Citrus Sinensis ID: 038630

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-----
MKAYHLNLFLILSLSISCIAESDISIGISSSIQRRILHQPLFPASSPPPGAEPPPSPPPPPPSPESPDQPFFPEDPNGQSQDQNQPPPATTPATPSSSSNGSIPIPAATQPAKPAKKVAIAISVGIVTLGMLSALAFFLYRHRVKHPGESQKLVGANSQGIQDEPRVPPSSFLYIGTVEPSRTSVSEAAANGSPYHKLDSVKRSDRYRPSPELQPLPQLTRPPSQNENSPAAMSSSDEESHDTAFYTPQCSSISNDEYCTPVVASSRSVHVNNNGTVNSVGHPNNSSVPHSKRTSPKSRLAASSPEMKNVIIPSIKQQQPPLPPAPPSQGMAERGTEQPRAEDSSRANPYSPKRPKFSSPPPPPPNMELLRSLNSNSSSQTTKIPVPPPPPPPLSIPRKILPKQQSLSSPNCPSGCGISKSPVEEVSKSTSTSEKTEGDGTDGAKPKLKALHWDKVRATSDRATVWDQLKSSSFQLNEDMMESLFGCNSVNSVPKEPTTRKSVLPPVELENRVLDPKKSQNIAILLRALNVTRDEVSEALLDGNPESLGAELLETLVKMAPTKEEEIKLREYKGDILKLGSAERFLKAVLDIPFAFKRVEAMLYRANFDAEVKYLRKSYQTLEAASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKAFKLDTLLKLVDIKGTDGKTTLLHFVVQEIIRAEGAGTKSTEVNVESKNSMREDEFKKQGLEVVSGLSRDLSNVKKAAGMDSDVLSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNAAKEEAHPFRIFMIVRDFLAILDHVCKEVGKMQERTMVGSARSFRISATASLPVLNRYNVRQDTSSDEDSSSP
ccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccEEEEccccHHHHHHHHHHccccHHHHHHHHHccccccccHHHHHHHHHccccHHHHHHHHHcccccccccHHHHHHHHHHccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHccccccccHHHHHcHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccc
ccHHHHEEEEEEEEEHcccccHHcEEEcccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHcccccccccccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHEEccccccccHHHHcccccccccHHHHHHHHcccccccccccccccccccccccccEEEEcHHHHHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHcccHHHHHHHHHHcccHHHccHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccccccccEEEEEHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHccccEEcccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHccccccccccc
MKAYHLNLFLILSLSISCiaesdisigisSSIQRrilhqplfpasspppgaepppsppppppspespdqpffpedpngqsqdqnqpppattpatpssssngsipipaatqpakpaKKVAIAISVGIVTLGMLSALAFFLYRHrvkhpgesqklvgansqgiqdeprvppssflyigtvepsrtsvseaaangspyhkldsvkrsdryrpspelqplpqltrppsqnenspaamsssdeeshdtafytpqcssisndeyctpvvassrsvhvnnngtvnsvghpnnssvphskrtspksrlaasspemknviipsikqqqpplppappsqgmaergteqpraedssranpyspkrpkfssppppppnmellrslnsnsssqttkipvppppppplsiprkilpkqqslsspncpsgcgiskspveevskststsektegdgtdgakpklkalhwdkvratsdratVWDQLKSSSFQLNEDMMESLfgcnsvnsvpkepttrksvlppvelenrvldpkksQNIAILLRALNVTRDEVSEAlldgnpesLGAELLETLVKMAPTKEEEIKLREYKGDILKLGSAERFLKAVLDIPFAFKRVEAMLYRANFDAEVKYLRKSYQTLEAASEELKNSRLFLKLLEAVLKTgnrmnvgtnrgdakafKLDTLLKLVdikgtdgkttLLHFVVQEIIRaegagtkstEVNVesknsmredefkKQGLEVVSGLSRDLSNvkkaagmdsdVLSSYVMKLEMGLEKVRLVLQYekpdmqgkfFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFhgnaakeeahpfRIFMIVRDFLAILDHVCKEVGKMQERTMVGSARSFRisataslpvlnrynvrqdtssdedsssp
MKAYHLNLFLILSLSISCIAESDISIGISSSIQRRILHQPLFPASSPPPGAEPPPSPPPPPPSPESPDQPFFPEDPNGQSQDQNQPPPATTPATPSSSSNGSIPIPAATQPAKPAKKVAIAISVGIVTLGMLSALAFFLYRHRVKHPGESQKLVgansqgiqdeprvpPSSFLYIGTVEPSRTSVseaaangspyhkldsvkrsdryrpspelqplpqltrppsqNENSPAAMSSSDEESHDTAFYTPQCSSISNDEYCTPVVASSRSVHVNNNGtvnsvghpnnssvphskrtspksrlaassPEMKNVIIPsikqqqpplPPAPPSQGMAERGTeqpraedssranpyspkrpkfssppppPPNMELLRSLNSNSSSQTTKIPVPPPPPPPLSIPRKILPKQQSLSSPNCPSGCGISKSPVEEVSkststsektegdgtdgakpklkalhwdkvratsdratvwdQLKSSSFQLNEDMMESLFGCNsvnsvpkepttrksvlppvelenrvldpkksqnIAILLRALNVTRDEVSEALldgnpeslgAELLETLVKMAPTKEEEIKLREYKGDILKLGSAERFLKAVLDIPFAFKRVEAMLYRANFDAEVKYLRKSYQTLEAASEELKNSRLFLKLLEAVLktgnrmnvgtnrgdakafklDTLLKLVDikgtdgkttLLHFVVQEIiraegagtkstevnvesknsmredefkkqGLEVVsglsrdlsnvkkaagmdsdVLSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNAAKEEAHPFRIFMIVRDFLAILDHVCKEVGKMQertmvgsarsfrisataslpvlnrynvrqdtssdedsssp
MKAYHlnlflilslsisciaesdisigisssiQRRILHQPLfpasspppgaepppsppppppspespdqpffpedpNGQSQDQNQpppattpatpssssngsipipaatqpakpakkvaiaiSVGIVTLGMLSALAFFLYRHRVKHPGESQKLVGANSQGIQDEPRVPPSSFLYIGTVEPSRTSVSEAAANGSPYHKLDSVKRSDRYRPSPELQPLPQLTRPPSQNENSPAAMSSSDEESHDTAFYTPQCSSISNDEYCTPVVASSRSVHVNNNGTVNSVGHPNNSSVPHSKRTSPKSRLAASSPEMKNVIIPSIKqqqpplppappsqGMAERGTEQPRAEDSSRANpyspkrpkfssppppppNMEllrslnsnsssQTTkipvppppppplsiprkilpkQQSLSSPNCPSGCGIskspveevskststsekteGDGTDGAKPKLKALHWDKVRATSDRATVWDQLKSSSFQLNEDMMESLFGCNSVNSVPKEPTTRKSVLPPVELENRVLDPKKSQNIAILLRALNVTRDEVSEALLDGNPESLGAELLETLVKMAPTKEEEIKLREYKGDILKLGSAERFLKAVLDIPFAFKRVEAMLYRANFDAEVKYLRKSYQTLEAASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKAFKLDTLLKLVDIKGTDGKTTLLHFVVQEIIRAEGAGTKSTEVNVESKNSMREDEFKKQGLEVVSGLSRDLSNVKKAAGMDSDVLSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLkeaeeeiarikaderMALSLVKEVTEYFHGNAAKEEAHPFRIFMIVRDFLAILDHVCKEVGKMQERTMVGSARSFRISATASLPVLNRYNVRQDTSSDEDSSSP
***YHLNLFLILSLSISCIAESDISIGISSSIQRRILH******************************************************************************KVAIAISVGIVTLGMLSALAFFLYRHRVK***************************LYI********************************************************************************DEYCTPVV*******************************************************************************************************************************************************************************************LHWDKVRAT*DRATVWDQ****************************************************NIAILLRALNVTRDEVSEALL******LGAELLETLVKMAP***EEIKLREYKGDILKLGSAERFLKAVLDIPFAFKRVEAMLYRANFDAEVKYLRKSYQTLEAASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKAFKLDTLLKLVDIKGTDGKTTLLHFVVQEIIRA*************************************************DVLSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNAAKEEAHPFRIFMIVRDFLAILDHVCKEVGKMQERTMVGSARSFRISATASLPVLNR****************
****HLNLFLILSLSISCIAESDISIGISSSIQRRILHQPLF******************************************************************************AISVGIVTLGMLSALAFFLYRH********************************************************************************************************************************************************************************************************************************************************************************************************************LHWDKVRATSDRATVWDQLKSSSFQLNEDMMESL*****************************LDPKKSQNIAILLRALNVTRDEVSEALLDGNPESLGAELLETLVKMAPTKEEEIKLREYKGDILKLGSAERFLKAVLDIPFAFKRVEAMLYRANFDAEVKYLRKSYQTLEAASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKAFKLDTLLKLVDIKGTDGKTTLLHFVVQEIIRAEGAGT***************DEFKKQGLEVVSGLSRDLSNVKKAAGMDSDVLSSYVMKLEMGLEKV*****************SMKMFLKEAEEEIA***A**RMALSLVKEVTEYFHGNAAKEEAHPFRIFMIVRDFLAILDHVCK**********************************************
MKAYHLNLFLILSLSISCIAESDISIGISSSIQRRILHQPLFPAS**********************DQPFFPED**************************SIPIPAA********KVAIAISVGIVTLGMLSALAFFLYRHRVKHPGESQKLVGANSQGIQDEPRVPPSSFLYIGTVEPSRTSVSEAAANGSPYHKLDSVKRSDRYRPSPELQPLPQL************************AFYTPQCSSISNDEYCTPVVASSRSVHVNNNGTVNSVGH**********************PEMKNVIIPSIK**********************************************PPPNMELLRSLN***************PPPPLSIPRKILP*************CGISK***********************AKPKLKALHWDKVRATSDRATVWDQLKSSSFQLNEDMMESLFGCNSVNSVPKEPTTRKSVLPPVELENRVLDPKKSQNIAILLRALNVTRDEVSEALLDGNPESLGAELLETLVKMAPTKEEEIKLREYKGDILKLGSAERFLKAVLDIPFAFKRVEAMLYRANFDAEVKYLRKSYQTLEAASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKAFKLDTLLKLVDIKGTDGKTTLLHFVVQEIIRAEGAG******************FKKQGLEVVSGLSRDLSNVKKAAGMDSDVLSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNAAKEEAHPFRIFMIVRDFLAILDHVCKEVGKMQERTMVGSARSFRISATASLPVLNRYNVR************
*KAYHLNLFLILSLSISCIAESDISIGISSSIQRRILHQPLFPASSPPPG*******************PFFPED*************************************KPAKKVAIAISVGIVTLGMLSALAFFLYRHRVK**********************PPSSFLYIGTVEPS*******************************LQPLPQ**************************************************************************************PEMKNVIIPSIKQQQPPLPP************************************************************************************************************************KPKLKALHWDKVRATSDRATVWDQLKSSSFQLNEDMMESLFGCNS*******************LENRVLDPKKSQNIAILLRALNVTRDEVSEALLDGNPESLGAELLETLVKMAPTKEEEIKLREYKGDILKLGSAERFLKAVLDIPFAFKRVEAMLYRANFDAEVKYLRKSYQTLEAASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKAFKLDTLLKLVDIKGTDGKTTLLHFVVQEIIRAE****************MREDEFKKQGLEVVSGLSRDLSNVKKAAGMDSDVLSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNAAKEEAHPFRIFMIVRDFLAILDHVCKEVGKMQ****************************************
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MKAYHLNLFLILSLSISCIAESDISIGISSSIQRRILHQPLFPASSPPPGAEPPPSPPPPPPSPESPDQPFFPEDPNGQSQDQNQPPPATTPATPSSSSNGSIPIPAATQPAKPAKKVAIAISVGIVTLGMLSALAFFLYRHRVKHPGESQKLVGANSQGIQDEPRVPPSSFLYIGTVEPSRTSVSEAAANGSPYHKLDSVKRSDRYRPSPELQPLPQLTRPPSQNENSPAAMSSSDEESHDTAFYTPQCSSISNDEYCTPVVASSRSVHVNNNGTVNSVGHPNNSSVPHSKRTSPKSRLAASSPEMKNVIIPSIKQQQPPLPPAPPSQGMAERGTEQPRAEDSSRANPYSPKRPKFSSPPPPPPNMELLRSLNSNSSSQTTKIPVPPPPPPPLSIPRKILPKQQSLSSPNCPSGCGISKSPVEEVSKSTSTSEKTEGDGTDGAKPKLKALHWDKVRATSDRATVWDQLKSSSFQLNEDMMESLFGCNSVNSVPKEPTTRKSVLPPVELENRVLDPKKSQNIAILLRALNVTRDEVSEALLDGNPESLGAELLETLVKMAPTKEEEIKLREYKGDILKLGSAERFLKAVLDIPFAFKRVEAMLYRANFDAEVKYLRKSYQTLEAASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKAFKLDTLLKLVDIKGTDGKTTLLHFVVQEIIRAEGAGTKSTEVNVESKNSMREDEFKKQGLEVVSGLSRDLSNVKKAAGMDSDVLSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFxxxxxxxxxxxxxxxxxxxxxVKEVTEYFHGNAAKEEAHPFRIFMIVRDFLAILDHVCKEVGKMQERTMVGSARSFRISATASLPVLNRYNVRQDTSSDEDSSSP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query885 2.2.26 [Sep-21-2011]
Q9FJX6899 Formin-like protein 6 OS= yes no 0.915 0.901 0.605 0.0
Q10Q99892 Formin-like protein 8 OS= yes no 0.548 0.543 0.642 1e-174
Q8H8K7849 Formin-like protein 4 OS= no no 0.520 0.542 0.631 1e-166
Q8S0F0960 Formin-like protein 1 OS= no no 0.498 0.459 0.641 1e-164
Q9SE971051 Formin-like protein 1 OS= no no 0.523 0.440 0.597 1e-158
Q69MT2788 Formin-like protein 15 OS no no 0.481 0.540 0.592 1e-137
O22824894 Formin-like protein 2 OS= no no 0.533 0.527 0.539 1e-137
Q0D519774 Formin-like protein 13 OS no no 0.461 0.527 0.584 1e-134
Q9MA60884 Formin-like protein 11 OS no no 0.447 0.447 0.527 1e-112
Q94B77900 Formin-like protein 5 OS= no no 0.450 0.443 0.496 1e-106
>sp|Q9FJX6|FH6_ARATH Formin-like protein 6 OS=Arabidopsis thaliana GN=FH6 PE=1 SV=1 Back     alignment and function desciption
 Score =  931 bits (2407), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/908 (60%), Positives = 630/908 (69%), Gaps = 98/908 (10%)

Query: 25  SIGISSSIQRRILHQPLFPASSPPPGAEPPPSPPPPPPSPESPDQPFFPEDPNGQSQDQN 84
           S+ +SS   RRILHQPLFP SS PP   P     P PP P++PDQPFFPE+P+   Q   
Sbjct: 19  SVSVSSEAHRRILHQPLFPESSTPP--PPDFQSTPSPPLPDTPDQPFFPENPSTPQQTLF 76

Query: 85  QPPPATTPATPSSSSNGSIPIPAAT-QPAKPAKKVAIAISVGIVTLGMLSALAFFLYRHR 143
            PPP       S+  NG +PIP AT Q AKP KKVAI ISVGIVTLGMLSALAFFLYRH+
Sbjct: 77  PPPPPPV----SADVNGGLPIPTATTQSAKPGKKVAIVISVGIVTLGMLSALAFFLYRHK 132

Query: 144 VKHPGESQKLV-----GANSQGIQDE---PRVPPSSFLYIGTVEPSRTSVSEAAA----- 190
            KH  ++QKLV     G  S+  Q++   P    S+FLY+GTVEP+R S SE+       
Sbjct: 133 AKHASDTQKLVTGGGDGGGSRRFQEDSGPPTTTSSTFLYMGTVEPTRVSASESNGGTNGP 192

Query: 191 -NGSPYHKLDSVKRSDRYRPSPELQPLPQLTRPPSQNENSPAAMSSS----DEESHDTAF 245
            N SPY KL+S KRS+RYRPSPELQPLP L +PP  ++NSP+A+S S     EE  DTAF
Sbjct: 193 VNSSPYRKLNSAKRSERYRPSPELQPLPPLAKPPQPSDNSPSALSPSSSSSGEECRDTAF 252

Query: 246 YTPQCSSISNDEYCTPVVASSRSVHVNNNGTVNSVGHPNNSSVPHSKRTSPKSRL----- 300
           YTP  S+IS+D+                 G   +     N S+PHSKRTSP+S+      
Sbjct: 253 YTPHGSAISSDD-----------------GYYTAFPRSANGSLPHSKRTSPRSKFGSAPT 295

Query: 301 --AASSPEMKNVIIPSIKQQQPPLPPAPPSQGMAERGTEQPRAEDSSRANPYSPKRPKFS 358
             A+ SPEMK+VIIPSIKQ+ PP    PP +G+          E   +  PYS  +PKFS
Sbjct: 296 TAASRSPEMKHVIIPSIKQKLPPPVQPPPLRGL----------ESDEQELPYSQNKPKFS 345

Query: 359 SPPPPPPNMELLRSLNSNSSSQTTKIPVPPPP---------------------PPPLSIP 397
            PPPPP N    +++    S        PPP                      P    + 
Sbjct: 346 QPPPPP-NRAAFQAITQEKSPVPPPRRSPPPLQTPPPPPPPPPLAPPPPPQKRPRDFQML 404

Query: 398 RKILPKQQSLSSPNCPSGCGISKSP------VEEVSKSTSTSEKTEGDG-TDGAKPKLKA 450
           RK+   + + +S   PS     K+P      VEEV+  ++ S +  GDG TD +KPKLK 
Sbjct: 405 RKVTNSEATTNSTTSPSRKQAFKTPSPKTKAVEEVNSVSAGSLEKSGDGDTDPSKPKLKP 464

Query: 451 LHWDKVRATSDRATVWDQLKSSSFQLNEDMMESLFGCNSVNSVPKEPTTRKSVLPPVELE 510
           LHWDKVRA+SDRATVWDQLKSSSFQLNED ME LFGCNS +S PKEP  R+SV+P  E E
Sbjct: 465 LHWDKVRASSDRATVWDQLKSSSFQLNEDRMEHLFGCNSGSSAPKEPV-RRSVIPLAENE 523

Query: 511 NRVLDPKKSQNIAILLRALNVTRDEVSEALLDGNPESLGAELLETLVKMAPTKEEEIKLR 570
           NRVLDPKKSQNIAILLRALNVTR+EVSEAL DGNPESLGAELLETLVKMAPTKEEEIKLR
Sbjct: 524 NRVLDPKKSQNIAILLRALNVTREEVSEALTDGNPESLGAELLETLVKMAPTKEEEIKLR 583

Query: 571 EYKGDILKLGSAERFLKAVLDIPFAFKRVEAMLYRANFDAEVKYLRKSYQTLEAASEELK 630
           EY GD+ KLG+AERFLK +LDIPFAFKRVEAMLYRANFDAEVKYLR S+QTLE AS ELK
Sbjct: 584 EYSGDVSKLGTAERFLKTILDIPFAFKRVEAMLYRANFDAEVKYLRNSFQTLEEASLELK 643

Query: 631 NSRLFLKLLEAVLKTGNRMNVGTNRGDAKAFKLDTLLKLVDIKGTDGKTTLLHFVVQEII 690
            SRLFLKLLEAVL TGNRMNVGTNRGDA AFKLDTLLKLVDIKG DGKTTLLHFVVQEI 
Sbjct: 644 ASRLFLKLLEAVLMTGNRMNVGTNRGDAIAFKLDTLLKLVDIKGVDGKTTLLHFVVQEIT 703

Query: 691 RAEGAGTKSTEVNVESKNSMREDEFKKQGLEVVSGLSRDLSNVKKAAGMDSDVLSSYVMK 750
           R+EG  T   E  +   N    D F+KQGL+VV+GLSRDL NVKK+AGMD DVLSSYV K
Sbjct: 704 RSEGTTTTKDETILHGNN----DGFRKQGLQVVAGLSRDLVNVKKSAGMDFDVLSSYVTK 759

Query: 751 LEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFH 810
           LEMGL+K+R  L+ E    QG+FF SMK FLKEAEEEI +IK  ER ALS+VKEVTEYFH
Sbjct: 760 LEMGLDKLRSFLKTET--TQGRFFDSMKTFLKEAEEEIRKIKGGERKALSMVKEVTEYFH 817

Query: 811 GNAAKEEAHPFRIFMIVRDFLAILDHVCKEVGKMQE-RTMVG--SARSFRISATASLPVL 867
           GNAA+EEAHP RIFM+VRDFL +LD+VCKEV  MQE  T +G  SARSFRISATASLPVL
Sbjct: 818 GNAAREEAHPLRIFMVVRDFLGVLDNVCKEVKTMQEMSTSMGSASARSFRISATASLPVL 877

Query: 868 NRYNVRQD 875
           +RY  RQD
Sbjct: 878 HRYKARQD 885
Might be involved in the organization and polarity of the actin cytoskeleton.
Arabidopsis thaliana (taxid: 3702)
>sp|Q10Q99|FH8_ORYSJ Formin-like protein 8 OS=Oryza sativa subsp. japonica GN=FH8 PE=2 SV=1 Back     alignment and function description
>sp|Q8H8K7|FH4_ORYSJ Formin-like protein 4 OS=Oryza sativa subsp. japonica GN=FH4 PE=3 SV=1 Back     alignment and function description
>sp|Q8S0F0|FH1_ORYSJ Formin-like protein 1 OS=Oryza sativa subsp. japonica GN=FH1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SE97|FH1_ARATH Formin-like protein 1 OS=Arabidopsis thaliana GN=FH1 PE=1 SV=1 Back     alignment and function description
>sp|Q69MT2|FH15_ORYSJ Formin-like protein 15 OS=Oryza sativa subsp. japonica GN=FH15 PE=2 SV=1 Back     alignment and function description
>sp|O22824|FH2_ARATH Formin-like protein 2 OS=Arabidopsis thaliana GN=FH2 PE=3 SV=1 Back     alignment and function description
>sp|Q0D519|FH13_ORYSJ Formin-like protein 13 OS=Oryza sativa subsp. japonica GN=FH13 PE=2 SV=1 Back     alignment and function description
>sp|Q9MA60|FH11_ARATH Formin-like protein 11 OS=Arabidopsis thaliana GN=FH11 PE=2 SV=1 Back     alignment and function description
>sp|Q94B77|FH5_ARATH Formin-like protein 5 OS=Arabidopsis thaliana GN=FH5 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query885
225438990886 PREDICTED: formin-like protein 6-like [V 0.963 0.962 0.704 0.0
296087325852 unnamed protein product [Vitis vinifera] 0.925 0.961 0.681 0.0
255568581903 conserved hypothetical protein [Ricinus 0.922 0.903 0.697 0.0
449458688888 PREDICTED: formin-like protein 6-like [C 0.914 0.911 0.668 0.0
356540633895 PREDICTED: formin-like protein 6-like [G 0.943 0.932 0.632 0.0
356514342889 PREDICTED: formin-like protein 6-like [G 0.955 0.951 0.617 0.0
356565497884 PREDICTED: uncharacterized protein LOC10 0.920 0.921 0.639 0.0
297797635895 hypothetical protein ARALYDRAFT_919956 [ 0.910 0.900 0.612 0.0
15240762899 formin-like protein 6 [Arabidopsis thali 0.915 0.901 0.605 0.0
357482623908 Formin-like protein [Medicago truncatula 0.918 0.895 0.619 0.0
>gi|225438990|ref|XP_002279613.1| PREDICTED: formin-like protein 6-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1097 bits (2838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 631/896 (70%), Positives = 705/896 (78%), Gaps = 43/896 (4%)

Query: 1   MKAYHLNLFLILSLSISCIAESDISIGISSSIQRRILHQPLFPASSPPPGAEPPPSPPPP 60
           M+     LF +L LS S      +    ++  QRRILHQPLFP SSPPPGA+ PP PPP 
Sbjct: 1   MRLVCFYLFFVLLLSFS------LHTAATALSQRRILHQPLFPDSSPPPGADSPPPPPPD 54

Query: 61  PPSPESPDQPFFPEDPNGQSQDQNQPPPATTPATPSSSSNGSIPIPAATQPAKPAKKVAI 120
                +PDQPFFPE P G + D +QPPPATT        NG+ PIP ATQP KP KKVAI
Sbjct: 55  SQVFPNPDQPFFPEVPTGPTTDASQPPPATT--------NGTAPIPTATQPTKPTKKVAI 106

Query: 121 AISVGIVTLGMLSALAFFLYRHRVKHPGESQKLVGANSQGIQDEPRVPPSSFLYIGTVEP 180
           AISVGIVTLGMLSALAFFLYRHRVKHPGESQKLVG  SQ  Q+E RVPPSSFLYIGTVEP
Sbjct: 107 AISVGIVTLGMLSALAFFLYRHRVKHPGESQKLVGGGSQSFQEESRVPPSSFLYIGTVEP 166

Query: 181 SRTSVSEA----AANGSPYHKLDSVKRSDRYRPSPELQPLPQLTRPPSQNENSPAAMSSS 236
           SR S +EA      NGSPYHKL+S+KRSDRYRPSPELQPLP L  PP +N NSP AMS S
Sbjct: 167 SRRSGNEANGANGTNGSPYHKLNSIKRSDRYRPSPELQPLPPLNNPPVRN-NSPQAMSWS 225

Query: 237 DEESHDTAFYTPQCSSISNDE-YCTPVVASSRSVHVNNNGTVNSVGHPNNSSVPHSKRTS 295
           DEE H+T FYTPQ SSI NDE + TPV   + +   +++ T         S VPHSKRTS
Sbjct: 226 DEEGHETVFYTPQASSIGNDEGFYTPVSRQNSNSINSSSATPAKTESHGTSPVPHSKRTS 285

Query: 296 PKSRLAASSPEMKNVIIPSIKQQQPPLPPAPPSQGMAERGTEQPRAEDSSRANPYSPKRP 355
           PKSR +ASSPE K+ IIPSIKQQ PP PP PP      +      A+ S  A  ++PKRP
Sbjct: 286 PKSRRSASSPETKHAIIPSIKQQPPPPPPPPPPPSRPPQQLS---AQSSQLAIAHTPKRP 342

Query: 356 KFSSPPPPPPNMELLRSL-NSNSSSQTTKIPVPPPPPPPLSIPRK---------ILPK-- 403
           KFS+PPPPP N+  L++L N  + + T   P PPPPPPPL+ PRK         ++P   
Sbjct: 343 KFSTPPPPP-NVARLQALTNQFTETSTIPAPPPPPPPPPLTTPRKSGSSESSVPLIPSEV 401

Query: 404 ----QQSLSSPNCPSGCGISKSPVEEVSKSTSTSEKTEGDGTDGAKPKLKALHWDKVRAT 459
               Q  +   N   G  ++K P+E  S   S+S + + D  DGAKPKLK LHWDKVRAT
Sbjct: 402 LTTPQSRILKTNSTPGNEMTK-PLENGSGGASSSGRLDADDVDGAKPKLKPLHWDKVRAT 460

Query: 460 SDRATVWDQLKSSSFQLNEDMMESLFGCNSVNSVPKEPTTRKSVLPPVELENRVLDPKKS 519
           SDRATVWDQLKSSSFQLNEDMME+LFGCNS  S+PKE  TRKSVLPPVE ENRVLDPKKS
Sbjct: 461 SDRATVWDQLKSSSFQLNEDMMETLFGCNSAVSIPKE-ATRKSVLPPVEQENRVLDPKKS 519

Query: 520 QNIAILLRALNVTRDEVSEALLDGNPESLGAELLETLVKMAPTKEEEIKLREYKGDILKL 579
           QNIAILLRALNVTRDEVSEALLDGNPESLGAELLETLVKMAPTKEEEIKLR+Y GDI KL
Sbjct: 520 QNIAILLRALNVTRDEVSEALLDGNPESLGAELLETLVKMAPTKEEEIKLRDYSGDISKL 579

Query: 580 GSAERFLKAVLDIPFAFKRVEAMLYRANFDAEVKYLRKSYQTLEAASEELKNSRLFLKLL 639
           G+AERFLKAVLDIP+AFKRVEAMLYRANFD EVKYLRKS+QTLEAASEELKNSRLFLKLL
Sbjct: 580 GTAERFLKAVLDIPYAFKRVEAMLYRANFDTEVKYLRKSFQTLEAASEELKNSRLFLKLL 639

Query: 640 EAVLKTGNRMNVGTNRGDAKAFKLDTLLKLVDIKGTDGKTTLLHFVVQEIIRAEGAGTKS 699
           EAVL+TGNRMNVGTNRGDA+AFKLDTLLKLVDIKGTDGKTTLLHFVVQEIIR+E  G+  
Sbjct: 640 EAVLRTGNRMNVGTNRGDARAFKLDTLLKLVDIKGTDGKTTLLHFVVQEIIRSEDGGSDP 699

Query: 700 TEVNVESKNSMR-EDEFKKQGLEVVSGLSRDLSNVKKAAGMDSDVLSSYVMKLEMGLEKV 758
           T  N+++K+  + ED+FKKQGL+VV+GLSRDL NVKKAAGMDSDVLSSYV KLE+GLEKV
Sbjct: 700 TNENLQTKSQTKMEDDFKKQGLQVVAGLSRDLGNVKKAAGMDSDVLSSYVSKLEVGLEKV 759

Query: 759 RLVLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNAAKEEA 818
           +LVLQY+KP++ GKFF SMK+FLKEAEEEI +IK DER AL LVKE TEYFHG+AAKEEA
Sbjct: 760 KLVLQYQKPNVTGKFFDSMKLFLKEAEEEIIKIKTDERKALLLVKEATEYFHGDAAKEEA 819

Query: 819 HPFRIFMIVRDFLAILDHVCKEVGKMQERTMVGSARSFRISATASLPVLNRYNVRQ 874
           HPFRIFMIVRDFL+ILD VCKEVG+MQ+RTMVGSARSFRISATASLPVL+RYNVRQ
Sbjct: 820 HPFRIFMIVRDFLSILDQVCKEVGRMQDRTMVGSARSFRISATASLPVLSRYNVRQ 875

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296087325|emb|CBI33699.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255568581|ref|XP_002525264.1| conserved hypothetical protein [Ricinus communis] gi|223535422|gb|EEF37092.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|449458688|ref|XP_004147079.1| PREDICTED: formin-like protein 6-like [Cucumis sativus] gi|449489727|ref|XP_004158398.1| PREDICTED: formin-like protein 6-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356540633|ref|XP_003538791.1| PREDICTED: formin-like protein 6-like [Glycine max] Back     alignment and taxonomy information
>gi|356514342|ref|XP_003525865.1| PREDICTED: formin-like protein 6-like [Glycine max] Back     alignment and taxonomy information
>gi|356565497|ref|XP_003550976.1| PREDICTED: uncharacterized protein LOC100803578 [Glycine max] Back     alignment and taxonomy information
>gi|297797635|ref|XP_002866702.1| hypothetical protein ARALYDRAFT_919956 [Arabidopsis lyrata subsp. lyrata] gi|297312537|gb|EFH42961.1| hypothetical protein ARALYDRAFT_919956 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15240762|ref|NP_201548.1| formin-like protein 6 [Arabidopsis thaliana] gi|75171125|sp|Q9FJX6.1|FH6_ARATH RecName: Full=Formin-like protein 6; Short=AtFH6; Short=AtFORMIN-6; Flags: Precursor gi|9757868|dbj|BAB08455.1| formin-like protein [Arabidopsis thaliana] gi|37694426|gb|AAQ99143.1| formin-like protein AtFH6 [Arabidopsis thaliana] gi|332010965|gb|AED98348.1| formin-like protein 6 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357482623|ref|XP_003611598.1| Formin-like protein [Medicago truncatula] gi|355512933|gb|AES94556.1| Formin-like protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query885
TAIR|locus:2158576899 FH6 "formin homolog 6" [Arabid 0.497 0.489 0.758 1.5e-217
TAIR|locus:20944931051 AFH1 "formin homology 1" [Arab 0.488 0.411 0.625 3.8e-144
TAIR|locus:2043989894 AT2G43800 [Arabidopsis thalian 0.488 0.483 0.566 1.2e-125
TAIR|locus:2079807884 AT3G05470 [Arabidopsis thalian 0.447 0.447 0.525 2.8e-101
TAIR|locus:2172129900 Fh5 "formin homology5" [Arabid 0.467 0.46 0.482 8.7e-98
TAIR|locus:2156248782 AT5G48360 [Arabidopsis thalian 0.392 0.443 0.465 5.7e-84
TAIR|locus:2025981929 AT1G59910 [Arabidopsis thalian 0.455 0.433 0.380 5.5e-70
TAIR|locus:2020568760 FH8 "formin 8" [Arabidopsis th 0.282 0.328 0.476 3.7e-62
TAIR|locus:2079711841 AT3G07540 [Arabidopsis thalian 0.315 0.331 0.425 2.7e-60
MGI|MGI:2684972 1149 Fhdc1 "FH2 domain containing 1 0.359 0.276 0.302 4.2e-27
TAIR|locus:2158576 FH6 "formin homolog 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1626 (577.4 bits), Expect = 1.5e-217, Sum P(3) = 1.5e-217
 Identities = 343/452 (75%), Positives = 371/452 (82%)

Query:   438 GDG-TDGAKPKLKALHWDKVRATSDRATVWDQLKSSSFQLNEDMMESLFGCNSVNSVPKE 496
             GDG TD +KPKLK LHWDKVRA+SDRATVWDQLKSSSFQLNED ME LFGCNS +S PKE
Sbjct:   451 GDGDTDPSKPKLKPLHWDKVRASSDRATVWDQLKSSSFQLNEDRMEHLFGCNSGSSAPKE 510

Query:   497 PTTRKSVLPPVELENRVLDPKKSQNIAILLRALNVTRDEVSEALLDGNPESLGAELLETL 556
             P  R+SV+P  E ENRVLDPKKSQNIAILLRALNVTR+EVSEAL DGNPESLGAELLETL
Sbjct:   511 PV-RRSVIPLAENENRVLDPKKSQNIAILLRALNVTREEVSEALTDGNPESLGAELLETL 569

Query:   557 VKMAPTKEEEIKLREYKGDILKLGSAERFLKAVLDIPFAFKRVEAMLYRANFDAEVKYLR 616
             VKMAPTKEEEIKLREY GD+ KLG+AERFLK +LDIPFAFKRVEAMLYRANFDAEVKYLR
Sbjct:   570 VKMAPTKEEEIKLREYSGDVSKLGTAERFLKTILDIPFAFKRVEAMLYRANFDAEVKYLR 629

Query:   617 KSYQTLEAASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKAFKLDTLLKLVDIKGTD 676
              S+QTLE AS ELK SRLFLKLLEAVL TGNRMNVGTNRGDA AFKLDTLLKLVDIKG D
Sbjct:   630 NSFQTLEEASLELKASRLFLKLLEAVLMTGNRMNVGTNRGDAIAFKLDTLLKLVDIKGVD 689

Query:   677 GKTTLLHFVVQEIIRAEGAGTKSTEVNVESKNSMREDEFKKQGLEVVSGLSRDLSNVKKA 736
             GKTTLLHFVVQEI R+EG  T   E  +   N    D F+KQGL+VV+GLSRDL NVKK+
Sbjct:   690 GKTTLLHFVVQEITRSEGTTTTKDETILHGNN----DGFRKQGLQVVAGLSRDLVNVKKS 745

Query:   737 AGMDSDVLSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLXXXXXXXXXXXXXXX 796
             AGMD DVLSSYV KLEMGL+K+R  L+ E    QG+FF SMK FL               
Sbjct:   746 AGMDFDVLSSYVTKLEMGLDKLRSFLKTETT--QGRFFDSMKTFLKEAEEEIRKIKGGER 803

Query:   797 MALSLVKEVTEYFHGNAAKEEAHPFRIFMIVRDFLAILDHVCKEVGKMQER-TMVGSA-- 853
              ALS+VKEVTEYFHGNAA+EEAHP RIFM+VRDFL +LD+VCKEV  MQE  T +GSA  
Sbjct:   804 KALSMVKEVTEYFHGNAAREEAHPLRIFMVVRDFLGVLDNVCKEVKTMQEMSTSMGSASA 863

Query:   854 RSFRISATASLPVLNRYNVRQD-TSSDEDSSS 884
             RSFRISATASLPVL+RY  RQD TSSD + SS
Sbjct:   864 RSFRISATASLPVLHRYKARQDDTSSDSEHSS 895
GO:0003779 "actin binding" evidence=IEA;ISS
GO:0016043 "cellular component organization" evidence=IEA
GO:0030036 "actin cytoskeleton organization" evidence=IEA
GO:0005618 "cell wall" evidence=IDA
GO:0005634 "nucleus" evidence=IDA
GO:0005730 "nucleolus" evidence=IDA
GO:0005737 "cytoplasm" evidence=IDA
GO:0005819 "spindle" evidence=IDA
GO:0009524 "phragmoplast" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
TAIR|locus:2094493 AFH1 "formin homology 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043989 AT2G43800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079807 AT3G05470 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172129 Fh5 "formin homology5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156248 AT5G48360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025981 AT1G59910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020568 FH8 "formin 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079711 AT3G07540 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:2684972 Fhdc1 "FH2 domain containing 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FJX6FH6_ARATHNo assigned EC number0.60570.91520.9010yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query885
pfam02181372 pfam02181, FH2, Formin Homology 2 Domain 1e-140
smart00498392 smart00498, FH2, Formin Homology 2 Domain 1e-123
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 7e-12
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 7e-11
PHA03307 1352 PHA03307, PHA03307, transcriptional regulator ICP4 3e-08
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 5e-08
PHA03307 1352 PHA03307, PHA03307, transcriptional regulator ICP4 1e-07
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 9e-07
PRK14950585 PRK14950, PRK14950, DNA polymerase III subunits ga 6e-06
pfam04652315 pfam04652, DUF605, Vta1 like 1e-05
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 1e-05
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 9e-05
pfam07174297 pfam07174, FAP, Fibronectin-attachment protein (FA 1e-04
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 3e-04
pfam04652315 pfam04652, DUF605, Vta1 like 4e-04
pfam04652315 pfam04652, DUF605, Vta1 like 4e-04
PRK14086617 PRK14086, dnaA, chromosomal replication initiation 4e-04
PRK12270 1228 PRK12270, kgd, alpha-ketoglutarate decarboxylase; 4e-04
pfam05760272 pfam05760, IER, Immediate early response protein ( 5e-04
PRK13406584 PRK13406, bchD, magnesium chelatase subunit D; Pro 5e-04
PRK12323700 PRK12323, PRK12323, DNA polymerase III subunits ga 5e-04
PRK03427333 PRK03427, PRK03427, cell division protein ZipA; Pr 8e-04
PRK14948620 PRK14948, PRK14948, DNA polymerase III subunits ga 8e-04
PRK06995484 PRK06995, flhF, flagellar biosynthesis regulator F 0.001
TIGR02031589 TIGR02031, BchD-ChlD, magnesium chelatase ATPase s 0.001
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 0.002
COG5178 2365 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p 0.003
PHA03291401 PHA03291, PHA03291, envelope glycoprotein I; Provi 0.003
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 0.004
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 0.004
>gnl|CDD|216919 pfam02181, FH2, Formin Homology 2 Domain Back     alignment and domain information 
 Score =  421 bits (1084), Expect = e-140
 Identities = 174/395 (44%), Positives = 234/395 (59%), Gaps = 34/395 (8%)

Query: 445 KPKLKALHWDKVRATSDRATVWDQLKSSSFQLNEDM--MESLFGCNSVNSVPKEPTTRKS 502
           K KLK LHWDKV    DR TVWD+L   SF+ + D+  +E LF   +     K+   + S
Sbjct: 8   KKKLKPLHWDKVNPAQDRGTVWDELDEESFEKDLDLSELEELFSAKAKKKKSKKSEKKSS 67

Query: 503 VLPPVELENRVLDPKKSQNIAILLRALNVTRDEVSEALLDGNPESLGAELLETLVKMAPT 562
                + E  VLDPK+SQNIAILLR L +  +E+ +A+L+ +   LG ELLE L+KMAPT
Sbjct: 68  SKKKKK-EISVLDPKRSQNIAILLRKLKLPPEEIVQAILEMDESVLGLELLENLLKMAPT 126

Query: 563 KEEEIKLREYKGDILKLGSAERFLKAVLDIPFAFKRVEAMLYRANFDAEVKYLRKSYQTL 622
           KEE  KL+EYKGD  KLG AE+FL  +  IP   +R+EA+L+++ F+ EV+ L+ S +TL
Sbjct: 127 KEELKKLKEYKGDPSKLGRAEQFLLELSKIPRLEERLEALLFKSTFEEEVEELKPSLETL 186

Query: 623 EAASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKAFKLDTLLKLVDIKGTDGKTTLL 682
           EAASEEL+ SR F KLLE +L  GN MN GT RG+AK FKL +LLKL D K TD KTTLL
Sbjct: 187 EAASEELRESRKFKKLLELILALGNYMNSGTRRGNAKGFKLSSLLKLSDTKSTDNKTTLL 246

Query: 683 HFVVQEIIRAEGAGTKSTEVNVESKNSMREDEFKKQGLEVVSGLSRDLSNVKKAAGMDSD 742
           H++V+ I                              L  +   S +LS+V+KAA +D +
Sbjct: 247 HYLVKIIRE---------------------------KLPDLLDFSSELSHVEKAAKVDLE 279

Query: 743 VLSSYVMKLEMGLEKVR--LVLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKADERMALS 800
            L   V +LE GL+K+   L L         KF   MK FL+EAEE++ ++++  + A+ 
Sbjct: 280 QLEKDVKELEKGLKKLERELELSALDEHPDDKFVEKMKEFLEEAEEKLDKLESLLKEAME 339

Query: 801 LVKEVTEYFHGNAAKEEAHPFRIFMIVRDFLAILD 835
           L KE+TEYF      +E  P   F I+RDFL +  
Sbjct: 340 LFKELTEYF--GEDPKETSPEEFFKILRDFLRMFK 372

Length = 372
>gnl|CDD|214697 smart00498, FH2, Formin Homology 2 Domain Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP) Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like Back     alignment and domain information
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like Back     alignment and domain information
>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional Back     alignment and domain information
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information
>gnl|CDD|218735 pfam05760, IER, Immediate early response protein (IER) Back     alignment and domain information
>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional Back     alignment and domain information
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional Back     alignment and domain information
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 885
smart00498432 FH2 Formin Homology 2 Domain. FH proteins control 100.0
KOG19241102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 100.0
PF02181370 FH2: Formin Homology 2 Domain; InterPro: IPR015425 100.0
KOG1922833 consensus Rho GTPase effector BNI1 and related for 100.0
KOG1925 817 consensus Rac1 GTPase effector FHOS [Signal transd 100.0
KOG1923830 consensus Rac1 GTPase effector FRL [Signal transdu 100.0
KOG19241102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 98.07
smart00498432 FH2 Formin Homology 2 Domain. FH proteins control 97.86
PHA032473151 large tegument protein UL36; Provisional 94.85
PHA032473151 large tegument protein UL36; Provisional 94.48
KOG3671569 consensus Actin regulatory protein (Wiskott-Aldric 93.25
PF0869340 SKG6: Transmembrane alpha-helix domain; InterPro: 86.4
KOG1962216 consensus B-cell receptor-associated protein and r 86.13
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 85.01
KOG1922833 consensus Rho GTPase effector BNI1 and related for 80.92
>smart00498 FH2 Formin Homology 2 Domain Back     alignment and domain information 
Probab=100.00  E-value=8.1e-70  Score=618.19  Aligned_cols=373  Identities=38%  Similarity=0.575  Sum_probs=337.5

Q ss_pred             CCCCCccccccccccccccccCCceecccccccccCCHHHHHHhhccCCCCCCCCCC-CCcCCC-CCCccccccccChhh
Q 038630          441 TDGAKPKLKALHWDKVRATSDRATVWDQLKSSSFQLNEDMMESLFGCNSVNSVPKEP-TTRKSV-LPPVELENRVLDPKK  518 (885)
Q Consensus       441 ~~~pK~KlK~LhW~kV~~~~~k~TIW~~l~~~~~~lD~d~LE~LF~~k~~~~~~K~~-~~kk~v-~~~~~k~isVLD~KR  518 (885)
                      ..+|++|||+|||++|+..++++|||+++++.. ++|+++||++|+.+......+.. ..++.. ..+..+.++|||+||
T Consensus         3 ~~~P~~klK~l~W~ki~~~~~~~tvW~~i~~~~-~~d~~~lE~lF~~k~~~~~~~~~~~~~~~~~~~~~~~~v~ild~kr   81 (432)
T smart00498        3 EPKPKKKLKPLHWDKLNPLDPRGTVWDKIDENS-EGDLDELEELFAAKEKTKSASKDVSEKKSILKKKVSQEFKILDPKR   81 (432)
T ss_pred             CCCCCCCCcCcCceeCCCccccCChhhhcCccc-ccCHHHHHHHhCcCccccCccccccccccccccccccceEeechhH
Confidence            468999999999999999999999999999876 79999999999987654432221 111111 123457789999999


Q ss_pred             HHHHHHHhhhcCCCHHHHHHHHHcCCCCCCCHHHHHHHHhcCCCHHHHHHHHhhhcC-cCCCChHHHHHHHHhCcccHHH
Q 038630          519 SQNIAILLRALNVTRDEVSEALLDGNPESLGAELLETLVKMAPTKEEEIKLREYKGD-ILKLGSAERFLKAVLDIPFAFK  597 (885)
Q Consensus       519 aqNIsI~L~klkls~eeI~~AIl~~D~~~L~~E~Le~Llk~lPT~EEi~~Lk~~~gD-~~~L~~aEqFl~~L~~IP~l~~  597 (885)
                      +|||+|+|++|+++.++|++||+.||...|+.|.|+.|++++||.||+++|++|.|+ .+.|+++|||+++|++||++.+
T Consensus        82 s~ni~I~L~~l~~~~~ei~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~~L~~~Eqfl~~l~~ip~~~~  161 (432)
T smart00498       82 SQNLAILLRKLHMSYEEICEAILEGDEDVLSVDLLEQLLKYAPTKEELKKLREYKEEDPEELARAEQFLLLISNIPYLEE  161 (432)
T ss_pred             HhhHHHHHHhcCCCHHHHHHHHHhcChhhCCHHHHHHHHhhCcCHHHHHHHHHhcccchhhcchHHHHHHHHhCCCCHHH
Confidence            999999999999999999999999999999999999999999999999999999987 6999999999999999999999


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhhccccccCCCCCceeeeeccchhcccccccCCC
Q 038630          598 RVEAMLYRANFDAEVKYLRKSYQTLEAASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKAFKLDTLLKLVDIKGTDG  677 (885)
Q Consensus       598 RL~allfk~~F~~~v~~l~~~l~~l~~A~~eLr~S~~L~~lL~~VLaiGN~LN~gt~rG~A~GFkLdSL~KL~dtKs~D~  677 (885)
                      ||+||+|+.+|++.+++|++.|+++..||++|++|+.|+.||++||++|||||+|+.||+|+||+|++|.||.|||++|+
T Consensus       162 Rl~~~~f~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~mN~g~~rg~A~GFkL~sL~KL~d~Ks~d~  241 (432)
T smart00498      162 RLNALLFKANFEEEVEDLKPQLEKVEAACEELRESKKFRKLLELILAIGNYMNSGSRRGQAYGFKLSSLLKLSDVKSADN  241 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhCcccCCCcCCCcceeeHHHHHHHHhhhccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccHHHHHHHHHHHHhCCCCCCccccccccCccchHHHHhhchhhhcccccchhhhhhhcCCCHHHHHHHHHHHHHHHHH
Q 038630          678 KTTLLHFVVQEIIRAEGAGTKSTEVNVESKNSMREDEFKKQGLEVVSGLSRDLSNVKKAAGMDSDVLSSYVMKLEMGLEK  757 (885)
Q Consensus       678 k~TLLhyLvq~Iir~e~~~L~~~n~~~~~~~~~~~E~~~k~gl~~V~~l~~EL~~V~kAAkvdld~L~~dv~kLe~gl~k  757 (885)
                      ++|||||||+.|.++++                           .+.+|.+||.+|..|++++ ++|.+++++|+++++.
T Consensus       242 k~tLLhylv~~i~~~~p---------------------------~~~~f~~el~~v~~askvs-~~l~~~~~~l~~~~~~  293 (432)
T smart00498      242 KTTLLHFLVKIIRKKYP---------------------------DLLDFYSDLHHLDKAKVNL-EQLEKDVKQLERQIKN  293 (432)
T ss_pred             CccHHHHHHHHHHHhCh---------------------------hhccchhhhccHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            99999999998876542                           2556889999999999999 9999999999999999


Q ss_pred             HHHHHHhcC--CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCChhhhHHHHHHHHHHHH
Q 038630          758 VRLVLQYEK--PDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNAAKEEAHPFRIFMIVRDFLAILD  835 (885)
Q Consensus       758 v~~~Lq~~~--~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~~k~e~~P~efF~il~dFl~~ld  835 (885)
                      ++..+....  ...+|+|..+|..|+..|..+++.|+..++++.+.|++++.||||++..  ..+++||++|.+|+..|.
T Consensus       294 ~e~~~~~l~~~~~~~d~f~~~m~~F~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~--~~~~efF~~f~~F~~~f~  371 (432)
T smart00498      294 LETDLGGLSDPENLDDKFIEVMKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKD--TSPEEFFKDFNEFLKEFS  371 (432)
T ss_pred             HHHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CCHHHHHHHHHHHHHHHH
Confidence            887654433  2235899999999999999999999999999999999999999999886  468999999999999999


Q ss_pred             HHHHHHHHH
Q 038630          836 HVCKEVGKM  844 (885)
Q Consensus       836 ka~kE~~k~  844 (885)
                      +|++|+.+.
T Consensus       372 ka~~en~~~  380 (432)
T smart00498      372 KAAEENIKK  380 (432)
T ss_pred             HHHHHHHHH
Confidence            999988763

FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis [] Back     alignment and domain information
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>smart00498 FH2 Formin Homology 2 Domain Back     alignment and domain information
>PHA03247 large tegument protein UL36; Provisional Back     alignment and domain information
>PHA03247 large tegument protein UL36; Provisional Back     alignment and domain information
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ] Back     alignment and domain information
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query885
2j1d_G483 Crystallization Of Hdaam1 C-Terminal Fragment Lengt 2e-22
2z6e_A419 Crystal Structure Of Human Daam1 Fh2 Length = 419 3e-22
3o4x_E467 Crystal Structure Of Complex Between Amino And Carb 9e-19
1v9d_A340 Crystal Structure Of The Core Fh2 Domain Of Mouse M 2e-18
3obv_E457 Autoinhibited Formin Mdia1 Structure Length = 457 2e-18
4eah_A402 Crystal Structure Of The Formin Homology 2 Domain O 2e-17
>pdb|2J1D|G Chain G, Crystallization Of Hdaam1 C-Terminal Fragment Length = 483 Back     alignment and structure 
Iteration: 1

 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 112/413 (27%), Positives = 183/413 (44%), Gaps = 53/413 (12%)
Query: 448 LKALHWDKVRATSDRATVWDQLKSSS-FQLN--EDMMESL--------FGCNSVNSVPKE 496
           LK+ +W K+       TVW ++  +  F++   ED+  +         F  NS NS  KE
Sbjct: 15  LKSFNWSKLPENKLEGTVWTEIDDTKVFKILDLEDLERTFSAYQRQQDFFVNS-NSKQKE 73
Query: 497 PT----TRKSVLPPVELENRVLDPKKSQNIAILLRALNVTRDEVSEALLDGNP-ESLGAE 551
                 T  S L   EL   V+D +++QN  ILL  L ++ DE+  A+L  +  E L  +
Sbjct: 74  ADAIDDTLSSKLKVKELS--VIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLPKD 131
Query: 552 LLETLVKMAPTKEEEIKLREYKGDILKLGSAERFLKAVLDIPFAFKRVEAMLYRANFDAE 611
           +LE L+K  P K +   L E+K ++ ++  A+RFL  +  I    +R++++ ++  F   
Sbjct: 132 MLEQLLKFVPEKSDIDLLEEHKHELDRMAKADRFLFEMSRINHYQQRLQSLYFKKKFAER 191
Query: 612 VKYLRKSYQTLEAASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKAFKLDTLLKLVD 671
           V  ++   + + + SEE+  S    +LLE VL  GN MN G  RG+A  FK+ +L K+ D
Sbjct: 192 VAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKG-QRGNAYGFKISSLNKIAD 250
Query: 672 IKGT-DGKTTLLHFVVQEIIRAEGAGTKSTEVNVESKNSMREDEFKKQGLEVVSGLSRDL 730
            K + D   TLLH+++                 VE+K               V  L+ +L
Sbjct: 251 TKSSIDKNITLLHYLI---------------TIVENK------------YPSVLNLNEEL 283
Query: 731 SNVKKAAGMDSDVLSSYVMKLEMGLEKVRLVLQYEK---PDMQGKFFHSMKMFLXXXXXX 787
            ++ +AA ++   L   +  L  GL+ V   L+Y+K   P    KF   +  F+      
Sbjct: 284 RDIPQAAKVNMTELDKEISTLRSGLKAVETELEYQKSQPPQPGDKFVSVVSQFITVASFS 343
Query: 788 XXXXXXXXXMALSLVKEVTEYFHGNAAKEEAHPFRIFMIVRDFLAILDHVCKE 840
                     A  L  +  ++F   A K    P   F I   FL  +    +E
Sbjct: 344 FSDVEDLLAEAKDLFTKAVKHFGEEAGK--IQPDEFFGIFDQFLQAVSEAKQE 394
>pdb|2Z6E|A Chain A, Crystal Structure Of Human Daam1 Fh2 Length = 419 Back     alignment and structure
>pdb|3O4X|E Chain E, Crystal Structure Of Complex Between Amino And Carboxy Terminal Fragments Of Mdia1 Length = 467 Back     alignment and structure
>pdb|1V9D|A Chain A, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1 Length = 340 Back     alignment and structure
>pdb|3OBV|E Chain E, Autoinhibited Formin Mdia1 Structure Length = 457 Back     alignment and structure
>pdb|4EAH|A Chain A, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3 Bound To Actin Length = 402 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query885
3obv_E457 Protein diaphanous homolog 1; autoinhibition, acti 1e-113
2j1d_G483 DAAM1, disheveled-associated activator of morphoge 1e-108
1v9d_A340 Diaphanous protein homolog 1; helix bundle, protei 1e-104
1ux5_A411 BNI1 protein; structural protein, FH2 actin cytosk 1e-88
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-10
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 7e-06
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 5e-05
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 6e-05
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 2e-04
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 2e-04
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 2e-04
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 2e-04
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 3e-04
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 4e-04
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 7e-04
3h0g_A1752 DNA-directed RNA polymerase II subunit RPB1; trans 2e-05
3gdb_A937 Endo-D, putative uncharacterized protein SPR0440; 5e-04
1pk8_A422 RAT synapsin I; ATP binding, ATP grAsp, calcium (I 9e-04
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D Length = 457 Back     alignment and structure
 Score =  353 bits (908), Expect = e-113
 Identities = 105/412 (25%), Positives = 184/412 (44%), Gaps = 38/412 (9%)

Query: 445 KPKLKALHWDKVRATS-DRATVWDQLKSSSFQLNEDM--MESLFGCNSVNSVPKE----P 497
           + +L+  +W K  A    +   W ++K   F+ NE    +   F   +  S  K+     
Sbjct: 7   EVQLRRPNWSKFVAEDLSQDCFWTKVKEDRFENNELFAKLTLAFSAQTKTSKAKKDQEGG 66

Query: 498 TTRKSVLPPVELENRVLDPKKSQNIAILLRALNVTRDEVSEALLDGNPESLGAELLETLV 557
             +KSV      E +VLD K +QN++I L +  +   E+   +L+ N   L   +++ L+
Sbjct: 67  EEKKSVQKKKVKELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLI 126

Query: 558 KMAPTKEEEIKLREYKGDILKLGSAERFLKAVLDIPFAFKRVEAMLYRANFDAEVKYLRK 617
           K  P  E+   L E K +   L  +E+F   +  +P    R+ A+L++  F  +V+ ++ 
Sbjct: 127 KQMPEPEQLKMLSELKEEYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKP 186

Query: 618 SYQTLEAASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKAFKLDTLLKLVDIKGTDG 677
              ++ AA EEL+ S  F  LLE  L  GN MN G+    A  F +  L KL D K  D 
Sbjct: 187 EIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQ 246

Query: 678 KTTLLHFVVQEIIRAEGAGTKSTEVNVESKNSMREDEFKKQGLEVVSGLSRDLSNVKKAA 737
           K TLLHF+ +                        E++  +     V     +L++V+KA+
Sbjct: 247 KMTLLHFLAELC----------------------ENDHPE-----VLKFPDELAHVEKAS 279

Query: 738 GMDSDVLSSYVMKLEMGLEKVRLVLQY--EKPDMQGKFFHSMKMFLKEAEEEIARIKADE 795
            + ++ L   + +++  +  V   +Q      D + KF   M  F+K+A+E+  +++   
Sbjct: 280 RVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFVEKMTSFVKDAQEQYNKLRMMH 339

Query: 796 RMALSLVKEVTEYFHGNAAKEEAHPFRIFMIVRDFLAILDHVCKEVGKMQER 847
               +L KE+ +YF  +  K     F  FM + +F  +     KE  K +E 
Sbjct: 340 SNMETLYKELGDYFVFDPKKLSVEEF--FMDLHNFRNMFLQAVKENQKRRET 389
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A Length = 483 Back     alignment and structure
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1 Length = 340 Back     alignment and structure
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A Length = 411 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 Back     alignment and structure
>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 Back     alignment and structure
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query885
2j1d_G483 DAAM1, disheveled-associated activator of morphoge 100.0
3obv_E457 Protein diaphanous homolog 1; autoinhibition, acti 100.0
4eah_A402 Formin-like protein 3, actin, alpha skeletal muscl 100.0
1ux5_A411 BNI1 protein; structural protein, FH2 actin cytosk 100.0
1v9d_A340 Diaphanous protein homolog 1; helix bundle, protei 100.0
2ks1_B44 Epidermal growth factor receptor; ERBB1, ERBB2, tr 92.64
2l2t_A44 Receptor tyrosine-protein kinase ERBB-4; transmemb 91.7
2k1k_A38 Ephrin type-A receptor 1; EPHA1, receptor tyrosine 87.96
2jwa_A44 Receptor tyrosine-protein kinase ERBB-2; transmemb 86.75
2l9u_A40 Receptor tyrosine-protein kinase ERBB-3; transmenb 84.34
2k9y_A41 Ephrin type-A receptor 2; receptor tyrosine kinase 81.61
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A Back     alignment and structure
Probab=100.00  E-value=5e-73  Score=650.86  Aligned_cols=374  Identities=27%  Similarity=0.414  Sum_probs=334.4

Q ss_pred             CCCCCccccccccccccccccCCceecccccccc--cCCHHHHHHhhccCCCCCC--------CCCCCC-cC-CCCCCcc
Q 038630          441 TDGAKPKLKALHWDKVRATSDRATVWDQLKSSSF--QLNEDMMESLFGCNSVNSV--------PKEPTT-RK-SVLPPVE  508 (885)
Q Consensus       441 ~~~pK~KlK~LhW~kV~~~~~k~TIW~~l~~~~~--~lD~d~LE~LF~~k~~~~~--------~K~~~~-kk-~v~~~~~  508 (885)
                      ..+|+.+||+|||++|+..++++|||+++++..+  ++|+++||++|+++.....        .++.+. .. ....++.
T Consensus         8 ~~~P~~klK~l~W~ki~~~~~~~TiW~~~~~~~~~~~ld~~~lE~lF~~~~~~~~~~~~~~~~~k~~~s~~~~~~~~kk~   87 (483)
T 2j1d_G            8 IPQPTNALKSFNWSKLPENKLEGTVWTEIDDTKVFKILDLEDLERTFSAYQRQQDFFVNSNSKQKEADAIDDTLSSKLKV   87 (483)
T ss_dssp             CCCCSSCBCCCCCCCCCGGGCSSSGGGGCCGGGHHHHSCHHHHHHHTBSBC-----------------------------
T ss_pred             CCCCCCCCCCcCceECCcccccCCccCcCCchhhccccCHHHHHHHHhhhccccccccccccccccccccccccccccCC
Confidence            4689999999999999998889999999988753  5899999999998765331        011110 00 0123356


Q ss_pred             ccccccChhhHHHHHHHhhhcCCCHHHHHHHHHcCCC-CCCCHHHHHHHHhcCCCHHHHHHHHhhhcCcCCCChHHHHHH
Q 038630          509 LENRVLDPKKSQNIAILLRALNVTRDEVSEALLDGNP-ESLGAELLETLVKMAPTKEEEIKLREYKGDILKLGSAERFLK  587 (885)
Q Consensus       509 k~isVLD~KRaqNIsI~L~klkls~eeI~~AIl~~D~-~~L~~E~Le~Llk~lPT~EEi~~Lk~~~gD~~~L~~aEqFl~  587 (885)
                      ++++|||+||+|||+|+|++|++++++|++||++||. +.|+.|.|+.|++++||+||+++|++|.||...|+++||||+
T Consensus        88 ~~v~lLD~kRaqNi~I~L~~lk~~~~ei~~aIl~~D~~~~L~~e~l~~Ll~~~Pt~eE~~~l~~~~~d~~~L~~aEqFl~  167 (483)
T 2j1d_G           88 KELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLPKDMLEQLLKFVPEKSDIDLLEEHKHELDRMAKADRFLF  167 (483)
T ss_dssp             CCBCCSCHHHHHHHHHHHHHHCCCHHHHHHHHHTTSTTCCCCHHHHHHHHHSCCCHHHHHHHHTTTTCGGGBCHHHHHHH
T ss_pred             CcceeCCHHHHHHHHHHHhcCCCCHHHHHHHHHccCccccCCHHHHHHHHHhCCCHHHHHHHHHhccChhhcCHHHHHHH
Confidence            7899999999999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHhCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhhccccccCCCCCceeeeeccchh
Q 038630          588 AVLDIPFAFKRVEAMLYRANFDAEVKYLRKSYQTLEAASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKAFKLDTLL  667 (885)
Q Consensus       588 ~L~~IP~l~~RL~allfk~~F~~~v~~l~~~l~~l~~A~~eLr~S~~L~~lL~~VLaiGN~LN~gt~rG~A~GFkLdSL~  667 (885)
                      +|+.||+|++||+||+|+.+|++.+++|++.|..|..||++|++|+.|+.||++||++|||||+| .||+|+||+|++|.
T Consensus       168 ~l~~ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~~el~~S~~l~~lL~~IL~~GN~mN~g-~rg~A~GFkL~sL~  246 (483)
T 2j1d_G          168 EMSRINHYQQRLQSLYFKKKFAERVAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKG-QRGNAYGFKISSLN  246 (483)
T ss_dssp             HHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSCS-SSCCCSCCCGGGGG
T ss_pred             HHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhhhccC-CCCCceeeehHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999 79999999999999


Q ss_pred             cccccccC-CCCccHHHHHHHHHHHHhCCCCCCccccccccCccchHHHHhhchhhhcccccchhhhhhhcCCCHHHHHH
Q 038630          668 KLVDIKGT-DGKTTLLHFVVQEIIRAEGAGTKSTEVNVESKNSMREDEFKKQGLEVVSGLSRDLSNVKKAAGMDSDVLSS  746 (885)
Q Consensus       668 KL~dtKs~-D~k~TLLhyLvq~Iir~e~~~L~~~n~~~~~~~~~~~E~~~k~gl~~V~~l~~EL~~V~kAAkvdld~L~~  746 (885)
                      ||.|||++ |+++|||||||+.|.++.                           +.+.+|.+||.+|++|++|++++|..
T Consensus       247 KL~d~Ks~~d~k~TLLhylv~~v~~~~---------------------------p~l~~f~~eL~~v~~Askv~~~~l~~  299 (483)
T 2j1d_G          247 KIADTKSSIDKNITLLHYLITIVENKY---------------------------PSVLNLNEELRDIPQAAKVNMTELDK  299 (483)
T ss_dssp             GGGGSBCSSCTTCBHHHHHHHHHHHHC---------------------------GGGGGHHHHTTTHHHHHTCCHHHHHH
T ss_pred             hhhhcccCCCCCccHHHHHHHHHHHhC---------------------------chhhchHHHHhhHHHHhcCCHHHHHH
Confidence            99999995 999999999998776532                           34678899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcC---CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCChhhh
Q 038630          747 YVMKLEMGLEKVRLVLQYEK---PDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNAAKEEAHPFRI  823 (885)
Q Consensus       747 dv~kLe~gl~kv~~~Lq~~~---~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~~k~e~~P~ef  823 (885)
                      +|.+|+++++.++.+++...   .+.+|.|.++|..|+..|+.++..|+..+..|.+.|++++.|||||+.+  ..+++|
T Consensus       300 ~~~~L~~~l~~v~~~l~~~~~~~~~~~d~f~~~m~~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~yFGEd~~~--~~~~~f  377 (483)
T 2j1d_G          300 EISTLRSGLKAVETELEYQKSQPPQPGDKFVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVKHFGEEAGK--IQPDEF  377 (483)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTS--CCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CCHHHH
Confidence            99999999999999988754   2345799999999999999999999999999999999999999999876  478999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 038630          824 FMIVRDFLAILDHVCKEVGKM  844 (885)
Q Consensus       824 F~il~dFl~~ldka~kE~~k~  844 (885)
                      |++|.+|+..|++|++|++++
T Consensus       378 F~~~~~F~~~f~~A~~en~~~  398 (483)
T 2j1d_G          378 FGIFDQFLQAVSEAKQENENM  398 (483)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999764
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D Back     alignment and structure
>4eah_A Formin-like protein 3, actin, alpha skeletal muscle; ATP binding, cytoskeleton, FMNL3, protein BIN; HET: ATP; 3.40A {Mus musculus} Back     alignment and structure
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A Back     alignment and structure
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1 Back     alignment and structure
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens} Back     alignment and structure
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens} Back     alignment and structure
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A Back     alignment and structure
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A Back     alignment and structure
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens} Back     alignment and structure
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 885
d1v9da_332 a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 3e-88
d1ux5a_411 a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces 9e-83
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 332 Back     information, alignment and structure

class: All alpha proteins
fold: Formin homology 2 domain (FH2 domain)
superfamily: Formin homology 2 domain (FH2 domain)
family: Formin homology 2 domain (FH2 domain)
domain: Diaphanous protein homolog 1, dia1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  281 bits (721), Expect = 3e-88
 Identities = 89/340 (26%), Positives = 153/340 (45%), Gaps = 31/340 (9%)

Query: 510 ENRVLDPKKSQNIAILLRALNVTRDEVSEALLDGNPESLGAELLETLVKMAPTKEEEIKL 569
           E +VLD K +QN++I L +  +   E+   +L+ N   L   +++ L+K  P  E+   L
Sbjct: 3   ELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKML 62

Query: 570 REYKGDILKLGSAERFLKAVLDIPFAFKRVEAMLYRANFDAEVKYLRKSYQTLEAASEEL 629
            E K +   L  +E+F   +  +P    R+ A+L++  F  +V+ ++    ++ AA EEL
Sbjct: 63  SELKEEYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEEL 122

Query: 630 KNSRLFLKLLEAVLKTGNRMNVGTNRGDAKAFKLDTLLKLVDIKGTDGKTTLLHFVVQEI 689
           + S  F  LLE  L  GN MN G+    A  F +  L KL D K  D K TLLHF+ +  
Sbjct: 123 RKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAELC 182

Query: 690 IRAEGAGTKSTEVNVESKNSMREDEFKKQGLEVVSGLSRDLSNVKKAAGMDSDVLSSYVM 749
                                            V     +L++V+KA+ + ++ L   + 
Sbjct: 183 ENDHPE---------------------------VLKFPDELAHVEKASRVSAENLQKSLD 215

Query: 750 KLEMGLEKVRLVLQY--EKPDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTE 807
           +++  +  V   +Q      D + KF   M  F+K+A+E+  +++       +L KE+ +
Sbjct: 216 QMKKQIADVERDVQNFPAATDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGD 275

Query: 808 YFHGNAAKEEAHPFRIFMIVRDFLAILDHVCKEVGKMQER 847
           YF  +  K     F  FM + +F  +     KE  K +E 
Sbjct: 276 YFVFDPKKLSVEEF--FMDLHNFRNMFLQAVKENQKRRET 313
>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 411 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query885
d1ux5a_411 Bni1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 100.0
d1v9da_332 Diaphanous protein homolog 1, dia1 {Mouse (Mus mus 100.0
>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Formin homology 2 domain (FH2 domain)
superfamily: Formin homology 2 domain (FH2 domain)
family: Formin homology 2 domain (FH2 domain)
domain: Bni1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.1e-65  Score=572.61  Aligned_cols=367  Identities=17%  Similarity=0.239  Sum_probs=323.4

Q ss_pred             CCCCccccccccccccccccCCceecccccccc------cCCHHHHHHhhccCCCCCCCCCCCCcCCCCCCccccccccC
Q 038630          442 DGAKPKLKALHWDKVRATSDRATVWDQLKSSSF------QLNEDMMESLFGCNSVNSVPKEPTTRKSVLPPVELENRVLD  515 (885)
Q Consensus       442 ~~pK~KlK~LhW~kV~~~~~k~TIW~~l~~~~~------~lD~d~LE~LF~~k~~~~~~K~~~~kk~v~~~~~k~isVLD  515 (885)
                      .+|+.|||+|||++|+..  .+|||+.+.+..+      .+|++.||++|+++.....    ..++   ....+.++|||
T Consensus         3 PkP~~klK~l~W~ki~~~--~~tiW~~i~~~~~~~~~~~~~~~~~le~~F~~k~~~~~----~~~~---~~~~~~~~lLd   73 (411)
T d1ux5a_           3 PRPHKKLKQLHWEKLDCT--DNSIWGTGKAEKFADDLYEKGVLADLEKAFAAREIKSL----ASKR---KEDLQKITFLS   73 (411)
T ss_dssp             CCCSSCBCCCCCCCCSSC--CSSSCCSSHHHHHHHHHHHTTHHHHHHHHTBSSCCHHH----HHHH---HHTTTSBCCSC
T ss_pred             CCCCCCCCCCCceeCCCC--CCCcchhcccccchhHHHhhhhHHHHHHHhccCCCCCC----cccc---cccccccccCc
Confidence            367889999999999764  6899999875432      4678899999998754321    1011   12345789999


Q ss_pred             hhhHHHHHHHhhhc-CCCHHHHHHHHHcCCCCCCCHHHHHH--------------HHhcCCCHHHHHHHHhhh------c
Q 038630          516 PKKSQNIAILLRAL-NVTRDEVSEALLDGNPESLGAELLET--------------LVKMAPTKEEEIKLREYK------G  574 (885)
Q Consensus       516 ~KRaqNIsI~L~kl-kls~eeI~~AIl~~D~~~L~~E~Le~--------------Llk~lPT~EEi~~Lk~~~------g  574 (885)
                      +||+|||+|+|++| +++.++|++||+.||.+.|+.+.+..              |.+++||.+|++.|++|.      |
T Consensus        74 ~kr~qni~I~L~~~~~~s~~~i~~ai~~~d~~~l~~~~l~~ll~~~~~~~~~~~~l~~~lPt~eE~~~l~~~~~~~~~~~  153 (411)
T d1ux5a_          74 RDISQQFGINLHMYSSLSVADLVKKILNCDRDFLQTPSVVEFLSKSEIIEVSVNLARNYAPYSTDWEGVRNLEDAKPPEK  153 (411)
T ss_dssp             HHHHHHHHHHTGGGTTSCHHHHHHHHHTTTHHHHTCHHHHHHTTCHHHHCCCHHHHHHTGGGCCCCTTCCCGGGCCCCSS
T ss_pred             HHHHHHHHHHHHHccCCCHHHHHHHHHhcChhhcCHHHHHHHHhhcchhhhHHHHHHHhCCCcHHHHHHHHHHhhccccC
Confidence            99999999999999 79999999999999999998888765              448999999999999996      6


Q ss_pred             CcCCCChHHHHHHHHhC--cccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhhccccccC
Q 038630          575 DILKLGSAERFLKAVLD--IPFAFKRVEAMLYRANFDAEVKYLRKSYQTLEAASEELKNSRLFLKLLEAVLKTGNRMNVG  652 (885)
Q Consensus       575 D~~~L~~aEqFl~~L~~--IP~l~~RL~allfk~~F~~~v~~l~~~l~~l~~A~~eLr~S~~L~~lL~~VLaiGN~LN~g  652 (885)
                      |.+.|+.+|||+++|+.  ||++.+||+||+|+.+|++.+++|.+.|+.+..||++|++|+.|+.||++||++|||||+|
T Consensus       154 d~~~L~~~Eqf~~~l~~~~i~~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~lN~g  233 (411)
T d1ux5a_         154 DPNDLQRADQIYLQLMVNLESYWGSRMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDT  233 (411)
T ss_dssp             CSTTBCHHHHHHHHTTTTTTTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSCG
T ss_pred             ChhhcCHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHhhhhcCC
Confidence            77999999999999974  8999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCceeeeeccchhcccccccCCCCccHHHHHHHHHHHHhCCCCCCccccccccCccchHHHHhhchhhhcccccchhh
Q 038630          653 TNRGDAKAFKLDTLLKLVDIKGTDGKTTLLHFVVQEIIRAEGAGTKSTEVNVESKNSMREDEFKKQGLEVVSGLSRDLSN  732 (885)
Q Consensus       653 t~rG~A~GFkLdSL~KL~dtKs~D~k~TLLhyLvq~Iir~e~~~L~~~n~~~~~~~~~~~E~~~k~gl~~V~~l~~EL~~  732 (885)
                      +  |+|+||+|++|.||.++|++|+++|||||||+.+.++.                           +.+.+|.+||.+
T Consensus       234 ~--~~A~GFkL~sL~kL~d~Ks~d~~~tLL~yiv~~~~~~~---------------------------p~l~~~~~el~~  284 (411)
T d1ux5a_         234 S--KQAQGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVRLNY---------------------------PSFNDFLSELEP  284 (411)
T ss_dssp             G--GCCSCCCGGGGGGSSSCBCTTSCSBHHHHHHHHHHHHC---------------------------GGGGGHHHHTHH
T ss_pred             C--CCcceeehHHHHHhhhccCCCCCeeHHHHHHHHHHHhC---------------------------cHhhccHHHHHH
Confidence            5  67999999999999999999999999999998776542                           235678899999


Q ss_pred             hhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC------CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038630          733 VKKAAGMDSDVLSSYVMKLEMGLEKVRLVLQYEKP------DMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVT  806 (885)
Q Consensus       733 V~kAAkvdld~L~~dv~kLe~gl~kv~~~Lq~~~~------~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~  806 (885)
                      |..|+++++++|.+++++|++++..++++++....      ...|+|..+|..|++.|+.++..|+..++++.+.|++++
T Consensus       285 v~~a~~~~~~~l~~~~~~L~~~l~~i~~~~~~~~~~~~~~~~~~d~f~~~~~~fl~~~~~~~~~l~~~~~~~~~~~~~~~  364 (411)
T d1ux5a_         285 VLDVVKVSIEQLVNDCKDFSQSIVNVERSVEIGNLSDSSKFHPLDKVLIKTLPVLPEARKKGDLLEDEVKLTIMEFESLM  364 (411)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHSTTTCTTSSCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999976541      235789999999999999999999999999999999999


Q ss_pred             HhccCCCccccCChhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 038630          807 EYFHGNAAKEEAHPFRIFMIVRDFLAILDHVCKEVGKMQER  847 (885)
Q Consensus       807 ~YFGEd~~k~e~~P~efF~il~dFl~~ldka~kE~~k~~er  847 (885)
                      .|||||++.. ..+++||++|.+|+..|++|++|+.+.+|+
T Consensus       365 ~yfGEd~~~~-~~~~~fF~~~~~F~~~~~~a~~en~~~~e~  404 (411)
T d1ux5a_         365 HTYGEDSGDK-FAKISFFKKFADFINEYKKAQAQNLAAEEE  404 (411)
T ss_dssp             HHTTCCSSCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999997642 468899999999999999999999886553
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure