChhhHHHHHHH------HHhcCCHHHHHHHHHHHHHC
Q 038622 52 APDERTFTTLMQGLIEEGNL------DGALRIREQMVEHGCLVTNVTVNVLVHG------FCKEGRIEDALSFIQEMVSE 119 (587)
Q Consensus 52 ~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~a~~~~~~~~~~ 119 (587)
+.|+.+|-..+...-+.|+. ++.+++|+++...-+|.....|...+.. +...+++++|.++|+.+++.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 56777777777777777777 7777888877775322222222222221 12336777777777777664
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 038622 120 GFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFD 157 (587)
Q Consensus 120 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 157 (587)
.+.-...|...+..-.++|+...|.+++...+..+..
T Consensus 90 -hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 90 -CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp -CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred -hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 2333666777777777777777777777777775443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=97.15 E-value=0.29 Score=50.21 Aligned_cols=260 Identities=10% Similarity=0.038 Sum_probs=138.9
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC--C-----CCHHHHH--HHHH
Q 038622 275 LCSRGMLEEALKLLKEMESSGCARN--VVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGI--S-----RNSVTYN--TLID 343 (587)
Q Consensus 275 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-----~~~~~~~--~l~~ 343 (587)
....|+.++++..+...+..+...+ ...-..++-+....|...++...+.......- . +....-. .++.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4566777888777776654210122 22223334444555555567777776654321 0 1111112 2223
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHh--hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCh
Q 038622 344 GLCKSRRVEDAAQLMDQMIMEGLKPDKF--TYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRV 421 (587)
Q Consensus 344 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 421 (587)
++.-.++ +++...+..++... .+... .-..++..+...|+.+....++..+.+.. ..+..-...++-++...|+.
T Consensus 464 a~~GS~~-eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 464 AAMGSAN-IEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HSTTCCC-HHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCG
T ss_pred HhcCCCC-HHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCCh
Confidence 3333444 45666666666532 11111 22234445667788877777877776531 11122223344445578899
Q ss_pred HHHHHHHHHHHHcCCCCChH----hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHH
Q 038622 422 EVASKLLRSIQMKGIVLTPQ----AYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVD 497 (587)
Q Consensus 422 ~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~ 497 (587)
+.+..+++.+... .++. ....++.+|+..|+.....+++..+.... ..+......+.-.+...|+ .+.+.+
T Consensus 541 e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~-~e~v~r 615 (963)
T 4ady_A 541 ELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRD-YTTVPR 615 (963)
T ss_dssp GGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSS-CSSHHH
T ss_pred HHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCC-HHHHHH
Confidence 9999898888763 2332 23456677888999888777998888742 2222222222223344566 555666
Q ss_pred HHHHHHHcCCCCC--HHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 498 FVIEMLERGFLPE--FSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 498 ~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
+++.+.+.+ .|. ..+-..||.++...|+ .+|+..+..+.. +++..
T Consensus 616 lv~~L~~~~-d~~VR~gAalALGli~aGn~~-~~aid~L~~L~~-D~d~~ 662 (963)
T 4ady_A 616 IVQLLSKSH-NAHVRCGTAFALGIACAGKGL-QSAIDVLDPLTK-DPVDF 662 (963)
T ss_dssp HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCC-HHHHHHHHHHHT-CSSHH
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhccCCCc-HHHHHHHHHHcc-CCCHH
Confidence 666555532 342 2233445555555554 678888888754 44433
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0047 Score=58.24 Aligned_cols=89 Identities=13% Similarity=0.021 Sum_probs=59.7
Q ss_pred HHhcCChHHHHHHHHHHHHc---CCCCC----hHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C-CCCC-HHHHHH
Q 038622 415 LCKAGRVEVASKLLRSIQMK---GIVLT----PQAYNPVIQALFRRKRTTEAMRLFREMMEK-----A-DPPD-ALTYKH 480 (587)
Q Consensus 415 ~~~~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~-~~~~~~ 480 (587)
+...|++++|...++++++. -+.|+ ..+++.++.+|...|++++|+.+++++++. | ..|+ ...++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 44567777777777777654 11222 246677788888888888888888877752 2 1122 345667
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHH
Q 038622 481 VFRGLCNGGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 481 l~~~~~~~~~~~~~A~~~~~~~~~ 504 (587)
++..+..+|+ +++|+.+++++++
T Consensus 377 La~~~~~~g~-~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 377 VGKLQLHQGM-FPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHhcCC-HHHHHHHHHHHHH
Confidence 7777888888 8888888888773
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0017 Score=47.91 Aligned_cols=88 Identities=15% Similarity=0.120 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhH---HHHHHHHHHhcC-CCC--CchhhhhhhHHHHHHHHHHHH
Q 038622 492 IGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEET---LVELIDMVMDKA-KFS--DRETSMVRGFLKIRKFQDALA 565 (587)
Q Consensus 492 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~A~~ 565 (587)
...+.+.|.+....| .|+..+...+++++.+..+..+ ++.+++.+.+.+ |.. +-.+.++.++++.|+|..|..
T Consensus 17 l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 566777777777655 5899999999999999998877 999999998876 422 457889999999999999999
Q ss_pred hcchhhhccCchhhh
Q 038622 566 TFGDILDSRMPRKTF 580 (587)
Q Consensus 566 ~~~~~~~~~~~~~~~ 580 (587)
+++.+++..|...+.
T Consensus 96 ~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 96 YVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHHHCTTCHHH
T ss_pred HHHHHHHhCCCCHHH
Confidence 999999998765544
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0099 Score=44.92 Aligned_cols=103 Identities=14% Similarity=0.144 Sum_probs=54.2
Q ss_pred ChHhHHHHHHHHHhcCCH------HHHHHHHHHHHhcCCCCCHH-HHHHHHH------HHHhCCCCHHHHHHHHHHHHHc
Q 038622 439 TPQAYNPVIQALFRRKRT------TEAMRLFREMMEKADPPDAL-TYKHVFR------GLCNGGGPIGEAVDFVIEMLER 505 (587)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~~~~~~~A~~~~~~~~~~ 505 (587)
|.++|..++......|++ +..+++|+++... +||+.. .|...+. .+...++ .++|.++|+.+++.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D-~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQE-PDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHC-GGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHH
Confidence 445555555555555555 5555666666554 344311 1111100 1122244 66677777776653
Q ss_pred CCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 506 GFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 506 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
+ ..=..+|...+..-.++|+...|++++.+++...|.+
T Consensus 90 h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 90 C-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp C-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred h-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 2 1124555555566666777777777777777766655
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.14 Score=40.47 Aligned_cols=102 Identities=12% Similarity=0.125 Sum_probs=51.4
Q ss_pred HHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 038622 28 KALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIE 107 (587)
Q Consensus 28 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 107 (587)
...++.|+++.|.++.+.+ .+...|..++......|+++-|.++|.++.. +..+.-.|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3445556666666555544 1445566666666666666666666555432 223444445555555
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 038622 108 DALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDM 150 (587)
Q Consensus 108 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 150 (587)
....+-+.....| -++.....+.-.|+++++.++|.+
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5444444433332 123333444455566665555543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.46 E-value=0.071 Score=40.06 Aligned_cols=75 Identities=12% Similarity=0.161 Sum_probs=55.9
Q ss_pred CCCHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc
Q 038622 472 PPDALTYKHVFRGLCNGGG--PIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
.|+..+-..+++++.+... +..+++.+++...+.+..-..+.++.|+-.+++.|+|++|+++.+.+++..|.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 5677777777777777665 14467888888887431124667788888999999999999999999999998743
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=96.37 E-value=0.033 Score=41.23 Aligned_cols=73 Identities=12% Similarity=0.190 Sum_probs=59.2
Q ss_pred CCCHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc
Q 038622 472 PPDALTYKHVFRGLCNGGGP--IGEAVDFVIEMLERGFLP--EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~~--~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
.|+..+-..+++++.+..+. ..+++.+++...+.+ | ..+.++.|+-.+++.|+|++|+++.+.+++..|.+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 67777777888888777651 447888999888754 5 4778888999999999999999999999999998743
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.72 Score=43.63 Aligned_cols=169 Identities=17% Similarity=0.143 Sum_probs=97.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCh----H
Q 038622 373 YNSLLTYYCRAGDIKRAADIVQNMTSN--GCEPD---IVTYGTLIGGLCKAGRVEVASKLLRSIQMK--GIVLTP----Q 441 (587)
Q Consensus 373 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~----~ 441 (587)
...|...+...|++.+|..++..+... +..+. ...+...++.|...+++..|..+++++... ...+++ .
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 345677788888888888888877643 22211 335666677888888888888888887532 111122 3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCHHHH----HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038622 442 AYNPVIQALFRRKRTTEAMRLFREMMEK-ADPPDALTY----KHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYM 516 (587)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~----~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ 516 (587)
.+...+..+...++|.+|.+.|.++.+. ....+...+ ..++....-.+. .++--.++.+.......++...+..
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~-~~~~~~ll~~~~~~~~~~~l~~~~~ 298 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPY-GNLQNDLIHKIQNDNNLKKLESQES 298 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSC-SSTTHHHHHSHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHhhcccccccHHHHH
Confidence 4566777788888998888888887753 111222221 222222222222 2222333333332222245667777
Q ss_pred HHHHHHc--cCCHhHHHHHHHHHHhcCC
Q 038622 517 LAEGLVS--LGKEETLVELIDMVMDKAK 542 (587)
Q Consensus 517 l~~~~~~--~g~~~~A~~~~~~~~~~~~ 542 (587)
+..++.. ..+++.+.+.++..+...+
T Consensus 299 L~k~f~~~~L~~~~~~~~~~~~~L~~~~ 326 (445)
T 4b4t_P 299 LVKLFTTNELMRWPIVQKTYEPVLNEDD 326 (445)
T ss_dssp HHHHHHHCCSSSHHHHHHHTCSSTTTCC
T ss_pred HHHHHHhchHhhhHHHHHHHHHHhcccc
Confidence 8887764 3567777777766555443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.33 E-value=0.13 Score=53.62 Aligned_cols=45 Identities=16% Similarity=0.147 Sum_probs=22.8
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 038622 346 CKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNM 396 (587)
Q Consensus 346 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 396 (587)
...|+++.|.++.+. ..+...|..++..+.+.++++.|.+.|.++
T Consensus 663 l~~~~~~~A~~~~~~------~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTD------ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTT------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHh------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344555555554322 124445555555555555555555555543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.38 Score=38.04 Aligned_cols=100 Identities=20% Similarity=0.230 Sum_probs=52.2
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHH
Q 038622 345 LCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVA 424 (587)
Q Consensus 345 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 424 (587)
..+.|+++.|.++.+.+ .+...|..++......|+++-|...|.+... +..+.-.|...|+.+.-
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34556666666655543 2455566666666666666666666655321 33444445555665555
Q ss_pred HHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHH
Q 038622 425 SKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFRE 465 (587)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 465 (587)
.++-+.....| -++.....+...|++++++++|.+
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 54444443321 123334444555666666666544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.16 Score=52.99 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=24.5
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038622 416 CKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMM 467 (587)
Q Consensus 416 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 467 (587)
...|++++|.++.+.+ .+...|..++..+...|+++.|.++|.++.
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 3455555555553221 244555666666666666666666665543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.026 Score=43.76 Aligned_cols=131 Identities=15% Similarity=0.138 Sum_probs=74.3
Q ss_pred CCCCCc--chHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCC---h----HhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038622 400 GCEPDI--VTYGTLIGGLCKAGRVEVASKLLRSIQMKG-IVLT---P----QAYNPVIQALFRRKRTTEAMRLFREMMEK 469 (587)
Q Consensus 400 ~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~---~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (587)
|+.|.. ..+..-+..+...|.++.|+-+...+.... ..|+ + .++..++.+++..|++..|...|++++..
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 444433 344455666778888888888877765431 1122 1 35667788888888888888888888763
Q ss_pred --CCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 470 --ADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 470 --~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
.++........+. .... ... .....++.+..+.++.||.+.|++++|+..++.++.+...+
T Consensus 93 ~k~l~k~~s~~~~~~----~~ss-~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~ 155 (167)
T 3ffl_A 93 KKALSKTSKVRPSTG----NSAS-TPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTP 155 (167)
T ss_dssp HHCC----------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCH
T ss_pred HHHHhcCCCcccccc----ccCC-Ccc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCH
Confidence 1111111110010 0000 000 01123467788889999999999999999998876655443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.04 Score=55.23 Aligned_cols=55 Identities=22% Similarity=0.140 Sum_probs=48.1
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 038622 481 VFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVM 538 (587)
Q Consensus 481 l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 538 (587)
-...+...|+ ++-|+++.++++. +.| +..+|..|+.+|...|+++.|+-.++.++
T Consensus 343 Qa~FLl~K~~-~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 343 QTNFLLNRGD-YELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHTTC-HHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHhccCc-HHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3445667777 9999999999998 567 79999999999999999999999999886
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.047 Score=42.35 Aligned_cols=122 Identities=9% Similarity=0.029 Sum_probs=65.4
Q ss_pred CHhhHHHHHHHHHHcCChhhHHHHHHhhccCC-CCCC-------HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCC
Q 038622 19 DVSTFNILIKALCKAHQIRPAILMMEEMPGYG-LAPD-------ERTFTTLMQGLIEEGNLDGALRIREQMVEHG--CLV 88 (587)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~ 88 (587)
+..++..-++.+...|.++.|+-+...+.... ..++ ..++..++.++...|+|..|...|+++++.. ++.
T Consensus 19 ~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k 98 (167)
T 3ffl_A 19 SHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSK 98 (167)
T ss_dssp --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhc
Confidence 33455566788888888888888777765431 1222 1256677788888888888888888875431 111
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 038622 89 TNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQ 153 (587)
Q Consensus 89 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 153 (587)
+......+. ....... ......+...-..+..++.+.+++++|+.+++.+..
T Consensus 99 ~~s~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 99 TSKVRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp -------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred CCCcccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 111100000 0000000 001123444555577777777777777777766533
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.20 E-value=0.65 Score=34.42 Aligned_cols=140 Identities=15% Similarity=0.061 Sum_probs=85.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHH
Q 038622 381 CRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAM 460 (587)
Q Consensus 381 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 460 (587)
.-.|..++..++..+.... .+..-++.++--....-+-+-..++++.+-+. + |. ...|+.....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-F--Di----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-F--DL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-S--CG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh-c--Cc----------HhhhcHHHHH
Confidence 4456777777777766653 12333443333333444445555555544432 1 11 1345555555
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhc
Q 038622 461 RLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDK 540 (587)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 540 (587)
..+-.+ ..+.......+..+..+|+ -++-.+++...+.. -.|+++.+..++.+|.+.|+..+|.++++++.+.
T Consensus 82 ~C~~~~-----n~~se~vd~ALd~lv~~~K-kDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 82 ECGVIN-----NTLNEHVNKALDILVIQGK-RDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHT-----TCCCHHHHHHHHHHHHTTC-HHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhcc-HhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 555443 2334445556667777888 78877787776542 3678888888999999999999999999888887
Q ss_pred CCC
Q 038622 541 AKF 543 (587)
Q Consensus 541 ~~~ 543 (587)
+..
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 754
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.052 Score=54.41 Aligned_cols=58 Identities=16% Similarity=0.174 Sum_probs=50.8
Q ss_pred HHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHHHHHHHHHhcchh
Q 038622 513 SFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFLKIRKFQDALATFGDI 570 (587)
Q Consensus 513 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~ 570 (587)
.+..-++.+...|+++-|+.+.++++...|.. .+|..|+.+|...|+++.|+-.++..
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34445677888999999999999999999987 77999999999999999999887665
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=95.03 E-value=0.33 Score=35.97 Aligned_cols=67 Identities=15% Similarity=0.119 Sum_probs=31.8
Q ss_pred CCcchHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038622 403 PDIVTYGTLIGGLCKAGR---VEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEK 469 (587)
Q Consensus 403 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (587)
|+..+-..++.+++++.+ ..+++.+++.+.+.++.-..+.+..++-++.+.|++++|.++.+.+++.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 344444455555554442 2344555555544332112334445555555555555555555555553
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.97 E-value=0.79 Score=34.50 Aligned_cols=66 Identities=15% Similarity=0.118 Sum_probs=27.1
Q ss_pred CCcchHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038622 403 PDIVTYGTLIGGLCKAGR---VEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMME 468 (587)
Q Consensus 403 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (587)
|+..+-..++++++++.+ ..+++.+++.+...++.-..+-...++-++.+.|++++|.++.+.+++
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 334444444444444332 223444444444432221223333444444444444444444444444
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.19 E-value=1.2 Score=33.00 Aligned_cols=59 Identities=19% Similarity=0.144 Sum_probs=25.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 038622 236 LIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSG 295 (587)
Q Consensus 236 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 295 (587)
.+.....+|.-++-.+++..+... .+|++.....++.+|.+.|+..++.+++.++-+.|
T Consensus 97 ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 97 ALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 333344444444444444443221 13444444444444444444444444444444443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=93.69 E-value=3.5 Score=36.63 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=14.4
Q ss_pred hhhHHHHHHHHHHHHhcchhhh
Q 038622 551 VRGFLKIRKFQDALATFGDILD 572 (587)
Q Consensus 551 ~~~~~~~~~~~~A~~~~~~~~~ 572 (587)
+..|+-.++...|...+..+.+
T Consensus 194 VL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 194 VLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 3446677778888776665554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=93.28 E-value=1.7 Score=47.07 Aligned_cols=129 Identities=15% Similarity=0.166 Sum_probs=64.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 038622 128 YNTLVNGLCKVGHVKQALEVMDMMLQEGFDPD----VFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLIS 203 (587)
Q Consensus 128 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 203 (587)
|..++..+-+.+.++.+.+.-..+++...+.+ ...|..+...+...|++++|...+-.+.... .....+..|+.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~r~~cLr~LV~ 979 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--LKKSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--SCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--HHHHHHHHHHH
Confidence 45555566666666666666555554321111 1135555666666666666666665555432 22334444444
Q ss_pred HHhcc------------CCHHHHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 038622 204 TLCKE------------NQVEEATELARVLTSK--GILPDVCTFNSLIQGLCLTSNFDVA-MELFQEMKT 258 (587)
Q Consensus 204 ~~~~~------------~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 258 (587)
..+.. |..++..+++....+. .+...+.-|..|-.-+...|++..| .-+|+.+.+
T Consensus 980 ~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 980 QLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 33332 4455555555443221 1121233345455555667777654 445665554
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=93.27 E-value=7 Score=38.60 Aligned_cols=200 Identities=10% Similarity=0.033 Sum_probs=97.7
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038622 279 GMLEEALKLLKEMESSGCARNVVTY----NTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDA 354 (587)
Q Consensus 279 ~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 354 (587)
.+.+.|...+....+.. ..+.... ..++......+...++...+...... ..+.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHH
Confidence 36677777777765432 2222222 22222333344244555555554432 23333333334444566888888
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038622 355 AQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMK 434 (587)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 434 (587)
...|..+.... ........-++.++...|+.++|..+|+.+... . +|..++. ..+.|..-.. ...
T Consensus 305 ~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~--~fYg~lA-a~~Lg~~~~~-------~~~ 369 (618)
T 1qsa_A 305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R--GFYPMVA-AQRIGEEYEL-------KID 369 (618)
T ss_dssp HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C--SHHHHHH-HHHTTCCCCC-------CCC
T ss_pred HHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C--ChHHHHH-HHHcCCCCCC-------CCC
Confidence 88777765421 123344455666677778888888888777641 1 2322221 1222321000 000
Q ss_pred CCCCCh------HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 038622 435 GIVLTP------QAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVI 500 (587)
Q Consensus 435 ~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~ 500 (587)
.+.+.. ..-..-+..+...|....|...+..+... .+......+.......|. ++.++....
T Consensus 370 ~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~-~~~~v~~~~ 437 (618)
T 1qsa_A 370 KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQW-WDLSVQATI 437 (618)
T ss_dssp CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTC-HHHHHHHHH
T ss_pred CCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCC-hHHHHHHHH
Confidence 000000 01122344566778888888877777653 223333344444455666 666665443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=92.71 E-value=4.9 Score=35.41 Aligned_cols=147 Identities=11% Similarity=0.014 Sum_probs=72.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHH----HHHHHhcCCCCCHHHHHHHHHHHHh
Q 038622 412 IGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRL----FREMMEKADPPDALTYKHVFRGLCN 487 (587)
Q Consensus 412 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~----~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (587)
..-|.+++++++|++++..... .+.+.|+...|..+ ++...+.+.+++......++..+..
T Consensus 40 ~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 40 ANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 3335555666666665543322 23333444443333 2222233455555555555544433
Q ss_pred CCCCHHHHHHHHHHHH----HcCCC--CCHHHHHHHHHHHHccCCHhHHHHHHHHH---------------Hhc---CCC
Q 038622 488 GGGPIGEAVDFVIEML----ERGFL--PEFSSFYMLAEGLVSLGKEETLVELIDMV---------------MDK---AKF 543 (587)
Q Consensus 488 ~~~~~~~A~~~~~~~~----~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------------~~~---~~~ 543 (587)
....-..=.+++++++ +.|-. .++.....++..|++.|++.+|+..+=.. .+. +..
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCc
Confidence 2221112234444444 22211 26777777888888888888777755211 111 211
Q ss_pred CCc---hhhhhhhHHHHHHHHHHHHhcchhhhc
Q 038622 544 SDR---ETSMVRGFLKIRKFQDALATFGDILDS 573 (587)
Q Consensus 544 ~~~---~~~~~~~~~~~~~~~~A~~~~~~~~~~ 573 (587)
.+. ....+..|+-.|+...|...|......
T Consensus 185 ~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 185 STVAEFFSRLVFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 111 122233466778888888887776543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.30 E-value=7.6 Score=36.62 Aligned_cols=96 Identities=16% Similarity=0.191 Sum_probs=70.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC---hHhHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCH----H
Q 038622 408 YGTLIGGLCKAGRVEVASKLLRSIQMK--GIVLT---PQAYNPVIQALFRRKRTTEAMRLFREMMEK--ADPPDA----L 476 (587)
Q Consensus 408 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~----~ 476 (587)
...|+..+...|++.+|.+++..+... +.... .+.+...++.|...+++..|..++.++... ..++++ .
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 456888999999999999999998754 22211 245667788899999999999999987542 112222 2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 038622 477 TYKHVFRGLCNGGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 504 (587)
.+...+..+...++ |.+|-..|..+.+
T Consensus 220 ~~~~~~~~~~~e~~-y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 220 YYNLLVKISLHKRE-YLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHCC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh-HHHHHHHHHHHHh
Confidence 34556666677777 9999999988875
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=92.19 E-value=1.3 Score=41.04 Aligned_cols=78 Identities=9% Similarity=0.024 Sum_probs=51.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----HcCCCCCHHHHHHH
Q 038622 443 YNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEML-----ERGFLPEFSSFYML 517 (587)
Q Consensus 443 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~-----~~~~~p~~~~~~~l 517 (587)
...++..+...|++++|+..+..++... |-+...+..++.++...|+ ..+|.+.|+++. +.|+.|++.+-...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr-~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDR-QSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3445666667777777777777777654 5666677777777777777 777777777654 34777776655544
Q ss_pred HHHHH
Q 038622 518 AEGLV 522 (587)
Q Consensus 518 ~~~~~ 522 (587)
-.++.
T Consensus 252 ~~il~ 256 (388)
T 2ff4_A 252 ERILR 256 (388)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 44443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=92.18 E-value=1 Score=48.75 Aligned_cols=85 Identities=12% Similarity=0.035 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CH----HHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCchhhh
Q 038622 476 LTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EF----SSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDRETSM 550 (587)
Q Consensus 476 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 550 (587)
..|..++..+.+.+. ++.++++.+.+++.. .+ +. ..|..+...+...|+|++|...+-..+......+-...+
T Consensus 900 ~YY~hv~~LFe~~~~-~~~vi~fa~lAi~~~-~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESA-YIDALEFSLLADASK-ETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSC-CHHHHHHHHHHHHHC-CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHhc-cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 456677777777787 888888888888642 22 22 256677788888899999988888877766666666777
Q ss_pred hhhHHHHHHHHH
Q 038622 551 VRGFLKIRKFQD 562 (587)
Q Consensus 551 ~~~~~~~~~~~~ 562 (587)
+...+..|....
T Consensus 978 V~~lce~~~~~~ 989 (1139)
T 4fhn_B 978 VNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHCCHHH
T ss_pred HHHHHhCCChhh
Confidence 766666655444
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=92.17 E-value=7 Score=35.90 Aligned_cols=28 Identities=18% Similarity=0.030 Sum_probs=18.8
Q ss_pred HHhHHHHHHHHHccCChHHHHHHHHHHH
Q 038622 265 EFTYNMLIDSLCSRGMLEEALKLLKEME 292 (587)
Q Consensus 265 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 292 (587)
..+...++..|...|+.++..+++....
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~ 46 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTR 46 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3456667777777777777777666553
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.61 E-value=1.2 Score=41.22 Aligned_cols=72 Identities=13% Similarity=0.088 Sum_probs=49.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCcccHHH
Q 038622 93 VNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQ-----EGFDPDVFTYNS 165 (587)
Q Consensus 93 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 165 (587)
...++..+...|+++++...+..+.... |-+...|..++.++.+.|+..+|++.|+.+.+ .|+.|+..+-..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 3445666777777777777777776653 55666777777777888888888777777644 367776655443
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=89.19 E-value=0.67 Score=39.37 Aligned_cols=123 Identities=12% Similarity=0.000 Sum_probs=82.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCH
Q 038622 413 GGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPI 492 (587)
Q Consensus 413 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 492 (587)
....+.|+++++++.+..-++..+. |......++..++-.|+++.|.+-++.+.+. .|+......+... .
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~-------l 74 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRH-------L 74 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHH-------H
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHH-------H
Confidence 3456789999999998888887555 7778888999999999999999999988885 3443322211111 1
Q ss_pred HHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHH--ccCCHhHHHHHHHHHHhcCCCCC
Q 038622 493 GEAVDFVIEMLERGFLP-----EFSSFYMLAEGLV--SLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 493 ~~A~~~~~~~~~~~~~p-----~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
=.|...=.+....+-.| .......+..++. ..|+.++|..+-..+.+..|...
T Consensus 75 I~aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~ 134 (273)
T 1zbp_A 75 VKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 134 (273)
T ss_dssp HHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence 12223333333332233 2445555555554 56999999999999998888764
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=88.67 E-value=12 Score=32.96 Aligned_cols=82 Identities=13% Similarity=0.100 Sum_probs=48.3
Q ss_pred CChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCCCCHHHH
Q 038622 438 LTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNG---GGPIGEAVDFVIEMLERGFLPEFSSF 514 (587)
Q Consensus 438 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~A~~~~~~~~~~~~~p~~~~~ 514 (587)
-++.....++..|.+.|++.+|...|-. +-..+...+..++..+... |. ..++--++-++
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~~~~~~~-~~e~dlf~~Ra------------ 194 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLCQVDDIE-DSTVAEFFSRL------------ 194 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHTTCCC-HHHHHHHHHHH------------
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHHhcCCCC-cchHHHHHHHH------------
Confidence 3667888889999999999888887751 1111344454454444433 33 23322222222
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHh
Q 038622 515 YMLAEGLVSLGKEETLVELIDMVMD 539 (587)
Q Consensus 515 ~~l~~~~~~~g~~~~A~~~~~~~~~ 539 (587)
+--|.-.|+...|...++...+
T Consensus 195 ---VL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 195 ---VFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp ---HHHHHHTTBHHHHHHHHHHHHH
T ss_pred ---HHHHHHhcCHHHHHHHHHHHHH
Confidence 2235567888888888877653
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=87.91 E-value=4.2 Score=28.32 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038622 353 DAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTS 398 (587)
Q Consensus 353 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 398 (587)
+..+-++.+....+.|++......+.+|.+.+|+..|+++++-+..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4445555555555566666666666666666666666666665544
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=87.76 E-value=23 Score=35.02 Aligned_cols=396 Identities=9% Similarity=0.014 Sum_probs=204.3
Q ss_pred HHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 038622 30 LCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLI--EEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIE 107 (587)
Q Consensus 30 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 107 (587)
..+.|++..+..+...+... +.. .|...-..-. .....++....+++-.. .|.....-...+..+.+.+++.
T Consensus 16 a~~~~~~~~~~~l~~~l~~~--pL~--~yl~y~~l~~~l~~~~~~ev~~Fl~~~~~--~p~~~~Lr~~~l~~l~~~~~w~ 89 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMPGLKDY--PLY--PYLEYRQITDDLMNQPAVTVTNFVRANPT--LPPARTLQSRFVNELARREDWR 89 (618)
T ss_dssp HHHTTCHHHHHHHSGGGTTS--TTH--HHHHHHHHHHTGGGCCHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHCCCHHHHHHHHHhhcCC--CcH--HHHHHHHHHhCcccCCHHHHHHHHHHCCC--ChhHHHHHHHHHHHHHhCCCHH
Confidence 46678888887776665432 222 2222222222 22245544444443221 2333344455566777788887
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHH--HHHHHHH
Q 038622 108 DALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEE--AVEILNQ 185 (587)
Q Consensus 108 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--a~~~~~~ 185 (587)
..+.++.. .+.+...-.....+....|+..+|....+.+=..| ...+.....++..+.+.|.... ...-++.
T Consensus 90 ~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~ 163 (618)
T 1qsa_A 90 GLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYLERIRL 163 (618)
T ss_dssp HHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 77664432 14455555566777788898877877777765554 3345566677777776664432 2333333
Q ss_pred HHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCC---------CCCCHhh---HHHHHHHHHhcCChHHHHHHH
Q 038622 186 MILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKG---------ILPDVCT---FNSLIQGLCLTSNFDVAMELF 253 (587)
Q Consensus 186 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~~~~~---~~~l~~~~~~~~~~~~a~~~~ 253 (587)
+...+ +......++... . .+.......+..+.... ..++... +...+.- ....+.+.|...+
T Consensus 164 al~~~---~~~~a~~l~~~l-~-~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~r-lar~d~~~A~~~~ 237 (618)
T 1qsa_A 164 AMKAG---NTGLVTVLAGQM-P-ADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFAS-VARQDAENARLMI 237 (618)
T ss_dssp HHHTT---CHHHHHHHHHTC-C-GGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHH-HHHHCHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHhC-C-HHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHH-HHhcCHHHHHHHH
Confidence 33332 222222222111 0 01110011111111110 1112211 1111222 2334889999999
Q ss_pred HHHHHcCCCCCHHh----HHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 038622 254 QEMKTKGCQPDEFT----YNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQ 329 (587)
Q Consensus 254 ~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 329 (587)
....... ..+... ...++......+...++...+....... .+.......+....+.|+++.|...|..+...
T Consensus 238 ~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~ 314 (618)
T 1qsa_A 238 PSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPME 314 (618)
T ss_dssp HHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT
T ss_pred Hhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHcccc
Confidence 8886543 223322 2233333344453556677777765543 44444555555556779999999999887543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-cc--
Q 038622 330 GISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPD-IV-- 406 (587)
Q Consensus 330 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~-- 406 (587)
. ........-+..++...|+.++|..+|..+... . +|..++. ..+.|..... ....+.+. ..
T Consensus 315 ~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~--~fYg~lA-a~~Lg~~~~~-------~~~~~~~~~~~~~ 379 (618)
T 1qsa_A 315 A-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R--GFYPMVA-AQRIGEEYEL-------KIDKAPQNVDSAL 379 (618)
T ss_dssp G-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C--SHHHHHH-HHHTTCCCCC-------CCCCCCSCCCCHH
T ss_pred c-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C--ChHHHHH-HHHcCCCCCC-------CCCCCChhHHhhh
Confidence 2 123444455677888899999999999998752 1 2333321 2233321000 00001110 00
Q ss_pred ---hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHH
Q 038622 407 ---TYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFR 464 (587)
Q Consensus 407 ---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 464 (587)
.....+..+...|....|...+..+... .+......++......|.++.++....
T Consensus 380 ~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 380 TQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp HHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 1123345567788888888888877763 233333455555666777776665443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=87.74 E-value=5.4 Score=27.80 Aligned_cols=50 Identities=10% Similarity=0.102 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038622 385 DIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMK 434 (587)
Q Consensus 385 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 434 (587)
|.-+..+-++.+...++.|++.+....+++|.+.+++..|.++++-+..+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34455555666666666677777777777777777777777777766655
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.89 E-value=2.6 Score=39.60 Aligned_cols=97 Identities=13% Similarity=0.024 Sum_probs=46.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCChHhH----H
Q 038622 372 TYNSLLTYYCRAGDIKRAADIVQNMTSN--GCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMK-GIVLTPQAY----N 444 (587)
Q Consensus 372 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~----~ 444 (587)
+...++..|.+.|+++.|.+.+.++... +...-...+...++.+...+++..+...+.++... .-.+++... .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 3444555555555555555555555543 11112334455555555566666666666555432 011111111 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 038622 445 PVIQALFRRKRTTEAMRLFREMME 468 (587)
Q Consensus 445 ~l~~~~~~~g~~~~A~~~~~~~~~ 468 (587)
..+..+...+++.+|.+.|-++..
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 222333455666666666666554
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=86.20 E-value=18 Score=32.20 Aligned_cols=83 Identities=5% Similarity=-0.068 Sum_probs=49.6
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038622 437 VLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYM 516 (587)
Q Consensus 437 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ 516 (587)
.-++.....++..|.+.+++.+|...|- + |-.+....+..++..+...+. ..++--++-+
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~-~~e~dlfiaR--------------- 192 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDE-SHTAPLYCAR--------------- 192 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSC-GGGHHHHHHH---------------
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcC-CccHHHHHHH---------------
Confidence 3467778888999999999999888773 2 223333555555555544443 2222222222
Q ss_pred HHHHHHccCCHhHHHHHHHHHHh
Q 038622 517 LAEGLVSLGKEETLVELIDMVMD 539 (587)
Q Consensus 517 l~~~~~~~g~~~~A~~~~~~~~~ 539 (587)
.+--|.-.|+...|...++...+
T Consensus 193 aVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 193 AVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 22235667788888887666553
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=86.10 E-value=15 Score=31.30 Aligned_cols=53 Identities=19% Similarity=0.237 Sum_probs=29.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038622 380 YCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQM 433 (587)
Q Consensus 380 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 433 (587)
..+.|++++++.....-++..+. |...-..+...++-.|+++.|.+-++...+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34455666666666555554332 444455555566666666666666655555
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.36 E-value=7.6 Score=36.45 Aligned_cols=98 Identities=10% Similarity=-0.066 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCChhh--H
Q 038622 56 RTFTTLMQGLIEEGNLDGALRIREQMVEHGC--LVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSE---GFNPDQFT--Y 128 (587)
Q Consensus 56 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~--~ 128 (587)
.+...++..|.+.|+++.|.+.+.++..... ......+..+++.+...+++..+...+.++... +..|+... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3567778888888888888888888876432 223456677778888888888888888877542 21222211 1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 038622 129 NTLVNGLCKVGHVKQALEVMDMMLQ 153 (587)
Q Consensus 129 ~~l~~~~~~~~~~~~a~~~~~~~~~ 153 (587)
..-+..+...+++..|...|-++..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 1122334466888888888777654
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.43 E-value=10 Score=30.69 Aligned_cols=53 Identities=9% Similarity=-0.044 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 492 IGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 492 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
..++.++|.-+...|+.. -...|...+..+...|++.+|..+|+..++..-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 556777777777666555 35555666777777777777777777777665444
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=83.33 E-value=12 Score=27.79 Aligned_cols=41 Identities=7% Similarity=0.138 Sum_probs=18.0
Q ss_pred HHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038622 393 VQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQM 433 (587)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 433 (587)
++.+...++.|++.+....+++|.+.+|+..|..+|+-+..
T Consensus 76 lN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 76 MNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp HHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444444433
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=82.12 E-value=9.4 Score=28.32 Aligned_cols=59 Identities=19% Similarity=0.258 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHH
Q 038622 353 DAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLI 412 (587)
Q Consensus 353 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 412 (587)
+..+-++.+....+.|++......+.+|.+.+|+..|+++++-+... ..+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 45556666666677788888888888888888888888888877654 233344565544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 587 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 7e-09 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 4e-04 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.004 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.8 bits (133), Expect = 7e-09
Identities = 50/383 (13%), Positives = 118/383 (30%), Gaps = 23/383 (6%)
Query: 102 KEGRIEDALSFIQEMVSEGFNPDQF-TYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDV 160
+ G E A ++ + PD L + + + ++ + ++ +P
Sbjct: 11 QAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK--QNPL- 65
Query: 161 FTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARV 220
S L + + ++ + + I+ + +
Sbjct: 66 --LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA 123
Query: 221 LTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFT-YNMLIDSLCSRG 279
S G L + + +K QP+ ++ L ++G
Sbjct: 124 YVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 183
Query: 280 MLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYN 339
+ A+ ++ + + Y L + + + + A + ++V +
Sbjct: 184 EIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHG 241
Query: 340 TLIDGLCKSRRVEDAAQLMDQMIMEGLKPD-KFTYNSLLTYYCRAGDIKRAADIVQNMTS 398
L + ++ A + I L+P Y +L G + A D
Sbjct: 242 NLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTA-L 298
Query: 399 NGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQ---AYNPVIQALFRRKR 455
C + L + G +E A +L R K + + P+ A++ + L ++ +
Sbjct: 299 RLCPTHADSLNNLANIKREQGNIEEAVRLYR----KALEVFPEFAAAHSNLASVLQQQGK 354
Query: 456 TTEAMRLFREMMEKADPPDALTY 478
EA+ ++E + P A Y
Sbjct: 355 LQEALMHYKEAIRI-SPTFADAY 376
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.4 bits (93), Expect = 4e-04
Identities = 33/195 (16%), Positives = 74/195 (37%), Gaps = 10/195 (5%)
Query: 16 IKPD-VSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGA 74
+ P+ + + L L +A A+ L E+G +D A
Sbjct: 198 LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV-VHGNLACVYYEQGLIDLA 256
Query: 75 LRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNG 134
+ + +E + N L + ++G + +A + + N L N
Sbjct: 257 IDTYRRAIELQPHFPDAYCN-LANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANI 314
Query: 135 LCKVGHVKQALEVMDMMLQEGFDPD-VFTYNSLISGLCKLGEVEEAVEILNQMILRDCSP 193
+ G++++A+ + L+ P+ +++L S L + G+++EA+ + I P
Sbjct: 315 KREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--P 370
Query: 194 N-TITYNTLISTLCK 207
Y+ + +TL +
Sbjct: 371 TFADAYSNMGNTLKE 385
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (85), Expect = 0.004
Identities = 56/398 (14%), Positives = 109/398 (27%), Gaps = 48/398 (12%)
Query: 172 KLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVC 231
+ G+ E A Q + R NT L S + +++ + + + P +
Sbjct: 11 QAGDFEAAERHCMQ-LWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK--QNPLLA 67
Query: 232 TFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEM 291
S + G + + +PD + + + E
Sbjct: 68 EAYSNL-GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVS 126
Query: 292 ESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRV 351
+ L + L R+EEA+ + + I+ +V ++ L +
Sbjct: 127 ALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA-IETQPNFAVAWSNLGCVFNAQGEI 185
Query: 352 EDAAQLMDQMIMEGLKPDKF-TYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGT 410
A ++ + L P+ Y +L A RA S
Sbjct: 186 WLAIHHFEKAV--TLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH------- 236
Query: 411 LIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKA 470
+ + + + A+ +R +E
Sbjct: 237 -----------------------------AVVHGNLACVYYEQGLIDLAIDTYRRAIE-L 266
Query: 471 DPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETL 530
P Y ++ L G EA D L S LA G E
Sbjct: 267 QPHFPDAYCNLANALKEKGSVA-EAEDCYNTALRLCP-THADSLNNLANIKREQGNIEEA 324
Query: 531 VELIDMVMDKA-KFSDRETSMVRGFLKIRKFQDALATF 567
V L ++ +F+ +++ + K Q+AL +
Sbjct: 325 VRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 587 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.97 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.97 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.8 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.77 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.56 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.55 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.52 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.48 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.48 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.44 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.42 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.42 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.4 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.38 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.18 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.15 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.12 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.09 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.08 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.07 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.07 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.03 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.03 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.97 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.97 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.95 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.94 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.93 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.93 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.88 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.78 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.75 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.74 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.73 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.7 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.69 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.65 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.64 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.61 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.61 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.6 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.51 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.49 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.26 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.25 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.21 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.15 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.12 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.11 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.06 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.05 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.0 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.0 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.96 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.83 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.6 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.31 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.23 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.03 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.35 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.61 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 92.72 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 88.95 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 87.13 | |
| d1bpoa1 | 157 | Clathrin heavy-chain linker domain {Rat (Rattus no | 86.56 | |
| d1bpoa1 | 157 | Clathrin heavy-chain linker domain {Rat (Rattus no | 85.65 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=6.9e-27 Score=221.11 Aligned_cols=381 Identities=17% Similarity=0.091 Sum_probs=230.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 038622 166 LISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSN 245 (587)
Q Consensus 166 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 245 (587)
++..+.+.|++++|++.|+++.... |.++.++..++.++...|++++|+..++++.+.. +.+..++..++.++...|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence 3444555566666666666665543 3345555666666666666666666666655542 2245555666666666666
Q ss_pred hHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 038622 246 FDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDE 325 (587)
Q Consensus 246 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 325 (587)
+++|...+....... +.+..............+....+........... .................+....+...+..
T Consensus 83 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred ccccccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHH
Confidence 666666666665543 3334444444444444444444444444443332 23333444444555556666666666666
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc
Q 038622 326 MEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDI 405 (587)
Q Consensus 326 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 405 (587)
..... |.....+..++..+...|+++.|...+++++... +.+...+..++.++...|++++|...++.....+.. +.
T Consensus 161 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~ 237 (388)
T d1w3ba_ 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CH
T ss_pred hhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HH
Confidence 55543 4455566666666666777777777777666642 224455666666677777777777777766664322 44
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038622 406 VTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGL 485 (587)
Q Consensus 406 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 485 (587)
..+..++.++...|++++|...++++.+..+. +..++..++.++...|++++|++.++.+.... |.+...+..++..+
T Consensus 238 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 315 (388)
T d1w3ba_ 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHH
Confidence 55666677777777777777777777665332 45667777777777777777777777776653 56666666677777
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHH
Q 038622 486 CNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFLKIR 558 (587)
Q Consensus 486 ~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 558 (587)
...|+ +++|++.++++++ +.| ++.++..++.+|.+.|++++|+..++++++.+|.. +.+..++.+|.+.|
T Consensus 316 ~~~~~-~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 316 REQGN-IEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HTTTC-HHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHCCC-HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 77777 7777777777776 345 56677777777777777777777777777777765 33555555554443
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2.9e-26 Score=216.82 Aligned_cols=382 Identities=16% Similarity=0.082 Sum_probs=265.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCH
Q 038622 132 VNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQV 211 (587)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 211 (587)
+..+.+.|++++|++.++++.+.. +-+..++..++.++...|++++|+..|++++..+ |.+..++..++.++...|++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccc
Confidence 344445555555555555555432 1134445555555555555555555555555543 33455555566666666666
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 038622 212 EEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEM 291 (587)
Q Consensus 212 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 291 (587)
++|+..+........ .+..............+....+........... .................+....+...+...
T Consensus 84 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred ccccccccccccccc-ccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHh
Confidence 666666665555422 233333334444444444444444444444332 233444444555566666777777777766
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh
Q 038622 292 ESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKF 371 (587)
Q Consensus 292 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 371 (587)
.... +.....+..++..+...|++++|...+++..... |.+...+..++..+...|++++|...+++..... +.+..
T Consensus 162 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 238 (388)
T d1w3ba_ 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHH
T ss_pred hccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHH
Confidence 6554 4556677777778888888888888888877664 5566777788888888888888888888887753 33566
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 038622 372 TYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALF 451 (587)
Q Consensus 372 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 451 (587)
.+..++.++...|++++|...++++++..+. +...+..++.++...|++++|.+.++.+....+ .+...+..++.++.
T Consensus 239 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 316 (388)
T d1w3ba_ 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCC-ccchhhhHHHHHHH
Confidence 7777888888889999999999888875433 567788889999999999999999998887643 36778889999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCC
Q 038622 452 RRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGK 526 (587)
Q Consensus 452 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 526 (587)
..|++++|+..|+++++.. |.+...+..++.++...|+ +++|+..++++++ +.| ++.++..++.+|.++||
T Consensus 317 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 317 EQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGK-LQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTC-CHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999864 6677788889999999999 9999999999998 567 68899999999998886
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=1.6e-17 Score=151.63 Aligned_cols=275 Identities=14% Similarity=0.062 Sum_probs=187.8
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 038622 268 YNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCK 347 (587)
Q Consensus 268 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 347 (587)
....+..+...|++++|+..|+++++.. |.+..++..++.++...|++++|...+.++.+.. |.+...+..++.++..
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 99 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTN 99 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccc
Confidence 3456666777777777777777777765 5566677777777777777777777777776654 4566677777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHH
Q 038622 348 SRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKL 427 (587)
Q Consensus 348 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 427 (587)
.|++++|...++++... .|+............. . .+..........+...+.+.+|...
T Consensus 100 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~---------------~----~~~~~~~~~~~~~~~~~~~~~a~~~ 158 (323)
T d1fcha_ 100 ESLQRQACEILRDWLRY--TPAYAHLVTPAEEGAG---------------G----AGLGPSKRILGSLLSDSLFLEVKEL 158 (323)
T ss_dssp TTCHHHHHHHHHHHHHT--STTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHh--ccchHHHHHhhhhhhh---------------h----cccccchhhHHHHHHhhHHHHHHHH
Confidence 77777777777777663 2322111000000000 0 0000111112233455677888899
Q ss_pred HHHHHHcCCC-CChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 038622 428 LRSIQMKGIV-LTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERG 506 (587)
Q Consensus 428 ~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 506 (587)
++++....+. ++...+..++..+...|++++|+..|++++... |.+...+..++..+...|+ +++|++.++++++.
T Consensus 159 ~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~- 235 (323)
T d1fcha_ 159 FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQ-SEEAVAAYRRALEL- 235 (323)
T ss_dssp HHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhccccccc-chhHHHHHHHHHHH-
Confidence 9888875432 345778889999999999999999999999874 6678889999999999999 99999999999984
Q ss_pred CCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc-hhhhhhhHHH-HHHHHHHHHhcch
Q 038622 507 FLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR-ETSMVRGFLK-IRKFQDALATFGD 569 (587)
Q Consensus 507 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~A~~~~~~ 569 (587)
.| ++.++..+|.+|.+.|++++|+..|+++++..|.+.. ....+..+.. .+++..|+...++
T Consensus 236 -~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~ 300 (323)
T d1fcha_ 236 -QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 300 (323)
T ss_dssp -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTC
T ss_pred -hhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCC
Confidence 56 7889999999999999999999999999998887632 2222222221 2445555555544
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=2.7e-16 Score=143.27 Aligned_cols=277 Identities=13% Similarity=0.007 Sum_probs=200.7
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 038622 229 DVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLID 308 (587)
Q Consensus 229 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 308 (587)
+.......+..+...|++++|+..|+++++.. |.+..+|..++.++...|++++|+..+.++.+.. |.+...+..++.
T Consensus 18 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~ 95 (323)
T d1fcha_ 18 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAV 95 (323)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccc
Confidence 33344567778899999999999999999885 5568899999999999999999999999999876 667888999999
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHH
Q 038622 309 GFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKR 388 (587)
Q Consensus 309 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 388 (587)
++...|++++|.+.++.+.... +.............. ..+.......+..+...+.+.+
T Consensus 96 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~ 154 (323)
T d1fcha_ 96 SFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAG--------------------GAGLGPSKRILGSLLSDSLFLE 154 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC-----------------------------------CTTHHHHHHHHHHH
T ss_pred cccccccccccccchhhHHHhc-cchHHHHHhhhhhhh--------------------hcccccchhhHHHHHHhhHHHH
Confidence 9999999999999999988764 211111100000000 0000001111122334456677
Q ss_pred HHHHHHHHHHCCCC-CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038622 389 AADIVQNMTSNGCE-PDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMM 467 (587)
Q Consensus 389 A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 467 (587)
|...+.+++...+. ++...+..++..+...|++++|+..++++....+. +...|..++.++...|++++|++.|++++
T Consensus 155 a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al 233 (323)
T d1fcha_ 155 VKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRAL 233 (323)
T ss_dssp HHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHH
Confidence 88888877764322 24556778888888999999999999998886443 56788899999999999999999999998
Q ss_pred hcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-C-----------HHHHHHHHHHHHccCCHhHHHHH
Q 038622 468 EKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-E-----------FSSFYMLAEGLVSLGKEETLVEL 533 (587)
Q Consensus 468 ~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~-----------~~~~~~l~~~~~~~g~~~~A~~~ 533 (587)
+.. |.+...+..++.++...|+ +++|+..|+++++. .| + ...+..+..++...|+.+.+...
T Consensus 234 ~~~-p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 234 ELQ-PGYIRSRYNLGISCINLGA-HREAVEHFLEALNM--QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH--HHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHh-hccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHh--CCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 864 6677788888989999998 99999999998872 33 1 22445566666666666555433
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=7.9e-13 Score=118.29 Aligned_cols=231 Identities=7% Similarity=0.053 Sum_probs=159.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 038622 301 VTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSR-RVEDAAQLMDQMIMEGLKPDKFTYNSLLTY 379 (587)
Q Consensus 301 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (587)
.++..+...+.+.+.+++|+..++++++.+ |.+...|+..+.++...| ++++|+..+++++... +-+..+|..++.+
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 345556666777777788888888877775 566677777777777655 4788888888877753 2356677777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC----
Q 038622 380 YCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKR---- 455 (587)
Q Consensus 380 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---- 455 (587)
+...|++++|+..++++++.++. +...|..++.++...|++++|+..++++++.++. +..+|+.++.++...+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchh
Confidence 88888888888888888775443 5677777888888888888888888888876544 56677777777666554
Q ss_pred --HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcc--CCHhHH
Q 038622 456 --TTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSL--GKEETL 530 (587)
Q Consensus 456 --~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~--g~~~~A 530 (587)
+++|+..+.++++.. |.+...|..+...+. ..+ .+++.+.++++++....+ +...+..++.+|... ++.+.+
T Consensus 200 ~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~-~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~ 276 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQ-DRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 276 (315)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHT-TTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHH-hcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHH
Confidence 578888888888874 667777776666544 344 678888888887643222 455666677666432 444444
Q ss_pred HHHHHHHH
Q 038622 531 VELIDMVM 538 (587)
Q Consensus 531 ~~~~~~~~ 538 (587)
...++++.
T Consensus 277 ~~~~~ka~ 284 (315)
T d2h6fa1 277 EDILNKAL 284 (315)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=1.1e-12 Score=117.38 Aligned_cols=230 Identities=11% Similarity=0.100 Sum_probs=184.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCcchHHHHHH
Q 038622 335 SVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAG-DIKRAADIVQNMTSNGCEPDIVTYGTLIG 413 (587)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 413 (587)
...+..+...+.+.+.+++|+..+++++..+ +-+...|+..+.++...| ++++|+..++.+++..+. +..+|..++.
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhH
Confidence 3456667777888999999999999999963 235667888888888876 599999999999987554 6889999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCC--
Q 038622 414 GLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGP-- 491 (587)
Q Consensus 414 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-- 491 (587)
++...|++++|++.++++.+..+. +..+|..++.++...|++++|+..++++++.+ |.+...|...+.++...+..
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccch
Confidence 999999999999999999997555 67899999999999999999999999999985 77788888887777666551
Q ss_pred ---HHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc---hhhhhhhHHH--------
Q 038622 492 ---IGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR---ETSMVRGFLK-------- 556 (587)
Q Consensus 492 ---~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~~~-------- 556 (587)
+++|+..+.++++. .| +..++..++.++...| .+++.+.++.+.+..|.... ...++.+|..
T Consensus 199 ~~~~~~ai~~~~~al~~--~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~ 275 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 275 (315)
T ss_dssp HHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred hhhhHHhHHHHHHHHHh--CCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHH
Confidence 47899999999984 56 7888888888876655 68999999999998887643 2334444432
Q ss_pred -HHHHHHHHHhcchhh
Q 038622 557 -IRKFQDALATFGDIL 571 (587)
Q Consensus 557 -~~~~~~A~~~~~~~~ 571 (587)
...+.+|+..+....
T Consensus 276 ~~~~~~ka~~l~~~l~ 291 (315)
T d2h6fa1 276 KEDILNKALELCEILA 291 (315)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 344566666555443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.52 E-value=9.9e-14 Score=126.39 Aligned_cols=263 Identities=8% Similarity=-0.026 Sum_probs=185.3
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHH----------HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-
Q 038622 281 LEEALKLLKEMESSGCARNVVTYNTLIDG----------FCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSR- 349 (587)
Q Consensus 281 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 349 (587)
.++|++++++++..+ |.+..+|+..... +...|++++|+..++.+...+ |.+...|..++.++...+
T Consensus 45 ~~~al~~~~~~l~~~-P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~ 122 (334)
T d1dcea1 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (334)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred cHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhcc
Confidence 456666666666554 3344444332222 223345778888888887765 667777777777766655
Q ss_pred -CHHHHHHHHHHHHHcCCCCCHhhH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHH
Q 038622 350 -RVEDAAQLMDQMIMEGLKPDKFTY-NSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKL 427 (587)
Q Consensus 350 -~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 427 (587)
++++|...+.+++.... ++...+ ...+..+...+.++.|+..++.++..++. +...|..++.++...|++++|...
T Consensus 123 ~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~~ 200 (334)
T d1dcea1 123 PNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQ 200 (334)
T ss_dssp CCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHHH
Confidence 47889999999888532 344444 34556777788999999999988886554 677888888899999988888766
Q ss_pred HHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 038622 428 LRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGF 507 (587)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~ 507 (587)
++.+... .|. .......+...+..+++...+...+... +++...+..++..+...++ +++|...+.++++ .
T Consensus 201 ~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~--~ 271 (334)
T d1dcea1 201 GRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQS-ELESCKELQELEP--E 271 (334)
T ss_dssp CSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHH-HHHHHHHHHHHCT--T
T ss_pred HHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhh-HHHHHHHHHHHHh--h
Confidence 6655542 111 1223344556677888888888888864 5555556666667777788 9999999999887 3
Q ss_pred CC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC-chhhhhhhHHH
Q 038622 508 LP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD-RETSMVRGFLK 556 (587)
Q Consensus 508 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~ 556 (587)
.| +..++..++.++...|++++|+..++++++.+|... .|..+...+..
T Consensus 272 ~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 272 NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence 46 678888999999999999999999999999999653 35555555553
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=9e-12 Score=114.84 Aligned_cols=272 Identities=11% Similarity=0.004 Sum_probs=168.4
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC--C---CCHHHHHH
Q 038622 270 MLIDSLCSRGMLEEALKLLKEMESSGCARN----VVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGI--S---RNSVTYNT 340 (587)
Q Consensus 270 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~ 340 (587)
..+..+...|++++|+.++++++......+ ..++..++.++...|++++|...++++..... + .....+..
T Consensus 17 lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 96 (366)
T d1hz4a_ 17 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 96 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 344555666666666666666665431111 12445566666667777777777766543210 0 11223445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCcchHH
Q 038622 341 LIDGLCKSRRVEDAAQLMDQMIME----GLKPD---KFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCE----PDIVTYG 409 (587)
Q Consensus 341 l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~ 409 (587)
+...+...|++..+...+.+.... +.... ...+..+...+...|+++.+...+......... .....+.
T Consensus 97 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 176 (366)
T d1hz4a_ 97 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 176 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 556666777777777777766541 11111 123445666777788888888888777653211 1123345
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc--CCCCC----hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CHHHHHH
Q 038622 410 TLIGGLCKAGRVEVASKLLRSIQMK--GIVLT----PQAYNPVIQALFRRKRTTEAMRLFREMMEKADPP---DALTYKH 480 (587)
Q Consensus 410 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~ 480 (587)
..+..+...++...+...+.+.... ..... ...+...+..+...|++++|...+++........ ....+..
T Consensus 177 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 256 (366)
T d1hz4a_ 177 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 256 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 5566677778888888777766543 11111 1345566777788888999988888887653221 2334455
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHH----cCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCC
Q 038622 481 VFRGLCNGGGPIGEAVDFVIEMLE----RGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAK 542 (587)
Q Consensus 481 l~~~~~~~~~~~~~A~~~~~~~~~----~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 542 (587)
++..+...|+ +++|...+++++. .+..| ...++..++.+|...|++++|.+.++++++..+
T Consensus 257 la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~ 322 (366)
T d1hz4a_ 257 IARAQILLGE-FEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 322 (366)
T ss_dssp HHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC-HHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 6777888888 8999988888773 23334 356778888999999999999999998877654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=1.3e-12 Score=114.19 Aligned_cols=226 Identities=10% Similarity=-0.039 Sum_probs=149.0
Q ss_pred CHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 038622 315 RIEEAEEIFDEMEIQGIS---RNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAAD 391 (587)
Q Consensus 315 ~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 391 (587)
+.+.++..++++...... ....++..++.+|.+.|++++|+..|++++... +.++.++..++.++...|++++|+.
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhh
Confidence 345555556665543211 123467777888888999999999999988853 2366788888899999999999999
Q ss_pred HHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 038622 392 IVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKAD 471 (587)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 471 (587)
.|+++++.++. +..++..++.++...|++++|...++++.+..+. +......+...+...+..+.+..+........
T Consensus 93 ~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 169 (259)
T d1xnfa_ 93 AFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD- 169 (259)
T ss_dssp HHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC-
T ss_pred hhhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc-
Confidence 99998886443 5667888889999999999999999998886433 44444455555566666555555555555432
Q ss_pred CCCHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCch
Q 038622 472 PPDALTYKHVFRGLCNGGG---PIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDRE 547 (587)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~---~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 547 (587)
+....+. ++..+..... ..+.+...+..... ..| ...++..+|.+|...|++++|+..+++++..+|.+...
T Consensus 170 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 245 (259)
T d1xnfa_ 170 -KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTS--LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 245 (259)
T ss_dssp -CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred -hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhh--cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHH
Confidence 2222221 2222211111 02222222222222 123 35677889999999999999999999999999987544
Q ss_pred h
Q 038622 548 T 548 (587)
Q Consensus 548 ~ 548 (587)
+
T Consensus 246 ~ 246 (259)
T d1xnfa_ 246 H 246 (259)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.44 E-value=1.4e-11 Score=110.13 Aligned_cols=185 Identities=11% Similarity=-0.002 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 038622 387 KRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREM 466 (587)
Q Consensus 387 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 466 (587)
++|..+|++++....+.+...+...+......|+++.|..++++++...+......|..++....+.|+.+.|.++|+++
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a 160 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 44555555554432222333444444555555555555555555554322222234555555555555555555555555
Q ss_pred HhcCCCCCHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 467 MEKADPPDALTYKHVFRGLC-NGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 467 ~~~~~~~~~~~~~~l~~~~~-~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
++.+ +.+...+...+.... ..|+ .+.|..+++++++.. +.++..+...++.+...|+++.|+.+|+++++..|.+.
T Consensus 161 l~~~-~~~~~~~~~~a~~e~~~~~~-~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 161 REDA-RTRHHVYVTAALMEYYCSKD-KSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HTST-TCCTHHHHHHHHHHHHTSCC-HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHhC-CCcHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 5542 333333333332222 2233 555555555555431 22455555555555555555555555555555444321
Q ss_pred -----chhhhhhhHHHHHHHHHHHHhcchhhhcc
Q 038622 546 -----RETSMVRGFLKIRKFQDALATFGDILDSR 574 (587)
Q Consensus 546 -----~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 574 (587)
.|..++..-...|+.+.+.+.++++.+..
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~ 271 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 23444444445555555555555544444
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.42 E-value=1.1e-12 Score=119.23 Aligned_cols=265 Identities=9% Similarity=-0.013 Sum_probs=183.1
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH----------HccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 038622 244 SNFDVAMELFQEMKTKGCQPDEFTYNMLIDSL----------CSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKL 313 (587)
Q Consensus 244 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 313 (587)
...++|++++++++... |.+...|......+ ...|.+++|+.+++.+.+.+ |.+...+..++.++...
T Consensus 43 ~~~~~al~~~~~~l~~~-P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~ 120 (334)
T d1dcea1 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (334)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred cccHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHh
Confidence 33467777777777663 33444444333222 22344678888888887765 56777777777777665
Q ss_pred C--CHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 038622 314 K--RIEEAEEIFDEMEIQGISRNSVTY-NTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAA 390 (587)
Q Consensus 314 ~--~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 390 (587)
+ ++++|+..+..+.... +++...+ ......+...+.++.|+..+++++...+ -+...|..++.++...|++++|.
T Consensus 121 ~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~~~~~~~~~~A~ 198 (334)
T d1dcea1 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSG 198 (334)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCHHHHH
Confidence 5 4788888888888775 4455554 3455677778888999998888887642 36677888888888888887776
Q ss_pred HHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038622 391 DIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKA 470 (587)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 470 (587)
..++..... .|. ...+...+...+..+++...+.+.....+. +...+..++..+...|++++|+..+.+.....
T Consensus 199 ~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 272 (334)
T d1dcea1 199 PQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAE-PLFRCELSVEKSTVLQSELESCKELQELEPEN 272 (334)
T ss_dssp SCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCC-CSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 655544332 111 122334455567777888888887775432 45566677788888889999999999888753
Q ss_pred CCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 038622 471 DPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLV 522 (587)
Q Consensus 471 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 522 (587)
|.+...+..++..+...|+ +++|+++++++++ +.| +...|..|+..+.
T Consensus 273 -p~~~~~~~~l~~~~~~~~~-~~eA~~~~~~ai~--ldP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 273 -KWCLLTIILLMRALDPLLY-EKETLQYFSTLKA--VDPMRAAYLDDLRSKFL 321 (334)
T ss_dssp -HHHHHHHHHHHHHHCTGGG-HHHHHHHHHHHHH--HCGGGHHHHHHHHHHHH
T ss_pred -chHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH--HCcccHHHHHHHHHHHh
Confidence 4456677788888888888 9999999999998 567 5667777776665
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=1e-12 Score=114.86 Aligned_cols=221 Identities=13% Similarity=-0.015 Sum_probs=155.6
Q ss_pred CHHHHHHHHHHHHHcCCCC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHH
Q 038622 350 RVEDAAQLMDQMIMEGLKP---DKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASK 426 (587)
Q Consensus 350 ~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 426 (587)
+.+.++..+++++...... ...++..++.+|.+.|++++|+..|+++++..+. +..++..++.++...|++++|++
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhh
Confidence 4556666677776542211 2346778889999999999999999999986544 67889999999999999999999
Q ss_pred HHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 038622 427 LLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERG 506 (587)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 506 (587)
.|+++.+..+. +..++..++.++...|++++|+..|+++++.. |.+......+.......+. .+.+..+.......
T Consensus 93 ~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~- 168 (259)
T d1xnfa_ 93 AFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDE-KQAKEVLKQHFEKS- 168 (259)
T ss_dssp HHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHS-
T ss_pred hhhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhh-HHHHHHHHHHhhcc-
Confidence 99999997544 56789999999999999999999999999974 5555555455545555554 44454544544442
Q ss_pred CCCCHHHHHHHHHHHHc----cCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHHHHHHHHHhcchhhhccCch
Q 038622 507 FLPEFSSFYMLAEGLVS----LGKEETLVELIDMVMDKAKFS-DRETSMVRGFLKIRKFQDALATFGDILDSRMPR 577 (587)
Q Consensus 507 ~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 577 (587)
.+....+ .+...+.. .+..+.+...+.......|.. +.+..++.+|...|++++|+..|++++..+|..
T Consensus 169 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 242 (259)
T d1xnfa_ 169 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 242 (259)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred -chhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 2322212 12222222 222344444444333333332 346778999999999999999999999887643
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=4.9e-10 Score=102.85 Aligned_cols=268 Identities=13% Similarity=0.085 Sum_probs=142.8
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHhHHHH
Q 038622 201 LISTLCKENQVEEATELARVLTSKGILPD----VCTFNSLIQGLCLTSNFDVAMELFQEMKTKGC-QPD----EFTYNML 271 (587)
Q Consensus 201 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l 271 (587)
.+.++...|++++|+.++++..+.....+ ..++..+..++...|++++|...|+.+..... .++ ...+..+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 34445555555555555555554321111 12344455556666666666666665543210 011 2334455
Q ss_pred HHHHHccCChHHHHHHHHHHHHC----CCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC----CCHHHHHH
Q 038622 272 IDSLCSRGMLEEALKLLKEMESS----GCAR---NVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGIS----RNSVTYNT 340 (587)
Q Consensus 272 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~ 340 (587)
...+...|++..+...+...... ..+. ....+..++..+...|+++.+...+......... .....+..
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 177 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 55666666776666666655431 1111 1123444556666677777777777666543211 12233444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC--CCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---cchHHHH
Q 038622 341 LIDGLCKSRRVEDAAQLMDQMIMEG--LKPD----KFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPD---IVTYGTL 411 (587)
Q Consensus 341 l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l 411 (587)
....+...+++..+...+.+..... .... ...+..++..+...|+++.|...++.........+ ...+..+
T Consensus 178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 257 (366)
T d1hz4a_ 178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 4555666677777776666655421 1111 12344455566677777777777776655322211 2234456
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc----CCCCC-hHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038622 412 IGGLCKAGRVEVASKLLRSIQMK----GIVLT-PQAYNPVIQALFRRKRTTEAMRLFREMME 468 (587)
Q Consensus 412 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (587)
+.++...|++++|...++++... +..|+ ..++..++.++...|++++|.+.++++++
T Consensus 258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66777777777777777766532 22222 24566677777777777777777777665
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.38 E-value=1.7e-10 Score=102.92 Aligned_cols=194 Identities=10% Similarity=0.062 Sum_probs=153.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 038622 349 RRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLL 428 (587)
Q Consensus 349 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 428 (587)
+..++|..+|++++....+.+...+...+......|+++.|..++++++...+.....+|...+....+.|+.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34578888999988754444556777888888899999999999999987543323446788888888999999999999
Q ss_pred HHHHHcCCCCChHhHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-
Q 038622 429 RSIQMKGIVLTPQAYNPVIQA-LFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERG- 506 (587)
Q Consensus 429 ~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~- 506 (587)
+++.+..+. +...|...+.. +...|+.+.|..+|+.++... |.+...|...+..+...|+ .+.|..+|+++++..
T Consensus 158 ~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~-~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 158 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNE-DNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHSSS
T ss_pred HHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCC
Confidence 999886443 45566555554 345689999999999999873 7778889999999999998 999999999999753
Q ss_pred CCC--CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 507 FLP--EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 507 ~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
..| ....|...+..-...|+.+.+..+++++.+.-|...
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 233 245677777777888999999999999998888653
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=9.7e-10 Score=89.61 Aligned_cols=142 Identities=12% Similarity=-0.055 Sum_probs=103.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCC
Q 038622 412 IGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGP 491 (587)
Q Consensus 412 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 491 (587)
+..+...|++++|++.|+++. +|++.+|..++.++...|++++|++.|+++++.+ |.....|..++.++.+.|+
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~- 85 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK- 85 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhcc-
Confidence 555667777777777776532 3466677777888888888888888888887765 6667777777777777777
Q ss_pred HHHHHHHHHHHHHcCC--------------CC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCchhhhhhhHHH
Q 038622 492 IGEAVDFVIEMLERGF--------------LP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDRETSMVRGFLK 556 (587)
Q Consensus 492 ~~~A~~~~~~~~~~~~--------------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (587)
+++|++.|+++++..- .. ...++..++.++.+.|++++|.+.++++++..|.+ .
T Consensus 86 ~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~-----------~ 154 (192)
T d1hh8a_ 86 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP-----------R 154 (192)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG-----------G
T ss_pred HHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc-----------c
Confidence 8888887877775210 01 14677889999999999999999999999988875 2
Q ss_pred HHHHHHHHHhcchh
Q 038622 557 IRKFQDALATFGDI 570 (587)
Q Consensus 557 ~~~~~~A~~~~~~~ 570 (587)
.+..+.|+..+.+.
T Consensus 155 ~~~~~~Al~~~~~~ 168 (192)
T d1hh8a_ 155 HSKIDKAMECVWKQ 168 (192)
T ss_dssp GGHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhh
Confidence 34566677666554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.15 E-value=2.9e-10 Score=94.51 Aligned_cols=99 Identities=9% Similarity=0.003 Sum_probs=50.5
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038622 403 PDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVF 482 (587)
Q Consensus 403 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 482 (587)
|+...+...+..+.+.|++++|+..|++++...+. ++..|..++.+|...|++++|+..|+++++.+ |.+...|..++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 34444445555555555555555555555554322 34455555555555555555555555555432 33444455555
Q ss_pred HHHHhCCCCHHHHHHHHHHHHH
Q 038622 483 RGLCNGGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 483 ~~~~~~~~~~~~A~~~~~~~~~ 504 (587)
.++...|+ +++|+..|+++++
T Consensus 80 ~~~~~l~~-~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMES-YDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTC-HHHHHHHHHHHHH
T ss_pred HHHHHCCC-HHHHHHHHHHHHH
Confidence 55555555 5555555555554
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=6.7e-10 Score=82.20 Aligned_cols=98 Identities=11% Similarity=0.084 Sum_probs=81.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 038622 444 NPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLV 522 (587)
Q Consensus 444 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 522 (587)
..-+..+...|++++|+..|.++++.. |.+...|..++.++...|+ +++|+..+.++++. .| ++..+..++.++.
T Consensus 7 ~~~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~--~p~~~~~~~~~g~~~~ 82 (117)
T d1elwa_ 7 KEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGD-YQKAYEDGCKTVDL--KPDWGKGYSRKAAALE 82 (117)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC-Ccchhhhhccccccccccc-ccccchhhhhHHHh--ccchhhHHHHHHHHHH
Confidence 345777888888899999888888875 7778888888888888888 88999999888874 45 7888888888899
Q ss_pred ccCCHhHHHHHHHHHHhcCCCCC
Q 038622 523 SLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 523 ~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
..|++++|+..++++++..|.+.
T Consensus 83 ~~~~~~~A~~~~~~a~~~~p~~~ 105 (117)
T d1elwa_ 83 FLNRFEEAKRTYEEGLKHEANNP 105 (117)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HccCHHHHHHHHHHHHHhCCCCH
Confidence 99999999999999888888764
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=3e-09 Score=78.57 Aligned_cols=108 Identities=12% Similarity=-0.098 Sum_probs=85.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhC
Q 038622 409 GTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNG 488 (587)
Q Consensus 409 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (587)
..-+..+...|++++|+..|+++++..+. +...|..++.++...|++++|+..+.++++.+ |.+...|..++.++...
T Consensus 7 ~~~g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~ 84 (117)
T d1elwa_ 7 KEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFL 84 (117)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHc
Confidence 34567778888888888888888886544 66788888888888888888888888888875 77788888888888888
Q ss_pred CCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 038622 489 GGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGL 521 (587)
Q Consensus 489 ~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 521 (587)
|+ +++|+..++++++ +.| ++.++..+.++-
T Consensus 85 ~~-~~~A~~~~~~a~~--~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 85 NR-FEEAKRTYEEGLK--HEANNPQLKEGLQNME 115 (117)
T ss_dssp TC-HHHHHHHHHHHHT--TCTTCHHHHHHHHHHH
T ss_pred cC-HHHHHHHHHHHHH--hCCCCHHHHHHHHHHh
Confidence 88 8888888888887 456 677776666553
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=2.2e-09 Score=84.75 Aligned_cols=120 Identities=17% Similarity=0.231 Sum_probs=94.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 038622 443 YNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGL 521 (587)
Q Consensus 443 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 521 (587)
+...+..+.+.|++++|+..|+++++.+ |.+...|..++.++...|+ +++|+..++++++. .| +..++..++.++
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~-~~~A~~~~~kal~~--~p~~~~a~~~~g~~~ 88 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTEC-YGYALGDATRAIEL--DKKYIKGYYRRAASN 88 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccc-cchHHHHHHHHHHH--cccchHHHHHHHHHH
Confidence 4455778889999999999999999875 7788888888888999998 99999999999984 46 788899999999
Q ss_pred HccCCHhHHHHHHHHHHhcCCCCCc-hhhhhhh--HHHHHHHHHHHHh
Q 038622 522 VSLGKEETLVELIDMVMDKAKFSDR-ETSMVRG--FLKIRKFQDALAT 566 (587)
Q Consensus 522 ~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~A~~~ 566 (587)
...|++++|+..+++++...|.+.. ...+..+ ....+.+.+|+..
T Consensus 89 ~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 89 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999887643 3333333 3445556666544
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=7.5e-09 Score=84.20 Aligned_cols=126 Identities=10% Similarity=-0.014 Sum_probs=102.5
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 038622 22 TFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFC 101 (587)
Q Consensus 22 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 101 (587)
.|+. ...+...|+++.|++.|..+. ++++.+|..++.++...|++++|+..|+++++.+ |.....|..++.++.
T Consensus 8 l~~~-g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~ 81 (192)
T d1hh8a_ 8 LWNE-GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 81 (192)
T ss_dssp HHHH-HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHH
Confidence 4544 566788999999999998864 6788999999999999999999999999999987 667889999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC----------------hhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 038622 102 KEGRIEDALSFIQEMVSEGFNPD----------------QFTYNTLVNGLCKVGHVKQALEVMDMMLQE 154 (587)
Q Consensus 102 ~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (587)
+.|++++|+..|++.+... +.+ ..++..++.++.+.|++++|.+.++.+.+.
T Consensus 82 ~~g~~~~A~~~~~kAl~~~-~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 82 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hhccHHHHHHHHHHHHHhC-ccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999999999999987642 111 134556677777778888888877777765
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.07 E-value=6.3e-10 Score=98.16 Aligned_cols=208 Identities=11% Similarity=-0.045 Sum_probs=118.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHhhHHHHHHHHHhcCCHHHH
Q 038622 315 RIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIME----GLKP-DKFTYNSLLTYYCRAGDIKRA 389 (587)
Q Consensus 315 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A 389 (587)
++++|.++|.++ +..|...+++++|.+.|.++... +..+ -..+|..++.+|...|++++|
T Consensus 32 ~~~~Aa~~y~~a---------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A 96 (290)
T d1qqea_ 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (290)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHH
Confidence 456666665543 45677788888888888887652 1111 123677777778888888888
Q ss_pred HHHHHHHHHCCCC-----CCcchHHHHHHHHHh-cCChHHHHHHHHHHHHc----CCCC-ChHhHHHHHHHHHhcCCHHH
Q 038622 390 ADIVQNMTSNGCE-----PDIVTYGTLIGGLCK-AGRVEVASKLLRSIQMK----GIVL-TPQAYNPVIQALFRRKRTTE 458 (587)
Q Consensus 390 ~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~ 458 (587)
+..+++....... .....+..++..|.. .|++++|++.++++.+. +..+ ...++..++..+...|++++
T Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~ 176 (290)
T d1qqea_ 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHH
Confidence 8887776552110 012345555555543 47777777777776543 1111 12346667777777777777
Q ss_pred HHHHHHHHHhcCCCCCH------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHc--c
Q 038622 459 AMRLFREMMEKADPPDA------LTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPE------FSSFYMLAEGLVS--L 524 (587)
Q Consensus 459 A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~------~~~~~~l~~~~~~--~ 524 (587)
|+..|+++......... ..+...+..+...|+ ++.|...++++.+ +.|. ......++.++.. .
T Consensus 177 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d-~~~A~~~~~~~~~--~~~~~~~sre~~~l~~l~~a~~~~d~ 253 (290)
T d1qqea_ 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATD-AVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDS 253 (290)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTC-HHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHH--hCCCccchHHHHHHHHHHHHHHhcCH
Confidence 77777777765211110 112233334455666 7777777777765 2331 1233445455443 3
Q ss_pred CCHhHHHHHHHHHHhc
Q 038622 525 GKEETLVELIDMVMDK 540 (587)
Q Consensus 525 g~~~~A~~~~~~~~~~ 540 (587)
+.+++|+..|+++.+.
T Consensus 254 e~~~eai~~y~~~~~l 269 (290)
T d1qqea_ 254 EQLSEHCKEFDNFMRL 269 (290)
T ss_dssp TTHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHHhhc
Confidence 4466666666554444
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.03 E-value=3.2e-07 Score=79.35 Aligned_cols=224 Identities=14% Similarity=0.010 Sum_probs=111.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHH
Q 038622 54 DERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCK----EGRIEDALSFIQEMVSEGFNPDQFTYN 129 (587)
Q Consensus 54 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 129 (587)
||..+..++..+...|++++|++.|+++.+.| +...+..|+..|.. ..++..|..+++.....+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 34555555555666666666666666665544 34445555555554 345666666666655543 223333
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 038622 130 TLVNGLCK----VGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCK----LGEVEEAVEILNQMILRDCSPNTITYNTL 201 (587)
Q Consensus 130 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 201 (587)
.+...+.. ..+.+.|...++.....|. ......+...+.. ......+...+......+ +...+..+
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L 148 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 148 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhh
Confidence 33333322 3445556666665555432 1122222222221 233445555555544432 34445555
Q ss_pred HHHHhc----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 038622 202 ISTLCK----ENQVEEATELARVLTSKGILPDVCTFNSLIQGLCL----TSNFDVAMELFQEMKTKGCQPDEFTYNMLID 273 (587)
Q Consensus 202 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 273 (587)
+..+.. ..+...+..+++...+.| +......+...+.. ..+++.|..+|....+.| ++..+..++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~ 222 (265)
T d1ouva_ 149 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 222 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred hhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHH
Confidence 555543 334445555555555433 44444444444443 345666666666665554 3445555555
Q ss_pred HHHc----cCChHHHHHHHHHHHHCC
Q 038622 274 SLCS----RGMLEEALKLLKEMESSG 295 (587)
Q Consensus 274 ~~~~----~~~~~~a~~~~~~~~~~~ 295 (587)
+|.. ..+.++|.++|++....|
T Consensus 223 ~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 223 MQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 5543 235566666666665554
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.03 E-value=1e-06 Score=76.01 Aligned_cols=223 Identities=10% Similarity=-0.037 Sum_probs=123.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 038622 302 TYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCK----SRRVEDAAQLMDQMIMEGLKPDKFTYNSLL 377 (587)
Q Consensus 302 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 377 (587)
.+..++..+...+++++|++.|++..+.| +...+..+...|.. ..++..|...+......+ +......++
T Consensus 4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~ 77 (265)
T d1ouva_ 4 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 77 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhccc
Confidence 34444444444555555555555554433 33334444444443 345555555555555432 222222332
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 038622 378 TYYCR----AGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCK----AGRVEVASKLLRSIQMKGIVLTPQAYNPVIQA 449 (587)
Q Consensus 378 ~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 449 (587)
..+.. ..+.+.|...++.....|.. .....++..+.. ......+...+...... .+...+..++..
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~ 151 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSL 151 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred cccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhhh
Confidence 22221 34555566666655554321 222223333322 33455566666655542 245566666666
Q ss_pred HHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038622 450 LFR----RKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCN----GGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGL 521 (587)
Q Consensus 450 ~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 521 (587)
+.. ..+...+...++.+.+.| +......++..+.. ..+ +++|+.+|+++.+.| ++.++..|+.+|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d-~~~A~~~~~~aa~~g---~~~a~~~LG~~y 224 (265)
T d1ouva_ 152 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKN-FKEALARYSKACELE---NGGGCFNLGAMQ 224 (265)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCC-HHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred hccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccc-hhhhhhhHhhhhccc---CHHHHHHHHHHH
Confidence 664 456677777777777643 45555556555544 334 888888888888754 567778888888
Q ss_pred Hc----cCCHhHHHHHHHHHHhcCCC
Q 038622 522 VS----LGKEETLVELIDMVMDKAKF 543 (587)
Q Consensus 522 ~~----~g~~~~A~~~~~~~~~~~~~ 543 (587)
.. ..++++|.++|+++.+.+..
T Consensus 225 ~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 225 YNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 75 34788888888888887754
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=1e-08 Score=80.74 Aligned_cols=121 Identities=15% Similarity=-0.033 Sum_probs=94.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 038622 408 YGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCN 487 (587)
Q Consensus 408 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (587)
+...+..|.+.|++++|+..|+++++.++. +...|..++.++...|++++|+..|+++++.+ |.+...+..++.++..
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHH
Confidence 444567788899999999999999887544 67888899999999999999999999999875 6777888888889999
Q ss_pred CCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH--HccCCHhHHHHH
Q 038622 488 GGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGL--VSLGKEETLVEL 533 (587)
Q Consensus 488 ~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~--~~~g~~~~A~~~ 533 (587)
.|+ +++|+..++++++. .| ++.++..+..+. ...+.+++|...
T Consensus 91 ~g~-~~eA~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 91 LGK-FRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp TTC-HHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCC-HHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999 99999999999984 46 566666665543 333445555443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.97 E-value=2.3e-09 Score=78.47 Aligned_cols=89 Identities=10% Similarity=-0.000 Sum_probs=57.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHH
Q 038622 480 HVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFLKI 557 (587)
Q Consensus 480 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 557 (587)
..+..+...|+ +++|+..++++++. .| ++.++..+|.++.+.|++++|+..++++++.+|.. +.+..++.+|...
T Consensus 21 ~~g~~~~~~g~-~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 21 EEGLSMLKLAN-LAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhh-hHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence 34445566666 66666666666663 34 56666666666666666666666666666666665 3466666666666
Q ss_pred HHHHHHHHhcchhh
Q 038622 558 RKFQDALATFGDIL 571 (587)
Q Consensus 558 ~~~~~A~~~~~~~~ 571 (587)
|++++|++.+++++
T Consensus 98 g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 98 HNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 66666666666653
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.95 E-value=8.2e-09 Score=90.81 Aligned_cols=197 Identities=11% Similarity=0.001 Sum_probs=100.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----CCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CC--ChHhHHHH
Q 038622 377 LTYYCRAGDIKRAADIVQNMTSN----GCEP-DIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGI---VL--TPQAYNPV 446 (587)
Q Consensus 377 ~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l 446 (587)
+..|...+++++|...|.++.+. +-.+ ...+|..++.+|.+.|++++|.+.++++.+... .+ ....+..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 34466666666666666665542 1111 124566666666666677776666666554310 00 02344555
Q ss_pred HHHHHh-cCCHHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-----C-HHHH
Q 038622 447 IQALFR-RKRTTEAMRLFREMMEK----ADPP-DALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-----E-FSSF 514 (587)
Q Consensus 447 ~~~~~~-~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-----~-~~~~ 514 (587)
+..+.. .|++++|++.|+++.+. +.++ ...++..++..+...|+ +++|+..+++++...... . ...+
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~-y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ-YIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcCh-HHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 555543 46677777666666542 1111 12345556666666666 677777766666531110 0 1233
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHhcCCCCC-c-----hhhhhhhHHH--HHHHHHHHHhcchhhhcc
Q 038622 515 YMLAEGLVSLGKEETLVELIDMVMDKAKFSD-R-----ETSMVRGFLK--IRKFQDALATFGDILDSR 574 (587)
Q Consensus 515 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~-----~~~~~~~~~~--~~~~~~A~~~~~~~~~~~ 574 (587)
...+.++...|+++.|...++++.+..|.-. . ...++.++-. .+.+.+|+..|.++....
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD 270 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD 270 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC
Confidence 4555566666667777766666666655321 1 1222222222 234666666666555443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.94 E-value=8.2e-09 Score=85.42 Aligned_cols=100 Identities=13% Similarity=-0.082 Sum_probs=76.1
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHH
Q 038622 368 PDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVI 447 (587)
Q Consensus 368 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 447 (587)
|+...+...+..+...|++++|+..|++++...+. +...|..++.+|.+.|++++|+..++++++..+. +..+|..++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence 56667777788888888888888888887776433 5667777888888888888888888888775332 456778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 038622 448 QALFRRKRTTEAMRLFREMMEK 469 (587)
Q Consensus 448 ~~~~~~g~~~~A~~~~~~~~~~ 469 (587)
.++...|++++|+..|++++..
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 8888888888888888887764
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.93 E-value=3.8e-09 Score=77.24 Aligned_cols=94 Identities=11% Similarity=0.051 Sum_probs=81.2
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 038622 441 QAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAE 519 (587)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 519 (587)
..+...+..+.+.|++++|+..|++++..+ |.+...|..++.++...|+ +++|+..++++++ +.| +..++..++.
T Consensus 17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~-~~~A~~~~~~al~--~~p~~~~a~~~la~ 92 (112)
T d1hxia_ 17 ENPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEK-DGLAIIALNHARM--LDPKDIAVHAALAV 92 (112)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhh-HHHhhcccccccc--cccccccchHHHHH
Confidence 345567888899999999999999999875 6678888889999999998 9999999999998 456 7889999999
Q ss_pred HHHccCCHhHHHHHHHHHH
Q 038622 520 GLVSLGKEETLVELIDMVM 538 (587)
Q Consensus 520 ~~~~~g~~~~A~~~~~~~~ 538 (587)
+|...|++++|++.+++.+
T Consensus 93 ~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 93 SHTNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHh
Confidence 9999999999999998864
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=3.5e-09 Score=78.25 Aligned_cols=102 Identities=15% Similarity=0.133 Sum_probs=82.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 038622 444 NPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGG--PIGEAVDFVIEMLERGFLPE-FSSFYMLAEG 520 (587)
Q Consensus 444 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 520 (587)
..++..+...+++++|.+.|++++..+ |.+..++..++.++...++ ++++|+.+++++++.+..|+ ..++..||.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 457778888899999999999999976 7788888888888876544 15579999999987432222 3578899999
Q ss_pred HHccCCHhHHHHHHHHHHhcCCCCCc
Q 038622 521 LVSLGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 521 ~~~~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
|.+.|++++|++.++++++.+|.+..
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~P~~~~ 107 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTEPQNNQ 107 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhhhHHHHHHHHHHHHhCcCCHH
Confidence 99999999999999999999998754
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=2.2e-08 Score=79.55 Aligned_cols=83 Identities=11% Similarity=-0.018 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc-hhhhhhhH
Q 038622 477 TYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR-ETSMVRGF 554 (587)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~ 554 (587)
.+..++.++...|+ +++|+..++++++. .| ++.++..+|.+|...|++++|+..|+++++.+|.+.. ...+..+.
T Consensus 64 ~~~nla~~y~k~~~-~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 140 (170)
T d1p5qa1 64 SHLNLAMCHLKLQA-FSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ 140 (170)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhh-cccccchhhhhhhc--cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45567778889999 99999999999984 56 7999999999999999999999999999999997643 44555555
Q ss_pred HHHHHHHH
Q 038622 555 LKIRKFQD 562 (587)
Q Consensus 555 ~~~~~~~~ 562 (587)
-+.+....
T Consensus 141 ~~~~~~~~ 148 (170)
T d1p5qa1 141 QRIRRQLA 148 (170)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=2.1e-08 Score=75.25 Aligned_cols=100 Identities=8% Similarity=0.126 Sum_probs=78.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-C-------HHH
Q 038622 442 AYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-E-------FSS 513 (587)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~-------~~~ 513 (587)
.+..++..+...|++++|+..|.++++.+ |.+...+..++.++...|+ +++|+..++++++. .| + ..+
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~l--~~~~~~~~~~~a~~ 81 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGD-YNKCRELCEKAIEV--GRENREDYRQIAKA 81 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH--HHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCc-hHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 34567888888888888888888888875 6677788888888888888 88888888888863 23 1 236
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 514 FYMLAEGLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 514 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
+..++.++...+++++|+..+++++...+.++
T Consensus 82 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~ 113 (128)
T d1elra_ 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHRTPD 113 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHH
Confidence 66788888888899999999988888776543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=1.3e-08 Score=76.41 Aligned_cols=102 Identities=13% Similarity=0.133 Sum_probs=82.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC-chhh-----
Q 038622 477 TYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD-RETS----- 549 (587)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~----- 549 (587)
.+..++..+...|+ +++|+..|.++++. .| +..++..++.+|.+.|++++|+..++++++.+|... .+..
T Consensus 6 ~~k~~G~~~~~~~~-y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~ 82 (128)
T d1elra_ 6 KEKELGNDAYKKKD-FDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (128)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 35567888999999 99999999999995 46 799999999999999999999999999999888653 3444
Q ss_pred --hhhhHHHHHHHHHHHHhcchhhhccCchhhhh
Q 038622 550 --MVRGFLKIRKFQDALATFGDILDSRMPRKTFR 581 (587)
Q Consensus 550 --~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 581 (587)
++.++...+++++|+..|++.+...+.++.+.
T Consensus 83 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~ 116 (128)
T d1elra_ 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLK 116 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHH
Confidence 44555666688888888888877766665443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=2e-07 Score=73.82 Aligned_cols=133 Identities=10% Similarity=0.001 Sum_probs=92.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 038622 372 TYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALF 451 (587)
Q Consensus 372 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 451 (587)
.+...+..+...|++++|+..|++++.......... ..-......+ ...++..++.+|.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~--------------~~~~~~~~~~-------~~~~~~nla~~y~ 73 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS--------------NEEAQKAQAL-------RLASHLNLAMCHL 73 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCC--------------SHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccc--------------hHHHhhhchh-------HHHHHHHHHHHHH
Confidence 445556677777888888888877776411100000 0000011111 1235677889999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhH
Q 038622 452 RRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEET 529 (587)
Q Consensus 452 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 529 (587)
+.|++++|+..++++++.+ |.+...+..++.++...|+ +++|+..|+++++ +.| ++.+...+..+..+.+...+
T Consensus 74 k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~-~~~A~~~~~~al~--l~P~n~~~~~~l~~~~~~~~~~~~ 148 (170)
T d1p5qa1 74 KLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVND-FELARADFQKVLQ--LYPNNKAAKTQLAVCQQRIRRQLA 148 (170)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhh-HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999975 7788889999999999999 9999999999998 456 78887777777665554443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.73 E-value=1.7e-07 Score=72.75 Aligned_cols=67 Identities=12% Similarity=0.024 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc
Q 038622 477 TYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
++..++.++...|+ +++|+..+.++++. .| +..++..+|.++...|++++|+..|+++++.+|.+..
T Consensus 69 ~~~Nla~~~~~l~~-~~~Al~~~~~al~~--~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 136 (153)
T d2fbna1 69 CNLNLATCYNKNKD-YPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 136 (153)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHhhHHHHHHHhcc-cchhhhhhhccccc--cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 55678888999999 99999999999984 56 7899999999999999999999999999999998743
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=3.9e-08 Score=72.47 Aligned_cols=105 Identities=14% Similarity=0.112 Sum_probs=68.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCC-HHHHHHHHHH
Q 038622 409 GTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKR---TTEAMRLFREMMEKADPPD-ALTYKHVFRG 484 (587)
Q Consensus 409 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~ 484 (587)
..++..+...+++++|.+.|++++..++. +..++..++.++.+.++ +++|+.+|++++..+..|+ ...+..++.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 34566667777777777777777776443 56777777777766443 4457777777776532222 2256667777
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 038622 485 LCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYML 517 (587)
Q Consensus 485 ~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l 517 (587)
+...|+ +++|+++|+++++ +.| +..+...+
T Consensus 82 y~~~g~-~~~A~~~~~~aL~--~~P~~~~A~~l~ 112 (122)
T d1nzna_ 82 NYRLKE-YEKALKYVRGLLQ--TEPQNNQAKELE 112 (122)
T ss_dssp HHHTTC-HHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHhh-hHHHHHHHHHHHH--hCcCCHHHHHHH
Confidence 777777 7888888887777 456 45444433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.69 E-value=1.6e-07 Score=74.57 Aligned_cols=87 Identities=17% Similarity=0.136 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc-hhhhh
Q 038622 474 DALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR-ETSMV 551 (587)
Q Consensus 474 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~ 551 (587)
....+..++.++...|+ +++|+..+.++++ +.| ++.++..+|.+|...|++++|+..|+++++.+|.+.. ...+.
T Consensus 76 ~~~~~~nla~~~~~~~~-~~~Ai~~~~~al~--~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~ 152 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSD-WQGAVDSCLEALE--IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELL 152 (169)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcc-cchhhhhhhhhhh--hhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34456677888899999 9999999999998 456 7999999999999999999999999999999998743 44444
Q ss_pred hhHHHHHHHHHH
Q 038622 552 RGFLKIRKFQDA 563 (587)
Q Consensus 552 ~~~~~~~~~~~A 563 (587)
.+..+.....++
T Consensus 153 ~~~~~l~~~~~~ 164 (169)
T d1ihga1 153 KVKQKIKAQKDK 164 (169)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.65 E-value=7.7e-07 Score=70.29 Aligned_cols=115 Identities=9% Similarity=0.007 Sum_probs=76.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCC-----------CHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 038622 443 YNPVIQALFRRKRTTEAMRLFREMMEK---ADPP-----------DALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFL 508 (587)
Q Consensus 443 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~-----------~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~ 508 (587)
+...+..+.+.|++++|+..|.+++.. .... ....+..++.++...|+ +++|+..++++++. .
T Consensus 18 ~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~-~~~Ai~~~~~al~l--~ 94 (168)
T d1kt1a1 18 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLRE-YTKAVECCDKALGL--D 94 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhh-cccchhhhhhhhhc--c
Confidence 334455555555555555555555531 0011 12234556777888888 99999999999884 4
Q ss_pred C-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc-hhhhhhhHHHHHHH
Q 038622 509 P-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR-ETSMVRGFLKIRKF 560 (587)
Q Consensus 509 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 560 (587)
| +..++..++.+|...|++++|+..++++++.+|.+.. ...+..+....+..
T Consensus 95 p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~ 148 (168)
T d1kt1a1 95 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEH 148 (168)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Confidence 5 7888889999999999999999999999998887743 44444444444433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.64 E-value=6.7e-07 Score=70.63 Aligned_cols=98 Identities=8% Similarity=-0.041 Sum_probs=77.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 038622 441 QAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAE 519 (587)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 519 (587)
..+..++.+|...|++++|+..+++++..+ |.+...+...+.++...|+ +++|+..|+++++ +.| +..+...+..
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~-~~~A~~~~~~al~--l~P~n~~~~~~l~~ 140 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNE-FESAKGDFEKVLE--VNPQNKAARLQIFM 140 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHH--SCTTCHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 356678889999999999999999999975 7788889999999999999 9999999999998 456 6777777777
Q ss_pred HHHccCCHh-HHHHHHHHHHhcCC
Q 038622 520 GLVSLGKEE-TLVELIDMVMDKAK 542 (587)
Q Consensus 520 ~~~~~g~~~-~A~~~~~~~~~~~~ 542 (587)
+....+... ...+.+.++.+.-+
T Consensus 141 ~~~~~~~~~e~~kk~~~~~f~~~~ 164 (168)
T d1kt1a1 141 CQKKAKEHNERDRRTYANMFKKFA 164 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhh
Confidence 766655443 35555555554433
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.61 E-value=4.2e-08 Score=75.25 Aligned_cols=111 Identities=13% Similarity=0.005 Sum_probs=76.1
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhC----------CCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 038622 451 FRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNG----------GGPIGEAVDFVIEMLERGFLP-EFSSFYMLAE 519 (587)
Q Consensus 451 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 519 (587)
.+.+.+++|+..|+++++.+ |.+...+..++.++... +. +++|+..++++++ +.| ++.++..+|.
T Consensus 8 ~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~-~~~Ai~~~~kAl~--l~P~~~~a~~~lG~ 83 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQM-IQEAITKFEEALL--IDPKKDEAVWCIGN 83 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHH-HHHHHHHHHHHHH--hcchhhHHHhhHHH
Confidence 34455667777777776654 55666666666555432 33 6789999999998 456 7889999999
Q ss_pred HHHccCC-----------HhHHHHHHHHHHhcCCCCCchhhhhhhHHHHHHHHHHHHhcchhh
Q 038622 520 GLVSLGK-----------EETLVELIDMVMDKAKFSDRETSMVRGFLKIRKFQDALATFGDIL 571 (587)
Q Consensus 520 ~~~~~g~-----------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 571 (587)
+|...|+ +++|.+.|+++++.+|.++... ...+...+|.+.+.++.
T Consensus 84 ~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~------~~L~~~~ka~~~~~e~~ 140 (145)
T d1zu2a1 84 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYL------KSLEMTAKAPQLHAEAY 140 (145)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH------HHHHHHHTHHHHHHHHH
T ss_pred HHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHH------HHHHHHHHHHHHHHHHH
Confidence 9877653 6899999999999999875432 22344555555555544
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=1.4e-08 Score=96.65 Aligned_cols=228 Identities=10% Similarity=0.035 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038622 283 EALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNS-VTYNTLIDGLCKSRRVEDAAQLMDQM 361 (587)
Q Consensus 283 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~ 361 (587)
+|.+.|+++.... +....++..++.++...|++++| |++++..+ |+. ...+. ....-...+..+.+.++..
T Consensus 4 eA~q~~~qA~~l~-p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~--e~~Lw~~~y~~~ie~~r~~ 75 (497)
T d1ya0a1 4 QSAQYLRQAEVLK-ADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKV--EQDLWNHAFKNQITTLQGQ 75 (497)
T ss_dssp HHHHHHHHHHHHH-GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTH--HHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhH--HHHHHHHHHHHHHHHHHHh
Confidence 6888999987753 33445667778888888888776 66666542 221 11111 1111112245677777777
Q ss_pred HHcCCCCCHhhHHHH--HHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 038622 362 IMEGLKPDKFTYNSL--LTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLT 439 (587)
Q Consensus 362 ~~~~~~~~~~~~~~l--~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 439 (587)
.+....++....... .......+.++.++..+.......+ ++...+..++..+.+.|+.++|...+++.... . .
T Consensus 76 ~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~-~ 151 (497)
T d1ya0a1 76 AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDL-PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--I-C 151 (497)
T ss_dssp HSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHH--H-H
T ss_pred cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCh-hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--C-H
Confidence 654333333322221 1222334556666655555444322 25567778888889999999999888877652 2 2
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038622 440 PQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAE 519 (587)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 519 (587)
...+..++..+...|++++|+..|.++++.. |.+...++.++..+...|+ ..+|+..|.+++... +|-+.++.+|+.
T Consensus 152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~-~~~A~~~y~ral~~~-~~~~~a~~nL~~ 228 (497)
T d1ya0a1 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGD-HLTTIFYYCRSIAVK-FPFPAASTNLQK 228 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTC-HHHHHHHHHHHHSSS-BCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCC-HHHHHHHHHHHHhCC-CCCHHHHHHHHH
Confidence 3678889999999999999999999999974 7777889999999999999 999999999999743 457888889888
Q ss_pred HHHccC
Q 038622 520 GLVSLG 525 (587)
Q Consensus 520 ~~~~~g 525 (587)
++.+..
T Consensus 229 ~~~~~~ 234 (497)
T d1ya0a1 229 ALSKAL 234 (497)
T ss_dssp HHHHHT
T ss_pred HHHHhh
Confidence 876544
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=2.4e-08 Score=94.88 Aligned_cols=229 Identities=8% Similarity=-0.065 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHH
Q 038622 248 VAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVV-TYNTLIDGFCKLKRIEEAEEIFDEM 326 (587)
Q Consensus 248 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~ 326 (587)
+|.+.|+++.+.. +....++..++.++...+++++| |++++..+ |+.. ..+...... ...+..+.+.++..
T Consensus 4 eA~q~~~qA~~l~-p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e~~Lw--~~~y~~~ie~~r~~ 75 (497)
T d1ya0a1 4 QSAQYLRQAEVLK-ADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVEQDLW--NHAFKNQITTLQGQ 75 (497)
T ss_dssp HHHHHHHHHHHHH-GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHHHHHH--HHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHHHHHH--HHHHHHHHHHHHHh
Confidence 6889999988762 22356777788888888888776 77776543 3211 111111111 11245677777776
Q ss_pred HHcCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 038622 327 EIQGISRNSVTYNTLI--DGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPD 404 (587)
Q Consensus 327 ~~~~~~~~~~~~~~l~--~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 404 (587)
.+....++........ ......+.++.++..+.+..... .++...+..++..+...|+.+.|...+...... . .
T Consensus 76 ~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~-~ 151 (497)
T d1ya0a1 76 AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--I-C 151 (497)
T ss_dssp HSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHH--H-H
T ss_pred cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--C-H
Confidence 6543233332222222 22233455666666555554432 234556778888899999999999988877653 1 2
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038622 405 IVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRG 484 (587)
Q Consensus 405 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 484 (587)
..++..++..+...|++++|...|+++.+..+. +...|+.++..+...|+..+|+..|.+++... +|-...+..+...
T Consensus 152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~ 229 (497)
T d1ya0a1 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHH
Confidence 357888999999999999999999999997544 56899999999999999999999999999975 7788888888777
Q ss_pred HHhCCC
Q 038622 485 LCNGGG 490 (587)
Q Consensus 485 ~~~~~~ 490 (587)
+....+
T Consensus 230 ~~~~~~ 235 (497)
T d1ya0a1 230 LSKALE 235 (497)
T ss_dssp HHHHTT
T ss_pred HHHhhh
Confidence 654443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.51 E-value=1.1e-06 Score=68.07 Aligned_cols=127 Identities=6% Similarity=-0.053 Sum_probs=87.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 038622 372 TYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALF 451 (587)
Q Consensus 372 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 451 (587)
.+..-+..+...|++.+|+..|++++..-. ..... . +.... ..... .....+..++.+|.
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~--~~~~~-----------~-~~~~~--~~~~~----~~~~~~~Nla~~~~ 78 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFI--HTEEW-----------D-DQILL--DKKKN----IEISCNLNLATCYN 78 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTT--TCTTC-----------C-CHHHH--HHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCc--chhhh-----------h-hHHHH--Hhhhh----HHHHHHhhHHHHHH
Confidence 455566777888888888888888776411 11000 0 00000 00000 01236678889999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 038622 452 RRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLV 522 (587)
Q Consensus 452 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 522 (587)
+.|++++|++.+.++++.+ |.+...|..++.++...|+ +++|+..|+++++ +.| +..+...+..+..
T Consensus 79 ~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~-~~~A~~~~~~al~--l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 79 KNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGF-LEEAKENLYKAAS--LNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHH--HSTTCHHHHHHHHHHHH
T ss_pred Hhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCC-HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 9999999999999999875 7788889999999999999 9999999999998 457 6666666655544
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.49 E-value=8.9e-07 Score=70.08 Aligned_cols=87 Identities=10% Similarity=-0.018 Sum_probs=72.2
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 038622 440 PQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLA 518 (587)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 518 (587)
...+..++.++.+.|++++|+..+.++++.+ |.+...|..++.++...|+ +++|+..|+++++. .| +..+...+.
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~-~~~A~~~~~~al~l--~p~n~~~~~~l~ 152 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKE-YDQALADLKKAQEI--APEDKAIQAELL 152 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccC-HHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 4567788999999999999999999999975 7788899999999999999 99999999999994 56 677777777
Q ss_pred HHHHccCCHhHH
Q 038622 519 EGLVSLGKEETL 530 (587)
Q Consensus 519 ~~~~~~g~~~~A 530 (587)
.+..+.....++
T Consensus 153 ~~~~~l~~~~~~ 164 (169)
T d1ihga1 153 KVKQKIKAQKDK 164 (169)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 776655444443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.26 E-value=0.001 Score=57.64 Aligned_cols=137 Identities=12% Similarity=0.109 Sum_probs=82.5
Q ss_pred CCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHH
Q 038622 17 KPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVL 96 (587)
Q Consensus 17 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 96 (587)
.||...-..+++.|.+.|.++.|..+|..+. -|..++..+.+.++++.|.+++.+. .+..+|..+
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~ 75 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV 75 (336)
T ss_dssp CC----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHH
Confidence 4566666777888888999999988888765 3667777788888888887776544 256677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC
Q 038622 97 VHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLG 174 (587)
Q Consensus 97 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 174 (587)
...+........+ .+.......++.....++..|-..|.+++...+++..... -..+...++.++..|++.+
T Consensus 76 ~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 76 CFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence 7777776665443 2222222345555567788888888888888888877653 2345566777777777754
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.25 E-value=1.4e-06 Score=66.56 Aligned_cols=112 Identities=11% Similarity=-0.006 Sum_probs=65.2
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038622 417 KAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRR----------KRTTEAMRLFREMMEKADPPDALTYKHVFRGLC 486 (587)
Q Consensus 417 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (587)
+.+.+++|+..++.+.+..+. +..++..++.++... +.+++|+..|+++++.+ |.+...+..++.++.
T Consensus 9 r~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHHH
Confidence 344456666666666665433 445555555555432 34466777777777764 556666766666665
Q ss_pred hCCC----------CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 038622 487 NGGG----------PIGEAVDFVIEMLERGFLPE-FSSFYMLAEGLVSLGKEETLVELIDMVMD 539 (587)
Q Consensus 487 ~~~~----------~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 539 (587)
..|. .+++|.+.|+++++ +.|+ ..++..|+.+. .|.+.+.++.+
T Consensus 87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~~-------ka~~~~~e~~k 141 (145)
T d1zu2a1 87 SFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMTA-------KAPQLHAEAYK 141 (145)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH-------THHHHHHHHHH
T ss_pred HcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 4431 26788888888888 5674 44444444443 44445544443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.21 E-value=9.7e-07 Score=74.89 Aligned_cols=127 Identities=10% Similarity=-0.045 Sum_probs=91.0
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHH
Q 038622 415 LCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGE 494 (587)
Q Consensus 415 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 494 (587)
..+.|++++|+..+++.++..+. +...+..++..++..|++++|...|+.+.+.. |.+...+..+...+...+. .++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~-~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQA-RKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccc-cHH
Confidence 45679999999999999997555 67899999999999999999999999999864 4445555555555444333 333
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 495 AVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 495 A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
+.....+....+ .| +...+...+..+...|++++|...++++.+..|...
T Consensus 83 a~~~~~~~~~~~-~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~ 133 (264)
T d1zbpa1 83 FAQGAATAKVLG-ENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 133 (264)
T ss_dssp HTTSCCCEECCC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHhhhhhccc-CchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 332222211111 23 344455677888899999999999999999998764
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.15 E-value=0.0019 Score=55.98 Aligned_cols=145 Identities=13% Similarity=0.092 Sum_probs=94.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 038622 53 PDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLV 132 (587)
Q Consensus 53 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 132 (587)
||..-...++..|.+.|.++.|..+|..+.. +..++..+.+.++++.|.+.+.+. .+..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHH
Confidence 4555556677888899999999999976542 557888899999999998887654 2577899999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHH
Q 038622 133 NGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVE 212 (587)
Q Consensus 133 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 212 (587)
..+.+.....-+. +.......++.....++..|...|.++....+++...... +.+...++.++..|++.+ .+
T Consensus 77 ~~l~~~~e~~la~-----i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~-~~ 149 (336)
T d1b89a_ 77 FACVDGKEFRLAQ-----MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQ 149 (336)
T ss_dssp HHHHHTTCHHHHH-----HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-HH
T ss_pred HHHHhCcHHHHHH-----HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC-hH
Confidence 9888877665432 2222233455566778899999999999999999887653 456777888888888764 34
Q ss_pred HHHHHHH
Q 038622 213 EATELAR 219 (587)
Q Consensus 213 ~a~~~~~ 219 (587)
+..+.++
T Consensus 150 kl~e~l~ 156 (336)
T d1b89a_ 150 KMREHLE 156 (336)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.12 E-value=1e-05 Score=62.62 Aligned_cols=102 Identities=23% Similarity=0.211 Sum_probs=75.8
Q ss_pred hHHHH--HHHHHhcCCHHHHHHHHHHHHhcC--CCC---------CHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---
Q 038622 442 AYNPV--IQALFRRKRTTEAMRLFREMMEKA--DPP---------DALTYKHVFRGLCNGGGPIGEAVDFVIEMLER--- 505 (587)
Q Consensus 442 ~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~--~~~---------~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~--- 505 (587)
++..+ +..+...|++++|+..|+++++.. .+. ....|..++.++...|+ +++|...+.++++.
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~-~~~A~~~~~~al~~~~~ 87 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS-FDEALHSADKALHYFNR 87 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCc-cchhhHhhhhhhhcccc
Confidence 44444 556677788999999888888741 111 13567788888999999 99999999998852
Q ss_pred --CCCCC-----HHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 506 --GFLPE-----FSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 506 --~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
...++ ..++..++.+|...|++++|+..|+++++..|..
T Consensus 88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 11222 2356789999999999999999999999876644
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.11 E-value=8e-05 Score=58.63 Aligned_cols=127 Identities=9% Similarity=-0.003 Sum_probs=86.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 038622 373 YNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFR 452 (587)
Q Consensus 373 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 452 (587)
....+......|++++|...|...+... +.... ......+-+...-..+.. .....+..++..+..
T Consensus 14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~l--------~~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~ 79 (179)
T d2ff4a2 14 EKTAGVHAAAAGRFEQASRHLSAALREW--RGPVL--------DDLRDFQFVEPFATALVE----DKVLAHTAKAEAEIA 79 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC--CSSTT--------GGGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccccc--------ccCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 3444566788899999999999888752 11110 000011111111111211 123567788899999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----HcCCCCCHHHHH
Q 038622 453 RKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEML-----ERGFLPEFSSFY 515 (587)
Q Consensus 453 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~-----~~~~~p~~~~~~ 515 (587)
.|++++|+..+++++..+ |-+...|..++.++...|+ .++|++.|+++. +.|+.|++.+..
T Consensus 80 ~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr-~~eAl~~y~~~~~~L~~eLG~~P~~~l~~ 145 (179)
T d2ff4a2 80 CGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDR-QSDALGAYRRVKTTLADDLGIDPGPTLRA 145 (179)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred CCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHhCCCcCHHHHH
Confidence 999999999999999875 7788889999999999999 999999999874 357888776543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=9.8e-06 Score=56.31 Aligned_cols=69 Identities=7% Similarity=-0.056 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----CCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 476 LTYKHVFRGLCNGGGPIGEAVDFVIEMLERG-----FLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 476 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~-----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
.....++..+.+.|+ +++|+..++++++.. ..+ ...++..|+.++.+.|++++|+..++++++.+|..+
T Consensus 6 ddc~~lG~~~~~~g~-y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~ 80 (95)
T d1tjca_ 6 EDSFELGKVAYTEAD-YYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ 80 (95)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCH
Confidence 334466777778887 888888888877531 011 256778888888888888888888888888888764
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.05 E-value=1.4e-05 Score=55.55 Aligned_cols=78 Identities=9% Similarity=0.052 Sum_probs=52.9
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CCC-CHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CH
Q 038622 439 TPQAYNPVIQALFRRKRTTEAMRLFREMMEKA-----DPP-DALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EF 511 (587)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~ 511 (587)
+...+..++..+...|++++|+..|+++++.. ..+ ...++..++.++.+.|+ +++|+..++++++ +.| ++
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~-~~~A~~~y~~aL~--l~P~~~ 80 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGD-LDKALLLTKKLLE--LDPEHQ 80 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHH--HCTTCH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCC-hHHHHHHHHHHHH--hCcCCH
Confidence 44556677777778888888888887777631 011 14566777777888888 8888888888887 456 56
Q ss_pred HHHHHHHH
Q 038622 512 SSFYMLAE 519 (587)
Q Consensus 512 ~~~~~l~~ 519 (587)
.++.++..
T Consensus 81 ~a~~Nl~~ 88 (95)
T d1tjca_ 81 RANGNLKY 88 (95)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666544
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.00 E-value=3.5e-06 Score=71.37 Aligned_cols=123 Identities=13% Similarity=-0.049 Sum_probs=62.8
Q ss_pred HHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 038622 30 LCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDA 109 (587)
Q Consensus 30 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 109 (587)
..+.|++++|+..+++.++.. |.|...+..++..++..|++++|...++.+.+.+ |.....+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHH
Confidence 345666666666666666665 5566666666666666666666666666666654 33344444444443333332222
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 038622 110 LSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQE 154 (587)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (587)
..........+.+++...+...+..+...|+.++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 221111111111112222333444555566666666666665553
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.00 E-value=5.5e-05 Score=59.57 Aligned_cols=61 Identities=8% Similarity=-0.044 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 038622 476 LTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMD 539 (587)
Q Consensus 476 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 539 (587)
..+..++..+...|+ +++|+..++++++ +.| +..++..++.+|...|++++|++.|+++.+
T Consensus 68 ~a~~~la~~~~~~g~-~~~Al~~~~~al~--~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 68 LAHTAKAEAEIACGR-ASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC-chHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 346677888889999 9999999999998 457 889999999999999999999999998743
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.96 E-value=4.2e-06 Score=64.98 Aligned_cols=93 Identities=16% Similarity=0.104 Sum_probs=74.1
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCC-CCC----------HHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCC-----CC
Q 038622 482 FRGLCNGGGPIGEAVDFVIEMLERGF-LPE----------FSSFYMLAEGLVSLGKEETLVELIDMVMDKAKF-----SD 545 (587)
Q Consensus 482 ~~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~ 545 (587)
+......|+ +++|+..|+++++..- .|+ ..++..++.+|.+.|++++|...++++++..+. .+
T Consensus 16 g~~~~~~g~-y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~ 94 (156)
T d2hr2a1 16 AQRQLVAGE-YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD 94 (156)
T ss_dssp HHHHHHHTC-HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred HHHHHHcCC-HHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccc
Confidence 556778899 9999999999996310 111 356788999999999999999999999875432 11
Q ss_pred -------chhhhhhhHHHHHHHHHHHHhcchhhhccC
Q 038622 546 -------RETSMVRGFLKIRKFQDALATFGDILDSRM 575 (587)
Q Consensus 546 -------~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 575 (587)
.++.++.+|...|++++|+..|+++++..+
T Consensus 95 ~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~ 131 (156)
T d2hr2a1 95 EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 131 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 246678899999999999999999988754
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.83 E-value=0.011 Score=54.18 Aligned_cols=416 Identities=13% Similarity=0.035 Sum_probs=210.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 038622 60 TLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVG 139 (587)
Q Consensus 60 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 139 (587)
..+....+.|+...+.++...+.+ .|.-+.+-..-+.........+++..++++-... |.....-...+..+.+.+
T Consensus 11 ~~a~~a~~~~~~~~~~~~~~~L~d--ypL~pYl~~~~l~~~~~~~~~~~i~~Fl~~~p~~--P~~~~lr~~~l~~L~~~~ 86 (450)
T d1qsaa1 11 AQIKQAWDNRQMDVVEQMMPGLKD--YPLYPYLEYRQITDDLMNQPAVTVTNFVRANPTL--PPARTLQSRFVNELARRE 86 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHSGGGTT--STTHHHHHHHHHHHTGGGCCHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHhhhcC--CCCHHHHHHHHHHhccccCCHHHHHHHHHHCCCC--hhHHHHHHHHHHHHHhcc
Confidence 445556678888888777776632 2322222111111112233444444433331110 111122334455666777
Q ss_pred ChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHH
Q 038622 140 HVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELAR 219 (587)
Q Consensus 140 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 219 (587)
++...+..+. ..+.+...-...+.+....|+.+.|...+..+-..+ ...+..+.. ++.
T Consensus 87 ~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~-~~~p~~c~~----------------l~~ 144 (450)
T d1qsaa1 87 DWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDK----------------LFS 144 (450)
T ss_dssp CHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHH----------------HHH
T ss_pred CHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCchHHHH----------------HHH
Confidence 7665444331 123344444556677777888888887777766554 222333333 333
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC
Q 038622 220 VLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPD-EFTYNMLIDSLCSRGMLEEALKLLKEMESSGCAR 298 (587)
Q Consensus 220 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 298 (587)
.+...|. .+...+..-+......|++..|..+...+ +++ ............. ...+.... ... +.
T Consensus 145 ~~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l-----~~~~~~~~~a~~~l~~~---p~~~~~~~---~~~--~~ 210 (450)
T d1qsaa1 145 VWRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQM-----PADYQTIASAIISLANN---PNTVLTFA---RTT--GA 210 (450)
T ss_dssp HHHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHHC---GGGHHHHH---HHS--CC
T ss_pred HHHhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhC-----ChhHHHHHHHHHHHHhC---hHhHHHHH---hcC--CC
Confidence 3333322 23444444455556677888777766532 222 2222333333222 22222221 111 12
Q ss_pred CHHHHHHHHHHHH--ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHHHHcCCCCCHhh
Q 038622 299 NVVTYNTLIDGFC--KLKRIEEAEEIFDEMEIQGISRNSVTYNTLID----GLCKSRRVEDAAQLMDQMIMEGLKPDKFT 372 (587)
Q Consensus 299 ~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 372 (587)
+......+..++. ...+.+.+...+....... +.+...+..+.. .....+..+.+...+......+ .+...
T Consensus 211 ~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~ 287 (450)
T d1qsaa1 211 TDFTRQMAAVAFASVARQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSL 287 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHH
T ss_pred ChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHH
Confidence 2222222222222 2357788888887776543 223322222222 2234456677777777766543 34444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 038622 373 YNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFR 452 (587)
Q Consensus 373 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 452 (587)
....+......+++..+...+..+... ..........+++++...|+.+.|..+|..+.. .++ .|..++.. +
T Consensus 288 ~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~--fYG~LAa~--~ 359 (450)
T d1qsaa1 288 IERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG--FYPMVAAQ--R 359 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS--HHHHHHHH--H
T ss_pred HHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC--hHHHHHHH--H
Confidence 444555566678888888887766432 111334456678888888888888888888764 222 22222222 2
Q ss_pred cCCHHHHHHHHHHHHhcCC--CCC-H---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 038622 453 RKRTTEAMRLFREMMEKAD--PPD-A---LTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGK 526 (587)
Q Consensus 453 ~g~~~~A~~~~~~~~~~~~--~~~-~---~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 526 (587)
.|..-. +..... .+. . ..-...+..+...|. ...|...+..+.+. .++.-...++....+.|.
T Consensus 360 Lg~~~~-------~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~-~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~ 428 (450)
T d1qsaa1 360 IGEEYE-------LKIDKAPQNVDSALTQGPEMARVRELMYWNL-DNTARSEWANLVKS---KSKTEQAQLARYAFNNQW 428 (450)
T ss_dssp TTCCCC-------CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTC-HHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTC
T ss_pred cCCCCC-------CCcCCCCccHHHhhhcChHHHHHHHHHHcCC-chHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCC
Confidence 221100 000000 000 0 001123445677788 88888888877752 345566677888888888
Q ss_pred HhHHHHHHHHH
Q 038622 527 EETLVELIDMV 537 (587)
Q Consensus 527 ~~~A~~~~~~~ 537 (587)
++.|+....++
T Consensus 429 ~~~aI~a~~~~ 439 (450)
T d1qsaa1 429 WDLSVQATIAG 439 (450)
T ss_dssp HHHHHHHHHHT
T ss_pred hhHHHHHHHHH
Confidence 88888777664
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.60 E-value=0.0013 Score=48.58 Aligned_cols=82 Identities=7% Similarity=0.034 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cC
Q 038622 454 KRTTEAMRLFREMMEKADPPDALTYKHVFRGLCN----GGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVS----LG 525 (587)
Q Consensus 454 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g 525 (587)
.+.++|+++++++.+.| ++.....+...+.. ..+ .++|.++|+++.+.| ++.+...|+.+|.. ..
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d-~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~ 109 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKD-LRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVK 109 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCC-HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchh-hHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCC
Confidence 45566666666666543 23333334433332 222 566666666666533 45555566666654 34
Q ss_pred CHhHHHHHHHHHHhcCC
Q 038622 526 KEETLVELIDMVMDKAK 542 (587)
Q Consensus 526 ~~~~A~~~~~~~~~~~~ 542 (587)
+.++|.++++++.+.+.
T Consensus 110 d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 110 NEKQAVKTFEKACRLGS 126 (133)
T ss_dssp CHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHCCC
Confidence 56666666666666553
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.31 E-value=0.0053 Score=45.14 Aligned_cols=15 Identities=7% Similarity=0.122 Sum_probs=6.8
Q ss_pred ChHHHHHHHHHHHHc
Q 038622 245 NFDVAMELFQEMKTK 259 (587)
Q Consensus 245 ~~~~a~~~~~~~~~~ 259 (587)
+.++|.++|++..+.
T Consensus 74 d~~~A~~~~~~aa~~ 88 (133)
T d1klxa_ 74 DLRKAAQYYSKACGL 88 (133)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHhhhhcc
Confidence 344444444444443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.23 E-value=0.073 Score=48.55 Aligned_cols=416 Identities=11% Similarity=0.040 Sum_probs=235.1
Q ss_pred HHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 038622 25 ILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLI--EEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCK 102 (587)
Q Consensus 25 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 102 (587)
..+....+.|+...+.++...+... | ...|...-.... .....++...++++-.. .|............+.+
T Consensus 11 ~~a~~a~~~~~~~~~~~~~~~L~dy--p--L~pYl~~~~l~~~~~~~~~~~i~~Fl~~~p~--~P~~~~lr~~~l~~L~~ 84 (450)
T d1qsaa1 11 AQIKQAWDNRQMDVVEQMMPGLKDY--P--LYPYLEYRQITDDLMNQPAVTVTNFVRANPT--LPPARTLQSRFVNELAR 84 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHSGGGTTS--T--THHHHHHHHHHHTGGGCCHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhhhcCC--C--CHHHHHHHHHHhccccCCHHHHHHHHHHCCC--ChhHHHHHHHHHHHHHh
Confidence 4456678899999999888887532 2 233443333322 33445554444433211 12233334455667788
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHH
Q 038622 103 EGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEI 182 (587)
Q Consensus 103 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 182 (587)
.++++..+..+. ..+.+...-...+.+....|+.+.|.+.+..+-..|.. .+... ..+
T Consensus 85 ~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p~~c----------------~~l 142 (450)
T d1qsaa1 85 REDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNAC----------------DKL 142 (450)
T ss_dssp TTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHH----------------HHH
T ss_pred ccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CchHH----------------HHH
Confidence 888876554332 22455655567778888899999998888777655322 22222 334
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 038622 183 LNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQ 262 (587)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 262 (587)
+......+ ..+...+-.-+......|+...|..++..+.. .........+.... +...+..... .. +
T Consensus 143 ~~~~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~----~~~~~~~a~~~l~~---~p~~~~~~~~---~~--~ 209 (450)
T d1qsaa1 143 FSVWRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPA----DYQTIASAIISLAN---NPNTVLTFAR---TT--G 209 (450)
T ss_dssp HHHHHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCG----GGHHHHHHHHHHHH---CGGGHHHHHH---HS--C
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCCh----hHHHHHHHHHHHHh---ChHhHHHHHh---cC--C
Confidence 44444433 33444444555666677888888877654321 12222233333222 2333333221 12 2
Q ss_pred CCHHhHHHHHHHH--HccCChHHHHHHHHHHHHCCCCCCHHHHHH----HHHHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 038622 263 PDEFTYNMLIDSL--CSRGMLEEALKLLKEMESSGCARNVVTYNT----LIDGFCKLKRIEEAEEIFDEMEIQGISRNSV 336 (587)
Q Consensus 263 ~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 336 (587)
++......+...+ ....+.+.+...+....... ..+...... ++......+..+.+...+....... .+..
T Consensus 210 ~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~ 286 (450)
T d1qsaa1 210 ATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTS 286 (450)
T ss_dssp CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHH
T ss_pred CChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchH
Confidence 2332222222222 23357888888888876643 223322222 2233344567788888887776553 3444
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHH
Q 038622 337 TYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLC 416 (587)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 416 (587)
...-.+......+++..+...+..+... .........-++.++...|+.+.|...|..+... ++ -|..|+..
T Consensus 287 ~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~--fYG~LAa~-- 358 (450)
T d1qsaa1 287 LIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVAAQ-- 358 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHHHH--
T ss_pred HHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC--hHHHHHHH--
Confidence 4444555566789999999998877542 2223445567788999999999999999998752 22 33333322
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCh-H-----hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Q 038622 417 KAGRVEVASKLLRSIQMKGIVLTP-Q-----AYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGG 490 (587)
Q Consensus 417 ~~~~~~~a~~~~~~~~~~~~~~~~-~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 490 (587)
+.|..-. +....+..+. . .-..-+..+...|....|.+.+..+... .+......++....+.|.
T Consensus 359 ~Lg~~~~-------~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~ 428 (450)
T d1qsaa1 359 RIGEEYE-------LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQW 428 (450)
T ss_dssp HTTCCCC-------CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTC
T ss_pred HcCCCCC-------CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCC
Confidence 2222100 0000000000 0 1123456677899999999999988764 345566677777889999
Q ss_pred CHHHHHHHHHHHH
Q 038622 491 PIGEAVDFVIEML 503 (587)
Q Consensus 491 ~~~~A~~~~~~~~ 503 (587)
++.|+....++.
T Consensus 429 -~~~aI~a~~~~~ 440 (450)
T d1qsaa1 429 -WDLSVQATIAGK 440 (450)
T ss_dssp -HHHHHHHHHHTT
T ss_pred -hhHHHHHHHHHH
Confidence 999998777753
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.03 E-value=0.0032 Score=44.45 Aligned_cols=73 Identities=12% Similarity=0.187 Sum_probs=56.7
Q ss_pred CCCHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCCC-C-HHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc
Q 038622 472 PPDALTYKHVFRGLCNGGG--PIGEAVDFVIEMLERGFLP-E-FSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~--~~~~A~~~~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
.+...+-..+++++.+... +.++|+.+++++.+. .| + .+.++.|+-+|++.|++++|++.++++++.+|.+..
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~--~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~q 108 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 108 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHH
Confidence 4556666677777775543 266899999998874 35 4 478889999999999999999999999999998743
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.35 E-value=0.024 Score=39.92 Aligned_cols=65 Identities=15% Similarity=0.122 Sum_probs=28.6
Q ss_pred cchHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038622 405 IVTYGTLIGGLCKAG---RVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEK 469 (587)
Q Consensus 405 ~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (587)
..+-...+.+++++. +.++++.+++.+.+.++.-....+..++.+|.+.|++++|.++++.+++.
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 334444444444332 23344555555444321111134444555555555555555555555543
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.61 E-value=0.42 Score=33.08 Aligned_cols=140 Identities=16% Similarity=0.088 Sum_probs=77.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHH
Q 038622 381 CRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAM 460 (587)
Q Consensus 381 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 460 (587)
.-.|..++..+++.+.... .+..-|+.++--....-+-+...++++.+-+. +..+ ..++.....
T Consensus 13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~-FDls------------~C~Nlk~vv 76 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-FDLD------------KCQNLKSVV 76 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-SCGG------------GCSCTHHHH
T ss_pred HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh-cCch------------hhhcHHHHH
Confidence 3456666666666666553 12333444433334444555555555544432 1111 223333333
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhc
Q 038622 461 RLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDK 540 (587)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 540 (587)
..+-.+ ..+.......+..+..+|+ -+.-.++++.+++.+ .|+++.+..++.+|.+.|...++.++++++.+.
T Consensus 77 ~C~~~~-----n~~se~vdlALd~lv~~~k-kd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 77 ECGVIN-----NTLNEHVNKALDILVIQGK-RDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp HHHHHT-----TCCCHHHHHHHHHHHHTTC-HHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 333322 2233334445556667777 666677777766644 677888888888888888888888888888776
Q ss_pred CCC
Q 038622 541 AKF 543 (587)
Q Consensus 541 ~~~ 543 (587)
+..
T Consensus 150 G~K 152 (161)
T d1wy6a1 150 GEK 152 (161)
T ss_dssp TCH
T ss_pred hHH
Confidence 643
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=92.72 E-value=1 Score=31.20 Aligned_cols=58 Identities=19% Similarity=0.186 Sum_probs=25.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038622 412 IGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKA 470 (587)
Q Consensus 412 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 470 (587)
+..+..+|+-+.-.++++.+.+. -++++.....++.+|.+.|+..++-+++.++-+.|
T Consensus 93 Ld~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 93 LDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 33444444444444444443332 23344444444444444444444444444444443
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.95 E-value=1.3 Score=28.94 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038622 353 DAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTS 398 (587)
Q Consensus 353 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 398 (587)
+..+-++.+....+.|++......+.+|.+.+|+..|+++++.+..
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~ 69 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 69 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4445555555555666666666666666666666666666665554
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.13 E-value=2.7 Score=27.42 Aligned_cols=50 Identities=10% Similarity=0.102 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038622 385 DIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMK 434 (587)
Q Consensus 385 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 434 (587)
|.-+..+-++.+...++.|++.+....+++|.+.+++..|..+++.+..+
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K 70 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 70 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33445555555555566666666666667777777777777776666554
|
| >d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy-chain linker domain domain: Clathrin heavy-chain linker domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.56 E-value=4 Score=29.27 Aligned_cols=31 Identities=26% Similarity=0.404 Sum_probs=17.0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 038622 49 YGLAPDERTFTTLMQGLIEEGNLDGALRIRE 79 (587)
Q Consensus 49 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 79 (587)
.|++-....|..-...+...|+|.+|-.+.-
T Consensus 25 ~~LpGAd~l~~~~F~~lf~~g~y~eAA~~aA 55 (157)
T d1bpoa1 25 NNLAGAEELFARKFNALFAQGNYSEAAKVAA 55 (157)
T ss_dssp TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444445555555555666666666655543
|
| >d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy-chain linker domain domain: Clathrin heavy-chain linker domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.65 E-value=4.8 Score=28.90 Aligned_cols=133 Identities=16% Similarity=0.138 Sum_probs=92.3
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 038622 9 ADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLV 88 (587)
Q Consensus 9 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 88 (587)
.-..+.|++-....|..-.+.+...|++.+|.++-...++ |+-.++.+...+-.+-..-|+..-.+.+|..+.+.+ ..
T Consensus 20 ~lA~r~~LpGAd~l~~~~F~~lf~~g~y~eAA~~aA~sP~-giLRt~~Ti~rFk~~~~~pGq~spLL~YF~~Ll~~~-~L 97 (157)
T d1bpoa1 20 RMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QL 97 (157)
T ss_dssp HHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CC
T ss_pred HHHHhcCCCChHHHHHHHHHHHHHcCCHHHHHHHHHhCCc-ccccCHHHHHHHHcCCCCCCCCCHHHHHHHHHHhcC-CC
Confidence 3445678888888899999999999999999999887765 335677777766655556788888889999988887 55
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 038622 89 TNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMM 151 (587)
Q Consensus 89 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 151 (587)
+..--..+++.....|+.+-...++.+ ..+..+.. ++. +.+..+..-|..+|.++
T Consensus 98 N~~ESlEl~r~vL~q~r~~lve~Wl~e---~KL~~SEe----LGD-lv~~~d~~lAl~IY~ka 152 (157)
T d1bpoa1 98 NKYESLELCRPVLQQGRKQLLEKWLKE---DKLECSEE----LGD-LVKSVDPTLALSVYLRA 152 (157)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHH---TCSCCCHH----HHH-HHHHHCSHHHHHHHHHH
T ss_pred chHHhHHHHHHHHhcCcHHHHHHHHHc---CCccCcHH----HHH-HHHHcCHHHHHHHHHHc
Confidence 666566677878888887766665433 22333332 233 22333556677777654
|