Citrus Sinensis ID: 038633

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170------
Protein Sequence
CCYFVFALSDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN
Secondary Structure (PSIPRED)
cccccEEEccccccccEEEEEcccccccccccccccccccccEEEccccccEEEccccHHccccccEEEccccccccccccccccccccccEEEcccccccEEccccccccccccEEEcccccccccccccccccccccccEEEcccccccccccHHHHHHcccccccEEEccccc
Secondary Structure Prediction (SSPRO)
ccccHccccccccccccccccccccccccccccccccccEEEEEEcccccccccccHHHHccccccEEEccccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEccccccccccccHHHHHcccccEEEEccccccccccccHHHHHHcccccEEEEccccc
Coil and Loop (DISEMBL)
ccyfvfalSDLHLLSRIFALSLLRCCsvgsalaqpfrdsfdtyeddaghelggpispsllqlkdlkyldlsmnnfkgfkvpefIGSLKELRYLnlsgsffsgtipqslgnltnlLYLDLNnfldqsnqiglgwlsglpslkylnlggadlsKDAAYWLESISMLRSLVELRLPNCN
Flexible Loop (DISEMBL)
CCYFVFALSDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVelrlpncn
Low Complexity Region (SEG)
CCYFVFALSDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSllqlkdlkyldlSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSlgnltnllyldlnnflDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN
Disordered region (IsUnstruct)
*CYFVFALSDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELR*****
Disordered Region (DISOPRED)
CCYFVFALSDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN
Disordered Region (DISEMBL)
CCYFVFALSDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN
Disordered Region (DISPRO)
CCYFVFALSDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLP***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
CCYFVFALSDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	176	2.2.26 [Sep-21-2011]
Q9ZUI0	980	Putative leucine-rich rep	no	no	0.659	0.118	0.433	3e-11
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.647	0.100	0.401	2e-09
Q9LFS4	638	Protein NSP-INTERACTING K	no	no	0.409	0.112	0.479	7e-09
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.585	0.086	0.377	2e-08
C0LGW6	966	LRR receptor-like serine/	no	no	0.630	0.114	0.358	2e-08
P47735	999	Receptor-like protein kin	no	no	0.738	0.130	0.397	3e-08
C0LGT6	1031	LRR receptor-like serine/	no	no	0.562	0.096	0.411	4e-08
Q9FL28	1173	LRR receptor-like serine/	no	no	0.443	0.066	0.420	4e-08
Q94AG2	625	Somatic embryogenesis rec	no	no	0.397	0.112	0.450	5e-08
Q9SKG5	620	Somatic embryogenesis rec	no	no	0.448	0.127	0.45	1e-07

>sp|Q9ZUI0|Y2241_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 OS=Arabidopsis thaliana GN=At2g24130 PE=3 SV=1

 Score = 68.2 bits (165), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/120 (43%), Positives = 70/120 (58%), Gaps = 4/120 (3%)

Query: 37  RDSFDTYE-DDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKE-LRYLN 94
           ++S    E D +G +LGG ISPS+  L  L  LDLS N F G K+P  IGSL E L+ L+
Sbjct: 63  KESTQVIELDISGRDLGGEISPSIANLTGLTVLDLSRNFFVG-KIPPEIGSLHETLKQLS 121

Query: 95  LSGSFFSGTIPQSLGNLTNLLYLDL-NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKD 153
           LS +   G IPQ LG L  L+YLDL +N L+ S  + L       SL+Y++L    L+ +
Sbjct: 122 LSENLLHGNIPQELGLLNRLVYLDLGSNRLNGSIPVQLFCNGSSSSLQYIDLSNNSLTGE 181

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/117 (40%), Positives = 64/117 (54%), Gaps = 3/117 (2%)

Query: 49  HELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSL 108
           + L G     L+ L  L  LDLS N F G  VP  I +L  L +LNLSG+ FSG IP S+
Sbjct: 438 NNLNGSFPVELMALTSLSELDLSGNRFSG-AVPVSISNLSNLSFLNLSGNGFSGEIPASV 496

Query: 109 GNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLR 165
           GNL  L  LDL+   + S ++ +  LSGLP+++ + L G + S        S+  LR
Sbjct: 497 GNLFKLTALDLSK-QNMSGEVPV-ELSGLPNVQVIALQGNNFSGVVPEGFSSLVSLR 551

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LFS4|NIK1_ARATH Protein NSP-INTERACTING KINASE 1 OS=Arabidopsis thaliana GN=NIK1 PE=1 SV=1

 Score = 60.1 bits (144), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 49  HELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSL 108
             L G +SPS+  L +L+ + L  NN KG K+P  IG L  L  L+LS +FF G IP S+
Sbjct: 91  QNLSGTLSPSITNLTNLRIVLLQNNNIKG-KIPAEIGRLTRLETLDLSDNFFHGEIPFSV 149

Query: 109 GNLTNLLYLDLNN 121
           G L +L YL LNN
Sbjct: 150 GYLQSLQYLRLNN 162

Involved in defense response to geminivirus infection via regulation of the nuclear trafficking of RPL10A. Phosphorylates RPL10A in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 65/106 (61%), Gaps = 3/106 (2%)

Query: 49  HELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSL 108
           ++L GP+  SL  LK+L ++DLS NN  G ++   + ++++L  L +  + F+G IP  L
Sbjct: 686 NKLDGPVPASLGNLKELTHMDLSFNNLSG-ELSSELSTMEKLVGLYIEQNKFTGEIPSEL 744

Query: 109 GNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDA 154
           GNLT L YLD++  L  S +I    + GLP+L++LNL   +L  + 
Sbjct: 745 GNLTQLEYLDVSENL-LSGEIPTK-ICGLPNLEFLNLAKNNLRGEV 788

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGW6|ERL1_ARATH LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 65/117 (55%), Gaps = 6/117 (5%)

Query: 51  LGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGN 110
           LGG ISP++  L++L+ +DL  N   G ++P+ IG+   L YL+LS +   G IP S+  
Sbjct: 83  LGGEISPAIGDLRNLQSIDLQGNKLAG-QIPDEIGNCASLVYLDLSENLLYGDIPFSISK 141

Query: 111 LTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAA---YWLESISML 164
           L  L  L+L N  +Q        L+ +P+LK L+L G  L+ + +   YW E +  L
Sbjct: 142 LKQLETLNLKN--NQLTGPVPATLTQIPNLKRLDLAGNHLTGEISRLLYWNEVLQYL 196

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ER and ERL2.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P47735|RLK5_ARATH Receptor-like protein kinase 5 OS=Arabidopsis thaliana GN=RLK5 PE=1 SV=1

 Score = 58.2 bits (139), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/141 (39%), Positives = 72/141 (51%), Gaps = 11/141 (7%)

Query: 38  DSFDTYE-----DDAGHELGGPISPSL-LQLKDLKYLDLSMNNFKGFKVPEFIGSLKELR 91
           D FDT       D + + L G I  SL   L +LK+L++S NN     +P   G  ++L 
Sbjct: 108 DDFDTCHNLISLDLSENLLVGSIPKSLPFNLPNLKFLEISGNNLSD-TIPSSFGEFRKLE 166

Query: 92  YLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLS 151
            LNL+G+F SGTIP SLGN+T L  L L   L   +QI    L  L  L+ L L G +L 
Sbjct: 167 SLNLAGNFLSGTIPASLGNVTTLKELKLAYNLFSPSQIP-SQLGNLTELQVLWLAGCNL- 224

Query: 152 KDAAYWLESISMLRSLVELRL 172
                   S+S L SLV L L
Sbjct: 225 --VGPIPPSLSRLTSLVNLDL 243

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates that controls floral organ abscission. May interact with the 'INFLORESCENCE DEFICIENT IN ABSCISSION' (IDA) ligands family.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1

 Score = 57.8 bits (138), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 62/107 (57%), Gaps = 8/107 (7%)

Query: 47  AGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQ 106
            G +L G ISPS+  L  L+ L+L+ N+F G  +P+ +G L  L+YLN+S +   G IP 
Sbjct: 81  GGFKLTGVISPSIGNLSFLRLLNLADNSF-GSTIPQKVGRLFRLQYLNMSYNLLEGRIPS 139

Query: 107 SLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKD 153
           SL N + L  +DL+     SN +G G  S L SL  L +   DLSK+
Sbjct: 140 SLSNCSRLSTVDLS-----SNHLGHGVPSELGSLSKLAI--LDLSKN 179

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score = 57.8 bits (138), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 10/88 (11%)

Query: 45  DDAGH---------ELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNL 95
           D  GH         +L G +SP++  L  L+ LDL+ N+F G K+P  IG L EL  L L
Sbjct: 69  DSTGHVVSVSLLEKQLEGVLSPAIANLTYLQVLDLTSNSFTG-KIPAEIGKLTELNQLIL 127

Query: 96  SGSFFSGTIPQSLGNLTNLLYLDLNNFL 123
             ++FSG+IP  +  L N+ YLDL N L
Sbjct: 128 YLNYFSGSIPSGIWELKNIFYLDLRNNL 155

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q94AG2|SERK1_ARATH Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2

 Score = 57.0 bits (136), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 47/71 (66%), Gaps = 1/71 (1%)

Query: 51  LGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGN 110
           + GPI  +L  L +L  LDL +N+F G  +PE +G L +LR+L L+ +  +G+IP SL N
Sbjct: 105 ITGPIPSNLGNLTNLVSLDLYLNSFSG-PIPESLGKLSKLRFLRLNNNSLTGSIPMSLTN 163

Query: 111 LTNLLYLDLNN 121
           +T L  LDL+N
Sbjct: 164 ITTLQVLDLSN 174

Dual specificity kinase acting on both serine/threonine-and tyrosine-containing substrates. Phosphorylates BRI1 on 'Ser-887' and CDC48 on at least one threonine residue and on 'Ser-41'. Confers embryogenic competence. Acts redundantly with SERK2 as a control point for sporophytic development controlling male gametophyte production. Involved in the brassinolide signaling pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SKG5|SERK4_ARATH Somatic embryogenesis receptor kinase 4 OS=Arabidopsis thaliana GN=SERK4 PE=1 SV=2

 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 47/80 (58%), Gaps = 1/80 (1%)

Query: 42  TYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFS 101
           T  D    +L G + P L QL +L+YL+L  NN  G ++PE +G L EL  L+L  +  S
Sbjct: 78  TRVDLGNAKLSGKLVPELGQLLNLQYLELYSNNITG-EIPEELGDLVELVSLDLYANSIS 136

Query: 102 GTIPQSLGNLTNLLYLDLNN 121
           G IP SLG L  L +L LNN
Sbjct: 137 GPIPSSLGKLGKLRFLRLNN 156

Dual specificity kinase acting on both serine/threonine-and tyrosine-containing substrates. Positively regulates the BR-dependent plant growth pathway and negatively regulates the BR-independent cell-death pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
147789266	925	hypothetical protein VITISV_040339 [Viti	0.857	0.163	0.588	4e-40
359488583	958	PREDICTED: LRR receptor-like serine/thre	0.806	0.148	0.604	8e-40
359484185	990	PREDICTED: LRR receptor-like serine/thre	0.806	0.143	0.611	1e-39
296090228	896	unnamed protein product [Vitis vinifera]	0.738	0.145	0.625	8e-38
359488633	981	PREDICTED: LRR receptor-like serine/thre	0.738	0.132	0.633	1e-37
359488591	981	PREDICTED: probable leucine-rich repeat	0.738	0.132	0.625	1e-37
147822632	969	hypothetical protein VITISV_026260 [Viti	0.738	0.134	0.633	1e-37
225451409	1007	PREDICTED: leucine-rich repeat receptor	0.761	0.133	0.632	2e-34
359496717	1014	PREDICTED: brassinosteroid LRR receptor	0.761	0.132	0.625	9e-34
359496785	916	PREDICTED: leucine-rich repeat receptor	0.789	0.151	0.609	1e-33

>gi|147789266|emb|CAN71149.1| hypothetical protein VITISV_040339 [Vitis vinifera]

 Score =  169 bits (428), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 90/153 (58%), Positives = 111/153 (72%), Gaps = 2/153 (1%)

Query: 23  LRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPE 82
           L   S+   L  PF +S +   D    ELGG I+PSLL LK L YLDLSMNNF G ++P+
Sbjct: 12  LWTSSIKLKLGNPFPNSLEG--DGTASELGGEINPSLLSLKYLNYLDLSMNNFGGMEIPK 69

Query: 83  FIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKY 142
           FIGSL +LRYLNLSG+ F G IP ++ NL+NL YLDLN +  + N+ GL WLSGL SLKY
Sbjct: 70  FIGSLGKLRYLNLSGASFGGMIPPNIANLSNLRYLDLNTYSIEPNKNGLEWLSGLSSLKY 129

Query: 143 LNLGGADLSKDAAYWLESISMLRSLVELRLPNC 175
           LNLGG DLS+ AAYWL++I+ L SL+EL +PNC
Sbjct: 130 LNLGGIDLSEAAAYWLQTINTLPSLLELHMPNC 162

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488583|ref|XP_003633782.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera]

 Score =  168 bits (425), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 87/144 (60%), Positives = 109/144 (75%), Gaps = 2/144 (1%)

Query: 32  LAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELR 91
           L  PF +S +   D    ELGG I+PSLL LK L YLDLS NNF+G ++P+FIGSL++LR
Sbjct: 53  LGNPFPNSLEG--DRTASELGGEINPSLLSLKYLNYLDLSKNNFEGMEIPKFIGSLRKLR 110

Query: 92  YLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLS 151
           YLNLSG+ F G IP ++ NL+NL YLDLN +  + N+ GL WLSGL SLKYLNLGG DLS
Sbjct: 111 YLNLSGASFGGIIPPNIANLSNLRYLDLNTYSIEPNKNGLEWLSGLSSLKYLNLGGIDLS 170

Query: 152 KDAAYWLESISMLRSLVELRLPNC 175
           K AAYWL++++ L SL+EL +PNC
Sbjct: 171 KAAAYWLQTVNTLPSLLELHMPNC 194

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484185|ref|XP_002273824.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera]

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 88/144 (61%), Positives = 108/144 (75%), Gaps = 2/144 (1%)

Query: 32  LAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELR 91
           L  PF +S +   D    ELGG I+PSLL LK L YLDLSMNNF G ++P+FIGSL +LR
Sbjct: 86  LGNPFPNSLEG--DGTASELGGEINPSLLSLKYLNYLDLSMNNFGGMEIPKFIGSLGKLR 143

Query: 92  YLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLS 151
           YLNLSG+ F G IP ++ NL+NL YLDLN +  + N+ GL WLSGL SLKYLNLGG DLS
Sbjct: 144 YLNLSGASFGGMIPPNIANLSNLRYLDLNTYSIEPNKNGLEWLSGLSSLKYLNLGGIDLS 203

Query: 152 KDAAYWLESISMLRSLVELRLPNC 175
           + AAYWL++I+ L SL+EL +PNC
Sbjct: 204 EAAAYWLQTINTLPSLLELHMPNC 227

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090228|emb|CBI40047.3| unnamed protein product [Vitis vinifera]

 Score =  161 bits (408), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 82/131 (62%), Positives = 101/131 (77%)

Query: 45  DDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTI 104
           D    ELGG ISP+LL LK L YLDLSMNNF G  +PEFIGSL++LRYLNLSG+ F G I
Sbjct: 138 DGTEGELGGKISPALLDLKYLNYLDLSMNNFGGIPIPEFIGSLEKLRYLNLSGASFGGPI 197

Query: 105 PQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISML 164
           P  LGNL++L YLDL  + D+S+Q  L W+SGL SL++LNLGG DLS+ AAYWL+++S +
Sbjct: 198 PPQLGNLSSLHYLDLKEYFDESSQDDLHWISGLTSLRHLNLGGVDLSQAAAYWLQAVSKI 257

Query: 165 RSLVELRLPNC 175
            SL+EL LP C
Sbjct: 258 SSLLELHLPAC 268

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488633|ref|XP_002264905.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera]

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 83/131 (63%), Positives = 101/131 (77%)

Query: 45  DDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTI 104
           D    ELGG ISP+LL+LK L YLDLSMNNF G  +P+FIGSL++LRYLNLSG+ F G I
Sbjct: 95  DGTEGELGGKISPALLELKYLNYLDLSMNNFGGTPIPKFIGSLEKLRYLNLSGASFGGPI 154

Query: 105 PQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISML 164
           P  LGNL++L YLDL  + D+SNQ  L W+SGL SL++LNLGG DLS+ AAYWL+++S L
Sbjct: 155 PPQLGNLSSLHYLDLKEYFDESNQNDLHWISGLTSLRHLNLGGVDLSQAAAYWLQAVSKL 214

Query: 165 RSLVELRLPNC 175
            SL EL LP C
Sbjct: 215 PSLSELHLPAC 225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488591|ref|XP_003633783.1| PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Vitis vinifera]

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 82/131 (62%), Positives = 101/131 (77%)

Query: 45  DDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTI 104
           D    ELGG ISP+LL LK L YLDLSMNNF G  +PEFIGSL++LRYLNLSG+ F G I
Sbjct: 95  DGTEGELGGKISPALLDLKYLNYLDLSMNNFGGIPIPEFIGSLEKLRYLNLSGASFGGPI 154

Query: 105 PQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISML 164
           P  LGNL++L YLDL  + D+S+Q  L W+SGL SL++LNLGG DLS+ AAYWL+++S +
Sbjct: 155 PPQLGNLSSLHYLDLKEYFDESSQDDLHWISGLTSLRHLNLGGVDLSQAAAYWLQAVSKI 214

Query: 165 RSLVELRLPNC 175
            SL+EL LP C
Sbjct: 215 SSLLELHLPAC 225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147822632|emb|CAN75075.1| hypothetical protein VITISV_026260 [Vitis vinifera]

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 83/131 (63%), Positives = 101/131 (77%)

Query: 45  DDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTI 104
           D    ELGG ISP+LL+LK L YLDLSMNNF G  +P+FIGSL++LRYLNLSG+ F G I
Sbjct: 95  DGTEGELGGKISPALLELKYLNYLDLSMNNFGGTPIPKFIGSLEKLRYLNLSGASFGGPI 154

Query: 105 PQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISML 164
           P  LGNL++L YLDL  + D+SNQ  L W+SGL SL++LNLGG DLS+ AAYWL+++S L
Sbjct: 155 PPQLGNLSSLHYLDLKEYFDESNQNDLHWISGLTSLRHLNLGGVDLSQAAAYWLQAVSKL 214

Query: 165 RSLVELRLPNC 175
            SL EL LP C
Sbjct: 215 PSLSELHLPAC 225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451409|ref|XP_002273126.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 86/136 (63%), Positives = 105/136 (77%), Gaps = 2/136 (1%)

Query: 42  TYEDD--AGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSF 99
            +EDD  A H  GG IS SLL LKDL+YLDLSMNNF+G ++P+FIGS K LRYLNLSG+ 
Sbjct: 106 AFEDDYGAAHAFGGEISHSLLDLKDLRYLDLSMNNFEGLQIPKFIGSFKRLRYLNLSGAS 165

Query: 100 FSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLE 159
           F GTIP  LGNL++LLYLDLN++  +S +  L WLSGL SL++LNLG  DLSK AAYW  
Sbjct: 166 FGGTIPPHLGNLSSLLYLDLNSYSLESVEDDLHWLSGLSSLRHLNLGNIDLSKAAAYWHR 225

Query: 160 SISMLRSLVELRLPNC 175
           +++ L SL+ELRLP C
Sbjct: 226 AVNSLSSLLELRLPRC 241

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496717|ref|XP_003635312.1| PREDICTED: brassinosteroid LRR receptor kinase-like [Vitis vinifera]

 Score =  148 bits (373), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 85/136 (62%), Positives = 104/136 (76%), Gaps = 2/136 (1%)

Query: 42  TYEDD--AGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSF 99
            +EDD  A H  GG IS SLL LKDL+YLDLSMNN +G ++P+FIGS K LRYLNLSG+ 
Sbjct: 106 AFEDDYGAAHAFGGEISHSLLDLKDLRYLDLSMNNLEGLQIPKFIGSFKRLRYLNLSGAS 165

Query: 100 FSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLE 159
           F GTIP  LGNL++LLYLDLN++  +S +  L WLSGL SL++LNLG  DLSK AAYW  
Sbjct: 166 FGGTIPPHLGNLSSLLYLDLNSYSLESVEDDLHWLSGLSSLRHLNLGNIDLSKAAAYWHR 225

Query: 160 SISMLRSLVELRLPNC 175
           +++ L SL+ELRLP C
Sbjct: 226 AVNSLSSLLELRLPRC 241

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496785|ref|XP_003635332.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 86/141 (60%), Positives = 104/141 (73%)

Query: 35  PFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLN 94
           P  D+  T +  A H  GG IS SLL LKDL+YLDLSMNNF G K+P+FIGS K LRYLN
Sbjct: 97  PDPDNEATDDYGAAHAFGGEISHSLLDLKDLRYLDLSMNNFGGLKIPKFIGSFKRLRYLN 156

Query: 95  LSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDA 154
           LSG+ F GTIP  LGNL++LLYLDLN++  +S +  L WLSGL SL++LNLG  D SK A
Sbjct: 157 LSGASFGGTIPPHLGNLSSLLYLDLNSYSLESVENDLHWLSGLSSLRHLNLGNIDFSKAA 216

Query: 155 AYWLESISMLRSLVELRLPNC 175
           AYW  +++ L SL+ELRLP C
Sbjct: 217 AYWHRAVNSLSSLLELRLPGC 237

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
TAIR|locus:2044767	905	AT2G34930 "AT2G34930" [Arabido	0.960	0.186	0.349	2.2e-13
TAIR|locus:2096349	860	RLP31 "receptor like protein 3	0.397	0.081	0.418	3.5e-05
TAIR|locus:2047525	980	AT2G24130 [Arabidopsis thalian	0.392	0.070	0.416	0.00017
TAIR|locus:2137296	811	RLP46 "receptor like protein 4	0.517	0.112	0.329	0.00055
TAIR|locus:2075631	1009	AT3G47090 [Arabidopsis thalian	0.676	0.117	0.312	0.00072

TAIR|locus:2044767 AT2G34930 "AT2G34930" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 2.2e-13, P = 2.2e-13
 Identities = 66/189 (34%), Positives = 82/189 (43%)

Query:     4 FVFALSDLHLLSRIFALSLLRCCSVGSALAQP---------FRD-SFDTYEDDAGH-ELG 52
             F  AL+DL   SR+F+ S   CC+    L             R+ S D   D+     L 
Sbjct:    44 FRAALTDLS--SRLFSWSGPDCCNWPGVLCDARTSHVVKIDLRNPSQDVRSDEYKRGSLR 101

Query:    53 GPISPSXXXXXXXXXXXXSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSXXXXX 112
             G I PS            S N+F   ++PEFIG +  LRYLNLS S FSG IP S     
Sbjct:   102 GKIHPSLTQLKFLSYLDLSSNDFNELEIPEFIGQIVSLRYLNLSSSSFSGEIPTSLGNLS 161

Query:   113 XXXXXXXXXXX-DQSNQIGLG-----WLSGLPS-LKYLNLGGADLSKDAAYWLESISMLR 165
                           S  + L      WLS L S LKYLN+G  +LS     WL+  S + 
Sbjct:   162 KLESLDLYAESFGDSGTLSLRASNLRWLSSLSSSLKYLNMGYVNLSGAGETWLQDFSRIS 221

Query:   166 SLVELRLPN 174
             +L EL L N
Sbjct:   222 ALKELHLFN 230

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0005618 "cell wall" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP;IMP

TAIR|locus:2096349 RLP31 "receptor like protein 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 3.5e-05, P = 3.5e-05
 Identities = 31/74 (41%), Positives = 39/74 (52%)

Query:    71 SMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSXXXXXXXXXXXXXXXXDQSNQI- 129
             S N F G  +PE IG LKELR+LNLS + F+G IPQS                  S QI 
Sbjct:   675 SGNRFSG-NIPESIGLLKELRHLNLSSNAFTGNIPQSLANLMKLEALDLSLN-QLSGQIP 732

Query:   130 -GLGWLSGLPSLKY 142
              GLG LS + ++ +
Sbjct:   733 QGLGSLSFMSTMNF 746

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2047525 AT2G24130 [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 0.00017, P = 0.00017
 Identities = 30/72 (41%), Positives = 38/72 (52%)

Query:    37 RDSFDTYE-DDAGHELGGPISPSXXXXXXXXXXXXSMNNFKGFKVPEFIGSLKE-LRYLN 94
             ++S    E D +G +LGG ISPS            S N F G K+P  IGSL E L+ L+
Sbjct:    63 KESTQVIELDISGRDLGGEISPSIANLTGLTVLDLSRNFFVG-KIPPEIGSLHETLKQLS 121

Query:    95 LSGSFFSGTIPQ 106
             LS +   G IPQ
Sbjct:   122 LSENLLHGNIPQ 133

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2137296 RLP46 "receptor like protein 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 0.00055, P = 0.00055
 Identities = 30/91 (32%), Positives = 36/91 (39%)

Query:    57 PSXXXXXXXXXXXXSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSXXXXXXXXX 116
             PS              NNF   K+P+ IG+L  L  L+LS +  SG IP S         
Sbjct:   219 PSSVSRLTKLKTIDLQNNFLSSKIPDDIGNLVNLSTLSLSMNKLSGGIPSSIHNLKNLET 278

Query:   117 XXXXXXXDQSNQIGLGWLSGLPSLKYLNLGG 147
                      S +I   WL GL  LK L L G
Sbjct:   279 LQLENNNGLSGEIPAAWLFGLQKLKVLRLEG 309

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2075631 AT3G47090 [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 0.00072, P = 0.00072
 Identities = 41/131 (31%), Positives = 59/131 (45%)

Query:    45 DDAGHELGGPISPSXXXXXXXXXXXXSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTI 104
             D  G +LGG ISPS            S N+F G  +P+ +G+L  L+YL +  ++  G I
Sbjct:    72 DLGGLQLGGVISPSIGNLSFLIYLDLSNNSFGG-TIPQEMGNLFRLKYLAVGFNYLEGEI 130

Query:   105 PQSXXXXXXXXXXXXXXXXDQSNQIGLGWLSGLPSLK---YLNLGGADLSKDAAYWLESI 161
             P S                  SN +G G  S L SL+   YL LG  DL      ++ ++
Sbjct:   131 PASLSNCSRLLYLDLF-----SNNLGDGVPSELGSLRKLLYLYLGLNDLKGKFPVFIRNL 185

Query:   162 SMLRSLVELRL 172
             +   SL+ L L
Sbjct:   186 T---SLIVLNL 193


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.139   0.429    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      176       148   0.00068  104 3  11 22  0.45    31
                                                     30  0.39    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  585 (62 KB)
  Total size of DFA:  139 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.01u 0.09s 12.10t   Elapsed:  00:00:00
  Total cpu time:  12.01u 0.09s 12.10t   Elapsed:  00:00:00
  Start:  Mon May 20 18:49:28 2013   End:  Mon May 20 18:49:28 2013

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	176
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-04

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.9 bits (140), Expect = 2e-10
 Identities = 38/95 (40%), Positives = 54/95 (56%), Gaps = 9/95 (9%)

Query: 47  AGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQ 106
           +G+ + G I PSL  +  L+ LDLS N+F G  +PE +G L  LR LNL+G+  SG +P 
Sbjct: 450 SGNSIRGNIPPSLGSITSLEVLDLSYNSFNG-SIPESLGQLTSLRILNLNGNSLSGRVPA 508

Query: 107 SLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLK 141
           +LG    LL+    NF D +       L G+P L+
Sbjct: 509 ALGGR--LLHRASFNFTDNAG------LCGIPGLR 535

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.4 bits (136), Expect = 7e-10
 Identities = 36/85 (42%), Positives = 49/85 (57%), Gaps = 5/85 (5%)

Query: 68  LDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLN-NFLDQS 126
           L L     +GF +P  I  L+ L+ +NLSG+   G IP SLG++T+L  LDL+ N  + S
Sbjct: 423 LGLDNQGLRGF-IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 127 NQIGLGWLSGLPSLKYLNLGGADLS 151
               LG L+   SL+ LNL G  LS
Sbjct: 482 IPESLGQLT---SLRILNLNGNSLS 503

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 56.8 bits (137), Expect = 7e-10
 Identities = 45/125 (36%), Positives = 68/125 (54%), Gaps = 8/125 (6%)

Query: 45  DDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSL-KELRYLNLSGSFFSGT 103
           D +G  + G IS ++ +L  ++ ++LS N   G  +P+ I +    LRYLNLS + F+G+
Sbjct: 75  DLSGKNISGKISSAIFRLPYIQTINLSNNQLSG-PIPDDIFTTSSSLRYLNLSNNNFTGS 133

Query: 104 IPQSLGNLTNLLYLDL-NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESIS 162
           IP+  G++ NL  LDL NN L       +G  S   SLK L+LGG  L       L +++
Sbjct: 134 IPR--GSIPNLETLDLSNNMLSGEIPNDIGSFS---SLKVLDLGGNVLVGKIPNSLTNLT 188

Query: 163 MLRSL 167
            L  L
Sbjct: 189 SLEFL 193

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 55.6 bits (134), Expect = 1e-09
 Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 51  LGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGN 110
           L G I   + +L+ L+ ++LS N+ +G  +P  +GS+  L  L+LS + F+G+IP+SLG 
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ 488

Query: 111 LTNLLYLDLN-NFL 123
           LT+L  L+LN N L
Sbjct: 489 LTSLRILNLNGNSL 502

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 55.2 bits (133), Expect = 2e-09
 Identities = 42/118 (35%), Positives = 60/118 (50%), Gaps = 11/118 (9%)

Query: 53  GPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLT 112
           G I    +    L+ LDLS N   G ++P  IGS   L+ L+L G+   G IP SL NLT
Sbjct: 132 GSIPRGSIPN--LETLDLSNNMLSG-EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLT 188

Query: 113 NLLYLDLNNFLDQSNQIGLGW---LSGLPSLKYLNLGGADLSKDAAYWLESISMLRSL 167
           +L +L L      SNQ+       L  + SLK++ LG  +LS +  Y +  ++ L  L
Sbjct: 189 SLEFLTL-----ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL 241

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 52.5 bits (126), Expect = 2e-08
 Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 47  AGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQ 106
           A ++L G I   L Q+K LK++ L  NN  G ++P  IG L  L +L+L  +  +G IP 
Sbjct: 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSG-EIPYEIGGLTSLNHLDLVYNNLTGPIPS 254

Query: 107 SLGNLTNLLYLDL 119
           SLGNL NL YL L
Sbjct: 255 SLGNLKNLQYLFL 267

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 51.8 bits (124), Expect = 4e-08
 Identities = 31/74 (41%), Positives = 42/74 (56%), Gaps = 2/74 (2%)

Query: 51  LGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGN 110
           L G I   +  L  L +LDL  NN  G  +P  +G+LK L+YL L  +  SG IP S+ +
Sbjct: 224 LSGEIPYEIGGLTSLNHLDLVYNNLTG-PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS 282

Query: 111 LTNLLYLDL-NNFL 123
           L  L+ LDL +N L
Sbjct: 283 LQKLISLDLSDNSL 296

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 50.2 bits (120), Expect = 1e-07
 Identities = 40/99 (40%), Positives = 49/99 (49%), Gaps = 7/99 (7%)

Query: 57  PSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLY 116
           P     K L+ LDLS N F G  VP  +GSL EL  L LS +  SG IP  L +   L+ 
Sbjct: 469 PDSFGSKRLENLDLSRNQFSG-AVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVS 527

Query: 117 LDL--NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKD 153
           LDL  N     S QI   + S +P L  L+L    LS +
Sbjct: 528 LDLSHNQL---SGQIPASF-SEMPVLSQLDLSQNQLSGE 562

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 50.2 bits (120), Expect = 1e-07
 Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 51  LGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGN 110
           L G I   ++QL++L+ L L  NNF G K+P  + SL  L+ L L  + FSG IP++LG 
Sbjct: 296 LSGEIPELVIQLQNLEILHLFSNNFTG-KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK 354

Query: 111 LTNLLYLDLN 120
             NL  LDL+
Sbjct: 355 HNNLTVLDLS 364

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 48.3 bits (115), Expect = 4e-07
 Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 3/76 (3%)

Query: 49  HELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSL 108
           ++L GPI PS+  L+ L  LDLS N+  G ++PE +  L+ L  L+L  + F+G IP +L
Sbjct: 270 NKLSGPIPPSIFSLQKLISLDLSDNSLSG-EIPELVIQLQNLEILHLFSNNFTGKIPVAL 328

Query: 109 GNLTNLLYLDL--NNF 122
            +L  L  L L  N F
Sbjct: 329 TSLPRLQVLQLWSNKF 344

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 48.3 bits (115), Expect = 5e-07
 Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 2/76 (2%)

Query: 45  DDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTI 104
           D + + L G I+     +  L+ L L+ N F G  +P+  GS K L  L+LS + FSG +
Sbjct: 434 DISNNNLQGRINSRKWDMPSLQMLSLARNKFFG-GLPDSFGS-KRLENLDLSRNQFSGAV 491

Query: 105 PQSLGNLTNLLYLDLN 120
           P+ LG+L+ L+ L L+
Sbjct: 492 PRKLGSLSELMQLKLS 507

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 1/75 (1%)

Query: 47  AGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQ 106
           + ++L G I   L   K L  LDLS N   G ++P     +  L  L+LS +  SG IP+
Sbjct: 507 SENKLSGEIPDELSSCKKLVSLDLSHNQLSG-QIPASFSEMPVLSQLDLSQNQLSGEIPK 565

Query: 107 SLGNLTNLLYLDLNN 121
           +LGN+ +L+ +++++
Sbjct: 566 NLGNVESLVQVNISH 580

Length = 968

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	176
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.82
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.82
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.77
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.71
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.71
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.6
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.55
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.52
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.48
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.48
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.46
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.44
PLN03150	623	hypothetical protein; Provisional	99.42
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.41
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.36
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.35
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.34
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.33
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.32
PLN03150	623	hypothetical protein; Provisional	99.3
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.28
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.24
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.22
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.22
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.19
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.17
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.13
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.1
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.09
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.08
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.04
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.03
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.02
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.01
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.98
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.94
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.89
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.82
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.8
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.74
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.71
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.68
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.6
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.58
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.52
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.5
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.44
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.41
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.41
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.35
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.29
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.24
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.23
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.17
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.16
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.16
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.09
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.93
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.89
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.88
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.75
PRK15386	426	type III secretion protein GogB; Provisional	97.74
PRK15386	426	type III secretion protein GogB; Provisional	97.66
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.55
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.45
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.37
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.39
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.39
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.34
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.33
KOG4341	483	consensus F-box protein containing LRR [General fu	96.25
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.85
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.74
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.33
KOG4341	483	consensus F-box protein containing LRR [General fu	94.77
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.98
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.96
smart00370	26	LRR Leucine-rich repeats, outliers.	93.96
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	93.5
KOG4308	478	consensus LRR-containing protein [Function unknown	92.95
KOG4308	478	consensus LRR-containing protein [Function unknown	91.76
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.5
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	87.71
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	86.64
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	84.22
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	82.14

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.82  E-value=4.6e-20  Score=154.97  Aligned_cols=109  Identities=30%  Similarity=0.352  Sum_probs=48.0

Q ss_pred             ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEE
Q 038633           14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYL   93 (176)
Q Consensus        14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L   93 (176)
                      +++|+.|++++|.+.+..+.....+.+|++|++++|.+.+..|..+.++++|++|++++|.+.+. .|..++.+++|++|
T Consensus       139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L  217 (968)
T PLN00113        139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQ-IPRELGQMKSLKWI  217 (968)
T ss_pred             cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCc-CChHHcCcCCccEE
Confidence            34444444444444443343344444444444444444444444444444444444444444433 44444444444444


Q ss_pred             EeecccCCCCcchhccCCCCCCEEEccCCc
Q 038633           94 NLSGSFFSGTIPQSLGNLTNLLYLDLNNFL  123 (176)
Q Consensus        94 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~  123 (176)
                      ++++|++.+..|..++.+++|++|++.+|.
T Consensus       218 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  247 (968)
T PLN00113        218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYNN  247 (968)
T ss_pred             ECcCCccCCcCChhHhcCCCCCEEECcCce
Confidence            444444443344444444444444444443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.82  E-value=1e-19  Score=152.96  Aligned_cols=113  Identities=34%  Similarity=0.360  Sum_probs=58.7

Q ss_pred             cccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCc
Q 038633           11 LHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKEL   90 (176)
Q Consensus        11 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L   90 (176)
                      +..+++|+.|++++|.+.+..+..+..+.+|++|++++|.+.+..|..+..+++|++|++++|.+.+. .|..++.+++|
T Consensus       160 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L  238 (968)
T PLN00113        160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE-IPYEIGGLTSL  238 (968)
T ss_pred             HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCc-CChhHhcCCCC
Confidence            44455555555555555554444445555555555555555555555555555555555555555443 45555555555


Q ss_pred             cEEEeecccCCCCcchhccCCCCCCEEEccCCcc
Q 038633           91 RYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLD  124 (176)
Q Consensus        91 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~  124 (176)
                      ++|++++|.+.+..|..++.+++|+.|++.+|.+
T Consensus       239 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  272 (968)
T PLN00113        239 NHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL  272 (968)
T ss_pred             CEEECcCceeccccChhHhCCCCCCEEECcCCee
Confidence            5555555554444444444444455554444443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.77  E-value=1.4e-20  Score=144.55  Aligned_cols=163  Identities=22%  Similarity=0.133  Sum_probs=100.0

Q ss_pred             cccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcC
Q 038633            9 SDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLK   88 (176)
Q Consensus         9 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~   88 (176)
                      ..+..+++++.|.+..|.|.+.-...|..+.++++|+|+.|+++..-...+.+++.|+.|++++|.+..+ -++.+...+
T Consensus       239 ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ri-h~d~Wsftq  317 (873)
T KOG4194|consen  239 LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRI-HIDSWSFTQ  317 (873)
T ss_pred             hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhee-ecchhhhcc
Confidence            3455566666666666666666666677777777777777777655555566777777777777777766 566666777


Q ss_pred             CccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcc-------------------------cccccccCCCCCccEE
Q 038633           89 ELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSN-------------------------QIGLGWLSGLPSLKYL  143 (176)
Q Consensus        89 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-------------------------~~~~~~~~~l~~L~~L  143 (176)
                      +|++|++++|+++.-.++.|..+..|+.|+++.|.+...                         .+....|.++++|+.|
T Consensus       318 kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL  397 (873)
T KOG4194|consen  318 KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL  397 (873)
T ss_pred             cceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence            777777777777643344455555555555555554211                         1122335556666666


Q ss_pred             eccCCCCCCchhhhHHHhhccccCcEeeCcCC
Q 038633          144 NLGGADLSKDAAYWLESISMLRSLVELRLPNC  175 (176)
Q Consensus       144 ~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n  175 (176)
                      ++.+|++...+..   ++.++++|++|+|.+|
T Consensus       398 ~l~gNqlk~I~kr---Afsgl~~LE~LdL~~N  426 (873)
T KOG4194|consen  398 RLTGNQLKSIPKR---AFSGLEALEHLDLGDN  426 (873)
T ss_pred             eecCceeeecchh---hhccCcccceecCCCC
Confidence            6666666544443   5555666666666665

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.71  E-value=1.5e-19  Score=120.01  Aligned_cols=157  Identities=21%  Similarity=0.197  Sum_probs=134.0

Q ss_pred             cccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcC
Q 038633            9 SDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLK   88 (176)
Q Consensus         9 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~   88 (176)
                      +.+-.+.+++.|.+++|.+.. +++....+.+|+.|++++|+++ +.|..+..+++|+.|+++.|.+.  ..|..|++++
T Consensus        27 ~gLf~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~--~lprgfgs~p  102 (264)
T KOG0617|consen   27 PGLFNMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN--ILPRGFGSFP  102 (264)
T ss_pred             ccccchhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh--cCccccCCCc
Confidence            344456778889999988765 4566788899999999999995 78999999999999999999988  6899999999


Q ss_pred             CccEEEeecccCC-CCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccC
Q 038633           89 ELRYLNLSGSFFS-GTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSL  167 (176)
Q Consensus        89 ~L~~L~l~~~~~~-~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L  167 (176)
                      -|+.||+.+|.+. ..+|..|..+..|+.|.++.|.++..+-+   ++.+++|++|.+..|.+...+.    .++.++.|
T Consensus       103 ~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~d---vg~lt~lqil~lrdndll~lpk----eig~lt~l  175 (264)
T KOG0617|consen  103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPD---VGKLTNLQILSLRDNDLLSLPK----EIGDLTRL  175 (264)
T ss_pred             hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChh---hhhhcceeEEeeccCchhhCcH----HHHHHHHH
Confidence            9999999999885 36888888999999999999998655443   7899999999999999986654    77888999


Q ss_pred             cEeeCcCCC
Q 038633          168 VELRLPNCN  176 (176)
Q Consensus       168 ~~L~l~~n~  176 (176)
                      ++|++.+|.
T Consensus       176 relhiqgnr  184 (264)
T KOG0617|consen  176 RELHIQGNR  184 (264)
T ss_pred             HHHhcccce
Confidence            999999884

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.71  E-value=5.6e-18  Score=130.46  Aligned_cols=163  Identities=21%  Similarity=0.158  Sum_probs=98.4

Q ss_pred             cccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcC
Q 038633            9 SDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLK   88 (176)
Q Consensus         9 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~   88 (176)
                      ..+...+.++.|||+.|.|.+.....+..-.++++|+|++|.|+......|..+.+|..|.++.|.++.. .+..|+.++
T Consensus       143 e~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL-p~r~Fk~L~  221 (873)
T KOG4194|consen  143 EELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL-PQRSFKRLP  221 (873)
T ss_pred             HHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccccc-CHHHhhhcc
Confidence            3455566777777777777776666666667777777777777766666777777777777777777733 334455577


Q ss_pred             CccEEEeecccCCCCcchhccCCCCCCEEEccCCccCc----------------------ccccccccCCCCCccEEecc
Q 038633           89 ELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQS----------------------NQIGLGWLSGLPSLKYLNLG  146 (176)
Q Consensus        89 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~----------------------~~~~~~~~~~l~~L~~L~l~  146 (176)
                      .|+.|++..|++...---.|.++++|+.+.+..|.+..                      .....+++.+++.|+.|+++
T Consensus       222 ~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS  301 (873)
T KOG4194|consen  222 KLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLS  301 (873)
T ss_pred             hhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccc
Confidence            77777777776642212334455555555555444411                      11222334455555555555


Q ss_pred             CCCCCCchhhhHHHhhccccCcEeeCcCC
Q 038633          147 GADLSKDAAYWLESISMLRSLVELRLPNC  175 (176)
Q Consensus       147 ~n~l~~~~~~~~~~l~~~~~L~~L~l~~n  175 (176)
                      .|.+.....+   .|+..++|++|+|+.|
T Consensus       302 ~NaI~rih~d---~WsftqkL~~LdLs~N  327 (873)
T KOG4194|consen  302 YNAIQRIHID---SWSFTQKLKELDLSSN  327 (873)
T ss_pred             hhhhheeecc---hhhhcccceeEecccc
Confidence            5555555444   5666666666666665

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.60  E-value=4.1e-17  Score=108.51  Aligned_cols=134  Identities=28%  Similarity=0.330  Sum_probs=118.3

Q ss_pred             CcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCC
Q 038633           34 QPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTN  113 (176)
Q Consensus        34 ~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~  113 (176)
                      ....+++++.|-++.|.++ .+|..+..+.+|+.|++.+|++.  +.|..+++++.|+.|++..|++. ..|..|+.++.
T Consensus        28 gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie--~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~  103 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE--ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPA  103 (264)
T ss_pred             cccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh--hcChhhhhchhhhheecchhhhh-cCccccCCCch
Confidence            4466778889999999996 67888999999999999999999  79999999999999999999997 89999999999


Q ss_pred             CCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633          114 LLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN  176 (176)
Q Consensus       114 L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~  176 (176)
                      |+.||+.+|.+... ..++.|..+..|+.|++++|.+.-.++    .++.+++|+.|.+++|.
T Consensus       104 levldltynnl~e~-~lpgnff~m~tlralyl~dndfe~lp~----dvg~lt~lqil~lrdnd  161 (264)
T KOG0617|consen  104 LEVLDLTYNNLNEN-SLPGNFFYMTTLRALYLGDNDFEILPP----DVGKLTNLQILSLRDND  161 (264)
T ss_pred             hhhhhccccccccc-cCCcchhHHHHHHHHHhcCCCcccCCh----hhhhhcceeEEeeccCc
Confidence            99999999998432 334457888999999999999986655    78999999999999884

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.55  E-value=9.7e-16  Score=119.60  Aligned_cols=158  Identities=23%  Similarity=0.224  Sum_probs=121.3

Q ss_pred             cccccccceeeccCcccc-CCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhh-hcCcC
Q 038633           11 LHLLSRIFALSLLRCCSV-GSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEF-IGSLK   88 (176)
Q Consensus        11 ~~~~~~l~~l~l~~~~~~-~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~-~~~l~   88 (176)
                      +..++.|+.+.+..|++. ..+|...+++..|+.||++.|++. +.|..+-+-.++-.|++++|+|.  ++|.. +-.++
T Consensus        74 Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie--tIPn~lfinLt  150 (1255)
T KOG0444|consen   74 LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE--TIPNSLFINLT  150 (1255)
T ss_pred             hccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc--cCCchHHHhhH
Confidence            344567777777777764 466777888899999999999984 78988888899999999999998  67765 44788


Q ss_pred             CccEEEeecccCCCCcchhccCCCCCCEEEccCCccC-----------------------cccccccccCCCCCccEEec
Q 038633           89 ELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQ-----------------------SNQIGLGWLSGLPSLKYLNL  145 (176)
Q Consensus        89 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~-----------------------~~~~~~~~~~~l~~L~~L~l  145 (176)
                      .|-+||+++|++. .+|+.+..+..|++|.+++|++.                       +....+..+..+.+|+.+|+
T Consensus       151 DLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDl  229 (1255)
T KOG0444|consen  151 DLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDL  229 (1255)
T ss_pred             hHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccc
Confidence            8999999999987 88888888889999999998871                       01122334566677788888


Q ss_pred             cCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633          146 GGADLSKDAAYWLESISMLRSLVELRLPNCN  176 (176)
Q Consensus       146 ~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~  176 (176)
                      +.|.+. ..|+   .+..+++|+.|+|++|+
T Consensus       230 S~N~Lp-~vPe---cly~l~~LrrLNLS~N~  256 (1255)
T KOG0444|consen  230 SENNLP-IVPE---CLYKLRNLRRLNLSGNK  256 (1255)
T ss_pred             cccCCC-cchH---HHhhhhhhheeccCcCc
Confidence            888775 4444   66778888888888874

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.52  E-value=6.6e-16  Score=120.51  Aligned_cols=152  Identities=23%  Similarity=0.230  Sum_probs=86.5

Q ss_pred             cccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCC----------------
Q 038633           15 SRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGF----------------   78 (176)
Q Consensus        15 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~----------------   78 (176)
                      ++..+|++++|+|..+..+.+.++..|-+||++.|++. .+|+.++++..|++|++++|.+.-.                
T Consensus       126 Kn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhm  204 (1255)
T KOG0444|consen  126 KNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHM  204 (1255)
T ss_pred             cCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhc
Confidence            45566677776666665555666666667777777773 5666667777777777777755421                


Q ss_pred             --------cchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCC
Q 038633           79 --------KVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADL  150 (176)
Q Consensus        79 --------~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l  150 (176)
                              .+|.++-.+.+|..+|++.|.+. ..|+.++.+++|+.|++++|+++........|   .+|++|+|+.|++
T Consensus       205 s~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W---~~lEtLNlSrNQL  280 (1255)
T KOG0444|consen  205 SNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEW---ENLETLNLSRNQL  280 (1255)
T ss_pred             ccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHH---hhhhhhccccchh
Confidence                    14444444555555555555554 55666666666666666666664333322222   2355566666665


Q ss_pred             CCchhhhHHHhhccccCcEeeCcCC
Q 038633          151 SKDAAYWLESISMLRSLVELRLPNC  175 (176)
Q Consensus       151 ~~~~~~~~~~l~~~~~L~~L~l~~n  175 (176)
                      +..|.    .+.+++.|+.|.+.+|
T Consensus       281 t~LP~----avcKL~kL~kLy~n~N  301 (1255)
T KOG0444|consen  281 TVLPD----AVCKLTKLTKLYANNN  301 (1255)
T ss_pred             ccchH----HHhhhHHHHHHHhccC
Confidence            53332    4444555555554444

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.48  E-value=2.9e-14  Score=106.15  Aligned_cols=15  Identities=13%  Similarity=-0.124  Sum_probs=7.2

Q ss_pred             ccccceeeccCcccc
Q 038633           14 LSRIFALSLLRCCSV   28 (176)
Q Consensus        14 ~~~l~~l~l~~~~~~   28 (176)
                      +++++.|++++|.+.
T Consensus        80 ~~~L~~L~l~~~~~~   94 (319)
T cd00116          80 GCGLQELDLSDNALG   94 (319)
T ss_pred             cCceeEEEccCCCCC
Confidence            344555555554443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.48  E-value=2.9e-15  Score=111.20  Aligned_cols=122  Identities=29%  Similarity=0.326  Sum_probs=88.5

Q ss_pred             ecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEccCCcc
Q 038633           45 DDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLD  124 (176)
Q Consensus        45 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~  124 (176)
                      .++.|.+ +.+|..++.+++|..|++++|.+.  .+|..++.+..||.++++.|++- ..|+.++.+..++.+-.+.|.+
T Consensus       418 ~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln--~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi  493 (565)
T KOG0472|consen  418 VLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN--DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQI  493 (565)
T ss_pred             HhhcCcc-ccchHHHHhhhcceeeecccchhh--hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccc
Confidence            3343433 345666677788888888888777  57777777777888888888775 7777777777777776666766


Q ss_pred             CcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633          125 QSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN  176 (176)
Q Consensus       125 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~  176 (176)
                      .  ..+...+.+|.+|.+||+..|.+...||    .++.|++|++|.+++|.
T Consensus       494 ~--~vd~~~l~nm~nL~tLDL~nNdlq~IPp----~LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  494 G--SVDPSGLKNMRNLTTLDLQNNDLQQIPP----ILGNMTNLRHLELDGNP  539 (565)
T ss_pred             c--ccChHHhhhhhhcceeccCCCchhhCCh----hhccccceeEEEecCCc
Confidence            3  2333346788888888888888886655    78888888888888873

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.46  E-value=9.1e-14  Score=94.35  Aligned_cols=125  Identities=33%  Similarity=0.315  Sum_probs=36.2

Q ss_pred             cceEeecCCCCccccchhhhc-CCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhc-cCCCCCCEE
Q 038633           40 FDTYEDDAGHELGGPISPSLL-QLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSL-GNLTNLLYL  117 (176)
Q Consensus        40 ~l~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~-~~l~~L~~L  117 (176)
                      .+++|++.+|.|+.. . .+. .+.+|+.|++++|.+..  + +.+..+++|++|++++|++. .+++.+ ..+++|+.|
T Consensus        20 ~~~~L~L~~n~I~~I-e-~L~~~l~~L~~L~Ls~N~I~~--l-~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   20 KLRELNLRGNQISTI-E-NLGATLDKLEVLDLSNNQITK--L-EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQEL   93 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S-----TT----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred             ccccccccccccccc-c-chhhhhcCCCEEECCCCCCcc--c-cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEE
Confidence            455566666665432 1 222 35566666666666662  2 23445566666666666665 333322 245666666


Q ss_pred             EccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEee
Q 038633          118 DLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELR  171 (176)
Q Consensus       118 ~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~  171 (176)
                      ++++|++..... ...+..+++|++|++.+|.+.....--.-.+..+|+|+.||
T Consensus        94 ~L~~N~I~~l~~-l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   94 YLSNNKISDLNE-LEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             E-TTS---SCCC-CGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             ECcCCcCCChHH-hHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence            666666633222 22345566666666666666543221112345566666655

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.44  E-value=1e-13  Score=103.14  Aligned_cols=164  Identities=21%  Similarity=0.121  Sum_probs=101.3

Q ss_pred             ccccccceeeccCccccC------CCCcCcccCCcceEeecCCCCccccchhhhcCCCC---CcEEEccCccccCCc---
Q 038633           12 HLLSRIFALSLLRCCSVG------SALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKD---LKYLDLSMNNFKGFK---   79 (176)
Q Consensus        12 ~~~~~l~~l~l~~~~~~~------~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~---L~~L~l~~~~~~~~~---   79 (176)
                      ...++++.+++.++.+..      ..+.....+.++++|++++|.+.+..+..+..+..   |++|++++|.+....   
T Consensus        48 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~  127 (319)
T cd00116          48 RPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRL  127 (319)
T ss_pred             hhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHH
Confidence            345567888888776642      11123445678888888888887666666655555   888888888776320   


Q ss_pred             chhhhcCc-CCccEEEeecccCCCC----cchhccCCCCCCEEEccCCccCccc--ccccccCCCCCccEEeccCCCCCC
Q 038633           80 VPEFIGSL-KELRYLNLSGSFFSGT----IPQSLGNLTNLLYLDLNNFLDQSNQ--IGLGWLSGLPSLKYLNLGGADLSK  152 (176)
Q Consensus        80 ~p~~~~~l-~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~l~~L~~L~l~~n~l~~  152 (176)
                      +...+..+ ++|+.|++++|.+.+.    .+..+..++.|+.|++++|.++...  .....+..+++|++|++++|.+.+
T Consensus       128 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~  207 (319)
T cd00116         128 LAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTD  207 (319)
T ss_pred             HHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccCh
Confidence            22344455 7788888888887632    2334455667888888777764211  111223445677777777777764


Q ss_pred             chhh-hHHHhhccccCcEeeCcCC
Q 038633          153 DAAY-WLESISMLRSLVELRLPNC  175 (176)
Q Consensus       153 ~~~~-~~~~l~~~~~L~~L~l~~n  175 (176)
                      .... +...+..+++|++|++++|
T Consensus       208 ~~~~~l~~~~~~~~~L~~L~ls~n  231 (319)
T cd00116         208 EGASALAETLASLKSLEVLNLGDN  231 (319)
T ss_pred             HHHHHHHHHhcccCCCCEEecCCC
Confidence            4332 2234455677777777776

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03150 hypothetical protein; Provisional

Probab=99.42  E-value=6.9e-13  Score=106.88  Aligned_cols=106  Identities=31%  Similarity=0.411  Sum_probs=60.0

Q ss_pred             cceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEee
Q 038633           17 IFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLS   96 (176)
Q Consensus        17 l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~   96 (176)
                      ++.|+|+++.+.+..+.....+.+|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+. +|..++.+++|++|+++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEECc
Confidence            55555665555555555555555566666666666555555555666666666666665554 55555556666666666


Q ss_pred             cccCCCCcchhccCC-CCCCEEEccCCc
Q 038633           97 GSFFSGTIPQSLGNL-TNLLYLDLNNFL  123 (176)
Q Consensus        97 ~~~~~~~~p~~~~~l-~~L~~L~l~~n~  123 (176)
                      +|++.+.+|..++.. ..+..+++.+|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCc
Confidence            666555555554432 234455555554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.41  E-value=1e-14  Score=107.97  Aligned_cols=63  Identities=11%  Similarity=-0.129  Sum_probs=42.9

Q ss_pred             ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccC-cccc
Q 038633           14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSM-NNFK   76 (176)
Q Consensus        14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-~~~~   76 (176)
                      ....+.++|+.|.|....+..|..+.+|+.|||+.|.|+.+.|++|.++.++.+|-+-+ |+|+
T Consensus        66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~  129 (498)
T KOG4237|consen   66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT  129 (498)
T ss_pred             CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence            34566677777777777777777777777777777777777777777776666654433 5555

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.36  E-value=6.6e-13  Score=90.15  Aligned_cols=132  Identities=23%  Similarity=0.117  Sum_probs=52.7

Q ss_pred             ccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhh-cCcC
Q 038633           10 DLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFI-GSLK   88 (176)
Q Consensus        10 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~-~~l~   88 (176)
                      .+..+..++.|++.++.|..... ....+.+++.|++++|.++..  ..+..++.|++|++++|.++.  +++.+ ..++
T Consensus        14 ~~~n~~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~--i~~~l~~~lp   88 (175)
T PF14580_consen   14 QYNNPVKLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS--ISEGLDKNLP   88 (175)
T ss_dssp             ----------------------S---TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S---CHHHHHH-T
T ss_pred             ccccccccccccccccccccccc-hhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc--cccchHHhCC
Confidence            34455678999999999977532 223567899999999999753  347789999999999999994  44444 4689


Q ss_pred             CccEEEeecccCCCC-cchhccCCCCCCEEEccCCccCcc-cccccccCCCCCccEEecc
Q 038633           89 ELRYLNLSGSFFSGT-IPQSLGNLTNLLYLDLNNFLDQSN-QIGLGWLSGLPSLKYLNLG  146 (176)
Q Consensus        89 ~L~~L~l~~~~~~~~-~p~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~l~~L~~L~l~  146 (176)
                      +|++|++++|++... .-..++.+++|+.|++.+|++... ..-...+..+++|+.||-.
T Consensus        89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            999999999999632 224577899999999999998322 2223346789999998643

>PLN03210 Resistant to P

Probab=99.35  E-value=1.5e-11  Score=105.31  Aligned_cols=83  Identities=23%  Similarity=0.307  Sum_probs=43.5

Q ss_pred             CccEEEeecccCCCCcchhccCCCCCCEEEccCCcc-Ccccccc-----------------cccCCCCCccEEeccCCCC
Q 038633           89 ELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLD-QSNQIGL-----------------GWLSGLPSLKYLNLGGADL  150 (176)
Q Consensus        89 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~-~~~~~~~-----------------~~~~~l~~L~~L~l~~n~l  150 (176)
                      +|+.|++++|.....+|..++.+++|+.|++.+|.. ...+...                 .......+|+.|++++|.+
T Consensus       779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i  858 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGI  858 (1153)
T ss_pred             cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCC
Confidence            455555555544445555555555566666555431 1111000                 0001124566777777777


Q ss_pred             CCchhhhHHHhhccccCcEeeCcCC
Q 038633          151 SKDAAYWLESISMLRSLVELRLPNC  175 (176)
Q Consensus       151 ~~~~~~~~~~l~~~~~L~~L~l~~n  175 (176)
                      ... |.   .++.+++|+.|++.+|
T Consensus       859 ~~i-P~---si~~l~~L~~L~L~~C  879 (1153)
T PLN03210        859 EEV-PW---WIEKFSNLSFLDMNGC  879 (1153)
T ss_pred             ccC-hH---HHhcCCCCCEEECCCC
Confidence            643 33   5667778888877775

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.34  E-value=1.7e-11  Score=105.05  Aligned_cols=104  Identities=20%  Similarity=0.095  Sum_probs=49.3

Q ss_pred             ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEE
Q 038633           14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYL   93 (176)
Q Consensus        14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L   93 (176)
                      ..+|+.|++.++.+... +.....+.+|+.|+++++.....+|. +..+++|++|++++|..... +|..+..+++|+.|
T Consensus       610 ~~~L~~L~L~~s~l~~L-~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~-lp~si~~L~~L~~L  686 (1153)
T PLN03210        610 PENLVKLQMQGSKLEKL-WDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVE-LPSSIQYLNKLEDL  686 (1153)
T ss_pred             ccCCcEEECcCcccccc-ccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccc-cchhhhccCCCCEE
Confidence            34566666666554332 22334455555555555432233332 44555555555555543332 55555555555555


Q ss_pred             EeecccCCCCcchhccCCCCCCEEEccC
Q 038633           94 NLSGSFFSGTIPQSLGNLTNLLYLDLNN  121 (176)
Q Consensus        94 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~  121 (176)
                      ++++|...+.+|..+ .+++|+.|++.+
T Consensus       687 ~L~~c~~L~~Lp~~i-~l~sL~~L~Lsg  713 (1153)
T PLN03210        687 DMSRCENLEILPTGI-NLKSLYRLNLSG  713 (1153)
T ss_pred             eCCCCCCcCccCCcC-CCCCCCEEeCCC
Confidence            555543333444332 334444444443

syringae 6; Provisional

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.33  E-value=1.2e-13  Score=111.38  Aligned_cols=126  Identities=31%  Similarity=0.303  Sum_probs=86.0

Q ss_pred             cceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcch-hhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEE
Q 038633           40 FDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVP-EFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLD  118 (176)
Q Consensus        40 ~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~  118 (176)
                      .|+.|.+.+|.+++..-+.+-++..|+.|+|++|.+.  .+| ..+.++..|++|++++|.++ .+|..+..++.|+.|.
T Consensus       360 ~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~--~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~  436 (1081)
T KOG0618|consen  360 ALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN--SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLR  436 (1081)
T ss_pred             HHHHHHHhcCcccccchhhhccccceeeeeecccccc--cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHh
Confidence            4556677777777776677777777777777777777  344 35667777777777777776 6677777777777777


Q ss_pred             ccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCC
Q 038633          119 LNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNC  175 (176)
Q Consensus       119 l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n  175 (176)
                      ..+|.+...+.    +..++.|+.+|++.|.+....-.   ....+++|++||++||
T Consensus       437 ahsN~l~~fPe----~~~l~qL~~lDlS~N~L~~~~l~---~~~p~p~LkyLdlSGN  486 (1081)
T KOG0618|consen  437 AHSNQLLSFPE----LAQLPQLKVLDLSCNNLSEVTLP---EALPSPNLKYLDLSGN  486 (1081)
T ss_pred             hcCCceeechh----hhhcCcceEEecccchhhhhhhh---hhCCCcccceeeccCC
Confidence            77777754443    56677777777777777644322   2222367777777776

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.32  E-value=1.5e-14  Score=107.44  Aligned_cols=154  Identities=23%  Similarity=0.192  Sum_probs=77.5

Q ss_pred             ccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCC
Q 038633           10 DLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKE   89 (176)
Q Consensus        10 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~   89 (176)
                      ++..+..+..++..+|++... |+....+..+..+++.+|.++...|..+ +++.|+.+|...|-+.  .+|+.++.|.+
T Consensus       132 ~i~~~~~l~dl~~~~N~i~sl-p~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~--tlP~~lg~l~~  207 (565)
T KOG0472|consen  132 SIGRLLDLEDLDATNNQISSL-PEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLE--TLPPELGGLES  207 (565)
T ss_pred             hHHHHhhhhhhhccccccccC-chHHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhhhh--cCChhhcchhh
Confidence            444555666666666555443 3444555555566666666643333333 3666666666666555  45666666666


Q ss_pred             ccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcE
Q 038633           90 LRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVE  169 (176)
Q Consensus        90 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~  169 (176)
                      |+-|++..|.+. .+| .|.++..|..+.++.|.+++.+.  ....+++++.+||+.+|++...|.    .+..+.+|+.
T Consensus       208 L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpa--e~~~~L~~l~vLDLRdNklke~Pd----e~clLrsL~r  279 (565)
T KOG0472|consen  208 LELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPA--EHLKHLNSLLVLDLRDNKLKEVPD----EICLLRSLER  279 (565)
T ss_pred             hHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHH--HHhcccccceeeeccccccccCch----HHHHhhhhhh
Confidence            666666666554 444 34444445555555554432222  113344455555555555443322    3333444445


Q ss_pred             eeCcCC
Q 038633          170 LRLPNC  175 (176)
Q Consensus       170 L~l~~n  175 (176)
                      ||+++|
T Consensus       280 LDlSNN  285 (565)
T KOG0472|consen  280 LDLSNN  285 (565)
T ss_pred             hcccCC
Confidence            554444

>PLN03150 hypothetical protein; Provisional

Probab=99.30  E-value=1.3e-11  Score=99.56  Aligned_cols=109  Identities=31%  Similarity=0.367  Sum_probs=90.5

Q ss_pred             cceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEc
Q 038633           40 FDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDL  119 (176)
Q Consensus        40 ~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l  119 (176)
                      .++.|+|++|.+.+.+|..+..+++|+.|++++|.+.+. +|..+..+++|+.|++++|++.+..|+.++.+++|+.|++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            477899999999999999999999999999999999887 9999999999999999999999889999999999999999


Q ss_pred             cCCccCcccccccccCC-CCCccEEeccCCCCC
Q 038633          120 NNFLDQSNQIGLGWLSG-LPSLKYLNLGGADLS  151 (176)
Q Consensus       120 ~~n~~~~~~~~~~~~~~-l~~L~~L~l~~n~l~  151 (176)
                      ++|.+.  ...+..+.. ..++..+++.+|...
T Consensus       498 s~N~l~--g~iP~~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        498 NGNSLS--GRVPAALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             cCCccc--ccCChHHhhccccCceEEecCCccc
Confidence            999883  233333333 235667888888643

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.28  E-value=6.3e-13  Score=107.33  Aligned_cols=136  Identities=21%  Similarity=0.188  Sum_probs=111.5

Q ss_pred             ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEE
Q 038633           14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYL   93 (176)
Q Consensus        14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L   93 (176)
                      ...|..|.+.+|.+....-+......+|+.|+|++|++...-...+.++..|++|+++||.++  .+|..+..+..|++|
T Consensus       358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~--~Lp~tva~~~~L~tL  435 (1081)
T KOG0618|consen  358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT--TLPDTVANLGRLHTL  435 (1081)
T ss_pred             hHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh--hhhHHHHhhhhhHHH
Confidence            456778888899988877777888899999999999997655666889999999999999999  789999999999999


Q ss_pred             EeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchh
Q 038633           94 NLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAA  155 (176)
Q Consensus        94 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  155 (176)
                      ...+|++. ..| .+..++.|+.+|++.|.++......  -..-++|++||++||.-....-
T Consensus       436 ~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~--~~p~p~LkyLdlSGN~~l~~d~  493 (1081)
T KOG0618|consen  436 RAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPE--ALPSPNLKYLDLSGNTRLVFDH  493 (1081)
T ss_pred             hhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhh--hCCCcccceeeccCCcccccch
Confidence            99999997 888 6778999999999999985433221  1122799999999998433433

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.24  E-value=9.3e-13  Score=95.04  Aligned_cols=125  Identities=26%  Similarity=0.232  Sum_probs=75.6

Q ss_pred             cceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEc
Q 038633           40 FDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDL  119 (176)
Q Consensus        40 ~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l  119 (176)
                      .|+++|+++|.|+ .+..+..-.+.+++|+++.|.+..  + ..+..+++|++||+++|.++ .+-.+-..+.+.++|.+
T Consensus       285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~--v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT--V-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhccccccchh-hhhhhhhhccceeEEeccccceee--e-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence            4556677777664 445555556667777777776662  2 23556667777777776665 33333334556666666


Q ss_pred             cCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCC
Q 038633          120 NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNC  175 (176)
Q Consensus       120 ~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n  175 (176)
                      ++|.++....    +..+.+|..||+.+|++.....  +..++.+|-|+++.+.+|
T Consensus       360 a~N~iE~LSG----L~KLYSLvnLDl~~N~Ie~lde--V~~IG~LPCLE~l~L~~N  409 (490)
T KOG1259|consen  360 AQNKIETLSG----LRKLYSLVNLDLSSNQIEELDE--VNHIGNLPCLETLRLTGN  409 (490)
T ss_pred             hhhhHhhhhh----hHhhhhheeccccccchhhHHH--hcccccccHHHHHhhcCC
Confidence            6666643322    4566677777777777753322  346677777777777766

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.22  E-value=6.4e-11  Score=96.67  Aligned_cols=34  Identities=21%  Similarity=0.128  Sum_probs=23.0

Q ss_pred             CccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633          139 SLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN  176 (176)
Q Consensus       139 ~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~  176 (176)
                      +|+.|++++|++... |.   .+..++.|+.|++++|+
T Consensus       423 ~L~~L~Ls~NqLt~L-P~---sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        423 GLLSLSVYRNQLTRL-PE---SLIHLSSETTVNLEGNP  456 (788)
T ss_pred             hhhhhhhccCccccc-Ch---HHhhccCCCeEECCCCC
Confidence            455566666666533 33   56678888899998884

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.22  E-value=3.6e-11  Score=98.19  Aligned_cols=56  Identities=16%  Similarity=0.106  Sum_probs=26.6

Q ss_pred             cccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCcccc
Q 038633           15 SRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFK   76 (176)
Q Consensus        15 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~   76 (176)
                      +.++.|++++|.+.... ...  ..+|+.|++++|.++ .+|..+.  ..|+.|++++|.+.
T Consensus       199 ~~L~~L~Ls~N~LtsLP-~~l--~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~  254 (754)
T PRK15370        199 EQITTLILDNNELKSLP-ENL--QGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT  254 (754)
T ss_pred             cCCcEEEecCCCCCcCC-hhh--ccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC
Confidence            45666666666655432 211  134555555555554 2343321  23444444444444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.19  E-value=3.3e-11  Score=98.46  Aligned_cols=146  Identities=14%  Similarity=0.096  Sum_probs=81.4

Q ss_pred             cccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhc-------------------CCCCCcEEEccCccc
Q 038633           15 SRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLL-------------------QLKDLKYLDLSMNNF   75 (176)
Q Consensus        15 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~-------------------~l~~L~~L~l~~~~~   75 (176)
                      .+|+.|++++|.+.. .|...  ...|+.|++++|.++. +|..+.                   -.++|++|++++|.+
T Consensus       262 s~L~~L~Ls~N~L~~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~L  337 (754)
T PRK15370        262 SALQSLDLFHNKISC-LPENL--PEELRYLSVYDNSIRT-LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENAL  337 (754)
T ss_pred             CCCCEEECcCCccCc-ccccc--CCCCcEEECCCCcccc-CcccchhhHHHHHhcCCccccCCccccccceeccccCCcc
Confidence            467778888777764 23222  2367777777777753 332221                   123455666666655


Q ss_pred             cCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchh
Q 038633           76 KGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAA  155 (176)
Q Consensus        76 ~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  155 (176)
                      +  .+|..+.  ++|+.|++++|++. .+|..+  .++|+.|++++|.++..+..   +  ..+|+.|++++|++...+.
T Consensus       338 t--~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~LP~~---l--~~sL~~LdLs~N~L~~LP~  405 (754)
T PRK15370        338 T--SLPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNLPEN---L--PAALQIMQASRNNLVRLPE  405 (754)
T ss_pred             c--cCChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCCCHh---H--HHHHHHHhhccCCcccCch
Confidence            5  3444432  46666666666665 455443  24666777777666422211   1  1256667777777764443


Q ss_pred             hhHHHhhccccCcEeeCcCCC
Q 038633          156 YWLESISMLRSLVELRLPNCN  176 (176)
Q Consensus       156 ~~~~~l~~~~~L~~L~l~~n~  176 (176)
                      ..+...+..+.+..+++.+|.
T Consensus       406 sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        406 SLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             hHHHHhhcCCCccEEEeeCCC
Confidence            322233445777788887773

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.17  E-value=1.4e-12  Score=96.83  Aligned_cols=130  Identities=25%  Similarity=0.248  Sum_probs=107.6

Q ss_pred             CcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeec-ccCCCCcc-hhccCCCCCCE
Q 038633           39 SFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSG-SFFSGTIP-QSLGNLTNLLY  116 (176)
Q Consensus        39 ~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~-~~~~~~~p-~~~~~l~~L~~  116 (176)
                      ...++++|..|.|+..-+.+|..+.+|+.||++.|.|+.+ .|.+|.++.++..|.+.+ |+|+ .+| ..|+++.+++.
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I-~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqr  144 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFI-APDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQR  144 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchhhc-ChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHH
Confidence            4567889999999988889999999999999999999998 999999999988888776 8887 555 56889999999


Q ss_pred             EEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCC
Q 038633          117 LDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNC  175 (176)
Q Consensus       117 L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n  175 (176)
                      |.+.-|++  ......+++.++++..|.+.+|.+......   .+..+..++.+++..|
T Consensus       145 LllNan~i--~Cir~~al~dL~~l~lLslyDn~~q~i~~~---tf~~l~~i~tlhlA~n  198 (498)
T KOG4237|consen  145 LLLNANHI--NCIRQDALRDLPSLSLLSLYDNKIQSICKG---TFQGLAAIKTLHLAQN  198 (498)
T ss_pred             HhcChhhh--cchhHHHHHHhhhcchhcccchhhhhhccc---cccchhccchHhhhcC
Confidence            99988888  555556789999999999999988755443   5566777777777655

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.13  E-value=4.7e-10  Score=91.72  Aligned_cols=54  Identities=15%  Similarity=0.032  Sum_probs=27.6

Q ss_pred             cccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCcccc
Q 038633           15 SRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFK   76 (176)
Q Consensus        15 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~   76 (176)
                      ++++.|++.+|.+.... .   ...+|++|++++|.++. +|..   .++|+.|++++|.+.
T Consensus       222 ~~L~~L~L~~N~Lt~LP-~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~N~L~  275 (788)
T PRK15387        222 AHITTLVIPDNNLTSLP-A---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIFSNPLT  275 (788)
T ss_pred             cCCCEEEccCCcCCCCC-C---CCCCCcEEEecCCccCc-ccCc---ccccceeeccCCchh
Confidence            35666666666655421 1   23566667777766653 3321   234444444444444

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.10  E-value=8.3e-11  Score=66.38  Aligned_cols=58  Identities=33%  Similarity=0.391  Sum_probs=25.5

Q ss_pred             ceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeeccc
Q 038633           41 DTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSF   99 (176)
Q Consensus        41 l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~   99 (176)
                      |++|++++|.++...+..|.++++|++|++++|.+... .|..+..+++|++|++++|+
T Consensus         3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSSS
T ss_pred             CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCCc
Confidence            44444444444433333444444444444444444432 33344444444444444443

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.09  E-value=1.8e-11  Score=88.44  Aligned_cols=138  Identities=19%  Similarity=0.134  Sum_probs=109.7

Q ss_pred             cccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcC
Q 038633            9 SDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLK   88 (176)
Q Consensus         9 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~   88 (176)
                      .......-++++|+++|.|... .+.....+.++.|+++.|.+... . .+..+++|+.||+++|.++  .+...-..+.
T Consensus       278 ~~~dTWq~LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~i~~v-~-nLa~L~~L~~LDLS~N~Ls--~~~Gwh~KLG  352 (490)
T KOG1259|consen  278 VSADTWQELTELDLSGNLITQI-DESVKLAPKLRRLILSQNRIRTV-Q-NLAELPQLQLLDLSGNLLA--ECVGWHLKLG  352 (490)
T ss_pred             EecchHhhhhhccccccchhhh-hhhhhhccceeEEeccccceeee-h-hhhhcccceEeecccchhH--hhhhhHhhhc
Confidence            3444567789999999988653 45566778899999999999643 3 3888999999999999988  4555545788


Q ss_pred             CccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCch
Q 038633           89 ELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDA  154 (176)
Q Consensus        89 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  154 (176)
                      +++.|.+++|.+.  ....++.+-+|..||+.+|+++.... .+.++.++.|+++.|.+|.+.+.+
T Consensus       353 NIKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~lde-V~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  353 NIKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDE-VNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             CEeeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHH-hcccccccHHHHHhhcCCCccccc
Confidence            9999999999995  34457788899999999999964433 345889999999999999998664

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.08  E-value=9.8e-11  Score=66.07  Aligned_cols=59  Identities=37%  Similarity=0.542  Sum_probs=30.8

Q ss_pred             CCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEccCCc
Q 038633           64 DLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFL  123 (176)
Q Consensus        64 ~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~  123 (176)
                      +|++|++++|.+... .+..+..+++|++|++++|.+....|..|.++++|+++++++|+
T Consensus         2 ~L~~L~l~~n~l~~i-~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEI-PPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEE-CTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCcc-CHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            455555555555532 33345555555555555555553333445555555555555554

...

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.04  E-value=6e-12  Score=97.30  Aligned_cols=99  Identities=28%  Similarity=0.331  Sum_probs=46.5

Q ss_pred             cceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEee
Q 038633           17 IFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLS   96 (176)
Q Consensus        17 l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~   96 (176)
                      |..+.+..|++... ++....+..+++++++.|+++ ..|..++.++ |+.|-+++|+++  .+|+.++..+.|.+||.+
T Consensus       100 Le~liLy~n~~r~i-p~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~--~lp~~ig~~~tl~~ld~s  174 (722)
T KOG0532|consen  100 LESLILYHNCIRTI-PEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT--SLPEEIGLLPTLAHLDVS  174 (722)
T ss_pred             HHHHHHHhccceec-chhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc--cCCcccccchhHHHhhhh
Confidence            33444444333322 233344445555555555553 4455555444 555555555555  345555555555555555


Q ss_pred             cccCCCCcchhccCCCCCCEEEccC
Q 038633           97 GSFFSGTIPQSLGNLTNLLYLDLNN  121 (176)
Q Consensus        97 ~~~~~~~~p~~~~~l~~L~~L~l~~  121 (176)
                      .|.+. .+|..++++.+|+.+++..
T Consensus       175 ~nei~-slpsql~~l~slr~l~vrR  198 (722)
T KOG0532|consen  175 KNEIQ-SLPSQLGYLTSLRDLNVRR  198 (722)
T ss_pred             hhhhh-hchHHhhhHHHHHHHHHhh
Confidence            55554 3344444443333333333

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.03  E-value=2.2e-10  Score=87.99  Aligned_cols=148  Identities=26%  Similarity=0.292  Sum_probs=87.0

Q ss_pred             cccceeeccCccccCCCCcCcccC-CcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEE
Q 038633           15 SRIFALSLLRCCSVGSALAQPFRD-SFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYL   93 (176)
Q Consensus        15 ~~l~~l~l~~~~~~~~~~~~~~~~-~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L   93 (176)
                      ..+..+++.++.+....+. .... .+++.|++++|.+. .+|..+..+++|+.|++++|.+.  .+|......+.|+.|
T Consensus       116 ~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~--~l~~~~~~~~~L~~L  191 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS--DLPKLLSNLSNLNNL  191 (394)
T ss_pred             cceeEEecCCcccccCccc-cccchhhcccccccccchh-hhhhhhhccccccccccCCchhh--hhhhhhhhhhhhhhe
Confidence            4566666666666554322 2222 26667777777664 34445566677777777777666  445444455666666


Q ss_pred             EeecccCCCCcchhccCCCCCCEEEccCC-----------------------ccCcccccccccCCCCCccEEeccCCCC
Q 038633           94 NLSGSFFSGTIPQSLGNLTNLLYLDLNNF-----------------------LDQSNQIGLGWLSGLPSLKYLNLGGADL  150 (176)
Q Consensus        94 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~n-----------------------~~~~~~~~~~~~~~l~~L~~L~l~~n~l  150 (176)
                      ++++|++. .+|........|+.+.+++|                       ++...   ...+..+++++.|++++|.+
T Consensus       192 ~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~---~~~~~~l~~l~~L~~s~n~i  267 (394)
T COG4886         192 DLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDL---PESIGNLSNLETLDLSNNQI  267 (394)
T ss_pred             eccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeec---cchhccccccceeccccccc
Confidence            66666665 44544333344555555555                       33111   12355667788888888887


Q ss_pred             CCchhhhHHHhhccccCcEeeCcCC
Q 038633          151 SKDAAYWLESISMLRSLVELRLPNC  175 (176)
Q Consensus       151 ~~~~~~~~~~l~~~~~L~~L~l~~n  175 (176)
                      ....     .++...++++|++++|
T Consensus       268 ~~i~-----~~~~~~~l~~L~~s~n  287 (394)
T COG4886         268 SSIS-----SLGSLTNLRELDLSGN  287 (394)
T ss_pred             cccc-----cccccCccCEEeccCc
Confidence            6443     2556678888888765

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=2.9e-11  Score=90.81  Aligned_cols=115  Identities=22%  Similarity=0.052  Sum_probs=60.0

Q ss_pred             ccccccccceeeccCccccCC--CCcCcccCCcceEeecCCCCccccchhhh-cCCCCCcEEEccCccccCCcchhhhcC
Q 038633           10 DLHLLSRIFALSLLRCCSVGS--ALAQPFRDSFDTYEDDAGHELGGPISPSL-LQLKDLKYLDLSMNNFKGFKVPEFIGS   86 (176)
Q Consensus        10 ~~~~~~~l~~l~l~~~~~~~~--~~~~~~~~~~l~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~p~~~~~   86 (176)
                      ....|++++.|+++.|.++..  +....-++++|+.|+++.|.+.-...... ..++.|+.|.++.|.++...+......
T Consensus       141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~  220 (505)
T KOG3207|consen  141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT  220 (505)
T ss_pred             hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence            345677888888887766543  23345566677777777776543222221 145666677777776664323333334


Q ss_pred             cCCccEEEeecccCCCCcchhccCCCCCCEEEccCCcc
Q 038633           87 LKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLD  124 (176)
Q Consensus        87 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~  124 (176)
                      +|+++.|++..|.....-.....-++.|+.|++++|.+
T Consensus       221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l  258 (505)
T KOG3207|consen  221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL  258 (505)
T ss_pred             CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc
Confidence            55555555555532111111111234455555555544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.01  E-value=2.7e-10  Score=87.42  Aligned_cols=107  Identities=31%  Similarity=0.324  Sum_probs=84.5

Q ss_pred             ccCCcceEeecCCCCccccchhhhcCCC-CCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCC
Q 038633           36 FRDSFDTYEDDAGHELGGPISPSLLQLK-DLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNL  114 (176)
Q Consensus        36 ~~~~~l~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L  114 (176)
                      .....++.|++.+|.++ .++.....+. +|+.|++++|.+.  .+|..+..++.|+.|++++|++. ..|...+..+.|
T Consensus       113 ~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~--~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L  188 (394)
T COG4886         113 LELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE--SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNL  188 (394)
T ss_pred             hcccceeEEecCCcccc-cCccccccchhhcccccccccchh--hhhhhhhccccccccccCCchhh-hhhhhhhhhhhh
Confidence            33467899999999996 5666666674 9999999999999  67788889999999999999998 777666688999


Q ss_pred             CEEEccCCccCcccccccccCCCCCccEEeccCCC
Q 038633          115 LYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGAD  149 (176)
Q Consensus       115 ~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~  149 (176)
                      +.+++++|+++..+..   ......|+++.+++|.
T Consensus       189 ~~L~ls~N~i~~l~~~---~~~~~~L~~l~~~~N~  220 (394)
T COG4886         189 NNLDLSGNKISDLPPE---IELLSALEELDLSNNS  220 (394)
T ss_pred             hheeccCCccccCchh---hhhhhhhhhhhhcCCc
Confidence            9999999998544331   1244457777777774

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.98  E-value=8.2e-11  Score=91.17  Aligned_cols=155  Identities=19%  Similarity=0.179  Sum_probs=120.5

Q ss_pred             cccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcC
Q 038633            9 SDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLK   88 (176)
Q Consensus         9 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~   88 (176)
                      ..+..+..++.++++.|.+......  .-.--|+.|-+++|+++ .+|..++....|..||.+.|.+.  .+|..++.+.
T Consensus       115 ~~i~~L~~lt~l~ls~NqlS~lp~~--lC~lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~--slpsql~~l~  189 (722)
T KOG0532|consen  115 EAICNLEALTFLDLSSNQLSHLPDG--LCDLPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ--SLPSQLGYLT  189 (722)
T ss_pred             hhhhhhhHHHHhhhccchhhcCChh--hhcCcceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh--hchHHhhhHH
Confidence            3455677888999998888655433  22334788999999995 78888888899999999999998  7899999999


Q ss_pred             CccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCc
Q 038633           89 ELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLV  168 (176)
Q Consensus        89 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~  168 (176)
                      +|+.|.+..|++. .+|+.+..++ |..||+++|++...+..   |++|+.|++|-|.+|.+...+.+ +..-+...-.+
T Consensus       190 slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis~iPv~---fr~m~~Lq~l~LenNPLqSPPAq-IC~kGkVHIFK  263 (722)
T KOG0532|consen  190 SLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKISYLPVD---FRKMRHLQVLQLENNPLQSPPAQ-ICEKGKVHIFK  263 (722)
T ss_pred             HHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCceeecchh---hhhhhhheeeeeccCCCCCChHH-HHhccceeeee
Confidence            9999999999997 7888887666 99999999999655554   89999999999999999854433 22334444445


Q ss_pred             EeeCcC
Q 038633          169 ELRLPN  174 (176)
Q Consensus       169 ~L~l~~  174 (176)
                      +|+..-
T Consensus       264 yL~~qA  269 (722)
T KOG0532|consen  264 YLSTQA  269 (722)
T ss_pred             eecchh
Confidence            555443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.94  E-value=5.7e-10  Score=81.78  Aligned_cols=136  Identities=18%  Similarity=0.119  Sum_probs=83.9

Q ss_pred             CcceEeecCCCCccccchhh----hcCCCCCcEEEccCccccCCcch-------------hhhcCcCCccEEEeecccCC
Q 038633           39 SFDTYEDDAGHELGGPISPS----LLQLKDLKYLDLSMNNFKGFKVP-------------EFIGSLKELRYLNLSGSFFS  101 (176)
Q Consensus        39 ~~l~~L~l~~n~l~~~~~~~----l~~l~~L~~L~l~~~~~~~~~~p-------------~~~~~l~~L~~L~l~~~~~~  101 (176)
                      ++|++++||+|.+....+..    +..+..|+.|+|.+|.+... ..             +.+++-+.|+++....|++.
T Consensus        92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~-ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle  170 (382)
T KOG1909|consen   92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPE-AGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE  170 (382)
T ss_pred             CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChh-HHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence            36777777777665443333    34456677777777765532 11             12334566777777777764


Q ss_pred             C----CcchhccCCCCCCEEEccCCccCccc--ccccccCCCCCccEEeccCCCCCCchhhhH-HHhhccccCcEeeCcC
Q 038633          102 G----TIPQSLGNLTNLLYLDLNNFLDQSNQ--IGLGWLSGLPSLKYLNLGGADLSKDAAYWL-ESISMLRSLVELRLPN  174 (176)
Q Consensus       102 ~----~~p~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~~~~L~~L~l~~  174 (176)
                      .    .+...++.++.|+.+.+..|.+....  .....+.++++|++|||.+|.+.......+ ..+..|++|+++++++
T Consensus       171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d  250 (382)
T KOG1909|consen  171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD  250 (382)
T ss_pred             cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence            2    23344566677888888887773222  333457788888888888888775544322 2456677788888877


Q ss_pred             C
Q 038633          175 C  175 (176)
Q Consensus       175 n  175 (176)
                      |
T Consensus       251 c  251 (382)
T KOG1909|consen  251 C  251 (382)
T ss_pred             c
Confidence            6

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=6.8e-10  Score=83.61  Aligned_cols=161  Identities=20%  Similarity=0.115  Sum_probs=109.3

Q ss_pred             cccccccceeeccCccccCCCCc-CcccCCcceEeecCCCCcc-ccchhhhcCCCCCcEEEccCccccCCcchhhhcCcC
Q 038633           11 LHLLSRIFALSLLRCCSVGSALA-QPFRDSFDTYEDDAGHELG-GPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLK   88 (176)
Q Consensus        11 ~~~~~~l~~l~l~~~~~~~~~~~-~~~~~~~l~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~   88 (176)
                      +..+++|+.|+++.|.+.....+ .......++.|.+++|.++ .++...+..+++|+.|++.+|....+ ......-+.
T Consensus       168 ~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~-~~~~~~i~~  246 (505)
T KOG3207|consen  168 AEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILI-KATSTKILQ  246 (505)
T ss_pred             HHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccce-ecchhhhhh
Confidence            44678999999999877543322 2346678889999999887 34556667899999999999852221 112222356


Q ss_pred             CccEEEeecccCCCCcc--hhccCCCCCCEEEccCCccCccccccc----ccCCCCCccEEeccCCCCCCchhhhHHHhh
Q 038633           89 ELRYLNLSGSFFSGTIP--QSLGNLTNLLYLDLNNFLDQSNQIGLG----WLSGLPSLKYLNLGGADLSKDAAYWLESIS  162 (176)
Q Consensus        89 ~L~~L~l~~~~~~~~~p--~~~~~l~~L~~L~l~~n~~~~~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  162 (176)
                      .|++|++++|++- ..+  ...+.+++|.-|+++.+.+........    .....++|++|++..|++.++..  +..+.
T Consensus       247 ~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~s--l~~l~  323 (505)
T KOG3207|consen  247 TLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRS--LNHLR  323 (505)
T ss_pred             HHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccc--cchhh
Confidence            7999999999886 333  456788999999999888843222111    12456789999999999876643  23455


Q ss_pred             ccccCcEeeCcCC
Q 038633          163 MLRSLVELRLPNC  175 (176)
Q Consensus       163 ~~~~L~~L~l~~n  175 (176)
                      .+++|+.|.+..|
T Consensus       324 ~l~nlk~l~~~~n  336 (505)
T KOG3207|consen  324 TLENLKHLRITLN  336 (505)
T ss_pred             ccchhhhhhcccc
Confidence            5667777665544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=1.3e-10  Score=83.82  Aligned_cols=158  Identities=22%  Similarity=0.194  Sum_probs=101.0

Q ss_pred             ccceeeccCccccCCC-CcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCcc-ccCCcchhhhcCcCCccEE
Q 038633           16 RIFALSLLRCCSVGSA-LAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNN-FKGFKVPEFIGSLKELRYL   93 (176)
Q Consensus        16 ~l~~l~l~~~~~~~~~-~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~p~~~~~l~~L~~L   93 (176)
                      .+..+|+++..|.... +....++.+|+.|.+.++++.+.+...++.-.+|..|++++|. ++.....--+.++..|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            3677888887775433 3345778899999999999999999999999999999999975 4432122346688999999


Q ss_pred             EeecccCCCCcchhcc-CC-CCCCEEEccCCccCcc-cccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEe
Q 038633           94 NLSGSFFSGTIPQSLG-NL-TNLLYLDLNNFLDQSN-QIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVEL  170 (176)
Q Consensus        94 ~l~~~~~~~~~p~~~~-~l-~~L~~L~l~~n~~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L  170 (176)
                      +++||......-..+. +. ..+..|+++++.-... ....-..+++++|.+|||+++-....  ..+..+.+++.|++|
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~--~~~~~~~kf~~L~~l  343 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN--DCFQEFFKFNYLQHL  343 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc--hHHHHHHhcchheee
Confidence            9999987632221111 11 3566666666543100 11111245666677777766543322  333455556666666


Q ss_pred             eCcCC
Q 038633          171 RLPNC  175 (176)
Q Consensus       171 ~l~~n  175 (176)
                      +++.|
T Consensus       344 SlsRC  348 (419)
T KOG2120|consen  344 SLSRC  348 (419)
T ss_pred             ehhhh
Confidence            66554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.80  E-value=7.4e-09  Score=86.22  Aligned_cols=152  Identities=30%  Similarity=0.286  Sum_probs=105.5

Q ss_pred             ccccceeeccCccccCCCCcCcccCCcceEeecCCCC--ccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCcc
Q 038633           14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHE--LGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELR   91 (176)
Q Consensus        14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~--l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~   91 (176)
                      ...++.+.+.++.+....  .....+.++.|-+.+|.  +.......|..++.|.+||+++|.-.. +.|..++.+.+||
T Consensus       522 ~~~~rr~s~~~~~~~~~~--~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~-~LP~~I~~Li~Lr  598 (889)
T KOG4658|consen  522 WNSVRRMSLMNNKIEHIA--GSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLS-KLPSSIGELVHLR  598 (889)
T ss_pred             hhheeEEEEeccchhhcc--CCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccC-cCChHHhhhhhhh
Confidence            455677777766554332  22333368788888885  655566668889999999999876555 4999999999999


Q ss_pred             EEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEee
Q 038633           92 YLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELR  171 (176)
Q Consensus        92 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~  171 (176)
                      +|+++++.+. .+|..++.++.|.+|++..+....  ..+.....+.+|++|.+..-... ........+..+.+|+.+.
T Consensus       599 yL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~--~~~~i~~~L~~Lr~L~l~~s~~~-~~~~~l~el~~Le~L~~ls  674 (889)
T KOG4658|consen  599 YLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLE--SIPGILLELQSLRVLRLPRSALS-NDKLLLKELENLEHLENLS  674 (889)
T ss_pred             cccccCCCcc-ccchHHHHHHhhheeccccccccc--cccchhhhcccccEEEeeccccc-cchhhHHhhhcccchhhhe
Confidence            9999999997 899999999999999998866411  11334566889999988776532 2222223455555555554


Q ss_pred             C
Q 038633          172 L  172 (176)
Q Consensus       172 l  172 (176)
                      .
T Consensus       675 ~  675 (889)
T KOG4658|consen  675 I  675 (889)
T ss_pred             e
Confidence            4

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.74  E-value=8.5e-09  Score=85.85  Aligned_cols=110  Identities=26%  Similarity=0.215  Sum_probs=86.3

Q ss_pred             ccccccceeeccCcc--ccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCC
Q 038633           12 HLLSRIFALSLLRCC--SVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKE   89 (176)
Q Consensus        12 ~~~~~l~~l~l~~~~--~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~   89 (176)
                      ..++.+++|-+..+.  +......-+..++.|+.||+++|.--..+|..++.+.+|++|+++++.+.  .+|..+..+..
T Consensus       542 ~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~--~LP~~l~~Lk~  619 (889)
T KOG4658|consen  542 SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS--HLPSGLGNLKK  619 (889)
T ss_pred             CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc--ccchHHHHHHh
Confidence            445678888777765  44444444677889999999988666789999999999999999999988  68999999999


Q ss_pred             ccEEEeecccCCCCcchhccCCCCCCEEEccCCc
Q 038633           90 LRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFL  123 (176)
Q Consensus        90 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~  123 (176)
                      |++|++..+......|.....+++|++|.+..-.
T Consensus       620 L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  620 LIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             hheeccccccccccccchhhhcccccEEEeeccc
Confidence            9999998877654556666678899999886543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.71  E-value=3.4e-10  Score=90.21  Aligned_cols=126  Identities=28%  Similarity=0.207  Sum_probs=91.6

Q ss_pred             cceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEc
Q 038633           40 FDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDL  119 (176)
Q Consensus        40 ~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l  119 (176)
                      .|...+.++|.+. .+..++.-++.++.|+++.|++...  . .+..++.|++||+++|.+. .+|..--.-..|+.|.+
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~l  239 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--D-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNL  239 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--H-HHHhcccccccccccchhc-cccccchhhhhheeeee
Confidence            3445567777774 5667777788899999999998843  3 7778889999999999886 66643111123888999


Q ss_pred             cCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633          120 NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN  176 (176)
Q Consensus       120 ~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~  176 (176)
                      .+|.+++...    +.++++|+.||+++|-+.+...  ...+..+..|+.|.|.||.
T Consensus       240 rnN~l~tL~g----ie~LksL~~LDlsyNll~~hse--L~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  240 RNNALTTLRG----IENLKSLYGLDLSYNLLSEHSE--LEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             cccHHHhhhh----HHhhhhhhccchhHhhhhcchh--hhHHHHHHHHHHHhhcCCc
Confidence            9998865544    5788899999999998876532  2355666778888888873

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.68  E-value=1.6e-08  Score=74.39  Aligned_cols=166  Identities=19%  Similarity=0.090  Sum_probs=107.0

Q ss_pred             ccccccccceeeccCccccCCCCcC----cccCCcceEeecCCCCccccchhh-------------hcCCCCCcEEEccC
Q 038633           10 DLHLLSRIFALSLLRCCSVGSALAQ----PFRDSFDTYEDDAGHELGGPISPS-------------LLQLKDLKYLDLSM   72 (176)
Q Consensus        10 ~~~~~~~l~~l~l~~~~~~~~~~~~----~~~~~~l~~L~l~~n~l~~~~~~~-------------l~~l~~L~~L~l~~   72 (176)
                      .+..++.++.++|++|.+-...+..    ......|++|.|.+|.+.......             ...-+.|+++..+.
T Consensus        87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r  166 (382)
T KOG1909|consen   87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR  166 (382)
T ss_pred             HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence            4456778899999998885443332    244678888899888876443332             23457788888888


Q ss_pred             ccccCC---cchhhhcCcCCccEEEeecccCCC----CcchhccCCCCCCEEEccCCccCcc--cccccccCCCCCccEE
Q 038633           73 NNFKGF---KVPEFIGSLKELRYLNLSGSFFSG----TIPQSLGNLTNLLYLDLNNFLDQSN--QIGLGWLSGLPSLKYL  143 (176)
Q Consensus        73 ~~~~~~---~~p~~~~~l~~L~~L~l~~~~~~~----~~p~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~~l~~L~~L  143 (176)
                      |.+...   .+...+...+.|+.+.++.|.+..    .+...+..++.|+.||+..|-++..  .....++...++|+.+
T Consensus       167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El  246 (382)
T KOG1909|consen  167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL  246 (382)
T ss_pred             cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence            877643   122446667788888888887742    1234566788888888888877321  1222335566678888


Q ss_pred             eccCCCCCCchhh-hHHHh-hccccCcEeeCcCC
Q 038633          144 NLGGADLSKDAAY-WLESI-SMLRSLVELRLPNC  175 (176)
Q Consensus       144 ~l~~n~l~~~~~~-~~~~l-~~~~~L~~L~l~~n  175 (176)
                      +++++.+...... ++..+ ...|.|+.+.+.+|
T Consensus       247 ~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gN  280 (382)
T KOG1909|consen  247 NLGDCLLENEGAIAFVDALKESAPSLEVLELAGN  280 (382)
T ss_pred             cccccccccccHHHHHHHHhccCCCCceeccCcc
Confidence            8888877655432 12223 23577777777776

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.60  E-value=1.3e-07  Score=64.91  Aligned_cols=106  Identities=24%  Similarity=0.206  Sum_probs=80.2

Q ss_pred             cceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcc--hhccCCCCCCEE
Q 038633           40 FDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIP--QSLGNLTNLLYL  117 (176)
Q Consensus        40 ~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p--~~~~~l~~L~~L  117 (176)
                      ....+|+.+|.+..  ...|..+++|.+|.+++|.++.+ .|.-...+++|+.|.+.+|.+. .+.  ..+..++.|++|
T Consensus        43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I-~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRI-DPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYL  118 (233)
T ss_pred             ccceecccccchhh--cccCCCccccceEEecCCcceee-ccchhhhccccceEEecCcchh-hhhhcchhccCCcccee
Confidence            45578999998743  34567889999999999999966 5555556788999999999986 332  346688999999


Q ss_pred             EccCCccCc-ccccccccCCCCCccEEeccCCC
Q 038633          118 DLNNFLDQS-NQIGLGWLSGLPSLKYLNLGGAD  149 (176)
Q Consensus       118 ~l~~n~~~~-~~~~~~~~~~l~~L~~L~l~~n~  149 (176)
                      .+-+|+... ...-...+..+++|++||+.+-.
T Consensus       119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             eecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            999998832 22333457889999999987643

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.58  E-value=6.7e-08  Score=78.74  Aligned_cols=133  Identities=25%  Similarity=0.248  Sum_probs=72.2

Q ss_pred             cceEeecCCCC-ccccchhhhc-CCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEE
Q 038633           40 FDTYEDDAGHE-LGGPISPSLL-QLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYL  117 (176)
Q Consensus        40 ~l~~L~l~~n~-l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L  117 (176)
                      +|++|+++|.. +....+..++ -+|.|+.|.+.+-.+...++-.-..++++|..||+++++++ .+ ..++.+++|+.|
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L  200 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVL  200 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHH
Confidence            56666776652 3333444444 35777777776666553323334446677777777777765 22 455666677766


Q ss_pred             EccCCccCcccccccccCCCCCccEEeccCCCCCCch---hhhHHHhhccccCcEeeCcCC
Q 038633          118 DLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDA---AYWLESISMLRSLVELRLPNC  175 (176)
Q Consensus       118 ~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~~~~L~~L~l~~n  175 (176)
                      .+.+=.+..... ...+..+++|++||+|........   ..+.+.-..+|.|+.||+++.
T Consensus       201 ~mrnLe~e~~~~-l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT  260 (699)
T KOG3665|consen  201 SMRNLEFESYQD-LIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT  260 (699)
T ss_pred             hccCCCCCchhh-HHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence            666654432221 223556777777777765544332   111111124567777776653

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.52  E-value=3.1e-09  Score=84.90  Aligned_cols=99  Identities=29%  Similarity=0.247  Sum_probs=79.7

Q ss_pred             CcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEe
Q 038633           65 LKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLN  144 (176)
Q Consensus        65 L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~  144 (176)
                      |.+.+.++|.+.  ....++..++.+++|+++.|++....  .+..++.|++||++.|.+...+...  ...++ |+.|.
T Consensus       166 L~~a~fsyN~L~--~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~--~~gc~-L~~L~  238 (1096)
T KOG1859|consen  166 LATASFSYNRLV--LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLS--MVGCK-LQLLN  238 (1096)
T ss_pred             HhhhhcchhhHH--hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccc--hhhhh-heeee
Confidence            666677888777  57788888999999999999997433  7889999999999999985544432  33555 99999


Q ss_pred             ccCCCCCCchhhhHHHhhccccCcEeeCcCC
Q 038633          145 LGGADLSKDAAYWLESISMLRSLVELRLPNC  175 (176)
Q Consensus       145 l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n  175 (176)
                      +.+|.+....     .+.++.+|+.||+++|
T Consensus       239 lrnN~l~tL~-----gie~LksL~~LDlsyN  264 (1096)
T KOG1859|consen  239 LRNNALTTLR-----GIENLKSLYGLDLSYN  264 (1096)
T ss_pred             ecccHHHhhh-----hHHhhhhhhccchhHh
Confidence            9999987443     6788999999999987

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.50  E-value=2.7e-08  Score=77.02  Aligned_cols=125  Identities=30%  Similarity=0.229  Sum_probs=62.2

Q ss_pred             CcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEE
Q 038633           39 SFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLD  118 (176)
Q Consensus        39 ~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~  118 (176)
                      ..++.+++..|.+.. .-..+..++++..+++.+|.+..  +...+..+++|++|++++|++....  .+..++.|+.|+
T Consensus        72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~  146 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELN  146 (414)
T ss_pred             HhHHhhccchhhhhh-hhcccccccceeeeeccccchhh--cccchhhhhcchheecccccccccc--chhhccchhhhe
Confidence            334444455555432 22334455666666666666652  2322455566666666666664221  233455566666


Q ss_pred             ccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCC
Q 038633          119 LNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNC  175 (176)
Q Consensus       119 l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n  175 (176)
                      +.+|.+.....    +..+.+|+.+++++|.+....+.  . +..+..++.+.+++|
T Consensus       147 l~~N~i~~~~~----~~~l~~L~~l~l~~n~i~~ie~~--~-~~~~~~l~~l~l~~n  196 (414)
T KOG0531|consen  147 LSGNLISDISG----LESLKSLKLLDLSYNRIVDIEND--E-LSELISLEELDLGGN  196 (414)
T ss_pred             eccCcchhccC----CccchhhhcccCCcchhhhhhhh--h-hhhccchHHHhccCC
Confidence            66666533222    34455666666666665533321  0 244455555555544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.44  E-value=1.6e-08  Score=78.28  Aligned_cols=107  Identities=25%  Similarity=0.069  Sum_probs=49.0

Q ss_pred             cccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCc
Q 038633           11 LHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKEL   90 (176)
Q Consensus        11 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L   90 (176)
                      +..+.++..+++.++.|.+.... ...+.+|++|++++|.|+...+  +..++.|+.|++++|.+...   ..+..+..|
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~---~~~~~l~~L  164 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDI---SGLESLKSL  164 (414)
T ss_pred             cccccceeeeeccccchhhcccc-hhhhhcchheeccccccccccc--hhhccchhhheeccCcchhc---cCCccchhh
Confidence            34445555555555555443210 2344455555555555543322  23344455555555555522   222334555


Q ss_pred             cEEEeecccCCCCcc-hhccCCCCCCEEEccCCcc
Q 038633           91 RYLNLSGSFFSGTIP-QSLGNLTNLLYLDLNNFLD  124 (176)
Q Consensus        91 ~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~n~~  124 (176)
                      +.+++++|++...-+ . ...+..++.+.+.+|.+
T Consensus       165 ~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i  198 (414)
T KOG0531|consen  165 KLLDLSYNRIVDIENDE-LSELISLEELDLGGNSI  198 (414)
T ss_pred             hcccCCcchhhhhhhhh-hhhccchHHHhccCCch
Confidence            555555555542222 1 23444455555555444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.41  E-value=2.8e-07  Score=63.30  Aligned_cols=128  Identities=25%  Similarity=0.197  Sum_probs=91.6

Q ss_pred             ceEeecCCCCccccchhhhc-CCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEc
Q 038633           41 DTYEDDAGHELGGPISPSLL-QLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDL  119 (176)
Q Consensus        41 l~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l  119 (176)
                      -+++++.+..+..+.-  ++ -..+...+|+++|.+..   -..++.++.|++|.+.+|++....|..-..+++|+.|.+
T Consensus        21 e~e~~LR~lkip~ien--lg~~~d~~d~iDLtdNdl~~---l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~L   95 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIEN--LGATLDQFDAIDLTDNDLRK---LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLIL   95 (233)
T ss_pred             ccccccccccccchhh--ccccccccceecccccchhh---cccCCCccccceEEecCCcceeeccchhhhccccceEEe
Confidence            4567777776642211  11 24567788999998873   356778999999999999998666654446788999999


Q ss_pred             cCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcC
Q 038633          120 NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPN  174 (176)
Q Consensus       120 ~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~  174 (176)
                      .+|.++...+. .-+..+++|+.|.+-+|......--=.-.+..+|+|+.||...
T Consensus        96 tnNsi~~l~dl-~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen   96 TNNSIQELGDL-DPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             cCcchhhhhhc-chhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            99999655443 2367899999999999998754321001456788999988753

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.41  E-value=5.6e-07  Score=46.97  Aligned_cols=34  Identities=38%  Similarity=0.488  Sum_probs=12.5

Q ss_pred             CcEEEccCccccCCcchhhhcCcCCccEEEeecccC
Q 038633           65 LKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFF  100 (176)
Q Consensus        65 L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~  100 (176)
                      |++|++++|+++  .+|+.+..+++|++|++++|++
T Consensus         3 L~~L~l~~N~i~--~l~~~l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen    3 LEELDLSNNQIT--DLPPELSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             -SEEEETSSS-S--SHGGHGTTCTTSSEEEETSSCC
T ss_pred             ceEEEccCCCCc--ccCchHhCCCCCCEEEecCCCC
Confidence            334444444433  2333333444444444444433

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.35  E-value=1.7e-08  Score=65.23  Aligned_cols=105  Identities=20%  Similarity=0.182  Sum_probs=68.9

Q ss_pred             ccceeeccCccccCCC--CcCcccCCcceEeecCCCCccccchhhhc-CCCCCcEEEccCccccCCcchhhhcCcCCccE
Q 038633           16 RIFALSLLRCCSVGSA--LAQPFRDSFDTYEDDAGHELGGPISPSLL-QLKDLKYLDLSMNNFKGFKVPEFIGSLKELRY   92 (176)
Q Consensus        16 ~l~~l~l~~~~~~~~~--~~~~~~~~~l~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~   92 (176)
                      .+..++++.|.+-...  .........++..++++|.+. .+|+.|. .++.++.+++.+|.++  .+|..+..|+.|+.
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis--dvPeE~Aam~aLr~  104 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS--DVPEELAAMPALRS  104 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh--hchHHHhhhHHhhh
Confidence            3445667776553221  112344455666778888775 3444444 4567777888888877  56777777788888


Q ss_pred             EEeecccCCCCcchhccCCCCCCEEEccCCcc
Q 038633           93 LNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLD  124 (176)
Q Consensus        93 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~  124 (176)
                      ++++.|.+. ..|+.+..+.++..|+..+|..
T Consensus       105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~  135 (177)
T KOG4579|consen  105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENAR  135 (177)
T ss_pred             cccccCccc-cchHHHHHHHhHHHhcCCCCcc
Confidence            888888776 6677766777777777777765

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.29  E-value=7e-08  Score=62.42  Aligned_cols=107  Identities=22%  Similarity=0.206  Sum_probs=82.3

Q ss_pred             ceEeecCCCCccccchhh---hcCCCCCcEEEccCccccCCcchhhhc-CcCCccEEEeecccCCCCcchhccCCCCCCE
Q 038633           41 DTYEDDAGHELGGPISPS---LLQLKDLKYLDLSMNNFKGFKVPEFIG-SLKELRYLNLSGSFFSGTIPQSLGNLTNLLY  116 (176)
Q Consensus        41 l~~L~l~~n~l~~~~~~~---l~~l~~L~~L~l~~~~~~~~~~p~~~~-~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~  116 (176)
                      +..++++++.+- -+++.   +.....|+..++++|.+.  .+|+.+. .++..+.+++++|++. .+|+.+..++.|+.
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk--~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~  104 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK--KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS  104 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh--hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence            446888888773 34444   455566777899999999  5676655 5668999999999998 88988999999999


Q ss_pred             EEccCCccCcccccccccCCCCCccEEeccCCCCCCch
Q 038633          117 LDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDA  154 (176)
Q Consensus       117 L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  154 (176)
                      +++..|++...+..   +..+.++..|+..+|.....+
T Consensus       105 lNl~~N~l~~~p~v---i~~L~~l~~Lds~~na~~eid  139 (177)
T KOG4579|consen  105 LNLRFNPLNAEPRV---IAPLIKLDMLDSPENARAEID  139 (177)
T ss_pred             cccccCccccchHH---HHHHHhHHHhcCCCCccccCc
Confidence            99999998543332   455788888888888876544

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.24  E-value=2.8e-06  Score=44.33  Aligned_cols=37  Identities=38%  Similarity=0.461  Sum_probs=24.7

Q ss_pred             CCccEEEeecccCCCCcchhccCCCCCCEEEccCCccC
Q 038633           88 KELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQ  125 (176)
Q Consensus        88 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~  125 (176)
                      ++|++|++++|+++ .+|+.++.+++|+.|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            35777777777776 56666777777777777777764

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.23  E-value=7.3e-07  Score=72.82  Aligned_cols=139  Identities=19%  Similarity=0.170  Sum_probs=99.4

Q ss_pred             cccceeeccCcccc--CCCCcCcccCCcceEeecCCCCc-cccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCcc
Q 038633           15 SRIFALSLLRCCSV--GSALAQPFRDSFDTYEDDAGHEL-GGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELR   91 (176)
Q Consensus        15 ~~l~~l~l~~~~~~--~~~~~~~~~~~~l~~L~l~~n~l-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~   91 (176)
                      .+|+.|++++....  +........++.|+.|.+.+-.+ .+++.....++++|..||+++++++..   ..++.+++||
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHH
Confidence            46778888775442  11123456778899999999765 345566677899999999999999943   6788899999


Q ss_pred             EEEeecccCCC-CcchhccCCCCCCEEEccCCccCcccccc----cccCCCCCccEEeccCCCCCCchhh
Q 038633           92 YLNLSGSFFSG-TIPQSLGNLTNLLYLDLNNFLDQSNQIGL----GWLSGLPSLKYLNLGGADLSKDAAY  156 (176)
Q Consensus        92 ~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~n~~~~~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~  156 (176)
                      .|.+.+=.+.. ..-..+..+++|+.||++..+........    .--..++.|+.||.+++.+.+...+
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le  268 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILE  268 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHH
Confidence            99888866652 12235668999999999987652222100    1134689999999999988765443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.17  E-value=5.4e-06  Score=59.76  Aligned_cols=88  Identities=19%  Similarity=0.122  Sum_probs=55.9

Q ss_pred             cccccceeeccCccccCCCCc----CcccCCcceEeecCCCCc---cccch-------hhhcCCCCCcEEEccCccccCC
Q 038633           13 LLSRIFALSLLRCCSVGSALA----QPFRDSFDTYEDDAGHEL---GGPIS-------PSLLQLKDLKYLDLSMNNFKGF   78 (176)
Q Consensus        13 ~~~~l~~l~l~~~~~~~~~~~----~~~~~~~l~~L~l~~n~l---~~~~~-------~~l~~l~~L~~L~l~~~~~~~~   78 (176)
                      .+..++.+++++|.|......    ......+|+..+++.-..   .++++       +++..++.++..++++|.|...
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            356788888888877543221    223345566666655432   22222       4456778888888888887765


Q ss_pred             cchhh----hcCcCCccEEEeecccCC
Q 038633           79 KVPEF----IGSLKELRYLNLSGSFFS  101 (176)
Q Consensus        79 ~~p~~----~~~l~~L~~L~l~~~~~~  101 (176)
                       .|+.    +++...|++|.+++|.+.
T Consensus       108 -~~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238         108 -FPEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             -cchHHHHHHhcCCCceeEEeecCCCC
Confidence             5543    456677888888888764

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.16  E-value=1.8e-06  Score=62.84  Aligned_cols=62  Identities=21%  Similarity=0.246  Sum_probs=41.9

Q ss_pred             CCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCC
Q 038633          111 LTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNC  175 (176)
Q Consensus       111 l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n  175 (176)
                      ++++..+-++.|+++.... ...+...+.+--|+|+.|++-.+..  +..+.+++.|+.|.+.++
T Consensus       198 Fpnv~sv~v~e~PlK~~s~-ek~se~~p~~~~LnL~~~~idswas--vD~Ln~f~~l~dlRv~~~  259 (418)
T KOG2982|consen  198 FPNVNSVFVCEGPLKTESS-EKGSEPFPSLSCLNLGANNIDSWAS--VDALNGFPQLVDLRVSEN  259 (418)
T ss_pred             cccchheeeecCcccchhh-cccCCCCCcchhhhhcccccccHHH--HHHHcCCchhheeeccCC
Confidence            4677777788887743222 2235566677778888888876654  357778888888877765

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.16  E-value=2.1e-06  Score=61.80  Aligned_cols=139  Identities=17%  Similarity=0.164  Sum_probs=71.6

Q ss_pred             ccCCcceEeecCCCCccccchhh----hcCCCCCcEEEccCccccCC---cch---------hhhcCcCCccEEEeeccc
Q 038633           36 FRDSFDTYEDDAGHELGGPISPS----LLQLKDLKYLDLSMNNFKGF---KVP---------EFIGSLKELRYLNLSGSF   99 (176)
Q Consensus        36 ~~~~~l~~L~l~~n~l~~~~~~~----l~~l~~L~~L~l~~~~~~~~---~~p---------~~~~~l~~L~~L~l~~~~   99 (176)
                      ..++.++..+++.|.+....|..    +..-+.|..|.+++|.....   .+.         +....-|.|++.....|+
T Consensus        89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR  168 (388)
T COG5238          89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR  168 (388)
T ss_pred             hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence            44556666666666665444433    33445566666666654432   011         112234566777766666


Q ss_pred             CCCCcc-----hhccCCCCCCEEEccCCccCccc---ccccccCCCCCccEEeccCCCCCCchhhhH-HHhhccccCcEe
Q 038633          100 FSGTIP-----QSLGNLTNLLYLDLNNFLDQSNQ---IGLGWLSGLPSLKYLNLGGADLSKDAAYWL-ESISMLRSLVEL  170 (176)
Q Consensus       100 ~~~~~p-----~~~~~l~~L~~L~l~~n~~~~~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~~~~L~~L  170 (176)
                      +. ..|     ..+..+..|+.+.+..|.+....   .....+..+.+|++||+..|.++-...... ..+..|+.|++|
T Consensus       169 le-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL  247 (388)
T COG5238         169 LE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL  247 (388)
T ss_pred             hc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence            64 222     12334456666777776662211   011113455667777777776654433322 234456666666


Q ss_pred             eCcCC
Q 038633          171 RLPNC  175 (176)
Q Consensus       171 ~l~~n  175 (176)
                      .+.+|
T Consensus       248 ~lnDC  252 (388)
T COG5238         248 RLNDC  252 (388)
T ss_pred             cccch
Confidence            66554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.09  E-value=3.1e-07  Score=66.79  Aligned_cols=134  Identities=19%  Similarity=0.056  Sum_probs=89.3

Q ss_pred             cceEeecCCCCccc-cchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCc--chhccCCCCCCE
Q 038633           40 FDTYEDDAGHELGG-PISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTI--PQSLGNLTNLLY  116 (176)
Q Consensus        40 ~l~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~--p~~~~~l~~L~~  116 (176)
                      .+++||++...++. .....+..+.+|+-|.+.++.+.+. +...+..-..|+.|+++++.-..+-  --.+..++.|+.
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~-I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDP-IVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcH-HHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            47888998888763 2445566788888889988888875 7777777788999999887532221  123557888999


Q ss_pred             EEccCCccCcccccccccCCC-CCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCC
Q 038633          117 LDLNNFLDQSNQIGLGWLSGL-PSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNC  175 (176)
Q Consensus       117 L~l~~n~~~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n  175 (176)
                      |++++|...... ...++.+. .+|..|+++|..-.-.......-..++|+|.+|||++|
T Consensus       265 LNlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~  323 (419)
T KOG2120|consen  265 LNLSWCFLFTEK-VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDS  323 (419)
T ss_pred             cCchHhhccchh-hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccc
Confidence            999988773221 22223333 36778888876422122221123457899999999987

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.93  E-value=7.7e-06  Score=58.26  Aligned_cols=129  Identities=26%  Similarity=0.149  Sum_probs=72.7

Q ss_pred             ccceeeccCccccC-CCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCc--cccCCcchhhhcCcCCccE
Q 038633           16 RIFALSLLRCCSVG-SALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMN--NFKGFKVPEFIGSLKELRY   92 (176)
Q Consensus        16 ~l~~l~l~~~~~~~-~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~--~~~~~~~p~~~~~l~~L~~   92 (176)
                      .++.+.+.+|.-.. .+...+.....++.|++.+..++..  ..+..+++|++|.++.|  .+... ++.-...+++|++
T Consensus        19 ~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~-l~vl~e~~P~l~~   95 (260)
T KOG2739|consen   19 QVDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGG-LEVLAEKAPNLKV   95 (260)
T ss_pred             hhhhhhcchhhhcCCCcccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCccccccc-ceehhhhCCceeE
Confidence            34455555433322 2333445555667777766666432  22445778888888888  55544 4444445588888


Q ss_pred             EEeecccCCC-CcchhccCCCCCCEEEccCCccCc-ccccccccCCCCCccEEeccC
Q 038633           93 LNLSGSFFSG-TIPQSLGNLTNLLYLDLNNFLDQS-NQIGLGWLSGLPSLKYLNLGG  147 (176)
Q Consensus        93 L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~l~~L~~L~l~~  147 (176)
                      +++++|++.. ..-..+..+.+|..|++..|.... ...-...|.-+++|++||-..
T Consensus        96 l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen   96 LNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             EeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence            8888888752 111234455667777777776522 112223456677777765433

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.89  E-value=4e-06  Score=59.70  Aligned_cols=113  Identities=22%  Similarity=0.171  Sum_probs=64.7

Q ss_pred             chhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecc--cCCCCcchhccCCCCCCEEEccCCccCccccccc
Q 038633           55 ISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGS--FFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLG  132 (176)
Q Consensus        55 ~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~--~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~  132 (176)
                      +....-.+..|+.+.+.+...+.   -..+..+++|+.|.++.|  ++...++.....+++|+++++++|+++. .....
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt---~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-lstl~  110 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTT---LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-LSTLR  110 (260)
T ss_pred             cccccccccchhhhhhhccceee---cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-ccccc
Confidence            34444456667777777766662   244566778888888888  5544444444455888888888888753 22222


Q ss_pred             ccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEee
Q 038633          133 WLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELR  171 (176)
Q Consensus       133 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~  171 (176)
                      .+..+.+|.+|++..|......-.--..+..++.|+.|+
T Consensus       111 pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  111 PLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             hhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence            245566677777777654432110001333445555554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.88  E-value=1.2e-06  Score=63.72  Aligned_cols=107  Identities=24%  Similarity=0.138  Sum_probs=72.9

Q ss_pred             ccceeeccCccccCCCC--cCcccCCcceEeecCCCCccc--cchhhhcCCCCCcEEEccCccccCCcchhhh-cCcCCc
Q 038633           16 RIFALSLLRCCSVGSAL--AQPFRDSFDTYEDDAGHELGG--PISPSLLQLKDLKYLDLSMNNFKGFKVPEFI-GSLKEL   90 (176)
Q Consensus        16 ~l~~l~l~~~~~~~~~~--~~~~~~~~l~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~-~~l~~L   90 (176)
                      .+..+.+.+|.|.....  ......+.++++|+.+|.|++  ++...+.+++.|++|+++.|.+... + +.+ -...+|
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-I-~~lp~p~~nl  123 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD-I-KSLPLPLKNL  123 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc-c-ccCcccccce
Confidence            44456667776643322  223455678899999999874  3445566899999999999988743 2 233 256789


Q ss_pred             cEEEeecccCCCCcc-hhccCCCCCCEEEccCCcc
Q 038633           91 RYLNLSGSFFSGTIP-QSLGNLTNLLYLDLNNFLD  124 (176)
Q Consensus        91 ~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~n~~  124 (176)
                      +++.+.+..+..... ..+..+|.++.+.++.|..
T Consensus       124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~  158 (418)
T KOG2982|consen  124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL  158 (418)
T ss_pred             EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence            999999988753322 3455777788887777754

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.75  E-value=9.4e-07  Score=63.75  Aligned_cols=101  Identities=23%  Similarity=0.200  Sum_probs=71.4

Q ss_pred             ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEE
Q 038633           14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYL   93 (176)
Q Consensus        14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L   93 (176)
                      +.+++.|+..+|.+..+...  ..+..|+.|.|+-|.|+..  ..+..+++|++|+|..|.|.....-..+..+++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DIsic--~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISIC--EKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHHHHH--HhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            45677888888887665433  5566688888888888654  3356788888888888888754333557788888888


Q ss_pred             EeecccCCCCcch-----hccCCCCCCEEE
Q 038633           94 NLSGSFFSGTIPQ-----SLGNLTNLLYLD  118 (176)
Q Consensus        94 ~l~~~~~~~~~p~-----~~~~l~~L~~L~  118 (176)
                      .+..|...+..+.     .+..+++|+.||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            8888877655543     244677777776

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.74  E-value=0.0001  Score=56.61  Aligned_cols=78  Identities=15%  Similarity=0.060  Sum_probs=49.8

Q ss_pred             ccccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCc-cccCCcchhhhcC
Q 038633            8 LSDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMN-NFKGFKVPEFIGS   86 (176)
Q Consensus         8 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~p~~~~~   86 (176)
                      .+.+..+++++.|++++|.+... |   .-..+|+.|.++++.--..+|..+  ..+|+.|++++| .+.  .+|.    
T Consensus        45 ~~r~~~~~~l~~L~Is~c~L~sL-P---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~--sLP~----  112 (426)
T PRK15386         45 TPQIEEARASGRLYIKDCDIESL-P---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS--GLPE----  112 (426)
T ss_pred             HHHHHHhcCCCEEEeCCCCCccc-C---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc--cccc----
Confidence            34455678899999999865443 2   233468889998753324556544  357889999888 443  2443    


Q ss_pred             cCCccEEEeeccc
Q 038633           87 LKELRYLNLSGSF   99 (176)
Q Consensus        87 l~~L~~L~l~~~~   99 (176)
                        +|+.|++..+.
T Consensus       113 --sLe~L~L~~n~  123 (426)
T PRK15386        113 --SVRSLEIKGSA  123 (426)
T ss_pred             --ccceEEeCCCC
Confidence              45666666544

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.66  E-value=0.00025  Score=54.53  Aligned_cols=62  Identities=15%  Similarity=0.093  Sum_probs=44.0

Q ss_pred             CCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecc-cCCCCcchh
Q 038633           38 DSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGS-FFSGTIPQS  107 (176)
Q Consensus        38 ~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~-~~~~~~p~~  107 (176)
                      ..+++.|++++|.++ .+|.   -..+|++|.+++|.-... .|..++  .+|+.|.+++| .+. .+|..
T Consensus        51 ~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLts-LP~~LP--~nLe~L~Ls~Cs~L~-sLP~s  113 (426)
T PRK15386         51 ARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTT-LPGSIP--EGLEKLTVCHCPEIS-GLPES  113 (426)
T ss_pred             hcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCccc-CCchhh--hhhhheEccCccccc-ccccc
Confidence            467889999999875 4552   245699999998654443 676553  68999999998 443 55643

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.55  E-value=0.00058  Score=43.90  Aligned_cols=106  Identities=16%  Similarity=0.123  Sum_probs=49.4

Q ss_pred             CcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCC
Q 038633           34 QPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTN  113 (176)
Q Consensus        34 ~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~  113 (176)
                      .+.....++.+.+.. .+.......|.+++.++.+.+.++ +... ....+..+.+++.+.+.+ .+.......+..++.
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i-~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSI-GDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE--TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cccc-ceeeeecccccccccccc-ccccccccccccccc
Confidence            344555666666654 454555566777777777777664 4422 333455666777777755 332122234555777


Q ss_pred             CCEEEccCCccCcccccccccCCCCCccEEeccC
Q 038633          114 LLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGG  147 (176)
Q Consensus       114 L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~  147 (176)
                      ++.+++..+ +  .......+.++ .++.+.+..
T Consensus        83 l~~i~~~~~-~--~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   83 LKNIDIPSN-I--TEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             ECEEEETTT----BEEHTTTTTT--T--EEE-TT
T ss_pred             ccccccCcc-c--cEEchhhhcCC-CceEEEECC
Confidence            777777554 3  22223346666 777777665

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.45  E-value=0.00055  Score=44.03  Aligned_cols=124  Identities=11%  Similarity=0.047  Sum_probs=65.8

Q ss_pred             cccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcC
Q 038633            9 SDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLK   88 (176)
Q Consensus         9 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~   88 (176)
                      ..+..+..++.+.+.+ .+.......+..+..++.+.+..+ +.......|..+..++.+.+.+ .+... ....+..+.
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i-~~~~F~~~~   81 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSI-GDNAFSNCT   81 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE--TTTTTT-T
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccc-ccccccccc
Confidence            4566788889998885 455555566778878999999875 6666667788898999999976 44422 334566789


Q ss_pred             CccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCcc
Q 038633           89 ELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLK  141 (176)
Q Consensus        89 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~  141 (176)
                      +++.+++..+ +.......+... .++.+.+..+ +  .......|.++++|+
T Consensus        82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~-~--~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPSN-I--TKIEENAFKNCTKLK  129 (129)
T ss_dssp             TECEEEETTT--BEEHTTTTTT--T--EEE-TTB----SS----GGG------
T ss_pred             cccccccCcc-ccEEchhhhcCC-CceEEEECCC-c--cEECCccccccccCC
Confidence            9999999765 442333456665 8999988763 2  122334467776653

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.37  E-value=9e-06  Score=58.82  Aligned_cols=101  Identities=22%  Similarity=0.132  Sum_probs=60.3

Q ss_pred             CCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchh--ccCCCCCC
Q 038633           38 DSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQS--LGNLTNLL  115 (176)
Q Consensus        38 ~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~--~~~l~~L~  115 (176)
                      +.+++.|+.+++.++++  .....|+.|++|.|+-|+|+..   +.+..+++|++|+|..|.|. .+.+.  +.++++|+
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL---~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr   91 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL---APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLR   91 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc---hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhh
Confidence            34556677777777542  2234677777777777777732   44556677777777777775 33332  44677777


Q ss_pred             EEEccCCccCcc-c--ccccccCCCCCccEEe
Q 038633          116 YLDLNNFLDQSN-Q--IGLGWLSGLPSLKYLN  144 (176)
Q Consensus       116 ~L~l~~n~~~~~-~--~~~~~~~~l~~L~~L~  144 (176)
                      .|=+..|+.-.. +  .-...++.+++|+.||
T Consensus        92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            777777665110 0  1112355666666664

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.39  E-value=0.0017  Score=28.31  Aligned_cols=10  Identities=70%  Similarity=0.962  Sum_probs=3.7

Q ss_pred             EEEccCcccc
Q 038633           67 YLDLSMNNFK   76 (176)
Q Consensus        67 ~L~l~~~~~~   76 (176)
                      +||+++|.++
T Consensus         4 ~Ldls~n~l~   13 (22)
T PF00560_consen    4 YLDLSGNNLT   13 (22)
T ss_dssp             EEEETSSEES
T ss_pred             EEECCCCcCE
Confidence            3333333333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.39  E-value=0.0017  Score=28.28  Aligned_cols=21  Identities=29%  Similarity=0.306  Sum_probs=14.8

Q ss_pred             cceEeecCCCCccccchhhhcC
Q 038633           40 FDTYEDDAGHELGGPISPSLLQ   61 (176)
Q Consensus        40 ~l~~L~l~~n~l~~~~~~~l~~   61 (176)
                      +|++|++++|.++ .+|..|.+
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            4678888888887 66666544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.34  E-value=0.0031  Score=49.55  Aligned_cols=113  Identities=21%  Similarity=0.169  Sum_probs=50.4

Q ss_pred             CCcceEeecCCC-Ccccc-chhhhcCCCCCcEEEccCc-cccCC---cchhhhcCcCCccEEEeeccc-CCCCcchhcc-
Q 038633           38 DSFDTYEDDAGH-ELGGP-ISPSLLQLKDLKYLDLSMN-NFKGF---KVPEFIGSLKELRYLNLSGSF-FSGTIPQSLG-  109 (176)
Q Consensus        38 ~~~l~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~l~~~-~~~~~---~~p~~~~~l~~L~~L~l~~~~-~~~~~p~~~~-  109 (176)
                      ...++.+.+.++ .++.. .......++.|+.|+++++ .....   ........+.+|+.|+++++. +++..-..+. 
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            345555555554 22221 2233345566666666652 11111   011222334556666666665 3333223332 


Q ss_pred             CCCCCCEEEccCCc-cCcccccccccCCCCCccEEeccCCCCC
Q 038633          110 NLTNLLYLDLNNFL-DQSNQIGLGWLSGLPSLKYLNLGGADLS  151 (176)
Q Consensus       110 ~l~~L~~L~l~~n~-~~~~~~~~~~~~~l~~L~~L~l~~n~l~  151 (176)
                      .+++|+.|.+..+. ++ ..........+++|++|+++++...
T Consensus       267 ~c~~L~~L~l~~c~~lt-~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLT-DEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             hCCCcceEccCCCCccc-hhHHHHHHHhcCcccEEeeecCccc
Confidence            25566666655444 21 1111222345556666666665543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.33  E-value=0.0014  Score=45.47  Aligned_cols=86  Identities=22%  Similarity=0.115  Sum_probs=44.9

Q ss_pred             ccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhc-CcCCccEEEeecc-cCCCCcchhccCCCC
Q 038633           36 FRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIG-SLKELRYLNLSGS-FFSGTIPQSLGNLTN  113 (176)
Q Consensus        36 ~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~-~l~~L~~L~l~~~-~~~~~~p~~~~~l~~  113 (176)
                      .....++.+|-++..|..+.-.-+.+++.++.|.+.+|.-.....-+.+. ..++|+.|++++| +|++.--..+..+++
T Consensus        98 ~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lkn  177 (221)
T KOG3864|consen   98 ADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKN  177 (221)
T ss_pred             CCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhh
Confidence            33445566666666666666666666666666666666543221222222 2356666666655 333222333444555


Q ss_pred             CCEEEccC
Q 038633          114 LLYLDLNN  121 (176)
Q Consensus       114 L~~L~l~~  121 (176)
                      |+.|.+.+
T Consensus       178 Lr~L~l~~  185 (221)
T KOG3864|consen  178 LRRLHLYD  185 (221)
T ss_pred             hHHHHhcC
Confidence            55554443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.25  E-value=0.0032  Score=48.24  Aligned_cols=157  Identities=18%  Similarity=0.125  Sum_probs=73.1

Q ss_pred             cccceeeccCccccCCCC--cCcccCCcceEeecCCC-Cccccchhhhc-CCCCCcEEEccCcc-ccCCcchhhh-cCcC
Q 038633           15 SRIFALSLLRCCSVGSAL--AQPFRDSFDTYEDDAGH-ELGGPISPSLL-QLKDLKYLDLSMNN-FKGFKVPEFI-GSLK   88 (176)
Q Consensus        15 ~~l~~l~l~~~~~~~~~~--~~~~~~~~l~~L~l~~n-~l~~~~~~~l~-~l~~L~~L~l~~~~-~~~~~~p~~~-~~l~   88 (176)
                      .-+..+++..|.......  ........+++++.+++ .+++..-..+. +..+|++|.+..|+ |+.. .-..+ .+.+
T Consensus       268 ~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~-~ft~l~rn~~  346 (483)
T KOG4341|consen  268 LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDR-GFTMLGRNCP  346 (483)
T ss_pred             hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhh-hhhhhhcCCh
Confidence            345555555554432211  12344556667777665 34443333433 56777777777765 3332 11222 2455


Q ss_pred             CccEEEeecccCCCC--cchhccCCCCCCEEEccCCccCccc---ccccccCCCCCccEEeccCCCCCCchhhhHHHhhc
Q 038633           89 ELRYLNLSGSFFSGT--IPQSLGNLTNLLYLDLNNFLDQSNQ---IGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISM  163 (176)
Q Consensus        89 ~L~~L~l~~~~~~~~--~p~~~~~l~~L~~L~l~~n~~~~~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  163 (176)
                      +|+.+++..+.....  +...-.+.+.|+.+.+++|...+..   .....-..+..|+.+-++++.....  ....-+..
T Consensus       347 ~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d--~~Le~l~~  424 (483)
T KOG4341|consen  347 HLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD--ATLEHLSI  424 (483)
T ss_pred             hhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH--HHHHHHhh
Confidence            666666666554211  1122224566666666665542111   0011112344555555555554322  11223444


Q ss_pred             cccCcEeeCcC
Q 038633          164 LRSLVELRLPN  174 (176)
Q Consensus       164 ~~~L~~L~l~~  174 (176)
                      .++|+.+++-+
T Consensus       425 c~~Leri~l~~  435 (483)
T KOG4341|consen  425 CRNLERIELID  435 (483)
T ss_pred             Ccccceeeeec
Confidence            55665555544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.85  E-value=0.0021  Score=50.50  Aligned_cols=110  Identities=21%  Similarity=0.062  Sum_probs=65.0

Q ss_pred             ccccceeeccCccccCC--CCcCcccCCcceEeecCCC-Cccccc----hhhhcCCCCCcEEEccCcc-ccCCcchhhhc
Q 038633           14 LSRIFALSLLRCCSVGS--ALAQPFRDSFDTYEDDAGH-ELGGPI----SPSLLQLKDLKYLDLSMNN-FKGFKVPEFIG   85 (176)
Q Consensus        14 ~~~l~~l~l~~~~~~~~--~~~~~~~~~~l~~L~l~~n-~l~~~~----~~~l~~l~~L~~L~l~~~~-~~~~~~p~~~~   85 (176)
                      ++.++.+.+.+|.....  ..........|+.|+++++ ......    ......+++|+.|+++.+. ++.. .-..+.
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~-~l~~l~  265 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDI-GLSALA  265 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCch-hHHHHH
Confidence            56777777777655443  2234566677788888762 111111    1233456778888888877 5654 333333


Q ss_pred             -CcCCccEEEeeccc-CCCCcch-hccCCCCCCEEEccCCcc
Q 038633           86 -SLKELRYLNLSGSF-FSGTIPQ-SLGNLTNLLYLDLNNFLD  124 (176)
Q Consensus        86 -~l~~L~~L~l~~~~-~~~~~p~-~~~~l~~L~~L~l~~n~~  124 (176)
                       .+++|+.|.+.+|. +++..-. ....++.|++|++.++..
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence             36788888877666 3432222 233567788888887765

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.74  E-value=0.0021  Score=44.59  Aligned_cols=86  Identities=22%  Similarity=0.214  Sum_probs=48.6

Q ss_pred             CCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCC-cchhcc-CCCCCCEEEccCCccCcccccccccCCCCCcc
Q 038633           64 DLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGT-IPQSLG-NLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLK  141 (176)
Q Consensus        64 ~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~-~p~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~  141 (176)
                      .++.+|-+++.+... .-+.+..+++++.|.+.+|.--+. .-+.++ ..++|+.|++++|+-.+ ......+..+++|+
T Consensus       102 ~IeaVDAsds~I~~e-Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT-~~GL~~L~~lknLr  179 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYE-GLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT-DGGLACLLKLKNLR  179 (221)
T ss_pred             eEEEEecCCchHHHH-HHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec-hhHHHHHHHhhhhH
Confidence            466677777776654 556666777777777777653221 112222 34677777777765421 11122355666676


Q ss_pred             EEeccCCCCC
Q 038633          142 YLNLGGADLS  151 (176)
Q Consensus       142 ~L~l~~n~l~  151 (176)
                      .|.+.+-..+
T Consensus       180 ~L~l~~l~~v  189 (221)
T KOG3864|consen  180 RLHLYDLPYV  189 (221)
T ss_pred             HHHhcCchhh
Confidence            6666554433

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.33  E-value=0.014  Score=23.63  Aligned_cols=11  Identities=45%  Similarity=0.585  Sum_probs=3.5

Q ss_pred             ccEEEeecccC
Q 038633           90 LRYLNLSGSFF  100 (176)
Q Consensus        90 L~~L~l~~~~~  100 (176)
                      |+.|++++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            34444444443

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=94.77  E-value=0.017  Score=44.53  Aligned_cols=156  Identities=17%  Similarity=0.062  Sum_probs=96.0

Q ss_pred             cccccceeeccCccccCCCC--cCcccCCcceEeecCCCC-ccccchhhhc-CCCCCcEEEccCccccCC-cchhhhcCc
Q 038633           13 LLSRIFALSLLRCCSVGSAL--AQPFRDSFDTYEDDAGHE-LGGPISPSLL-QLKDLKYLDLSMNNFKGF-KVPEFIGSL   87 (176)
Q Consensus        13 ~~~~l~~l~l~~~~~~~~~~--~~~~~~~~l~~L~l~~n~-l~~~~~~~l~-~l~~L~~L~l~~~~~~~~-~~p~~~~~l   87 (176)
                      .++.+..++.++|.......  .--.+..+|+.|.+++++ ++...-..+. +...|+.+++..+...-. ++...-..+
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C  371 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC  371 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence            36677888888776533221  123566889999999884 5544334444 578899999988764421 122223367


Q ss_pred             CCccEEEeecccCCCCc-----chhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhh
Q 038633           88 KELRYLNLSGSFFSGTI-----PQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESIS  162 (176)
Q Consensus        88 ~~L~~L~l~~~~~~~~~-----p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  162 (176)
                      +.||.+.++.|......     ...-..+..+..+.+.+++.... .....+..+++|+.+++.+++-....+. ...-.
T Consensus       372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d-~~Le~l~~c~~Leri~l~~~q~vtk~~i-~~~~~  449 (483)
T KOG4341|consen  372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD-ATLEHLSICRNLERIELIDCQDVTKEAI-SRFAT  449 (483)
T ss_pred             chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH-HHHHHHhhCcccceeeeechhhhhhhhh-HHHHh
Confidence            88999999988653211     11223567788889998887422 2223367888999999888875433221 12335


Q ss_pred             ccccCcEe
Q 038633          163 MLRSLVEL  170 (176)
Q Consensus       163 ~~~~L~~L  170 (176)
                      ++|+++..
T Consensus       450 ~lp~i~v~  457 (483)
T KOG4341|consen  450 HLPNIKVH  457 (483)
T ss_pred             hCccceeh
Confidence            66666543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.98  E-value=0.0011  Score=47.07  Aligned_cols=83  Identities=19%  Similarity=0.024  Sum_probs=59.8

Q ss_pred             CCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEE
Q 038633           38 DSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYL  117 (176)
Q Consensus        38 ~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L  117 (176)
                      ....+.||++.|++- ....-|.-++.+..|+++.|.+.  ..|++++....++.+++..|..+ ..|..++..+.++++
T Consensus        41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~--~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK--FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN  116 (326)
T ss_pred             cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh--hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence            345667788877663 23344555667777788888777  57778877777788877777776 778778888888888


Q ss_pred             EccCCcc
Q 038633          118 DLNNFLD  124 (176)
Q Consensus       118 ~l~~n~~  124 (176)
                      +...+++
T Consensus       117 e~k~~~~  123 (326)
T KOG0473|consen  117 EQKKTEF  123 (326)
T ss_pred             hhccCcc
Confidence            8877776

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.96  E-value=0.056  Score=24.27  Aligned_cols=20  Identities=35%  Similarity=0.451  Sum_probs=14.7

Q ss_pred             CCCccEEeccCCCCCCchhh
Q 038633          137 LPSLKYLNLGGADLSKDAAY  156 (176)
Q Consensus       137 l~~L~~L~l~~n~l~~~~~~  156 (176)
                      +++|++|+|++|.+...++.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            35788888888888766553

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.96  E-value=0.056  Score=24.27  Aligned_cols=20  Identities=35%  Similarity=0.451  Sum_probs=14.7

Q ss_pred             CCCccEEeccCCCCCCchhh
Q 038633          137 LPSLKYLNLGGADLSKDAAY  156 (176)
Q Consensus       137 l~~L~~L~l~~n~l~~~~~~  156 (176)
                      +++|++|+|++|.+...++.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            35788888888888766553

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=93.50  E-value=0.024  Score=25.02  Aligned_cols=13  Identities=46%  Similarity=0.611  Sum_probs=4.9

Q ss_pred             CCcEEEccCcccc
Q 038633           64 DLKYLDLSMNNFK   76 (176)
Q Consensus        64 ~L~~L~l~~~~~~   76 (176)
                      +|++|++++|.+.
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            3444444444443

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.95  E-value=0.0022  Score=50.78  Aligned_cols=38  Identities=26%  Similarity=0.327  Sum_probs=17.0

Q ss_pred             CCccEEeccCCCCCCchhhh-HHHhhccccCcEeeCcCC
Q 038633          138 PSLKYLNLGGADLSKDAAYW-LESISMLRSLVELRLPNC  175 (176)
Q Consensus       138 ~~L~~L~l~~n~l~~~~~~~-~~~l~~~~~L~~L~l~~n  175 (176)
                      ..++++++..|.+.+..... ...+...+.++++.+..|
T Consensus       262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n  300 (478)
T KOG4308|consen  262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNN  300 (478)
T ss_pred             hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccC
Confidence            34455555555555433221 122333445555555444

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=91.76  E-value=0.0024  Score=50.57  Aligned_cols=159  Identities=21%  Similarity=0.111  Sum_probs=83.2

Q ss_pred             cceeeccCccccCCCC----cCcccCCcceEeecCCCCccccchhhhc----CC-CCCcEEEccCccccCC---cchhhh
Q 038633           17 IFALSLLRCCSVGSAL----AQPFRDSFDTYEDDAGHELGGPISPSLL----QL-KDLKYLDLSMNNFKGF---KVPEFI   84 (176)
Q Consensus        17 l~~l~l~~~~~~~~~~----~~~~~~~~l~~L~l~~n~l~~~~~~~l~----~l-~~L~~L~l~~~~~~~~---~~p~~~   84 (176)
                      +..+.+.+|.+.....    .......+++.|++++|.+.++....+.    .. ..+++|++..|.+...   .+.+.+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            5556666666643321    1335555666777777777644333322    22 3455666666655532   133445


Q ss_pred             cCcCCccEEEeecccCCC----Ccchhcc----CCCCCCEEEccCCccCccc--ccccccCCCCC-ccEEeccCCCCCCc
Q 038633           85 GSLKELRYLNLSGSFFSG----TIPQSLG----NLTNLLYLDLNNFLDQSNQ--IGLGWLSGLPS-LKYLNLGGADLSKD  153 (176)
Q Consensus        85 ~~l~~L~~L~l~~~~~~~----~~p~~~~----~l~~L~~L~l~~n~~~~~~--~~~~~~~~l~~-L~~L~l~~n~l~~~  153 (176)
                      .....++.++++.|.+..    ..+..+.    ...++++|.+.+|.+....  ....++...++ +..+++..|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            456677777777776631    1222222    3566777777777663111  11122444444 55677778777654


Q ss_pred             hhhh-HHHhhcc-ccCcEeeCcCC
Q 038633          154 AAYW-LESISML-RSLVELRLPNC  175 (176)
Q Consensus       154 ~~~~-~~~l~~~-~~L~~L~l~~n  175 (176)
                      ..+. ...+..+ ..+++++++.|
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~n  272 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRN  272 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcC
Confidence            2221 1223334 45677777665

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.50  E-value=0.0037  Score=44.56  Aligned_cols=89  Identities=16%  Similarity=0.119  Sum_probs=71.3

Q ss_pred             hhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCC
Q 038633           57 PSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSG  136 (176)
Q Consensus        57 ~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~  136 (176)
                      ..+....+.+.||++.|...  ..-..++-++.+..|+++.|++. ..|+.++....+.+++...|..+..+.   .+..
T Consensus        36 ~ei~~~kr~tvld~~s~r~v--n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~---s~~k  109 (326)
T KOG0473|consen   36 REIASFKRVTVLDLSSNRLV--NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPK---SQKK  109 (326)
T ss_pred             hhhhccceeeeehhhhhHHH--hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCc---cccc
Confidence            34566788899999999877  45566777889999999999997 889888888889999998887754444   3778


Q ss_pred             CCCccEEeccCCCCC
Q 038633          137 LPSLKYLNLGGADLS  151 (176)
Q Consensus       137 l~~L~~L~l~~n~l~  151 (176)
                      .+.++.+++-+|.+.
T Consensus       110 ~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  110 EPHPKKNEQKKTEFF  124 (326)
T ss_pred             cCCcchhhhccCcch
Confidence            889999999888754

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=87.71  E-value=0.54  Score=37.78  Aligned_cols=66  Identities=24%  Similarity=0.139  Sum_probs=37.8

Q ss_pred             CcCCccEEEeecccCCCC--cchhccCCCCCCEEEccCC--ccCcccccccccCCCCCccEEeccCCCCCCc
Q 038633           86 SLKELRYLNLSGSFFSGT--IPQSLGNLTNLLYLDLNNF--LDQSNQIGLGWLSGLPSLKYLNLGGADLSKD  153 (176)
Q Consensus        86 ~l~~L~~L~l~~~~~~~~--~p~~~~~l~~L~~L~l~~n--~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  153 (176)
                      ..+.+..+.+++|++...  +.......|+|..|+|++|  .+....... .+.. ..|++|-+.||.+...
T Consensus       216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~-K~k~-l~Leel~l~GNPlc~t  285 (585)
T KOG3763|consen  216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELD-KLKG-LPLEELVLEGNPLCTT  285 (585)
T ss_pred             CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhh-hhcC-CCHHHeeecCCccccc
Confidence            346677777888877521  1122234577888888888  333222211 1222 2477788888887654

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=86.64  E-value=0.5  Score=21.65  Aligned_cols=12  Identities=25%  Similarity=0.155  Sum_probs=6.0

Q ss_pred             ceEeecCCCCcc
Q 038633           41 DTYEDDAGHELG   52 (176)
Q Consensus        41 l~~L~l~~n~l~   52 (176)
                      |++|+|++|.+.
T Consensus         4 L~~LdL~~N~i~   15 (28)
T smart00368        4 LRELDLSNNKLG   15 (28)
T ss_pred             cCEEECCCCCCC
Confidence            444555555544

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=84.22  E-value=1.1  Score=20.31  Aligned_cols=16  Identities=31%  Similarity=0.488  Sum_probs=12.4

Q ss_pred             CCCccEEeccCCCCCC
Q 038633          137 LPSLKYLNLGGADLSK  152 (176)
Q Consensus       137 l~~L~~L~l~~n~l~~  152 (176)
                      +.+|+.|+++.|.+..
T Consensus         1 L~~L~~L~L~~NkI~~   16 (26)
T smart00365        1 LTNLEELDLSQNKIKK   16 (26)
T ss_pred             CCccCEEECCCCccce
Confidence            3578889999998863

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=82.14  E-value=0.9  Score=20.56  Aligned_cols=17  Identities=29%  Similarity=0.624  Sum_probs=10.3

Q ss_pred             CccEEEeecccCCCCcch
Q 038633           89 ELRYLNLSGSFFSGTIPQ  106 (176)
Q Consensus        89 ~L~~L~l~~~~~~~~~p~  106 (176)
                      +|+.|++++|++. .+|+
T Consensus         3 ~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             ccceeecCCCccc-cCcc
Confidence            4666666666665 5554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	176
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-18
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-15
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-14
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-13
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-13
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	8e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	9e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 95.0 bits (237), Expect = 2e-23
 Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 7/131 (5%)

Query: 49  HELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIP--Q 106
           +     +S SLL L  L+ L LS ++  G  V  F      L  L+LS +  SG +    
Sbjct: 63  NVGFSAVSSSLLSLTGLESLFLSNSHING-SVSGF-KCSASLTSLDLSRNSLSGPVTTLT 120

Query: 107 SLGNLTNLLYLDL-NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLR 165
           SLG+ + L +L++ +N L       +     L SL+ L+L    +S              
Sbjct: 121 SLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 178

Query: 166 SLVELRLPNCN 176
            L  L +    
Sbjct: 179 ELKHLAISGNK 189

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 78.8 bits (195), Expect = 9e-18
 Identities = 43/128 (33%), Positives = 62/128 (48%), Gaps = 9/128 (7%)

Query: 51  LGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGN 110
             GPI P    LK L+YL L+ N F G       G+   L  L+LSG+ F G +P   G+
Sbjct: 259 FVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316

Query: 111 LTNLLYLDL--NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLV 168
            + L  L L  NNF   S ++ +  L  +  LK L+L   + S +    L ++S   SL+
Sbjct: 317 CSLLESLALSSNNF---SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA--SLL 371

Query: 169 ELRLPNCN 176
            L L + N
Sbjct: 372 TLDLSSNN 379

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 75.7 bits (187), Expect = 1e-16
 Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 5/105 (4%)

Query: 42  TYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFS 101
              +      GG  SP+      + +LD+S N   G  +P+ IGS+  L  LNL  +  S
Sbjct: 611 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG-YIPKEIGSMPYLFILNLGHNDIS 669

Query: 102 GTIPQSLGNLTNLLYLDL-NNFLDQSNQIGLGWLSGLPSLKYLNL 145
           G+IP  +G+L  L  LDL +N L    +I    +S L  L  ++L
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKL--DGRIPQA-MSALTMLTEIDL 711

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 71.5 bits (176), Expect = 3e-15
 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 51  LGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGN 110
           L G I   L    +L ++ LS N   G ++P++IG L+ L  L LS + FSG IP  LG+
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTG-EIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536

Query: 111 LTNLLYLDLNN 121
             +L++LDLN 
Sbjct: 537 CRSLIWLDLNT 547

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 71.5 bits (176), Expect = 4e-15
 Identities = 32/128 (25%), Positives = 62/128 (48%), Gaps = 12/128 (9%)

Query: 50  ELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLG 109
           ++ G +   + +  +L++LD+S NNF    +P  +G    L++L++SG+  SG   +++ 
Sbjct: 189 KISGDVD--VSRCVNLEFLDVSSNNFST-GIPF-LGDCSALQHLDISGNKLSGDFSRAIS 244

Query: 110 NLTNLLYLDLNNFLDQSNQI-GLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLV 168
             T L  L++++     NQ  G      L SL+YL+L     + +   +L       +L 
Sbjct: 245 TCTELKLLNISS-----NQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFL--SGACDTLT 297

Query: 169 ELRLPNCN 176
            L L   +
Sbjct: 298 GLDLSGNH 305

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 71.1 bits (175), Expect = 4e-15
 Identities = 26/132 (19%), Positives = 48/132 (36%), Gaps = 15/132 (11%)

Query: 51  LGGPISP--SLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSL 108
           L GP++   SL     LK+L++S N             L  L  L+LS +  SG      
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW 171

Query: 109 ---GNLTNLLYLDL-NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISML 164
                   L +L +  N +  S  + +       +L++L++   + S      +  +   
Sbjct: 172 VLSDGCGELKHLAISGNKI--SGDVDVS---RCVNLEFLDVSSNNFSTG----IPFLGDC 222

Query: 165 RSLVELRLPNCN 176
            +L  L +    
Sbjct: 223 SALQHLDISGNK 234

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 71.1 bits (175), Expect = 4e-15
 Identities = 36/101 (35%), Positives = 50/101 (49%), Gaps = 9/101 (8%)

Query: 51  LGGPISPSL--LQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSL 108
             GPI P+L       L+ L L  N F G K+P  + +  EL  L+LS ++ SGTIP SL
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFTG-KIPPTLSNCSELVSLHLSFNYLSGTIPSSL 438

Query: 109 GNLTNLLYLDL--NNFLDQSNQIGLGWLSGLPSLKYLNLGG 147
           G+L+ L  L L  N       +I    L  + +L+ L L  
Sbjct: 439 GSLSKLRDLKLWLNML---EGEI-PQELMYVKTLETLILDF 475

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 68.8 bits (169), Expect = 2e-14
 Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 3/119 (2%)

Query: 51  LGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGN 110
             G + P       L+ L LS NNF G    + +  ++ L+ L+LS + FSG +P+SL N
Sbjct: 306 FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN 365

Query: 111 LT-NLLYLDL-NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSL 167
           L+ +LL LDL +N         L       +L+ L L     +      L + S L SL
Sbjct: 366 LSASLLTLDLSSNNFSGPILPNLCQNP-KNTLQELYLQNNGFTGKIPPTLSNCSELVSL 423

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.1 bits (136), Expect = 6e-10
 Identities = 28/140 (20%), Positives = 51/140 (36%), Gaps = 24/140 (17%)

Query: 53  GPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIP------- 105
           G I   + +L++L  L LS N+F G  +P  +G  + L +L+L+ + F+GTIP       
Sbjct: 504 GEIPKWIGRLENLAILKLSNNSFSG-NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 562

Query: 106 -------------QSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSK 152
                          + N            L +   I    L+ L +    N+       
Sbjct: 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622

Query: 153 DAAYWLESISMLRSLVELRL 172
              +   +     S++ L +
Sbjct: 623 ---HTSPTFDNNGSMMFLDM 639

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 51  LGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQS 107
           + G I   +  L+ L  LDLS N   G ++P+ + +L  L  ++LS +  SG IP+ 
Sbjct: 668 ISGSIPDEVGDLRGLNILDLSSNKLDG-RIPQAMSALTMLTEIDLSNNNLSGPIPEM 723

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 17/94 (18%), Positives = 30/94 (31%), Gaps = 8/94 (8%)

Query: 85  GSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDL--NNFLDQSNQIGLGWLSGLPSLKY 142
             +  +   +   +     +  SL +LT L  L L  ++         +       SL  
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGS-----VSGFKCSASLTS 104

Query: 143 LNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176
           L+L    LS      L S+     L  L + +  
Sbjct: 105 LDLSRNSLS-GPVTTLTSLGSCSGLKFLNVSSNT 137

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 79.1 bits (196), Expect = 2e-18
 Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 8/104 (7%)

Query: 51  LGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGN 110
           L GPI P++ +L  L YL ++  N  G  +P+F+  +K L  L+ S +  SGT+P S+ +
Sbjct: 89  LVGPIPPAIAKLTQLHYLYITHTNVSG-AIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147

Query: 111 LTNLLYLDL-NNFLDQSNQI--GLGWLSGLPSLKYLNLGGADLS 151
           L NL+ +    N +  S  I    G  S L     + +    L+
Sbjct: 148 LPNLVGITFDGNRI--SGAIPDSYGSFSKL--FTSMTISRNRLT 187

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 71.4 bits (176), Expect = 2e-15
 Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 6/101 (5%)

Query: 53  GPISPSLLQLKDLKYLDLS-MNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNL 111
            PI  SL  L  L +L +  +NN  G  +P  I  L +L YL ++ +  SG IP  L  +
Sbjct: 66  YPIPSSLANLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124

Query: 112 TNLLYLDL-NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLS 151
             L+ LD   N L  S  +    +S LP+L  +   G  +S
Sbjct: 125 KTLVTLDFSYNAL--SGTL-PPSISSLPNLVGITFDGNRIS 162

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 69.1 bits (170), Expect = 1e-14
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 4/74 (5%)

Query: 51  LGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGN 110
           L G  S      K+ + + L+ N+     + + +G  K L  L+L  +   GT+PQ L  
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAF-DLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQ 266

Query: 111 LTNLLYLDL--NNF 122
           L  L  L++  NN 
Sbjct: 267 LKFLHSLNVSFNNL 280

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 65.2 bits (160), Expect = 3e-13
 Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 13/125 (10%)

Query: 53  GPISPSLLQLKDLKYLDLSMNNFKG-FKVPEFIGSLKELRYLNLSGS-FFSGTIPQSLGN 110
           G +  +  Q   +  LDLS  N    + +P  + +L  L +L + G     G IP ++  
Sbjct: 40  GVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK 99

Query: 111 LTNLLYLDLNNFLDQSNQI-GL--GWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSL 167
           LT L YL + +       + G    +LS + +L  L+     LS        SIS L +L
Sbjct: 100 LTQLHYLYITH-----TNVSGAIPDFLSQIKTLVTLDFSYNALSGT---LPPSISSLPNL 151

Query: 168 VELRL 172
           V +  
Sbjct: 152 VGITF 156

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 64.9 bits (159), Expect = 4e-13
 Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 8/103 (7%)

Query: 51  LGGPISPSLLQLKDL-KYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLG 109
           + G I  S      L   + +S N   G K+P    +L  L +++LS +   G      G
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTG-KIPPTFANLN-LAFVDLSRNMLEGDASVLFG 218

Query: 110 NLTNLLYLDL-NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLS 151
           +  N   + L  N L       LG +    +L  L+L    + 
Sbjct: 219 SDKNTQKIHLAKNSLAFD----LGKVGLSKNLNGLDLRNNRIY 257

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 61.8 bits (151), Expect = 5e-12
 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 5/75 (6%)

Query: 51  LGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGN 110
           L   +   +   K+L  LDL  N   G  +P+ +  LK L  LN+S +   G IPQ  GN
Sbjct: 233 LAFDL-GKVGLSKNLNGLDLRNNRIYG-TLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GN 289

Query: 111 LTNLLYLDL--NNFL 123
           L          N  L
Sbjct: 290 LQRFDVSAYANNKCL 304

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 43.7 bits (104), Expect = 8e-06
 Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 15/115 (13%)

Query: 68  LDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGT--IPQSLGNLTNLLYLDLNNFLDQ 125
            D     + G  + +       +  L+LSG        IP SL NL  L +L +    + 
Sbjct: 31  TDCCNRTWLG-VLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 126 SNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWL----ESISMLRSLVELRLPNCN 176
              I    ++ L  L YL +   ++S           + +S +++LV L      
Sbjct: 90  VGPIPPA-IAKLTQLHYLYITHTNVS-------GAIPDFLSQIKTLVTLDFSYNA 136

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 68.1 bits (167), Expect = 5e-14
 Identities = 23/118 (19%), Positives = 43/118 (36%), Gaps = 2/118 (1%)

Query: 51  LGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGN 110
           +    S +   L  L+ LDL +N        +    L+ +  + LS + +      S   
Sbjct: 393 ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL 452

Query: 111 LTNLLYLDL-NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSL 167
           + +L  L L    L ++          L +L  L+L   +++      LE +  L  L
Sbjct: 453 VPSLQRLMLRRVAL-KNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEIL 509

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.6 bits (163), Expect = 2e-13
 Identities = 32/128 (25%), Positives = 49/128 (38%), Gaps = 3/128 (2%)

Query: 51  LGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEF-IGSLKELRYLNLSGSFFSGTIPQSLG 109
           L      + +QL++L+ L LS N  +  K  E  I +   L+ L LS +      P    
Sbjct: 133 LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH 192

Query: 110 NLTNLLYLDL-NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLV 168
            +  L  L L N  L  S    L       S++ L+L  + LS  +      +    +L 
Sbjct: 193 AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK-WTNLT 251

Query: 169 ELRLPNCN 176
            L L   N
Sbjct: 252 MLDLSYNN 259

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.7 bits (153), Expect = 3e-12
 Identities = 20/118 (16%), Positives = 42/118 (35%), Gaps = 12/118 (10%)

Query: 62  LKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNN 121
             ++  L+L+ N  +      F     +L  L++  +  S   P+    L  L  L+L +
Sbjct: 24  PTNITVLNLTHNQLRRLPAANF-TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82

Query: 122 FLDQSNQIGL---GWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176
                N++        +   +L  L+L    + K            ++L+ L L +  
Sbjct: 83  -----NELSQLSDKTFAFCTNLTELHLMSNSIQKIKN---NPFVKQKNLITLDLSHNG 132

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.3 bits (152), Expect = 4e-12
 Identities = 32/127 (25%), Positives = 48/127 (37%), Gaps = 8/127 (6%)

Query: 51  LGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGN 110
           L    + +  +   L  LD+  N     + PE    L  L+ LNL  +  S    ++   
Sbjct: 37  LRRLPAANFTRYSQLTSLDVGFNTISKLE-PELCQKLPMLKVLNLQHNELSQLSDKTFAF 95

Query: 111 LTNLLYLDL-NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVE 169
            TNL  L L +N +    +I         +L  L+L    LS      L +   L +L E
Sbjct: 96  CTNLTELHLMSNSI---QKIKNNPFVKQKNLITLDLSHNGLSSTK---LGTQVQLENLQE 149

Query: 170 LRLPNCN 176
           L L N  
Sbjct: 150 LLLSNNK 156

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.9 bits (151), Expect = 6e-12
 Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 6/128 (4%)

Query: 50  ELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLG 109
            +         +L  LK L+L  N        +       L  L+L  +           
Sbjct: 60  TISKLEPELCQKLPMLKVLNLQHNELSQLS-DKTFAFCTNLTELHLMSNSIQKIKNNPFV 118

Query: 110 NLTNLLYLDL-NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLV 168
              NL+ LDL +N L   +   LG    L +L+ L L    +    +  L+  +   SL 
Sbjct: 119 KQKNLITLDLSHNGL---SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA-NSSLK 174

Query: 169 ELRLPNCN 176
           +L L +  
Sbjct: 175 KLELSSNQ 182

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.4 bits (147), Expect = 2e-11
 Identities = 30/129 (23%), Positives = 42/129 (32%), Gaps = 10/129 (7%)

Query: 51  LGGPISPSLLQLKDLKYLDLSMNNFKGF-KVPEFIGSLKELRYLNLSGSFFSGTIPQSLG 109
                  S   +  L+ L L     K     P     L+ L  L+LS +  +      L 
Sbjct: 442 YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501

Query: 110 NLTNLLYLDL-NNFL-----DQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISM 163
            L  L  LDL +N L       +    + +L GL  L  LNL      +      E    
Sbjct: 502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV---EVFKD 558

Query: 164 LRSLVELRL 172
           L  L  + L
Sbjct: 559 LFELKIIDL 567

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 59.6 bits (145), Expect = 4e-11
 Identities = 25/121 (20%), Positives = 42/121 (34%), Gaps = 6/121 (4%)

Query: 51  LGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGS---LKELRYLNLSGSFFSGTIPQS 107
           + G  S     L +LKYL LS +      +            L  LNL+ +  S     +
Sbjct: 341 IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA 400

Query: 108 LGNLTNLLYLDL-NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRS 166
              L +L  LDL  N +    ++      GL ++  + L      +        +  L+ 
Sbjct: 401 FSWLGHLEVLDLGLNEI--GQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQR 458

Query: 167 L 167
           L
Sbjct: 459 L 459

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 59.6 bits (145), Expect = 4e-11
 Identities = 32/120 (26%), Positives = 48/120 (40%), Gaps = 11/120 (9%)

Query: 60  LQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDL 119
           L+  +L  LDLS NN       +    L +L Y  L  +        SL  L N+ YL+L
Sbjct: 245 LKWTNLTMLDLSYNNLNVVG-NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 303

Query: 120 -NNFLDQS------NQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRL 172
             +F  QS       +I       L  L++LN+   D+    +      + L +L  L L
Sbjct: 304 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS---NMFTGLINLKYLSL 360

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.8 bits (135), Expect = 8e-10
 Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 4/100 (4%)

Query: 49  HELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSL 108
           H   G     L  L  L  L+L  N F      E    L EL+ ++L  +  +       
Sbjct: 522 HANPGGPIYFLKGLSHLHILNLESNGFDEIP-VEVFKDLFELKIIDLGLNNLNTLPASVF 580

Query: 109 GNLTNLLYLDL-NNFLDQSNQIGLGWLSGLPSLKYLNLGG 147
            N  +L  L+L  N +    +   G      +L  L++  
Sbjct: 581 NNQVSLKSLNLQKNLITSVEKKVFG--PAFRNLTELDMRF 618

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.4 bits (134), Expect = 1e-09
 Identities = 33/132 (25%), Positives = 48/132 (36%), Gaps = 13/132 (9%)

Query: 51  LGGPISPSLLQLKDLKYLDLSMNNFKGFKV--------PEFIGSLKELRYLNLSGSFFSG 102
           +    S SL  L +++YL+L  +  K                  LK L +LN+  +   G
Sbjct: 284 IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343

Query: 103 TIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLP--SLKYLNLGGADLSKDAAYWLES 160
                   L NL YL L+N       +       L    L  LNL    +SK  +   ++
Sbjct: 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES---DA 400

Query: 161 ISMLRSLVELRL 172
            S L  L  L L
Sbjct: 401 FSWLGHLEVLDL 412

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 14/126 (11%)

Query: 52  GGPISPSLLQ-LKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSG--------SFFSG 102
               SPS  Q L++L  LDLS NN       + +  L++L  L+L              G
Sbjct: 468 NVDSSPSPFQPLRNLTILDLSNNNIANIN-DDMLEGLEKLEILDLQHNNLARLWKHANPG 526

Query: 103 TIPQSLGNLTNLLYLDL-NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESI 161
                L  L++L  L+L +N  D+   I +     L  LK ++LG  +L+   A    + 
Sbjct: 527 GPIYFLKGLSHLHILNLESNGFDE---IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQ 583

Query: 162 SMLRSL 167
             L+SL
Sbjct: 584 VSLKSL 589

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 52.7 bits (127), Expect = 8e-09
 Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 11/113 (9%)

Query: 65  LKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDL-NNFL 123
            +  D S       +VP+ +     +  LNL+ +        +    + L  LD+  N +
Sbjct: 6   HEVADCSHLKLT--QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 124 DQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176
              +++       LP LK LNL   +LS+ +    ++ +   +L EL L + +
Sbjct: 62  ---SKLEPELCQKLPMLKVLNLQHNELSQLSD---KTFAFCTNLTELHLMSNS 108

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 67.7 bits (166), Expect = 5e-14
 Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 8/120 (6%)

Query: 55  ISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNL 114
           +S + L L+ L++LD   +N K         SL+ L YL++S +            L++L
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447

Query: 115 LYLDL--NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRL 172
             L +  N+F +          + L +L +L+L    L + +     + + L SL  L +
Sbjct: 448 EVLKMAGNSFQE---NFLPDIFTELRNLTFLDLSQCQLEQLSP---TAFNSLSSLQVLNM 501

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 67.0 bits (164), Expect = 1e-13
 Identities = 20/96 (20%), Positives = 41/96 (42%), Gaps = 4/96 (4%)

Query: 51  LGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGN 110
                +     L  L+ L ++ N+F+   +P+    L+ L +L+LS        P +  +
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492

Query: 111 LTNLLYLDL-NNFLDQSNQIGLGWLSGLPSLKYLNL 145
           L++L  L++ +N       +       L SL+ L+ 
Sbjct: 493 LSSLQVLNMSHNNF---FSLDTFPYKCLNSLQVLDY 525

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 64.7 bits (158), Expect = 7e-13
 Identities = 29/127 (22%), Positives = 45/127 (35%), Gaps = 7/127 (5%)

Query: 51  LGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGN 110
           L    S S     +L+ LDLS    +         SL  L  L L+G+        +   
Sbjct: 40  LRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98

Query: 111 LTNLLYLDL-NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVE 169
           L++L  L      L     +    +  L +LK LN+    +   +    E  S L +L  
Sbjct: 99  LSSLQKLVAVETNL---ASLENFPIGHLKTLKELNVAHNLIQ--SFKLPEYFSNLTNLEH 153

Query: 170 LRLPNCN 176
           L L +  
Sbjct: 154 LDLSSNK 160

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.7 bits (153), Expect = 3e-12
 Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 9/126 (7%)

Query: 53  GPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQS-LGNL 111
           G  S S      LKYLDLS N      +      L++L +L+   S        S   +L
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420

Query: 112 TNLLYLDL-NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVEL 170
            NL+YLD+ +     +     G  +GL SL+ L + G    ++     +  + LR+L  L
Sbjct: 421 RNLIYLDISHTHTRVAFN---GIFNGLSSLEVLKMAGNSFQENFLP--DIFTELRNLTFL 475

Query: 171 RLPNCN 176
            L  C 
Sbjct: 476 DLSQCQ 481

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.4 bits (152), Expect = 4e-12
 Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 5/124 (4%)

Query: 51  LGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGN 110
           L    +  +  LK LK L+++ N  + FK+PE+  +L  L +L+LS +         L  
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 111 LTNL--LYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLV 168
           L  +  L L L+  L+  N I  G    +  L  L L     S +       I  L  L 
Sbjct: 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMK--TCIQGLAGLE 228

Query: 169 ELRL 172
             RL
Sbjct: 229 VHRL 232

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.8 bits (148), Expect = 1e-11
 Identities = 23/119 (19%), Positives = 46/119 (38%), Gaps = 4/119 (3%)

Query: 50  ELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLG 109
           E+      +   L  L  L L+ N  +          L  L+ L    +  +      +G
Sbjct: 63  EIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIG 121

Query: 110 NLTNLLYLDL-NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSL 167
           +L  L  L++ +N + QS ++   + S L +L++L+L    +       L  +  +  L
Sbjct: 122 HLKTLKELNVAHNLI-QSFKLP-EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.8 bits (135), Expect = 7e-10
 Identities = 24/129 (18%), Positives = 38/129 (29%), Gaps = 12/129 (9%)

Query: 55  ISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGT------IPQSL 108
           I P   +   L  L L  N      +   I  L  L    L    F            +L
Sbjct: 192 IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251

Query: 109 GNLTNLLYLDLN-NFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSL 167
             L NL   +    +LD      +   + L ++   +L    + +     ++  S     
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-----VKDFSYNFGW 306

Query: 168 VELRLPNCN 176
             L L NC 
Sbjct: 307 QHLELVNCK 315

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 26/120 (21%), Positives = 40/120 (33%), Gaps = 10/120 (8%)

Query: 57  PSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLY 116
                    ++L+L    F  F     + SLK L + +  G         S  +L +L +
Sbjct: 298 KDFSYNFGWQHLELVNCKFGQF-PTLKLKSLKRLTFTSNKGG-----NAFSEVDLPSLEF 351

Query: 117 LDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176
           LDL+               G  SLKYL+L    +         +   L  L  L   + N
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM----SSNFLGLEQLEHLDFQHSN 407

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.3 bits (113), Expect = 6e-07
 Identities = 27/121 (22%), Positives = 42/121 (34%), Gaps = 12/121 (9%)

Query: 57  PSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLY 116
           P +  + ++ Y      NF  +K+P+ +      + L+LS +        S  +   L  
Sbjct: 2   PCVEVVPNITY-QCMELNF--YKIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQV 56

Query: 117 LDL-NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNC 175
           LDL    +     I  G    L  L  L L G  +   A         L SL +L     
Sbjct: 57  LDLSRCEI---QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG---LSSLQKLVAVET 110

Query: 176 N 176
           N
Sbjct: 111 N 111

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 19/113 (16%), Positives = 34/113 (30%), Gaps = 12/113 (10%)

Query: 60  LQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDL 119
           L    ++   L+  ++    + +    L  +   +L           S        +L+L
Sbjct: 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHLEL 311

Query: 120 NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRL 172
            N   +  Q     L  L  L + +  G +          S   L SL  L L
Sbjct: 312 VNC--KFGQFPTLKLKSLKRLTFTSNKGGNAF--------SEVDLPSLEFLDL 354

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 66.6 bits (163), Expect = 1e-13
 Identities = 18/123 (14%), Positives = 41/123 (33%), Gaps = 7/123 (5%)

Query: 51  LGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGN 110
                       + ++ + +  NN K F V   +  +K+L  L    +   G +P + G+
Sbjct: 293 DDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS 351

Query: 111 LTNLLYLDL-NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVE 169
              L  L+L  N +    +I   +      ++ L+     L      +      +  +  
Sbjct: 352 EIKLASLNLAYNQI---TEIPANFCGFTEQVENLSFAHNKLKYIPNIF--DAKSVSVMSA 406

Query: 170 LRL 172
           +  
Sbjct: 407 IDF 409

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 64.7 bits (158), Expect = 8e-13
 Identities = 21/103 (20%), Positives = 33/103 (32%), Gaps = 5/103 (4%)

Query: 49  HELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSL 108
                  + +      L  +DL  N            +L  L  ++LS + FS   P   
Sbjct: 474 KNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQP 532

Query: 109 GNLTNLLYLDLNNFLDQSNQIGLG----WLSGLPSLKYLNLGG 147
            N + L    + N  D      L      ++  PSL  L +G 
Sbjct: 533 LNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS 575

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.7 bits (145), Expect = 3e-11
 Identities = 25/131 (19%), Positives = 44/131 (33%), Gaps = 17/131 (12%)

Query: 53  GPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSG-------TIP 105
            P+ P+  +  ++  ++LS N    F   E   +   L  +NL G+  +           
Sbjct: 423 DPLDPTPFKGINVSSINLSNNQISKF-PKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN 481

Query: 106 QSLGNLTNLLYLDL--NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISM 163
           ++  N   L  +DL  N     S+         LP L  ++L     SK           
Sbjct: 482 ENFKNTYLLTSIDLRFNKLTKLSDDFRAT---TLPYLVGIDLSYNSFSKFP----TQPLN 534

Query: 164 LRSLVELRLPN 174
             +L    + N
Sbjct: 535 SSTLKGFGIRN 545

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.7 bits (145), Expect = 4e-11
 Identities = 13/105 (12%), Positives = 27/105 (25%), Gaps = 11/105 (10%)

Query: 54  PISPSLLQLKDLKYLDLSMNNFKGF------KVPEFIGSLKELRYLNLSGSFFSGTIPQS 107
           P       +  +  +D S N            +         +  +NLS +  S    + 
Sbjct: 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL 452

Query: 108 LGNLTNLLYLDLNN-----FLDQSNQIGLGWLSGLPSLKYLNLGG 147
               + L  ++L           S +           L  ++L  
Sbjct: 453 FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRF 497

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 14/105 (13%), Positives = 36/105 (34%), Gaps = 15/105 (14%)

Query: 53  GPISPSLLQLKDLKYLDLSMNNFKG-------FKVPEFIGSLKELRYLNLSG-SFFSGTI 104
             +   L  L +++ ++++ N           ++        ++++ + +   +  +  +
Sbjct: 263 TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPV 322

Query: 105 PQSLGNLTNLLYLDLNNFLDQSNQI--GLGWLSGLPSLKYLNLGG 147
             SL  +  L  L+        NQ+   L        L  LNL  
Sbjct: 323 ETSLQKMKKLGMLECLY-----NQLEGKLPAFGSEIKLASLNLAY 362

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.7 bits (140), Expect = 1e-10
 Identities = 16/135 (11%), Positives = 28/135 (20%), Gaps = 12/135 (8%)

Query: 42  TYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFS 101
             +          I  S         +    NN     V + +  L +LR   +  S F 
Sbjct: 162 IKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF--VSKAVMRLTKLRQFYMGNSPFV 219

Query: 102 GTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESI 161
                      N  Y       D            L  L  + +               +
Sbjct: 220 AENICEAWENENSEYAQQYKTEDLK-------WDNLKDLTDVEVYNCPNLTKLP---TFL 269

Query: 162 SMLRSLVELRLPNCN 176
             L  +  + +    
Sbjct: 270 KALPEMQLINVACNR 284

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.0 bits (138), Expect = 3e-10
 Identities = 21/137 (15%), Positives = 44/137 (32%), Gaps = 20/137 (14%)

Query: 55  ISPSLLQ-LKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSG-------TIPQ 106
           I  +     + ++ L  + N  K         S+  +  ++ S +            +  
Sbjct: 368 IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427

Query: 107 SLGNLTNLLYLDLNNFLDQSNQIG---LGWLSGLPSLKYLNLGG---ADLSKDAAYWL-E 159
           +     N+  ++L+N     NQI        S    L  +NL G    ++ K++     E
Sbjct: 428 TPFKGINVSSINLSN-----NQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE 482

Query: 160 SISMLRSLVELRLPNCN 176
           +      L  + L    
Sbjct: 483 NFKNTYLLTSIDLRFNK 499

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 54.3 bits (131), Expect = 3e-09
 Identities = 20/123 (16%), Positives = 33/123 (26%), Gaps = 8/123 (6%)

Query: 58  SLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSG----TIPQSLGNLTN 113
           SL     +  L L      G +VP+ IG L EL  L L             P+ +    +
Sbjct: 76  SLNSNGRVTGLSLEGFGASG-RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMS 134

Query: 114 LLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLP 173
                      Q   +          L    +      K      +S  +     ++   
Sbjct: 135 DEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQK---SIKKSSRITLKDTQIGQL 191

Query: 174 NCN 176
           + N
Sbjct: 192 SNN 194

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.1 bits (128), Expect = 7e-09
 Identities = 13/129 (10%), Positives = 33/129 (25%), Gaps = 7/129 (5%)

Query: 51  LGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGN 110
             G +  ++ QL +L+ L L  +  K  +       +                    +  
Sbjct: 93  ASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDY 152

Query: 111 LTNLLYLDLNNFLDQSNQIGLGWLSG---LPSLKYLNLGGADLSKDAAYWLESISMLRSL 167
                + DL      S+                  +     +++       +++  L  L
Sbjct: 153 DPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF----VSKAVMRLTKL 208

Query: 168 VELRLPNCN 176
            +  + N  
Sbjct: 209 RQFYMGNSP 217

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 21/132 (15%), Positives = 39/132 (29%), Gaps = 13/132 (9%)

Query: 51  LGGPISPSLLQLKDLKYLDLSMNNFKGF------KVPEFIGSLKELRYLNLSGSFFSGTI 104
           +             L  ++L  N              E   +   L  ++L  +  +   
Sbjct: 445 ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLS 504

Query: 105 PQ-SLGNLTNLLYLDL-NNFLDQ-SNQIG-LGWLSGLPSLKYLNLGGADLSKDAAYWLES 160
                  L  L+ +DL  N   +   Q      L G       +  G    +    W E 
Sbjct: 505 DDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLR---EWPEG 561

Query: 161 ISMLRSLVELRL 172
           I++  SL +L++
Sbjct: 562 ITLCPSLTQLQI 573

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 18/119 (15%), Positives = 31/119 (26%), Gaps = 34/119 (28%)

Query: 54  PISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYL------NLSGSFFSGTIPQS 107
                   L  L  +DLS N+F  F  P    +   L+        +  G+      P+ 
Sbjct: 504 SDDFRATTLPYLVGIDLSYNSFSKF--PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG 561

Query: 108 LGNLT---------------------NLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNL 145
           +                         N+  LD+ +     N      LS +       +
Sbjct: 562 ITLCPSLTQLQIGSNDIRKVNEKITPNISVLDIKD-----NPNISIDLSYVCPYIEAGM 615

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 8/68 (11%), Positives = 17/68 (25%), Gaps = 4/68 (5%)

Query: 53  GPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLT 112
                 +     L  L +  N+ +   V E I     +  L++  +         +    
Sbjct: 556 REWPEGITLCPSLTQLQIGSNDIRK--VNEKI--TPNISVLDIKDNPNISIDLSYVCPYI 611

Query: 113 NLLYLDLN 120
                 L 
Sbjct: 612 EAGMYMLF 619

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 65.0 bits (159), Expect = 5e-13
 Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 1/114 (0%)

Query: 55  ISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNL 114
            + +  +   L+ LDL+    K         +L  L+ LNLS S    +  Q    L  L
Sbjct: 392 KTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451

Query: 115 LYLDL-NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSL 167
            +L+L  N   + N      L  L  L+ L L   DLS    +   S+ M+  +
Sbjct: 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV 505

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 62.0 bits (151), Expect = 5e-12
 Identities = 37/126 (29%), Positives = 54/126 (42%), Gaps = 6/126 (4%)

Query: 53  GPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQS-LGNL 111
              +  L  L  L+ L+LS N     K  E      +L  L+L+ +       QS   NL
Sbjct: 366 DCCNLQLRNLSHLQSLNLSYNEPLSLK-TEAFKECPQLELLDLAFTRLKVKDAQSPFQNL 424

Query: 112 TNLLYLDL-NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVEL 170
             L  L+L ++ LD S++       GLP+L++LNL G    K       S+  L  L  L
Sbjct: 425 HLLKVLNLSHSLLDISSE---QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEIL 481

Query: 171 RLPNCN 176
            L  C+
Sbjct: 482 VLSFCD 487

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.3 bits (144), Expect = 5e-11
 Identities = 28/129 (21%), Positives = 42/129 (32%), Gaps = 8/129 (6%)

Query: 51  LGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSF--FSGTIPQSL 108
                  S      L +L +  N  +       + +L+ LR L+LS      S      L
Sbjct: 313 FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL 372

Query: 109 GNLTNLLYLDL-NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSL 167
            NL++L  L+L  N       +        P L+ L+L    L    A        L  L
Sbjct: 373 RNLSHLQSLNLSYNEP---LSLKTEAFKECPQLELLDLAFTRLKVKDAQSP--FQNLHLL 427

Query: 168 VELRLPNCN 176
             L L +  
Sbjct: 428 KVLNLSHSL 436

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 5/125 (4%)

Query: 45  DDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTI 104
           +   H      S +      L+ LDL+  +    ++P  +  L  L+ L LS + F    
Sbjct: 260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLS--ELPSGLVGLSTLKKLVLSANKFENLC 317

Query: 105 PQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSK--DAAYWLESIS 162
             S  N  +L +L +     +  ++G G L  L +L+ L+L   D+         L ++S
Sbjct: 318 QISASNFPSLTHLSIKG-NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS 376

Query: 163 MLRSL 167
            L+SL
Sbjct: 377 HLQSL 381

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 23/123 (18%), Positives = 39/123 (31%), Gaps = 8/123 (6%)

Query: 55  ISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNL 114
            + +  +L +L +LDL+          +   S   L  L L+ +        +L     L
Sbjct: 49  QNTTFSRLINLTFLDLTRCQIYWIH-EDTFQSQHRLDTLVLTANPLIFMAETALSGPKAL 107

Query: 115 LYLDL-NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLP 173
            +L      +   + I    L    +L+ L LG   +S      L        L  L   
Sbjct: 108 KHLFFIQTGI---SSIDFIPLHNQKTLESLYLGSNHISSIK---LPKGFPTEKLKVLDFQ 161

Query: 174 NCN 176
           N  
Sbjct: 162 NNA 164

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 57.3 bits (139), Expect = 2e-10
 Identities = 24/107 (22%), Positives = 37/107 (34%), Gaps = 5/107 (4%)

Query: 62  LKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDL-N 120
               + L+ S N     +   F   L  L +L+L+          +  +   L  L L  
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTF-SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90

Query: 121 NFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSL 167
           N L    +     LSG  +LK+L      +S      L +   L SL
Sbjct: 91  NPLIFMAE---TALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESL 134

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.8 bits (122), Expect = 4e-08
 Identities = 22/122 (18%), Positives = 35/122 (28%), Gaps = 11/122 (9%)

Query: 58  SLLQLKDLKYLDLSMNNFKGFKVPEFIGSLK-ELRYLNLSGSFFSGTIPQSLGNLTNLLY 116
               ++ L        + +      F G  +  +  +NL   +F      +    + L  
Sbjct: 223 KNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQE 282

Query: 117 LDLNNFLDQSNQIG--LGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPN 174
           LDL         +      L GL +LK L L              S S   SL  L +  
Sbjct: 283 LDLTA-----THLSELPSGLVGLSTLKKLVLSANKFENLCQI---SASNFPSLTHLSIKG 334

Query: 175 CN 176
             
Sbjct: 335 NT 336

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.8 bits (122), Expect = 5e-08
 Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 8/117 (6%)

Query: 55  ISPSLLQ-LKDLKYLDLSMNNFKGF--KVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNL 111
            S  L   L  L++L+L  N+F     +    + +L  L  L LS    S     +  +L
Sbjct: 440 SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL 499

Query: 112 TNLLYLDL-NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSL 167
             + ++DL +N L       +  LS L  + YLNL    +S      L  +S  R++
Sbjct: 500 KMMNHVDLSHNRL---TSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTI 552

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 11/130 (8%)

Query: 51  LGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGN 110
           +       L   K L+ L L  N+    K+P+     ++L+ L+   +       + + +
Sbjct: 117 ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP-TEKLKVLDFQNNAIHYLSKEDMSS 175

Query: 111 LTNL--LYLDLNNFLDQSNQIGL--GWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRS 166
           L     L L+LN      N I             + LN GG          L++ + ++S
Sbjct: 176 LQQATNLSLNLNG-----NDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNST-IQS 229

Query: 167 LVELRLPNCN 176
           L      + +
Sbjct: 230 LWLGTFEDMD 239

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 5/96 (5%)

Query: 51  LGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGN 110
           L      +L   K LK+L               + + K L  L L  +  S         
Sbjct: 93  LIFMAETALSGPKALKHLFFIQTGISSID-FIPLHNQKTLESLYLGSNHISSIKLPKGFP 151

Query: 111 LTNLLYLDL-NNFLDQSNQIGLGWLSGLPSLKYLNL 145
              L  LD  NN +   + +    +S L     L+L
Sbjct: 152 TEKLKVLDFQNNAI---HYLSKEDMSSLQQATNLSL 184

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.2 bits (105), Expect = 7e-06
 Identities = 21/124 (16%), Positives = 38/124 (30%), Gaps = 5/124 (4%)

Query: 51  LGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELR--YLNLSGSFFSGTIPQSL 108
           +     P     + LK LD   N        +   SL++     LNL+G+  +  I    
Sbjct: 141 ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDM-SSLQQATNLSLNLNGNDIA-GIEPGA 198

Query: 109 GNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLV 168
            +      L+     +          S + SL        D    +    E +  + S+ 
Sbjct: 199 FDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM-SVE 257

Query: 169 ELRL 172
            + L
Sbjct: 258 SINL 261

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 19/112 (16%), Positives = 29/112 (25%), Gaps = 11/112 (9%)

Query: 66  KYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDL-NNFLD 124
           K  +         ++P  +        L  S +        +   L NL +LDL    + 
Sbjct: 15  KTYNCENLGLN--EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY 70

Query: 125 QSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176
               I          L  L L    L   A   L      ++L  L      
Sbjct: 71  ---WIHEDTFQSQHRLDTLVLTANPLIFMAETALSG---PKALKHLFFIQTG 116

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 55  ISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNL 114
              +   LK + ++DLS N        E +  LK + YLNL+ +  S  +P  L  L+  
Sbjct: 492 DQHAFTSLKMMNHVDLSHNRLTSSS-IEALSHLKGI-YLNLASNHISIILPSLLPILSQQ 549

Query: 115 LYLDLNN 121
             ++L  
Sbjct: 550 RTINLRQ 556

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.1 bits (154), Expect = 2e-12
 Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 4/97 (4%)

Query: 50  ELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLG 109
                     L L  L  L ++ N+FK   +     +   L +L+LS             
Sbjct: 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD 494

Query: 110 NLTNLLYLDL-NNFLDQSNQIGLGWLSGLPSLKYLNL 145
            L  L  L++ +N L     +     + L SL  L+ 
Sbjct: 495 TLHRLQLLNMSHNNL---LFLDSSHYNQLYSLSTLDC 528

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 61.6 bits (150), Expect = 7e-12
 Identities = 25/115 (21%), Positives = 52/115 (45%), Gaps = 5/115 (4%)

Query: 55  ISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNL 114
           +S + + L++L++LD   +  K         SL++L YL++S +            LT+L
Sbjct: 391 MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL 450

Query: 115 LYLDL--NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSL 167
             L +  N+F D +        +   +L +L+L    L + +    +++  L+ L
Sbjct: 451 NTLKMAGNSFKDNTLS---NVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL 502

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.0 bits (138), Expect = 3e-10
 Identities = 29/119 (24%), Positives = 45/119 (37%), Gaps = 7/119 (5%)

Query: 55  ISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNL 114
            S S     +L++LDLS    +  +  +    L  L  L L+G+      P S   LT+L
Sbjct: 48  KSYSFSNFSELQWLDLSRCEIETIE-DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 106

Query: 115 LYLDL-NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRL 172
             L      L     +    +  L +LK LN+    +           S L +LV + L
Sbjct: 107 ENLVAVETKL---ASLESFPIGQLITLKKLNVAHNFIHSCKL--PAYFSNLTNLVHVDL 160

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 33/126 (26%), Positives = 45/126 (35%), Gaps = 9/126 (7%)

Query: 53  GPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQS-LGNL 111
           G  S S L    L++LDLS N             L+EL++L+   S        S   +L
Sbjct: 366 GCCSYSDLGTNSLRHLDLSFNGAIIM--SANFMGLEELQHLDFQHSTLKRVTEFSAFLSL 423

Query: 112 TNLLYLDL-NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVEL 170
             LLYLD+             G   GL SL  L + G     +        +   +L  L
Sbjct: 424 EKLLYLDISYTNTKIDFD---GIFLGLTSLNTLKMAGNSFKDNT--LSNVFANTTNLTFL 478

Query: 171 RLPNCN 176
            L  C 
Sbjct: 479 DLSKCQ 484

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 19/128 (14%), Positives = 34/128 (26%), Gaps = 11/128 (8%)

Query: 55  ISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTI------PQSL 108
           I     Q   L  L L  N      +   + +L  L    L    F          P  +
Sbjct: 196 IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIM 255

Query: 109 GNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLV 168
             L ++   +            +     L ++  ++L G  +       LE +       
Sbjct: 256 EGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-----LEDVPKHFKWQ 310

Query: 169 ELRLPNCN 176
            L +  C 
Sbjct: 311 SLSIIRCQ 318

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.9 bits (130), Expect = 3e-09
 Identities = 31/129 (24%), Positives = 49/129 (37%), Gaps = 11/129 (8%)

Query: 51  LGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGN 110
           L    S  + QL  LK L+++ N     K+P +  +L  L +++LS ++        L  
Sbjct: 116 LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175

Query: 111 LTNL----LYLDL-NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLR 165
           L       L LD+  N +   + I      G+  L  L L G   S +       +  L 
Sbjct: 176 LRENPQVNLSLDMSLNPI---DFIQDQAFQGI-KLHELTLRGNFNSSNIM--KTCLQNLA 229

Query: 166 SLVELRLPN 174
            L   RL  
Sbjct: 230 GLHVHRLIL 238

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 51.2 bits (123), Expect = 3e-08
 Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 14/121 (11%)

Query: 60  LQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNL--TNLLYL 117
           L L  LK L L+MN      +     +L  L YL+LS +  S +   S  +L   +L +L
Sbjct: 325 LDLPFLKSLTLTMNKGS---ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL 381

Query: 118 DLNNFLDQSNQIGL--GWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNC 175
           DL+      N   +      GL  L++L+   + L +       +   L  L+ L +   
Sbjct: 382 DLSF-----NGAIIMSANFMGLEELQHLDFQHSTLKRVTE--FSAFLSLEKLLYLDISYT 434

Query: 176 N 176
           N
Sbjct: 435 N 435

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 26/125 (20%), Positives = 42/125 (33%), Gaps = 12/125 (9%)

Query: 53  GPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLT 112
           G ++P +  + ++             KVP+ I S    + ++LS +        S  N +
Sbjct: 2   GSLNPCIEVVPNI-TYQCMDQKLS--KVPDDIPS--STKNIDLSFNPLKILKSYSFSNFS 56

Query: 113 NLLYLDL-NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELR 171
            L +LDL    +     I      GL  L  L L G  +   +         L SL  L 
Sbjct: 57  ELQWLDLSRCEI---ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSG---LTSLENLV 110

Query: 172 LPNCN 176
                
Sbjct: 111 AVETK 115

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.6 bits (106), Expect = 6e-06
 Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 2/68 (2%)

Query: 55  ISPSLLQ-LKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTN 113
           IS  +   L  L+ L++S NN            L  L  L+ S +    +         +
Sbjct: 488 ISWGVFDTLHRLQLLNMSHNNLLFLD-SSHYNQLYSLSTLDCSFNRIETSKGILQHFPKS 546

Query: 114 LLYLDLNN 121
           L + +L N
Sbjct: 547 LAFFNLTN 554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 26/136 (19%), Positives = 43/136 (31%), Gaps = 26/136 (19%)

Query: 56  SPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKE------------------LRYLNLSG 97
                 L ++  + L+  + K  +        +                   L+ L L+ 
Sbjct: 278 IVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTM 337

Query: 98  SFFSGTIPQSLGNLTNLLYLDL-NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAY 156
           +   G+I      L +L YLDL  N L  S       L G  SL++L+L        +  
Sbjct: 338 N--KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDL-GTNSLRHLDLSFNGAIIMS-- 392

Query: 157 WLESISMLRSLVELRL 172
              +   L  L  L  
Sbjct: 393 --ANFMGLEELQHLDF 406

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 62.6 bits (152), Expect = 4e-12
 Identities = 22/107 (20%), Positives = 37/107 (34%), Gaps = 5/107 (4%)

Query: 50  ELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLG 109
               P   +      L  +DL  N            +L  L  +++S + FS + P    
Sbjct: 715 NSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPL 773

Query: 110 NLTNLLYLDLNNFLDQSNQIGLG----WLSGLPSLKYLNLGGADLSK 152
           N + L    + +  D      L      ++  PSL  L +G  D+ K
Sbjct: 774 NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK 820

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 62.2 bits (151), Expect = 5e-12
 Identities = 22/143 (15%), Positives = 45/143 (31%), Gaps = 27/143 (18%)

Query: 55  ISPSLLQLKDLKYLDLSMNNFKGF------------------KVPEFIGSLKELRYLNLS 96
           IS ++ +L  L+ +  + + F                            +LK+L  + L 
Sbjct: 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELY 499

Query: 97  GSFFSGTIPQSLGNLTNLLYLDL--NNFLDQSNQIGL-----GWLSGLPSLKYLNLGGAD 149
                  +P  L +L  L  L++  N  +  +                P ++   +G  +
Sbjct: 500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559

Query: 150 LSKDAAYWLESISMLRSLVELRL 172
           L +  A    S+  +  L  L  
Sbjct: 560 LEEFPASA--SLQKMVKLGLLDC 580

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.5 bits (144), Expect = 4e-11
 Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 13/100 (13%)

Query: 54  PISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNL------SGSFFSGTIPQS 107
                   L  L  +D+S N F  F  P    +  +L+   +       G+      P  
Sbjct: 744 SDDFRATTLPYLSNMDVSYNCFSSF--PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG 801

Query: 108 LGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGG 147
           +    +L+ L + +     N I        P L  L++  
Sbjct: 802 ITTCPSLIQLQIGS-----NDIRKVDEKLTPQLYILDIAD 836

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.1 bits (143), Expect = 7e-11
 Identities = 13/119 (10%), Positives = 37/119 (31%), Gaps = 8/119 (6%)

Query: 55  ISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNL 114
           ++        ++   +  NN + F     +  + +L  L+   +       ++ G    L
Sbjct: 540 LADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKL 597

Query: 115 LYLDL-NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRL 172
             L L  N +    +I   + +    ++ L      L       + +   +  +  +  
Sbjct: 598 TDLKLDYNQI---EEIPEDFCAFTDQVEGLGFSHNKLKYIPN--IFNAKSVYVMGSVDF 651

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.4 bits (136), Expect = 5e-10
 Identities = 16/125 (12%), Positives = 39/125 (31%), Gaps = 15/125 (12%)

Query: 53  GPISPSLLQLKDLKYLDLSMNNFKGF--------KVPEFIGSLKELRYLNLSGSFFSG-T 103
             +   L  L +L+ L+++ N             ++ +   +  +++   +  +      
Sbjct: 505 TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFP 564

Query: 104 IPQSLGNLTNLLYLDLNNFLDQSNQI-GLGWLSGLPSLKYLNLGGADLSKDAAYWLESIS 162
              SL  +  L  LD  +     N++  L        L  L L    + +    +     
Sbjct: 565 ASASLQKMVKLGLLDCVH-----NKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTD 619

Query: 163 MLRSL 167
            +  L
Sbjct: 620 QVEGL 624

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 55.7 bits (134), Expect = 9e-10
 Identities = 19/130 (14%), Positives = 34/130 (26%), Gaps = 17/130 (13%)

Query: 52  GGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSG-------SFFSGTI 104
               S    +  +   + LS N  + F   E   +   +  + LS               
Sbjct: 662 NISCSMDDYKGINASTVTLSYNEIQKF-PTELFATGSPISTIILSNNLMTSIPENSLKPK 720

Query: 105 PQSLGNLTNLLYLDL--NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESIS 162
             +  N   L  +DL  N     S+         LP L  +++     S     +     
Sbjct: 721 DGNYKNTYLLTTIDLRFNKLTSLSDDFRAT---TLPYLSNMDVSYNCFSS----FPTQPL 773

Query: 163 MLRSLVELRL 172
               L    +
Sbjct: 774 NSSQLKAFGI 783

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.9 bits (132), Expect = 2e-09
 Identities = 16/132 (12%), Positives = 37/132 (28%), Gaps = 11/132 (8%)

Query: 54  PISPSLLQLKDLKYLDLSMNNFKGFKVPEFIG----SLKELRYLNLSGSFFSGTIPQSLG 109
           P   +   +  +  +D S N                       + LS +       +   
Sbjct: 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFA 694

Query: 110 NLTNLLYLDL-NNFL----DQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISML 164
             + +  + L NN +    + S +   G       L  ++L    L+  +  +    + L
Sbjct: 695 TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDF--RATTL 752

Query: 165 RSLVELRLPNCN 176
             L  + +    
Sbjct: 753 PYLSNMDVSYNC 764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.0 bits (127), Expect = 7e-09
 Identities = 23/149 (15%), Positives = 42/149 (28%), Gaps = 31/149 (20%)

Query: 55  ISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSG------------ 102
                     LK   +     +   + + I  L +L+ +  + S F+             
Sbjct: 415 KPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANS 474

Query: 103 -------TIPQSLGNLTNLLYLDLNNFLDQSNQIGL--GWLSGLPSLKYLNL------GG 147
                      S  NL +L  ++L N       +     +L  LP L+ LN+        
Sbjct: 475 DYAKQYENEELSWSNLKDLTDVELYN----CPNMTQLPDFLYDLPELQSLNIACNRGISA 530

Query: 148 ADLSKDAAYWLESISMLRSLVELRLPNCN 176
           A L  D     +       +    +   N
Sbjct: 531 AQLKADWTRLADDEDTGPKIQIFYMGYNN 559

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 52.6 bits (126), Expect = 1e-08
 Identities = 13/129 (10%), Positives = 31/129 (24%), Gaps = 14/129 (10%)

Query: 55  ISPSLLQ-LKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSG-----TIPQSL 108
           I          ++ L  S N  K         S+  +  ++ S +         +     
Sbjct: 610 IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669

Query: 109 GNLTNLLYLDL-NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSK----DAAYWLESISM 163
               N   + L  N +    +      +    +  + L    ++            +   
Sbjct: 670 YKGINASTVTLSYNEI---QKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN 726

Query: 164 LRSLVELRL 172
              L  + L
Sbjct: 727 TYLLTTIDL 735

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 52.2 bits (125), Expect = 2e-08
 Identities = 22/131 (16%), Positives = 42/131 (32%), Gaps = 3/131 (2%)

Query: 47  AGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQ 106
           AG    G +  ++ QL +LK L    ++            L                   
Sbjct: 331 AGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKM 390

Query: 107 SLGNLTNLLYLDL-NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLR 165
            L     L   DL  + ++++ ++         SLK   +G  +L+    +  ++I  L 
Sbjct: 391 FLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIG--NLTNRITFISKAIQRLT 448

Query: 166 SLVELRLPNCN 176
            L  +   N  
Sbjct: 449 KLQIIYFANSP 459

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.5 bits (118), Expect = 1e-07
 Identities = 23/170 (13%), Positives = 49/170 (28%), Gaps = 7/170 (4%)

Query: 7   ALSDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLK 66
            + D   L  I+     +     S        S +   +      G      L     + 
Sbjct: 267 YIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVT 326

Query: 67  YLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQS 126
            L L+    KG +VP+ IG L EL+ L+      + +              +      + 
Sbjct: 327 GLSLAGFGAKG-RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRM 385

Query: 127 NQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176
           +   +  L     L   +L    +++        +  ++    + L +  
Sbjct: 386 HYKKMF-LDYDQRLNLSDLLQDAINR-----NPEMKPIKKDSRISLKDTQ 429

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.6 bits (108), Expect = 2e-06
 Identities = 24/121 (19%), Positives = 41/121 (33%), Gaps = 12/121 (9%)

Query: 56  SPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLL 115
               L L DL    ++ N        +   SLK+ +  NL+       I +++  LT L 
Sbjct: 394 YDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI--TFISKAIQRLTKLQ 451

Query: 116 YLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNC 175
            +   N     +       +            +D +K       S S L+ L ++ L NC
Sbjct: 452 IIYFAN-----SP-----FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC 501

Query: 176 N 176
            
Sbjct: 502 P 502

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 13/92 (14%), Positives = 30/92 (32%), Gaps = 5/92 (5%)

Query: 45  DDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSG-SFFSGT 103
           D  G+ +       +     L  L +  N+ +  KV E +    +L  L+++     S  
Sbjct: 788 DAEGNRILRQWPTGITTCPSLIQLQIGSNDIR--KVDEKL--TPQLYILDIADNPNISID 843

Query: 104 IPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLS 135
           +      +   +Y+ L +            + 
Sbjct: 844 VTSVCPYIEAGMYVLLYDKTQDIRGCDALGIE 875

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.0 bits (146), Expect = 9e-12
 Identities = 21/116 (18%), Positives = 43/116 (37%), Gaps = 9/116 (7%)

Query: 61  QLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLN 120
              ++K L ++  +   +     I  L  L  L + G   +     +L  LT+L  LD++
Sbjct: 64  YAHNIKDLTINNIHATNY---NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120

Query: 121 NFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176
           +     +   L  ++ LP +  ++L       D    +  +  L  L  L +    
Sbjct: 121 H--SAHDDSILTKINTLPKVNSIDLSYNGAITD----IMPLKTLPELKSLNIQFDG 170

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.4 bits (142), Expect = 3e-11
 Identities = 26/123 (21%), Positives = 47/123 (38%), Gaps = 12/123 (9%)

Query: 55  ISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNL 114
            +P +  L +L+ L +   +    K+P  +  L  L  L++S S    +I   +  L  +
Sbjct: 81  YNP-ISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLLDISHSAHDDSILTKINTLPKV 138

Query: 115 LYLDLNNFLDQSNQIG-LGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLP 173
             +DL+     +  I  +  L  LP LK LN+    +          I     L +L   
Sbjct: 139 NSIDLSY----NGAITDIMPLKTLPELKSLNIQFDGVHD-----YRGIEDFPKLNQLYAF 189

Query: 174 NCN 176
           +  
Sbjct: 190 SQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.9 bits (107), Expect = 2e-06
 Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 11/94 (11%)

Query: 84  IGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQI-GLGWLSGLPSLKY 142
              +  L Y+ L+    +      +    N+  L +NN             +SGL +L+ 
Sbjct: 40  EAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINN-----IHATNYNPISGLSNLER 92

Query: 143 LNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176
           L + G D++ D    + ++S L SL  L + +  
Sbjct: 93  LRIMGKDVTSDK---IPNLSGLTSLTLLDISHSA 123

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 61.3 bits (148), Expect = 1e-11
 Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 13/118 (11%)

Query: 57  PSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLY 116
             L QL  + +LDLS N  +   +P  + +L+ L  L  S +     +   + NL  L  
Sbjct: 457 CHLEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQE 512

Query: 117 LDLNNFLDQSNQI----GLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVEL 170
           L L N     N++     +  L   P L  LNL G  L ++         ML S+  +
Sbjct: 513 LLLCN-----NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 21/126 (16%)

Query: 58  SLLQLKDLKYLD-------LSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGN 110
           +L     LK +D         + +    +         ++R L+L+      T+   L  
Sbjct: 404 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--TVLCHLEQ 461

Query: 111 LTNLLYLDLNNFLDQSNQIG--LGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLV 168
           L  + +LDL++     N++      L+ L  L+ L      L       ++ ++ L  L 
Sbjct: 462 LLLVTHLDLSH-----NRLRALPPALAALRCLEVLQASDNALEN-----VDGVANLPRLQ 511

Query: 169 ELRLPN 174
           EL L N
Sbjct: 512 ELLLCN 517

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 59.4 bits (143), Expect = 5e-11
 Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 16/121 (13%)

Query: 57  PSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLY 116
            +  +L  +  +  + ++ K     + I  L  +  L L+G+  +   P  L NL NL +
Sbjct: 37  VTQNELNSIDQIIANNSDIKSV---QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGW 91

Query: 117 LDLNNFLDQSNQIG-LGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNC 175
           L L+      N+I  L  L  L  LK L+L    +S      +  +  L  L  L L N 
Sbjct: 92  LFLDE-----NKIKDLSSLKDLKKLKSLSLEHNGISD-----INGLVHLPQLESLYLGNN 141

Query: 176 N 176
            
Sbjct: 142 K 142

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 55.9 bits (134), Expect = 9e-10
 Identities = 23/123 (18%), Positives = 43/123 (34%), Gaps = 17/123 (13%)

Query: 55  ISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNL 114
           I P      +    +L   +            L  +  +  + S    ++ Q +  L N+
Sbjct: 14  IFP-DDAFAETIKDNLKKKSVTDA---VTQNELNSIDQIIANNSDIK-SV-QGIQYLPNV 67

Query: 115 LYLDLNNFLDQSNQI-GLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLP 173
             L LN      N++  +  L+ L +L +L L    +       L S+  L+ L  L L 
Sbjct: 68  TKLFLNG-----NKLTDIKPLTNLKNLGWLFLDENKIKD-----LSSLKDLKKLKSLSLE 117

Query: 174 NCN 176
           +  
Sbjct: 118 HNG 120

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 54.0 bits (129), Expect = 3e-09
 Identities = 35/121 (28%), Positives = 49/121 (40%), Gaps = 16/121 (13%)

Query: 57  PSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLY 116
            SL  LK LK L L  N          +  L +L  L L  +    T    L  LT L  
Sbjct: 103 SSLKDLKKLKSLSLEHNGISDI---NGLVHLPQLESLYLGNN--KITDITVLSRLTKLDT 157

Query: 117 LDLNNFLDQSNQI-GLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNC 175
           L L +     NQI  +  L+GL  L+ L L    +S      L +++ L++L  L L + 
Sbjct: 158 LSLED-----NQISDIVPLAGLTKLQNLYLSKNHISD-----LRALAGLKNLDVLELFSQ 207

Query: 176 N 176
            
Sbjct: 208 E 208

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 59.0 bits (143), Expect = 7e-11
 Identities = 26/115 (22%), Positives = 40/115 (34%), Gaps = 2/115 (1%)

Query: 58  SLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYL 117
           S   L+ L+ L+L           E   +L  LR L+L  S      P +   L +L  L
Sbjct: 43  SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102

Query: 118 DLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRL 172
            L         +  G+   L +L  L+L    +     +   S   L SL  +  
Sbjct: 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP--SFGKLNSLKSIDF 155

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 55.6 bits (134), Expect = 1e-09
 Identities = 29/127 (22%), Positives = 47/127 (37%), Gaps = 14/127 (11%)

Query: 54  PISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSL----- 108
            I   LL++  L+ L L+ N F      +       L  L L  +         L     
Sbjct: 417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF 476

Query: 109 GNLTNLLYLDL-NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSL 167
             L++L  L L +N+L   N +  G  S L +L+ L+L    L+      L    +  +L
Sbjct: 477 EGLSHLQVLYLNHNYL---NSLPPGVFSHLTALRGLSLNSNRLT-----VLSHNDLPANL 528

Query: 168 VELRLPN 174
             L +  
Sbjct: 529 EILDISR 535

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 53.3 bits (128), Expect = 5e-09
 Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 5/109 (4%)

Query: 60  LQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDL 119
           L    +++LDLS              +LK+L+ LNL+ +  +    ++   L NL  L+L
Sbjct: 263 LARSSVRHLDLSHGFVFSLN-SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321

Query: 120 -NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSL 167
             N L    ++      GLP + Y++L    ++       + +  L++L
Sbjct: 322 SYNLLG---ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTL 367

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.9 bits (127), Expect = 7e-09
 Identities = 30/113 (26%), Positives = 44/113 (38%), Gaps = 7/113 (6%)

Query: 62  LKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTI-PQSLGNLTNLLYLDL- 119
           L   + L LS N  +      F   L++L+ L L   +   TI  ++  NL NL  LDL 
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPF-LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 120 NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRL 172
           ++ +     +      GL  L  L L    LS            L++L  L L
Sbjct: 82  SSKI---YFLHPDAFQGLFHLFELRLYFCGLSDAVLKD-GYFRNLKALTRLDL 130

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.4 bits (118), Expect = 1e-07
 Identities = 21/102 (20%), Positives = 36/102 (35%), Gaps = 4/102 (3%)

Query: 54  PISPSLLQ-LKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLT 112
            +     + LK L  LDLS N  +   +    G L  L+ ++ S +         L  L 
Sbjct: 113 VLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ 172

Query: 113 --NLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSK 152
              L +  L      S  + + W   +   + + L   D+S 
Sbjct: 173 GKTLSFFSLAANSLYSR-VSVDWGKCMNPFRNMVLEILDVSG 213

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.3 bits (115), Expect = 3e-07
 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 8/90 (8%)

Query: 62  LKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNN 121
           L +L+ L+LS N         F G L ++ Y++L  +  +    Q+   L  L  LDL +
Sbjct: 313 LDNLQVLNLSYNLLGELYSSNFYG-LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD 371

Query: 122 FLDQSNQIGLGWLSGLPSLKYLNLGGADLS 151
                N +    +  +PS+  + L G  L 
Sbjct: 372 -----NALTT--IHFIPSIPDIFLSGNKLV 394

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.1 bits (112), Expect = 9e-07
 Identities = 25/121 (20%), Positives = 47/121 (38%), Gaps = 5/121 (4%)

Query: 49  HELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKE-LRYLNLSGSFFSGTIPQS 107
           + +    + SL+    +       +N K      F G  +  +R+L+LS  F      + 
Sbjct: 226 NAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV 285

Query: 108 LGNLTNLLYLDL-NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRS 166
              L +L  L+L  N +   N+I      GL +L+ LNL    L +  +     +  +  
Sbjct: 286 FETLKDLKVLNLAYNKI---NKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY 342

Query: 167 L 167
           +
Sbjct: 343 I 343

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 27/113 (23%), Positives = 40/113 (35%), Gaps = 9/113 (7%)

Query: 64  DLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFL 123
           D +       N    +VP+    L     L LS ++       S   L  L  L+L +  
Sbjct: 5   DGRIAFYRFCNLT--QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY 59

Query: 124 DQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176
                I       LP+L+ L+LG + +        +    L  L ELRL  C 
Sbjct: 60  -TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG---LFHLFELRLYFCG 108

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 37/121 (30%), Positives = 52/121 (42%), Gaps = 16/121 (13%)

Query: 57  PSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLY 116
             L +L +L+ L  + N          +G L  L  L+L+G+        +L +LTNL  
Sbjct: 193 SVLAKLTNLESLIATNNQISDI---TPLGILTNLDELSLNGNQLKD--IGTLASLTNLTD 247

Query: 117 LDLNNFLDQSNQI-GLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNC 175
           LDL N     NQI  L  LSGL  L  L LG   +S      +  ++ L +L  L L   
Sbjct: 248 LDLAN-----NQISNLAPLSGLTKLTELKLGANQISN-----ISPLAGLTALTNLELNEN 297

Query: 176 N 176
            
Sbjct: 298 Q 298

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 57.3 bits (139), Expect = 2e-10
 Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 16/121 (13%)

Query: 57  PSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLY 116
            S   L  +  L       K     + +  L  L  +N S +  +   P  L NLT L+ 
Sbjct: 40  VSQTDLDQVTTLQADRLGIKS---IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVD 94

Query: 117 LDLNNFLDQSNQI-GLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNC 175
           + +NN     NQI  +  L+ L +L  L L    ++      ++ +  L +L  L L + 
Sbjct: 95  ILMNN-----NQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSN 144

Query: 176 N 176
            
Sbjct: 145 T 145

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.9 bits (138), Expect = 3e-10
 Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 17/121 (14%)

Query: 57  PSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLY 116
             L  L +L  L+LS N          +  L  L+ L+        T  + L NLT L  
Sbjct: 128 DPLKNLTNLNRLELSSNTISD---ISALSGLTSLQQLSFGNQV---TDLKPLANLTTLER 181

Query: 117 LDLNNFLDQSNQI-GLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNC 175
           LD+++     N++  +  L+ L +L+ L      +S      +  + +L +L EL L   
Sbjct: 182 LDISS-----NKVSDISVLAKLTNLESLIATNNQISD-----ITPLGILTNLDELSLNGN 231

Query: 176 N 176
            
Sbjct: 232 Q 232

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.7 bits (135), Expect = 7e-10
 Identities = 34/121 (28%), Positives = 49/121 (40%), Gaps = 16/121 (13%)

Query: 57  PSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLY 116
            +L  L +L  LDL+ N          +  L +L  L L  +  S   P  L  LT L  
Sbjct: 237 GTLASLTNLTDLDLANNQISNL---APLSGLTKLTELKLGANQISNISP--LAGLTALTN 291

Query: 117 LDLNNFLDQSNQI-GLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNC 175
           L+LN      NQ+  +  +S L +L YL L   ++S      +  +S L  L  L   N 
Sbjct: 292 LELNE-----NQLEDISPISNLKNLTYLTLYFNNISD-----ISPVSSLTKLQRLFFYNN 341

Query: 176 N 176
            
Sbjct: 342 K 342

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 11/112 (9%)

Query: 57  PSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLY 116
             +  LK+L YL L  NN         + SL +L+ L    +  S     SL NLTN+ +
Sbjct: 303 SPISNLKNLTYLTLYFNNISDI---SPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINW 357

Query: 117 LDLNNFLDQSNQI-GLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSL 167
           L   +     NQI  L  L+ L  +  L L     +     +  ++S+  ++
Sbjct: 358 LSAGH-----NQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTV 404

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 19/121 (15%), Positives = 37/121 (30%), Gaps = 16/121 (13%)

Query: 57  PSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLY 116
            +   L +     L   N            L ++  L              +  L NL  
Sbjct: 18  FTDTALAEKMKTVLGKTNVTD---TVSQTDLDQVTTLQADRL--GIKSIDGVEYLNNLTQ 72

Query: 117 LDLNNFLDQSNQI-GLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNC 175
           ++ +N     NQ+  +  L  L  L  + +    ++      +  ++ L +L  L L N 
Sbjct: 73  INFSN-----NQLTDITPLKNLTKLVDILMNNNQIAD-----ITPLANLTNLTGLTLFNN 122

Query: 176 N 176
            
Sbjct: 123 Q 123

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 12/91 (13%), Positives = 27/91 (29%), Gaps = 7/91 (7%)

Query: 57  PSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLY 116
            SL  L ++ +L    N          + +L  +  L L+   ++        N++    
Sbjct: 347 SSLANLTNINWLSAGHNQISDL---TPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNT 403

Query: 117 LDLNNFLDQSNQIGLGWLSGLPSLKYLNLGG 147
           +           I    +S   S    ++  
Sbjct: 404 VKNVT----GALIAPATISDGGSYTEPDITW 430

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.2 bits (139), Expect = 2e-10
 Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 15/121 (12%)

Query: 57  PSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLY 116
             +  L +L+YL+L+ N          + +L +L  L +  +    T   +L NLTNL  
Sbjct: 60  QGIEYLTNLEYLNLNGNQITDI---SPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRE 114

Query: 117 LDLNNFLDQSNQI-GLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNC 175
           L LN      + I  +  L+ L  +  LNLG      D    L  +S +  L  L +   
Sbjct: 115 LYLNE-----DNISDISPLANLTKMYSLNLGANHNLSD----LSPLSNMTGLNYLTVTES 165

Query: 176 N 176
            
Sbjct: 166 K 166

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.8 bits (138), Expect = 3e-10
 Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 9/97 (9%)

Query: 57  PSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLY 116
            ++  L  LK L++  N          + +L +L  L L+ +       + +G LTNL  
Sbjct: 259 NAVKDLTKLKMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315

Query: 117 LDLNNFLDQSNQI-GLGWLSGLPSLKYLNLGGADLSK 152
           L L+      N I  +  L+ L  +   +     + K
Sbjct: 316 LFLSQ-----NHITDIRPLASLSKMDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 55.6 bits (135), Expect = 6e-10
 Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 16/121 (13%)

Query: 57  PSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLY 116
            +  +L+ +  L ++          + I  L  L YLNL+G+  +   P  L NL  L  
Sbjct: 38  VTQEELESITKLVVAGEKVASI---QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTN 92

Query: 117 LDLNNFLDQSNQI-GLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNC 175
           L +       N+I  +  L  L +L+ L L   ++S      +  ++ L  +  L L   
Sbjct: 93  LYIGT-----NKITDISALQNLTNLRELYLNEDNISD-----ISPLANLTKMYSLNLGAN 142

Query: 176 N 176
           +
Sbjct: 143 H 143

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 55.2 bits (134), Expect = 8e-10
 Identities = 30/118 (25%), Positives = 42/118 (35%), Gaps = 17/118 (14%)

Query: 57  PSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLY 116
             L  L  L  L +  N          + +L  LR L L+    S   P  L NLT +  
Sbjct: 82  SPLSNLVKLTNLYIGTNKITD---ISALQNLTNLRELYLNEDNISDISP--LANLTKMYS 136

Query: 117 LDLNNFLDQSNQI--GLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRL 172
           L+L       N     L  LS +  L YL +  + +       +  I+ L  L  L L
Sbjct: 137 LNLGA-----NHNLSDLSPLSNMTGLNYLTVTESKVKD-----VTPIANLTDLYSLSL 184

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.5 bits (132), Expect = 2e-09
 Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 16/121 (13%)

Query: 57  PSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLY 116
             L  +  L YL ++ +  K       I +L +L  L+L+ +      P  L +LT+L Y
Sbjct: 149 SPLSNMTGLNYLTVTESKVKDV---TPIANLTDLYSLSLNYNQIEDISP--LASLTSLHY 203

Query: 117 LDLNNFLDQSNQI-GLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNC 175
                     NQI  +  ++ +  L  L +G   ++      L  ++ L  L  L +   
Sbjct: 204 FTAYV-----NQITDITPVANMTRLNSLKIGNNKITD-----LSPLANLSQLTWLEIGTN 253

Query: 176 N 176
            
Sbjct: 254 Q 254

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.1 bits (131), Expect = 3e-09
 Identities = 26/117 (22%), Positives = 46/117 (39%), Gaps = 14/117 (11%)

Query: 57  PSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLY 116
             +  +  L  L +  N          + +L +L +L +  +  S     ++ +LT L  
Sbjct: 215 TPVANMTRLNSLKIGNNKITDL---SPLANLSQLTWLEIGTNQISD--INAVKDLTKLKM 269

Query: 117 LDLNNFLDQSNQI-GLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRL 172
           L++ +     NQI  +  L+ L  L  L L    L  +    +E I  L +L  L L
Sbjct: 270 LNVGS-----NQISDISVLNNLSQLNSLFLNNNQLGNED---MEVIGGLTNLTTLFL 318

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 53.7 bits (130), Expect = 3e-09
 Identities = 29/120 (24%), Positives = 45/120 (37%), Gaps = 16/120 (13%)

Query: 58  SLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYL 117
               L +     L   +            L+ +  L ++G        Q +  LTNL YL
Sbjct: 17  PDADLAEGIRAVLQKASVTD---VVTQEELESITKLVVAGEKV--ASIQGIEYLTNLEYL 71

Query: 118 DLNNFLDQSNQI-GLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176
           +LN      NQI  +  LS L  L  L +G   ++      + ++  L +L EL L   N
Sbjct: 72  NLNG-----NQITDISPLSNLVKLTNLYIGTNKITD-----ISALQNLTNLRELYLNEDN 121

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.9 bits (138), Expect = 3e-10
 Identities = 27/123 (21%), Positives = 46/123 (37%), Gaps = 15/123 (12%)

Query: 57  PSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLY 116
            S+  L++LK L +  +          I  L +L  L+L G       P   G    L  
Sbjct: 200 ASIANLQNLKSLKIRNSPLSAL--GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257

Query: 117 LDLNNFLDQSNQIGL--GWLSGLPSLKYLNLGG-ADLSKDAAYWL-ESISMLRSLVELRL 172
           L L +     + +      +  L  L+ L+L G  +LS+     L   I+ L +   + +
Sbjct: 258 LILKDC----SNLLTLPLDIHRLTQLEKLDLRGCVNLSR-----LPSLIAQLPANCIILV 308

Query: 173 PNC 175
           P  
Sbjct: 309 PPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.1 bits (136), Expect = 4e-10
 Identities = 33/134 (24%), Positives = 48/134 (35%), Gaps = 24/134 (17%)

Query: 55  ISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSG---------SFFSGTIP 105
           +  ++ Q   L+ L L+ N  +   +P  I SL  LR L++              S    
Sbjct: 119 LPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176

Query: 106 QSLGNLTNLLYLDLNNFLDQSNQIGL--GWLSGLPSLKYLNLGGADLSKDAAYWL-ESIS 162
                L NL  L L         I      ++ L +LK L +  + LS      L  +I 
Sbjct: 177 GEHQGLVNLQSLRLEW-----TGIRSLPASIANLQNLKSLKIRNSPLSA-----LGPAIH 226

Query: 163 MLRSLVELRLPNCN 176
            L  L EL L  C 
Sbjct: 227 HLPKLEELDLRGCT 240

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 52.6 bits (127), Expect = 7e-09
 Identities = 18/131 (13%), Positives = 38/131 (29%), Gaps = 16/131 (12%)

Query: 54  PISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTN 113
                         L+L        + P+    L  L+++ +  +     +P ++     
Sbjct: 72  ADLLEDATQPGRVALELRSVPLP--QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAG 128

Query: 114 LLYLDLNNFLDQSNQIGL--GWLSGLPSLKYLNLGGADLSKD------AAYWLESISMLR 165
           L  L L       N +      ++ L  L+ L++       +      +         L 
Sbjct: 129 LETLTLAR-----NPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183

Query: 166 SLVELRLPNCN 176
           +L  LRL    
Sbjct: 184 NLQSLRLEWTG 194

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 47.2 bits (113), Expect = 5e-07
 Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 4/84 (4%)

Query: 57  PSLLQLKDLKYLDLS-MNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLL 115
           P       LK L L   +N     +P  I  L +L  L+L G      +P  +  L    
Sbjct: 247 PIFGGRAPLKRLILKDCSNLL--TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304

Query: 116 YLDL-NNFLDQSNQIGLGWLSGLP 138
            + +  +   Q +Q         P
Sbjct: 305 IILVPPHLQAQLDQHRPVARPAEP 328

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 56.3 bits (136), Expect = 4e-10
 Identities = 25/116 (21%), Positives = 42/116 (36%), Gaps = 12/116 (10%)

Query: 64  DLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFL 123
           + +YL+L  NN +  +   F   L  L  L L  +        +   L +L  L+L +  
Sbjct: 76  NTRYLNLMENNIQMIQADTFRH-LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD-- 132

Query: 124 DQSNQIGL---GWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176
              N + +   G    L  L+ L L    +    +Y       + SL+ L L    
Sbjct: 133 ---NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNR---VPSLMRLDLGELK 182

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 50.9 bits (122), Expect = 4e-08
 Identities = 41/122 (33%), Positives = 55/122 (45%), Gaps = 15/122 (12%)

Query: 55  ISPSLLQ-LKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTN 113
           IS    + L +LKYL+L M N K   +P     L  L  L +SG+ F    P S   L++
Sbjct: 187 ISEGAFEGLFNLKYLNLGMCNIK--DMPNLTP-LVGLEELEMSGNHFPEIRPGSFHGLSS 243

Query: 114 LLYLDLNNFLDQSNQIG---LGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVEL 170
           L  L + N     +Q+         GL SL  LNL   +LS       +  + LR LVEL
Sbjct: 244 LKKLWVMN-----SQVSLIERNAFDGLASLVELNLAHNNLSSLPH---DLFTPLRYLVEL 295

Query: 171 RL 172
            L
Sbjct: 296 HL 297

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 50.1 bits (120), Expect = 6e-08
 Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 7/111 (6%)

Query: 62  LKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNN 121
           L  L  L+L  N         F   L +LR L L  +        +   + +L+ LDL  
Sbjct: 122 LASLNTLELFDNWLTVIPSGAFEY-LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE 180

Query: 122 FLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRL 172
              +   I  G   GL +LKYLNLG  ++       + +++ L  L EL +
Sbjct: 181 L-KKLEYISEGAFEGLFNLKYLNLGMCNIKD-----MPNLTPLVGLEELEM 225

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 29/125 (23%), Positives = 43/125 (34%), Gaps = 12/125 (9%)

Query: 55  ISPSLLQ-LKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIP-QSLGNLT 112
           I     + L  L+ L L  N  +      F   +  L  L+L        I   +   L 
Sbjct: 138 IPSGAFEYLSKLRELWLRNNPIESIPSYAFNR-VPSLMRLDLGELKKLEYISEGAFEGLF 196

Query: 113 NLLYLDLNNFLDQSNQI-GLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELR 171
           NL YL+L         I  +  L+ L  L+ L + G    +       S   L SL +L 
Sbjct: 197 NLKYLNLGM-----CNIKDMPNLTPLVGLEELEMSGNHFPEIRP---GSFHGLSSLKKLW 248

Query: 172 LPNCN 176
           + N  
Sbjct: 249 VMNSQ 253

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.4 bits (105), Expect = 7e-06
 Identities = 35/127 (27%), Positives = 49/127 (38%), Gaps = 16/127 (12%)

Query: 55  ISPSLLQ-LKDLKYLDLS-MNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLT 112
           I       +  L  LDL  +   +      F G L  L+YLNL        +P +L  L 
Sbjct: 162 IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG-LFNLKYLNLGMCNIK-DMP-NLTPLV 218

Query: 113 NLLYLDLNNFLDQSNQI---GLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVE 169
            L  L+++      N       G   GL SLK L +  + +S        +   L SLVE
Sbjct: 219 GLEELEMSG-----NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER---NAFDGLASLVE 270

Query: 170 LRLPNCN 176
           L L + N
Sbjct: 271 LNLAHNN 277

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 9/94 (9%)

Query: 57  PSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLY 116
           P+L  L  L+ L++S N+F   +   F G L  L+ L +  S  S     +   L +L+ 
Sbjct: 212 PNLTPLVGLEELEMSGNHFPEIRPGSFHG-LSSLKKLWVMNSQVSLIERNAFDGLASLVE 270

Query: 117 LDLNNFLDQSNQ---IGLGWLSGLPSLKYLNLGG 147
           L+L +     N    +     + L  L  L+L  
Sbjct: 271 LNLAH-----NNLSSLPHDLFTPLRYLVELHLHH 299

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.5 bits (134), Expect = 1e-09
 Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 8/90 (8%)

Query: 61  QLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLN 120
            L  L+ L ++ N+F+   +P+    L+ L +L+LS        P +  +L++L  L++ 
Sbjct: 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502

Query: 121 NFLDQSNQIG---LGWLSGLPSLKYLNLGG 147
           +     NQ+     G    L SL+ + L  
Sbjct: 503 S-----NQLKSVPDGIFDRLTSLQKIWLHT 527

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 5/105 (4%)

Query: 64  DLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDL-NNF 122
             K LDLS N  +      F  S  EL+ L+LS          +  +L++L  L L  N 
Sbjct: 29  STKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 123 LDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSL 167
           +     + LG  SGL SL+ L     +L+    + +  +  L+ L
Sbjct: 88  I---QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.3 bits (131), Expect = 2e-09
 Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 9/95 (9%)

Query: 55  ISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNL 114
           +S + L L+ L++LD   +N K         SL+ L YL++S +            L++L
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447

Query: 115 LYLDLNNFLDQSNQIGLGW----LSGLPSLKYLNL 145
             L +       N     +     + L +L +L+L
Sbjct: 448 EVLKMAG-----NSFQENFLPDIFTELRNLTFLDL 477

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.8 bits (127), Expect = 8e-09
 Identities = 28/122 (22%), Positives = 45/122 (36%), Gaps = 7/122 (5%)

Query: 56  SPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLL 115
           S S     +L+ LDLS    +  +      SL  L  L L+G+        +   L++L 
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103

Query: 116 YLDL-NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPN 174
            L      L     +    +  L +LK LN+    +   +    E  S L +L  L L +
Sbjct: 104 KLVAVETNL---ASLENFPIGHLKTLKELNVAHNLIQ--SFKLPEYFSNLTNLEHLDLSS 158

Query: 175 CN 176
             
Sbjct: 159 NK 160

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 49.7 bits (119), Expect = 8e-08
 Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 9/126 (7%)

Query: 53  GPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQS-LGNL 111
           G  S S      LKYLDLS N      +      L++L +L+   S        S   +L
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVI--TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420

Query: 112 TNLLYLDL-NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVEL 170
            NL+YLD+ +     +     G  +GL SL+ L + G    +   +  +  + LR+L  L
Sbjct: 421 RNLIYLDISHTHTRVAFN---GIFNGLSSLEVLKMAGNSFQE--NFLPDIFTELRNLTFL 475

Query: 171 RLPNCN 176
            L  C 
Sbjct: 476 DLSQCQ 481

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 11/96 (11%)

Query: 57  PSLLQLKDLKYLDLSMNNFKGFKVPEF-IGSLKELRYLNLSGSFFSGTIPQSLGNLTNLL 115
            S + L  L++LDLS N                 L+YL+LS +    T+  +   L  L 
Sbjct: 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLE 399

Query: 116 YLDLNNFLDQSNQIG----LGWLSGLPSLKYLNLGG 147
           +LD  +     + +           L +L YL++  
Sbjct: 400 HLDFQH-----SNLKQMSEFSVFLSLRNLIYLDISH 430

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.5 bits (108), Expect = 3e-06
 Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 11/120 (9%)

Query: 58  SLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNL--- 114
            +  LK LK L+++ N  + FK+PE+  +L  L +L+LS +         L  L  +   
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178

Query: 115 -LYLDL-NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRL 172
            L LDL  N +   N I  G    +  L  L L     S +       I  L  L   RL
Sbjct: 179 NLSLDLSLNPM---NFIQPGAFKEI-RLHKLTLRNNFDSLNVMK--TCIQGLAGLEVHRL 232

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 17/116 (14%)

Query: 60  LQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSF--FSGTIPQSLGNLTNLLYL 117
           L+LK LK L  + N          +  L  L +L+LS +   F G   QS    T+L YL
Sbjct: 322 LKLKSLKRLTFTSNKGG--NAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378

Query: 118 DLNNFLDQSNQIGL--GWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELR 171
           DL+      N +        GL  L++L+   ++L       +   S+  SL  L 
Sbjct: 379 DLSF-----NGVITMSSNFLGLEQLEHLDFQHSNLK-----QMSEFSVFLSLRNLI 424

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 24/129 (18%), Positives = 38/129 (29%), Gaps = 12/129 (9%)

Query: 55  ISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTI------PQSL 108
           I P   +   L  L L  N      +   I  L  L    L    F            +L
Sbjct: 192 IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251

Query: 109 GNLTNLLYLDLN-NFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSL 167
             L NL   +    +LD      +   + L ++   +L    + +     ++  S     
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-----VKDFSYNFGW 306

Query: 168 VELRLPNCN 176
             L L NC 
Sbjct: 307 QHLELVNCK 315

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 21/87 (24%), Positives = 29/87 (33%), Gaps = 5/87 (5%)

Query: 90  LRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGAD 149
            + L+LS +        S  +   L  LDL+    +   I  G    L  L  L L G  
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR--CEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 150 LSKDAAYWLESISMLRSLVELRLPNCN 176
           +   A         L SL +L     N
Sbjct: 88  IQSLALGAFSG---LSSLQKLVAVETN 111

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 27/124 (21%), Positives = 44/124 (35%), Gaps = 9/124 (7%)

Query: 54  PISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRY----LNLSGSFFSGTIPQSLG 109
            +      L +L++LDLS N  +       +  L ++      L+LS +  +  I     
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIY-CTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAF 197

Query: 110 NLTNLLYLDL-NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLV 168
               L  L L NNF   S  +    + GL  L+   L   +   +        S L  L 
Sbjct: 198 KEIRLHKLTLRNNFD--SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 255

Query: 169 ELRL 172
            L +
Sbjct: 256 NLTI 259

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 54.8 bits (132), Expect = 2e-09
 Identities = 28/116 (24%), Positives = 42/116 (36%), Gaps = 12/116 (10%)

Query: 64  DLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFL 123
           + + L+L  N  +  KV  F   L+ L  L LS +        +   L NL  L+L +  
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKH-LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD-- 121

Query: 124 DQSNQIGL---GWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176
              N++     G    L  LK L L    +    +Y       + SL  L L    
Sbjct: 122 ---NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR---IPSLRRLDLGELK 171

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 50.9 bits (122), Expect = 4e-08
 Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 15/122 (12%)

Query: 55  ISPSLLQ-LKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTN 113
           IS    + L +L+YL+L+M N +  ++P     L +L  L+LSG+  S   P S   L +
Sbjct: 176 ISEGAFEGLSNLRYLNLAMCNLR--EIPNLTP-LIKLDELDLSGNHLSAIRPGSFQGLMH 232

Query: 114 LLYLDLNNFLDQSNQI---GLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVEL 170
           L  L +       +QI          L SL  +NL   +L+       +  + L  L  +
Sbjct: 233 LQKLWMIQ-----SQIQVIERNAFDNLQSLVEINLAHNNLTLLPH---DLFTPLHHLERI 284

Query: 171 RL 172
            L
Sbjct: 285 HL 286

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.4 bits (118), Expect = 1e-07
 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 7/111 (6%)

Query: 62  LKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNN 121
           L +L  L+L  N         F+  L +L+ L L  +        +   + +L  LDL  
Sbjct: 111 LANLNTLELFDNRLTTIPNGAFVY-LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE 169

Query: 122 FLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRL 172
              + + I  G   GL +L+YLNL   +L +     + +++ L  L EL L
Sbjct: 170 L-KRLSYISEGAFEGLSNLRYLNLAMCNLRE-----IPNLTPLIKLDELDL 214

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.4 bits (105), Expect = 7e-06
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 9/94 (9%)

Query: 57  PSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLY 116
           P+L  L  L  LDLS N+    +   F G L  L+ L +  S        +  NL +L+ 
Sbjct: 201 PNLTPLIKLDELDLSGNHLSAIRPGSFQG-LMHLQKLWMIQSQIQVIERNAFDNLQSLVE 259

Query: 117 LDLNNFLDQSNQ---IGLGWLSGLPSLKYLNLGG 147
           ++L +     N    +     + L  L+ ++L  
Sbjct: 260 INLAH-----NNLTLLPHDLFTPLHHLERIHLHH 288

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.1 bits (128), Expect = 2e-09
 Identities = 24/113 (21%), Positives = 40/113 (35%), Gaps = 12/113 (10%)

Query: 62  LKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNN 121
           L     +D S N  +     +    L+ L+ L ++ +            L +L  L L N
Sbjct: 41  LDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN 97

Query: 122 FLDQSNQIG----LGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVEL 170
                N +     L  L+ L SL YL +    ++    Y L  I  +  +  L
Sbjct: 98  -----NSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL 145

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 52.8 bits (127), Expect = 2e-09
 Identities = 27/120 (22%), Positives = 46/120 (38%), Gaps = 12/120 (10%)

Query: 55  ISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNL 114
           I     +  +L++L L             +  L +L+ L LS +   G +      L NL
Sbjct: 41  IEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97

Query: 115 LYLDLNNFLDQSNQIG----LGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVEL 170
            +L+L+      N++     L  L  L  LK L+L   +++    Y      +L  L  L
Sbjct: 98  THLNLSG-----NKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 54.5 bits (131), Expect = 2e-09
 Identities = 22/116 (18%), Positives = 41/116 (35%), Gaps = 15/116 (12%)

Query: 60  LQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDL 119
                 K   ++ ++ K         S   ++ L+LSG+  S      L   T L  L+L
Sbjct: 7   QNGNRYKIEKVTDSSLKQAL-ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 120 NNFLDQSNQI-GLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPN 174
           ++     N +     L  L +L+ L+L    +          + +  S+  L   N
Sbjct: 66  SS-----NVLYETLDLESLSTLRTLDLNNNYVQ--------ELLVGPSIETLHAAN 108

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.1 bits (117), Expect = 1e-07
 Identities = 21/117 (17%), Positives = 41/117 (35%), Gaps = 13/117 (11%)

Query: 58  SLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYL 117
                  ++YLDL +N        E   S   L +LNL  +F    +   +     L  L
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTL 196

Query: 118 DLNNFLDQSNQIGL--GWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRL 172
           DL++     N++            + +++L    L        +++   ++L    L
Sbjct: 197 DLSS-----NKLAFMGPEFQSAAGVTWISLRNNKLV----LIEKALRFSQNLEHFDL 244

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 6/90 (6%)

Query: 57  PSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLY 116
              +    LK LDLS N      +     S   + +++L  +     I ++L    NL +
Sbjct: 185 KGQVVFAKLKTLDLSSNKLA--FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEH 241

Query: 117 LDL-NNFLDQSNQIGLGWLSGLPSLKYLNL 145
            DL  N           + S    ++ +  
Sbjct: 242 FDLRGNGFHCGTL--RDFFSKNQRVQTVAK 269

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 45.2 bits (107), Expect = 3e-06
 Identities = 20/119 (16%), Positives = 40/119 (33%), Gaps = 18/119 (15%)

Query: 58  SLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYL 117
            LL    ++ L  + NN             +  + + L+ +  +       G  + + YL
Sbjct: 94  ELLVGPSIETLHAANNNISRVS----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYL 149

Query: 118 DLNNFLDQSNQI----GLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRL 172
           DL       N+I         +   +L++LNL    +       ++   +   L  L L
Sbjct: 150 DLKL-----NEIDTVNFAELAASSDTLEHLNLQYNFIYD-----VKGQVVFAKLKTLDL 198

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.1 bits (104), Expect = 7e-06
 Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 9/94 (9%)

Query: 80  VPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDL-NNFLDQSNQIGLGWLSGLP 138
           + E   +    +   ++ S     +     +  N+  LDL  N L   +QI    L+   
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPL---SQISAADLAPFT 58

Query: 139 SLKYLNLGGADLSKDAAYWLESISMLRSLVELRL 172
            L+ LNL    L +        +  L +L  L L
Sbjct: 59  KLELLNLSSNVLYE-----TLDLESLSTLRTLDL 87

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 41.8 bits (98), Expect = 4e-05
 Identities = 22/115 (19%), Positives = 35/115 (30%), Gaps = 16/115 (13%)

Query: 58  SLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYL 117
            L     L+ L+LS N        +   SL  LR L+L+ ++        L    ++  L
Sbjct: 53  DLAPFTKLELLNLSSNVLYE--TLDL-ESLSTLRTLDLNNNYVQ-----ELLVGPSIETL 104

Query: 118 DLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRL 172
              N     N I     S     K + L    ++               +  L L
Sbjct: 105 HAAN-----NNISRVSCSRGQGKKNIYLANNKITMLRD---LDEGCRSRVQYLDL 151

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 41.4 bits (97), Expect = 6e-05
 Identities = 17/125 (13%), Positives = 45/125 (36%), Gaps = 12/125 (9%)

Query: 54  PISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTN 113
             +        L++L+L  N      V   +    +L+ L+LS +  +  +     +   
Sbjct: 160 NFAELAASSDTLEHLNLQYNFIY--DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAG 215

Query: 114 LLYLDLNNFLDQSNQIGL--GWLSGLPSLKYLNLGGADLSKDAA-YWLESISMLRSLVEL 170
           + ++ L N     N++ L    L    +L++ +L G          +      ++++ + 
Sbjct: 216 VTWISLRN-----NKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270

Query: 171 RLPNC 175
            +   
Sbjct: 271 TVKKL 275

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 53.8 bits (130), Expect = 3e-09
 Identities = 23/121 (19%), Positives = 42/121 (34%), Gaps = 15/121 (12%)

Query: 55  ISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNL 114
           I          K   ++ ++ K         S   ++ L+LSG+  S      L   T L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQAL-ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 115 LYLDLNNFLDQSNQI-GLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLP 173
             L+L++     N +     L  L +L+ L+L    +          + +  S+  L   
Sbjct: 61  ELLNLSS-----NVLYETLDLESLSTLRTLDLNNNYVQ--------ELLVGPSIETLHAA 107

Query: 174 N 174
           N
Sbjct: 108 N 108

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 49.6 bits (119), Expect = 9e-08
 Identities = 21/117 (17%), Positives = 41/117 (35%), Gaps = 13/117 (11%)

Query: 58  SLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYL 117
                  ++YLDL +N        E   S   L +LNL  +F    +   +     L  L
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTL 196

Query: 118 DLNNFLDQSNQIGL--GWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRL 172
           DL++     N++            + +++L    L        +++   ++L    L
Sbjct: 197 DLSS-----NKLAFMGPEFQSAAGVTWISLRNNKLVLIE----KALRFSQNLEHFDL 244

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.4 bits (116), Expect = 2e-07
 Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 17/119 (14%)

Query: 55  ISPSLLQ-LKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTN 113
              SL Q   ++K LDLS N          +    +L  LNLS +         L +L+ 
Sbjct: 25  ALASLRQSAWNVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVLYE--TLDLESLST 81

Query: 114 LLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRL 172
           L  LDLNN     N +    L   PS++ L+    ++S+       S S  +    + L
Sbjct: 82  LRTLDLNN-----NYVQE--LLVGPSIETLHAANNNISR------VSCSRGQGKKNIYL 127

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.5 bits (111), Expect = 9e-07
 Identities = 20/119 (16%), Positives = 40/119 (33%), Gaps = 18/119 (15%)

Query: 58  SLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYL 117
            LL    ++ L  + NN             +  + + L+ +  +       G  + + YL
Sbjct: 94  ELLVGPSIETLHAANNNISRVS----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYL 149

Query: 118 DLNNFLDQSNQI----GLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRL 172
           DL       N+I         +   +L++LNL    +       ++   +   L  L L
Sbjct: 150 DLKL-----NEIDTVNFAELAASSDTLEHLNLQYNFIYD-----VKGQVVFAKLKTLDL 198

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 12/93 (12%)

Query: 57  PSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLY 116
              +    LK LDLS N      +     S   + +++L  +     I ++L    NL +
Sbjct: 185 KGQVVFAKLKTLDLSSNKLA--FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEH 241

Query: 117 LDLNNFLDQSNQIGLG----WLSGLPSLKYLNL 145
            DL       N    G    + S    ++ +  
Sbjct: 242 FDLRG-----NGFHCGTLRDFFSKNQRVQTVAK 269

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 17/96 (17%), Positives = 38/96 (39%), Gaps = 11/96 (11%)

Query: 54  PISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTN 113
             +        L++L+L  N      V   +    +L+ L+LS +  +  +     +   
Sbjct: 160 NFAELAASSDTLEHLNLQYNFIY--DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAG 215

Query: 114 LLYLDLNNFLDQSNQIGL--GWLSGLPSLKYLNLGG 147
           + ++ L N     N++ L    L    +L++ +L G
Sbjct: 216 VTWISLRN-----NKLVLIEKALRFSQNLEHFDLRG 246

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 9/69 (13%), Positives = 22/69 (31%), Gaps = 3/69 (4%)

Query: 55  ISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSG-SFFSGTIPQSLGNLTN 113
           + P       + ++ L  N      + + +   + L + +L G  F  GT+         
Sbjct: 206 MGPEFQSAAGVTWISLRNNKLV--LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263

Query: 114 LLYLDLNNF 122
           +  +     
Sbjct: 264 VQTVAKQTV 272

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 53.9 bits (130), Expect = 3e-09
 Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 16/119 (13%)

Query: 57  PSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLY 116
             L  L  +  L+LS N  K       I  L+ ++ L+L+ +  +   P  L  L+NL  
Sbjct: 79  APLKNLTKITELELSGNPLKNV---SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQV 133

Query: 117 LDLNNFLDQSNQI-GLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPN 174
           L L+      NQI  +  L+GL +L+YL++G A +S      L  ++ L  L  L+  +
Sbjct: 134 LYLDL-----NQITNISPLAGLTNLQYLSIGNAQVSD-----LTPLANLSKLTTLKADD 182

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 46.6 bits (111), Expect = 9e-07
 Identities = 29/123 (23%), Positives = 47/123 (38%), Gaps = 17/123 (13%)

Query: 55  ISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNL 114
           I P    L +   +    +N            L  +  L+  G+  + TI   +  L NL
Sbjct: 12  IFP-DPALANAIKIAAGKSNVTD---TVTQADLDGITTLSAFGTGVT-TIE-GVQYLNNL 65

Query: 115 LYLDLNNFLDQSNQI-GLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLP 173
           + L+L +     NQI  L  L  L  +  L L G  L       + +I+ L+S+  L L 
Sbjct: 66  IGLELKD-----NQITDLAPLKNLTKITELELSGNPLKN-----VSAIAGLQSIKTLDLT 115

Query: 174 NCN 176
           +  
Sbjct: 116 STQ 118

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 11/109 (10%)

Query: 57  PSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLY 116
             L  L +L+YL +             + +L +L  L    +  S  I   L +L NL+ 
Sbjct: 145 SPLAGLTNLQYLSIGNAQVSDL---TPLANLSKLTTLKADDNKIS-DIS-PLASLPNLIE 199

Query: 117 LDLNNFLDQSNQI-GLGWLSGLPSLKYLNLGGADLSKDAAYWLESISML 164
           + L N     NQI  +  L+   +L  + L    ++    ++  ++ + 
Sbjct: 200 VHLKN-----NQISDVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVP 243

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 53.2 bits (128), Expect = 5e-09
 Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 6/116 (5%)

Query: 55  ISPSLLQ-LKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIP-QSLGNLT 112
           +S S    L  LKYL+L  N ++   V     +L  L+ L +        I       LT
Sbjct: 89  LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148

Query: 113 NLLYLDL-NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSL 167
           +L  L++    L          L  +  + +L L  ++ +     + + +S +R L
Sbjct: 149 SLNELEIKALSL---RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYL 201

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 20/123 (16%), Positives = 43/123 (34%), Gaps = 2/123 (1%)

Query: 54  PISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTN 113
            ++     L +L+ L +                L  L  L +          QSL ++ +
Sbjct: 114 GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD 173

Query: 114 LLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLP 173
           + +L L+    +S  +   +   L S++YL L   +L++     L    +   + +L   
Sbjct: 174 IHHLTLHL--SESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR 231

Query: 174 NCN 176
              
Sbjct: 232 GSV 234

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 51.3 bits (123), Expect = 3e-08
 Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 3/111 (2%)

Query: 58  SLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSG-SFFSGTIPQSLGNLTNLLY 116
           +   L  L++LDLS N+        + G L  L+YLNL G  + +  +     NLTNL  
Sbjct: 69  AFYSLGSLEHLDLSDNHLSSLS-SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127

Query: 117 LDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSL 167
           L + N     ++I     +GL SL  L +    L    +  L+SI  +  L
Sbjct: 128 LRIGNVE-TFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.5 bits (121), Expect = 5e-08
 Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 7/114 (6%)

Query: 64  DLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDL-NNF 122
            +K LDLS N          + +   L+ L L  S  +     +  +L +L +LDL +N 
Sbjct: 27  AMKSLDLSFNKITYIG-HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85

Query: 123 LDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176
           L   + +   W   L SLKYLNL G                L +L  LR+ N  
Sbjct: 86  L---SSLSSSWFGPLSSLKYLNLMGNPYQTLGV--TSLFPNLTNLQTLRIGNVE 134

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 19/120 (15%), Positives = 40/120 (33%), Gaps = 3/120 (2%)

Query: 58  SLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYL 117
             ++   ++ L +                L++++ + +  S           +L +L +L
Sbjct: 281 GKVETVTIRRLHIPQFYLFYDL-STVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFL 339

Query: 118 DL-NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176
           DL  N + +            PSL+ L L    L        E +  L++L  L +    
Sbjct: 340 DLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTG-EILLTLKNLTSLDISRNT 398

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.7 bits (106), Expect = 4e-06
 Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 6/116 (5%)

Query: 58  SLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYL 117
            L    +L+ L L  +     +  +   SL  L +L+LS +  S       G L++L YL
Sbjct: 45  DLRACANLQVLILKSSRINTIE-GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103

Query: 118 DL-NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRL 172
           +L  N         L     L +L+ L +G  +   +        + L SL EL +
Sbjct: 104 NLMGNPYQTLGVTSL--FPNLTNLQTLRIGNVETFSEIR--RIDFAGLTSLNELEI 155

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.7 bits (106), Expect = 5e-06
 Identities = 28/128 (21%), Positives = 47/128 (36%), Gaps = 14/128 (10%)

Query: 50  ELGGPISPSLLQLKDLKYLDLSMNNFKGF-KVPEFIGSLKELRYLNLSGSFFSGTIPQSL 108
           E     S        L+ L LS N+ +   K  E + +LK L  L++S + F   +P S 
Sbjct: 348 EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSC 406

Query: 109 GNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLV 168
                + +L+L      S  I +       +L+ L++   +L             L  L 
Sbjct: 407 QWPEKMRFLNL-----SSTGIRVVKTCIPQTLEVLDVSNNNLD-------SFSLFLPRLQ 454

Query: 169 ELRLPNCN 176
           EL +    
Sbjct: 455 ELYISRNK 462

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 16/115 (13%)

Query: 58  SLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYL 117
            LL LK+L  LD+S N F     P+     +++R+LNLS +     +         L  L
Sbjct: 382 ILLTLKNLTSLDISRNTFHPM--PDSCQWPEKMRFLNLSSTGIR-VVKT--CIPQTLEVL 436

Query: 118 DLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRL 172
           D++N     N +   +   LP L+ L +    L       L   S+   L+ +++
Sbjct: 437 DVSN-----NNLD-SFSLFLPRLQELYISRNKLKT-----LPDASLFPVLLVMKI 480

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 18/110 (16%), Positives = 34/110 (30%), Gaps = 22/110 (20%)

Query: 55  ISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLT-- 112
           +  S    + +++L+LS    +           + L  L++S +    +    L  L   
Sbjct: 402 MPDSCQWPEKMRFLNLSSTGIRVV----KTCIPQTLEVLDVSNNNLD-SFSLFLPRLQEL 456

Query: 113 -----NLLYLDLNNFLDQ-------SNQIG---LGWLSGLPSLKYLNLGG 147
                 L  L   +            NQ+     G    L SL+ + L  
Sbjct: 457 YISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHT 506

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.8 bits (127), Expect = 7e-09
 Identities = 28/121 (23%), Positives = 44/121 (36%), Gaps = 12/121 (9%)

Query: 55  ISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNL 114
           ++P+ L   +L  L ++  N         +  L  LR+LNLS +  S      L  L  L
Sbjct: 216 MTPNCLYGLNLTSLSITHCNLTAVP-YLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRL 274

Query: 115 LYLDLNNFLDQSNQIG---LGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELR 171
             + L        Q+         GL  L+ LN+ G  L+            + +L  L 
Sbjct: 275 QEIQLVG-----GQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEE---SVFHSVGNLETLI 326

Query: 172 L 172
           L
Sbjct: 327 L 327

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 34/120 (28%), Positives = 50/120 (41%), Gaps = 9/120 (7%)

Query: 55  ISPSLLQ-LKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTN 113
           + P     L +L+ L L  N  K   +  F G L  L  L++S +     +     +L N
Sbjct: 71  VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTG-LSNLTKLDISENKIVILLDYMFQDLYN 129

Query: 114 LLYLDL-NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRL 172
           L  L++ +N L     I     SGL SL+ L L   +L+      L     L  L+ LRL
Sbjct: 130 LKSLEVGDNDL---VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSH---LHGLIVLRL 183

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 49.7 bits (119), Expect = 8e-08
 Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 12/112 (10%)

Query: 64  DLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFL 123
           + + LDL  N  K     EF      L  L L+ +  S   P +  NL NL  L L +  
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFAS-FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS-- 89

Query: 124 DQSNQIGL---GWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRL 172
              N++ L   G  +GL +L  L++    +     Y  +    L +L  L +
Sbjct: 90  ---NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQD---LYNLKSLEV 135

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 24/108 (22%), Positives = 37/108 (34%), Gaps = 7/108 (6%)

Query: 62  LKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDL-- 119
           L  L+ L L   N            L  L  L L     +     S   L  L  L++  
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSH-LHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209

Query: 120 NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSL 167
             +LD    +    L GL +L  L++   +L+      +  +  LR L
Sbjct: 210 WPYLD---TMTPNCLYGL-NLTSLSITHCNLTAVPYLAVRHLVYLRFL 253

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.4 bits (121), Expect = 1e-08
 Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 6/113 (5%)

Query: 59  LLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLD 118
             + ++L++L               +  L +L+ L LS +  SG +        NL +L+
Sbjct: 38  TDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94

Query: 119 L-NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVEL 170
           L  N +   + I    L  L +LK L+L   +++    Y      +L  L  L
Sbjct: 95  LSGNKIKDLSTIE--PLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 50.2 bits (120), Expect = 6e-08
 Identities = 26/175 (14%), Positives = 61/175 (34%), Gaps = 8/175 (4%)

Query: 6   FALSDLHLLSRIFALSLLRCCSVGSALAQPFRDSFD-----TYEDDAGHELGGPISPSLL 60
             +  L   + ++  S+      G    + F  S       +         G P S    
Sbjct: 238 IRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYE 297

Query: 61  QLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLN 120
              ++   + +++  +   +      +    +L+ S +  + T+ ++ G+LT L  L L 
Sbjct: 298 IFSNMNIKNFTVSGTRMVHMLCP-SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ 356

Query: 121 NFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNC 175
               +         + + SL+ L++    +S D        S  +SL+ L + + 
Sbjct: 357 MNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK--GDCSWTKSLLSLNMSSN 409

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.8 bits (98), Expect = 5e-05
 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 5/92 (5%)

Query: 54  PISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTN 113
            I+    Q+K L+ LD+S N+    +        K L  LN+S +  + TI + L     
Sbjct: 365 KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIK 424

Query: 114 LLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNL 145
           +L L  N       Q+       L +L+ LN+
Sbjct: 425 VLDLHSNKIKSIPKQV-----VKLEALQELNV 451

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 6/85 (7%)

Query: 63  KDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNF 122
           +    L++S N        +   SL +LR L +S +               L YLDL++ 
Sbjct: 21  QKTTILNISQNYISELWTSDI-LSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH- 78

Query: 123 LDQSNQIGLGWLSGLPSLKYLNLGG 147
               N++         +LK+L+L  
Sbjct: 79  ----NKLVKISCHPTVNLKHLDLSF 99

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 20/116 (17%), Positives = 43/116 (37%), Gaps = 1/116 (0%)

Query: 62  LKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNL-LYLDLN 120
             +LK+LDLS N F    + +  G++ +L++L LS +    +    + +L    + L L 
Sbjct: 89  TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLG 148

Query: 121 NFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176
               +             SL  +     +        +++++ L       +   N
Sbjct: 149 ETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDN 204

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 5/114 (4%)

Query: 62  LKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNN 121
           L  L+ L +S N  +   +  F    +EL YL+LS +        S     NL +LDL+ 
Sbjct: 44  LSKLRILIISHNRIQYLDISVF-KFNQELEYLDLSHNKLVKI---SCHPTVNLKHLDLSF 99

Query: 122 FLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNC 175
               +  I       +  LK+L L    L K +   +  +++ + L+ L     
Sbjct: 100 NAFDALPIC-KEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYG 152

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 10/86 (11%)

Query: 61  QLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSG-SFFSGTIPQSLGNLTNLLYLDL 119
             ++L+YLDLS N                L++L+LS  +F +  I +  GN++ L +L L
Sbjct: 67  FNQELEYLDLSHNKLVKI----SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGL 122

Query: 120 NNFLDQSNQIGLGWLSGLPSLKYLNL 145
           +        +    +  +  L    +
Sbjct: 123 ST-----THLEKSSVLPIAHLNISKV 143

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 49.3 bits (118), Expect = 6e-08
 Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 14/120 (11%)

Query: 59  LLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLD 118
           L  +++L+ L L  N  K  K+         L  L +S +  + ++   +  L NL  L 
Sbjct: 66  LSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLY 121

Query: 119 L-NNFLDQSNQIGLGWLSGLPSLKYLNLGG-------ADLSKDAAYWLESISMLRSLVEL 170
           + NN +    +I    L+ L  L+ L L G        + +  + Y +E +  L +L +L
Sbjct: 122 MSNNKITNWGEIDK--LAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 24/117 (20%), Positives = 44/117 (37%), Gaps = 14/117 (11%)

Query: 60  LQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDL 119
           +   + + ++L        K+   + +LK  ++L LS +     I  SL  + NL  L L
Sbjct: 20  VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSL 77

Query: 120 NNFLDQSNQIGL--GWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPN 174
                  N I       +   +L+ L +    ++      L  I  L +L  L + N
Sbjct: 78  -----GRNLIKKIENLDAVADTLEELWISYNQIAS-----LSGIEKLVNLRVLYMSN 124

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 36/123 (29%), Positives = 52/123 (42%), Gaps = 17/123 (13%)

Query: 55  ISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNL 114
           I P L  LK+L +L L  N  K       +  LK+L+ L+L  +  S  I   L +L  L
Sbjct: 83  IKP-LANLKNLGWLFLDENKVKDL---SSLKDLKKLKSLSLEHNGIS-DIN-GLVHLPQL 136

Query: 115 LYLDLNNFLDQSNQI-GLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLP 173
             L L N     N+I  +  LS L  L  L+L    +S      +  ++ L  L  L L 
Sbjct: 137 ESLYLGN-----NKITDITVLSRLTKLDTLSLEDNQISD-----IVPLAGLTKLQNLYLS 186

Query: 174 NCN 176
             +
Sbjct: 187 KNH 189

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.4 bits (113), Expect = 5e-07
 Identities = 22/123 (17%), Positives = 42/123 (34%), Gaps = 17/123 (13%)

Query: 55  ISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNL 114
           I        +    +L   +            L  +  +  + S    ++ Q +  L N+
Sbjct: 17  IFS-DDAFAETIKDNLKKKSVTD---AVTQNELNSIDQIIANNSDIK-SV-QGIQYLPNV 70

Query: 115 LYLDLNNFLDQSNQIG-LGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLP 173
             L LN      N++  +  L+ L +L +L L    +       L S+  L+ L  L L 
Sbjct: 71  TKLFLNG-----NKLTDIKPLANLKNLGWLFLDENKVKD-----LSSLKDLKKLKSLSLE 120

Query: 174 NCN 176
           +  
Sbjct: 121 HNG 123

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 24/124 (19%), Positives = 40/124 (32%), Gaps = 14/124 (11%)

Query: 58  SLLQLKDLKYLDLSMNNFKGFKVPEFIGS-LKELRYLNLSGSFFSGTIPQSLGNLTNLLY 116
              +L  L  L LS N                 L+YL+LS +    T+  +   L  L +
Sbjct: 47  VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEH 105

Query: 117 LDLNNFLDQSNQIG----LGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRL 172
           LD  +     + +           L +L YL++                  L SL  L++
Sbjct: 106 LDFQH-----SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG---LSSLEVLKM 157

Query: 173 PNCN 176
              +
Sbjct: 158 AGNS 161

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 11/122 (9%)

Query: 55  ISPSLLQ-LKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTN 113
               +   L  L+ L ++ N+F+   +P+    L+ L +L+LS        P +  +L++
Sbjct: 141 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 200

Query: 114 LLYLDLNNFLDQSNQIGL---GWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVEL 170
           L  L++++     N            L SL+ L+     +       L+      SL  L
Sbjct: 201 LQVLNMSH-----NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ--HFPSSLAFL 253

Query: 171 RL 172
            L
Sbjct: 254 NL 255

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 22/113 (19%), Positives = 35/113 (30%), Gaps = 5/113 (4%)

Query: 64  DLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFL 123
             + + L  N         F    + L  L L  +  +     +   L  L  LDL++  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRA-CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 124 DQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176
            Q   +      GL  L  L+L    L +           L +L  L L +  
Sbjct: 92  -QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG---LAALQYLYLQDNA 140

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 26/110 (23%), Positives = 38/110 (34%), Gaps = 10/110 (9%)

Query: 62  LKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQS-LGNLTNLLYLDLN 120
            ++L  L L  N         F G L  L  L+LS +    ++  +    L  L  L L+
Sbjct: 55  CRNLTILWLHSNVLARIDAAAFTG-LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD 113

Query: 121 NFLDQSNQ---IGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSL 167
                      +G G   GL +L+YL L    L          +  L  L
Sbjct: 114 R-----CGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 158

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 29/118 (24%), Positives = 41/118 (34%), Gaps = 12/118 (10%)

Query: 62  LKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNN 121
           L  L  L L     +      F G L  L+YL L  +        +  +L NL +L L+ 
Sbjct: 104 LGRLHTLHLDRCGLQELGPGLFRG-LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG 162

Query: 122 FLDQSNQI---GLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176
                N+I         GL SL  L L    ++        +   L  L+ L L   N
Sbjct: 163 -----NRISSVPERAFRGLHSLDRLLLHQNRVAHVHP---HAFRDLGRLMTLYLFANN 212

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 9/89 (10%)

Query: 62  LKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNN 121
           L +L +L L  N         F G L  L  L L  +  +   P +  +L  L+ L L  
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRG-LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 122 FLDQSNQI---GLGWLSGLPSLKYLNLGG 147
                N +       L+ L +L+YL L  
Sbjct: 211 -----NNLSALPTEALAPLRALQYLRLND 234

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.0 bits (114), Expect = 4e-07
 Identities = 22/119 (18%), Positives = 47/119 (39%), Gaps = 13/119 (10%)

Query: 58  SLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYL 117
             ++++ L+ L +S N      +  +   +  L+ L+LS +     + ++      L  L
Sbjct: 273 PFVKMQRLERLYISNNRLV--ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL 329

Query: 118 DLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176
            L++     N I    LS   +LK L L   D   ++   L      R++    + + +
Sbjct: 330 YLDH-----NSIVTLKLSTHHTLKNLTLSHNDWDCNSLRAL-----FRNVARPAVDDAD 378

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.5 bits (110), Expect = 1e-06
 Identities = 18/117 (15%), Positives = 34/117 (29%), Gaps = 9/117 (7%)

Query: 54  PISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTN 113
                 + L + K +    +  +       + S +++  LNL+          +      
Sbjct: 42  YFGFEDITLNNQKIVTFKNSTMRKLP-AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHT 100

Query: 114 LLYLDLNNFLDQSNQIGL---GWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSL 167
           +  L +       N I          +P L  L L   DLS        +   L +L
Sbjct: 101 IQKLYMGF-----NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 152

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.5 bits (105), Expect = 5e-06
 Identities = 23/118 (19%), Positives = 39/118 (33%), Gaps = 15/118 (12%)

Query: 57  PSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLY 116
             LL    L  +DLS N  +      F+  ++ L  L +S +     +      +  L  
Sbjct: 248 AWLLNYPGLVEVDLSYNELEKIMYHPFVK-MQRLERLYISNNRLV-ALNLYGQPIPTLKV 305

Query: 117 LDLNNFLDQSNQIGL--GWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRL 172
           LDL++     N +            L+ L L    +          +S   +L  L L
Sbjct: 306 LDLSH-----NHLLHVERNQPQFDRLENLYLDHNSIVT------LKLSTHHTLKNLTL 352

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 42.6 bits (100), Expect = 2e-05
 Identities = 14/93 (15%), Positives = 28/93 (30%), Gaps = 9/93 (9%)

Query: 58  SLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYL 117
            L   + ++ L+L+    +             ++ L +  +      P    N+  L  L
Sbjct: 70  LLDSFRQVELLNLNDLQIEEID-TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128

Query: 118 DLNNFLDQSNQIGL---GWLSGLPSLKYLNLGG 147
            L       N +     G     P L  L++  
Sbjct: 129 VLER-----NDLSSLPRGIFHNTPKLTTLSMSN 156

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 42.2 bits (99), Expect = 4e-05
 Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 15/123 (12%)

Query: 55  ISPSLLQ-LKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTN 113
           + P + Q +  L  L L  N+        F     +L  L++S +        +    T+
Sbjct: 114 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN-TPKLTTLSMSNNNLERIEDDTFQATTS 172

Query: 114 LLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLP 173
           L  L L++     N++    LS +PSL + N+    LS        ++++  ++ EL   
Sbjct: 173 LQNLQLSS-----NRLTHVDLSLIPSLFHANVSYNLLS--------TLAIPIAVEELDAS 219

Query: 174 NCN 176
           + +
Sbjct: 220 HNS 222

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.1 bits (96), Expect = 7e-05
 Identities = 14/117 (11%), Positives = 38/117 (32%), Gaps = 11/117 (9%)

Query: 57  PSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLY 116
                  D+     + + + GF+      +L   + +    S         L +   +  
Sbjct: 24  QYDCVFYDVHIDMQTQDVYFGFE----DITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 79

Query: 117 LDL-NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRL 172
           L+L +  +    +I     +   +++ L +G   +     +  ++   +  L  L L
Sbjct: 80  LNLNDLQI---EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN---VPLLTVLVL 130

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 26/131 (19%), Positives = 42/131 (32%), Gaps = 27/131 (20%)

Query: 55  ISPSLLQ-LKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTN 113
           I     Q    L+ L LS N          +  +  L + N+S +  S     +L     
Sbjct: 162 IEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNLLS-----TLAIPIA 212

Query: 114 LLYLDLNN---------------FLD-QSNQI-GLGWLSGLPSLKYLNLGGADLSKDAAY 156
           +  LD ++                L  Q N +    WL   P L  ++L   +L K   +
Sbjct: 213 VEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYH 272

Query: 157 WLESISMLRSL 167
               +  L  L
Sbjct: 273 PFVKMQRLERL 283

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 38.4 bits (89), Expect = 7e-04
 Identities = 24/107 (22%), Positives = 34/107 (31%), Gaps = 11/107 (10%)

Query: 55  ISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNL 114
           ++     +  LK LDLS N+     V         L  L L  +    T+   L     L
Sbjct: 293 LNLYGQPIPTLKVLDLSHNHLL--HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTL 347

Query: 115 LYLDLNNFLDQSNQIGLGWLSGLPS-LKYLNLGGADLSKDAAYWLES 160
             L L++     N      L  L   +    +  AD      Y LE 
Sbjct: 348 KNLTLSH-----NDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEH 389

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.8 bits (111), Expect = 8e-07
 Identities = 24/104 (23%), Positives = 30/104 (28%), Gaps = 11/104 (10%)

Query: 56  SPSLLQLKDLKYLDLSMNNFKGFK------VPEFIGSLKELRYLNLSGSFFSGTIPQSLG 109
              +     L  LDLS N   G +       P    +L+ L   N      SG       
Sbjct: 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA 225

Query: 110 NLTNLLYLDL--NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLS 151
               L  LDL  N+     +  G         L  LNL    L 
Sbjct: 226 ARVQLQGLDLSHNSL---RDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 9/98 (9%)

Query: 51  LGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGN 110
             G  S        L+ LDLS N+ +            +L  LNLS +     +P+ L  
Sbjct: 216 PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL-- 272

Query: 111 LTNLLYLDLNNFLDQSNQI-GLGWLSGLPSLKYLNLGG 147
              L  LDL+      N++        LP +  L+L G
Sbjct: 273 PAKLSVLDLSY-----NRLDRNPSPDELPQVGNLSLKG 305

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 25/130 (19%), Positives = 44/130 (33%), Gaps = 7/130 (5%)

Query: 50  ELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSL-----KELRYLNLSGSFFSGTI 104
           E+ G   P LL+        L++ N        ++  L       L+ L+++ +      
Sbjct: 106 EVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFS 165

Query: 105 PQSLGNLTNLLYLDL--NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESIS 162
            + +     L  LDL  N  L +   I        P+L+ L L  A +   +       +
Sbjct: 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA 225

Query: 163 MLRSLVELRL 172
               L  L L
Sbjct: 226 ARVQLQGLDL 235

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.5 bits (111), Expect = 8e-07
 Identities = 31/135 (22%), Positives = 45/135 (33%), Gaps = 25/135 (18%)

Query: 63  KDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDL-NN 121
            D   LDL  N     K  +F   LK L  L L  +  S   P +   L  L  L L  N
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKN-LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110

Query: 122 FLD---------------QSNQIGL---GWLSGLPSLKYLNLGGADLSKDAAYWLES--I 161
            L                  N+I        +GL  +  + LG   L       +E+   
Sbjct: 111 QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS---GIENGAF 167

Query: 162 SMLRSLVELRLPNCN 176
             ++ L  +R+ + N
Sbjct: 168 QGMKKLSYIRIADTN 182

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 10/113 (8%)

Query: 62  LKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNN 121
           L  L+ L LS N  K  ++PE     K L+ L +  +  +         L  ++ ++L  
Sbjct: 99  LVKLERLYLSKNQLK--ELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT 154

Query: 122 FLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPN 174
              +S+ I  G   G+  L Y+ +   +++           +  SL EL L  
Sbjct: 155 NPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ------GLPPSLTELHLDG 201

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 18/128 (14%)

Query: 55  ISPSLLQ-LKDLKYLDLSMNNFKGFKVPE--FIGSLKELRYLNLSGSFFSGTIPQSLGNL 111
           +  S+   L  +  ++L  N  K   +    F G +K+L Y+ ++ +  + TIPQ L   
Sbjct: 136 VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG-MKKLSYIRIADTNIT-TIPQGL--P 191

Query: 112 TNLLYLDLNNFLDQSNQI---GLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLV 168
            +L  L L+      N+I       L GL +L  L L    +S        S++    L 
Sbjct: 192 PSLTELHLDG-----NKITKVDAASLKGLNNLAKLGLSFNSISAVDN---GSLANTPHLR 243

Query: 169 ELRLPNCN 176
           EL L N  
Sbjct: 244 ELHLNNNK 251

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.6 bits (106), Expect = 5e-06
 Identities = 21/126 (16%), Positives = 43/126 (34%), Gaps = 17/126 (13%)

Query: 58  SLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYL 117
           SL  L +L  L LS N+               LR L+L+ +     +P  L +   +  +
Sbjct: 211 SLKGLNNLAKLGLSFNSISAVDNGSLAN-TPHLRELHLNNNKLV-KVPGGLADHKYIQVV 268

Query: 118 DLNN----FLDQSNQIGLGWLSGLPSLKYLNLGG-----ADLSKDAAYWLESISMLRSLV 168
            L+N     +  ++    G+ +   S   ++L        ++             +    
Sbjct: 269 YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST------FRCVYVRA 322

Query: 169 ELRLPN 174
            ++L N
Sbjct: 323 AVQLGN 328

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 46.6 bits (111), Expect = 9e-07
 Identities = 20/111 (18%), Positives = 43/111 (38%), Gaps = 9/111 (8%)

Query: 58  SLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYL 117
             ++++ L+ L +S N      +  +   +  L+ L+LS +     + ++      L  L
Sbjct: 267 PFVKMQRLERLYISNNRLV--ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL 323

Query: 118 DLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDA-AYWLESISMLRSL 167
            L++     N I    LS   +LK L L   D   ++      +++     
Sbjct: 324 YLDH-----NSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVD 369

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 18/115 (15%), Positives = 34/115 (29%), Gaps = 9/115 (7%)

Query: 56  SPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLL 115
               + L + K +    +  +       + S +++  LNL+          +      + 
Sbjct: 38  GFEDITLNNQKIVTFKNSTMRKLP-AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ 96

Query: 116 YLDLNNFLDQSNQIGL---GWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSL 167
            L +       N I          +P L  L L   DLS        +   L +L
Sbjct: 97  KLYMGF-----NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 146

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 9/93 (9%)

Query: 57  PSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLY 116
             LL    L  +DLS N  +      F+  ++ L  L +S +     +      +  L  
Sbjct: 242 AWLLNYPGLVEVDLSYNELEKIMYHPFVK-MQRLERLYISNNRLV-ALNLYGQPIPTLKV 299

Query: 117 LDLNNFLDQSNQIGL--GWLSGLPSLKYLNLGG 147
           LDL++     N +            L+ L L  
Sbjct: 300 LDLSH-----NHLLHVERNQPQFDRLENLYLDH 327

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 9/113 (7%)

Query: 58  SLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYL 117
            L   + ++ L+L+    +             ++ L +  +      P    N+  L  L
Sbjct: 64  LLDSFRQVELLNLNDLQIEEID-TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122

Query: 118 DLNNFLDQSNQIGL---GWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSL 167
            L       N +     G     P L  L++   +L +      ++ + L++L
Sbjct: 123 VLER-----NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 170

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 41.2 bits (97), Expect = 8e-05
 Identities = 15/116 (12%), Positives = 38/116 (32%), Gaps = 8/116 (6%)

Query: 58  SLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYL 117
           +L        + + M     +   E I +L   + +    S         L +   +  L
Sbjct: 16  NLQYDCVFYDVHIDMQTQDVYFGFEDI-TLNNQKIVTFKNSTMRKLPAALLDSFRQVELL 74

Query: 118 DL-NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRL 172
           +L +  +    +I     +   +++ L +G   +     +  ++   +  L  L L
Sbjct: 75  NLNDLQI---EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN---VPLLTVLVL 124

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 26/131 (19%), Positives = 42/131 (32%), Gaps = 27/131 (20%)

Query: 55  ISPSLLQ-LKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTN 113
           I     Q    L+ L LS N          +  +  L + N+S +  S     +L     
Sbjct: 156 IEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNLLS-----TLAIPIA 206

Query: 114 LLYLDLNN---------------FLD-QSNQI-GLGWLSGLPSLKYLNLGGADLSKDAAY 156
           +  LD ++                L  Q N +    WL   P L  ++L   +L K   +
Sbjct: 207 VEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYH 266

Query: 157 WLESISMLRSL 167
               +  L  L
Sbjct: 267 PFVKMQRLERL 277

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 26/124 (20%)

Query: 57  PSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLY 116
           P L     LK +D+  N+ K  K+P+   S   L ++    +     +P  L NL  L  
Sbjct: 147 PELQNSSFLKIIDVDNNSLK--KLPDLPPS---LEFIAAGNNQLE-ELP-ELQNLPFLTA 199

Query: 117 LDLNNFLDQSNQIGLGWLSGLP----SLKYLNLGGADLSKDAAYWLESISMLRSLVELRL 172
           +  +N     N      L  LP    SL+ +  G   L +     L  +  L  L  +  
Sbjct: 200 IYADN-----NS-----LKKLPDLPLSLESIVAGNNILEE-----LPELQNLPFLTTIYA 244

Query: 173 PNCN 176
            N  
Sbjct: 245 DNNL 248

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.8 bits (104), Expect = 9e-06
 Identities = 28/130 (21%), Positives = 45/130 (34%), Gaps = 28/130 (21%)

Query: 62  LKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQ--------------- 106
              L+ L  S N+    ++PE   SLK L   N +    S   P                
Sbjct: 90  PPHLESLVASCNSLT--ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP 147

Query: 107 SLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRS 166
            L N + L  +D++N     N +        PSL+++  G   L +     L  +  L  
Sbjct: 148 ELQNSSFLKIIDVDN-----NSLK-KLPDLPPSLEFIAAGNNQLEE-----LPELQNLPF 196

Query: 167 LVELRLPNCN 176
           L  +   N +
Sbjct: 197 LTAIYADNNS 206

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 24/120 (20%), Positives = 41/120 (34%), Gaps = 22/120 (18%)

Query: 57  PSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLY 116
           P L  L  L  +    N  K   +P+   SL+ L   +   +     +P+   +LT L  
Sbjct: 231 PELQNLPFLTTIYADNNLLK--TLPDLPPSLEALNVRDNYLT----DLPELPQSLTFLDV 284

Query: 117 LDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176
            +        + +        P+L YLN    ++            +  SL EL + N  
Sbjct: 285 SEN-----IFSGLS----ELPPNLYYLNASSNEIR-------SLCDLPPSLEELNVSNNK 328

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 45.3 bits (107), Expect = 3e-06
 Identities = 23/112 (20%), Positives = 45/112 (40%)

Query: 65  LKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLD 124
           ++++DLS +  +   +   +    +L+ L+L G   S  I  +L   +NL+ L+L+    
Sbjct: 95  VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG 154

Query: 125 QSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176
            S       LS    L  LNL       +    +    +  ++ +L L    
Sbjct: 155 FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 37.9 bits (88), Expect = 8e-04
 Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 7/124 (5%)

Query: 58  SLLQLKDLKYLDLSM-NNFKGFKVPEFIGSLKELRYLNLSG--SFFSGTIPQSLG-NLTN 113
           +L +  +L  L+LS  + F  F +   + S   L  LNLS    F    +  ++      
Sbjct: 137 TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET 196

Query: 114 LLYLDLNNFLDQSNQIGLGWLS-GLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRL 172
           +  L+L+ +     +  L  L    P+L +L+L  + + K+     +    L  L  L L
Sbjct: 197 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC--FQEFFQLNYLQHLSL 254

Query: 173 PNCN 176
             C 
Sbjct: 255 SRCY 258

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 23/114 (20%), Positives = 47/114 (41%), Gaps = 11/114 (9%)

Query: 58  SLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYL 117
           + +    L  L L  N  +     + +  LK L  L++  +    +I   LG L+ L  L
Sbjct: 101 NGIPSACLSRLFLDNNELRDT---DSLIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVL 155

Query: 118 DLNNFLDQSNQIG-LGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVEL 170
           DL+      N+I   G L+ L  + +++L G     +   +   + +  ++ + 
Sbjct: 156 DLHG-----NEITNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDP 204

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.9 bits (104), Expect = 7e-06
 Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 19/122 (15%)

Query: 57  PSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLY 116
            S  +L  ++  +   +N +       +     L+ L+LS +  S   P  L +LT L  
Sbjct: 35  VSQKELSGVQNFNGDNSNIQSL---AGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEE 89

Query: 117 LDLNNFLDQSNQIGLGWLSGL--PSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPN 174
           L +N      N++    L+G+    L  L L   +L        +S+  L++L  L + N
Sbjct: 90  LSVNR-----NRLKN--LNGIPSACLSRLFLDNNELRD-----TDSLIHLKNLEILSIRN 137

Query: 175 CN 176
             
Sbjct: 138 NK 139

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 20/90 (22%), Positives = 30/90 (33%)

Query: 58  SLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYL 117
           S  +L+DL++L +                L  L  L L  + F      +   L NL  L
Sbjct: 49  SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108

Query: 118 DLNNFLDQSNQIGLGWLSGLPSLKYLNLGG 147
            L         +   +   L SL+ L L  
Sbjct: 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRD 138

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 41.7 bits (98), Expect = 5e-05
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 10/86 (11%)

Query: 64  DLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQ-SLGNLTNLLYLDLNNF 122
            + Y+DLS+N+        F   L++L++L +        I   +   L++L+ L L+  
Sbjct: 31  HVNYVDLSLNSIAELNETSFSR-LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY- 88

Query: 123 LDQSNQIG---LGWLSGLPSLKYLNL 145
               NQ      G  +GL +L+ L L
Sbjct: 89  ----NQFLQLETGAFNGLANLEVLTL 110

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 45.2 bits (107), Expect = 3e-06
 Identities = 28/116 (24%), Positives = 42/116 (36%), Gaps = 11/116 (9%)

Query: 64  DLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFL 123
               LDLS NN    +       L  L  L LS +  +    ++   + NL YLDL++  
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS-- 97

Query: 124 DQSNQI-GLGW--LSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176
              N +  L     S L +L+ L L    +        E    +  L +L L    
Sbjct: 98  ---NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED---MAQLQKLYLSQNQ 147

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.1 bits (99), Expect = 3e-05
 Identities = 28/118 (23%), Positives = 43/118 (36%), Gaps = 13/118 (11%)

Query: 61  QLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLN 120
            + +L+YLDLS N+        F   L+ L  L L  +        +  ++  L  L L+
Sbjct: 86  PVPNLRYLDLSSNHLHTLDEFLFSD-LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLS 144

Query: 121 NFLDQSNQI------GLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRL 172
                 NQI       +   + LP L  L+L    L K     L+ +        L L
Sbjct: 145 Q-----NQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNG-LYL 196

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 28/119 (23%), Positives = 42/119 (35%), Gaps = 17/119 (14%)

Query: 58  SLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYL 117
           S  QL  L  LD   ++         I  L  L  L  + +  + T+   L   TNL YL
Sbjct: 37  SEEQLATLTSLDCHNSSITDMT---GIEKLTGLTKLICTSNNIT-TLD--LSQNTNLTYL 90

Query: 118 DLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176
             ++     N++    ++ L  L YLN     L+K        +S    L  L      
Sbjct: 91  ACDS-----NKLTNLDVTPLTKLTYLNCDTNKLTKL------DVSQNPLLTYLNCARNT 138

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 24/119 (20%), Positives = 41/119 (34%), Gaps = 17/119 (14%)

Query: 58  SLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYL 117
            +  L  L Y D S+N          + +L +L  L+   +     I   L + T L+Y 
Sbjct: 228 DVTPLTQLTYFDCSVNPLTELD----VSTLSKLTTLHCIQTDLL-EID--LTHNTQLIYF 280

Query: 118 DLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176
                     +I    ++    L  L+   A +++        +S    LV L L N  
Sbjct: 281 QAEGC----RKIKELDVTHNTQLYLLDCQAAGITEL------DLSQNPKLVYLYLNNTE 329

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.2 bits (97), Expect = 8e-05
 Identities = 25/120 (20%), Positives = 41/120 (34%), Gaps = 18/120 (15%)

Query: 57  PSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLY 116
             + +L  L  L  + NN         +     L YL    +  +  +   +  LT L Y
Sbjct: 58  TGIEKLTGLTKLICTSNNITTLD----LSQNTNLTYLACDSNKLT-NLD--VTPLTKLTY 110

Query: 117 LDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176
           L+ +      N++    +S  P L YLN     L++        +S    L EL      
Sbjct: 111 LNCDT-----NKLTKLDVSQNPLLTYLNCARNTLTEI------DVSHNTQLTELDCHLNK 159

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 20/119 (16%), Positives = 36/119 (30%), Gaps = 17/119 (14%)

Query: 58  SLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYL 117
            + Q   L YL+ + N          +    +L  L+             +   T L  L
Sbjct: 122 DVSQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHL--NKKITKLDVTPQTQLTTL 175

Query: 118 DLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176
           D +      N+I    +S    L  LN    +++K        ++    L  L   +  
Sbjct: 176 DCSF-----NKITELDVSQNKLLNRLNCDTNNITK------LDLNQNIQLTFLDCSSNK 223

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 24/138 (17%), Positives = 42/138 (30%), Gaps = 31/138 (22%)

Query: 56  SPSLLQLKDLKYLDLSMNNFKGFKVPEF-----------------IGSLKELRYLNLSGS 98
              +     L  LD S N      V +                  +    +L +L+ S +
Sbjct: 163 KLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSN 222

Query: 99  FFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWL 158
             +  I   +  LT L Y D +      N +    +S L  L  L+    DL +      
Sbjct: 223 KLT-EID--VTPLTQLTYFDCSV-----NPLTELDVSTLSKLTTLHCIQTDLLEI----- 269

Query: 159 ESISMLRSLVELRLPNCN 176
             ++    L+  +   C 
Sbjct: 270 -DLTHNTQLIYFQAEGCR 286

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 38.1 bits (89), Expect = 8e-04
 Identities = 23/116 (19%), Positives = 34/116 (29%), Gaps = 17/116 (14%)

Query: 61  QLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLN 120
            L  L  L     +         +    +L Y    G      +   + + T L  LD  
Sbjct: 252 TLSKLTTLHCIQTDLLEID----LTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQ 305

Query: 121 NFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176
                   I    LS  P L YL L   +L++        +S    L  L   N +
Sbjct: 306 A-----AGITELDLSQNPKLVYLYLNNTELTE------LDVSHNTKLKSLSCVNAH 350

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 1e-05
 Identities = 12/79 (15%), Positives = 20/79 (25%), Gaps = 9/79 (11%)

Query: 78  FKVPEFIGSLKELRYLNLSGSFFSGTIP-QSLGNLTNLLYLDLNNFLDQSNQIGL---GW 133
                 +   + L  L +        +  + L  L  L  L +       + +       
Sbjct: 21  LDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK-----SGLRFVAPDA 75

Query: 134 LSGLPSLKYLNLGGADLSK 152
               P L  LNL    L  
Sbjct: 76  FHFTPRLSRLNLSFNALES 94

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 39.0 bits (90), Expect = 4e-04
 Identities = 22/92 (23%), Positives = 32/92 (34%), Gaps = 5/92 (5%)

Query: 57  PSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLY 116
             L   ++L  L +             +  L ELR L +  S      P +      L  
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84

Query: 117 LDL-NNFLDQSNQIGLGWLSGLPSLKYLNLGG 147
           L+L  N L     +    + GL SL+ L L G
Sbjct: 85  LNLSFNAL---ESLSWKTVQGL-SLQELVLSG 112

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 16/122 (13%)

Query: 54  PISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTN 113
              P       L YL +S        +P+     + L  L+L  +       + L   + 
Sbjct: 163 GFEPGAFDGLKLNYLRISEAKLT--GIPK--DLPETLNELHLDHNKIQAIELEDLLRYSK 218

Query: 114 LLYLDLNNFLDQSNQI---GLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVEL 170
           L  L L +     NQI     G LS LP+L+ L+L    LS+  A     +  L+ L  +
Sbjct: 219 LYRLGLGH-----NQIRMIENGSLSFLPTLRELHLDNNKLSRVPA----GLPDLKLLQVV 269

Query: 171 RL 172
            L
Sbjct: 270 YL 271

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 20/104 (19%)

Query: 63  KDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDL-NN 121
            D   LDL  N+    +  +F G L+ L  L L  +  S    ++   L  L  L +  N
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKG-LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112

Query: 122 FLD---------------QSNQIGL---GWLSGLPSLKYLNLGG 147
            L                  N+I     G  SGL ++  + +GG
Sbjct: 113 HLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGG 156

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 20/116 (17%), Positives = 37/116 (31%), Gaps = 11/116 (9%)

Query: 62  LKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNN 121
            + L  L L  N  +  ++ + +    +L  L L  +        SL  L  L  L L+N
Sbjct: 192 PETLNELHLDHNKIQAIELEDLLR-YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN 250

Query: 122 FLDQSNQIGL--GWLSGLPSLKYLNLGG---ADLSKDAAYWLESISMLRSLVELRL 172
                N++      L  L  L+ + L       +  +    +           + L
Sbjct: 251 -----NKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISL 301

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 10/96 (10%)

Query: 58  SLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQS-------LGN 110
           SL  L  L+ L L  N     +VP  +  LK L+ + L  +  +  +  +          
Sbjct: 236 SLSFLPTLRELHLDNNKLS--RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVK 292

Query: 111 LTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLG 146
                 + L N      ++       +     +  G
Sbjct: 293 RAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFG 328

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 16/99 (16%)

Query: 58  SLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYL 117
            LL+   L  L L  N  +  +       L  LR L+L  +  S  +P  L +L  L  +
Sbjct: 212 DLLRYSKLYRLGLGHNQIRMIENGSLSF-LPTLRELHLDNNKLS-RVPAGLPDLKLLQVV 269

Query: 118 DLNNFLDQSNQI---------GLGWLSGLPSLKYLNLGG 147
            L+      N I          +G+         ++L  
Sbjct: 270 YLHT-----NNITKVGVNDFCPVGFGVKRAYYNGISLFN 303

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 23/114 (20%), Positives = 39/114 (34%), Gaps = 6/114 (5%)

Query: 55  ISPSLLQ-LKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTN 113
           +   +   L+++  +++  N  +            +L YL +S +  +G        L  
Sbjct: 138 VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNE 197

Query: 114 LLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSL 167
            L+LD N        I L  L     L  L LG   +       L  +  LR L
Sbjct: 198 -LHLDHNKI----QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLREL 246

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 11/111 (9%)

Query: 62  LKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNN 121
           L+ L+ L +S N+    ++P        L  L +  +            L N+  +++  
Sbjct: 101 LRKLQKLYISKNHLV--EIPP--NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGG 156

Query: 122 FLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRL 172
              +++    G   GL  L YL +  A L+           +  +L EL L
Sbjct: 157 NPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPK------DLPETLNELHL 200

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 42.3 bits (99), Expect = 3e-05
 Identities = 19/117 (16%), Positives = 37/117 (31%), Gaps = 12/117 (10%)

Query: 61  QLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLN 120
               L+ L +  N      +PE   SL+ L   ++S +    ++P       +    ++ 
Sbjct: 158 LPTSLEVLSVRNNQLT--FLPELPESLEAL---DVSTNLLE-SLPAVPVRNHHSEETEIF 211

Query: 121 NFLDQSNQIGL--GWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNC 175
               + N+I      +  L     + L    LS      L   S   +  +   P  
Sbjct: 212 FRCRE-NRITHIPENILSLDPTCTIILEDNPLSSRIRESL---SQQTAQPDYHGPRI 264

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 41.9 bits (98), Expect = 5e-05
 Identities = 23/116 (19%), Positives = 46/116 (39%), Gaps = 28/116 (24%)

Query: 57  PSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLY 116
                +     L L+  N     +P+ +    ++  L ++ +    ++P+   +L    Y
Sbjct: 53  LKECLINQFSELQLNRLNLS--SLPDNLP--PQITVLEITQNALI-SLPELPASLE---Y 104

Query: 117 LDLNNFLDQSNQIGLGWLSGLP----SLKYLNLGGADLSKDAAYWL-ESISMLRSL 167
           LD  +     N+     LS LP    SLK+L++    L+      L E  ++L  +
Sbjct: 105 LDACD-----NR-----LSTLPELPASLKHLDVDNNQLT-----MLPELPALLEYI 145

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 20/112 (17%), Positives = 36/112 (32%), Gaps = 19/112 (16%)

Query: 61  QLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLN 120
               LK+LD+  N      +PE    L+    +N   +  +  +P+   +L     L + 
Sbjct: 118 LPASLKHLDVDNNQLT--MLPELPALLEY---INADNNQLT-MLPELPTSLE---VLSVR 168

Query: 121 NFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRL 172
           N     NQ+         SL+ L++    L                  E  +
Sbjct: 169 N-----NQLT-FLPELPESLEALDVSTNLLES----LPAVPVRNHHSEETEI 210

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 12/90 (13%)

Query: 61  QLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLN 120
               L  L+L        K+    G+L  L  L+LS +    ++P     L  L  LD++
Sbjct: 53  PYTRLTQLNLDRAELT--KLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVS 108

Query: 121 NFLDQSNQI---GLGWLSGLPSLKYLNLGG 147
                 N++    LG L GL  L+ L L G
Sbjct: 109 F-----NRLTSLPLGALRGLGELQELYLKG 133

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 40.7 bits (94), Expect = 1e-04
 Identities = 24/166 (14%), Positives = 50/166 (30%), Gaps = 17/166 (10%)

Query: 22  LLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVP 81
           ++      +     F    D  E +        +SP L  +  L  L +   N       
Sbjct: 131 IVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKK 190

Query: 82  EFIGSLKELRYLNLSGSFFSGTIPQSLG--NLTNLLYLDLNNFLDQSNQIGLGWLSGL-- 137
                   L+ L +       ++ + +   +L NL  L L  ++   +    G ++    
Sbjct: 191 ----PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVL--YVGVEDYGFDGDMNVFRP 244

Query: 138 -------PSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176
                  P+LK+L +  A+             +L  L  + +    
Sbjct: 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 27/130 (20%), Positives = 44/130 (33%), Gaps = 12/130 (9%)

Query: 55  ISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKE----LRYLNLSGSFFS----GTIPQ 106
           ++  L    D K L +S N+     V      LK+    L  L L     +      +  
Sbjct: 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 221

Query: 107 SLGNLTNLLYLDL--NNFLDQS-NQIGLGWLSGLPSLKYLNLGGADLSKDAAYWL-ESIS 162
            + +  +L  L L  N   D    ++  G L     L+ L +    ++      L   + 
Sbjct: 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR 281

Query: 163 MLRSLVELRL 172
              SL EL L
Sbjct: 282 AKESLKELSL 291

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 19/91 (20%), Positives = 29/91 (31%), Gaps = 17/91 (18%)

Query: 62  LKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNN 121
              +  L +  NN     +P     L   R L +SG+  + ++P     L  L       
Sbjct: 60  PAHITTLVIPDNNLT--SLPALPPEL---RTLEVSGNQLT-SLPVLPPGLLELSIFSNPL 113

Query: 122 FLDQSNQIGLGWLSGLP-SLKYLNLGGADLS 151
                       L  LP  L  L + G  L+
Sbjct: 114 -----TH-----LPALPSGLCKLWIFGNQLT 134

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 5/108 (4%)

Query: 62  LKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQS--LGNLTNLLYLDL 119
           L  L++LDLS N         F   L  L +LNL G+ +  T+ ++    +LT L  L +
Sbjct: 99  LGSLEHLDLSYNYLSNLSSSWFKP-LSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRV 156

Query: 120 NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSL 167
            N  D   +I     +GL  L+ L +  +DL       L+SI  +  L
Sbjct: 157 GNM-DTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL 203

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 38.2 bits (89), Expect = 7e-04
 Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 11/93 (11%)

Query: 60  LQLKDLKYLDLSMNNFKGFKVPEF--IGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYL 117
           ++  +L+  DL   +F      E   +      R + ++       + + L  ++ LL L
Sbjct: 224 VECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLEL 282

Query: 118 DLNNFLDQSNQ---IGLGWLSGLPSLKYLNLGG 147
           + +      NQ   +  G    L SL+ + L  
Sbjct: 283 EFSR-----NQLKSVPDGIFDRLTSLQKIWLHT 310

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 38.3 bits (89), Expect = 7e-04
 Identities = 19/117 (16%), Positives = 37/117 (31%), Gaps = 2/117 (1%)

Query: 61  QLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLG-NLTNLLYLDL 119
              D   +      +    +     S   L  + L     +    + +  +  N   L L
Sbjct: 78  HFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVL 137

Query: 120 NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISM-LRSLVELRLPNC 175
           ++    S        +   +LK L+L  +D+   + +WL        SLV L +   
Sbjct: 138 SSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCL 194

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 37.1 bits (86), Expect = 9e-04
 Identities = 19/113 (16%), Positives = 44/113 (38%), Gaps = 9/113 (7%)

Query: 65  LKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSG-SFFSGTIPQSLGNLTN----LLYLDL 119
           ++ +D + +        + +  L+ +  + L    +      + L  L N    +L +++
Sbjct: 63  IQAIDATDSCIM-SIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEI 121

Query: 120 NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRL 172
            +  + +++ G+  L    +LKYL L      K+        +   SL  L L
Sbjct: 122 ISCGNVTDK-GIIALHHFRNLKYLFLSDLPGVKEKE--KIVQAFKTSLPSLEL 171

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	176
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.9
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.9
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.89
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.89
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.88
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.87
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.87
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.87
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.86
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.86
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.86
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.86
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.86
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.86
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.86
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.86
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.85
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.85
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.85
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.85
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.85
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.85
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.85
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.85
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.85
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.85
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.85
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.85
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.85
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.84
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.84
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.84
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.84
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.84
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.84
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.84
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.84
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.83
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.83
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.83
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.83
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.83
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.83
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.83
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.83
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.83
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.83
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.82
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.82
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.82
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.82
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.82
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.82
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.82
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.82
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.82
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.81
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.81
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.81
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.81
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.81
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.81
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.8
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.8
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.8
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.8
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.8
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.8
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.79
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.79
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.79
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.79
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.79
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.78
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.78
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.78
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.78
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.78
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.78
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.78
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.77
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.77
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.77
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.77
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.76
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.76
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.76
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.76
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.75
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.75
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.75
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.74
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.74
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.74
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.73
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.72
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.72
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.71
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.71
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.7
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.7
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.7
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.69
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.68
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.68
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.66
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.66
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.66
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.65
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.62
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.62
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.61
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.6
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.6
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.59
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.59
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.59
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.58
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.58
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.58
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.57
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.56
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.56
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.54
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.45
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.44
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.44
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.41
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.4
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.4
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.31
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.25
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.22
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.1
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.09
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.96
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.96
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.93
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.93
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.82
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.78
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.74
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.7
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.25
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.17
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.12
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.11
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.1
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.04
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.03
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.03
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.24
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.84

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.92  E-value=1.6e-23  Score=150.12  Aligned_cols=157  Identities=20%  Similarity=0.107  Sum_probs=137.8

Q ss_pred             ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEE
Q 038633           14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYL   93 (176)
Q Consensus        14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L   93 (176)
                      .+.++.|++++|.+.+..+..+..+.+|++|++++|.+++..+..|..+++|++|++++|.+... .+..+..+++|++|
T Consensus        34 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L  112 (251)
T 3m19_A           34 PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL-PLGVFDHLTQLDKL  112 (251)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEE
T ss_pred             CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccccc-ChhHhcccCCCCEE
Confidence            46799999999999988887888999999999999999988888899999999999999999965 66778899999999


Q ss_pred             EeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCc
Q 038633           94 NLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLP  173 (176)
Q Consensus        94 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~  173 (176)
                      ++++|++....+..+..+++|+.|++++|.++  ......+..+++|++|++++|.+.+.++.   .+..+++|+.|+++
T Consensus       113 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~  187 (251)
T 3m19_A          113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ--SIPAGAFDKLTNLQTLSLSTNQLQSVPHG---AFDRLGKLQTITLF  187 (251)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECC
T ss_pred             EcCCCcCCCcChhHhccCCcccEEECcCCcCC--ccCHHHcCcCcCCCEEECCCCcCCccCHH---HHhCCCCCCEEEee
Confidence            99999998555556788999999999999984  33334588999999999999999988775   77889999999999


Q ss_pred             CCC
Q 038633          174 NCN  176 (176)
Q Consensus       174 ~n~  176 (176)
                      +|.
T Consensus       188 ~N~  190 (251)
T 3m19_A          188 GNQ  190 (251)
T ss_dssp             SCC
T ss_pred             CCc
Confidence            984

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=1.1e-22  Score=147.19  Aligned_cols=159  Identities=23%  Similarity=0.143  Sum_probs=92.6

Q ss_pred             cccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCc
Q 038633           11 LHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKEL   90 (176)
Q Consensus        11 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L   90 (176)
                      +..+++|+.|++++|.+....+..+..+.+|++|++++|.+++..+..+..+++|++|++++|.+... .+..+..+++|
T Consensus        57 ~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L  135 (270)
T 2o6q_A           57 FHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSL-PPRVFDSLTKL  135 (270)
T ss_dssp             SSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCC-CTTTTTTCTTC
T ss_pred             hcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCee-CHHHhCcCcCC
Confidence            44455555555555555544444445555666666666665544444555566666666666666543 44445566666


Q ss_pred             cEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEe
Q 038633           91 RYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVEL  170 (176)
Q Consensus        91 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L  170 (176)
                      ++|++++|++....+..++.+++|+.|++++|.++.  .....+..+++|++|++++|.+.+.++.   .+..+++|+.|
T Consensus       136 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L  210 (270)
T 2o6q_A          136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR--VPEGAFDKLTELKTLKLDNNQLKRVPEG---AFDSLEKLKML  210 (270)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC--CCTTTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEE
T ss_pred             CEEECCCCcCCccCHhHccCCcccceeEecCCcCcE--eChhHhccCCCcCEEECCCCcCCcCCHH---HhccccCCCEE
Confidence            666666666653333345566666666666666632  2223356667777777777777655553   45666777777


Q ss_pred             eCcCC
Q 038633          171 RLPNC  175 (176)
Q Consensus       171 ~l~~n  175 (176)
                      ++++|
T Consensus       211 ~l~~N  215 (270)
T 2o6q_A          211 QLQEN  215 (270)
T ss_dssp             ECCSS
T ss_pred             EecCC
Confidence            77766

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.90  E-value=1.2e-22  Score=147.93  Aligned_cols=159  Identities=21%  Similarity=0.073  Sum_probs=83.9

Q ss_pred             ccccccceeeccCcc-ccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCc
Q 038633           12 HLLSRIFALSLLRCC-SVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKEL   90 (176)
Q Consensus        12 ~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L   90 (176)
                      ..+++|+.|++++|. +....+..+..+.+|++|++++|.+++..+..+..+++|++|++++|.+... .+..+..+++|
T Consensus        77 ~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L  155 (285)
T 1ozn_A           77 TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL-PDDTFRDLGNL  155 (285)
T ss_dssp             TTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTC
T ss_pred             CCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccccc-CHhHhccCCCc
Confidence            334444455554443 3333333444445555555555555444444455555555555555555532 33334455555


Q ss_pred             cEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEe
Q 038633           91 RYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVEL  170 (176)
Q Consensus        91 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L  170 (176)
                      ++|++++|++.+..+..+..+++|+.|++++|.+.  ...+..+..+++|++|++++|.+.+.++.   .+..+++|+.|
T Consensus       156 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L  230 (285)
T 1ozn_A          156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA--HVHPHAFRDLGRLMTLYLFANNLSALPTE---ALAPLRALQYL  230 (285)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSSCCSCCCHH---HHTTCTTCCEE
T ss_pred             cEEECCCCcccccCHHHhcCccccCEEECCCCccc--ccCHhHccCcccccEeeCCCCcCCcCCHH---HcccCcccCEE
Confidence            55555555554222223555555555555555552  22233456666777777777777665554   56667777777


Q ss_pred             eCcCCC
Q 038633          171 RLPNCN  176 (176)
Q Consensus       171 ~l~~n~  176 (176)
                      ++++|.
T Consensus       231 ~l~~N~  236 (285)
T 1ozn_A          231 RLNDNP  236 (285)
T ss_dssp             ECCSSC
T ss_pred             eccCCC
Confidence            777763

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.90  E-value=4.4e-24  Score=157.65  Aligned_cols=148  Identities=20%  Similarity=0.281  Sum_probs=84.0

Q ss_pred             ceeecccccccccccceeeccCccccC--CCCcCcccCCcceEeecCC-CCccccchhhhcCCCCCcEEEccCccccCCc
Q 038633            3 YFVFALSDLHLLSRIFALSLLRCCSVG--SALAQPFRDSFDTYEDDAG-HELGGPISPSLLQLKDLKYLDLSMNNFKGFK   79 (176)
Q Consensus         3 ~~~~~~~~~~~~~~l~~l~l~~~~~~~--~~~~~~~~~~~l~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~   79 (176)
                      |.++.+.......+++.|+++++.+.+  ..+..+..+.+|++|++++ |.+.+.+|..+..+++|++|++++|.+.+. 
T Consensus        38 w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-  116 (313)
T 1ogq_A           38 WLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-  116 (313)
T ss_dssp             STTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-
T ss_pred             CcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-
Confidence            666655433223456666666666655  4555556666666666663 666556666666666666666666666554 


Q ss_pred             chhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCC-CccEEeccCCCCCCc
Q 038633           80 VPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLP-SLKYLNLGGADLSKD  153 (176)
Q Consensus        80 ~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~  153 (176)
                      .|..+..+++|++|++++|++.+..|..++.+++|++|++++|++.  ...+..+..++ +|++|++++|.+.+.
T Consensus       117 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~l~~l~~~L~~L~L~~N~l~~~  189 (313)
T 1ogq_A          117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS--GAIPDSYGSFSKLFTSMTISRNRLTGK  189 (313)
T ss_dssp             CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCE--EECCGGGGCCCTTCCEEECCSSEEEEE
T ss_pred             CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCccc--CcCCHHHhhhhhcCcEEECcCCeeecc
Confidence            5555666666666666666665555555666666666666666552  12222244444 555555555554433

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.90  E-value=1e-22  Score=148.24  Aligned_cols=159  Identities=19%  Similarity=0.110  Sum_probs=86.5

Q ss_pred             cccccccceeeccCccccCCCCcCcccCCcceEeecCCCC-ccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCC
Q 038633           11 LHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHE-LGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKE   89 (176)
Q Consensus        11 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~   89 (176)
                      +..+++++.|++++|.+.+..+..+..+.+|++|++++|. ++...+..+..+++|++|++++|.+... .|..+..+++
T Consensus        52 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~  130 (285)
T 1ozn_A           52 FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL-GPGLFRGLAA  130 (285)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTT
T ss_pred             cccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEE-CHhHhhCCcC
Confidence            3444555555555555544444444555555555555554 4444445555555555555555555543 4445555555


Q ss_pred             ccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcE
Q 038633           90 LRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVE  169 (176)
Q Consensus        90 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~  169 (176)
                      |++|++++|++....+..++.+++|+.|++++|.++  ......+..+++|++|++++|.+.+..+.   .++.+++|+.
T Consensus       131 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~  205 (285)
T 1ozn_A          131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS--SVPERAFRGLHSLDRLLLHQNRVAHVHPH---AFRDLGRLMT  205 (285)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSSCCCEECTT---TTTTCTTCCE
T ss_pred             CCEEECCCCcccccCHhHhccCCCccEEECCCCccc--ccCHHHhcCccccCEEECCCCcccccCHh---HccCcccccE
Confidence            666666665555333334555566666666666552  22222355566666666666666655444   5556666777


Q ss_pred             eeCcCC
Q 038633          170 LRLPNC  175 (176)
Q Consensus       170 L~l~~n  175 (176)
                      |++++|
T Consensus       206 L~l~~n  211 (285)
T 1ozn_A          206 LYLFAN  211 (285)
T ss_dssp             EECCSS
T ss_pred             eeCCCC
Confidence            776665

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=1.4e-22  Score=146.78  Aligned_cols=161  Identities=24%  Similarity=0.166  Sum_probs=136.5

Q ss_pred             ccccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCc
Q 038633            8 LSDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSL   87 (176)
Q Consensus         8 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l   87 (176)
                      ++.+..+++++.|++++|.+.+.  .....+.+|++|++++|.+++..+..+..+++|++|++++|.+... .+..+..+
T Consensus        56 ~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l  132 (272)
T 3rfs_A           56 VQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL-PDGVFDKL  132 (272)
T ss_dssp             CTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTC
T ss_pred             ccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCcc-CHHHhccC
Confidence            45577789999999999988763  3567888999999999999887777889999999999999999965 66668889


Q ss_pred             CCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccC
Q 038633           88 KELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSL  167 (176)
Q Consensus        88 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L  167 (176)
                      ++|++|++++|++.+..+..++.+++|+.|++++|+++  ......+..+++|++|++++|.+.+.++.   .++.+++|
T Consensus       133 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L  207 (272)
T 3rfs_A          133 TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ--SLPEGVFDKLTQLKDLRLYQNQLKSVPDG---VFDRLTSL  207 (272)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTC
T ss_pred             CCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC--ccCHHHhcCCccCCEEECCCCcCCccCHH---HHhCCcCC
Confidence            99999999999998555566789999999999999984  33344578899999999999999988775   67889999


Q ss_pred             cEeeCcCCC
Q 038633          168 VELRLPNCN  176 (176)
Q Consensus       168 ~~L~l~~n~  176 (176)
                      +.|++++|.
T Consensus       208 ~~L~l~~N~  216 (272)
T 3rfs_A          208 QYIWLHDNP  216 (272)
T ss_dssp             CEEECCSSC
T ss_pred             CEEEccCCC
Confidence            999999884

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=3.2e-22  Score=144.73  Aligned_cols=157  Identities=22%  Similarity=0.147  Sum_probs=134.8

Q ss_pred             ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEE
Q 038633           14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYL   93 (176)
Q Consensus        14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L   93 (176)
                      .++++.|++++|.+....+..+..+.+|++|++++|.++...+..|..+++|++|++++|.+... .+..+..+++|++|
T Consensus        36 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L  114 (270)
T 2o6q_A           36 PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL-PIGVFDQLVNLAEL  114 (270)
T ss_dssp             CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCC-CTTTTTTCSSCCEE
T ss_pred             CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcC-CHhHcccccCCCEE
Confidence            35789999999999887777788899999999999999876667778999999999999999965 55677889999999


Q ss_pred             EeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCc
Q 038633           94 NLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLP  173 (176)
Q Consensus        94 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~  173 (176)
                      ++++|++....+..++.+++|++|++++|.++.  .....+..+++|++|++++|.+.+.++.   .+..+++|++|+++
T Consensus       115 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~  189 (270)
T 2o6q_A          115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS--LPKGVFDKLTSLKELRLYNNQLKRVPEG---AFDKLTELKTLKLD  189 (270)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECC
T ss_pred             ECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc--cCHhHccCCcccceeEecCCcCcEeChh---HhccCCCcCEEECC
Confidence            999999986666778899999999999999843  3334578899999999999999987765   67889999999999


Q ss_pred             CCC
Q 038633          174 NCN  176 (176)
Q Consensus       174 ~n~  176 (176)
                      +|+
T Consensus       190 ~N~  192 (270)
T 2o6q_A          190 NNQ  192 (270)
T ss_dssp             SSC
T ss_pred             CCc
Confidence            884

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.89  E-value=9.3e-23  Score=166.39  Aligned_cols=161  Identities=24%  Similarity=0.270  Sum_probs=120.0

Q ss_pred             ccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhh-----
Q 038633           10 DLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFI-----   84 (176)
Q Consensus        10 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~-----   84 (176)
                      .+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+.+. +|..+     
T Consensus       485 ~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~-ip~~~~~~~~  563 (768)
T 3rgz_A          485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT-IPAAMFKQSG  563 (768)
T ss_dssp             GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESB-CCGGGGTTTT
T ss_pred             HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCc-CChHHhcccc
Confidence            455666777777777777766666666777777777777777777777777777777777777777654 55432     


Q ss_pred             -----------------------------------------------------------------cCcCCccEEEeeccc
Q 038633           85 -----------------------------------------------------------------GSLKELRYLNLSGSF   99 (176)
Q Consensus        85 -----------------------------------------------------------------~~l~~L~~L~l~~~~   99 (176)
                                                                                       ..+++|+.|++++|+
T Consensus       564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~  643 (768)
T 3rgz_A          564 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM  643 (768)
T ss_dssp             CBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSC
T ss_pred             hhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCc
Confidence                                                                             224567788888888


Q ss_pred             CCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633          100 FSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN  176 (176)
Q Consensus       100 ~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~  176 (176)
                      +.+.+|..++.+++|+.|++++|.+  ....+..+..+++|++||+++|++.+.+|.   .++.++.|+.|++++|+
T Consensus       644 l~g~ip~~l~~l~~L~~L~Ls~N~l--~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~---~l~~l~~L~~L~ls~N~  715 (768)
T 3rgz_A          644 LSGYIPKEIGSMPYLFILNLGHNDI--SGSIPDEVGDLRGLNILDLSSNKLDGRIPQ---AMSALTMLTEIDLSNNN  715 (768)
T ss_dssp             CBSCCCGGGGGCTTCCEEECCSSCC--CSCCCGGGGGCTTCCEEECCSSCCEECCCG---GGGGCCCCSEEECCSSE
T ss_pred             ccccCCHHHhccccCCEEeCcCCcc--CCCCChHHhCCCCCCEEECCCCcccCcCCh---HHhCCCCCCEEECcCCc
Confidence            8778888888888888888888887  444455678888888888888888888776   77888888888888873

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.89  E-value=1e-22  Score=150.26  Aligned_cols=158  Identities=17%  Similarity=0.170  Sum_probs=93.0

Q ss_pred             cccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCC-CCcEEEccCccccCCcchhhhcCcCC
Q 038633           11 LHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLK-DLKYLDLSMNNFKGFKVPEFIGSLKE   89 (176)
Q Consensus        11 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~p~~~~~l~~   89 (176)
                      +..+++|+.|++++|.+.+..+..+..+.+|++|++++|.+++.+|..+..++ .|++|++++|.+.+. .|..+..+. 
T Consensus       121 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~-~~~~~~~l~-  198 (313)
T 1ogq_A          121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK-IPPTFANLN-  198 (313)
T ss_dssp             GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE-CCGGGGGCC-
T ss_pred             HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeecc-CChHHhCCc-
Confidence            34445555555555555544444444555555555555555545555555554 555555555555543 444554444 


Q ss_pred             ccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcE
Q 038633           90 LRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVE  169 (176)
Q Consensus        90 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~  169 (176)
                      |++|++++|++.+..|..++.+++|+.|++++|.+....   ..+..+++|++|++++|.+.+..|.   .++.+++|++
T Consensus       199 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~  272 (313)
T 1ogq_A          199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL---GKVGLSKNLNGLDLRNNRIYGTLPQ---GLTQLKFLHS  272 (313)
T ss_dssp             CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG---GGCCCCTTCCEEECCSSCCEECCCG---GGGGCTTCCE
T ss_pred             ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeec---CcccccCCCCEEECcCCcccCcCCh---HHhcCcCCCE
Confidence            555555555555455556666677777777777663211   1256677888888888888766665   6777888888


Q ss_pred             eeCcCCC
Q 038633          170 LRLPNCN  176 (176)
Q Consensus       170 L~l~~n~  176 (176)
                      |++++|+
T Consensus       273 L~Ls~N~  279 (313)
T 1ogq_A          273 LNVSFNN  279 (313)
T ss_dssp             EECCSSE
T ss_pred             EECcCCc
Confidence            8888773

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.88  E-value=2.1e-22  Score=149.55  Aligned_cols=157  Identities=20%  Similarity=0.144  Sum_probs=81.2

Q ss_pred             cccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCC------------
Q 038633           11 LHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGF------------   78 (176)
Q Consensus        11 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~------------   78 (176)
                      +..+++|+.|++++|.+. ..+..+..+.+|++|++++|.++ .+|..+..+++|++|++++|.+.+.            
T Consensus       100 l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~  177 (328)
T 4fcg_A          100 AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASG  177 (328)
T ss_dssp             GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred             hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchh
Confidence            334555666666665555 34444555555555666555554 4455555555555555555444332            


Q ss_pred             -------------------cchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCC
Q 038633           79 -------------------KVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPS  139 (176)
Q Consensus        79 -------------------~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~  139 (176)
                                         .+|..+..+++|++|++++|++. .+|..++.+++|+.|++++|.+  ....+..+..+++
T Consensus       178 ~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~--~~~~p~~~~~l~~  254 (328)
T 4fcg_A          178 EHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTA--LRNYPPIFGGRAP  254 (328)
T ss_dssp             CEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTT--CCBCCCCTTCCCC
T ss_pred             hhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcc--hhhhHHHhcCCCC
Confidence                               23444444445555555555544 3344444555555555555444  2222333555556


Q ss_pred             ccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCC
Q 038633          140 LKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNC  175 (176)
Q Consensus       140 L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n  175 (176)
                      |++|++++|.+.+..|.   .++.+++|++|++++|
T Consensus       255 L~~L~L~~n~~~~~~p~---~~~~l~~L~~L~L~~n  287 (328)
T 4fcg_A          255 LKRLILKDCSNLLTLPL---DIHRLTQLEKLDLRGC  287 (328)
T ss_dssp             CCEEECTTCTTCCBCCT---TGGGCTTCCEEECTTC
T ss_pred             CCEEECCCCCchhhcch---hhhcCCCCCEEeCCCC
Confidence            66666666555555554   4555666666666655

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.88  E-value=2.2e-21  Score=136.53  Aligned_cols=150  Identities=19%  Similarity=0.104  Sum_probs=100.6

Q ss_pred             ceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeec
Q 038633           18 FALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSG   97 (176)
Q Consensus        18 ~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~   97 (176)
                      +.++.+++.+.......   ...++.|++++|.+++..+..|..+++|++|++++|.+... .|..+..+++|++|++++
T Consensus        14 ~~v~c~~~~l~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCSSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE-CTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCCCCcCcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc-CHHHhhCCcCCCEEECCC
Confidence            45666665554432211   25677777777777766666777777777777777777755 566777777777777777


Q ss_pred             ccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633           98 SFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN  176 (176)
Q Consensus        98 ~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~  176 (176)
                      |++....+..+..+++|+.|++++|.++  ......+..+++|++|++++|.+.+.++.   .+..+++|+.|++++|.
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNANKIN--CLRVDAFQDLHNLNLLSLYDNKLQTIAKG---TFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSSC
T ss_pred             CcCCccCHhHccCCCCCCEEECCCCCCC--EeCHHHcCCCCCCCEEECCCCcCCEECHH---HHhCCCCCCEEEeCCCC
Confidence            7776333344567777777777777773  23334467777777777777777766654   56667777777777763

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=1.5e-21  Score=142.68  Aligned_cols=131  Identities=23%  Similarity=0.122  Sum_probs=60.1

Q ss_pred             cCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCE
Q 038633           37 RDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLY  116 (176)
Q Consensus        37 ~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~  116 (176)
                      .+.+|++|++++|.++ .+|..+..+++|++|++++|.+... .|..+..+++|++|++++|++....+..+..+++|+.
T Consensus        75 ~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  152 (290)
T 1p9a_G           75 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSL-PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK  152 (290)
T ss_dssp             CCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCC-CSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCccc-CHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCE
Confidence            3344444444444443 3344444455555555555555432 3334444555555555555554332333444555555


Q ss_pred             EEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCC
Q 038633          117 LDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNC  175 (176)
Q Consensus       117 L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n  175 (176)
                      |++++|+++.  .....+..+++|++|++++|.+...+.    .+...+.|+.+++++|
T Consensus       153 L~L~~N~l~~--l~~~~~~~l~~L~~L~L~~N~l~~ip~----~~~~~~~L~~l~L~~N  205 (290)
T 1p9a_G          153 LSLANNNLTE--LPAGLLNGLENLDTLLLQENSLYTIPK----GFFGSHLLPFAFLHGN  205 (290)
T ss_dssp             EECTTSCCSC--CCTTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCCCSEEECCSC
T ss_pred             EECCCCcCCc--cCHHHhcCcCCCCEEECCCCcCCccCh----hhcccccCCeEEeCCC
Confidence            5555555422  222224445555555555555543322    3333445555555554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.87  E-value=6.9e-22  Score=146.78  Aligned_cols=158  Identities=18%  Similarity=0.119  Sum_probs=135.0

Q ss_pred             ccccccccceeeccCccccCCCCcCccc---------CCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcc
Q 038633           10 DLHLLSRIFALSLLRCCSVGSALAQPFR---------DSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKV   80 (176)
Q Consensus        10 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~---------~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~   80 (176)
                      .+..+++|+.|++++|.+.+..+.....         +.+|++|++++|.++ .+|..+..+++|++|++++|.+.  .+
T Consensus       145 ~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~--~l  221 (328)
T 4fcg_A          145 SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS--AL  221 (328)
T ss_dssp             GGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC--CC
T ss_pred             HHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC--cC
Confidence            4566777888888887777666655443         788888999988887 78888999999999999999999  47


Q ss_pred             hhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHH
Q 038633           81 PEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLES  160 (176)
Q Consensus        81 p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  160 (176)
                      |..+..+++|++|++++|.+.+..|..++.+++|+.|++++|.+  ....+..+..+++|++|++++|.+.+..|.   .
T Consensus       222 ~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~--~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~---~  296 (328)
T 4fcg_A          222 GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN--LLTLPLDIHRLTQLEKLDLRGCVNLSRLPS---L  296 (328)
T ss_dssp             CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTT--CCBCCTTGGGCTTCCEEECTTCTTCCCCCG---G
T ss_pred             chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCc--hhhcchhhhcCCCCCEEeCCCCCchhhccH---H
Confidence            77899999999999999999889999999999999999999987  334445588999999999999999998887   8


Q ss_pred             hhccccCcEeeCcCC
Q 038633          161 ISMLRSLVELRLPNC  175 (176)
Q Consensus       161 l~~~~~L~~L~l~~n  175 (176)
                      ++.+++|+.+++..+
T Consensus       297 l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          297 IAQLPANCIILVPPH  311 (328)
T ss_dssp             GGGSCTTCEEECCGG
T ss_pred             HhhccCceEEeCCHH
Confidence            899999999988754

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.87  E-value=8.8e-22  Score=144.63  Aligned_cols=161  Identities=17%  Similarity=0.147  Sum_probs=128.3

Q ss_pred             cccccccceeeccCccccCCCC-cCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCC
Q 038633           11 LHLLSRIFALSLLRCCSVGSAL-AQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKE   89 (176)
Q Consensus        11 ~~~~~~l~~l~l~~~~~~~~~~-~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~   89 (176)
                      +..+++|+.|++++|.+.+... ..+..+.+|++|++++|.+++..+..+..+++|++|++++|.+.....|..+..+++
T Consensus        97 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  176 (306)
T 2z66_A           97 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN  176 (306)
T ss_dssp             EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred             cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcC
Confidence            5567788888888888776554 456777888899999998888888888888999999999998875216777888889


Q ss_pred             ccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccc-cCc
Q 038633           90 LRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLR-SLV  168 (176)
Q Consensus        90 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~-~L~  168 (176)
                      |++|++++|++.+..|..+..+++|+.|++++|.+..  .....+..+++|++|++++|.+.+.++.   .+..++ +|+
T Consensus       177 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~~~~~L~  251 (306)
T 2z66_A          177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS--LDTFPYKCLNSLQVLDYSLNHIMTSKKQ---ELQHFPSSLA  251 (306)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB--CCSGGGTTCTTCCEEECTTSCCCBCSSS---SCCCCCTTCC
T ss_pred             CCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc--cChhhccCcccCCEeECCCCCCcccCHH---HHHhhhccCC
Confidence            9999999999885557778888999999999998843  3333477888999999999999887765   666674 899


Q ss_pred             EeeCcCCC
Q 038633          169 ELRLPNCN  176 (176)
Q Consensus       169 ~L~l~~n~  176 (176)
                      .|++++|.
T Consensus       252 ~L~L~~N~  259 (306)
T 2z66_A          252 FLNLTQND  259 (306)
T ss_dssp             EEECTTCC
T ss_pred             EEEccCCC
Confidence            99998884

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=4e-21  Score=137.56  Aligned_cols=153  Identities=20%  Similarity=0.151  Sum_probs=130.8

Q ss_pred             cccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEE
Q 038633           15 SRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLN   94 (176)
Q Consensus        15 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~   94 (176)
                      ...+.++++++.+.......+   ..++.|++++|.+++..+..|..+++|++|++++|.+... .+..+..+++|++|+
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~   89 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLG   89 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEE
T ss_pred             CCCeEEecCCCCccccCCCCC---CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEE
Confidence            467789999887765443222   5789999999999988888999999999999999999976 777789999999999


Q ss_pred             eecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcC
Q 038633           95 LSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPN  174 (176)
Q Consensus        95 l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~  174 (176)
                      +++|++.+..+..++.+++|+.|++++|.++  ......+..+++|++|++++|.+.+.++.   .++.+++|++|++++
T Consensus        90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~L~~  164 (251)
T 3m19_A           90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLK--SLPSGVFDRLTKLKELRLNTNQLQSIPAG---AFDKLTNLQTLSLST  164 (251)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCS
T ss_pred             CCCCcccccChhHhcccCCCCEEEcCCCcCC--CcChhHhccCCcccEEECcCCcCCccCHH---HcCcCcCCCEEECCC
Confidence            9999998666677889999999999999984  33344578899999999999999988775   678899999999999


Q ss_pred             CC
Q 038633          175 CN  176 (176)
Q Consensus       175 n~  176 (176)
                      |+
T Consensus       165 N~  166 (251)
T 3m19_A          165 NQ  166 (251)
T ss_dssp             SC
T ss_pred             Cc
Confidence            84

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.87  E-value=1.2e-21  Score=159.84  Aligned_cols=156  Identities=26%  Similarity=0.231  Sum_probs=116.1

Q ss_pred             ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEE
Q 038633           14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYL   93 (176)
Q Consensus        14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L   93 (176)
                      +++++.|++++|.+.+..+..+..+.+|++|++++|.+++..|..+..+++|++|++++|.+.+. +|..+..+++|++|
T Consensus       393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L  471 (768)
T 3rgz_A          393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE-IPQELMYVKTLETL  471 (768)
T ss_dssp             TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSC-CCGGGGGCTTCCEE
T ss_pred             cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCc-CCHHHcCCCCceEE
Confidence            45677777777777666666667777777777777777777777777777777777777777765 77777777778888


Q ss_pred             EeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCc
Q 038633           94 NLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLP  173 (176)
Q Consensus        94 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~  173 (176)
                      ++++|++.+..|..++.+++|+.|++++|++  ....+..+..+++|++|++++|.+.+..|.   .++.+++|+.|+++
T Consensus       472 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l--~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~---~l~~l~~L~~L~Ls  546 (768)
T 3rgz_A          472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRL--TGEIPKWIGRLENLAILKLSNNSFSGNIPA---ELGDCRSLIWLDLN  546 (768)
T ss_dssp             ECCSSCCCSCCCGGGGGCTTCCEEECCSSCC--CSCCCGGGGGCTTCCEEECCSSCCEEECCG---GGGGCTTCCEEECC
T ss_pred             EecCCcccCcCCHHHhcCCCCCEEEccCCcc--CCcCChHHhcCCCCCEEECCCCcccCcCCH---HHcCCCCCCEEECC
Confidence            8888877777777777777888888888777  333344567777888888888887776665   67777888888887


Q ss_pred             CC
Q 038633          174 NC  175 (176)
Q Consensus       174 ~n  175 (176)
                      +|
T Consensus       547 ~N  548 (768)
T 3rgz_A          547 TN  548 (768)
T ss_dssp             SS
T ss_pred             CC
Confidence            76

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.87  E-value=2.3e-21  Score=150.27  Aligned_cols=156  Identities=20%  Similarity=0.102  Sum_probs=130.7

Q ss_pred             ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEE
Q 038633           14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYL   93 (176)
Q Consensus        14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L   93 (176)
                      .+.++.|++++|.+.+..+..+..+.+|++|++++|.+++..|..|.++++|++|++++|.+... .+..+..+++|++|
T Consensus        31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L  109 (477)
T 2id5_A           31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI-PLGVFTGLSNLTKL  109 (477)
T ss_dssp             CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSC-CTTSSTTCTTCCEE
T ss_pred             CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCcc-CcccccCCCCCCEE
Confidence            46789999999999888777888899999999999999888888999999999999999998854 44567889999999


Q ss_pred             EeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCc
Q 038633           94 NLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLP  173 (176)
Q Consensus        94 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~  173 (176)
                      ++++|++....+..+..+++|+.|++++|.+.  ......+..+++|++|++++|.+.+.++.   .+..+++|+.|+++
T Consensus       110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L~l~  184 (477)
T 2id5_A          110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLV--YISHRAFSGLNSLEQLTLEKCNLTSIPTE---ALSHLHGLIVLRLR  184 (477)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEEECCTTCC--EECTTSSTTCTTCCEEEEESCCCSSCCHH---HHTTCTTCCEEEEE
T ss_pred             ECCCCccccCChhHccccccCCEEECCCCccc--eeChhhccCCCCCCEEECCCCcCcccChh---HhcccCCCcEEeCC
Confidence            99999998666777888999999999999883  33344578888999999999998877664   67778888888887


Q ss_pred             CC
Q 038633          174 NC  175 (176)
Q Consensus       174 ~n  175 (176)
                      +|
T Consensus       185 ~n  186 (477)
T 2id5_A          185 HL  186 (477)
T ss_dssp             SC
T ss_pred             CC
Confidence            76

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.86  E-value=6.9e-21  Score=139.18  Aligned_cols=154  Identities=23%  Similarity=0.128  Sum_probs=134.0

Q ss_pred             ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEE
Q 038633           14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYL   93 (176)
Q Consensus        14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L   93 (176)
                      .++++.|++++|.+.+..+..+..+.+|++|++++|.+++..+.  ..+++|++|++++|.+.  .+|..+..+++|++|
T Consensus        30 ~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~--~l~~~~~~l~~L~~L  105 (290)
T 1p9a_G           30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ--SLPLLGQTLPALTVL  105 (290)
T ss_dssp             CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCS--SCCCCTTTCTTCCEE
T ss_pred             CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCC--cCchhhccCCCCCEE
Confidence            47899999999999887777889999999999999999764332  78999999999999998  588888899999999


Q ss_pred             EeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCc
Q 038633           94 NLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLP  173 (176)
Q Consensus        94 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~  173 (176)
                      ++++|++....+..+..+++|+.|++++|.++.  .....+..+++|+.|++++|++...++.   .+..+++|+.|+++
T Consensus       106 ~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~l~~~---~~~~l~~L~~L~L~  180 (290)
T 1p9a_G          106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKT--LPPGLLTPTPKLEKLSLANNNLTELPAG---LLNGLENLDTLLLQ  180 (290)
T ss_dssp             ECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC--CCTTTTTTCTTCCEEECTTSCCSCCCTT---TTTTCTTCCEEECC
T ss_pred             ECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc--cChhhcccccCCCEEECCCCcCCccCHH---HhcCcCCCCEEECC
Confidence            999999985556779999999999999999953  3445578899999999999999977765   67789999999999


Q ss_pred             CCC
Q 038633          174 NCN  176 (176)
Q Consensus       174 ~n~  176 (176)
                      +|+
T Consensus       181 ~N~  183 (290)
T 1p9a_G          181 ENS  183 (290)
T ss_dssp             SSC
T ss_pred             CCc
Confidence            984

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.86  E-value=5.2e-21  Score=138.66  Aligned_cols=160  Identities=18%  Similarity=0.039  Sum_probs=123.2

Q ss_pred             ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEE
Q 038633           14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYL   93 (176)
Q Consensus        14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L   93 (176)
                      .++++.|++++|.+.+..+..+..+.+|++|++++|.+++..+..+..+++|++|++++|.+... .+..+..+++|++|
T Consensus        27 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L  105 (276)
T 2z62_A           27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKL  105 (276)
T ss_dssp             CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEE
T ss_pred             CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc-ChhhhcCCccccEE
Confidence            35689999999988877666778888999999999999877777888999999999999998865 66778889999999


Q ss_pred             EeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCc-EeeC
Q 038633           94 NLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLV-ELRL  172 (176)
Q Consensus        94 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~-~L~l  172 (176)
                      ++++|.+....+..++.+++|+.|++++|.++.. ..+..+..+++|++|++++|.+.+.++..+..+..++.+. .|++
T Consensus       106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~l  184 (276)
T 2z62_A          106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL  184 (276)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-CCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEEC
T ss_pred             ECCCCCccccCchhcccCCCCCEEECcCCcccee-cCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeec
Confidence            9999998755555688889999999999988432 1234577888999999999998877665333333333222 5566


Q ss_pred             cCC
Q 038633          173 PNC  175 (176)
Q Consensus       173 ~~n  175 (176)
                      ++|
T Consensus       185 s~n  187 (276)
T 2z62_A          185 SLN  187 (276)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            555

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.86  E-value=3.7e-21  Score=144.55  Aligned_cols=157  Identities=20%  Similarity=0.111  Sum_probs=125.6

Q ss_pred             ccccceeeccCccccCCCCcCcc-cCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccE
Q 038633           14 LSRIFALSLLRCCSVGSALAQPF-RDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRY   92 (176)
Q Consensus        14 ~~~l~~l~l~~~~~~~~~~~~~~-~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~   92 (176)
                      .+.++.|++++|.+.+..+..+. .+.+|++|++++|.+++..+..|..+++|++|++++|.+... .+..+..+++|++
T Consensus        38 ~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~  116 (361)
T 2xot_A           38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL-DEFLFSDLQALEV  116 (361)
T ss_dssp             CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCE
T ss_pred             CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcC-CHHHhCCCcCCCE
Confidence            45688899999988877666666 888999999999999887778899999999999999998855 5567888999999


Q ss_pred             EEeecccCCCCcchhccCCCCCCEEEccCCccCccccccccc---CCCCCccEEeccCCCCCCchhhhHHHhhcccc--C
Q 038633           93 LNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWL---SGLPSLKYLNLGGADLSKDAAYWLESISMLRS--L  167 (176)
Q Consensus        93 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~--L  167 (176)
                      |++++|++....|..+..+++|+.|++++|.++..+.  ..+   ..+++|++|+|++|.+...++.   .+..++.  +
T Consensus       117 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~--~~~~~~~~l~~L~~L~L~~N~l~~l~~~---~~~~l~~~~l  191 (361)
T 2xot_A          117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV--ELIKDGNKLPKLMLLDLSSNKLKKLPLT---DLQKLPAWVK  191 (361)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG--GGTC----CTTCCEEECCSSCCCCCCHH---HHHHSCHHHH
T ss_pred             EECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH--HHhcCcccCCcCCEEECCCCCCCccCHH---HhhhccHhhc
Confidence            9999999986667788899999999999998854332  223   5688999999999999877765   5666665  4


Q ss_pred             cEeeCcCCC
Q 038633          168 VELRLPNCN  176 (176)
Q Consensus       168 ~~L~l~~n~  176 (176)
                      +.|++++|.
T Consensus       192 ~~l~l~~N~  200 (361)
T 2xot_A          192 NGLYLHNNP  200 (361)
T ss_dssp             TTEECCSSC
T ss_pred             ceEEecCCC
Confidence            788888874

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.86  E-value=7.7e-21  Score=146.63  Aligned_cols=86  Identities=15%  Similarity=-0.053  Sum_probs=47.5

Q ss_pred             cccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEE
Q 038633           15 SRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLN   94 (176)
Q Consensus        15 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~   94 (176)
                      ++++.|++++|.+.+..+..+..+.+|++|++++|.+++..+..|.++++|++|++++|.+... .+..+..+++|++|+
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~  153 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI-PSGAFEYLSKLRELW  153 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC-CTTTSSSCTTCCEEE
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc-ChhhhcccCCCCEEE
Confidence            4555666666655555555555555556666666555555555555555555555555555533 333445555555555


Q ss_pred             eecccCC
Q 038633           95 LSGSFFS  101 (176)
Q Consensus        95 l~~~~~~  101 (176)
                      +++|++.
T Consensus       154 L~~N~l~  160 (452)
T 3zyi_A          154 LRNNPIE  160 (452)
T ss_dssp             CCSCCCC
T ss_pred             CCCCCcc
Confidence            5555554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.86  E-value=1.8e-20  Score=131.86  Aligned_cols=159  Identities=14%  Similarity=0.061  Sum_probs=114.5

Q ss_pred             ccccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccch-hhhcCCCCCcEEEccCccccCCcchhhhcC
Q 038633            8 LSDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPIS-PSLLQLKDLKYLDLSMNNFKGFKVPEFIGS   86 (176)
Q Consensus         8 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~   86 (176)
                      +++...|.. +.++++++.+.+. |...  ...+++|++++|.+++..+ ..|..+++|++|++++|.+... .+..+..
T Consensus         5 CP~~C~C~~-~~l~~s~n~l~~i-P~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~   79 (220)
T 2v70_A            5 CPEKCRCEG-TTVDCSNQKLNKI-PEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI-EEGAFEG   79 (220)
T ss_dssp             CCTTCEEET-TEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEE-CTTTTTT
T ss_pred             CCCCCEECC-CEeEeCCCCcccC-ccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEE-CHHHhCC
Confidence            343334433 4778887777653 3222  2345788888888876644 4477888888888888888855 5557888


Q ss_pred             cCCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhcccc
Q 038633           87 LKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRS  166 (176)
Q Consensus        87 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~  166 (176)
                      +++|++|++++|++.+..+..+..+++|+.|++++|.++  ...+..+..+++|++|++++|.+.+.++.   .+..+++
T Consensus        80 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~  154 (220)
T 2v70_A           80 ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT--CVGNDSFIGLSSVRLLSLYDNQITTVAPG---AFDTLHS  154 (220)
T ss_dssp             CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCC--CBCTTSSTTCTTCSEEECTTSCCCCBCTT---TTTTCTT
T ss_pred             CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCC--eECHhHcCCCccCCEEECCCCcCCEECHH---HhcCCCC
Confidence            888888888888887565666788888888888888874  33334577888888888888888877665   6777888


Q ss_pred             CcEeeCcCCC
Q 038633          167 LVELRLPNCN  176 (176)
Q Consensus       167 L~~L~l~~n~  176 (176)
                      |+.|++++|.
T Consensus       155 L~~L~L~~N~  164 (220)
T 2v70_A          155 LSTLNLLANP  164 (220)
T ss_dssp             CCEEECCSCC
T ss_pred             CCEEEecCcC
Confidence            8888888874

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.86  E-value=1.7e-20  Score=132.72  Aligned_cols=136  Identities=20%  Similarity=0.090  Sum_probs=87.0

Q ss_pred             ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEE
Q 038633           14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYL   93 (176)
Q Consensus        14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L   93 (176)
                      .++++.|++++|.+.+..+..+..+.+|++|++++|.++...+..|..+++|++|++++|.+... .+..+..+++|++|
T Consensus        39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~L~~L  117 (229)
T 3e6j_A           39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL-PSAVFDRLVHLKEL  117 (229)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred             CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCcc-ChhHhCcchhhCeE
Confidence            35566777777776666555666666777777777776554445566677777777777776643 44445666777777


Q ss_pred             EeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCc
Q 038633           94 NLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKD  153 (176)
Q Consensus        94 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  153 (176)
                      ++++|++. .+|..+..+++|+.|++++|.++.  .....+..+++|+.|++++|.+...
T Consensus       118 ~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          118 FMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS--IPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             ECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCC--CCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             eccCCccc-ccCcccccCCCCCEEECCCCcCCc--cCHHHHhCCCCCCEEEeeCCCccCC
Confidence            77777766 566666666777777777776632  2223456666777777777766543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.86  E-value=6.8e-21  Score=146.47  Aligned_cols=84  Identities=13%  Similarity=-0.064  Sum_probs=36.0

Q ss_pred             ccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEe
Q 038633           16 RIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNL   95 (176)
Q Consensus        16 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l   95 (176)
                      +++.|++++|.+....+..+..+.+|++|++++|.+++..+..|.++++|++|++++|.+... .+..+..+++|++|++
T Consensus        65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI-PNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSC-CTTTSCSCSSCCEEEC
T ss_pred             CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCee-CHhHhhccccCceeeC
Confidence            344444444444443333444444444444444444443344444444444444444444422 2223334444444444


Q ss_pred             ecccC
Q 038633           96 SGSFF  100 (176)
Q Consensus        96 ~~~~~  100 (176)
                      ++|++
T Consensus       144 ~~N~i  148 (440)
T 3zyj_A          144 RNNPI  148 (440)
T ss_dssp             CSCCC
T ss_pred             CCCcc
Confidence            44443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.86  E-value=9e-21  Score=150.76  Aligned_cols=160  Identities=16%  Similarity=0.020  Sum_probs=131.5

Q ss_pred             ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEE
Q 038633           14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYL   93 (176)
Q Consensus        14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L   93 (176)
                      .++++.|++++|.+.+..+..+..+.+|++|++++|.+++..|..|.++++|++|++++|.+... .|..+..+++|++|
T Consensus        31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L  109 (606)
T 3vq2_A           31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF-SPGSFSGLTSLENL  109 (606)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCC-CTTSSTTCTTCCEE
T ss_pred             CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccccc-ChhhcCCcccCCEE
Confidence            47899999999999888777888999999999999999888888999999999999999999976 78889999999999


Q ss_pred             EeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhcccc-CcEeeC
Q 038633           94 NLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRS-LVELRL  172 (176)
Q Consensus        94 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~-L~~L~l  172 (176)
                      ++++|++.+..+..++.+++|++|++++|.+... ..+..+..+++|++|++++|.+.+.++..++.+..++. +..|++
T Consensus       110 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l  188 (606)
T 3vq2_A          110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSC-KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM  188 (606)
T ss_dssp             ECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCC-CCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEEC
T ss_pred             EccCCccccccccccCCCCCCCEEeCCCCcccce-echHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeec
Confidence            9999999855557789999999999999988421 22445889999999999999998877663333333332 346777


Q ss_pred             cCC
Q 038633          173 PNC  175 (176)
Q Consensus       173 ~~n  175 (176)
                      ++|
T Consensus       189 ~~n  191 (606)
T 3vq2_A          189 SLN  191 (606)
T ss_dssp             TTC
T ss_pred             cCC
Confidence            665

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.85  E-value=8.7e-21  Score=150.95  Aligned_cols=159  Identities=18%  Similarity=0.045  Sum_probs=120.9

Q ss_pred             cccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEE
Q 038633           15 SRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLN   94 (176)
Q Consensus        15 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~   94 (176)
                      .+++.|++++|.|.+..+..+..+++|++|++++|.+++..+.+|.++++|++|++++|.+... .+..+..+++|++|+
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l-~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLV  130 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE-CGGGGTTCTTCCEEE
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCC-CHHHhcCCCCCCEEE
Confidence            5788999999988887777888889999999999998877778888999999999999988854 456678889999999


Q ss_pred             eecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccc-cCcEeeCc
Q 038633           95 LSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLR-SLVELRLP  173 (176)
Q Consensus        95 l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~-~L~~L~l~  173 (176)
                      +++|++.+..+..++.+++|++|++++|.++... .+..+..+++|++|++++|.+.+..+..+..+..++ ....++++
T Consensus       131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls  209 (635)
T 4g8a_A          131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFK-LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS  209 (635)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC-CCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred             CCCCcCCCCChhhhhcCcccCeeccccCccccCC-CchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcc
Confidence            9999987554556888899999999998874322 233467788899999999998877665333333332 22245554


Q ss_pred             CC
Q 038633          174 NC  175 (176)
Q Consensus       174 ~n  175 (176)
                      .|
T Consensus       210 ~n  211 (635)
T 4g8a_A          210 LN  211 (635)
T ss_dssp             TC
T ss_pred             cC
Confidence            43

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.85  E-value=6e-21  Score=138.30  Aligned_cols=164  Identities=23%  Similarity=0.122  Sum_probs=128.4

Q ss_pred             cccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcC
Q 038633            9 SDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLK   88 (176)
Q Consensus         9 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~   88 (176)
                      ..+..+++++.|++++|.+.+..+..+..+.+|++|++++|.+++..+..+..+++|++|++++|.+... .+..+..++
T Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~  124 (276)
T 2z62_A           46 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLK  124 (276)
T ss_dssp             TTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCS-TTCCCTTCT
T ss_pred             hHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCcccc-CchhcccCC
Confidence            3566788999999999988877666778888999999999999887778888999999999999988865 555678888


Q ss_pred             CccEEEeecccCCCC-cchhccCCCCCCEEEccCCccCcccc-c------------------------ccccCCCCCccE
Q 038633           89 ELRYLNLSGSFFSGT-IPQSLGNLTNLLYLDLNNFLDQSNQI-G------------------------LGWLSGLPSLKY  142 (176)
Q Consensus        89 ~L~~L~l~~~~~~~~-~p~~~~~l~~L~~L~l~~n~~~~~~~-~------------------------~~~~~~l~~L~~  142 (176)
                      +|++|++++|++... +|..++.+++|+.|++++|+++.... .                        ........+|++
T Consensus       125 ~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~  204 (276)
T 2z62_A          125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKE  204 (276)
T ss_dssp             TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEE
T ss_pred             CCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccE
Confidence            999999999988743 57888888899999998887732110 0                        011122337889


Q ss_pred             EeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633          143 LNLGGADLSKDAAYWLESISMLRSLVELRLPNCN  176 (176)
Q Consensus       143 L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~  176 (176)
                      |++++|.+.+.++.   .++.+++|+.|++++|.
T Consensus       205 L~L~~n~l~~~~~~---~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          205 LALDTNQLKSVPDG---IFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             EECCSSCCSCCCTT---TTTTCCSCCEEECCSSC
T ss_pred             EECCCCceeecCHh---HhcccccccEEEccCCc
Confidence            99999998877664   66788999999999874

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.85  E-value=1.9e-20  Score=135.54  Aligned_cols=158  Identities=22%  Similarity=0.179  Sum_probs=133.7

Q ss_pred             cccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcC
Q 038633            9 SDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLK   88 (176)
Q Consensus         9 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~   88 (176)
                      .....+++++.|++.+|.+...  .....+++|++|++++|.+++.  ..+..+++|++|++++|.+... .+..+..++
T Consensus        35 ~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~  109 (272)
T 3rfs_A           35 VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSL-PNGVFDKLT  109 (272)
T ss_dssp             ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCC-CTTTTTTCT
T ss_pred             cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCcc-ChhHhcCCc
Confidence            3455678899999999987653  3467789999999999999763  4788999999999999999965 666788999


Q ss_pred             CccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCc
Q 038633           89 ELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLV  168 (176)
Q Consensus        89 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~  168 (176)
                      +|++|++++|++.+..+..++.+++|++|++++|.++  ......+..+++|++|++++|.+.+.++.   .++.+++|+
T Consensus       110 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~  184 (272)
T 3rfs_A          110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ--SLPKGVFDKLTNLTELDLSYNQLQSLPEG---VFDKLTQLK  184 (272)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCC
T ss_pred             CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccC--ccCHHHhccCccCCEEECCCCCcCccCHH---HhcCCccCC
Confidence            9999999999998666666889999999999999984  33344578999999999999999987775   678899999


Q ss_pred             EeeCcCCC
Q 038633          169 ELRLPNCN  176 (176)
Q Consensus       169 ~L~l~~n~  176 (176)
                      +|++++|+
T Consensus       185 ~L~L~~N~  192 (272)
T 3rfs_A          185 DLRLYQNQ  192 (272)
T ss_dssp             EEECCSSC
T ss_pred             EEECCCCc
Confidence            99999984

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.85  E-value=1.1e-20  Score=150.21  Aligned_cols=157  Identities=17%  Similarity=-0.034  Sum_probs=136.4

Q ss_pred             ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEE
Q 038633           14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYL   93 (176)
Q Consensus        14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L   93 (176)
                      .+.++.|++++|.+.+..+..+..+.+|++|++++|.+++..|..|.++++|++|++++|.+... .|..+..+++|++|
T Consensus        32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L  110 (606)
T 3t6q_A           32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFM-AETALSGPKALKHL  110 (606)
T ss_dssp             CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEE-CTTTTSSCTTCCEE
T ss_pred             CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCccccc-ChhhhcccccccEe
Confidence            46799999999999988888899999999999999999988899999999999999999999976 78899999999999


Q ss_pred             EeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCc--Eee
Q 038633           94 NLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLV--ELR  171 (176)
Q Consensus        94 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~--~L~  171 (176)
                      ++++|++.+..+..++.+++|++|++++|.+...  ....+..+++|++|++++|.+.+.++.   .++.+++|+  .|+
T Consensus       111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~l~L~  185 (606)
T 3t6q_A          111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI--KLPKGFPTEKLKVLDFQNNAIHYLSKE---DMSSLQQATNLSLN  185 (606)
T ss_dssp             ECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCC--CCCTTCCCTTCCEEECCSSCCCEECHH---HHHTTTTCCSEEEE
T ss_pred             eccccCcccCCcchhccCCcccEEECCCCccccc--CcccccCCcccCEEEcccCcccccChh---hhhhhcccceeEEe
Confidence            9999999865577889999999999999998532  222355699999999999999877775   677788888  888


Q ss_pred             CcCCC
Q 038633          172 LPNCN  176 (176)
Q Consensus       172 l~~n~  176 (176)
                      +++|+
T Consensus       186 l~~n~  190 (606)
T 3t6q_A          186 LNGND  190 (606)
T ss_dssp             CTTCC
T ss_pred             cCCCc
Confidence            88874

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.85  E-value=1.4e-20  Score=144.98  Aligned_cols=131  Identities=24%  Similarity=0.212  Sum_probs=99.3

Q ss_pred             cceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEc
Q 038633           40 FDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDL  119 (176)
Q Consensus        40 ~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l  119 (176)
                      .+++|++++|.+++..|..+..+++|++|++++|.+... .|..+..+++|++|++++|++.+..|..++.+++|+.|++
T Consensus       276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  354 (455)
T 3v47_A          276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI-DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL  354 (455)
T ss_dssp             CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred             CceEEEecCccccccchhhcccCCCCCEEECCCCccccc-ChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence            455555556666555666777788888888888888865 6677888888888888888887555677788888888888


Q ss_pred             cCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633          120 NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN  176 (176)
Q Consensus       120 ~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~  176 (176)
                      ++|.+.  ...+..+..+++|++|++++|.+.+.++.   .++.+++|+.|++++|+
T Consensus       355 s~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          355 SYNHIR--ALGDQSFLGLPNLKELALDTNQLKSVPDG---IFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             CSSCCC--EECTTTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSSC
T ss_pred             CCCccc--ccChhhccccccccEEECCCCccccCCHh---HhccCCcccEEEccCCC
Confidence            888873  33344577888888888888888877664   56778888888888874

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.85  E-value=2e-20  Score=143.90  Aligned_cols=39  Identities=23%  Similarity=0.231  Sum_probs=20.7

Q ss_pred             cCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCC
Q 038633          134 LSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNC  175 (176)
Q Consensus       134 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n  175 (176)
                      +..+++|++|+|++|.+.+.++.   .+..+++|+.|++++|
T Consensus       251 ~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N  289 (440)
T 3zyj_A          251 FDNLQSLVEINLAHNNLTLLPHD---LFTPLHHLERIHLHHN  289 (440)
T ss_dssp             STTCTTCCEEECTTSCCCCCCTT---TTSSCTTCCEEECCSS
T ss_pred             hcCCCCCCEEECCCCCCCccChh---HhccccCCCEEEcCCC
Confidence            44555555555555555544443   4445555555555555

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.85  E-value=1.6e-20  Score=144.88  Aligned_cols=161  Identities=20%  Similarity=0.075  Sum_probs=137.3

Q ss_pred             ccccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCc
Q 038633            8 LSDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSL   87 (176)
Q Consensus         8 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l   87 (176)
                      ...+..+++|+.|++++|.+.+..+..+..+.+|++|++++|.++...+..|..+++|++|++++|.+... .+..+..+
T Consensus        92 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l  170 (452)
T 3zyi_A           92 ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESI-PSYAFNRV  170 (452)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEE-CTTTTTTC
T ss_pred             HHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCccee-CHhHHhcC
Confidence            45677889999999999999888778888999999999999999877777789999999999999999954 55678899


Q ss_pred             CCccEEEeecccCCCCcch-hccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhcccc
Q 038633           88 KELRYLNLSGSFFSGTIPQ-SLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRS  166 (176)
Q Consensus        88 ~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~  166 (176)
                      ++|++|++++|...+.++. .+..+++|+.|++++|.++..+    .+..+++|++|++++|.+.+.++.   .+..+++
T Consensus       171 ~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~  243 (452)
T 3zyi_A          171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP----NLTPLVGLEELEMSGNHFPEIRPG---SFHGLSS  243 (452)
T ss_dssp             TTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC----CCTTCTTCCEEECTTSCCSEECGG---GGTTCTT
T ss_pred             CcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc----cccccccccEEECcCCcCcccCcc---cccCccC
Confidence            9999999998554445554 5888999999999999985443    378899999999999999988776   7888999


Q ss_pred             CcEeeCcCCC
Q 038633          167 LVELRLPNCN  176 (176)
Q Consensus       167 L~~L~l~~n~  176 (176)
                      |+.|++++|+
T Consensus       244 L~~L~L~~n~  253 (452)
T 3zyi_A          244 LKKLWVMNSQ  253 (452)
T ss_dssp             CCEEECTTSC
T ss_pred             CCEEEeCCCc
Confidence            9999999884

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.85  E-value=5.4e-21  Score=143.11  Aligned_cols=154  Identities=21%  Similarity=0.191  Sum_probs=93.3

Q ss_pred             cccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEE
Q 038633           15 SRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLN   94 (176)
Q Consensus        15 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~   94 (176)
                      ++++.|++++|.+.+..+..+..+.+|++|++++|.+++..+..|.++++|++|++++|.+... .+..+..+++|++|+
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~  130 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL-SSSWFKPLSSLTFLN  130 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC-CHHHHTTCTTCSEEE
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC-CHhHhCCCccCCEEE
Confidence            4677777777776665555566667777777777777666666677777777777777777643 334466677777777


Q ss_pred             eecccCCCCcch--hccCCCCCCEEEccCCc-cCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEee
Q 038633           95 LSGSFFSGTIPQ--SLGNLTNLLYLDLNNFL-DQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELR  171 (176)
Q Consensus        95 l~~~~~~~~~p~--~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~  171 (176)
                      +++|++. .+|.  .+..+++|+.|++++|. +.  ......+..+++|++|++++|.+.+..+.   .++.+++|++|+
T Consensus       131 L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L~  204 (353)
T 2z80_A          131 LLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFT--KIQRKDFAGLTFLEELEIDASDLQSYEPK---SLKSIQNVSHLI  204 (353)
T ss_dssp             CTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCC--EECTTTTTTCCEEEEEEEEETTCCEECTT---TTTTCSEEEEEE
T ss_pred             CCCCCCc-ccCchhhhccCCCCcEEECCCCcccc--ccCHHHccCCCCCCEEECCCCCcCccCHH---HHhccccCCeec
Confidence            7777766 4443  46666777777776663 31  12222345555566666666555544343   444444555554


Q ss_pred             CcCC
Q 038633          172 LPNC  175 (176)
Q Consensus       172 l~~n  175 (176)
                      +++|
T Consensus       205 l~~n  208 (353)
T 2z80_A          205 LHMK  208 (353)
T ss_dssp             EECS
T ss_pred             CCCC
Confidence            4444

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.85  E-value=4.7e-21  Score=140.74  Aligned_cols=136  Identities=23%  Similarity=0.263  Sum_probs=77.3

Q ss_pred             cccCCcceEeecCCCCccccch-hhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCC-CcchhccCCC
Q 038633           35 PFRDSFDTYEDDAGHELGGPIS-PSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSG-TIPQSLGNLT  112 (176)
Q Consensus        35 ~~~~~~l~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~-~~p~~~~~l~  112 (176)
                      +..+.+|++|++++|.+++..+ ..+..+++|++|++++|.+... .+..+..+++|++|++++|.+.+ ..|..+..++
T Consensus        97 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  175 (306)
T 2z66_A           97 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR  175 (306)
T ss_dssp             EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC-STTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred             cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc-chhhcccCcCCCEEECCCCccccccchhHHhhCc
Confidence            3444455555555555543322 3455555555555555555543 44555555666666666665543 2455556666


Q ss_pred             CCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633          113 NLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN  176 (176)
Q Consensus       113 ~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~  176 (176)
                      +|+.|++++|.+.  ...+..+..+++|++|++++|.+.+.++.   .+..+++|+.|++++|+
T Consensus       176 ~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~  234 (306)
T 2z66_A          176 NLTFLDLSQCQLE--QLSPTAFNSLSSLQVLNMSHNNFFSLDTF---PYKCLNSLQVLDYSLNH  234 (306)
T ss_dssp             TCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTSCCSBCCSG---GGTTCTTCCEEECTTSC
T ss_pred             CCCEEECCCCCcC--CcCHHHhcCCCCCCEEECCCCccCccChh---hccCcccCCEeECCCCC
Confidence            6666666666652  22233456666777777777776655544   45666777777777663

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.85  E-value=7.6e-21  Score=131.49  Aligned_cols=151  Identities=15%  Similarity=0.045  Sum_probs=129.2

Q ss_pred             ccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCcc
Q 038633           12 HLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELR   91 (176)
Q Consensus        12 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~   91 (176)
                      ..+++++.|++++|.+....  ....+.+|++|++++|.++.  +..+..+++|++|++++|.+... .+..+..+++|+
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~  115 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSD-KIPNLSGLTSLT  115 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGG-GSCCCTTCTTCC
T ss_pred             hhcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcc-cChhhcCCCCCC
Confidence            45788999999999887433  57788899999999997753  35788999999999999999975 788899999999


Q ss_pred             EEEeecccCCCCcchhccCCCCCCEEEccCCc-cCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEe
Q 038633           92 YLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFL-DQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVEL  170 (176)
Q Consensus        92 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L  170 (176)
                      +|++++|++.+..|..++.+++|+.|++++|+ +...+    .+..+++|++|++++|.+.+.+     .+..+++|++|
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~----~l~~l~~L~~L~l~~n~i~~~~-----~l~~l~~L~~L  186 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM----PLKTLPELKSLNIQFDGVHDYR-----GIEDFPKLNQL  186 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG----GGGGCSSCCEEECTTBCCCCCT-----TGGGCSSCCEE
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH----hhcCCCCCCEEECCCCCCcChH-----HhccCCCCCEE
Confidence            99999999986678889999999999999998 64332    3788999999999999998653     56789999999


Q ss_pred             eCcCCC
Q 038633          171 RLPNCN  176 (176)
Q Consensus       171 ~l~~n~  176 (176)
                      ++++|+
T Consensus       187 ~l~~N~  192 (197)
T 4ezg_A          187 YAFSQT  192 (197)
T ss_dssp             EECBC-
T ss_pred             EeeCcc
Confidence            999984

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.85  E-value=5.6e-21  Score=148.14  Aligned_cols=161  Identities=18%  Similarity=0.074  Sum_probs=118.2

Q ss_pred             cccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcC
Q 038633            9 SDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLK   88 (176)
Q Consensus         9 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~   88 (176)
                      ..+..+++|+.|++++|.+.+..+..+..+.+|++|++++|.++...+..|.++++|++|++++|.+... .|..+..++
T Consensus        50 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~  128 (477)
T 2id5_A           50 DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL-LDYMFQDLY  128 (477)
T ss_dssp             TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEE-CTTTTTTCT
T ss_pred             hHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccC-ChhHccccc
Confidence            4566778888888888888777777778888888888888888766666677888888888888888765 667777888


Q ss_pred             CccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCc
Q 038633           89 ELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLV  168 (176)
Q Consensus        89 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~  168 (176)
                      +|++|++++|.+....+..+..+++|+.|++++|.++.  .....+..+++|+.|++++|.+.+.++.   .+..+++|+
T Consensus       129 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~i~~~~~~---~~~~l~~L~  203 (477)
T 2id5_A          129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS--IPTEALSHLHGLIVLRLRHLNINAIRDY---SFKRLYRLK  203 (477)
T ss_dssp             TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS--CCHHHHTTCTTCCEEEEESCCCCEECTT---CSCSCTTCC
T ss_pred             cCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc--cChhHhcccCCCcEEeCCCCcCcEeChh---hcccCcccc
Confidence            88888888888875556677778888888888887732  2233466677777777777777655543   455566666


Q ss_pred             EeeCcCC
Q 038633          169 ELRLPNC  175 (176)
Q Consensus       169 ~L~l~~n  175 (176)
                      .|++++|
T Consensus       204 ~L~l~~~  210 (477)
T 2id5_A          204 VLEISHW  210 (477)
T ss_dssp             EEEEECC
T ss_pred             eeeCCCC
Confidence            6666554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.85  E-value=1.6e-20  Score=149.34  Aligned_cols=161  Identities=16%  Similarity=0.109  Sum_probs=115.3

Q ss_pred             ccccccccceeeccCccccCCCC-cCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcC
Q 038633           10 DLHLLSRIFALSLLRCCSVGSAL-AQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLK   88 (176)
Q Consensus        10 ~~~~~~~l~~l~l~~~~~~~~~~-~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~   88 (176)
                      .+..+++++.|++++|.+.+..+ ..+..+..|++|++++|.+++..|..+..+++|++|++++|.+.+...|..+..++
T Consensus       394 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  473 (606)
T 3vq2_A          394 NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT  473 (606)
T ss_dssp             CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred             hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCC
Confidence            44556777777777777766655 45667777788888888777777777777888888888888777521566677778


Q ss_pred             CccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccc-cC
Q 038633           89 ELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLR-SL  167 (176)
Q Consensus        89 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~-~L  167 (176)
                      +|++|++++|++.+..|..++.+++|+.|++++|++.  ...+..+..+++|++|++++|.+...++    .+..++ +|
T Consensus       474 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~l~~N~l~~~p~----~~~~l~~~L  547 (606)
T 3vq2_A          474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL--FLDSSHYNQLYSLSTLDCSFNRIETSKG----ILQHFPKSL  547 (606)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS--CEEGGGTTTCTTCCEEECTTSCCCCEES----CGGGSCTTC
T ss_pred             CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCC--CcCHHHccCCCcCCEEECCCCcCcccCH----hHhhhcccC
Confidence            8888888888877555667777888888888888773  3334457777888888888888774433    456665 58


Q ss_pred             cEeeCcCCC
Q 038633          168 VELRLPNCN  176 (176)
Q Consensus       168 ~~L~l~~n~  176 (176)
                      +.|++++|.
T Consensus       548 ~~l~l~~N~  556 (606)
T 3vq2_A          548 AFFNLTNNS  556 (606)
T ss_dssp             CEEECCSCC
T ss_pred             cEEEccCCC
Confidence            888887773

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.85  E-value=3.1e-20  Score=140.66  Aligned_cols=112  Identities=13%  Similarity=-0.008  Sum_probs=79.4

Q ss_pred             cccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchh-hhcCcCC
Q 038633           11 LHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPE-FIGSLKE   89 (176)
Q Consensus        11 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~-~~~~l~~   89 (176)
                      +..+++++.|++++|.+.+..+..+..+.+|++|++++|.+++..|..+..+++|++|++++|.+..  +|. .+..+++
T Consensus        65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~  142 (390)
T 3o6n_A           65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS--LPRGIFHNTPK  142 (390)
T ss_dssp             HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTT
T ss_pred             hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc--CCHHHhcCCCC
Confidence            4456777777777777766655666777777777777777776666777777777777777777773  443 3566777


Q ss_pred             ccEEEeecccCCCCcchhccCCCCCCEEEccCCcc
Q 038633           90 LRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLD  124 (176)
Q Consensus        90 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~  124 (176)
                      |++|++++|.+.+..|..++.+++|+.|++++|.+
T Consensus       143 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  177 (390)
T 3o6n_A          143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL  177 (390)
T ss_dssp             CCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCC
T ss_pred             CcEEECCCCccCccChhhccCCCCCCEEECCCCcC
Confidence            77777777777655555667777777777777765

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.84  E-value=7.2e-21  Score=142.44  Aligned_cols=161  Identities=19%  Similarity=0.078  Sum_probs=135.8

Q ss_pred             cccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchh--hhcC
Q 038633            9 SDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPE--FIGS   86 (176)
Q Consensus         9 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~--~~~~   86 (176)
                      ..+..+++++.|++++|.+.+..+..+..+.+|++|++++|.+++..+..+..+++|++|++++|.+..  +|.  .+..
T Consensus        70 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~~~  147 (353)
T 2z80_A           70 SDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT--LGETSLFSH  147 (353)
T ss_dssp             TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS--SCSSCSCTT
T ss_pred             HHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc--cCchhhhcc
Confidence            357788999999999999988777788899999999999999987666669999999999999999994  554  6888


Q ss_pred             cCCccEEEeeccc-CCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccc
Q 038633           87 LKELRYLNLSGSF-FSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLR  165 (176)
Q Consensus        87 l~~L~~L~l~~~~-~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~  165 (176)
                      +++|++|++++|. +....+..++.+++|+.|++++|.+.  ...+..+..+++|++|++++|.+...+..   .+..++
T Consensus       148 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l~~n~l~~~~~~---~~~~~~  222 (353)
T 2z80_A          148 LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ--SYEPKSLKSIQNVSHLILHMKQHILLLEI---FVDVTS  222 (353)
T ss_dssp             CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC--EECTTTTTTCSEEEEEEEECSCSTTHHHH---HHHHTT
T ss_pred             CCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC--ccCHHHHhccccCCeecCCCCccccchhh---hhhhcc
Confidence            9999999999994 65444567889999999999999984  34445688999999999999999755543   455688


Q ss_pred             cCcEeeCcCCC
Q 038633          166 SLVELRLPNCN  176 (176)
Q Consensus       166 ~L~~L~l~~n~  176 (176)
                      +|+.|++++|+
T Consensus       223 ~L~~L~L~~n~  233 (353)
T 2z80_A          223 SVECLELRDTD  233 (353)
T ss_dssp             TEEEEEEESCB
T ss_pred             cccEEECCCCc
Confidence            99999999873

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.84  E-value=2.6e-20  Score=148.24  Aligned_cols=114  Identities=12%  Similarity=-0.041  Sum_probs=85.6

Q ss_pred             cccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCc
Q 038633           11 LHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKEL   90 (176)
Q Consensus        11 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L   90 (176)
                      +..+++|+.|++++|.+.+..+..+..+.+|++|++++|.+++..|..|..+++|++|++++|.+... .+..+..+++|
T Consensus        71 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L  149 (597)
T 3oja_B           71 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKL  149 (597)
T ss_dssp             HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTC
T ss_pred             HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCC-CHHHhccCCCC
Confidence            34567788888888887776666777778888888888888777777778888888888888887743 33445778888


Q ss_pred             cEEEeecccCCCCcchhccCCCCCCEEEccCCccC
Q 038633           91 RYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQ  125 (176)
Q Consensus        91 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~  125 (176)
                      ++|++++|.+.+..|..++.+++|+.|++++|.+.
T Consensus       150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  184 (597)
T 3oja_B          150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT  184 (597)
T ss_dssp             CEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             CEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC
Confidence            88888888887666666777788888888777663

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.84  E-value=8.6e-20  Score=127.10  Aligned_cols=137  Identities=20%  Similarity=0.125  Sum_probs=85.2

Q ss_pred             ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEE
Q 038633           14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYL   93 (176)
Q Consensus        14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L   93 (176)
                      .++++.|++++|.+.+..+..+..+.+|++|++++|.+++..+..|..+++|++|++++|.+... .+..+..+++|++|
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L  105 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL-PNGVFDKLTQLKEL  105 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCcc-CHhHhcCccCCCEE
Confidence            34566777777766655444555666677777777776655555566677777777777766643 34445666777777


Q ss_pred             EeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCc
Q 038633           94 NLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKD  153 (176)
Q Consensus        94 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  153 (176)
                      ++++|++.+..+..+..+++|+.|++++|.++.  .....+..+++|++|++++|.+.+.
T Consensus       106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~l~~L~~L~l~~N~~~~~  163 (208)
T 2o6s_A          106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS--VPDGVFDRLTSLQYIWLHDNPWDCT  163 (208)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC--CCTTTTTTCTTCCEEECCSCCBCCC
T ss_pred             EcCCCcCcccCHhHhccCCcCCEEECCCCccce--eCHHHhccCCCccEEEecCCCeecC
Confidence            777777664434445666777777777766632  2223356666777777777766544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.84  E-value=4.4e-20  Score=146.78  Aligned_cols=161  Identities=17%  Similarity=0.058  Sum_probs=113.7

Q ss_pred             ccccccccceeeccCccccCCCCc-CcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCc--chhhhcC
Q 038633           10 DLHLLSRIFALSLLRCCSVGSALA-QPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFK--VPEFIGS   86 (176)
Q Consensus        10 ~~~~~~~l~~l~l~~~~~~~~~~~-~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~p~~~~~   86 (176)
                      .+..+++++.|++++|.+.+..+. .+..+.+|++|++++|.+++..+..+..+++|++|++++|.+.+..  .+..+..
T Consensus       395 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  474 (606)
T 3t6q_A          395 AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT  474 (606)
T ss_dssp             TTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGG
T ss_pred             HhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhcc
Confidence            445566677777777666654433 3566677777777777777666777777777888888777776421  2245667


Q ss_pred             cCCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhcccc
Q 038633           87 LKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRS  166 (176)
Q Consensus        87 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~  166 (176)
                      +++|++|++++|++.+..|..++.+++|+.|++++|++.  ...+..+..+++| +|++++|.+.+.++.   .++.+++
T Consensus       475 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~l~~l~~L-~L~L~~N~l~~~~~~---~~~~l~~  548 (606)
T 3t6q_A          475 LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT--SSSIEALSHLKGI-YLNLASNHISIILPS---LLPILSQ  548 (606)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC--GGGGGGGTTCCSC-EEECCSSCCCCCCGG---GHHHHHT
T ss_pred             CCCccEEECCCCccCccChhhhccccCCCEEECCCCccC--cCChhHhCccccc-EEECcCCcccccCHh---hcccCCC
Confidence            778888888888877555677777888888888888773  3444557778888 888888888877765   5667788


Q ss_pred             CcEeeCcCCC
Q 038633          167 LVELRLPNCN  176 (176)
Q Consensus       167 L~~L~l~~n~  176 (176)
                      |+.|++++|.
T Consensus       549 L~~L~l~~N~  558 (606)
T 3t6q_A          549 QRTINLRQNP  558 (606)
T ss_dssp             SSEEECTTCC
T ss_pred             CCEEeCCCCC
Confidence            8888888874

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.84  E-value=3.5e-20  Score=130.32  Aligned_cols=136  Identities=17%  Similarity=0.083  Sum_probs=120.3

Q ss_pred             ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEE
Q 038633           14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYL   93 (176)
Q Consensus        14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L   93 (176)
                      .++++.|++++|.+.+..+..+..+.+|++|++++|.+++..|..|.++++|++|++++|.+... .+..+..+++|++|
T Consensus        31 ~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L  109 (220)
T 2v9t_B           31 PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL-PKSLFEGLFSLQLL  109 (220)
T ss_dssp             CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred             CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCcc-CHhHccCCCCCCEE
Confidence            36899999999999887777888999999999999999988899999999999999999999954 44557889999999


Q ss_pred             EeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCC
Q 038633           94 NLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSK  152 (176)
Q Consensus        94 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  152 (176)
                      ++++|++.+..|..+..+++|+.|++++|.++.  .....+..+++|++|++++|.+.-
T Consensus       110 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          110 LLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT--IAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC--CCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             ECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE--ECHHHHhCCCCCCEEEeCCCCcCC
Confidence            999999997778889999999999999999943  334458889999999999999853

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.84  E-value=4.4e-20  Score=148.64  Aligned_cols=157  Identities=20%  Similarity=0.089  Sum_probs=134.0

Q ss_pred             ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEE
Q 038633           14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYL   93 (176)
Q Consensus        14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L   93 (176)
                      .++++.|++++|.+.+..+..+..+.+|++|++++|.+++..|..+.++++|++|++++|.+... .+..+..+++|++|
T Consensus        24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L  102 (680)
T 1ziw_A           24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQL-SDKTFAFCTNLTEL  102 (680)
T ss_dssp             CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCC-CTTTTTTCTTCSEE
T ss_pred             CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCcc-ChhhhccCCCCCEE
Confidence            46899999999999887777788999999999999999988899999999999999999999954 44578899999999


Q ss_pred             EeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhh--ccccCcEee
Q 038633           94 NLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESIS--MLRSLVELR  171 (176)
Q Consensus        94 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--~~~~L~~L~  171 (176)
                      ++++|++.+..|..++.+++|++|++++|.+.  ......+..+++|++|++++|.+.+.++.   .++  .+++|++|+
T Consensus       103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~~~~~L~~L~  177 (680)
T 1ziw_A          103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS--STKLGTQVQLENLQELLLSNNKIQALKSE---ELDIFANSSLKKLE  177 (680)
T ss_dssp             ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCS--CCCCCSSSCCTTCCEEECCSSCCCCBCHH---HHGGGTTCEESEEE
T ss_pred             ECCCCccCccChhHccccCCCCEEECCCCccc--ccCchhhcccccCCEEEccCCcccccCHH---HhhccccccccEEE
Confidence            99999998666678999999999999999884  33444578899999999999999887765   433  458899999


Q ss_pred             CcCCC
Q 038633          172 LPNCN  176 (176)
Q Consensus       172 l~~n~  176 (176)
                      +++|+
T Consensus       178 L~~n~  182 (680)
T 1ziw_A          178 LSSNQ  182 (680)
T ss_dssp             CTTCC
T ss_pred             CCCCc
Confidence            98873

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.84  E-value=2e-20  Score=144.07  Aligned_cols=140  Identities=16%  Similarity=0.101  Sum_probs=113.9

Q ss_pred             ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccc-hhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccE
Q 038633           14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPI-SPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRY   92 (176)
Q Consensus        14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~   92 (176)
                      .++++.|++++|.+.+..+..+..+.+|++|++++|.+.+.+ +..|..+++|++|++++|.+... .|..+..+++|++
T Consensus        29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~  107 (455)
T 3v47_A           29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL-ETGAFNGLANLEV  107 (455)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEE-CTTTTTTCTTCCE
T ss_pred             CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCcc-ChhhccCcccCCE
Confidence            367899999999988877778888999999999999887544 56788899999999999998865 6888888999999


Q ss_pred             EEeecccCCCCcchh--ccCCCCCCEEEccCCccCccccccc-ccCCCCCccEEeccCCCCCCchhh
Q 038633           93 LNLSGSFFSGTIPQS--LGNLTNLLYLDLNNFLDQSNQIGLG-WLSGLPSLKYLNLGGADLSKDAAY  156 (176)
Q Consensus        93 L~l~~~~~~~~~p~~--~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~  156 (176)
                      |++++|++.+..|..  ++.+++|++|++++|.+..  ..+. .+..+++|++|++++|.+.+..+.
T Consensus       108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  172 (455)
T 3v47_A          108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK--IQPASFFLNMRRFHVLDLTFNKVKSICEE  172 (455)
T ss_dssp             EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCS--CCCCGGGGGCTTCCEEECTTCCBSCCCTT
T ss_pred             EeCCCCCCCccccCcccccCcccCCEEECCCCccCc--cCcccccCCCCcccEEeCCCCcccccChh
Confidence            999999987545554  7888999999999998842  2222 267888999999999988876654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.84  E-value=1.3e-20  Score=148.22  Aligned_cols=154  Identities=23%  Similarity=0.218  Sum_probs=115.0

Q ss_pred             ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEE
Q 038633           14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYL   93 (176)
Q Consensus        14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L   93 (176)
                      .++++.|++++|.+.+..+..+..+.+|++|++++|.+++..|..|..+++|++|++++|.+... .|..+..+++|++|
T Consensus        25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L  103 (549)
T 2z81_A           25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL-SSSWFGPLSSLKYL  103 (549)
T ss_dssp             CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC-CHHHHTTCTTCCEE
T ss_pred             CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc-CHHHhccCCCCcEE
Confidence            36788999999888877777788888899999999988887778888889999999999988865 66668888899999


Q ss_pred             EeecccCCC-CcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeC
Q 038633           94 NLSGSFFSG-TIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRL  172 (176)
Q Consensus        94 ~l~~~~~~~-~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l  172 (176)
                      ++++|++.+ ..|..++.+++|+.|++++|... .......+..+++|++|++++|.+.+..+.   .++.+++|++|++
T Consensus       104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~l  179 (549)
T 2z81_A          104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF-SEIRRIDFAGLTSLNELEIKALSLRNYQSQ---SLKSIRDIHHLTL  179 (549)
T ss_dssp             ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSC-CEECTTTTTTCCEEEEEEEEETTCCEECTT---TTTTCSEEEEEEE
T ss_pred             ECCCCcccccchhhhhhccCCccEEECCCCccc-cccCHhhhhcccccCeeeccCCcccccChh---hhhccccCceEec
Confidence            999988864 34567788888888888888731 122223467778888888888877765543   3333333333333

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.84  E-value=8.6e-20  Score=129.05  Aligned_cols=149  Identities=15%  Similarity=0.012  Sum_probs=124.2

Q ss_pred             ceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeec
Q 038633           18 FALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSG   97 (176)
Q Consensus        18 ~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~   97 (176)
                      ++++.+++.+......   ...++++|++++|.+++..+..|..+++|++|++++|.+... .+..+..+++|++|++++
T Consensus        22 ~~v~c~~~~l~~ip~~---~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i-~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           22 TTVDCRSKRHASVPAG---IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL-PVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TEEECTTSCCSSCCSC---CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCS
T ss_pred             CEeEccCCCcCccCCC---CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc-ChhhcccCCCcCEEECCC
Confidence            4577776666544322   237899999999999988899999999999999999999854 445678999999999999


Q ss_pred             ccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633           98 SFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN  176 (176)
Q Consensus        98 ~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~  176 (176)
                      |++....+..+..+++|+.|++++|.++..   +..+..+++|++|++++|.+.+.++.   .+..+++|+.|++++|.
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~l---p~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLTEL---PRGIERLTHLTHLALDQNQLKSIPHG---AFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCSC---CTTGGGCTTCSEEECCSSCCCCCCTT---TTTTCTTCCEEECTTSC
T ss_pred             CcCCccChhHhCcchhhCeEeccCCccccc---CcccccCCCCCEEECCCCcCCccCHH---HHhCCCCCCEEEeeCCC
Confidence            999855556678999999999999999633   23468899999999999999987765   67889999999999984

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.83  E-value=1.5e-20  Score=133.66  Aligned_cols=152  Identities=15%  Similarity=0.052  Sum_probs=75.1

Q ss_pred             ccceeeccCccccCCCCcCcccCCcceEeecCCCC-ccccchhhhcCCCCCcEEEccC-ccccCCcchhhhcCcCCccEE
Q 038633           16 RIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHE-LGGPISPSLLQLKDLKYLDLSM-NNFKGFKVPEFIGSLKELRYL   93 (176)
Q Consensus        16 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~p~~~~~l~~L~~L   93 (176)
                      +++.|++++|.+.+..+..+..+++|++|++++|. ++...+..|..+++|++|++++ |.+... .+..+..+++|++|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i-~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI-DPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE-CTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc-CHHHhCCCCCCCEE
Confidence            45555555555554444445555555555555554 5444444555555555555555 555532 33344455555555


Q ss_pred             EeecccCCCCcch---------------------------hccCCCCCC-EEEccCCccCcccccccccCCCCCccEEec
Q 038633           94 NLSGSFFSGTIPQ---------------------------SLGNLTNLL-YLDLNNFLDQSNQIGLGWLSGLPSLKYLNL  145 (176)
Q Consensus        94 ~l~~~~~~~~~p~---------------------------~~~~l~~L~-~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l  145 (176)
                      ++++|++. .+|.                           .+..+++|+ .+++++|.++.  .....+.. ++|++|++
T Consensus       111 ~l~~n~l~-~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~--i~~~~~~~-~~L~~L~L  186 (239)
T 2xwt_C          111 GIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS--VQGYAFNG-TKLDAVYL  186 (239)
T ss_dssp             EEEEECCC-SCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE--ECTTTTTT-CEEEEEEC
T ss_pred             eCCCCCCc-cccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc--cCHhhcCC-CCCCEEEc
Confidence            55555544 2332                           344445555 55555554421  11112222 45555555


Q ss_pred             cCCC-CCCchhhhHHHhhcc-ccCcEeeCcCC
Q 038633          146 GGAD-LSKDAAYWLESISML-RSLVELRLPNC  175 (176)
Q Consensus       146 ~~n~-l~~~~~~~~~~l~~~-~~L~~L~l~~n  175 (176)
                      ++|. +.+.++.   .+..+ ++|+.|++++|
T Consensus       187 ~~n~~l~~i~~~---~~~~l~~~L~~L~l~~N  215 (239)
T 2xwt_C          187 NKNKYLTVIDKD---AFGGVYSGPSLLDVSQT  215 (239)
T ss_dssp             TTCTTCCEECTT---TTTTCSBCCSEEECTTC
T ss_pred             CCCCCcccCCHH---HhhccccCCcEEECCCC
Confidence            5553 5444333   44455 56666666555

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.83  E-value=6.7e-20  Score=144.61  Aligned_cols=158  Identities=18%  Similarity=0.064  Sum_probs=131.8

Q ss_pred             ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEE
Q 038633           14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYL   93 (176)
Q Consensus        14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L   93 (176)
                      .++++.|++++|.+.+..+..+..+.+|++|++++|.+++..+..|.++++|++|++++|.+... .|..+..+++|++|
T Consensus        27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L  105 (570)
T 2z63_A           27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKL  105 (570)
T ss_dssp             CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEE
T ss_pred             cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCcc-CHhhhcCccccccc
Confidence            46799999999999887777888999999999999999888788899999999999999999865 66789999999999


Q ss_pred             EeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccC----cE
Q 038633           94 NLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSL----VE  169 (176)
Q Consensus        94 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L----~~  169 (176)
                      ++++|++....+..++.+++|++|++++|.+... ..+..+..+++|++|++++|.+.+.++.   .++.++.|    ..
T Consensus       106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~-~lp~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~~~~~  181 (570)
T 2z63_A          106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-KLPEYFSNLTNLEHLDLSSNKIQSIYCT---DLRVLHQMPLLNLS  181 (570)
T ss_dssp             ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCC-CCCGGGGGCTTCCEEECTTSCCCEECGG---GGHHHHTCTTCCCE
T ss_pred             cccccccccCCCccccccccccEEecCCCcccee-cChhhhcccCCCCEEeCcCCccceecHH---Hccchhccchhhhh
Confidence            9999999844444688999999999999988431 2234578899999999999999877765   55555666    77


Q ss_pred             eeCcCCC
Q 038633          170 LRLPNCN  176 (176)
Q Consensus       170 L~l~~n~  176 (176)
                      +++++|+
T Consensus       182 L~l~~n~  188 (570)
T 2z63_A          182 LDLSLNP  188 (570)
T ss_dssp             EECTTCC
T ss_pred             cccCCCC
Confidence            8887763

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.83  E-value=1.9e-19  Score=125.35  Aligned_cols=150  Identities=23%  Similarity=0.145  Sum_probs=121.7

Q ss_pred             ceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeec
Q 038633           18 FALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSG   97 (176)
Q Consensus        18 ~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~   97 (176)
                      +.++.+++.+.....   ....++++|++++|.+++..+..+..+++|++|++++|.+... .+..+..+++|++|++++
T Consensus        10 ~~v~c~~~~l~~~p~---~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           10 TTVECYSQGRTSVPT---GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             TEEECCSSCCSSCCS---CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCccCCCC---CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCC
Confidence            455666655544322   2345799999999999877777788999999999999999955 555678899999999999


Q ss_pred             ccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633           98 SFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN  176 (176)
Q Consensus        98 ~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~  176 (176)
                      |++.+..+..++.+++|+.|++++|.++  ......+..+++|++|++++|.+.+.++.   .+..+++|+.|++++|.
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~l~~N~l~~~~~~---~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A           86 NQLQSLPNGVFDKLTQLKELALNTNQLQ--SLPDGVFDKLTQLKDLRLYQNQLKSVPDG---VFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSCC
T ss_pred             CcCCccCHhHhcCccCCCEEEcCCCcCc--ccCHhHhccCCcCCEEECCCCccceeCHH---HhccCCCccEEEecCCC
Confidence            9998555556789999999999999984  33344578899999999999999977765   67889999999999984

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.83  E-value=1.9e-19  Score=136.30  Aligned_cols=82  Identities=18%  Similarity=0.121  Sum_probs=46.4

Q ss_pred             cCCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhcccc
Q 038633           87 LKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRS  166 (176)
Q Consensus        87 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~  166 (176)
                      +++|++|++++|.+.+..|..+..+++|+.|++++|+++..+   ..+..+++|++|++++|.+.+.++    .++.+++
T Consensus       247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~l~~L~~L~L~~n~l~~~~~----~~~~l~~  319 (390)
T 3o6n_A          247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN---LYGQPIPTLKVLDLSHNHLLHVER----NQPQFDR  319 (390)
T ss_dssp             CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEE---CSSSCCTTCCEEECCSSCCCCCGG----GHHHHTT
T ss_pred             CCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccC---cccCCCCCCCEEECCCCcceecCc----cccccCc
Confidence            344555555555554344455555666666666666553221   123456677777777777765443    3455667


Q ss_pred             CcEeeCcCC
Q 038633          167 LVELRLPNC  175 (176)
Q Consensus       167 L~~L~l~~n  175 (176)
                      |+.|++++|
T Consensus       320 L~~L~L~~N  328 (390)
T 3o6n_A          320 LENLYLDHN  328 (390)
T ss_dssp             CSEEECCSS
T ss_pred             CCEEECCCC
Confidence            777777666

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.83  E-value=8.1e-21  Score=152.15  Aligned_cols=166  Identities=14%  Similarity=0.053  Sum_probs=115.0

Q ss_pred             eeecccccccccccceeeccCccccCCCCcCcccCCcceEeecCCCC---------------------------------
Q 038633            4 FVFALSDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHE---------------------------------   50 (176)
Q Consensus         4 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~---------------------------------   50 (176)
                      .++.|..-   ..++.|+++++.+.+..+.....++.|++|++++|.                                 
T Consensus        73 ~GV~C~~~---~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~  149 (636)
T 4eco_A           73 PGVSLNSN---GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTF  149 (636)
T ss_dssp             TTEEECTT---CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHH
T ss_pred             CCeEEcCC---CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhh
Confidence            55555432   577888888888877777777888888888887773                                 


Q ss_pred             ---------------------------------------------ccccchhhhcCCCCCcEEEccCccccCC-------
Q 038633           51 ---------------------------------------------LGGPISPSLLQLKDLKYLDLSMNNFKGF-------   78 (176)
Q Consensus        51 ---------------------------------------------l~~~~~~~l~~l~~L~~L~l~~~~~~~~-------   78 (176)
                                                                   +++ +|..+.++++|++|++++|.+++.       
T Consensus       150 l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  228 (636)
T 4eco_A          150 VDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWE  228 (636)
T ss_dssp             TCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCS
T ss_pred             hccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccccc
Confidence                                                         334 677788888888888888887740       


Q ss_pred             ---------cchhhhc--CcCCccEEEeecccCCCCcchhccCCCCCCEEEccCCc-cCcccccccccCC------CCCc
Q 038633           79 ---------KVPEFIG--SLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFL-DQSNQIGLGWLSG------LPSL  140 (176)
Q Consensus        79 ---------~~p~~~~--~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~------l~~L  140 (176)
                               .+|..++  .+++|++|++++|++.+..|..++.+++|+.|++++|+ ++. ...+..+..      +++|
T Consensus       229 ~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~-~~lp~~~~~L~~~~~l~~L  307 (636)
T 4eco_A          229 NENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG-EQLKDDWQALADAPVGEKI  307 (636)
T ss_dssp             CTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCH-HHHHHHHHHHHHSGGGGTC
T ss_pred             ccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCcc-ccchHHHHhhhccccCCCC
Confidence                     0677777  78888888888888877788888888888888888887 531 011222333      3677


Q ss_pred             cEEeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633          141 KYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN  176 (176)
Q Consensus       141 ~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~  176 (176)
                      ++|++++|.+...+..  ..++.+++|++|++++|+
T Consensus       308 ~~L~L~~n~l~~ip~~--~~l~~l~~L~~L~L~~N~  341 (636)
T 4eco_A          308 QIIYIGYNNLKTFPVE--TSLQKMKKLGMLECLYNQ  341 (636)
T ss_dssp             CEEECCSSCCSSCCCH--HHHTTCTTCCEEECCSCC
T ss_pred             CEEECCCCcCCccCch--hhhccCCCCCEEeCcCCc
Confidence            7777777777633321  145667777777777663

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.83  E-value=9.6e-20  Score=135.25  Aligned_cols=156  Identities=17%  Similarity=0.087  Sum_probs=106.0

Q ss_pred             ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEE
Q 038633           14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYL   93 (176)
Q Consensus        14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L   93 (176)
                      .++++.|++++|.+.+..+..+..+.+|++|++++|.+++..|..+..+++|++|++++|.+.  .+|..+.  ++|++|
T Consensus        53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~l~~~~~--~~L~~L  128 (332)
T 2ft3_A           53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV--EIPPNLP--SSLVEL  128 (332)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC--SCCSSCC--TTCCEE
T ss_pred             CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC--ccCcccc--ccCCEE
Confidence            357888888888887766667788888888888888888777888888888888888888877  3555443  567777


Q ss_pred             EeecccCCCCcchhccCCCCCCEEEccCCccCccc--------------------------------------------c
Q 038633           94 NLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQ--------------------------------------------I  129 (176)
Q Consensus        94 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~--------------------------------------------~  129 (176)
                      ++++|++....+..+..+++|+.|++++|.++...                                            .
T Consensus       129 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~  208 (332)
T 2ft3_A          129 RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAI  208 (332)
T ss_dssp             ECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCC
T ss_pred             ECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCcc
Confidence            77777776433445666666777766666552111                                            1


Q ss_pred             cccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633          130 GLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN  176 (176)
Q Consensus       130 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~  176 (176)
                      ....+..+++|++|++++|.+.+.++.   .++.+++|++|++++|+
T Consensus       209 ~~~~l~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~  252 (332)
T 2ft3_A          209 ELEDLLRYSKLYRLGLGHNQIRMIENG---SLSFLPTLRELHLDNNK  252 (332)
T ss_dssp             CTTSSTTCTTCSCCBCCSSCCCCCCTT---GGGGCTTCCEEECCSSC
T ss_pred             CHHHhcCCCCCCEEECCCCcCCcCChh---HhhCCCCCCEEECCCCc
Confidence            112345566666666666666655554   55666777777777663

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.83  E-value=1.8e-19  Score=133.68  Aligned_cols=157  Identities=17%  Similarity=0.073  Sum_probs=88.2

Q ss_pred             cccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCcccc------------------
Q 038633           15 SRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFK------------------   76 (176)
Q Consensus        15 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~------------------   76 (176)
                      +.++.|++++|.+.+..+..+..+.+|++|++++|.+++..|..+..+++|++|++++|.+.                  
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n  131 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHEN  131 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSS
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCC
Confidence            46677777777776665556666777777777777776666777777777777777776655                  


Q ss_pred             ---CCcchhhhcCcCCccEEEeecccCCC--CcchhccCCCCCCEEEccCCccCccc-------------------cccc
Q 038633           77 ---GFKVPEFIGSLKELRYLNLSGSFFSG--TIPQSLGNLTNLLYLDLNNFLDQSNQ-------------------IGLG  132 (176)
Q Consensus        77 ---~~~~p~~~~~l~~L~~L~l~~~~~~~--~~p~~~~~l~~L~~L~l~~n~~~~~~-------------------~~~~  132 (176)
                         .. .+..+..+++|++|++++|.+..  ..+..+..+++|+.|++++|.++..+                   ....
T Consensus       132 ~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~  210 (330)
T 1xku_A          132 EITKV-RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAA  210 (330)
T ss_dssp             CCCBB-CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTG
T ss_pred             ccccc-CHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHH
Confidence               21 23334555556666666655532  23344455555555555555442111                   1112


Q ss_pred             ccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCC
Q 038633          133 WLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNC  175 (176)
Q Consensus       133 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n  175 (176)
                      .+..+++|++|++++|.+.+.++.   .++.+++|++|++++|
T Consensus       211 ~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~N  250 (330)
T 1xku_A          211 SLKGLNNLAKLGLSFNSISAVDNG---SLANTPHLRELHLNNN  250 (330)
T ss_dssp             GGTTCTTCCEEECCSSCCCEECTT---TGGGSTTCCEEECCSS
T ss_pred             HhcCCCCCCEEECCCCcCceeChh---hccCCCCCCEEECCCC
Confidence            344555555555555555544433   4445555555555555

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.83  E-value=8.9e-21  Score=139.81  Aligned_cols=159  Identities=19%  Similarity=0.085  Sum_probs=95.4

Q ss_pred             cccccceeeccCccccCCCCcCc--ccCCcceEeecCCCCccccchhhhcCC-----CCCcEEEccCccccCCcchhhhc
Q 038633           13 LLSRIFALSLLRCCSVGSALAQP--FRDSFDTYEDDAGHELGGPISPSLLQL-----KDLKYLDLSMNNFKGFKVPEFIG   85 (176)
Q Consensus        13 ~~~~l~~l~l~~~~~~~~~~~~~--~~~~~l~~L~l~~n~l~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~p~~~~   85 (176)
                      .+++++.|++++|.+.+..+...  ..+.+|++|++++|.+++. |..+..+     ++|++|++++|.+... .|..+.
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~-~~~~~~  170 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNF-SCEQVR  170 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCC-CTTTCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccc-hHHHhc
Confidence            35677777777777776555544  6667777777777777655 5555555     6777777777777654 556666


Q ss_pred             CcCCccEEEeecccCCCC--cchhc--cCCCCCCEEEccCCccCcccccc-cccCCCCCccEEeccCCCCCCchhhhHHH
Q 038633           86 SLKELRYLNLSGSFFSGT--IPQSL--GNLTNLLYLDLNNFLDQSNQIGL-GWLSGLPSLKYLNLGGADLSKDAAYWLES  160 (176)
Q Consensus        86 ~l~~L~~L~l~~~~~~~~--~p~~~--~~l~~L~~L~l~~n~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  160 (176)
                      .+++|++|++++|++.+.  .|..+  +.+++|++|++++|.++...... ..+..+++|++|++++|.+.+.++.  ..
T Consensus       171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~  248 (312)
T 1wwl_A          171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA--PS  248 (312)
T ss_dssp             CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC--SC
T ss_pred             cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch--hh
Confidence            777777777777765432  23333  56666777777776664221111 1234556666666666666654421  03


Q ss_pred             hhccccCcEeeCcCC
Q 038633          161 ISMLRSLVELRLPNC  175 (176)
Q Consensus       161 l~~~~~L~~L~l~~n  175 (176)
                      +..+++|++|++++|
T Consensus       249 ~~~l~~L~~L~Ls~N  263 (312)
T 1wwl_A          249 CDWPSQLNSLNLSFT  263 (312)
T ss_dssp             CCCCTTCCEEECTTS
T ss_pred             hhhcCCCCEEECCCC
Confidence            334556666666655

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.83  E-value=2.3e-19  Score=142.73  Aligned_cols=84  Identities=18%  Similarity=0.125  Sum_probs=49.5

Q ss_pred             CcCCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccc
Q 038633           86 SLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLR  165 (176)
Q Consensus        86 ~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~  165 (176)
                      .+++|++|++++|.+.+..|..++.+++|+.|++++|.+...+   ..+..+++|++|++++|.+...++    .++.++
T Consensus       252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~---~~~~~l~~L~~L~Ls~N~l~~i~~----~~~~l~  324 (597)
T 3oja_B          252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN---LYGQPIPTLKVLDLSHNHLLHVER----NQPQFD  324 (597)
T ss_dssp             GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEE---CSSSCCTTCCEEECCSSCCCCCGG----GHHHHT
T ss_pred             cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCC---cccccCCCCcEEECCCCCCCccCc----ccccCC
Confidence            3445555555555555444555666666666666666663321   224556777777777777765443    445566


Q ss_pred             cCcEeeCcCCC
Q 038633          166 SLVELRLPNCN  176 (176)
Q Consensus       166 ~L~~L~l~~n~  176 (176)
                      +|+.|++++|.
T Consensus       325 ~L~~L~L~~N~  335 (597)
T 3oja_B          325 RLENLYLDHNS  335 (597)
T ss_dssp             TCSEEECCSSC
T ss_pred             CCCEEECCCCC
Confidence            77777777663

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.83  E-value=4.5e-20  Score=145.17  Aligned_cols=164  Identities=19%  Similarity=0.125  Sum_probs=136.7

Q ss_pred             ccccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCc
Q 038633            8 LSDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSL   87 (176)
Q Consensus         8 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l   87 (176)
                      ...+..++++++|++++|.+.+..+..+..+.+|++|++++|.+++..+..|..+++|++|++++|.+.....|..+..+
T Consensus        43 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l  122 (549)
T 2z81_A           43 HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL  122 (549)
T ss_dssp             SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC
T ss_pred             hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhcc
Confidence            35677899999999999999988778889999999999999999988888899999999999999999864356788899


Q ss_pred             CCccEEEeecccCCCCcc-hhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhcccc
Q 038633           88 KELRYLNLSGSFFSGTIP-QSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRS  166 (176)
Q Consensus        88 ~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~  166 (176)
                      ++|++|++++|.+.+..| ..++.+++|++|++++|.++  ...+..+..+++|++|++++|.+...+..   .++.+++
T Consensus       123 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~l~~n~~~~~~~~---~~~~l~~  197 (549)
T 2z81_A          123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR--NYQSQSLKSIRDIHHLTLHLSESAFLLEI---FADILSS  197 (549)
T ss_dssp             TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC--EECTTTTTTCSEEEEEEEECSBSTTHHHH---HHHSTTT
T ss_pred             CCccEEECCCCccccccCHhhhhcccccCeeeccCCccc--ccChhhhhccccCceEecccCcccccchh---hHhhccc
Confidence            999999999998544665 57889999999999999984  33445578888899999999887644432   3456788


Q ss_pred             CcEeeCcCCC
Q 038633          167 LVELRLPNCN  176 (176)
Q Consensus       167 L~~L~l~~n~  176 (176)
                      |+.|++++|+
T Consensus       198 L~~L~L~~n~  207 (549)
T 2z81_A          198 VRYLELRDTN  207 (549)
T ss_dssp             BSEEEEESCB
T ss_pred             ccEEEccCCc
Confidence            8888888763

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=5.2e-19  Score=130.20  Aligned_cols=149  Identities=24%  Similarity=0.276  Sum_probs=92.6

Q ss_pred             cccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcC
Q 038633            9 SDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLK   88 (176)
Q Consensus         9 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~   88 (176)
                      +.+..+++++.|++++|.+.+..+  +..+.+|++|++++|.+++.  ..+..+++|++|++++|.+..  ++. +..++
T Consensus        57 ~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~--~~~-l~~l~  129 (308)
T 1h6u_A           57 EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITD--VTP-LAGLS  129 (308)
T ss_dssp             TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCC--CGG-GTTCT
T ss_pred             hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCC--chh-hcCCC
Confidence            345566777777777776655433  56666777777777776542  246667777777777777663  332 56667


Q ss_pred             CccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCc
Q 038633           89 ELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLV  168 (176)
Q Consensus        89 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~  168 (176)
                      +|++|++++|++. ..+. ++.+++|+.|++++|.++....    +..+++|++|++++|.+.+.++     +..+++|+
T Consensus       130 ~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~  198 (308)
T 1h6u_A          130 NLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLTP----LANLSKLTTLKADDNKISDISP-----LASLPNLI  198 (308)
T ss_dssp             TCCEEECCSSCCC-CCGG-GGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCCGG-----GGGCTTCC
T ss_pred             CCCEEECCCCccC-cCcc-ccCCCCccEEEccCCcCCCChh----hcCCCCCCEEECCCCccCcChh-----hcCCCCCC
Confidence            7777777777665 2332 5566677777777766632221    5566667777777766664432     45566666


Q ss_pred             EeeCcCC
Q 038633          169 ELRLPNC  175 (176)
Q Consensus       169 ~L~l~~n  175 (176)
                      +|++++|
T Consensus       199 ~L~L~~N  205 (308)
T 1h6u_A          199 EVHLKNN  205 (308)
T ss_dssp             EEECTTS
T ss_pred             EEEccCC
Confidence            6666665

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.82  E-value=3.1e-19  Score=132.36  Aligned_cols=159  Identities=19%  Similarity=0.135  Sum_probs=103.1

Q ss_pred             cccccccceeeccCccccCCCCcCcccCCcceEeec---------------------CCCCccccchhhhcCCCCCcEEE
Q 038633           11 LHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDD---------------------AGHELGGPISPSLLQLKDLKYLD   69 (176)
Q Consensus        11 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l---------------------~~n~l~~~~~~~l~~l~~L~~L~   69 (176)
                      +..+++|+.|++++|.+.+..+..+..+.+|++|++                     ++|.+++..+..+..+++|++|+
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  151 (330)
T 1xku_A           72 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE  151 (330)
T ss_dssp             TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEE
T ss_pred             hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEE
Confidence            344455555555555554444444444444444444                     44444444445567777777777


Q ss_pred             ccCccccC--CcchhhhcCcCCcc---------------------EEEeecccCCCCcchhccCCCCCCEEEccCCccCc
Q 038633           70 LSMNNFKG--FKVPEFIGSLKELR---------------------YLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQS  126 (176)
Q Consensus        70 l~~~~~~~--~~~p~~~~~l~~L~---------------------~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~  126 (176)
                      +++|.+..  . .+..+..+++|+                     +|++++|++.+..|..+..+++|+.|++++|.++.
T Consensus       152 l~~n~l~~~~~-~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  230 (330)
T 1xku_A          152 LGTNPLKSSGI-ENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA  230 (330)
T ss_dssp             CCSSCCCGGGB-CTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE
T ss_pred             CCCCcCCccCc-ChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce
Confidence            77777642  2 344455555554                     45555555553445678888999999999998843


Q ss_pred             ccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633          127 NQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN  176 (176)
Q Consensus       127 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~  176 (176)
                        .....+..+++|++|++++|.+...+.    .+..+++|++|++++|+
T Consensus       231 --~~~~~~~~l~~L~~L~L~~N~l~~lp~----~l~~l~~L~~L~l~~N~  274 (330)
T 1xku_A          231 --VDNGSLANTPHLRELHLNNNKLVKVPG----GLADHKYIQVVYLHNNN  274 (330)
T ss_dssp             --ECTTTGGGSTTCCEEECCSSCCSSCCT----TTTTCSSCCEEECCSSC
T ss_pred             --eChhhccCCCCCCEEECCCCcCccCCh----hhccCCCcCEEECCCCc
Confidence              333457889999999999999985543    67889999999999984

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.82  E-value=2e-19  Score=126.41  Aligned_cols=137  Identities=14%  Similarity=0.026  Sum_probs=120.1

Q ss_pred             ccccceeeccCccccCCCC-cCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccE
Q 038633           14 LSRIFALSLLRCCSVGSAL-AQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRY   92 (176)
Q Consensus        14 ~~~l~~l~l~~~~~~~~~~-~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~   92 (176)
                      .+.++.|++++|.+.+..+ ..+..+.+|++|++++|.+++..+..|..+++|++|++++|.+... .+..+..+++|++
T Consensus        31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~  109 (220)
T 2v70_A           31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV-QHKMFKGLESLKT  109 (220)
T ss_dssp             CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CGGGGTTCSSCCE
T ss_pred             CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCcc-CHhHhcCCcCCCE
Confidence            4567899999999987754 3468899999999999999988888999999999999999999976 6777999999999


Q ss_pred             EEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCc
Q 038633           93 LNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKD  153 (176)
Q Consensus        93 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  153 (176)
                      |++++|++.+..|..+..+++|+.|++++|.++.  ..+..+..+++|++|++++|.+...
T Consensus       110 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A          110 LMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT--VAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             EECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCC--BCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             EECCCCcCCeECHhHcCCCccCCEEECCCCcCCE--ECHHHhcCCCCCCEEEecCcCCcCC
Confidence            9999999997778889999999999999999943  4345688999999999999998754

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.82  E-value=4.3e-20  Score=145.68  Aligned_cols=159  Identities=21%  Similarity=0.200  Sum_probs=116.6

Q ss_pred             cccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccch-hhhcCCCCCcEEEccCccccCCcchhhhcCcCC
Q 038633           11 LHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPIS-PSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKE   89 (176)
Q Consensus        11 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~   89 (176)
                      +..+++++.|++++|.+.+..+. +..+.+|++|++++|.+++..+ ..+..+++|++|++++|.+... .|..+..+++
T Consensus       369 ~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~  446 (570)
T 2z63_A          369 DFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-FNGIFNGLSS  446 (570)
T ss_dssp             HHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEEC-CTTTTTTCTT
T ss_pred             ccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccccc-chhhhhcCCc
Confidence            34556677777777666554333 5667777778887777765544 4567778888888888887765 6777777888


Q ss_pred             ccEEEeecccCC-CCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCc
Q 038633           90 LRYLNLSGSFFS-GTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLV  168 (176)
Q Consensus        90 L~~L~l~~~~~~-~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~  168 (176)
                      |++|++++|.+. +..|..+..+++|+.|++++|++.  ...+..+..+++|++|++++|.+.+.++.   .++.+++|+
T Consensus       447 L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~  521 (570)
T 2z63_A          447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE--QLSPTAFNSLSSLQVLNMASNQLKSVPDG---IFDRLTSLQ  521 (570)
T ss_dssp             CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCC
T ss_pred             CcEEECcCCcCccccchhhhhcccCCCEEECCCCccc--cCChhhhhcccCCCEEeCCCCcCCCCCHH---HhhcccCCc
Confidence            888888888875 356777778888888888888773  33344577888888888888888877665   677788888


Q ss_pred             EeeCcCCC
Q 038633          169 ELRLPNCN  176 (176)
Q Consensus       169 ~L~l~~n~  176 (176)
                      .|++++|.
T Consensus       522 ~L~l~~N~  529 (570)
T 2z63_A          522 KIWLHTNP  529 (570)
T ss_dssp             EEECCSSC
T ss_pred             EEEecCCc
Confidence            88888874

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.82  E-value=1.6e-19  Score=135.65  Aligned_cols=162  Identities=20%  Similarity=0.112  Sum_probs=127.1

Q ss_pred             ccccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhc-CCCCCcEEEccCccccCCcchhhhcC
Q 038633            8 LSDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLL-QLKDLKYLDLSMNNFKGFKVPEFIGS   86 (176)
Q Consensus         8 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~p~~~~~   86 (176)
                      ++.-..|. -+.++++++.+... |..  ....++.|++++|.+++..+..+. .+++|++|++++|.+... .+..+..
T Consensus        12 Cp~~C~C~-~~~l~c~~~~l~~i-P~~--~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~   86 (361)
T 2xot_A           12 CPANCLCA-SNILSCSKQQLPNV-PQS--LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI-SSEAFVP   86 (361)
T ss_dssp             CCTTCEEE-TTEEECCSSCCSSC-CSS--CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEE-CTTTTTT
T ss_pred             CCCCCEEC-CCEEEeCCCCcCcc-Ccc--CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCcc-ChhhccC
Confidence            44333443 25788888777654 332  234588999999999987777787 999999999999999965 6678999


Q ss_pred             cCCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhcccc
Q 038633           87 LKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRS  166 (176)
Q Consensus        87 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~  166 (176)
                      +++|++|++++|++....+..+..+++|+.|++++|.+.  ......+..+++|++|+|++|.+...++..+..+..+++
T Consensus        87 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~--~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~  164 (361)
T 2xot_A           87 VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV--VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPK  164 (361)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTT
T ss_pred             CCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCccc--EECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCc
Confidence            999999999999998555567889999999999999994  344456899999999999999999877652222267899


Q ss_pred             CcEeeCcCCC
Q 038633          167 LVELRLPNCN  176 (176)
Q Consensus       167 L~~L~l~~n~  176 (176)
                      |+.|++++|+
T Consensus       165 L~~L~L~~N~  174 (361)
T 2xot_A          165 LMLLDLSSNK  174 (361)
T ss_dssp             CCEEECCSSC
T ss_pred             CCEEECCCCC
Confidence            9999999984

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.82  E-value=2.3e-19  Score=140.34  Aligned_cols=156  Identities=21%  Similarity=0.094  Sum_probs=125.4

Q ss_pred             ccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccc--cchhhhcCCCCCcEEEccCccccCCcchhh-hcCcC
Q 038633           12 HLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGG--PISPSLLQLKDLKYLDLSMNNFKGFKVPEF-IGSLK   88 (176)
Q Consensus        12 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~-~~~l~   88 (176)
                      ..+++++.|++++|.+.+..+..+..+.+|++|++++|.+++  .+|..+..+++|++|++++|.+... +|.. +..++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~-l~~~~~~~l~  399 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD-EKKGDCSWTK  399 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCC-GGGCSCCCCT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcc-cccchhccCc
Confidence            467888899999998888777777888889999999998876  5667788899999999999998863 6654 67788


Q ss_pred             CccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCc
Q 038633           89 ELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLV  168 (176)
Q Consensus        89 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~  168 (176)
                      +|++|++++|++.+..|..+.  ++|+.|++++|+++..   +..+..+++|++|++++|.+...++.   .+..+++|+
T Consensus       400 ~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~i---p~~~~~l~~L~~L~L~~N~l~~l~~~---~~~~l~~L~  471 (520)
T 2z7x_B          400 SLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSI---PKQVVKLEALQELNVASNQLKSVPDG---IFDRLTSLQ  471 (520)
T ss_dssp             TCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCC---CGGGGGCTTCCEEECCSSCCCCCCTT---TTTTCTTCC
T ss_pred             cCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccccc---chhhhcCCCCCEEECCCCcCCccCHH---HhccCCccc
Confidence            999999999988766665543  6899999999988532   22355889999999999999866553   477889999


Q ss_pred             EeeCcCCC
Q 038633          169 ELRLPNCN  176 (176)
Q Consensus       169 ~L~l~~n~  176 (176)
                      +|++++|.
T Consensus       472 ~L~l~~N~  479 (520)
T 2z7x_B          472 KIWLHTNP  479 (520)
T ss_dssp             EEECCSSC
T ss_pred             EEECcCCC
Confidence            99999884

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.82  E-value=6.6e-20  Score=150.99  Aligned_cols=160  Identities=19%  Similarity=0.052  Sum_probs=127.9

Q ss_pred             cccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccc-hhhhcCCCCCcEEEccCccccCCcchhhhcCcCCcc
Q 038633           13 LLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPI-SPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELR   91 (176)
Q Consensus        13 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~   91 (176)
                      ..++++.|++++|.+.+..+..+..+.+|++|++++|...+.+ |..|.++++|++|++++|.+... .|..+..+++|+
T Consensus        22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~  100 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL-HPDAFQGLFHLF  100 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE-CTTSSCSCSSCC
T ss_pred             CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc-CHhHccCCcccC
Confidence            5578999999999998888888999999999999999655555 78899999999999999999976 788999999999


Q ss_pred             EEEeecccCCCCcchh--ccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcE
Q 038633           92 YLNLSGSFFSGTIPQS--LGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVE  169 (176)
Q Consensus        92 ~L~l~~~~~~~~~p~~--~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~  169 (176)
                      +|++++|.+.+..|..  ++.+++|++|++++|.+.... ....+..+++|++|++++|.+.+..+..+..+.. ++|+.
T Consensus       101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~-~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~-~~L~~  178 (844)
T 3j0a_A          101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY-LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG-KTLSF  178 (844)
T ss_dssp             CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC-CCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH-CSSCC
T ss_pred             EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccc-cchhHhhCCCCCEEECCCCcCCeeCHHHcccccC-Cccce
Confidence            9999999998656654  889999999999999884322 2234789999999999999998776652222211 45555


Q ss_pred             eeCcCC
Q 038633          170 LRLPNC  175 (176)
Q Consensus       170 L~l~~n  175 (176)
                      |++++|
T Consensus       179 L~L~~n  184 (844)
T 3j0a_A          179 FSLAAN  184 (844)
T ss_dssp             CEECCS
T ss_pred             EECCCC
Confidence            555544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.82  E-value=1.6e-20  Score=150.51  Aligned_cols=159  Identities=12%  Similarity=0.055  Sum_probs=126.8

Q ss_pred             cccccccccceeeccCccccCC-----------------CCcCcc--cCCcceEeecCCCCccccchhhhcCCCCCcEEE
Q 038633            9 SDLHLLSRIFALSLLRCCSVGS-----------------ALAQPF--RDSFDTYEDDAGHELGGPISPSLLQLKDLKYLD   69 (176)
Q Consensus         9 ~~~~~~~~l~~l~l~~~~~~~~-----------------~~~~~~--~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~   69 (176)
                      ..+..+++|+.|++++|.+.+.                 .|....  .+.+|++|++++|.+.+.+|..+.++++|++|+
T Consensus       200 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  279 (636)
T 4eco_A          200 KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN  279 (636)
T ss_dssp             GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEE
T ss_pred             HHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEE
Confidence            3477789999999999998874                 677777  889999999999999899999999999999999


Q ss_pred             ccCcc-ccC-CcchhhhcCc------CCccEEEeecccCCCCcch--hccCCCCCCEEEccCCccCcccccccccCCCCC
Q 038633           70 LSMNN-FKG-FKVPEFIGSL------KELRYLNLSGSFFSGTIPQ--SLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPS  139 (176)
Q Consensus        70 l~~~~-~~~-~~~p~~~~~l------~~L~~L~l~~~~~~~~~p~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~  139 (176)
                      +++|. +++ . +|..++.+      ++|++|++++|++. .+|.  .++.+++|+.|++++|.+.  ...+ .+..+++
T Consensus       280 Ls~n~~l~~~~-lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~--g~ip-~~~~l~~  354 (636)
T 4eco_A          280 VACNRGISGEQ-LKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLE--GKLP-AFGSEIK  354 (636)
T ss_dssp             CTTCTTSCHHH-HHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCE--EECC-CCEEEEE
T ss_pred             CcCCCCCcccc-chHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCc--cchh-hhCCCCC
Confidence            99998 876 5 88888776      89999999999998 8888  8889999999999999884  1222 4666777


Q ss_pred             ccEEeccCCCCCCchhhhHHHhhcccc-CcEeeCcCCC
Q 038633          140 LKYLNLGGADLSKDAAYWLESISMLRS-LVELRLPNCN  176 (176)
Q Consensus       140 L~~L~l~~n~l~~~~~~~~~~l~~~~~-L~~L~l~~n~  176 (176)
                      |++|++++|.+. ..|.   .++.+++ |++|++++|+
T Consensus       355 L~~L~L~~N~l~-~lp~---~l~~l~~~L~~L~Ls~N~  388 (636)
T 4eco_A          355 LASLNLAYNQIT-EIPA---NFCGFTEQVENLSFAHNK  388 (636)
T ss_dssp             ESEEECCSSEEE-ECCT---TSEEECTTCCEEECCSSC
T ss_pred             CCEEECCCCccc-cccH---hhhhhcccCcEEEccCCc
Confidence            777777777776 3333   5666666 7777777663

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.82  E-value=6.2e-20  Score=130.38  Aligned_cols=131  Identities=14%  Similarity=0.075  Sum_probs=104.9

Q ss_pred             CCcceEeecCCCCccccchhhhcCCCCCcEEEccCcc-ccCCcchhhhcCcCCccEEEeec-ccCCCCcchhccCCCCCC
Q 038633           38 DSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNN-FKGFKVPEFIGSLKELRYLNLSG-SFFSGTIPQSLGNLTNLL  115 (176)
Q Consensus        38 ~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~p~~~~~l~~L~~L~l~~-~~~~~~~p~~~~~l~~L~  115 (176)
                      ...+++|++++|.+++..+..|..+++|++|++++|. +... .+..+..+++|++|++++ |++....+..+..+++|+
T Consensus        30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~  108 (239)
T 2xwt_C           30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK  108 (239)
T ss_dssp             CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred             CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence            3489999999999988777789999999999999997 8754 555788999999999998 999844446788999999


Q ss_pred             EEEccCCccCcccccccccCCCCCcc---EEeccCC-CCCCchhhhHHHhhccccCc-EeeCcCCC
Q 038633          116 YLDLNNFLDQSNQIGLGWLSGLPSLK---YLNLGGA-DLSKDAAYWLESISMLRSLV-ELRLPNCN  176 (176)
Q Consensus       116 ~L~l~~n~~~~~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~l~~~~~L~-~L~l~~n~  176 (176)
                      .|++++|+++..+.    +..+++|+   +|++++| .+.+.++.   .++.+++|+ +|++++|+
T Consensus       109 ~L~l~~n~l~~lp~----~~~l~~L~~L~~L~l~~N~~l~~i~~~---~~~~l~~L~~~L~l~~n~  167 (239)
T 2xwt_C          109 FLGIFNTGLKMFPD----LTKVYSTDIFFILEITDNPYMTSIPVN---AFQGLCNETLTLKLYNNG  167 (239)
T ss_dssp             EEEEEEECCCSCCC----CTTCCBCCSEEEEEEESCTTCCEECTT---TTTTTBSSEEEEECCSCC
T ss_pred             EEeCCCCCCccccc----cccccccccccEEECCCCcchhhcCcc---cccchhcceeEEEcCCCC
Confidence            99999998854322    56666666   8888888 77666554   566777888 88877763

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.82  E-value=1.6e-19  Score=145.40  Aligned_cols=161  Identities=19%  Similarity=0.029  Sum_probs=130.7

Q ss_pred             ccccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCc
Q 038633            8 LSDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSL   87 (176)
Q Consensus         8 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l   87 (176)
                      ...+..+++++.|++++|.+.+..+..+..+.+|++|++++|.+++..+..|.++++|++|++++|.+... .|..+..+
T Consensus        42 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l  120 (680)
T 1ziw_A           42 AANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI-KNNPFVKQ  120 (680)
T ss_dssp             GGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CSCTTTTC
T ss_pred             HHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCcc-ChhHcccc
Confidence            34577889999999999999888787788999999999999999876666799999999999999999865 66789999


Q ss_pred             CCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccC
Q 038633           88 KELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSL  167 (176)
Q Consensus        88 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L  167 (176)
                      ++|++|++++|.+.+..|..++.+++|+.|++++|.++...........+++|++|++++|.+.+.++.   .++.++.|
T Consensus       121 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~---~~~~l~~L  197 (680)
T 1ziw_A          121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG---CFHAIGRL  197 (680)
T ss_dssp             TTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTT---GGGGSSEE
T ss_pred             CCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChh---hhhhhhhh
Confidence            999999999999987777888899999999999998843322111133568999999999999887765   44444444


Q ss_pred             cEeeC
Q 038633          168 VELRL  172 (176)
Q Consensus       168 ~~L~l  172 (176)
                      +.+++
T Consensus       198 ~~L~l  202 (680)
T 1ziw_A          198 FGLFL  202 (680)
T ss_dssp             CEEEC
T ss_pred             hhhhc
Confidence            33333

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.81  E-value=4.6e-19  Score=131.59  Aligned_cols=156  Identities=21%  Similarity=0.190  Sum_probs=91.0

Q ss_pred             cccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccC--CcchhhhcCc-
Q 038633           11 LHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKG--FKVPEFIGSL-   87 (176)
Q Consensus        11 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~p~~~~~l-   87 (176)
                      +..+++|+.|++++|.+.......+   .+|++|++++|.+++..+..+..+++|++|++++|.+..  . .|..+..+ 
T Consensus        98 ~~~l~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~l~  173 (332)
T 2ft3_A           98 FSPLRKLQKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF-EPGAFDGLK  173 (332)
T ss_dssp             STTCTTCCEEECCSSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGS-CTTSSCSCC
T ss_pred             hhCcCCCCEEECCCCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCC-CcccccCCc
Confidence            3344444555554444432211111   345555555555544444456666777777777666642  1 22222222 


Q ss_pred             -------------------CCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCC
Q 038633           88 -------------------KELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGA  148 (176)
Q Consensus        88 -------------------~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n  148 (176)
                                         ++|++|++++|.+.+..+..+..+++|+.|++++|.+..  .....+..+++|++|++++|
T Consensus       174 L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N  251 (332)
T 2ft3_A          174 LNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM--IENGSLSFLPTLRELHLDNN  251 (332)
T ss_dssp             CSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC--CCTTGGGGCTTCCEEECCSS
T ss_pred             cCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc--CChhHhhCCCCCCEEECCCC
Confidence                               345555556666654444567777888888888887733  33334677888888888888


Q ss_pred             CCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633          149 DLSKDAAYWLESISMLRSLVELRLPNCN  176 (176)
Q Consensus       149 ~l~~~~~~~~~~l~~~~~L~~L~l~~n~  176 (176)
                      .+... |.   .+..+++|+.|++++|+
T Consensus       252 ~l~~l-p~---~l~~l~~L~~L~l~~N~  275 (332)
T 2ft3_A          252 KLSRV-PA---GLPDLKLLQVVYLHTNN  275 (332)
T ss_dssp             CCCBC-CT---TGGGCTTCCEEECCSSC
T ss_pred             cCeec-Ch---hhhcCccCCEEECCCCC
Confidence            88744 33   56778888888888774

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.81  E-value=8.2e-20  Score=150.19  Aligned_cols=158  Identities=11%  Similarity=0.050  Sum_probs=135.2

Q ss_pred             cccccccccceeeccCccccCC-----------------CCcCcc--cCCcceEeecCCCCccccchhhhcCCCCCcEEE
Q 038633            9 SDLHLLSRIFALSLLRCCSVGS-----------------ALAQPF--RDSFDTYEDDAGHELGGPISPSLLQLKDLKYLD   69 (176)
Q Consensus         9 ~~~~~~~~l~~l~l~~~~~~~~-----------------~~~~~~--~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~   69 (176)
                      ..+..+++|+.|++++|.+.+.                 .|....  .+.+|++|++++|.+.+.+|..+.++++|++|+
T Consensus       442 ~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~  521 (876)
T 4ecn_A          442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLN  521 (876)
T ss_dssp             GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEE
T ss_pred             HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEE
Confidence            3577889999999999998872                 666655  899999999999999999999999999999999


Q ss_pred             ccCcc-ccC-CcchhhhcCcC-------CccEEEeecccCCCCcch--hccCCCCCCEEEccCCccCcccccccccCCCC
Q 038633           70 LSMNN-FKG-FKVPEFIGSLK-------ELRYLNLSGSFFSGTIPQ--SLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLP  138 (176)
Q Consensus        70 l~~~~-~~~-~~~p~~~~~l~-------~L~~L~l~~~~~~~~~p~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~  138 (176)
                      +++|. +++ . +|..++.++       +|++|++++|++. .+|.  .++.+++|+.|++++|.+...+    .+..++
T Consensus       522 Ls~N~~lsg~~-iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp----~~~~L~  595 (876)
T 4ecn_A          522 IACNRGISAAQ-LKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE----AFGTNV  595 (876)
T ss_dssp             CTTCTTSCHHH-HHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC----CCCTTS
T ss_pred             CcCCCCccccc-chHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch----hhcCCC
Confidence            99998 886 5 887777665       9999999999998 8888  8999999999999999985222    588899


Q ss_pred             CccEEeccCCCCCCchhhhHHHhhcccc-CcEeeCcCCC
Q 038633          139 SLKYLNLGGADLSKDAAYWLESISMLRS-LVELRLPNCN  176 (176)
Q Consensus       139 ~L~~L~l~~n~l~~~~~~~~~~l~~~~~-L~~L~l~~n~  176 (176)
                      +|++|++++|.+. ..|.   .+..+++ |+.|++++|+
T Consensus       596 ~L~~L~Ls~N~l~-~lp~---~l~~l~~~L~~L~Ls~N~  630 (876)
T 4ecn_A          596 KLTDLKLDYNQIE-EIPE---DFCAFTDQVEGLGFSHNK  630 (876)
T ss_dssp             EESEEECCSSCCS-CCCT---TSCEECTTCCEEECCSSC
T ss_pred             cceEEECcCCccc-cchH---HHhhccccCCEEECcCCC
Confidence            9999999999998 4444   6778888 9999998874

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.81  E-value=3.2e-20  Score=152.60  Aligned_cols=167  Identities=17%  Similarity=0.087  Sum_probs=113.4

Q ss_pred             eeecccccccccccceeeccCccccCCCCcCcccCCcceEeec-CCCCcccc----------------------------
Q 038633            4 FVFALSDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDD-AGHELGGP----------------------------   54 (176)
Q Consensus         4 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l-~~n~l~~~----------------------------   54 (176)
                      .++.|..   ...++.|+|+++.+.+..+.....++.|++|++ ++|.+.+.                            
T Consensus       315 ~GV~C~~---~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~  391 (876)
T 4ecn_A          315 PGVDLDN---NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMF  391 (876)
T ss_dssp             TTEEECT---TSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHH
T ss_pred             CceEecC---CCCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhh
Confidence            4444433   256778888888887777777788888888888 55543322                            


Q ss_pred             ------------------------------------------------chhhhcCCCCCcEEEccCccccC---------
Q 038633           55 ------------------------------------------------ISPSLLQLKDLKYLDLSMNNFKG---------   77 (176)
Q Consensus        55 ------------------------------------------------~~~~l~~l~~L~~L~l~~~~~~~---------   77 (176)
                                                                      +|..+.++++|++|++++|.+++         
T Consensus       392 l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~  471 (876)
T 4ecn_A          392 LDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWED  471 (876)
T ss_dssp             TCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC
T ss_pred             hccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccc
Confidence                                                            67777888888888888888875         


Q ss_pred             --------Ccchhhhc--CcCCccEEEeecccCCCCcchhccCCCCCCEEEccCCc-cCc--ccccc----cccCCCCCc
Q 038633           78 --------FKVPEFIG--SLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFL-DQS--NQIGL----GWLSGLPSL  140 (176)
Q Consensus        78 --------~~~p~~~~--~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~-~~~--~~~~~----~~~~~l~~L  140 (176)
                              . +|..++  .+++|++|++++|.+.+.+|..++.+++|+.|++++|+ ++.  .+...    ..+..+++|
T Consensus       472 ~s~n~~~g~-iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L  550 (876)
T 4ecn_A          472 ANSDYAKQY-ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI  550 (876)
T ss_dssp             TTSHHHHHH-TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTC
T ss_pred             ccccccccc-CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCc
Confidence                    2 677766  78888888888888777788778888888888888887 531  11100    023445577


Q ss_pred             cEEeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633          141 KYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN  176 (176)
Q Consensus       141 ~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~  176 (176)
                      ++|++++|.+...+.  ...++.+++|++|++++|+
T Consensus       551 ~~L~Ls~N~L~~ip~--~~~l~~L~~L~~L~Ls~N~  584 (876)
T 4ecn_A          551 QIFYMGYNNLEEFPA--SASLQKMVKLGLLDCVHNK  584 (876)
T ss_dssp             CEEECCSSCCCBCCC--HHHHTTCTTCCEEECTTSC
T ss_pred             cEEEeeCCcCCccCC--hhhhhcCCCCCEEECCCCC
Confidence            777777777763332  0145667777777777663

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.81  E-value=8.4e-19  Score=128.14  Aligned_cols=148  Identities=23%  Similarity=0.168  Sum_probs=83.6

Q ss_pred             ccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCC
Q 038633           10 DLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKE   89 (176)
Q Consensus        10 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~   89 (176)
                      .+..+++++.|++++|.+.+..+  ...+.+|++|++++|.+++ . ..+..+++|++|++++|.+..  + +.+..+++
T Consensus        63 ~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~~--~-~~l~~l~~  135 (291)
T 1h6t_A           63 GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLEHNGISD--I-NGLVHLPQ  135 (291)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEECTTSCCCC--C-GGGGGCTT
T ss_pred             hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEECCCCcCCC--C-hhhcCCCC
Confidence            34445556666666655554332  4555566666666666543 2 235566666666666666552  2 34555666


Q ss_pred             ccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcE
Q 038633           90 LRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVE  169 (176)
Q Consensus        90 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~  169 (176)
                      |++|++++|++.+ . ..+..+++|+.|++++|.+.....    +..+++|++|++++|.+.+. +    .+..+++|+.
T Consensus       136 L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~~~~~----l~~l~~L~~L~L~~N~i~~l-~----~l~~l~~L~~  204 (291)
T 1h6t_A          136 LESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNHISDL-R----ALAGLKNLDV  204 (291)
T ss_dssp             CCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCBC-G----GGTTCTTCSE
T ss_pred             CCEEEccCCcCCc-c-hhhccCCCCCEEEccCCccccchh----hcCCCccCEEECCCCcCCCC-h----hhccCCCCCE
Confidence            6666666666652 2 345566666666666666532211    55666666666666666543 2    3455666666


Q ss_pred             eeCcCC
Q 038633          170 LRLPNC  175 (176)
Q Consensus       170 L~l~~n  175 (176)
                      |++++|
T Consensus       205 L~l~~n  210 (291)
T 1h6t_A          205 LELFSQ  210 (291)
T ss_dssp             EEEEEE
T ss_pred             EECcCC
Confidence            666655

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.81  E-value=4.1e-19  Score=141.34  Aligned_cols=132  Identities=22%  Similarity=0.092  Sum_probs=114.2

Q ss_pred             CcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEE
Q 038633           39 SFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLD  118 (176)
Q Consensus        39 ~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~  118 (176)
                      ..+++|+|++|.|++..+..|.++++|++|++++|.+... .|.+|..+++|++|++++|++....+..|+++++|++|+
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  130 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence            5789999999999988888999999999999999999965 667899999999999999999844446789999999999


Q ss_pred             ccCCccCcccccccccCCCCCccEEeccCCCCCCch-hhhHHHhhccccCcEeeCcCCC
Q 038633          119 LNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDA-AYWLESISMLRSLVELRLPNCN  176 (176)
Q Consensus       119 l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~~~~L~~L~l~~n~  176 (176)
                      +++|.++.  .....+.++++|++|++++|.+.... +.   .++.++.|++|++++|+
T Consensus       131 Ls~N~l~~--l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~---~~~~l~~L~~L~L~~N~  184 (635)
T 4g8a_A          131 AVETNLAS--LENFPIGHLKTLKELNVAHNLIQSFKLPE---YFSNLTNLEHLDLSSNK  184 (635)
T ss_dssp             CTTSCCCC--STTCCCTTCTTCCEEECCSSCCCCCCCCG---GGGGCTTCCEEECCSSC
T ss_pred             CCCCcCCC--CChhhhhcCcccCeeccccCccccCCCch---hhccchhhhhhcccCcc
Confidence            99999843  33345889999999999999997643 44   67889999999999984

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.81  E-value=1.2e-18  Score=127.42  Aligned_cols=149  Identities=25%  Similarity=0.145  Sum_probs=126.6

Q ss_pred             ccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCC
Q 038633           10 DLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKE   89 (176)
Q Consensus        10 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~   89 (176)
                      +...+++++.|++++|.+...  .....+.+|++|++++|.+++..+  +..+++|++|++++|.+..  +| .+..+++
T Consensus        41 ~~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~--~~-~l~~l~~  113 (291)
T 1h6t_A           41 TQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD--LS-SLKDLKK  113 (291)
T ss_dssp             CHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC--GG-GGTTCTT
T ss_pred             chhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC--Ch-hhccCCC
Confidence            445678999999999988765  346778999999999999986544  8899999999999999983  43 4889999


Q ss_pred             ccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcE
Q 038633           90 LRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVE  169 (176)
Q Consensus        90 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~  169 (176)
                      |++|++++|++.+ . +.+..+++|+.|++++|.++..    ..+..+++|++|++++|.+.+.++     +..+++|++
T Consensus       114 L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~L~~N~l~~~~~-----l~~l~~L~~  182 (291)
T 1h6t_A          114 LKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI----TVLSRLTKLDTLSLEDNQISDIVP-----LAGLTKLQN  182 (291)
T ss_dssp             CCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSCCCCCGG-----GTTCTTCCE
T ss_pred             CCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc----hhhccCCCCCEEEccCCccccchh-----hcCCCccCE
Confidence            9999999999974 3 4688899999999999998543    347899999999999999987653     678999999


Q ss_pred             eeCcCCC
Q 038633          170 LRLPNCN  176 (176)
Q Consensus       170 L~l~~n~  176 (176)
                      |++++|+
T Consensus       183 L~L~~N~  189 (291)
T 1h6t_A          183 LYLSKNH  189 (291)
T ss_dssp             EECCSSC
T ss_pred             EECCCCc
Confidence            9999984

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.80  E-value=3.9e-19  Score=128.18  Aligned_cols=148  Identities=20%  Similarity=0.106  Sum_probs=122.8

Q ss_pred             cccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcC
Q 038633            9 SDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLK   88 (176)
Q Consensus         9 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~   88 (176)
                      ..+..+++++.|++++|.+....  ....+.+|++|++++|.+++..+  +..+++|++|++++|.+..  +|... . +
T Consensus        35 ~~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~--l~~~~-~-~  106 (263)
T 1xeu_A           35 VSQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN--LNGIP-S-A  106 (263)
T ss_dssp             ECHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC--CTTCC-C-S
T ss_pred             cchhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC--cCccc-c-C
Confidence            35667889999999999887643  56788999999999999976544  8899999999999999984  44433 3 8


Q ss_pred             CccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCc
Q 038633           89 ELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLV  168 (176)
Q Consensus        89 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~  168 (176)
                      +|++|++++|++. ..+ .+..+++|+.|++++|+++...    .+..+++|++|++++|.+.+. .    .+..+++|+
T Consensus       107 ~L~~L~L~~N~l~-~~~-~l~~l~~L~~L~Ls~N~i~~~~----~l~~l~~L~~L~L~~N~i~~~-~----~l~~l~~L~  175 (263)
T 1xeu_A          107 CLSRLFLDNNELR-DTD-SLIHLKNLEILSIRNNKLKSIV----MLGFLSKLEVLDLHGNEITNT-G----GLTRLKKVN  175 (263)
T ss_dssp             SCCEEECCSSCCS-BSG-GGTTCTTCCEEECTTSCCCBCG----GGGGCTTCCEEECTTSCCCBC-T----TSTTCCCCC
T ss_pred             cccEEEccCCccC-CCh-hhcCcccccEEECCCCcCCCCh----HHccCCCCCEEECCCCcCcch-H----HhccCCCCC
Confidence            9999999999997 444 5889999999999999985432    378899999999999999876 2    678899999


Q ss_pred             EeeCcCC
Q 038633          169 ELRLPNC  175 (176)
Q Consensus       169 ~L~l~~n  175 (176)
                      .|++++|
T Consensus       176 ~L~l~~N  182 (263)
T 1xeu_A          176 WIDLTGQ  182 (263)
T ss_dssp             EEEEEEE
T ss_pred             EEeCCCC
Confidence            9999887

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.80  E-value=5.5e-20  Score=135.59  Aligned_cols=158  Identities=18%  Similarity=0.134  Sum_probs=122.8

Q ss_pred             cceeeccCccccC-CCCcCcc-------cCCcceEeecCCCCccccchhhh--cCCCCCcEEEccCccccCCcchhhhcC
Q 038633           17 IFALSLLRCCSVG-SALAQPF-------RDSFDTYEDDAGHELGGPISPSL--LQLKDLKYLDLSMNNFKGFKVPEFIGS   86 (176)
Q Consensus        17 l~~l~l~~~~~~~-~~~~~~~-------~~~~l~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~p~~~~~   86 (176)
                      ++.|++++|.+.. ..+....       .+.+|++|++++|.+++..|..+  ..+++|++|++++|.+.+  .|..+..
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~  142 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT--RDAWLAE  142 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSS--SSSHHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcc--hhHHHHH
Confidence            6677777777743 2222222       57899999999999998888876  899999999999999994  4666666


Q ss_pred             c-----CCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCccccccc--ccCCCCCccEEeccCCCCCCchhhhHH
Q 038633           87 L-----KELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLG--WLSGLPSLKYLNLGGADLSKDAAYWLE  159 (176)
Q Consensus        87 l-----~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~  159 (176)
                      +     ++|++|++++|++.+..|..++.+++|+.|++++|++........  .+..+++|++|++++|.+.+.+.....
T Consensus       143 l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  222 (312)
T 1wwl_A          143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA  222 (312)
T ss_dssp             HHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH
T ss_pred             HHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHH
Confidence            6     899999999999986666889999999999999998632111111  237899999999999999854332223


Q ss_pred             HhhccccCcEeeCcCCC
Q 038633          160 SISMLRSLVELRLPNCN  176 (176)
Q Consensus       160 ~l~~~~~L~~L~l~~n~  176 (176)
                      .+..+++|++|++++|+
T Consensus       223 ~~~~l~~L~~L~Ls~N~  239 (312)
T 1wwl_A          223 LAAARVQLQGLDLSHNS  239 (312)
T ss_dssp             HHHTTCCCSEEECTTSC
T ss_pred             HHhcCCCCCEEECCCCc
Confidence            45678999999999984

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.80  E-value=5e-19  Score=137.81  Aligned_cols=103  Identities=17%  Similarity=0.083  Sum_probs=64.0

Q ss_pred             CcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhcc-CCCCCCEEEccCCccCcccccccccCCCCCccEE
Q 038633           65 LKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLG-NLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYL  143 (176)
Q Consensus        65 L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L  143 (176)
                      |++|++++|.+.+. .|..+..+++|++|++++|.+.+..|..+. .+++|+.|++++|.++..+.    ...+++|++|
T Consensus       122 L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~----~~~l~~L~~L  196 (487)
T 3oja_A          122 KKNIYLANNKITML-RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG----QVVFAKLKTL  196 (487)
T ss_dssp             CEEEECCSSCCCSG-GGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC----CCCCTTCCEE
T ss_pred             CCEEECCCCCCCCC-CchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc----cccCCCCCEE
Confidence            34444444444433 455566677777777777777655555554 56777777777777643321    3356777777


Q ss_pred             eccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633          144 NLGGADLSKDAAYWLESISMLRSLVELRLPNCN  176 (176)
Q Consensus       144 ~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~  176 (176)
                      ++++|.+.+.++    .+..+++|+.|++++|+
T Consensus       197 ~Ls~N~l~~~~~----~~~~l~~L~~L~Ls~N~  225 (487)
T 3oja_A          197 DLSSNKLAFMGP----EFQSAAGVTWISLRNNK  225 (487)
T ss_dssp             ECCSSCCCEECG----GGGGGTTCSEEECTTSC
T ss_pred             ECCCCCCCCCCH----hHcCCCCccEEEecCCc
Confidence            777777776554    45566777777777663

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.80  E-value=9.2e-19  Score=138.32  Aligned_cols=156  Identities=19%  Similarity=0.109  Sum_probs=125.2

Q ss_pred             ccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccc--cchhhhcCCCCCcEEEccCccccCCcchh-hhcCcC
Q 038633           12 HLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGG--PISPSLLQLKDLKYLDLSMNNFKGFKVPE-FIGSLK   88 (176)
Q Consensus        12 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~p~-~~~~l~   88 (176)
                      ..+++++.|++++|.+.+..+..+..+++|++|++++|.+++  ..|..+..+++|++|++++|.+... +|. .+..++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~~l~  428 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH-AYDRTCAWAE  428 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSC-CSSCCCCCCT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCc-cChhhhcCcc
Confidence            567888999999998888777778888899999999998876  4456788899999999999998863 554 467788


Q ss_pred             CccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCc
Q 038633           89 ELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLV  168 (176)
Q Consensus        89 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~  168 (176)
                      +|++|++++|++.+..|..+.  ++|+.|++++|.++..+   ..+..+++|++|++++|.+.+.++.   .+..+++|+
T Consensus       429 ~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip---~~~~~l~~L~~L~L~~N~l~~l~~~---~~~~l~~L~  500 (562)
T 3a79_B          429 SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIP---KDVTHLQALQELNVASNQLKSVPDG---VFDRLTSLQ  500 (562)
T ss_dssp             TCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCC---TTTTSSCCCSEEECCSSCCCCCCTT---STTTCTTCC
T ss_pred             cCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccC---hhhcCCCCCCEEECCCCCCCCCCHH---HHhcCCCCC
Confidence            999999999998755555432  68999999999885322   2245889999999999999866553   478899999


Q ss_pred             EeeCcCCC
Q 038633          169 ELRLPNCN  176 (176)
Q Consensus       169 ~L~l~~n~  176 (176)
                      .|++++|.
T Consensus       501 ~L~l~~N~  508 (562)
T 3a79_B          501 YIWLHDNP  508 (562)
T ss_dssp             CEECCSCC
T ss_pred             EEEecCCC
Confidence            99999984

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.80  E-value=1.7e-18  Score=127.48  Aligned_cols=148  Identities=21%  Similarity=0.229  Sum_probs=125.9

Q ss_pred             ccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCC
Q 038633           10 DLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKE   89 (176)
Q Consensus        10 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~   89 (176)
                      .+..+++|+.|++++|.+.+.  ..+..+.+|++|++++|.+++. + .+..+++|++|++++|.+...  +. +..+++
T Consensus        80 ~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~  152 (308)
T 1h6u_A           80 PLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNI--SP-LAGLTN  152 (308)
T ss_dssp             GGTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCC--GG-GGGCTT
T ss_pred             hHccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcC--cc-ccCCCC
Confidence            377889999999999998764  3577889999999999999764 3 388999999999999999854  43 888999


Q ss_pred             ccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcE
Q 038633           90 LRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVE  169 (176)
Q Consensus        90 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~  169 (176)
                      |++|++++|++. ..+. +..+++|+.|++++|.++....    +..+++|++|++++|.+.+.+     .+..+++|+.
T Consensus       153 L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~L~~N~l~~~~-----~l~~l~~L~~  221 (308)
T 1h6u_A          153 LQYLSIGNAQVS-DLTP-LANLSKLTTLKADDNKISDISP----LASLPNLIEVHLKNNQISDVS-----PLANTSNLFI  221 (308)
T ss_dssp             CCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECTTSCCCBCG-----GGTTCTTCCE
T ss_pred             ccEEEccCCcCC-CChh-hcCCCCCCEEECCCCccCcChh----hcCCCCCCEEEccCCccCccc-----cccCCCCCCE
Confidence            999999999998 4444 8899999999999999854332    778999999999999998765     3678999999


Q ss_pred             eeCcCC
Q 038633          170 LRLPNC  175 (176)
Q Consensus       170 L~l~~n  175 (176)
                      |++++|
T Consensus       222 L~l~~N  227 (308)
T 1h6u_A          222 VTLTNQ  227 (308)
T ss_dssp             EEEEEE
T ss_pred             EEccCC
Confidence            999887

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.80  E-value=3.2e-19  Score=131.75  Aligned_cols=150  Identities=17%  Similarity=0.042  Sum_probs=83.2

Q ss_pred             cccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccc-------------------
Q 038633           15 SRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNF-------------------   75 (176)
Q Consensus        15 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~-------------------   75 (176)
                      ++++.|++++|.+.+..+..+..+.+|++|++++|.+++..+  +..+++|++|++++|.+                   
T Consensus        34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l  111 (317)
T 3o53_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI  111 (317)
T ss_dssp             GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCC
T ss_pred             CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCcc
Confidence            455555555555554444444455555555555555543332  44444454444444443                   


Q ss_pred             ---------------------cCCcchhhhcCcCCccEEEeecccCCCCcchhc-cCCCCCCEEEccCCccCcccccccc
Q 038633           76 ---------------------KGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSL-GNLTNLLYLDLNNFLDQSNQIGLGW  133 (176)
Q Consensus        76 ---------------------~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~-~~l~~L~~L~l~~n~~~~~~~~~~~  133 (176)
                                           ... .+..+..+++|++|++++|.+.+..+..+ ..+++|+.|++++|.++....    
T Consensus       112 ~~~~~~~~~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----  186 (317)
T 3o53_A          112 SRVSCSRGQGKKNIYLANNKITML-RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG----  186 (317)
T ss_dssp             SEEEECCCSSCEEEECCSSCCCSG-GGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC----
T ss_pred             CCcCccccCCCCEEECCCCCCCCc-cchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc----
Confidence                                 322 23355566777777777777764444444 356677777777776643221    


Q ss_pred             cCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCC
Q 038633          134 LSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNC  175 (176)
Q Consensus       134 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n  175 (176)
                      ...+++|++|++++|.+.+.++    .+..+++|++|++++|
T Consensus       187 ~~~l~~L~~L~Ls~N~l~~l~~----~~~~l~~L~~L~L~~N  224 (317)
T 3o53_A          187 QVVFAKLKTLDLSSNKLAFMGP----EFQSAAGVTWISLRNN  224 (317)
T ss_dssp             CCCCTTCCEEECCSSCCCEECG----GGGGGTTCSEEECTTS
T ss_pred             ccccccCCEEECCCCcCCcchh----hhcccCcccEEECcCC
Confidence            2346677777777777765443    3555666777766665

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.79  E-value=3.1e-19  Score=131.39  Aligned_cols=152  Identities=17%  Similarity=0.064  Sum_probs=105.8

Q ss_pred             cccccceeeccCccccCCCCcCcccCCcceEeecCCCCcccc--ch--hhhcCCCCCcEEEccCccccCCcchh----hh
Q 038633           13 LLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGP--IS--PSLLQLKDLKYLDLSMNNFKGFKVPE----FI   84 (176)
Q Consensus        13 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~--~~--~~l~~l~~L~~L~l~~~~~~~~~~p~----~~   84 (176)
                      .+++++.|++++|.+....+..+..+.+|++|++++|.+.+.  .+  ..+..+++|++|++++|.++  ..+.    .+
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~--~l~~~~~~l~  220 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME--TPTGVCAALA  220 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC--CHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC--chHHHHHHHH
Confidence            466777777777777666666667777788888888776542  22  22356777888888888776  2333    24


Q ss_pred             cCcCCccEEEeecccCCCCcchhccCC---CCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHh
Q 038633           85 GSLKELRYLNLSGSFFSGTIPQSLGNL---TNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESI  161 (176)
Q Consensus        85 ~~l~~L~~L~l~~~~~~~~~p~~~~~l---~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  161 (176)
                      ..+++|++|++++|++.+..|..++.+   ++|++|++++|+++..+.   .+  .++|++|++++|.+.+.+     .+
T Consensus       221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~---~~--~~~L~~L~Ls~N~l~~~~-----~~  290 (310)
T 4glp_A          221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPK---GL--PAKLRVLDLSSNRLNRAP-----QP  290 (310)
T ss_dssp             HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCS---CC--CSCCSCEECCSCCCCSCC-----CT
T ss_pred             hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhh---hh--cCCCCEEECCCCcCCCCc-----hh
Confidence            567888888888888876657666655   688888888888853222   22  268888888888888653     24


Q ss_pred             hccccCcEeeCcCCC
Q 038633          162 SMLRSLVELRLPNCN  176 (176)
Q Consensus       162 ~~~~~L~~L~l~~n~  176 (176)
                      ..+++|+.|++++|+
T Consensus       291 ~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          291 DELPEVDNLTLDGNP  305 (310)
T ss_dssp             TSCCCCSCEECSSTT
T ss_pred             hhCCCccEEECcCCC
Confidence            567888899988874

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.79  E-value=4.7e-18  Score=126.68  Aligned_cols=149  Identities=19%  Similarity=0.203  Sum_probs=80.9

Q ss_pred             cccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCc
Q 038633           11 LHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKEL   90 (176)
Q Consensus        11 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L   90 (176)
                      +..+++++.|++++|.+.+..+  ...+..+++|++++|.+++..+  +..+++|++|++++|.+..  .+. +..+++|
T Consensus       173 ~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~--~~~-~~~l~~L  245 (347)
T 4fmz_A          173 IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD--LSP-LANLSQL  245 (347)
T ss_dssp             GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC--CGG-GTTCTTC
T ss_pred             hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC--Ccc-hhcCCCC
Confidence            3344555555555555443222  3344444555555554443222  4556666666666666653  222 5556666


Q ss_pred             cEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEe
Q 038633           91 RYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVEL  170 (176)
Q Consensus        91 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L  170 (176)
                      ++|++++|.+.. . +.+..+++|+.|++++|.+...    ..+..+++|++|++++|.+.+.++.   .++.+++|++|
T Consensus       246 ~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L  316 (347)
T 4fmz_A          246 TWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI----SVLNNLSQLNSLFLNNNQLGNEDME---VIGGLTNLTTL  316 (347)
T ss_dssp             CEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSCCCGGGHH---HHHTCTTCSEE
T ss_pred             CEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC----hhhcCCCCCCEEECcCCcCCCcChh---HhhccccCCEE
Confidence            666666666652 2 3455666666666666665332    1245566666666666666655543   45556666666


Q ss_pred             eCcCC
Q 038633          171 RLPNC  175 (176)
Q Consensus       171 ~l~~n  175 (176)
                      ++++|
T Consensus       317 ~L~~n  321 (347)
T 4fmz_A          317 FLSQN  321 (347)
T ss_dssp             ECCSS
T ss_pred             EccCC
Confidence            66665

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.79  E-value=5.8e-19  Score=118.94  Aligned_cols=133  Identities=21%  Similarity=0.149  Sum_probs=64.6

Q ss_pred             CcceEeecCCCCcc-ccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEE
Q 038633           39 SFDTYEDDAGHELG-GPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYL  117 (176)
Q Consensus        39 ~~l~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L  117 (176)
                      .++++|++++|.++ +.+|..+..+++|++|++++|.+..  . ..+..+++|++|++++|++.+..|..+..+++|+.|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS--V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC--C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC--h-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            34555555555554 3444444555555555555555542  2 344455555555555555543344444445555555


Q ss_pred             EccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCC
Q 038633          118 DLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNC  175 (176)
Q Consensus       118 ~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n  175 (176)
                      ++++|.++..+. ...+..+++|++|++++|.+.+.++.....+..+++|++|++++|
T Consensus       101 ~Ls~N~l~~~~~-~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A          101 NLSGNKLKDIST-LEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             ECBSSSCCSSGG-GGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred             eccCCccCcchh-HHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence            555555532111 122445555555555555555443311114445555555555544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.79  E-value=4.6e-19  Score=117.21  Aligned_cols=133  Identities=19%  Similarity=0.142  Sum_probs=99.8

Q ss_pred             CCcceEeecCCCCcc-ccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCE
Q 038633           38 DSFDTYEDDAGHELG-GPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLY  116 (176)
Q Consensus        38 ~~~l~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~  116 (176)
                      ..+++.|++++|.++ +.+|..+..+++|++|++++|.+..  . ..+..+++|++|++++|++.+..|..++.+++|+.
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS--I-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC--C-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC--c-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            356778888888886 5677777788888888888888773  4 66777888888888888887557777777888888


Q ss_pred             EEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcC
Q 038633          117 LDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPN  174 (176)
Q Consensus       117 L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~  174 (176)
                      |++++|.+...+ ....+..+++|++|++++|.+.+.++.....++.+++|+.|++++
T Consensus        93 L~ls~N~i~~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           93 LNLSGNKIKDLS-TIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             EECTTSCCCSHH-HHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             EECCCCcCCChH-HHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            888888874322 113477888899999999988776652123677788999998864

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.79  E-value=6.2e-20  Score=135.14  Aligned_cols=131  Identities=18%  Similarity=-0.011  Sum_probs=57.3

Q ss_pred             CCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCC-cch--hhhcCcCCccEEEeecccCCCCcch----hccC
Q 038633           38 DSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGF-KVP--EFIGSLKELRYLNLSGSFFSGTIPQ----SLGN  110 (176)
Q Consensus        38 ~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~p--~~~~~l~~L~~L~l~~~~~~~~~p~----~~~~  110 (176)
                      +.+|++|++++|.+++..+..+..+++|++|++++|.+.+. ..+  ..+..+++|++|++++|++. ..+.    .++.
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~  222 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA  222 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence            44444444544444444444444455555555555543310 011  11133445555555555543 2222    1234


Q ss_pred             CCCCCEEEccCCccCcc-cccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCC
Q 038633          111 LTNLLYLDLNNFLDQSN-QIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNC  175 (176)
Q Consensus       111 l~~L~~L~l~~n~~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n  175 (176)
                      +++|++|++++|.+... +.....+..+++|++|++++|.+...+.    .+  .++|++|++++|
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~----~~--~~~L~~L~Ls~N  282 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPK----GL--PAKLRVLDLSSN  282 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCS----CC--CSCCSCEECCSC
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhh----hh--cCCCCEEECCCC
Confidence            45555555555555221 1111111122456666666666553322    22  146666666655

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.78  E-value=7.6e-20  Score=135.75  Aligned_cols=160  Identities=22%  Similarity=0.208  Sum_probs=87.7

Q ss_pred             cccccceeeccCccccCC-CCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCc-cccCCcchhhhcCcCCc
Q 038633           13 LLSRIFALSLLRCCSVGS-ALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMN-NFKGFKVPEFIGSLKEL   90 (176)
Q Consensus        13 ~~~~l~~l~l~~~~~~~~-~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~p~~~~~l~~L   90 (176)
                      .+++++.|++++|.+... .+.....+++|++|++++|.+++..+..+..+++|++|++++| .++....+..+..+++|
T Consensus        91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L  170 (336)
T 2ast_B           91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  170 (336)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence            456666666666665433 3344455566666666666666566666666666666666666 44432144445566666


Q ss_pred             cEEEeecc-cCCCC-cchhccCCC-CCCEEEccCCccCcc-cccccccCCCCCccEEeccCCC-CCCchhhhHHHhhccc
Q 038633           91 RYLNLSGS-FFSGT-IPQSLGNLT-NLLYLDLNNFLDQSN-QIGLGWLSGLPSLKYLNLGGAD-LSKDAAYWLESISMLR  165 (176)
Q Consensus        91 ~~L~l~~~-~~~~~-~p~~~~~l~-~L~~L~l~~n~~~~~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~~~  165 (176)
                      ++|++++| .+.+. .+..+..++ +|++|++++|.+... ......+..+++|++|++++|. +.+..+.   .+..++
T Consensus       171 ~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~---~l~~l~  247 (336)
T 2ast_B          171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ---EFFQLN  247 (336)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG---GGGGCT
T ss_pred             CEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH---HHhCCC
Confidence            66666666 55422 344455566 666666666632101 1111223455666666666665 3333332   445556


Q ss_pred             cCcEeeCcCC
Q 038633          166 SLVELRLPNC  175 (176)
Q Consensus       166 ~L~~L~l~~n  175 (176)
                      +|++|++++|
T Consensus       248 ~L~~L~l~~~  257 (336)
T 2ast_B          248 YLQHLSLSRC  257 (336)
T ss_dssp             TCCEEECTTC
T ss_pred             CCCEeeCCCC
Confidence            6666666655

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.78  E-value=3.7e-18  Score=135.87  Aligned_cols=149  Identities=22%  Similarity=0.159  Sum_probs=107.3

Q ss_pred             cccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcC
Q 038633            9 SDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLK   88 (176)
Q Consensus         9 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~   88 (176)
                      +.+..+++|+.|++++|.+.+..+  +..+.+|+.|++++|.+++ + ..+..+++|++|++++|.+..  + +.+..++
T Consensus        59 ~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~--l-~~l~~l~  131 (605)
T 1m9s_A           59 QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLKSLSLEHNGISD--I-NGLVHLP  131 (605)
T ss_dssp             TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCCEEECTTSCCCC--C-GGGGGCT
T ss_pred             hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCCEEEecCCCCCC--C-ccccCCC
Confidence            456667777788887777766543  6677777888888887754 2 356777888888888887773  3 3466778


Q ss_pred             CccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCc
Q 038633           89 ELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLV  168 (176)
Q Consensus        89 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~  168 (176)
                      +|+.|++++|++.+.  ..+..+++|+.|++++|.+.....    +..+++|+.|+|++|.+.+. +    .+..+++|+
T Consensus       132 ~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~i~~l-~----~l~~l~~L~  200 (605)
T 1m9s_A          132 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNHISDL-R----ALAGLKNLD  200 (605)
T ss_dssp             TCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCBC-G----GGTTCTTCS
T ss_pred             ccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh----hccCCCCCEEECcCCCCCCC-h----HHccCCCCC
Confidence            888888888887633  457778888888888887743222    67788888888888888764 3    567788888


Q ss_pred             EeeCcCC
Q 038633          169 ELRLPNC  175 (176)
Q Consensus       169 ~L~l~~n  175 (176)
                      .|++++|
T Consensus       201 ~L~L~~N  207 (605)
T 1m9s_A          201 VLELFSQ  207 (605)
T ss_dssp             EEECCSE
T ss_pred             EEEccCC
Confidence            8888876

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.78  E-value=2e-18  Score=119.30  Aligned_cols=136  Identities=18%  Similarity=0.129  Sum_probs=114.8

Q ss_pred             ccccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCc
Q 038633            8 LSDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSL   87 (176)
Q Consensus         8 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l   87 (176)
                      ++.+..+++++.|++++|.+...  .....+++|++|++++|.+++..+..+..+++|++|++++|.+... .|..+..+
T Consensus        59 l~~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~-~~~~l~~l  135 (197)
T 4ezg_A           59 LTGIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDS-ILTKINTL  135 (197)
T ss_dssp             CTTGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGG-GHHHHTTC
T ss_pred             hHHHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcH-hHHHHhhC
Confidence            34677889999999999966433  4667789999999999999988889999999999999999999975 78899999


Q ss_pred             CCccEEEeeccc-CCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCC
Q 038633           88 KELRYLNLSGSF-FSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSK  152 (176)
Q Consensus        88 ~~L~~L~l~~~~-~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  152 (176)
                      ++|++|++++|. +. ..| .+..+++|+.|++++|.++...    .+..+++|++|++++|.+.+
T Consensus       136 ~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~----~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          136 PKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR----GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             SSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT----TGGGCSSCCEEEECBC----
T ss_pred             CCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH----HhccCCCCCEEEeeCcccCC
Confidence            999999999998 65 555 6889999999999999985433    37889999999999999753

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.78  E-value=3.9e-18  Score=117.45  Aligned_cols=132  Identities=19%  Similarity=0.089  Sum_probs=109.1

Q ss_pred             ceeeccCccccCCCCcCcccCCcceEeecCCCCccccchh-hhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEee
Q 038633           18 FALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISP-SLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLS   96 (176)
Q Consensus        18 ~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~   96 (176)
                      ++++++++.+... |....  ..+++|++++|.+++..+. .+..+++|++|++++|.+... .|..+..+++|++|+++
T Consensus        11 ~~l~~s~~~l~~i-p~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLKEI-PRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCSSC-CSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCcCcC-ccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc-CHhHcCCcccCCEEECC
Confidence            7889998888554 33222  2789999999999766654 488999999999999999976 78899999999999999


Q ss_pred             cccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchh
Q 038633           97 GSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAA  155 (176)
Q Consensus        97 ~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  155 (176)
                      +|++.+..+..++.+++|+.|++++|.++  ...+..+..+++|++|++++|.+....+
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQIS--CVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCC--EECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCC--eeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            99998666667889999999999999984  3444558899999999999999886543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.78  E-value=6e-18  Score=126.07  Aligned_cols=152  Identities=19%  Similarity=0.187  Sum_probs=128.1

Q ss_pred             cccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcC
Q 038633            9 SDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLK   88 (176)
Q Consensus         9 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~   88 (176)
                      +.+..+++++.+++.+|.+....+  ...+.+|++|++++|.+++..+  +..+++|++|++++|.+..  + +.+..++
T Consensus       193 ~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~--~-~~~~~l~  265 (347)
T 4fmz_A          193 SPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--I-NAVKDLT  265 (347)
T ss_dssp             GGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC--C-GGGTTCT
T ss_pred             ccccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC--C-hhHhcCC
Confidence            346778999999999998876544  6788899999999999976544  8899999999999999884  3 4678899


Q ss_pred             CccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCc
Q 038633           89 ELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLV  168 (176)
Q Consensus        89 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~  168 (176)
                      +|++|++++|++.+ . +.+..+++|+.|++++|++.  ......+..+++|++|++++|.+.+.++     ++.+++|+
T Consensus       266 ~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~  336 (347)
T 4fmz_A          266 KLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLG--NEDMEVIGGLTNLTTLFLSQNHITDIRP-----LASLSKMD  336 (347)
T ss_dssp             TCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCC--GGGHHHHHTCTTCSEEECCSSSCCCCGG-----GGGCTTCS
T ss_pred             CcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCC--CcChhHhhccccCCEEEccCCccccccC-----hhhhhccc
Confidence            99999999999974 4 45788999999999999983  3444557889999999999999987754     57799999


Q ss_pred             EeeCcCCC
Q 038633          169 ELRLPNCN  176 (176)
Q Consensus       169 ~L~l~~n~  176 (176)
                      +|++++|.
T Consensus       337 ~L~l~~N~  344 (347)
T 4fmz_A          337 SADFANQV  344 (347)
T ss_dssp             EESSSCC-
T ss_pred             eeehhhhc
Confidence            99999984

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.78  E-value=1e-18  Score=143.92  Aligned_cols=164  Identities=17%  Similarity=0.059  Sum_probs=128.4

Q ss_pred             ecccccccccccceeeccCccccCCC-CcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhh-
Q 038633            6 FALSDLHLLSRIFALSLLRCCSVGSA-LAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEF-   83 (176)
Q Consensus         6 ~~~~~~~~~~~l~~l~l~~~~~~~~~-~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~-   83 (176)
                      +...++..+++|+.|++++|...... +..+..+.+|++|++++|.+++..|..|.++++|++|++++|.+.+. .|.. 
T Consensus        39 i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-~~~~~  117 (844)
T 3j0a_A           39 VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDA-VLKDG  117 (844)
T ss_dssp             ECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSC-CSTTC
T ss_pred             cChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcc-cccCc
Confidence            44557788899999999999665544 66788899999999999999988899999999999999999999865 5654 


Q ss_pred             -hcCcCCccEEEeecccCCCCcc-hhccCCCCCCEEEccCCccCcccccccccCCC--CCccEEeccCCCCCCchhhhHH
Q 038633           84 -IGSLKELRYLNLSGSFFSGTIP-QSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGL--PSLKYLNLGGADLSKDAAYWLE  159 (176)
Q Consensus        84 -~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~  159 (176)
                       +..+++|++|++++|.+.+..+ ..++.+++|+.|++++|.++.  .....+..+  ++|+.|++++|.+.+..+.   
T Consensus       118 ~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~--~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~---  192 (844)
T 3j0a_A          118 YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL--VCEHELEPLQGKTLSFFSLAANSLYSRVSV---  192 (844)
T ss_dssp             CCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC--CCSGGGHHHHHCSSCCCEECCSBSCCCCCC---
T ss_pred             cccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe--eCHHHcccccCCccceEECCCCcccccccc---
Confidence             8889999999999999975544 568899999999999998843  222234444  6788888888887765543   


Q ss_pred             Hhhcccc------CcEeeCcCC
Q 038633          160 SISMLRS------LVELRLPNC  175 (176)
Q Consensus       160 ~l~~~~~------L~~L~l~~n  175 (176)
                      .++.++.      |+.|++++|
T Consensus       193 ~~~~~~~~~~~~~L~~L~Ls~n  214 (844)
T 3j0a_A          193 DWGKCMNPFRNMVLEILDVSGN  214 (844)
T ss_dssp             CCCSSSCTTTTCCBSEEBCSSC
T ss_pred             chhhcCCccccCceeEEecCCC
Confidence            3443333      788888776

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.78  E-value=1.1e-18  Score=128.89  Aligned_cols=129  Identities=16%  Similarity=0.068  Sum_probs=92.6

Q ss_pred             CCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhh-cCcCCccEEEeecccCCCCcchhccCCCCCCE
Q 038633           38 DSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFI-GSLKELRYLNLSGSFFSGTIPQSLGNLTNLLY  116 (176)
Q Consensus        38 ~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~-~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~  116 (176)
                      ..+|++|++++|.+++..+..+..+++|++|++++|.+... .+..+ ..+++|++|++++|++. ..+. ...+++|+.
T Consensus       119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~~l~~L~~L~L~~N~l~-~~~~-~~~l~~L~~  195 (317)
T 3o53_A          119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV-NFAELAASSDTLEHLNLQYNFIY-DVKG-QVVFAKLKT  195 (317)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE-EGGGGGGGTTTCCEEECTTSCCC-EEEC-CCCCTTCCE
T ss_pred             cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc-cHHHHhhccCcCCEEECCCCcCc-cccc-ccccccCCE
Confidence            45677888888888776666777788888888888888765 55555 36788888888888886 4443 335778888


Q ss_pred             EEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633          117 LDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN  176 (176)
Q Consensus       117 L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~  176 (176)
                      |++++|+++..+.   .+..+++|++|++++|.+.+. +.   .+..+++|+.|++++|.
T Consensus       196 L~Ls~N~l~~l~~---~~~~l~~L~~L~L~~N~l~~l-~~---~~~~l~~L~~L~l~~N~  248 (317)
T 3o53_A          196 LDLSSNKLAFMGP---EFQSAAGVTWISLRNNKLVLI-EK---ALRFSQNLEHFDLRGNG  248 (317)
T ss_dssp             EECCSSCCCEECG---GGGGGTTCSEEECTTSCCCEE-CT---TCCCCTTCCEEECTTCC
T ss_pred             EECCCCcCCcchh---hhcccCcccEEECcCCcccch-hh---HhhcCCCCCEEEccCCC
Confidence            8888887743222   266778888888888888754 33   56677888888888774

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.77  E-value=1.8e-18  Score=116.54  Aligned_cols=138  Identities=25%  Similarity=0.172  Sum_probs=116.5

Q ss_pred             cccccceeeccCcccc-CCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCcc
Q 038633           13 LLSRIFALSLLRCCSV-GSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELR   91 (176)
Q Consensus        13 ~~~~l~~l~l~~~~~~-~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~   91 (176)
                      ..++++.|++++|.+. +..+..+..+.+|++|++++|.+++.  ..+..+++|++|++++|.+... .|..+..+++|+
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~   98 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLT   98 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCC
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCC
Confidence            3578999999999997 56666678889999999999999865  7788999999999999999965 788888899999


Q ss_pred             EEEeecccCCCCcc--hhccCCCCCCEEEccCCccCcccc-cccccCCCCCccEEeccCCCCCCch
Q 038633           92 YLNLSGSFFSGTIP--QSLGNLTNLLYLDLNNFLDQSNQI-GLGWLSGLPSLKYLNLGGADLSKDA  154 (176)
Q Consensus        92 ~L~l~~~~~~~~~p--~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~  154 (176)
                      +|++++|.+. .+|  ..+..+++|+.|++++|++...+. ....+..+++|++|++++|.+...+
T Consensus        99 ~L~Ls~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  163 (168)
T 2ell_A           99 HLNLSGNKLK-DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP  163 (168)
T ss_dssp             EEECBSSSCC-SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred             EEeccCCccC-cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence            9999999998 444  678899999999999999843322 0135789999999999999987554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.77  E-value=6.8e-18  Score=132.05  Aligned_cols=133  Identities=22%  Similarity=0.215  Sum_probs=108.0

Q ss_pred             ccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCC-cchhhhcCcCCccEEEeecccCCCCcchh-ccCCCC
Q 038633           36 FRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGF-KVPEFIGSLKELRYLNLSGSFFSGTIPQS-LGNLTN  113 (176)
Q Consensus        36 ~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~  113 (176)
                      ..+..|++|++++|.+++..|..+..+++|++|++++|.+... .+|..+..+++|++|++++|++.+.+|.. +..+++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            5677899999999999888889999999999999999998852 15567889999999999999998657754 778899


Q ss_pred             CCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633          114 LLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN  176 (176)
Q Consensus       114 L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~  176 (176)
                      |+.|++++|.+..  ..+..+.  ++|++|++++|.+...+.    .+..+++|++|++++|+
T Consensus       401 L~~L~Ls~N~l~~--~~~~~l~--~~L~~L~Ls~N~l~~ip~----~~~~l~~L~~L~L~~N~  455 (520)
T 2z7x_B          401 LLSLNMSSNILTD--TIFRCLP--PRIKVLDLHSNKIKSIPK----QVVKLEALQELNVASNQ  455 (520)
T ss_dssp             CCEEECCSSCCCG--GGGGSCC--TTCCEEECCSSCCCCCCG----GGGGCTTCCEEECCSSC
T ss_pred             CCEEECcCCCCCc--chhhhhc--ccCCEEECCCCcccccch----hhhcCCCCCEEECCCCc
Confidence            9999999998842  2221121  689999999999985544    55689999999999984

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.77  E-value=1.9e-18  Score=134.57  Aligned_cols=129  Identities=16%  Similarity=0.075  Sum_probs=104.8

Q ss_pred             CCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhc-CcCCccEEEeecccCCCCcchhccCCCCCCE
Q 038633           38 DSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIG-SLKELRYLNLSGSFFSGTIPQSLGNLTNLLY  116 (176)
Q Consensus        38 ~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~-~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~  116 (176)
                      +++|+.|++++|.+++..|..+..+++|++|++++|.+.+. .|..+. .+++|++|++++|.+. ..|. ...+++|+.
T Consensus       119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~~l~~L~~L~Ls~N~l~-~~~~-~~~l~~L~~  195 (487)
T 3oja_A          119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV-NFAELAASSDTLEHLNLQYNFIY-DVKG-QVVFAKLKT  195 (487)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEE-EGGGGGGGTTTCCEEECTTSCCC-EEEC-CCCCTTCCE
T ss_pred             cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCc-ChHHHhhhCCcccEEecCCCccc-cccc-cccCCCCCE
Confidence            46788999999999888888888999999999999999976 777765 7899999999999987 3343 346889999


Q ss_pred             EEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633          117 LDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN  176 (176)
Q Consensus       117 L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~  176 (176)
                      |++++|.++..+   ..+..+++|+.|++++|.+.+.++    .++.+++|+.|++++|.
T Consensus       196 L~Ls~N~l~~~~---~~~~~l~~L~~L~Ls~N~l~~lp~----~l~~l~~L~~L~l~~N~  248 (487)
T 3oja_A          196 LDLSSNKLAFMG---PEFQSAAGVTWISLRNNKLVLIEK----ALRFSQNLEHFDLRGNG  248 (487)
T ss_dssp             EECCSSCCCEEC---GGGGGGTTCSEEECTTSCCCEECT----TCCCCTTCCEEECTTCC
T ss_pred             EECCCCCCCCCC---HhHcCCCCccEEEecCCcCcccch----hhccCCCCCEEEcCCCC
Confidence            999999885322   236788899999999999986543    56778899999999884

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.77  E-value=4.1e-19  Score=131.76  Aligned_cols=162  Identities=19%  Similarity=0.113  Sum_probs=125.0

Q ss_pred             ccccccccceeeccCccccCCCCcCcccCCcceEeecCCC-Ccccc-chhhhcCCCCCcEEEccCc-cccCCcchhhhcC
Q 038633           10 DLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGH-ELGGP-ISPSLLQLKDLKYLDLSMN-NFKGFKVPEFIGS   86 (176)
Q Consensus        10 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~l~~~-~~~~~~~p~~~~~   86 (176)
                      .+..+++|+.|++++|.+.+..+.....+++|++|++++| .+++. ++..+..+++|++|++++| .++...++..+..
T Consensus       113 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  192 (336)
T 2ast_B          113 ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH  192 (336)
T ss_dssp             HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH
T ss_pred             HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHh
Confidence            3556889999999999887666666677899999999999 68763 6777888999999999999 8875325677888


Q ss_pred             cC-CccEEEeecc--cCC-CCcchhccCCCCCCEEEccCCc-cCcccccccccCCCCCccEEeccCCCCCCchhhhHHHh
Q 038633           87 LK-ELRYLNLSGS--FFS-GTIPQSLGNLTNLLYLDLNNFL-DQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESI  161 (176)
Q Consensus        87 l~-~L~~L~l~~~--~~~-~~~p~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  161 (176)
                      ++ +|++|++++|  .+. ..+|..+..+++|+.|++++|. ++  ......+..+++|++|++++|.-  ..+..+..+
T Consensus       193 l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~--~~~~~~l~~l~~L~~L~l~~~~~--~~~~~~~~l  268 (336)
T 2ast_B          193 VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK--NDCFQEFFQLNYLQHLSLSRCYD--IIPETLLEL  268 (336)
T ss_dssp             SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC--GGGGGGGGGCTTCCEEECTTCTT--CCGGGGGGG
T ss_pred             cccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCC--HHHHHHHhCCCCCCEeeCCCCCC--CCHHHHHHH
Confidence            88 9999999999  444 3456677788999999999998 42  22333577889999999999962  222222357


Q ss_pred             hccccCcEeeCcCC
Q 038633          162 SMLRSLVELRLPNC  175 (176)
Q Consensus       162 ~~~~~L~~L~l~~n  175 (176)
                      +.+++|+.|++++|
T Consensus       269 ~~~~~L~~L~l~~~  282 (336)
T 2ast_B          269 GEIPTLKTLQVFGI  282 (336)
T ss_dssp             GGCTTCCEEECTTS
T ss_pred             hcCCCCCEEeccCc
Confidence            78899999999876

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.76  E-value=1.7e-17  Score=128.37  Aligned_cols=147  Identities=23%  Similarity=0.217  Sum_probs=87.4

Q ss_pred             cccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCc
Q 038633           11 LHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKEL   90 (176)
Q Consensus        11 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L   90 (176)
                      +..+++++.|++++|.+.+..+  ...+.+|++|++++|.+++..+  +..+++|++|++++|.+.+.  +. +..+++|
T Consensus       239 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~--~~-~~~l~~L  311 (466)
T 1o6v_A          239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI--SP-ISNLKNL  311 (466)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCC--GG-GGGCTTC
T ss_pred             hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCc--hh-hcCCCCC
Confidence            3444555555555555544322  4455556666666666654322  55666666666666666632  22 5566666


Q ss_pred             cEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEe
Q 038633           91 RYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVEL  170 (176)
Q Consensus        91 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L  170 (176)
                      ++|++++|++.+..|  +..+++|+.|++.+|++...    ..+..+++|++|++++|.+.+.+|     +..++.|+.|
T Consensus       312 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L  380 (466)
T 1o6v_A          312 TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV----SSLANLTNINWLSAGHNQISDLTP-----LANLTRITQL  380 (466)
T ss_dssp             SEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC----GGGTTCTTCCEEECCSSCCCBCGG-----GTTCTTCCEE
T ss_pred             CEEECcCCcCCCchh--hccCccCCEeECCCCccCCc----hhhccCCCCCEEeCCCCccCccch-----hhcCCCCCEE
Confidence            666666666654333  55666777777777766432    235677777777777777766553     4567777777


Q ss_pred             eCcCC
Q 038633          171 RLPNC  175 (176)
Q Consensus       171 ~l~~n  175 (176)
                      ++++|
T Consensus       381 ~l~~n  385 (466)
T 1o6v_A          381 GLNDQ  385 (466)
T ss_dssp             ECCCE
T ss_pred             eccCC
Confidence            77765

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.76  E-value=1.1e-17  Score=133.05  Aligned_cols=150  Identities=25%  Similarity=0.143  Sum_probs=127.6

Q ss_pred             cccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcC
Q 038633            9 SDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLK   88 (176)
Q Consensus         9 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~   88 (176)
                      .++..+++|+.|++++|.+...  +.+..+.+|+.|++++|.+++..+  +..+++|+.|++++|.+..  +| .+..++
T Consensus        37 ~~~~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~  109 (605)
T 1m9s_A           37 VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD--LS-SLKDLK  109 (605)
T ss_dssp             ECHHHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC--CT-TSTTCT
T ss_pred             cchhcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC--Ch-hhccCC
Confidence            3455678999999999998664  357788999999999999986554  8899999999999999983  44 788899


Q ss_pred             CccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCc
Q 038633           89 ELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLV  168 (176)
Q Consensus        89 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~  168 (176)
                      +|++|++++|++.. + +.+..+++|+.|++++|.+...    ..+..+++|+.|+|++|.+.+.++     +..+++|+
T Consensus       110 ~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l----~~l~~l~~L~~L~Ls~N~l~~~~~-----l~~l~~L~  178 (605)
T 1m9s_A          110 KLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI----TVLSRLTKLDTLSLEDNQISDIVP-----LAGLTKLQ  178 (605)
T ss_dssp             TCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC----GGGGSCTTCSEEECCSSCCCCCGG-----GTTCTTCC
T ss_pred             CCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc----hhhcccCCCCEEECcCCcCCCchh-----hccCCCCC
Confidence            99999999999973 3 4588999999999999998543    347899999999999999987754     67899999


Q ss_pred             EeeCcCCC
Q 038633          169 ELRLPNCN  176 (176)
Q Consensus       169 ~L~l~~n~  176 (176)
                      .|+|++|+
T Consensus       179 ~L~Ls~N~  186 (605)
T 1m9s_A          179 NLYLSKNH  186 (605)
T ss_dssp             EEECCSSC
T ss_pred             EEECcCCC
Confidence            99999984

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.76  E-value=5.1e-18  Score=116.86  Aligned_cols=126  Identities=25%  Similarity=0.258  Sum_probs=107.6

Q ss_pred             eEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchh-hhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEcc
Q 038633           42 TYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPE-FIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLN  120 (176)
Q Consensus        42 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~  120 (176)
                      +.++++++.++ .+|..+.  ..+++|++++|.+... .+. .+..+++|++|++++|++.+..|..++.+++|+.|+++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRI-SSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSB-CCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCcc-CCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            57899999994 6676553  3899999999999954 443 48899999999999999997778899999999999999


Q ss_pred             CCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633          121 NFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN  176 (176)
Q Consensus       121 ~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~  176 (176)
                      +|.++  ......+..+++|++|++++|.+.+.++.   .+..+++|++|++++|.
T Consensus        87 ~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A           87 ENKIK--EISNKMFLGLHQLKTLNLYDNQISCVMPG---SFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             SCCCC--EECSSSSTTCTTCCEEECCSSCCCEECTT---SSTTCTTCCEEECTTCC
T ss_pred             CCcCC--ccCHHHhcCCCCCCEEECCCCcCCeeCHH---HhhcCCCCCEEEeCCCC
Confidence            99994  34445588999999999999999988776   78889999999999984

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.76  E-value=5.6e-18  Score=111.94  Aligned_cols=132  Identities=26%  Similarity=0.151  Sum_probs=110.6

Q ss_pred             cccccceeeccCcccc-CCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCcc
Q 038633           13 LLSRIFALSLLRCCSV-GSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELR   91 (176)
Q Consensus        13 ~~~~l~~l~l~~~~~~-~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~   91 (176)
                      ..++++.|++++|.+. +..+..+..+.+|++|++++|.+++.  ..+..+++|++|++++|.+... +|..+..+++|+
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~   91 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLT   91 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCC
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCC
Confidence            3578999999999998 56677778899999999999999866  7788999999999999999975 888888899999


Q ss_pred             EEEeecccCCCC-cchhccCCCCCCEEEccCCccCcccc-cccccCCCCCccEEeccC
Q 038633           92 YLNLSGSFFSGT-IPQSLGNLTNLLYLDLNNFLDQSNQI-GLGWLSGLPSLKYLNLGG  147 (176)
Q Consensus        92 ~L~l~~~~~~~~-~p~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~l~~L~~L~l~~  147 (176)
                      +|++++|++.+. .+..++.+++|+.|++++|++...+. ....+..+++|+.|++++
T Consensus        92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            999999999842 23778899999999999999843322 013477899999998763

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.75  E-value=2.6e-17  Score=113.42  Aligned_cols=127  Identities=19%  Similarity=0.122  Sum_probs=106.7

Q ss_pred             ceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeec
Q 038633           18 FALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSG   97 (176)
Q Consensus        18 ~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~   97 (176)
                      +.++++++.+......   ...++++|++++|.++ .+|..|..+++|++|++++|.+... .+..+..+++|++|++++
T Consensus        13 ~~l~~~~~~l~~ip~~---~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKG---IPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCSSCCSC---CCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCCcCCCC---CCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEe-CHhHccCCCCCCEEECCC
Confidence            5788888877654322   2357999999999996 6778999999999999999999976 667899999999999999


Q ss_pred             ccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCC
Q 038633           98 SFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLS  151 (176)
Q Consensus        98 ~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~  151 (176)
                      |++....|..+..+++|+.|++++|.++.  .....+..+++|+.|++++|.+.
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISV--VPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCB--CCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCe--eChhhhhcCccccEEEeCCCCee
Confidence            99986666789999999999999999953  33445788999999999999885

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.75  E-value=1.8e-17  Score=114.24  Aligned_cols=125  Identities=28%  Similarity=0.285  Sum_probs=107.7

Q ss_pred             eEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEccC
Q 038633           42 TYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNN  121 (176)
Q Consensus        42 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~  121 (176)
                      +.++++++.++ .+|..+  .+++++|++++|.+.  .+|..+..+++|++|++++|++.+..+..|..+++|+.|++++
T Consensus        13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~--~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT--LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC--SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc--hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            46899999986 566654  468999999999999  5788999999999999999999966667899999999999999


Q ss_pred             CccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633          122 FLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN  176 (176)
Q Consensus       122 n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~  176 (176)
                      |.++  ......|..+++|++|+|++|.+...++.   .+..+++|+.|++++|.
T Consensus        88 N~l~--~i~~~~f~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           88 NRLR--CIPPRTFDGLKSLRLLSLHGNDISVVPEG---AFNDLSALSHLAIGANP  137 (193)
T ss_dssp             SCCC--BCCTTTTTTCTTCCEEECCSSCCCBCCTT---TTTTCTTCCEEECCSSC
T ss_pred             CccC--EeCHHHhCCCCCCCEEECCCCCCCeeChh---hhhcCccccEEEeCCCC
Confidence            9994  34445688999999999999999977765   67889999999999984

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.75  E-value=1.1e-17  Score=132.14  Aligned_cols=150  Identities=15%  Similarity=0.055  Sum_probs=115.2

Q ss_pred             ccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCcc
Q 038633           12 HLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELR   91 (176)
Q Consensus        12 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~   91 (176)
                      ..|...+.++++++.+.+. |....  .++++|++++|.+++..+..|.++++|++|++++|.+... .|..+..+++|+
T Consensus        28 ~~~~~~~~l~ls~~~L~~i-p~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~  103 (562)
T 3a79_B           28 FSNELESMVDYSNRNLTHV-PKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLE  103 (562)
T ss_dssp             -----CCEEECTTSCCCSC-CTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEE-CTTTTTTCTTCC
T ss_pred             cccCCCcEEEcCCCCCccC-CCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcC-CHHHhCCCCCCC
Confidence            3455567899999888763 33222  7889999999999887778899999999999999999865 678888999999


Q ss_pred             EEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccC--cE
Q 038633           92 YLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSL--VE  169 (176)
Q Consensus        92 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L--~~  169 (176)
                      +|++++|++. .+|..  .+++|++|++++|.++..+ .+..+.++++|++|++++|.+.+.      .+..++.|  ++
T Consensus       104 ~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~-~p~~~~~l~~L~~L~L~~n~l~~~------~~~~l~~L~L~~  173 (562)
T 3a79_B          104 YLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLP-VCKEFGNLTKLTFLGLSAAKFRQL------DLLPVAHLHLSC  173 (562)
T ss_dssp             EEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCC-CCGGGGGCTTCCEEEEECSBCCTT------TTGGGTTSCEEE
T ss_pred             EEECCCCcCC-ccCcc--ccccCCEEECCCCCccccC-chHhhcccCcccEEecCCCccccC------chhhhhhceeeE
Confidence            9999999987 67765  7899999999999885322 124578899999999999998753      33444555  88


Q ss_pred             eeCcCC
Q 038633          170 LRLPNC  175 (176)
Q Consensus       170 L~l~~n  175 (176)
                      |++++|
T Consensus       174 L~L~~n  179 (562)
T 3a79_B          174 ILLDLV  179 (562)
T ss_dssp             EEEEES
T ss_pred             EEeecc
Confidence            888876

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.74  E-value=7.2e-17  Score=109.56  Aligned_cols=133  Identities=18%  Similarity=0.067  Sum_probs=108.6

Q ss_pred             cceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEee
Q 038633           17 IFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLS   96 (176)
Q Consensus        17 l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~   96 (176)
                      .+.++++++.+.....   ....++++|++++|.+++..+..+..+++|++|++++|.+... .+..+..+++|++|+++
T Consensus         9 ~~~l~~~~~~l~~~p~---~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPT---GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TTEEECCSSCCSSCCT---TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCccCCC---CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe-ChhHccCCCccCEEECC
Confidence            4677888877765432   2236899999999999877777789999999999999999965 55567899999999999


Q ss_pred             cccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchh
Q 038633           97 GSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAA  155 (176)
Q Consensus        97 ~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  155 (176)
                      +|++.+..+..+..+++|+.|++++|.++.  .....+..+++|++|++++|.+.+..+
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKS--VPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSC--CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceE--eCHHHhcCCcccCEEEecCCCeeccCc
Confidence            999985555667899999999999999853  333446789999999999999987765

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.74  E-value=1.1e-16  Score=123.80  Aligned_cols=103  Identities=24%  Similarity=0.187  Sum_probs=42.5

Q ss_pred             cccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccE
Q 038633           13 LLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRY   92 (176)
Q Consensus        13 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~   92 (176)
                      .+++++.|++++|.+.+..+  ...+.+|++|++++|.+++.  ..+..+++|++|++++|.+... .+  +..+++|++
T Consensus       197 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~-~~--~~~l~~L~~  269 (466)
T 1o6v_A          197 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL-AP--LSGLTKLTE  269 (466)
T ss_dssp             GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-GG--GTTCTTCSE
T ss_pred             cCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccc-hh--hhcCCCCCE
Confidence            33444444444444433222  23334444444444444321  2334444444444444444422 11  344444444


Q ss_pred             EEeecccCCCCcchhccCCCCCCEEEccCCcc
Q 038633           93 LNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLD  124 (176)
Q Consensus        93 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~  124 (176)
                      |++++|.+.+ .+. +..+++|+.|++++|++
T Consensus       270 L~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~l  299 (466)
T 1o6v_A          270 LKLGANQISN-ISP-LAGLTALTNLELNENQL  299 (466)
T ss_dssp             EECCSSCCCC-CGG-GTTCTTCSEEECCSSCC
T ss_pred             EECCCCccCc-ccc-ccCCCccCeEEcCCCcc
Confidence            4444444442 221 33444444444444444

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.74  E-value=1.7e-17  Score=119.57  Aligned_cols=145  Identities=17%  Similarity=0.129  Sum_probs=120.8

Q ss_pred             cccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccE
Q 038633           13 LLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRY   92 (176)
Q Consensus        13 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~   92 (176)
                      .+..+..+++.++.+.+..  ....+.++++|++++|.++. ++ .+..+++|++|++++|.+..  .+. +..+++|++
T Consensus        17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~--~~~-l~~l~~L~~   89 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISD--LSP-LKDLTKLEE   89 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC--CGG-GTTCSSCCE
T ss_pred             HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCC--Chh-hccCCCCCE
Confidence            4566778888888876654  46778899999999999974 45 68899999999999999995  444 889999999


Q ss_pred             EEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeC
Q 038633           93 LNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRL  172 (176)
Q Consensus        93 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l  172 (176)
                      |++++|++. .+|... . ++|+.|++++|.++...    .+..+++|++|++++|.+.+.+     .++.+++|++|++
T Consensus        90 L~L~~N~l~-~l~~~~-~-~~L~~L~L~~N~l~~~~----~l~~l~~L~~L~Ls~N~i~~~~-----~l~~l~~L~~L~L  157 (263)
T 1xeu_A           90 LSVNRNRLK-NLNGIP-S-ACLSRLFLDNNELRDTD----SLIHLKNLEILSIRNNKLKSIV-----MLGFLSKLEVLDL  157 (263)
T ss_dssp             EECCSSCCS-CCTTCC-C-SSCCEEECCSSCCSBSG----GGTTCTTCCEEECTTSCCCBCG-----GGGGCTTCCEEEC
T ss_pred             EECCCCccC-CcCccc-c-CcccEEEccCCccCCCh----hhcCcccccEEECCCCcCCCCh-----HHccCCCCCEEEC
Confidence            999999997 455433 3 89999999999995432    3789999999999999998763     5788999999999


Q ss_pred             cCCC
Q 038633          173 PNCN  176 (176)
Q Consensus       173 ~~n~  176 (176)
                      ++|+
T Consensus       158 ~~N~  161 (263)
T 1xeu_A          158 HGNE  161 (263)
T ss_dssp             TTSC
T ss_pred             CCCc
Confidence            9984

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.73  E-value=3.6e-18  Score=128.29  Aligned_cols=109  Identities=18%  Similarity=0.087  Sum_probs=54.3

Q ss_pred             cccceeeccCccccCCCC----cCcccCC-cceEeecCCCCccccchhhhcCC-----CCCcEEEccCccccCCcchhhh
Q 038633           15 SRIFALSLLRCCSVGSAL----AQPFRDS-FDTYEDDAGHELGGPISPSLLQL-----KDLKYLDLSMNNFKGFKVPEFI   84 (176)
Q Consensus        15 ~~l~~l~l~~~~~~~~~~----~~~~~~~-~l~~L~l~~n~l~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~p~~~   84 (176)
                      ++++.|++++|.+.....    ..+..++ +|++|++++|.+++..+..+..+     ++|++|++++|.+... .+..+
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~-~~~~l  100 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYK-SSDEL  100 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS-CHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChH-HHHHH
Confidence            346666666666554433    2333344 56666666666655545444443     5566666666655543 33322


Q ss_pred             c----Cc-CCccEEEeecccCCCCcchhc----cC-CCCCCEEEccCCcc
Q 038633           85 G----SL-KELRYLNLSGSFFSGTIPQSL----GN-LTNLLYLDLNNFLD  124 (176)
Q Consensus        85 ~----~l-~~L~~L~l~~~~~~~~~p~~~----~~-l~~L~~L~l~~n~~  124 (176)
                      .    .+ ++|++|++++|++.+..+..+    .. .++|++|++++|.+
T Consensus       101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l  150 (362)
T 3goz_A          101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDL  150 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCG
T ss_pred             HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcC
Confidence            2    22 455556665555543333222    12 23555555555555

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.72  E-value=4.4e-18  Score=128.69  Aligned_cols=139  Identities=17%  Similarity=0.132  Sum_probs=68.1

Q ss_pred             ccCCcceEeecCCCCccc----cchhhhcCCCCCcEEEccCccccCCcchhhhc----Cc---------CCccEEEeecc
Q 038633           36 FRDSFDTYEDDAGHELGG----PISPSLLQLKDLKYLDLSMNNFKGFKVPEFIG----SL---------KELRYLNLSGS   98 (176)
Q Consensus        36 ~~~~~l~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~----~l---------~~L~~L~l~~~   98 (176)
                      ..+.+|++|++++|.+++    .++..+..+++|++|++++|.+... .+..+.    .+         ++|++|++++|
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~-~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n  169 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ-AGAKIARALQELAVNKKAKNAPPLRSIICGRN  169 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHH-HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHH-HHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence            345566666666666655    3555556666666666666665432 222222    22         56666666666


Q ss_pred             cCC-CCcc---hhccCCCCCCEEEccCCccCccc---ccccccCCCCCccEEeccCCCCCCch-hhhHHHhhccccCcEe
Q 038633           99 FFS-GTIP---QSLGNLTNLLYLDLNNFLDQSNQ---IGLGWLSGLPSLKYLNLGGADLSKDA-AYWLESISMLRSLVEL  170 (176)
Q Consensus        99 ~~~-~~~p---~~~~~l~~L~~L~l~~n~~~~~~---~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~~~~L~~L  170 (176)
                      ++. ...+   ..+..+++|+.|++++|.+....   .....+..+++|++|+|++|.+.... ...+..+..+++|++|
T Consensus       170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L  249 (386)
T 2ca6_A          170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL  249 (386)
T ss_dssp             CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred             CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence            654 2222   23445556666666666553111   11112445555555555555553110 0011134445555555


Q ss_pred             eCcCC
Q 038633          171 RLPNC  175 (176)
Q Consensus       171 ~l~~n  175 (176)
                      ++++|
T Consensus       250 ~L~~n  254 (386)
T 2ca6_A          250 GLNDC  254 (386)
T ss_dssp             ECTTC
T ss_pred             ECCCC
Confidence            55554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.72  E-value=3.1e-17  Score=111.36  Aligned_cols=137  Identities=17%  Similarity=0.051  Sum_probs=91.5

Q ss_pred             ccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCC
Q 038633           10 DLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKE   89 (176)
Q Consensus        10 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~   89 (176)
                      .+..+.+++.|++++|.+... +......++|++|++++|.+++.  ..+..+++|++|++++|.+... .+..+..+++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~   89 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRI-GEGLDQALPD   89 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEE-CSCHHHHCTT
T ss_pred             hcCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccccc-CcchhhcCCC
Confidence            445567788888888877643 32222233788888888887654  5677778888888888887733 3334467788


Q ss_pred             ccEEEeecccCCCCcch--hccCCCCCCEEEccCCccCccccc-ccccCCCCCccEEeccCCCCC
Q 038633           90 LRYLNLSGSFFSGTIPQ--SLGNLTNLLYLDLNNFLDQSNQIG-LGWLSGLPSLKYLNLGGADLS  151 (176)
Q Consensus        90 L~~L~l~~~~~~~~~p~--~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~  151 (176)
                      |++|++++|++. .+|.  .+..+++|+.+++++|++...+.. ...+..+++|++|++++|...
T Consensus        90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            888888888875 5565  677778888888888877322110 012567777888887777654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.71  E-value=1.7e-16  Score=107.69  Aligned_cols=126  Identities=22%  Similarity=0.185  Sum_probs=104.0

Q ss_pred             eEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEccC
Q 038633           42 TYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNN  121 (176)
Q Consensus        42 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~  121 (176)
                      +.++++++.++ .+|..+  .+++++|++++|.+... .+..+..+++|++|++++|++....+..++.+++|+.|++++
T Consensus        10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A           10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            56888888886 455443  47899999999999965 556678999999999999999855555678999999999999


Q ss_pred             CccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633          122 FLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN  176 (176)
Q Consensus       122 n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~  176 (176)
                      |.++.  .....+..+++|++|++++|.+.+.++.   .+..+++|++|++++|.
T Consensus        86 N~l~~--~~~~~~~~l~~L~~L~l~~N~l~~~~~~---~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A           86 NKLQS--LPNGVFDKLTQLKELALDTNQLKSVPDG---IFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             SCCCC--CCTTTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSSC
T ss_pred             CCccc--cCHHHhhCCcccCEEECcCCcceEeCHH---HhcCCcccCEEEecCCC
Confidence            99953  3334578899999999999999977764   56789999999999984

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.71  E-value=5.1e-18  Score=128.37  Aligned_cols=164  Identities=16%  Similarity=0.058  Sum_probs=83.9

Q ss_pred             ccccccceeeccCccccCC----CCcCcccCCcceEeecCCCCccccchhhhc----CC---------CCCcEEEccCcc
Q 038633           12 HLLSRIFALSLLRCCSVGS----ALAQPFRDSFDTYEDDAGHELGGPISPSLL----QL---------KDLKYLDLSMNN   74 (176)
Q Consensus        12 ~~~~~l~~l~l~~~~~~~~----~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~----~l---------~~L~~L~l~~~~   74 (176)
                      ..+++|+.|++++|.+...    .+.....+++|++|++++|.+++..+..+.    .+         ++|++|++++|.
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence            4567777777777776552    233345566677777777776543333332    22         666777777666


Q ss_pred             ccCCcch---hhhcCcCCccEEEeecccCCC-----CcchhccCCCCCCEEEccCCccCcc--cccccccCCCCCccEEe
Q 038633           75 FKGFKVP---EFIGSLKELRYLNLSGSFFSG-----TIPQSLGNLTNLLYLDLNNFLDQSN--QIGLGWLSGLPSLKYLN  144 (176)
Q Consensus        75 ~~~~~~p---~~~~~l~~L~~L~l~~~~~~~-----~~p~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~~l~~L~~L~  144 (176)
                      +.....|   ..+..+++|++|++++|++..     ..+..+..+++|+.|++++|.+...  ...+..+..+++|++|+
T Consensus       171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~  250 (386)
T 2ca6_A          171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG  250 (386)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred             CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence            6522233   344455666666666666541     1222445556666666666655210  11122344555555555


Q ss_pred             ccCCCCCCchhh-hHHHhh--ccccCcEeeCcCC
Q 038633          145 LGGADLSKDAAY-WLESIS--MLRSLVELRLPNC  175 (176)
Q Consensus       145 l~~n~l~~~~~~-~~~~l~--~~~~L~~L~l~~n  175 (176)
                      +++|.+.+.... .+..+.  .+++|+.|++++|
T Consensus       251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n  284 (386)
T 2ca6_A          251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN  284 (386)
T ss_dssp             CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS
T ss_pred             CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCC
Confidence            555555433211 111222  2455555555554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.70  E-value=5.5e-18  Score=127.26  Aligned_cols=166  Identities=19%  Similarity=0.079  Sum_probs=98.7

Q ss_pred             cccccc-ccceeeccCccccCCCCcCcccC-----CcceEeecCCCCccccchhhhcC----C-CCCcEEEccCccccCC
Q 038633           10 DLHLLS-RIFALSLLRCCSVGSALAQPFRD-----SFDTYEDDAGHELGGPISPSLLQ----L-KDLKYLDLSMNNFKGF   78 (176)
Q Consensus        10 ~~~~~~-~l~~l~l~~~~~~~~~~~~~~~~-----~~l~~L~l~~n~l~~~~~~~l~~----l-~~L~~L~l~~~~~~~~   78 (176)
                      .+..++ +++.|++++|.+....+..+...     .+|++|++++|.+++..+..+..    + ++|++|++++|.+...
T Consensus        45 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  124 (362)
T 3goz_A           45 AFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK  124 (362)
T ss_dssp             HHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred             HHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH
Confidence            344455 78888888887766554444332     67888888888877666654333    3 7788888888877754


Q ss_pred             cchhhhc----C-cCCccEEEeecccCCCCc----chhccCCC-CCCEEEccCCccCccc--ccccccCCC-CCccEEec
Q 038633           79 KVPEFIG----S-LKELRYLNLSGSFFSGTI----PQSLGNLT-NLLYLDLNNFLDQSNQ--IGLGWLSGL-PSLKYLNL  145 (176)
Q Consensus        79 ~~p~~~~----~-l~~L~~L~l~~~~~~~~~----p~~~~~l~-~L~~L~l~~n~~~~~~--~~~~~~~~l-~~L~~L~l  145 (176)
                       .+..+.    . ..+|++|++++|++.+..    +..+...+ +|+.|++++|.+....  .....+..+ ++|++|++
T Consensus       125 -~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L  203 (362)
T 3goz_A          125 -SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDL  203 (362)
T ss_dssp             -CHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred             -HHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEEC
Confidence             444433    2 257788888877776432    23334444 7777777777763211  111123344 47777777


Q ss_pred             cCCCCCCchhh-hHHHhhc-cccCcEeeCcCCC
Q 038633          146 GGADLSKDAAY-WLESISM-LRSLVELRLPNCN  176 (176)
Q Consensus       146 ~~n~l~~~~~~-~~~~l~~-~~~L~~L~l~~n~  176 (176)
                      ++|.+.+.... ....+.. .++|++|++++|+
T Consensus       204 s~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  236 (362)
T 3goz_A          204 SANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC  236 (362)
T ss_dssp             TTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred             CCCCCChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence            77776653222 1123444 2477777777663

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.70  E-value=4.2e-17  Score=110.70  Aligned_cols=137  Identities=21%  Similarity=0.129  Sum_probs=108.4

Q ss_pred             CcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcc-hhccCCC
Q 038633           34 QPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIP-QSLGNLT  112 (176)
Q Consensus        34 ~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~  112 (176)
                      .+....+++.|++++|.++. ++......++|++|++++|.+..  + ..+..+++|++|++++|++. ..| ..+..++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~--~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~   88 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRK--L-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALP   88 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCE--E-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCT
T ss_pred             hcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCc--c-cccccCCCCCEEECCCCccc-ccCcchhhcCC
Confidence            35667789999999999974 45433344599999999999983  4 67888999999999999998 555 4458899


Q ss_pred             CCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633          113 NLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN  176 (176)
Q Consensus       113 ~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~  176 (176)
                      +|+.|++++|.+...+. ...+..+++|++|++++|.+...+......++.+++|+.|++++|.
T Consensus        89 ~L~~L~L~~N~i~~~~~-~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           89 DLTELILTNNSLVELGD-LDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             TCCEEECCSCCCCCGGG-GGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             CCCEEECCCCcCCcchh-hHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            99999999999954332 1247789999999999999986544222347889999999998874

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.70  E-value=2.5e-16  Score=121.75  Aligned_cols=148  Identities=15%  Similarity=0.070  Sum_probs=86.0

Q ss_pred             ccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCC
Q 038633           10 DLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKE   89 (176)
Q Consensus        10 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~   89 (176)
                      ++..+++++.|++++|.+.+. + .+..+.+|++|++++|.+++. +  +..+++|++|++++|.+.+  .+  +..+++
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~--~~--~~~l~~  107 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN--LD--VTPLTK  107 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC--CC--CTTCTT
T ss_pred             ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce--ee--cCCCCc
Confidence            445566777777777766654 2 456666777777777776653 2  5666777777777777663  32  556667


Q ss_pred             ccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccc-----------------cccccCCCCCccEEeccCCCCCC
Q 038633           90 LRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQI-----------------GLGWLSGLPSLKYLNLGGADLSK  152 (176)
Q Consensus        90 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-----------------~~~~~~~l~~L~~L~l~~n~l~~  152 (176)
                      |++|++++|++.+ +|  ++.+++|++|++++|.++....                 ..-.+..+++|++|++++|.+.+
T Consensus       108 L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~  184 (457)
T 3bz5_A          108 LTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE  184 (457)
T ss_dssp             CCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC
T ss_pred             CCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce
Confidence            7777777776653 33  5566666666666666632110                 00013444555555555555554


Q ss_pred             chhhhHHHhhccccCcEeeCcCC
Q 038633          153 DAAYWLESISMLRSLVELRLPNC  175 (176)
Q Consensus       153 ~~~~~~~~l~~~~~L~~L~l~~n  175 (176)
                      .+      ++.+++|+.|++++|
T Consensus       185 l~------l~~l~~L~~L~l~~N  201 (457)
T 3bz5_A          185 LD------VSQNKLLNRLNCDTN  201 (457)
T ss_dssp             CC------CTTCTTCCEEECCSS
T ss_pred             ec------cccCCCCCEEECcCC
Confidence            31      344556666666555

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.69  E-value=8.1e-16  Score=118.86  Aligned_cols=146  Identities=18%  Similarity=0.125  Sum_probs=101.6

Q ss_pred             cccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcC
Q 038633            9 SDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLK   88 (176)
Q Consensus         9 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~   88 (176)
                      +.+..+++++.|++++|.+.+.   .+..+.+|++|++++|.+++. +  +..+++|++|++++|.+..  +|  +..++
T Consensus        58 ~~l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~--l~--~~~l~  127 (457)
T 3bz5_A           58 TGIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK--LD--VSQNP  127 (457)
T ss_dssp             TTGGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC--CC--CTTCT
T ss_pred             hhhcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe--ec--CCCCC
Confidence            3566677788888888777664   256667777777777777653 2  6667777777777777663  33  55666


Q ss_pred             CccEEEeecccCCCCcc--------------------hhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCC
Q 038633           89 ELRYLNLSGSFFSGTIP--------------------QSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGA  148 (176)
Q Consensus        89 ~L~~L~l~~~~~~~~~p--------------------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n  148 (176)
                      +|++|++++|++.+ .+                    -.++.+++|+.|++++|.++..  .   +..+++|+.|++++|
T Consensus       128 ~L~~L~l~~N~l~~-l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l--~---l~~l~~L~~L~l~~N  201 (457)
T 3bz5_A          128 LLTYLNCARNTLTE-IDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL--D---VSQNKLLNRLNCDTN  201 (457)
T ss_dssp             TCCEEECTTSCCSC-CCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCC--C---CTTCTTCCEEECCSS
T ss_pred             cCCEEECCCCccce-eccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCcccee--c---cccCCCCCEEECcCC
Confidence            66666666666653 11                    0244556677777777766432  1   678899999999999


Q ss_pred             CCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633          149 DLSKDAAYWLESISMLRSLVELRLPNCN  176 (176)
Q Consensus       149 ~l~~~~~~~~~~l~~~~~L~~L~l~~n~  176 (176)
                      .+.+.      .++.+++|+.|++++|+
T Consensus       202 ~l~~~------~l~~l~~L~~L~Ls~N~  223 (457)
T 3bz5_A          202 NITKL------DLNQNIQLTFLDCSSNK  223 (457)
T ss_dssp             CCSCC------CCTTCTTCSEEECCSSC
T ss_pred             cCCee------ccccCCCCCEEECcCCc
Confidence            99865      35778999999999984

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.68  E-value=1.5e-16  Score=125.88  Aligned_cols=126  Identities=26%  Similarity=0.238  Sum_probs=104.4

Q ss_pred             cceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEc
Q 038633           40 FDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDL  119 (176)
Q Consensus        40 ~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l  119 (176)
                      .++.|++++|.+++ +|. +..+++|++|++++|.+.  .+|..++.+++|++|++++|++. .+| .++.+++|+.|++
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~-~lp-~l~~l~~L~~L~L  515 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLL  515 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEEC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCCC-CCc-ccCCCCCCcEEEC
Confidence            47889999999975 566 889999999999999999  58889999999999999999998 467 7889999999999


Q ss_pred             cCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeC
Q 038633          120 NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRL  172 (176)
Q Consensus       120 ~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l  172 (176)
                      ++|.++... .+..+..+++|+.|++++|.+.+.++.....+..+++|+.|++
T Consensus       516 s~N~l~~~~-~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          516 CNNRLQQSA-AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CSSCCCSSS-TTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCC-CcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            999985331 1445788999999999999998776643334566889998874

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.68  E-value=2.9e-17  Score=133.29  Aligned_cols=120  Identities=23%  Similarity=0.279  Sum_probs=100.7

Q ss_pred             CcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCC
Q 038633           32 LAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNL  111 (176)
Q Consensus        32 ~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l  111 (176)
                      +..+..+..|+.|+|++|.+. .+|..+..+++|++|+|++|.++  .+|..+..+++|++|++++|.+. .+|..++.+
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  292 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC  292 (727)
T ss_dssp             -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred             hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence            445677888999999999996 67777779999999999999999  58988999999999999999998 789889999


Q ss_pred             CCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhH
Q 038633          112 TNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWL  158 (176)
Q Consensus       112 ~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  158 (176)
                      ++|++|++++|.+...   +..+..+++|++|+|++|.+.+.++..+
T Consensus       293 ~~L~~L~L~~N~l~~l---p~~~~~l~~L~~L~L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          293 FQLKYFYFFDNMVTTL---PWEFGNLCNLQFLGVEGNPLEKQFLKIL  336 (727)
T ss_dssp             TTCSEEECCSSCCCCC---CSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred             CCCCEEECCCCCCCcc---ChhhhcCCCccEEeCCCCccCCCChHHH
Confidence            9999999999988533   3348899999999999999998877643

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.66  E-value=1.6e-15  Score=119.93  Aligned_cols=136  Identities=15%  Similarity=0.079  Sum_probs=84.0

Q ss_pred             ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEE
Q 038633           14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYL   93 (176)
Q Consensus        14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L   93 (176)
                      +++|+.|++++|.+.+ ++. +..  +|++|++++|.+++ +|.   .+++|++|++++|.++.  +|.   .+++|++|
T Consensus        99 l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~--lp~---~l~~L~~L  165 (571)
T 3cvr_A           99 PASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM--LPE---LPTSLEVL  165 (571)
T ss_dssp             CTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC--CCC---CCTTCCEE
T ss_pred             cCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc--CCC---cCCCcCEE
Confidence            3455555555555544 222 211  55666666666654 343   45667777777776663  443   45677777


Q ss_pred             EeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCc-------cEEeccCCCCCCchhhhHHHhhcccc
Q 038633           94 NLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSL-------KYLNLGGADLSKDAAYWLESISMLRS  166 (176)
Q Consensus        94 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L-------~~L~l~~n~l~~~~~~~~~~l~~~~~  166 (176)
                      ++++|++. .+|. +.  ++|+.|++++|.++..+.    +..  +|       +.|++++|.+...+.    .+..+++
T Consensus       166 ~Ls~N~L~-~lp~-l~--~~L~~L~Ls~N~L~~lp~----~~~--~L~~~~~~L~~L~Ls~N~l~~lp~----~l~~l~~  231 (571)
T 3cvr_A          166 SVRNNQLT-FLPE-LP--ESLEALDVSTNLLESLPA----VPV--RNHHSEETEIFFRCRENRITHIPE----NILSLDP  231 (571)
T ss_dssp             ECCSSCCS-CCCC-CC--TTCCEEECCSSCCSSCCC----CC----------CCEEEECCSSCCCCCCG----GGGGSCT
T ss_pred             ECCCCCCC-Ccch-hh--CCCCEEECcCCCCCchhh----HHH--hhhcccccceEEecCCCcceecCH----HHhcCCC
Confidence            77777776 3565 44  778888888887753222    222  56       889999998885543    5566899


Q ss_pred             CcEeeCcCCC
Q 038633          167 LVELRLPNCN  176 (176)
Q Consensus       167 L~~L~l~~n~  176 (176)
                      |+.|++++|+
T Consensus       232 L~~L~L~~N~  241 (571)
T 3cvr_A          232 TCTIILEDNP  241 (571)
T ss_dssp             TEEEECCSSS
T ss_pred             CCEEEeeCCc
Confidence            9999999884

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.66  E-value=1.3e-18  Score=120.39  Aligned_cols=155  Identities=21%  Similarity=0.136  Sum_probs=123.9

Q ss_pred             ccccccccceeeccCccccCCCCc------CcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhh
Q 038633           10 DLHLLSRIFALSLLRCCSVGSALA------QPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEF   83 (176)
Q Consensus        10 ~~~~~~~l~~l~l~~~~~~~~~~~------~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~   83 (176)
                      .+...+.++.+++..+.+.+..+.      .+..+.+|++|++++|.+++ +| .+..+++|++|++++|.+.  .+|..
T Consensus        13 ~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~--~l~~~   88 (198)
T 1ds9_A           13 IFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK--KIENL   88 (198)
T ss_dssp             HHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC--SCSSH
T ss_pred             HHHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc--cccch
Confidence            344566778888888887766555      66788899999999999976 66 8889999999999999999  57888


Q ss_pred             hcCcCCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhh-------
Q 038633           84 IGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAY-------  156 (176)
Q Consensus        84 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------  156 (176)
                      +..+++|++|++++|++. ..| .+..+++|+.|++++|.+..... ...+..+++|++|++++|.+.+.++.       
T Consensus        89 ~~~~~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~l~~N~i~~~~~-~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~  165 (198)
T 1ds9_A           89 DAVADTLEELWISYNQIA-SLS-GIEKLVNLRVLYMSNNKITNWGE-IDKLAALDKLEDLLLAGNPLYNDYKENNATSEY  165 (198)
T ss_dssp             HHHHHHCSEEEEEEEECC-CHH-HHHHHHHSSEEEESEEECCCHHH-HHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHH
T ss_pred             hhcCCcCCEEECcCCcCC-cCC-ccccCCCCCEEECCCCcCCchhH-HHHHhcCCCCCEEEecCCccccccccccchHHH
Confidence            878899999999999998 455 67788999999999999854322 13478899999999999998765432       


Q ss_pred             hHHHhhccccCcEee
Q 038633          157 WLESISMLRSLVELR  171 (176)
Q Consensus       157 ~~~~l~~~~~L~~L~  171 (176)
                      ....+..+++|+.|+
T Consensus       166 ~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          166 RIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHHHCSSCSEEC
T ss_pred             HHHHHHhCCCcEEEC
Confidence            112467889999887

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.66  E-value=2.4e-17  Score=127.02  Aligned_cols=164  Identities=18%  Similarity=0.019  Sum_probs=105.4

Q ss_pred             ccccccceeeccCccccCCC-----CcCcccCCcceEeecCCCCcccc----chhhhcCCCCCcEEEccCccccCCcchh
Q 038633           12 HLLSRIFALSLLRCCSVGSA-----LAQPFRDSFDTYEDDAGHELGGP----ISPSLLQLKDLKYLDLSMNNFKGFKVPE   82 (176)
Q Consensus        12 ~~~~~l~~l~l~~~~~~~~~-----~~~~~~~~~l~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~p~   82 (176)
                      ..+++++.|++++|.+....     +.......+|++|++++|.+++.    ++..+..+++|++|++++|.+... .+.
T Consensus       224 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~-~~~  302 (461)
T 1z7x_W          224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE-GAR  302 (461)
T ss_dssp             HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHH-HHH
T ss_pred             HhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchH-HHH
Confidence            34567777777777664321     11122466778888888877654    566666788888888888877643 443


Q ss_pred             hhcC-----cCCccEEEeecccCCCC----cchhccCCCCCCEEEccCCccCccc--ccccccC-CCCCccEEeccCCCC
Q 038633           83 FIGS-----LKELRYLNLSGSFFSGT----IPQSLGNLTNLLYLDLNNFLDQSNQ--IGLGWLS-GLPSLKYLNLGGADL  150 (176)
Q Consensus        83 ~~~~-----l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~-~l~~L~~L~l~~n~l  150 (176)
                      .+..     .++|++|++++|.+...    ++..+..+++|+.|++++|.+....  .....+. ..++|++|++++|.+
T Consensus       303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i  382 (461)
T 1z7x_W          303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV  382 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence            3332     25788888888887643    3555667788888888888773211  1111122 267889999999988


Q ss_pred             CCchh-hhHHHhhccccCcEeeCcCCC
Q 038633          151 SKDAA-YWLESISMLRSLVELRLPNCN  176 (176)
Q Consensus       151 ~~~~~-~~~~~l~~~~~L~~L~l~~n~  176 (176)
                      .+... ..+..+..+++|++|++++|+
T Consensus       383 ~~~~~~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          383 SDSSCSSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             CHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             ChhhHHHHHHHHHhCCCccEEECCCCC
Confidence            75211 112266778899999998874

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.65  E-value=2.2e-16  Score=128.18  Aligned_cols=150  Identities=19%  Similarity=0.101  Sum_probs=94.8

Q ss_pred             cccceeeccCccccCCCCcCcccCCcc-----eEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCC
Q 038633           15 SRIFALSLLRCCSVGSALAQPFRDSFD-----TYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKE   89 (176)
Q Consensus        15 ~~l~~l~l~~~~~~~~~~~~~~~~~~l-----~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~   89 (176)
                      +.++.|++.++.+... +........|     ..+++..|.+. ..+..+..++.|+.|++++|.+.  .+|..+..+++
T Consensus       173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~--~l~~~~~~l~~  248 (727)
T 4b8c_D          173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF--NISANIFKYDF  248 (727)
T ss_dssp             ---------------------------------------------------CCCCCCEEECTTSCCS--CCCGGGGGCCS
T ss_pred             CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC--CCChhhcCCCC
Confidence            4577788877766553 1211121112     22233334332 45777889999999999999998  58888889999


Q ss_pred             ccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcE
Q 038633           90 LRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVE  169 (176)
Q Consensus        90 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~  169 (176)
                      |++|++++|.+. .+|..++.+++|+.|++++|.++..   +..+..+++|++|+|++|.+... |.   .++.+++|+.
T Consensus       249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l---p~~~~~l~~L~~L~L~~N~l~~l-p~---~~~~l~~L~~  320 (727)
T 4b8c_D          249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSL---PAELGSCFQLKYFYFFDNMVTTL-PW---EFGNLCNLQF  320 (727)
T ss_dssp             CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSC---CSSGGGGTTCSEEECCSSCCCCC-CS---STTSCTTCCC
T ss_pred             CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCcc---ChhhcCCCCCCEEECCCCCCCcc-Ch---hhhcCCCccE
Confidence            999999999998 8899999999999999999999632   44588999999999999999754 54   6889999999


Q ss_pred             eeCcCCC
Q 038633          170 LRLPNCN  176 (176)
Q Consensus       170 L~l~~n~  176 (176)
                      |+|++|+
T Consensus       321 L~L~~N~  327 (727)
T 4b8c_D          321 LGVEGNP  327 (727)
T ss_dssp             EECTTSC
T ss_pred             EeCCCCc
Confidence            9999984

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.62  E-value=2.9e-15  Score=118.53  Aligned_cols=124  Identities=20%  Similarity=0.088  Sum_probs=105.4

Q ss_pred             ccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEe
Q 038633           16 RIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNL   95 (176)
Q Consensus        16 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l   95 (176)
                      .++.|++++|.+.+. +. +..+.+|+.|++++|.++ .+|..+..+++|++|++++|.++  .+| .++.+++|++|++
T Consensus       442 ~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~--~lp-~l~~l~~L~~L~L  515 (567)
T 1dce_A          442 DVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE--NVD-GVANLPRLQELLL  515 (567)
T ss_dssp             TCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC--CCG-GGTTCSSCCEEEC
T ss_pred             CceEEEecCCCCCCC-cC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC--CCc-ccCCCCCCcEEEC
Confidence            588999999998874 44 888899999999999997 78999999999999999999999  467 8899999999999


Q ss_pred             ecccCCCCc-chhccCCCCCCEEEccCCccCccccc-ccccCCCCCccEEec
Q 038633           96 SGSFFSGTI-PQSLGNLTNLLYLDLNNFLDQSNQIG-LGWLSGLPSLKYLNL  145 (176)
Q Consensus        96 ~~~~~~~~~-p~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~l~~L~~L~l  145 (176)
                      ++|++.+.. |..++.+++|+.|++++|+++..+.. ...+..+++|+.|++
T Consensus       516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            999998555 88999999999999999999543322 222445888998864

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.62  E-value=6e-15  Score=99.57  Aligned_cols=105  Identities=14%  Similarity=0.022  Sum_probs=72.8

Q ss_pred             cceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEee
Q 038633           17 IFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLS   96 (176)
Q Consensus        17 l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~   96 (176)
                      .+.++++++.+...... .  ...+++|++++|.+++..|..|.++++|++|++++|.+... .+..+..+++|++|+++
T Consensus        11 ~~~l~~s~n~l~~ip~~-~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTG-I--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTSCCSSCCSC-C--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcCccCcc-C--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCcc-ChhhccCCCCCCEEECC
Confidence            35677777766553322 2  26677788888887776677777778888888888877754 44456677778888888


Q ss_pred             cccCCCCcchhccCCCCCCEEEccCCccC
Q 038633           97 GSFFSGTIPQSLGNLTNLLYLDLNNFLDQ  125 (176)
Q Consensus        97 ~~~~~~~~p~~~~~l~~L~~L~l~~n~~~  125 (176)
                      +|++.+..+..+..+++|+.|++++|++.
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            88777444445777777777777777763

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.61  E-value=5.5e-16  Score=119.42  Aligned_cols=164  Identities=16%  Similarity=0.045  Sum_probs=92.2

Q ss_pred             ccccccceeeccCccccCCCCcC-----cccCCcceEeecCCCCcccc----chhhhcCCCCCcEEEccCccccCCcchh
Q 038633           12 HLLSRIFALSLLRCCSVGSALAQ-----PFRDSFDTYEDDAGHELGGP----ISPSLLQLKDLKYLDLSMNNFKGFKVPE   82 (176)
Q Consensus        12 ~~~~~l~~l~l~~~~~~~~~~~~-----~~~~~~l~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~p~   82 (176)
                      ..+++++.|++++|.+.......     .....+|++|++++|.+++.    ++..+..+++|++|++++|.+... .+.
T Consensus       110 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~-~~~  188 (461)
T 1z7x_W          110 RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA-GVR  188 (461)
T ss_dssp             TSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHH-HHH
T ss_pred             ccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchH-HHH
Confidence            34555666666665553321111     11133466666666666543    244455567777777777766543 333


Q ss_pred             hhc-----CcCCccEEEeecccCCCC----cchhccCCCCCCEEEccCCccCcccc--c-ccccCCCCCccEEeccCCCC
Q 038633           83 FIG-----SLKELRYLNLSGSFFSGT----IPQSLGNLTNLLYLDLNNFLDQSNQI--G-LGWLSGLPSLKYLNLGGADL  150 (176)
Q Consensus        83 ~~~-----~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~n~~~~~~~--~-~~~~~~l~~L~~L~l~~n~l  150 (176)
                      .+.     .+++|++|++++|.+...    ++..+..+++|++|++++|.+.....  . ...+..+++|++|++++|.+
T Consensus       189 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l  268 (461)
T 1z7x_W          189 VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI  268 (461)
T ss_dssp             HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCC
Confidence            332     245777777777777642    35556667778888888777632110  0 11123567788888888877


Q ss_pred             CCchhh-hHHHhhccccCcEeeCcCCC
Q 038633          151 SKDAAY-WLESISMLRSLVELRLPNCN  176 (176)
Q Consensus       151 ~~~~~~-~~~~l~~~~~L~~L~l~~n~  176 (176)
                      .+.... ....+..+++|++|++++|+
T Consensus       269 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~  295 (461)
T 1z7x_W          269 TAKGCGDLCRVLRAKESLKELSLAGNE  295 (461)
T ss_dssp             CHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred             CHHHHHHHHHHHhhCCCcceEECCCCC
Confidence            653211 12245667778888877763

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.60  E-value=2.4e-17  Score=113.96  Aligned_cols=128  Identities=23%  Similarity=0.243  Sum_probs=105.6

Q ss_pred             CcceEeecCCCCccccchh------hhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCC
Q 038633           39 SFDTYEDDAGHELGGPISP------SLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLT  112 (176)
Q Consensus        39 ~~l~~L~l~~n~l~~~~~~------~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~  112 (176)
                      ..++.++++.+.+++..|.      .+..+++|++|++++|.+.  .+| .+..+++|++|++++|.+. .+|..+..++
T Consensus        18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~--~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~   93 (198)
T 1ds9_A           18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE--KIS-SLSGMENLRILSLGRNLIK-KIENLDAVAD   93 (198)
T ss_dssp             TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES--CCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred             ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc--ccc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence            3455566666666665555      8999999999999999999  466 8888999999999999998 7788777789


Q ss_pred             CCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633          113 NLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN  176 (176)
Q Consensus       113 ~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~  176 (176)
                      +|+.|++++|.++..+    .+..+++|++|++++|.+.+.+..  ..+..+++|++|++++|+
T Consensus        94 ~L~~L~L~~N~l~~l~----~~~~l~~L~~L~l~~N~i~~~~~~--~~l~~l~~L~~L~l~~N~  151 (198)
T 1ds9_A           94 TLEELWISYNQIASLS----GIEKLVNLRVLYMSNNKITNWGEI--DKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             HCSEEEEEEEECCCHH----HHHHHHHSSEEEESEEECCCHHHH--HHHTTTTTCSEEEECSCH
T ss_pred             cCCEEECcCCcCCcCC----ccccCCCCCEEECCCCcCCchhHH--HHHhcCCCCCEEEecCCc
Confidence            9999999999985432    377889999999999999865541  367889999999999883

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.60  E-value=1.4e-14  Score=111.86  Aligned_cols=77  Identities=21%  Similarity=0.295  Sum_probs=44.5

Q ss_pred             CcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEE
Q 038633           39 SFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLD  118 (176)
Q Consensus        39 ~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~  118 (176)
                      .+|++|++++|.+++ +| .+.++++|++|++++|.+.+  +|..   ..+|++|++++|++. ..| .++.+++|+.|+
T Consensus       131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~--lp~~---~~~L~~L~L~~n~l~-~l~-~~~~l~~L~~L~  201 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK--LPDL---PPSLEFIAAGNNQLE-ELP-ELQNLPFLTAIY  201 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC--CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEE
T ss_pred             CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc--cCCC---cccccEEECcCCcCC-cCc-cccCCCCCCEEE
Confidence            456666666666654 44 46666666666666666662  3332   235666666666665 344 355666666666


Q ss_pred             ccCCcc
Q 038633          119 LNNFLD  124 (176)
Q Consensus       119 l~~n~~  124 (176)
                      +++|.+
T Consensus       202 l~~N~l  207 (454)
T 1jl5_A          202 ADNNSL  207 (454)
T ss_dssp             CCSSCC
T ss_pred             CCCCcC
Confidence            666555

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.59  E-value=1.3e-14  Score=114.70  Aligned_cols=115  Identities=19%  Similarity=0.161  Sum_probs=59.8

Q ss_pred             ccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEe
Q 038633           16 RIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNL   95 (176)
Q Consensus        16 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l   95 (176)
                      +++.|++++|.+.+ ++...  ..+|++|++++|.++ .+|   ..+++|++|++++|.++.  +|. +..  +|++|++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~--ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST--LPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC--CCC-CCT--TCCEEEC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC--cch-hhc--CCCEEEC
Confidence            56666666666655 22222  245666666666665 344   335666666666666652  344 332  5666666


Q ss_pred             ecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCC
Q 038633           96 SGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSK  152 (176)
Q Consensus        96 ~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  152 (176)
                      ++|++. .+|.   .+++|+.|++++|.++..+.      .+++|++|++++|.+.+
T Consensus       128 s~N~l~-~lp~---~l~~L~~L~Ls~N~l~~lp~------~l~~L~~L~Ls~N~L~~  174 (571)
T 3cvr_A          128 DNNQLT-MLPE---LPALLEYINADNNQLTMLPE------LPTSLEVLSVRNNQLTF  174 (571)
T ss_dssp             CSSCCS-CCCC---CCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSC
T ss_pred             CCCcCC-CCCC---cCccccEEeCCCCccCcCCC------cCCCcCEEECCCCCCCC
Confidence            666555 2443   34555555555555532111      23445555555555443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.59  E-value=8.7e-15  Score=98.76  Aligned_cols=108  Identities=23%  Similarity=0.222  Sum_probs=91.1

Q ss_pred             ceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEcc
Q 038633           41 DTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLN  120 (176)
Q Consensus        41 l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~  120 (176)
                      .+.+++++|.++ .+|..+  .+.+++|++++|.+... .|..+..+++|++|++++|++.+..+..+..+++|+.|+++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKL-EPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCcc-ChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            357899999996 467655  48899999999999976 78889999999999999999985555667899999999999


Q ss_pred             CCccCcccccccccCCCCCccEEeccCCCCCCch
Q 038633          121 NFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDA  154 (176)
Q Consensus       121 ~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  154 (176)
                      +|+++.  .....+..+++|++|++++|.+....
T Consensus        87 ~N~l~~--~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           87 DNQLKS--IPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             SSCCCC--CCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             CCccCE--eCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            999943  33445889999999999999997654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.59  E-value=2.3e-14  Score=110.68  Aligned_cols=78  Identities=13%  Similarity=0.072  Sum_probs=38.9

Q ss_pred             cccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEE
Q 038633           15 SRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLN   94 (176)
Q Consensus        15 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~   94 (176)
                      ++++.|++++|.+.+ .+ .+..+.+|++|++++|.+++ +|..   ..+|++|++++|.+.+  +| .+..+++|++|+
T Consensus       131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~--l~-~~~~l~~L~~L~  201 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE--LP-ELQNLPFLTAIY  201 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS--CC-CCTTCTTCCEEE
T ss_pred             CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc--Cc-cccCCCCCCEEE
Confidence            355556666555554 22 35555556666666665543 3322   2355555555555542  33 344455555555


Q ss_pred             eecccCC
Q 038633           95 LSGSFFS  101 (176)
Q Consensus        95 l~~~~~~  101 (176)
                      +++|++.
T Consensus       202 l~~N~l~  208 (454)
T 1jl5_A          202 ADNNSLK  208 (454)
T ss_dssp             CCSSCCS
T ss_pred             CCCCcCC
Confidence            5555444

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.58  E-value=2.1e-14  Score=97.24  Aligned_cols=104  Identities=13%  Similarity=0.035  Sum_probs=70.7

Q ss_pred             ceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeec
Q 038633           18 FALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSG   97 (176)
Q Consensus        18 ~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~   97 (176)
                      +.++++++.+... |...  ..++++|++++|.+++..|..|..+++|++|++++|.+... .+..+..+++|++|++++
T Consensus        15 ~~l~~~~n~l~~i-P~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLASV-PAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCCcc-CCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECCC
Confidence            5677777666443 2222  26677778888877776677777777788888888877743 334456777788888887


Q ss_pred             ccCCCCcchhccCCCCCCEEEccCCccC
Q 038633           98 SFFSGTIPQSLGNLTNLLYLDLNNFLDQ  125 (176)
Q Consensus        98 ~~~~~~~p~~~~~l~~L~~L~l~~n~~~  125 (176)
                      |++....+..+..+++|++|++.+|++.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcc
Confidence            7777333334677777777777777764

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.58  E-value=1.4e-14  Score=98.18  Aligned_cols=108  Identities=22%  Similarity=0.223  Sum_probs=90.3

Q ss_pred             eEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEccC
Q 038633           42 TYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNN  121 (176)
Q Consensus        42 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~  121 (176)
                      +.+++++|.++ .+|..+  .++|++|++++|.+... .|..+..+++|++|++++|++.+..+..+..+++|+.|++++
T Consensus        15 ~~l~~~~n~l~-~iP~~~--~~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGI--PTDKQRLWLNNNQITKL-EPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCC-ccCCCc--CCCCcEEEeCCCCcccc-CHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            57899999995 677665  38999999999999976 788899999999999999999854444578999999999999


Q ss_pred             CccCcccccccccCCCCCccEEeccCCCCCCchh
Q 038633          122 FLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAA  155 (176)
Q Consensus       122 n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  155 (176)
                      |.++.  .....+..+++|++|++++|.+.....
T Consensus        91 N~l~~--l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           91 NHLKS--IPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             SCCCC--CCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             Cccce--eCHHHhccccCCCEEEeCCCCcccccc
Confidence            99953  333458899999999999999985543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.58  E-value=3.9e-14  Score=113.09  Aligned_cols=75  Identities=20%  Similarity=0.109  Sum_probs=53.1

Q ss_pred             CCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccC
Q 038633           88 KELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSL  167 (176)
Q Consensus        88 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L  167 (176)
                      ++|+.|++++|++. .+|   ..+++|+.|++++|.++..+.      .+++|+.|++++|.+... |.   .+..+++|
T Consensus       221 ~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L~~lp~------~~~~L~~L~Ls~N~L~~l-p~---~l~~l~~L  286 (622)
T 3g06_A          221 SGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLTSLPM------LPSGLLSLSVYRNQLTRL-PE---SLIHLSSE  286 (622)
T ss_dssp             TTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCCSC-CG---GGGGSCTT
T ss_pred             CCCCEEEccCCccC-cCC---CCCCcCcEEECCCCCCCcCCc------ccccCcEEeCCCCCCCcC-CH---HHhhcccc
Confidence            45666666666665 344   345677777777777642221      567899999999998854 44   67889999


Q ss_pred             cEeeCcCCC
Q 038633          168 VELRLPNCN  176 (176)
Q Consensus       168 ~~L~l~~n~  176 (176)
                      +.|++++|.
T Consensus       287 ~~L~L~~N~  295 (622)
T 3g06_A          287 TTVNLEGNP  295 (622)
T ss_dssp             CEEECCSCC
T ss_pred             CEEEecCCC
Confidence            999999984

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.57  E-value=1.4e-14  Score=108.32  Aligned_cols=156  Identities=15%  Similarity=-0.041  Sum_probs=101.6

Q ss_pred             ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccch-hhhcCCCCCcE-EEccCccccCCcchhhhcCcCCcc
Q 038633           14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPIS-PSLLQLKDLKY-LDLSMNNFKGFKVPEFIGSLKELR   91 (176)
Q Consensus        14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~-~~l~~l~~L~~-L~l~~~~~~~~~~p~~~~~l~~L~   91 (176)
                      .++++.|++++|.|....+..+..+.+|++|++++|.+.+.++ .+|.+++++++ +.+++|.+... .|..+..+++|+
T Consensus        29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l-~~~~f~~l~~L~  107 (350)
T 4ay9_X           29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI-NPEAFQNLPNLQ  107 (350)
T ss_dssp             CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE-CTTSBCCCTTCC
T ss_pred             CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc-Cchhhhhccccc
Confidence            3578899999998887666678888999999999998765554 45778887765 45566777754 566778888888


Q ss_pred             EEEeecccCCCCcchhccCC--------------------------CCCCEEEccCCccCcccccccccCCCCCccEEec
Q 038633           92 YLNLSGSFFSGTIPQSLGNL--------------------------TNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNL  145 (176)
Q Consensus        92 ~L~l~~~~~~~~~p~~~~~l--------------------------~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l  145 (176)
                      +|++++|++....+..+...                          ..++.|++++|.++....  . .....+|+.+++
T Consensus       108 ~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~--~-~f~~~~L~~l~l  184 (350)
T 4ay9_X          108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN--S-AFNGTQLDELNL  184 (350)
T ss_dssp             EEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECT--T-SSTTEEEEEEEC
T ss_pred             cccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCCh--h-hccccchhHHhh
Confidence            88888888763222222122                          235556666666532211  1 223345666666


Q ss_pred             cC-CCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633          146 GG-ADLSKDAAYWLESISMLRSLVELRLPNCN  176 (176)
Q Consensus       146 ~~-n~l~~~~~~~~~~l~~~~~L~~L~l~~n~  176 (176)
                      .+ |.+...++.   .++.+++|++|++++|+
T Consensus       185 ~~~n~l~~i~~~---~f~~l~~L~~LdLs~N~  213 (350)
T 4ay9_X          185 SDNNNLEELPND---VFHGASGPVILDISRTR  213 (350)
T ss_dssp             TTCTTCCCCCTT---TTTTEECCSEEECTTSC
T ss_pred             ccCCcccCCCHH---HhccCcccchhhcCCCC
Confidence            53 455444443   56677778888877764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.56  E-value=1e-14  Score=108.96  Aligned_cols=104  Identities=14%  Similarity=0.029  Sum_probs=80.0

Q ss_pred             ceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchh-hhcCcCCccE-EEe
Q 038633           18 FALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPE-FIGSLKELRY-LNL   95 (176)
Q Consensus        18 ~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~-~~~~l~~L~~-L~l   95 (176)
                      ++++.+++.+... |...  ..++++|++++|.|+..-+.+|.++++|++|++++|.+... +|. .+..++++++ +.+
T Consensus        12 ~~v~C~~~~Lt~i-P~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~-i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVTEI-PSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV-IEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCCSC-CTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCE-ECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCCcc-CcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCc-cChhHhhcchhhhhhhcc
Confidence            4556666555543 3322  35789999999999866667899999999999999998754 554 5678888776 556


Q ss_pred             ecccCCCCcchhccCCCCCCEEEccCCccC
Q 038633           96 SGSFFSGTIPQSLGNLTNLLYLDLNNFLDQ  125 (176)
Q Consensus        96 ~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~  125 (176)
                      ..|++....|..++.+++|+++++++|+++
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~  117 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIK  117 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCS
T ss_pred             cCCcccccCchhhhhccccccccccccccc
Confidence            678887555678899999999999999874

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.56  E-value=3.9e-16  Score=117.65  Aligned_cols=162  Identities=17%  Similarity=0.029  Sum_probs=109.5

Q ss_pred             ccccceeeccCccccCCCCcCc-----ccCCcceEeecCCCCccccchhhhc-CCCCCcEEEccCccccCCcchhhh---
Q 038633           14 LSRIFALSLLRCCSVGSALAQP-----FRDSFDTYEDDAGHELGGPISPSLL-QLKDLKYLDLSMNNFKGFKVPEFI---   84 (176)
Q Consensus        14 ~~~l~~l~l~~~~~~~~~~~~~-----~~~~~l~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~p~~~---   84 (176)
                      .+.++.|++++|.+........     ....+|++|++++|.+++.....+. .+++|++|++++|.+... ....+   
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~-~~~~L~~~  149 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPE-ACKDLRDL  149 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHH-HHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHH-HHHHHHHH
Confidence            4578888998888754332221     1236788999999988765444443 467888999999988754 33333   


Q ss_pred             --cCcCCccEEEeecccCCC----CcchhccCCCCCCEEEccCCccCccc--ccccccCCCCCccEEeccCCCCCCchhh
Q 038633           85 --GSLKELRYLNLSGSFFSG----TIPQSLGNLTNLLYLDLNNFLDQSNQ--IGLGWLSGLPSLKYLNLGGADLSKDAAY  156 (176)
Q Consensus        85 --~~l~~L~~L~l~~~~~~~----~~p~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~  156 (176)
                        ...++|++|++++|.+..    .++..+...++|++|++++|.+....  .....+..+++|++|+|++|.+.+....
T Consensus       150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~  229 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL  229 (372)
T ss_dssp             HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred             HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence              235779999999998853    23344567888999999998873211  1123456677899999999988755432


Q ss_pred             -hHHHhhccccCcEeeCcCCC
Q 038633          157 -WLESISMLRSLVELRLPNCN  176 (176)
Q Consensus       157 -~~~~l~~~~~L~~L~l~~n~  176 (176)
                       +...+...+.|++|++++|.
T Consensus       230 ~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          230 ALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             HHHHHHHHCSSCCEEECTTSS
T ss_pred             HHHHHHHhCCCCCEEeccCCC
Confidence             22345667889999998874

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.54  E-value=8.9e-14  Score=111.01  Aligned_cols=93  Identities=16%  Similarity=0.087  Sum_probs=41.5

Q ss_pred             cccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEE
Q 038633           15 SRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLN   94 (176)
Q Consensus        15 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~   94 (176)
                      ++++.|++++|.+.... .   .+.+|++|++++|.++. +|.   .+++|++|++++|.++.  +|.   .+++|+.|+
T Consensus        61 ~~L~~L~L~~N~l~~lp-~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~--l~~---~l~~L~~L~  127 (622)
T 3g06_A           61 AHITTLVIPDNNLTSLP-A---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTH--LPA---LPSGLCKLW  127 (622)
T ss_dssp             TTCSEEEECSCCCSCCC-C---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCC--CCC---CCTTCCEEE
T ss_pred             CCCcEEEecCCCCCCCC-C---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCC--CCC---CCCCcCEEE
Confidence            44555555555544321 1   34455555555555542 332   34555555555555442  222   233444444


Q ss_pred             eecccCCCCcchhccCCCCCCEEEccCCcc
Q 038633           95 LSGSFFSGTIPQSLGNLTNLLYLDLNNFLD  124 (176)
Q Consensus        95 l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~  124 (176)
                      +++|++. .+|..   +++|++|++++|.+
T Consensus       128 L~~N~l~-~lp~~---l~~L~~L~Ls~N~l  153 (622)
T 3g06_A          128 IFGNQLT-SLPVL---PPGLQELSVSDNQL  153 (622)
T ss_dssp             CCSSCCS-CCCCC---CTTCCEEECCSSCC
T ss_pred             CCCCCCC-cCCCC---CCCCCEEECcCCcC
Confidence            4444443 22321   24444445544444

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.45  E-value=8.8e-13  Score=97.70  Aligned_cols=103  Identities=17%  Similarity=0.121  Sum_probs=63.8

Q ss_pred             CCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCC-EEEccCCccCcccccccccCCCCCc
Q 038633           62 LKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLL-YLDLNNFLDQSNQIGLGWLSGLPSL  140 (176)
Q Consensus        62 l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~-~L~l~~n~~~~~~~~~~~~~~l~~L  140 (176)
                      +++|+++++++|.+... .+..|..+.+|+.+++.+| +....+..|.++++|+ .+++.. .+  ......+|.+|++|
T Consensus       225 ~~~L~~l~L~~n~i~~I-~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l--~~I~~~aF~~c~~L  299 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTI-PDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SV--TAIEFGAFMGCDNL  299 (329)
T ss_dssp             CTTCCEEECTTBCCCEE-CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TC--CEECTTTTTTCTTE
T ss_pred             cCCCeEEECCCCCccee-cHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cc--eEEchhhhhCCccC
Confidence            56677777777666643 3345666777777777666 4423334566677777 777765 33  23334457777777


Q ss_pred             cEEeccCCCCCCchhhhHHHhhccccCcEeeC
Q 038633          141 KYLNLGGADLSKDAAYWLESISMLRSLVELRL  172 (176)
Q Consensus       141 ~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l  172 (176)
                      +.+++..|.+....+.   ++..+++|+.+..
T Consensus       300 ~~l~l~~n~i~~I~~~---aF~~~~~L~~ly~  328 (329)
T 3sb4_A          300 RYVLATGDKITTLGDE---LFGNGVPSKLIYK  328 (329)
T ss_dssp             EEEEECSSCCCEECTT---TTCTTCCCCEEEC
T ss_pred             CEEEeCCCccCccchh---hhcCCcchhhhcc
Confidence            7777777777655554   5666677776653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.44  E-value=9.6e-15  Score=110.09  Aligned_cols=157  Identities=15%  Similarity=0.016  Sum_probs=111.5

Q ss_pred             cccceeeccCccccCCCC-cCcccCCcceEeecCCCCccccchhhhc-----CCCCCcEEEccCccccCC---cchhhhc
Q 038633           15 SRIFALSLLRCCSVGSAL-AQPFRDSFDTYEDDAGHELGGPISPSLL-----QLKDLKYLDLSMNNFKGF---KVPEFIG   85 (176)
Q Consensus        15 ~~l~~l~l~~~~~~~~~~-~~~~~~~~l~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~l~~~~~~~~---~~p~~~~   85 (176)
                      ++++.|++++|.+..... .....+.++++|++++|.+++.....+.     ..+.|++|++++|.+...   .++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            689999999998854322 2233456899999999999876555553     468899999999998753   1344557


Q ss_pred             CcCCccEEEeecccCCCC----cchhccCCCCCCEEEccCCccCccc--ccccccCCCCCccEEeccCCCCCCchhhhHH
Q 038633           86 SLKELRYLNLSGSFFSGT----IPQSLGNLTNLLYLDLNNFLDQSNQ--IGLGWLSGLPSLKYLNLGGADLSKDAAYWLE  159 (176)
Q Consensus        86 ~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  159 (176)
                      ..++|++|++++|.+.+.    ++..+...++|+.|++++|.+....  ....++...++|++|+|++|.+.+.....+.
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~  260 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR  260 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence            789999999999998642    2455677889999999999984322  2223355678999999999999866555333


Q ss_pred             Hhhcccc--CcEee
Q 038633          160 SISMLRS--LVELR  171 (176)
Q Consensus       160 ~l~~~~~--L~~L~  171 (176)
                      .+.....  |+.+.
T Consensus       261 ~~~~~~~~~L~~l~  274 (372)
T 3un9_A          261 DLGGAAEGGARVVV  274 (372)
T ss_dssp             HCC------CEEEC
T ss_pred             HHhcCCCccchhhH
Confidence            3222222  55555

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.44  E-value=5e-13  Score=99.01  Aligned_cols=82  Identities=16%  Similarity=0.054  Sum_probs=65.4

Q ss_pred             cCCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCcc-EEeccCCCCCCchhhhHHHhhccc
Q 038633           87 LKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLK-YLNLGGADLSKDAAYWLESISMLR  165 (176)
Q Consensus        87 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~~~  165 (176)
                      +++|+.+++++|++....+..|.++++|+.+++..| +  ......+|.++.+|+ .+++.. .+....+.   ++..++
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i--~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~---aF~~c~  297 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-L--KTIGQRVFSNCGRLAGTLELPA-SVTAIEFG---AFMGCD  297 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-C--CEECTTTTTTCTTCCEEEEECT-TCCEECTT---TTTTCT
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-c--ceehHHHhhCChhccEEEEEcc-cceEEchh---hhhCCc
Confidence            678999999999887333456889999999999887 5  345556799999999 999988 66655554   788899


Q ss_pred             cCcEeeCcCC
Q 038633          166 SLVELRLPNC  175 (176)
Q Consensus       166 ~L~~L~l~~n  175 (176)
                      +|+.+++.+|
T Consensus       298 ~L~~l~l~~n  307 (329)
T 3sb4_A          298 NLRYVLATGD  307 (329)
T ss_dssp             TEEEEEECSS
T ss_pred             cCCEEEeCCC
Confidence            9999998765

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.41  E-value=4.4e-13  Score=106.22  Aligned_cols=83  Identities=7%  Similarity=-0.054  Sum_probs=48.1

Q ss_pred             cccccceeeccCccccCC----CCcCcccCCcceEeecCCCCcc----ccchhhhcCCCCCcEEEccCccccCCcchhhh
Q 038633           13 LLSRIFALSLLRCCSVGS----ALAQPFRDSFDTYEDDAGHELG----GPISPSLLQLKDLKYLDLSMNNFKGFKVPEFI   84 (176)
Q Consensus        13 ~~~~l~~l~l~~~~~~~~----~~~~~~~~~~l~~L~l~~n~l~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~   84 (176)
                      .+++|+.|++++|.+.+.    .+.....++.|++|++++|.++    +.++..+.++++|++|++++|.+.  .+|..+
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~--~l~~~~  239 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL--ELVGFF  239 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG--GGHHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH--HHHHHH
Confidence            456666666666665433    1122344556666666666664    234444556667777777776665  355555


Q ss_pred             cCcCCccEEEeec
Q 038633           85 GSLKELRYLNLSG   97 (176)
Q Consensus        85 ~~l~~L~~L~l~~   97 (176)
                      ..+++|++|+++.
T Consensus       240 ~~~~~L~~L~l~~  252 (592)
T 3ogk_B          240 KAAANLEEFCGGS  252 (592)
T ss_dssp             HHCTTCCEEEECB
T ss_pred             hhhhHHHhhcccc
Confidence            5666666666653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.40  E-value=1.2e-12  Score=97.49  Aligned_cols=103  Identities=17%  Similarity=-0.000  Sum_probs=72.9

Q ss_pred             eeeccCc-cccCCCCcCcccCCcceEeecCC-CCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEee
Q 038633           19 ALSLLRC-CSVGSALAQPFRDSFDTYEDDAG-HELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLS   96 (176)
Q Consensus        19 ~l~l~~~-~~~~~~~~~~~~~~~l~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~   96 (176)
                      .++.+++ .+.. +|. ...+.+|++|+|++ |.+++..+..|.++++|++|+|++|.+.+. .|..|..+++|++|+++
T Consensus        12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV-APDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE-CTTGGGSCSCCCEEECC
T ss_pred             EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcccee-CHHHhcCCcCCCEEeCC
Confidence            4566665 4444 444 66677788888885 888777667788888888888888888865 66677788888888888


Q ss_pred             cccCCCCcchhccCCCCCCEEEccCCccC
Q 038633           97 GSFFSGTIPQSLGNLTNLLYLDLNNFLDQ  125 (176)
Q Consensus        97 ~~~~~~~~p~~~~~l~~L~~L~l~~n~~~  125 (176)
                      +|++....+..+..++ |+.|++.+|++.
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            8888733333444444 888888888774

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.40  E-value=2.1e-12  Score=96.13  Aligned_cols=103  Identities=21%  Similarity=0.158  Sum_probs=74.5

Q ss_pred             eecCCC-CccccchhhhcCCCCCcEEEccC-ccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEccC
Q 038633           44 EDDAGH-ELGGPISPSLLQLKDLKYLDLSM-NNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNN  121 (176)
Q Consensus        44 L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~  121 (176)
                      ++.+++ .++ .+|. +..+++|++|+|++ |.+... .+..+..+++|++|++++|++.+..|..|..+++|+.|++++
T Consensus        13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            566776 675 4677 77888888888885 888754 556777888888888888888755566777888888888888


Q ss_pred             CccCcccccccccCCCCCccEEeccCCCCCC
Q 038633          122 FLDQSNQIGLGWLSGLPSLKYLNLGGADLSK  152 (176)
Q Consensus       122 n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  152 (176)
                      |.++..+  ...+..++ |+.|+|.+|.+.-
T Consensus        90 N~l~~~~--~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           90 NALESLS--WKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SCCSCCC--STTTCSCC-CCEEECCSSCCCC
T ss_pred             CccceeC--HHHcccCC-ceEEEeeCCCccC
Confidence            8874322  23344444 8888888888763

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.31  E-value=1.4e-12  Score=103.30  Aligned_cols=134  Identities=10%  Similarity=-0.033  Sum_probs=70.4

Q ss_pred             cCCcceEeecCCCCcccc----chhhhcCCCCCcEEEccCccccCC---cchhhhcCcCCccEEEeecccCCCCcchhcc
Q 038633           37 RDSFDTYEDDAGHELGGP----ISPSLLQLKDLKYLDLSMNNFKGF---KVPEFIGSLKELRYLNLSGSFFSGTIPQSLG  109 (176)
Q Consensus        37 ~~~~l~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~~~~~~~---~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~  109 (176)
                      .+++|++|++++|.+++.    ++..+..+++|++|++++|.+.+.   .++..+..+++|++|++++|.+. .+|..+.
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~~  240 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFK  240 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHHh
Confidence            445666666666655443    333444566666666666665421   13334445666777777766665 3455555


Q ss_pred             CCCCCCEEEccCCccCc------------------------ccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccc
Q 038633          110 NLTNLLYLDLNNFLDQS------------------------NQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLR  165 (176)
Q Consensus       110 ~l~~L~~L~l~~n~~~~------------------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~  165 (176)
                      .+++|+.++++.+....                        ....+..+..+++|++|++++|.+.+...  ...++.++
T Consensus       241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~--~~~~~~~~  318 (592)
T 3ogk_B          241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDH--CTLIQKCP  318 (592)
T ss_dssp             HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHH--HHHHTTCT
T ss_pred             hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHH--HHHHHhCc
Confidence            55666666664321100                        00111223445567777777766543322  12356667


Q ss_pred             cCcEeeCc
Q 038633          166 SLVELRLP  173 (176)
Q Consensus       166 ~L~~L~l~  173 (176)
                      +|+.|+++
T Consensus       319 ~L~~L~L~  326 (592)
T 3ogk_B          319 NLEVLETR  326 (592)
T ss_dssp             TCCEEEEE
T ss_pred             CCCEEecc
Confidence            77777665

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.25  E-value=3e-12  Score=101.37  Aligned_cols=162  Identities=16%  Similarity=0.094  Sum_probs=109.0

Q ss_pred             cccccccceeeccCccccCCCC---------------cCcccCCcceEeecCCCCccccchhhhc-CCCCCcEEEccCc-
Q 038633           11 LHLLSRIFALSLLRCCSVGSAL---------------AQPFRDSFDTYEDDAGHELGGPISPSLL-QLKDLKYLDLSMN-   73 (176)
Q Consensus        11 ~~~~~~l~~l~l~~~~~~~~~~---------------~~~~~~~~l~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~~-   73 (176)
                      +..+++++.|++.+|.......               .......+|++|+++++.+++..+..+. .+++|++|++++| 
T Consensus        62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~  141 (594)
T 2p1m_B           62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE  141 (594)
T ss_dssp             HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred             HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence            3456788999998875432111               0123567899999999998877777776 6899999999998 


Q ss_pred             cccCCcchhhhcCcCCccEEEeecccCCCCcchhc----cCCCCCCEEEccCCccCcc-cccccccCCCCCccEEeccCC
Q 038633           74 NFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSL----GNLTNLLYLDLNNFLDQSN-QIGLGWLSGLPSLKYLNLGGA  148 (176)
Q Consensus        74 ~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~----~~l~~L~~L~l~~n~~~~~-~~~~~~~~~l~~L~~L~l~~n  148 (176)
                      .+....++..+..+++|++|++++|.+.+..+..+    ..+++|+.|++.+|..... .........+++|++|++++|
T Consensus       142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            55532144445578999999999998765444333    3667999999998861101 111122345789999999988


Q ss_pred             CCCCchhhhHHHhhccccCcEeeCcCC
Q 038633          149 DLSKDAAYWLESISMLRSLVELRLPNC  175 (176)
Q Consensus       149 ~l~~~~~~~~~~l~~~~~L~~L~l~~n  175 (176)
                      ...+..+   ..+..+++|++|+++.+
T Consensus       222 ~~~~~l~---~~~~~~~~L~~L~l~~~  245 (594)
T 2p1m_B          222 VPLEKLA---TLLQRAPQLEELGTGGY  245 (594)
T ss_dssp             SCHHHHH---HHHHHCTTCSEEECSBC
T ss_pred             CcHHHHH---HHHhcCCcceEcccccc
Confidence            4322233   36677788888876543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.22  E-value=1.1e-12  Score=103.98  Aligned_cols=134  Identities=16%  Similarity=0.214  Sum_probs=72.7

Q ss_pred             CCcceEeecCCCCccccchhhhc-CCCCCcEEEcc--C----ccccCC----cchhhhcCcCCccEEEeecccCCCCcch
Q 038633           38 DSFDTYEDDAGHELGGPISPSLL-QLKDLKYLDLS--M----NNFKGF----KVPEFIGSLKELRYLNLSGSFFSGTIPQ  106 (176)
Q Consensus        38 ~~~l~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~--~----~~~~~~----~~p~~~~~l~~L~~L~l~~~~~~~~~p~  106 (176)
                      +.+|++|++..+.+++.....+. .+++|+.|+++  +    +.++..    .++..+..+++|+.|++++ .+.+..+.
T Consensus       371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~  449 (594)
T 2p1m_B          371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE  449 (594)
T ss_dssp             CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred             chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence            44555555555555544444443 35666666666  2    333311    0122244556666666655 44333333


Q ss_pred             hccC-CCCCCEEEccCCccCccccccccc-CCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633          107 SLGN-LTNLLYLDLNNFLDQSNQIGLGWL-SGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN  176 (176)
Q Consensus       107 ~~~~-l~~L~~L~l~~n~~~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~  176 (176)
                      .+.. +++|+.|++++|.++.  .....+ ..+++|++|++++|.+.+....  ..+..+++|+.|++++|+
T Consensus       450 ~l~~~~~~L~~L~L~~~~i~~--~~~~~l~~~~~~L~~L~L~~n~~~~~~~~--~~~~~l~~L~~L~l~~~~  517 (594)
T 2p1m_B          450 YIGTYAKKMEMLSVAFAGDSD--LGMHHVLSGCDSLRKLEIRDCPFGDKALL--ANASKLETMRSLWMSSCS  517 (594)
T ss_dssp             HHHHHCTTCCEEEEESCCSSH--HHHHHHHHHCTTCCEEEEESCSCCHHHHH--HTGGGGGGSSEEEEESSC
T ss_pred             HHHHhchhccEeeccCCCCcH--HHHHHHHhcCCCcCEEECcCCCCcHHHHH--HHHHhCCCCCEEeeeCCC
Confidence            3333 6777777777777622  111112 4577888888888887433322  234557888888888774

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.10  E-value=9e-10  Score=83.74  Aligned_cols=156  Identities=13%  Similarity=0.057  Sum_probs=80.3

Q ss_pred             cccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCcc--------------
Q 038633            9 SDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNN--------------   74 (176)
Q Consensus         9 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~--------------   74 (176)
                      ..+..|++|+.+++.++.+.......+. ...|+.+.+..+ ++.....+|.++++|+.+++..+-              
T Consensus       174 ~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~  251 (401)
T 4fdw_A          174 DIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGIT  251 (401)
T ss_dssp             STTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCS
T ss_pred             HHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCccccccccCCcc
Confidence            4556677777777776655544333333 456666666533 545555666677777777766531              


Q ss_pred             -------ccCCcchhhhcCcCCccEEEeecccCC-----CCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccE
Q 038633           75 -------FKGFKVPEFIGSLKELRYLNLSGSFFS-----GTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKY  142 (176)
Q Consensus        75 -------~~~~~~p~~~~~l~~L~~L~l~~~~~~-----~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~  142 (176)
                             +... .+..|..+.+|+.+.+.++.+.     ...+..|.++++|+.+++.. .+  ......+|.+|.+|+.
T Consensus       252 ~i~lp~~i~~I-~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i--~~I~~~aF~~c~~L~~  327 (401)
T 4fdw_A          252 TVKLPNGVTNI-ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SI--RILGQGLLGGNRKVTQ  327 (401)
T ss_dssp             EEEEETTCCEE-CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TC--CEECTTTTTTCCSCCE
T ss_pred             EEEeCCCccEE-ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ce--EEEhhhhhcCCCCccE
Confidence                   1111 1233444555555555554432     12223445555555555552 23  2223344566666666


Q ss_pred             EeccCCCCCCchhhhHHHhhccccCcEeeCcCC
Q 038633          143 LNLGGADLSKDAAYWLESISMLRSLVELRLPNC  175 (176)
Q Consensus       143 L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n  175 (176)
                      +++..+ +......   ++..+ +|+.+++.+|
T Consensus       328 l~lp~~-l~~I~~~---aF~~~-~L~~l~l~~n  355 (401)
T 4fdw_A          328 LTIPAN-VTQINFS---AFNNT-GIKEVKVEGT  355 (401)
T ss_dssp             EEECTT-CCEECTT---SSSSS-CCCEEEECCS
T ss_pred             EEECcc-ccEEcHH---hCCCC-CCCEEEEcCC
Confidence            666443 3323332   45555 6666666554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.09  E-value=8.1e-11  Score=80.27  Aligned_cols=113  Identities=16%  Similarity=0.091  Sum_probs=48.5

Q ss_pred             CCcceEeecCCC-Ccccc----chhhhcCCCCCcEEEccCccccCCc---chhhhcCcCCccEEEeecccCCCC----cc
Q 038633           38 DSFDTYEDDAGH-ELGGP----ISPSLLQLKDLKYLDLSMNNFKGFK---VPEFIGSLKELRYLNLSGSFFSGT----IP  105 (176)
Q Consensus        38 ~~~l~~L~l~~n-~l~~~----~~~~l~~l~~L~~L~l~~~~~~~~~---~p~~~~~l~~L~~L~l~~~~~~~~----~p  105 (176)
                      ...+++|++++| .+.+.    +...+...+.|++|++++|.+....   +...+...++|++|++++|.+...    +.
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~  114 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV  114 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence            444555555555 55432    2233334455555555555554320   112233334555555555555421    12


Q ss_pred             hhccCCCCCCEEEc--cCCccCccc--ccccccCCCCCccEEeccCCCC
Q 038633          106 QSLGNLTNLLYLDL--NNFLDQSNQ--IGLGWLSGLPSLKYLNLGGADL  150 (176)
Q Consensus       106 ~~~~~l~~L~~L~l--~~n~~~~~~--~~~~~~~~l~~L~~L~l~~n~l  150 (176)
                      ..+...++|+.|++  .+|.+....  .....+...++|++|++++|.+
T Consensus       115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            33334445555555  444442111  1112233344555555555544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.96  E-value=4.8e-10  Score=84.07  Aligned_cols=135  Identities=18%  Similarity=0.139  Sum_probs=70.7

Q ss_pred             ccCCcceEeecCCCC-ccccchhhhcCCCCCcEEEccCccccCCcchhhhc--CcCCccEEEeecc--cC-CC----Ccc
Q 038633           36 FRDSFDTYEDDAGHE-LGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIG--SLKELRYLNLSGS--FF-SG----TIP  105 (176)
Q Consensus        36 ~~~~~l~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~--~l~~L~~L~l~~~--~~-~~----~~p  105 (176)
                      ..+++|+.|.++++. +  .++. + .+++|+.|++..|.+... ....+.  .+++|++|+++.+  .. ..    .+.
T Consensus       169 ~~~P~L~~L~L~g~~~l--~l~~-~-~~~~L~~L~L~~~~l~~~-~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~  243 (362)
T 2ra8_A          169 DAMPLLNNLKIKGTNNL--SIGK-K-PRPNLKSLEIISGGLPDS-VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR  243 (362)
T ss_dssp             HTCTTCCEEEEECCBTC--BCCS-C-BCTTCSEEEEECSBCCHH-HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred             hcCCCCcEEEEeCCCCc--eecc-c-cCCCCcEEEEecCCCChH-HHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence            344567777776662 2  1222 2 267777777777766543 333333  5677777776521  11 10    011


Q ss_pred             hhc--cCCCCCCEEEccCCccCccc-ccccccCCCCCccEEeccCCCCCCchhhhH-HHhhccccCcEeeCcCC
Q 038633          106 QSL--GNLTNLLYLDLNNFLDQSNQ-IGLGWLSGLPSLKYLNLGGADLSKDAAYWL-ESISMLRSLVELRLPNC  175 (176)
Q Consensus       106 ~~~--~~l~~L~~L~l~~n~~~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~~~~L~~L~l~~n  175 (176)
                      ..+  ..+++|+.|++.+|.+.... ........+++|++|+|+.|.+.+.....+ ..+..+++|+.|+++.|
T Consensus       244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n  317 (362)
T 2ra8_A          244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN  317 (362)
T ss_dssp             GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred             HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence            112  23577777777776662111 000011246677777777777665433211 13355677777777765

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.96  E-value=2.6e-10  Score=77.74  Aligned_cols=126  Identities=12%  Similarity=0.070  Sum_probs=93.1

Q ss_pred             ccccchhhhcCCCCCcEEEccCc-cccCC---cchhhhcCcCCccEEEeecccCCCC----cchhccCCCCCCEEEccCC
Q 038633           51 LGGPISPSLLQLKDLKYLDLSMN-NFKGF---KVPEFIGSLKELRYLNLSGSFFSGT----IPQSLGNLTNLLYLDLNNF  122 (176)
Q Consensus        51 l~~~~~~~l~~l~~L~~L~l~~~-~~~~~---~~p~~~~~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~n  122 (176)
                      +...+...+...+.|++|++++| .+...   .+...+...++|++|++++|.+...    +...+...++|++|++++|
T Consensus        24 ~~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N  103 (185)
T 1io0_A           24 VEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN  103 (185)
T ss_dssp             HHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred             HHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence            34456777888999999999999 87743   1334556678999999999999742    2344556689999999999


Q ss_pred             ccCccc--ccccccCCCCCccEEec--cCCCCCCchhh-hHHHhhccccCcEeeCcCCC
Q 038633          123 LDQSNQ--IGLGWLSGLPSLKYLNL--GGADLSKDAAY-WLESISMLRSLVELRLPNCN  176 (176)
Q Consensus       123 ~~~~~~--~~~~~~~~l~~L~~L~l--~~n~l~~~~~~-~~~~l~~~~~L~~L~l~~n~  176 (176)
                      .+....  ....++...++|++|+|  ++|.+.+.... ....+...+.|++|++++|.
T Consensus       104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          104 FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            984321  22345677889999999  88999765433 22356677899999999884

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.93  E-value=5.6e-09  Score=79.36  Aligned_cols=154  Identities=11%  Similarity=0.021  Sum_probs=106.8

Q ss_pred             cccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCcccc-----CCcchhh
Q 038633            9 SDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFK-----GFKVPEF   83 (176)
Q Consensus         9 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~-----~~~~p~~   83 (176)
                      ..+..|++|+.+.+.++ +.......+.. ..|+.+.+ .+.++.....+|.++++|+.+.+.++.+.     .. .+..
T Consensus       220 ~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I-~~~a  295 (401)
T 4fdw_A          220 QAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMI-HPYC  295 (401)
T ss_dssp             TTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEE-CTTT
T ss_pred             hHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEE-CHHH
Confidence            34555667777777652 33222233333 66777777 34566666788999999999999988765     23 4567


Q ss_pred             hcCcCCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhc
Q 038633           84 IGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISM  163 (176)
Q Consensus        84 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  163 (176)
                      |..+++|+.+.+.+ .+.......|.++++|+.+.+..+ +  ......+|.++ +|+.+++.+|.+......   .+..
T Consensus       296 F~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l--~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~---~F~~  367 (401)
T 4fdw_A          296 LEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-V--TQINFSAFNNT-GIKEVKVEGTTPPQVFEK---VWYG  367 (401)
T ss_dssp             TTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-C--CEECTTSSSSS-CCCEEEECCSSCCBCCCS---SCCC
T ss_pred             hhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-c--cEEcHHhCCCC-CCCEEEEcCCCCcccccc---cccC
Confidence            88899999999985 465344467888999999999665 4  33445668999 999999999987765544   4555


Q ss_pred             cc-cCcEeeCcC
Q 038633          164 LR-SLVELRLPN  174 (176)
Q Consensus       164 ~~-~L~~L~l~~  174 (176)
                      ++ .++.|.+..
T Consensus       368 ~~~~l~~l~vp~  379 (401)
T 4fdw_A          368 FPDDITVIRVPA  379 (401)
T ss_dssp             SCTTCCEEEECG
T ss_pred             CCCCccEEEeCH
Confidence            53 667776654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.93  E-value=9e-10  Score=82.61  Aligned_cols=157  Identities=11%  Similarity=0.111  Sum_probs=98.8

Q ss_pred             ccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhc--CCCCCcEEEccCc--cccCC----cchhh
Q 038633           12 HLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLL--QLKDLKYLDLSMN--NFKGF----KVPEF   83 (176)
Q Consensus        12 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~--~l~~L~~L~l~~~--~~~~~----~~p~~   83 (176)
                      ..+++|+.|++.+|.-.. .+ . ....+|++|++..+.++......+.  .+++|+.|+++.+  ...+.    .+...
T Consensus       169 ~~~P~L~~L~L~g~~~l~-l~-~-~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~  245 (362)
T 2ra8_A          169 DAMPLLNNLKIKGTNNLS-IG-K-KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL  245 (362)
T ss_dssp             HTCTTCCEEEEECCBTCB-CC-S-CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred             hcCCCCcEEEEeCCCCce-ec-c-ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence            346788899888763211 11 1 3478899999998888766555555  7899999998532  21110    01122


Q ss_pred             h--cCcCCccEEEeecccCCCCcchhcc---CCCCCCEEEccCCccCccc--ccccccCCCCCccEEeccCCCCCCchhh
Q 038633           84 I--GSLKELRYLNLSGSFFSGTIPQSLG---NLTNLLYLDLNNFLDQSNQ--IGLGWLSGLPSLKYLNLGGADLSKDAAY  156 (176)
Q Consensus        84 ~--~~l~~L~~L~l~~~~~~~~~p~~~~---~l~~L~~L~l~~n~~~~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~  156 (176)
                      +  ..+++|++|++.+|.+.+..+..+.   .+++|+.|+++.|.+....  .....+.++++|+.|+++.|.+.+....
T Consensus       246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~  325 (362)
T 2ra8_A          246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKK  325 (362)
T ss_dssp             SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHH
T ss_pred             HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHH
Confidence            2  2478999999999888643333332   5788999999998874321  1111234678899999999988754433


Q ss_pred             hHHHhhccccCcEeeCcCC
Q 038633          157 WLESISMLRSLVELRLPNC  175 (176)
Q Consensus       157 ~~~~l~~~~~L~~L~l~~n  175 (176)
                         .+...- ..+++++++
T Consensus       326 ---~l~~al-g~~~~~~~~  340 (362)
T 2ra8_A          326 ---ELQKSL-PMKIDVSDS  340 (362)
T ss_dssp             ---HHHHHC-CSEEECCSB
T ss_pred             ---HHHHHc-CCEEEecCC
Confidence               333211 355777664

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.82  E-value=5e-09  Score=70.47  Aligned_cols=34  Identities=9%  Similarity=-0.146  Sum_probs=17.5

Q ss_pred             cceEeecCCCCccccchhhhcCCCCCcEEEccCc
Q 038633           40 FDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMN   73 (176)
Q Consensus        40 ~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~   73 (176)
                      .|++||++++.+++..-..+.++++|+.|++++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C   95 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC   95 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence            4555555555555444444445555555555555

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.78  E-value=6.2e-09  Score=70.03  Aligned_cols=104  Identities=16%  Similarity=0.172  Sum_probs=74.5

Q ss_pred             CCCCcEEEccCccccCCcchhhhcCcCCccEEEeeccc-CCCCcchhccCC----CCCCEEEccCCc-cCcccccccccC
Q 038633           62 LKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSF-FSGTIPQSLGNL----TNLLYLDLNNFL-DQSNQIGLGWLS  135 (176)
Q Consensus        62 l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~-~~~~~p~~~~~l----~~L~~L~l~~n~-~~~~~~~~~~~~  135 (176)
                      -..|+.||+++|.++.. .-..+..+++|++|++++|. +++..-..+..+    ++|++|++++|. ++  ......+.
T Consensus        60 ~~~L~~LDLs~~~Itd~-GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT--D~Gl~~L~  136 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSI-GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT--DKGIIALH  136 (176)
T ss_dssp             CCCEEEEEEESCCCCGG-GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC--HHHHHHGG
T ss_pred             CceEeEEeCcCCCccHH-HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC--HHHHHHHh
Confidence            45799999999998876 66778899999999999995 664444556554    479999999986 53  22333467


Q ss_pred             CCCCccEEeccCCCCCCchhhhHHHh-hccccCc
Q 038633          136 GLPSLKYLNLGGADLSKDAAYWLESI-SMLRSLV  168 (176)
Q Consensus       136 ~l~~L~~L~l~~n~l~~~~~~~~~~l-~~~~~L~  168 (176)
                      ++++|++|+++++.-.+........+ ..+|+++
T Consensus       137 ~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~  170 (176)
T 3e4g_A          137 HFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE  170 (176)
T ss_dssp             GCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred             cCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence            89999999999987444433212223 3556654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.74  E-value=2.6e-09  Score=76.74  Aligned_cols=100  Identities=19%  Similarity=0.136  Sum_probs=67.7

Q ss_pred             eecCCCCc---cccchhhhcCCCCCcEEEccCccccCCc-chhhhcCcCCccEEEeecccCCCC-cchhccCCCCCCEEE
Q 038633           44 EDDAGHEL---GGPISPSLLQLKDLKYLDLSMNNFKGFK-VPEFIGSLKELRYLNLSGSFFSGT-IPQSLGNLTNLLYLD  118 (176)
Q Consensus        44 L~l~~n~l---~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~p~~~~~l~~L~~L~l~~~~~~~~-~p~~~~~l~~L~~L~  118 (176)
                      ++++.|..   ....+.....+++|++|++++|.+.+.. +|..+..+++|+.|++++|++.+. ....+..+ +|+.|+
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~  226 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELW  226 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEE
Confidence            56666743   2222233356899999999999998631 446677899999999999999743 11233344 899999


Q ss_pred             ccCCccCcc-----cccccccCCCCCccEEe
Q 038633          119 LNNFLDQSN-----QIGLGWLSGLPSLKYLN  144 (176)
Q Consensus       119 l~~n~~~~~-----~~~~~~~~~l~~L~~L~  144 (176)
                      +.+|++...     ......+..+++|+.||
T Consensus       227 L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          227 LDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             CTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             ccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            999998421     11123467788999885

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.70  E-value=6.5e-09  Score=74.66  Aligned_cols=86  Identities=24%  Similarity=0.233  Sum_probs=64.6

Q ss_pred             cCcCCccEEEeecccCCC--CcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchh---hh-H
Q 038633           85 GSLKELRYLNLSGSFFSG--TIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAA---YW-L  158 (176)
Q Consensus        85 ~~l~~L~~L~l~~~~~~~--~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~-~  158 (176)
                      ..+++|+.|++++|++.+  .+|..+..+++|+.|++++|.++.... ...+..+ +|++|+|++|.+.+..+   .. .
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~-l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE-LDKIKGL-KLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG-GGGGTTS-CCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchh-hhhcccC-CcceEEccCCcCccccCcchhHHH
Confidence            357899999999999985  344667789999999999999965422 2234455 89999999999986332   11 1


Q ss_pred             HHhhccccCcEeeC
Q 038633          159 ESISMLRSLVELRL  172 (176)
Q Consensus       159 ~~l~~~~~L~~L~l  172 (176)
                      ..+..+|+|+.||=
T Consensus       245 ~il~~~P~L~~LDg  258 (267)
T 3rw6_A          245 AIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHHCTTCCEESS
T ss_pred             HHHHHCcccCeECC
Confidence            35678899998873

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.25  E-value=1.2e-06  Score=59.94  Aligned_cols=121  Identities=13%  Similarity=0.050  Sum_probs=51.2

Q ss_pred             chhhhcCCCCCcEEEccCc-cccCC---cchhhhcCcCCccEEEeecccCCC----CcchhccCCCCCCEEEccCCccCc
Q 038633           55 ISPSLLQLKDLKYLDLSMN-NFKGF---KVPEFIGSLKELRYLNLSGSFFSG----TIPQSLGNLTNLLYLDLNNFLDQS  126 (176)
Q Consensus        55 ~~~~l~~l~~L~~L~l~~~-~~~~~---~~p~~~~~l~~L~~L~l~~~~~~~----~~p~~~~~l~~L~~L~l~~n~~~~  126 (176)
                      +...+..-+.|++|+++++ .+...   .+.+.+..-+.|+.|++++|++.+    .+.+.+..-+.|++|++++|.+..
T Consensus        33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~  112 (197)
T 1pgv_A           33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP  112 (197)
T ss_dssp             HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence            3333444455555555543 33321   022233334455555555555532    222233334555555555555521


Q ss_pred             cc--ccccccCCCCCccEEeccCC---CCCCchh-hhHHHhhccccCcEeeCcCC
Q 038633          127 NQ--IGLGWLSGLPSLKYLNLGGA---DLSKDAA-YWLESISMLRSLVELRLPNC  175 (176)
Q Consensus       127 ~~--~~~~~~~~l~~L~~L~l~~n---~l~~~~~-~~~~~l~~~~~L~~L~l~~n  175 (176)
                      ..  ....++..-+.|++|+|++|   .+..... .....+..-+.|+.|+++.|
T Consensus       113 ~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          113 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  167 (197)
T ss_dssp             HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence            11  11123444445566665543   2221111 11223444455555555543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.17  E-value=2e-05  Score=59.10  Aligned_cols=128  Identities=10%  Similarity=-0.038  Sum_probs=75.5

Q ss_pred             ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEE
Q 038633           14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYL   93 (176)
Q Consensus        14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L   93 (176)
                      +..+..+.+.. .+.......+..+..|+.+.+..+ ++......|.++..|+.+.+..+ +... ....+..+.+|+.+
T Consensus       216 ~~~l~~i~~~~-~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i-~~~aF~~c~~L~~i  291 (379)
T 4h09_A          216 GKNLKKITITS-GVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTV-PYLLCSGCSNLTKV  291 (379)
T ss_dssp             CSSCSEEECCT-TCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEE-CTTTTTTCTTCCEE
T ss_pred             ccccceeeecc-ceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceec-cccccccccccccc
Confidence            34444444433 222222334556666777776554 44455566777777777777554 3322 33456677778888


Q ss_pred             EeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCC
Q 038633           94 NLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGA  148 (176)
Q Consensus        94 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n  148 (176)
                      .+.++.+...-...|.++.+|+.+.+..+ +  ......+|.+|.+|+.+.+..+
T Consensus       292 ~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l--~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          292 VMDNSAIETLEPRVFMDCVKLSSVTLPTA-L--KTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             EECCTTCCEECTTTTTTCTTCCEEECCTT-C--CEECTTTTTTCTTCCCCCCCTT
T ss_pred             cccccccceehhhhhcCCCCCCEEEcCcc-c--cEEHHHHhhCCCCCCEEEECCc
Confidence            77777665333456777777888877543 3  2233455777778877777654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.12  E-value=3.8e-05  Score=57.58  Aligned_cols=130  Identities=12%  Similarity=0.048  Sum_probs=90.4

Q ss_pred             cccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCC
Q 038633           35 PFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNL  114 (176)
Q Consensus        35 ~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L  114 (176)
                      +.....++.+.+..+ ++......+.++..|+.+.+..+ +... ....+..+.+|+.+.+..+ +.......|..+++|
T Consensus       213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I-~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L  288 (379)
T 4h09_A          213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSI-GSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL  288 (379)
T ss_dssp             TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEE-CTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred             cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEe-Cccccceeehhcccccccc-ceecccccccccccc
Confidence            444556666666544 33455667788889999988776 4433 4456777888999988654 432333567889999


Q ss_pred             CEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcC
Q 038633          115 LYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPN  174 (176)
Q Consensus       115 ~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~  174 (176)
                      +.+.+..+.++  .....+|.+|.+|+.+.+..+ +......   ++..+.+|+.+.+..
T Consensus       289 ~~i~l~~~~i~--~I~~~aF~~c~~L~~i~lp~~-l~~I~~~---aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          289 TKVVMDNSAIE--TLEPRVFMDCVKLSSVTLPTA-LKTIQVY---AFKNCKALSTISYPK  342 (379)
T ss_dssp             CEEEECCTTCC--EECTTTTTTCTTCCEEECCTT-CCEECTT---TTTTCTTCCCCCCCT
T ss_pred             ccccccccccc--eehhhhhcCCCCCCEEEcCcc-ccEEHHH---HhhCCCCCCEEEECC
Confidence            99999887773  344456999999999999765 4434343   677888898887754

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.11  E-value=3e-06  Score=57.94  Aligned_cols=115  Identities=13%  Similarity=0.065  Sum_probs=81.7

Q ss_pred             ccCCcceEeecCCC-Ccccc----chhhhcCCCCCcEEEccCccccCC---cchhhhcCcCCccEEEeecccCCCC----
Q 038633           36 FRDSFDTYEDDAGH-ELGGP----ISPSLLQLKDLKYLDLSMNNFKGF---KVPEFIGSLKELRYLNLSGSFFSGT----  103 (176)
Q Consensus        36 ~~~~~l~~L~l~~n-~l~~~----~~~~l~~l~~L~~L~l~~~~~~~~---~~p~~~~~l~~L~~L~l~~~~~~~~----  103 (176)
                      .....|++|+++++ .+.++    +...+..-+.|+.|+|++|.+...   .+.+.+..-..|++|++++|++...    
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            44567899999986 87654    445566778899999999998854   1334454558899999999999742    


Q ss_pred             cchhccCCCCCCEEEccCCcc-Cccc----ccccccCCCCCccEEeccCCCC
Q 038633          104 IPQSLGNLTNLLYLDLNNFLD-QSNQ----IGLGWLSGLPSLKYLNLGGADL  150 (176)
Q Consensus       104 ~p~~~~~l~~L~~L~l~~n~~-~~~~----~~~~~~~~l~~L~~L~l~~n~l  150 (176)
                      +.+.+..-+.|+.|++.+|.. ....    ....++..-+.|+.|+++.|.+
T Consensus       118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            334556678899999986533 2121    2234466778999999987764

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.10  E-value=2.9e-05  Score=58.65  Aligned_cols=132  Identities=9%  Similarity=0.086  Sum_probs=85.3

Q ss_pred             CCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccC
Q 038633           31 ALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGN  110 (176)
Q Consensus        31 ~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~  110 (176)
                      ....+..+..|+.+.+..+.. ......|.+++.|+.+.+.. .+... ....|..+.+|+.+.+..+ +......+|.+
T Consensus       257 ~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~~I-~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~  332 (394)
T 4gt6_A          257 ETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RITEL-PESVFAGCISLKSIDIPEG-ITQILDDAFAG  332 (394)
T ss_dssp             CTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-TCCEE-CTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred             ccceeeecccccEEecccccc-eecCcccccccccccccCCC-ccccc-CceeecCCCCcCEEEeCCc-ccEehHhHhhC
Confidence            344667778888888876544 45567788899999998864 34433 4456778889999988764 43233456888


Q ss_pred             CCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCC
Q 038633          111 LTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNC  175 (176)
Q Consensus       111 l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n  175 (176)
                      +.+|+.+.+..+ +  ......+|.+|.+|+.+++.++...      ...+....+|+.+.+..+
T Consensus       333 C~~L~~i~ip~s-v--~~I~~~aF~~C~~L~~i~~~~~~~~------~~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          333 CEQLERIAIPSS-V--TKIPESAFSNCTALNNIEYSGSRSQ------WNAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             CTTCCEEEECTT-C--CBCCGGGGTTCTTCCEEEESSCHHH------HHTCBCCCCC--------
T ss_pred             CCCCCEEEECcc-c--CEEhHhHhhCCCCCCEEEECCceee------hhhhhccCCCCEEEeCCC
Confidence            899999998654 3  3344456899999999998876421      124455677777776543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.04  E-value=3.2e-05  Score=58.36  Aligned_cols=83  Identities=19%  Similarity=0.103  Sum_probs=34.6

Q ss_pred             hcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCC
Q 038633           59 LLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLP  138 (176)
Q Consensus        59 l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~  138 (176)
                      |..+.+|+.+.+..+ +..+ ...++..+.+|+.+++..+ +......+|.++.+|+.+++..+ +  ......+|.+|.
T Consensus       293 F~~~~~L~~i~l~~~-i~~I-~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l--~~I~~~aF~~C~  366 (394)
T 4fs7_A          293 FYGCSSLTEVKLLDS-VKFI-GEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-L--RKIGANAFQGCI  366 (394)
T ss_dssp             TTTCTTCCEEEECTT-CCEE-CTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-C--CEECTTTBTTCT
T ss_pred             ccccccccccccccc-ccee-chhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-c--cEehHHHhhCCC
Confidence            334444444444433 2211 2233444455555554432 22122234444555555555433 2  122223355555


Q ss_pred             CccEEeccC
Q 038633          139 SLKYLNLGG  147 (176)
Q Consensus       139 ~L~~L~l~~  147 (176)
                      +|+.+++..
T Consensus       367 ~L~~i~lp~  375 (394)
T 4fs7_A          367 NLKKVELPK  375 (394)
T ss_dssp             TCCEEEEEG
T ss_pred             CCCEEEECC
Confidence            555555543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.03  E-value=4.8e-05  Score=57.42  Aligned_cols=125  Identities=18%  Similarity=0.077  Sum_probs=76.8

Q ss_pred             cCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCE
Q 038633           37 RDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLY  116 (176)
Q Consensus        37 ~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~  116 (176)
                      .+..++.+.+..+.. ......|..+..++........+.    ...+..+.+|+.+.+..+ +......+|..+.+|+.
T Consensus       251 ~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~----~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~  324 (394)
T 4fs7_A          251 GCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVP----EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVS  324 (394)
T ss_dssp             TCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEEC----TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred             ccccceeEEcCCCcc-eeeccccccccccceeccCceeec----cccccccccccccccccc-cceechhhhcCCCCCCE
Confidence            333444444433322 233344445555555544433221    234556788888888765 43233456788899999


Q ss_pred             EEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcC
Q 038633          117 LDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPN  174 (176)
Q Consensus       117 L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~  174 (176)
                      +++..+ +  ......+|.+|.+|+.+++..+ +......   ++..+++|+.+++..
T Consensus       325 i~lp~~-v--~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~---aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          325 IDLPYL-V--EEIGKRSFRGCTSLSNINFPLS-LRKIGAN---AFQGCINLKKVELPK  375 (394)
T ss_dssp             ECCCTT-C--CEECTTTTTTCTTCCEECCCTT-CCEECTT---TBTTCTTCCEEEEEG
T ss_pred             EEeCCc-c--cEEhHHhccCCCCCCEEEECcc-ccEehHH---HhhCCCCCCEEEECC
Confidence            999654 4  3344566999999999999876 5544443   778889999988754

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.03  E-value=2.8e-05  Score=58.71  Aligned_cols=115  Identities=10%  Similarity=0.042  Sum_probs=76.5

Q ss_pred             ccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCccccc
Q 038633           51 LGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIG  130 (176)
Q Consensus        51 l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~  130 (176)
                      ++.....+|.++..|+.+.+..+... . ....+..+..|+.+.+.. .+...-...|.++.+|+.+++..+ +  ....
T Consensus       253 v~~i~~~aF~~c~~L~~i~lp~~~~~-I-~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v--~~I~  326 (394)
T 4gt6_A          253 VARIETHAFDSCAYLASVKMPDSVVS-I-GTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-I--TQIL  326 (394)
T ss_dssp             EEEECTTTTTTCSSCCEEECCTTCCE-E-CTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-C--CEEC
T ss_pred             ceEcccceeeecccccEEecccccce-e-cCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-c--cEeh
Confidence            34445567788888888888765443 2 445667778888888764 343222346777888888888654 3  2333


Q ss_pred             ccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCC
Q 038633          131 LGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNC  175 (176)
Q Consensus       131 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n  175 (176)
                      ..+|.+|.+|+.+.+..+ +......   ++..+++|+.+++.++
T Consensus       327 ~~aF~~C~~L~~i~ip~s-v~~I~~~---aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          327 DDAFAGCEQLERIAIPSS-VTKIPES---AFSNCTALNNIEYSGS  367 (394)
T ss_dssp             TTTTTTCTTCCEEEECTT-CCBCCGG---GGTTCTTCCEEEESSC
T ss_pred             HhHhhCCCCCCEEEECcc-cCEEhHh---HhhCCCCCCEEEECCc
Confidence            456888888888888654 4434343   6778888888887764

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.24  E-value=0.00055  Score=43.56  Aligned_cols=55  Identities=22%  Similarity=0.292  Sum_probs=29.6

Q ss_pred             EeecCCCCcc-ccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccC
Q 038633           43 YEDDAGHELG-GPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFF  100 (176)
Q Consensus        43 ~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~  100 (176)
                      .++-+++.++ ..+|..+  .+++++|+|++|.++.. .+..+..+++|+.|++.+|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTAL-PPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSC-CTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCcc-ChhhhhhccccCEEEecCCCe
Confidence            4555556553 2344322  23466666666666643 334455566666666666655

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.84  E-value=0.0022  Score=40.72  Aligned_cols=58  Identities=17%  Similarity=-0.057  Sum_probs=44.4

Q ss_pred             eeeccCcccc-CCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCC
Q 038633           19 ALSLLRCCSV-GSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGF   78 (176)
Q Consensus        19 ~l~l~~~~~~-~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~   78 (176)
                      .++.++..+. ..+|.  ....++++|+|++|.|+..-+..|..+++|++|+|++|.+...
T Consensus        12 ~v~Cs~~~L~~~~vP~--~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd   70 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPT--AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD   70 (130)
T ss_dssp             EEECCSSCCCTTTSCS--CCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred             EEEeCCCCCccccCCC--CCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeecc
Confidence            5666666654 23333  2334689999999999887788899999999999999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	176
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-04
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.6 bits (117), Expect = 3e-08
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 57  PSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLY 116
             +  L  L+ L  + N          + +L  + +L+   +  S   P  L NLT +  
Sbjct: 323 SPVSSLTKLQRLFFANNKVSD---VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQ 377

Query: 117 LDLNN 121
           L LN+
Sbjct: 378 LGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.0 bits (105), Expect = 1e-06
 Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 13/125 (10%)

Query: 51  LGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGN 110
           LG     ++  L  L  L     N    +    I +LK L YL L  +  S   P  + +
Sbjct: 270 LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSS 327

Query: 111 LTNLLYLDLNNFLDQSNQI-GLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVE 169
           LT L  L   N     N++  +  L+ L ++ +L+ G   +S      L  ++ L  + +
Sbjct: 328 LTKLQRLFFAN-----NKVSDVSSLANLTNINWLSAGHNQISD-----LTPLANLTRITQ 377

Query: 170 LRLPN 174
           L L +
Sbjct: 378 LGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 1e-04
 Identities = 26/136 (19%), Positives = 45/136 (33%), Gaps = 24/136 (17%)

Query: 57  PSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLY 116
            +L  L +L  LDL+ N          +  L +L  L L  +  S   P +       L 
Sbjct: 235 GTLASLTNLTDLDLANNQISNL---APLSGLTKLTELKLGANQISNISPLAGLTALTNLE 291

Query: 117 LDLNNF----------------LDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLES 160
           L+ N                  L  +N   +  +S L  L+ L      +S      + S
Sbjct: 292 LNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD-----VSS 346

Query: 161 ISMLRSLVELRLPNCN 176
           ++ L ++  L   +  
Sbjct: 347 LANLTNINWLSAGHNQ 362

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 4e-04
 Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 57  PSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLY 116
            S   L  +  L       K     + +  L  L  +N S +  +   P  L NLT L+ 
Sbjct: 38  VSQTDLDQVTTLQADRLGIKSI---DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVD 92

Query: 117 LDLNNF 122
           + +NN 
Sbjct: 93  ILMNNN 98

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 7e-08
 Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 7/91 (7%)

Query: 64  DLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSG----TIPQSLGNLTNLLYLDL 119
           D++ LD+        +  E +  L++ + + L     +      I  +L     L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 120 --NNFLDQS-NQIGLGWLSGLPSLKYLNLGG 147
             N   D   + +  G  +    ++ L+L  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 4e-04
 Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 10/89 (11%)

Query: 65  LKYLDLSMNNFKGF---KVPEFIGSLKELRYLNLSGSFFSGTIPQSLG-----NLTNLLY 116
           L+ L L+  +        +   + +   LR L+LS +         L          L  
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430

Query: 117 LDL--NNFLDQSNQIGLGWLSGLPSLKYL 143
           L L    + ++            PSL+ +
Sbjct: 431 LVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (84), Expect = 5e-04
 Identities = 15/87 (17%), Positives = 23/87 (26%), Gaps = 9/87 (10%)

Query: 45  DDAGHELGGPISPSLL-QLKDLKYLDLSMNNF--KGFK-VPEFIGSLKELRYLNLSGSFF 100
           D    EL       LL  L+  + + L          K +   +     L  LNL  +  
Sbjct: 8   DIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL 67

Query: 101 SGTIPQSLG-----NLTNLLYLDLNNF 122
                  +          +  L L N 
Sbjct: 68  GDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 7e-04
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 55  ISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKE----LRYLNLSGSFFSGTIPQSLGN 110
           ++ +LL    L+ LDLS N      + + + S+++    L  L L   ++S  +   L  
Sbjct: 389 LAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQA 448

Query: 111 L 111
           L
Sbjct: 449 L 449

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 48.2 bits (113), Expect = 1e-07
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 67  YLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDL--NNFL 123
            LDL  N   G  +P+ +  LK L  LN+S +   G IP   GNL          N  L
Sbjct: 248 GLDLRNNRIYG-TLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCL 304

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 40.9 bits (94), Expect = 3e-05
 Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 2/72 (2%)

Query: 34  QPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYL 93
           +          D   + + G +   L QLK L  L++S NN  G ++P+  G+L+     
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG-EIPQG-GNLQRFDVS 296

Query: 94  NLSGSFFSGTIP 105
             + +      P
Sbjct: 297 AYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.0 bits (84), Expect = 7e-04
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 7/59 (11%)

Query: 91  RYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQI--GLGWLSGLPSLKYLNLGG 147
             L+L  +   GT+PQ L  L  L  L+++      N +   +     L          
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF-----NNLCGEIPQGGNLQRFDVSAYAN 300

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.9 bits (108), Expect = 2e-07
 Identities = 27/114 (23%), Positives = 40/114 (35%), Gaps = 5/114 (4%)

Query: 57  PSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLY 116
             L QL  + +LDLS N  +    P  + +L+ L  L  S +        +       L 
Sbjct: 14  CHLEQLLLVTHLDLSHNRLRAL--PPALAALRCLEVLQASDNALENVDGVANLPRLQELL 71

Query: 117 LDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVEL 170
           L  N          +  L   P L  LNL G  L ++         ML S+  +
Sbjct: 72  LCNNRL---QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 2e-06
 Identities = 20/92 (21%), Positives = 36/92 (39%)

Query: 53  GPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLT 112
                       ++++DLS +  +   +   +    +L+ L+L G   S  I  +L   +
Sbjct: 36  DQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS 95

Query: 113 NLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLN 144
           NL+ L+L+     S       LS    L  LN
Sbjct: 96  NLVRLNLSGCSGFSEFALQTLLSSCSRLDELN 127

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.9 bits (97), Expect = 1e-05
 Identities = 17/59 (28%), Positives = 21/59 (35%), Gaps = 1/59 (1%)

Query: 63  KDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNN 121
            D   LDL  N     K      +LK L  L L  +  S   P +   L  L  L L+ 
Sbjct: 31  PDTALLDLQNNKITEIK-DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 7e-05
 Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 5/57 (8%)

Query: 65  LKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNN 121
           L  L    N          + SL  L  ++L  +  S   P  L N +NL  + L N
Sbjct: 175 LTTLKADDNKISDI---SPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 8e-05
 Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 4/62 (6%)

Query: 61  QLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLN 120
           ++     ++    N     +P  +   K+   L+LS +        +L   T L  L+L+
Sbjct: 8   KVASHLEVNCDKRNLT--ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 121 NF 122
             
Sbjct: 64  RA 65

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 1e-04
 Identities = 13/70 (18%), Positives = 19/70 (27%), Gaps = 12/70 (17%)

Query: 72  MNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGL 131
            NN       +          L++S +         L NL  L      N          
Sbjct: 185 DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN---------- 234

Query: 132 GWLSGLPSLK 141
             L  LP+L+
Sbjct: 235 --LKKLPTLE 242

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 2e-04
 Identities = 22/122 (18%), Positives = 39/122 (31%), Gaps = 4/122 (3%)

Query: 55  ISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNL 114
           +   + +  D     L +   +       + +      LN   S  + T+     N+  L
Sbjct: 12  LKLIMSKRYDGSQQALDLKGLR---SDPDLVAQNIDVVLNRR-SSMAATLRIIEENIPEL 67

Query: 115 LYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPN 174
           L L+L+N            +   P+LK LNL G +L  +          L  L       
Sbjct: 68  LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 127

Query: 175 CN 176
            +
Sbjct: 128 SD 129

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 36.7 bits (83), Expect = 7e-04
 Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 7/62 (11%)

Query: 61  QLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLN 120
               L+ L++S N        E       L  L  S +  +  +P+   NL   L+++ N
Sbjct: 282 LPPSLEELNVSNNKLI-----ELPALPPRLERLIASFNHLA-EVPELPQNLKQ-LHVEYN 334

Query: 121 NF 122
             
Sbjct: 335 PL 336

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 35.4 bits (80), Expect = 0.002
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 64  DLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYL 117
           + + ++L        K+   + +LK  ++L LS +     I  SL  + NL  L
Sbjct: 24  EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRIL 75

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (77), Expect = 0.003
 Identities = 21/138 (15%), Positives = 36/138 (26%), Gaps = 27/138 (19%)

Query: 56  SPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLL 115
           +         + LDL         +     +L +   ++ S +            L  L 
Sbjct: 11  AAQYTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLK 66

Query: 116 YLDLNNFLDQ-----------------------SNQIGLGWLSGLPSLKYLNLGGADLSK 152
            L +NN                                L  L+ L SL YL +    ++ 
Sbjct: 67  TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN 126

Query: 153 DAAYWLESISMLRSLVEL 170
              Y L  I  +  +  L
Sbjct: 127 KKHYRLYVIYKVPQVRVL 144

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	176
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.86
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.84
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.82
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.79
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.79
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.79
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.77
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.76
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.75
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.74
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.74
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.73
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.73
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.72
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.69
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.67
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.67
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.65
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.62
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.6
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.59
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.5
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.49
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.48
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.47
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.45
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.4
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.32
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.27
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.25
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.15
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.09
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.95
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.95
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.86
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.68
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.57
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.48
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.4
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.3
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.89

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.86  E-value=6e-22  Score=144.26  Aligned_cols=170  Identities=22%  Similarity=0.292  Sum_probs=111.6

Q ss_pred             ceeecccccccccccceeeccCccccCC--CCcCcccCCcceEeecCC-CCccccchhhhcCCCCCcEEEccCccccCCc
Q 038633            3 YFVFALSDLHLLSRIFALSLLRCCSVGS--ALAQPFRDSFDTYEDDAG-HELGGPISPSLLQLKDLKYLDLSMNNFKGFK   79 (176)
Q Consensus         3 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~--~~~~~~~~~~l~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~   79 (176)
                      |.++.|..-..-.+++.|++.++.+.+.  .|.....+++|++|++++ |.+++.+|..+.++++|++|++++|.+.+. 
T Consensus        38 w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~-  116 (313)
T d1ogqa_          38 WLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-  116 (313)
T ss_dssp             STTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-
T ss_pred             CCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccccccc-
Confidence            7788877655556788888888877763  456677788888888876 678778888888888888888888877754 


Q ss_pred             chhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEccCCccC-------------------------c--------
Q 038633           80 VPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQ-------------------------S--------  126 (176)
Q Consensus        80 ~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~-------------------------~--------  126 (176)
                      .+..+..+..|+++++++|++....|..++.++.++.+++++|.+.                         .        
T Consensus       117 ~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~  196 (313)
T d1ogqa_         117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN  196 (313)
T ss_dssp             CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG
T ss_pred             ccccccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccc
Confidence            4444444444444444444443333434444444444443333220                         0        


Q ss_pred             ------------------------------------ccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEe
Q 038633          127 ------------------------------------NQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVEL  170 (176)
Q Consensus       127 ------------------------------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L  170 (176)
                                                          .......+..+++|+.|++++|++.+..|.   .++.+++|++|
T Consensus       197 l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~---~l~~L~~L~~L  273 (313)
T d1ogqa_         197 LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ---GLTQLKFLHSL  273 (313)
T ss_dssp             CCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCG---GGGGCTTCCEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccCccCeecccCCh---HHhCCCCCCEE
Confidence                                                000112345677888999999999877776   78889999999


Q ss_pred             eCcCCC
Q 038633          171 RLPNCN  176 (176)
Q Consensus       171 ~l~~n~  176 (176)
                      ++++|+
T Consensus       274 ~Ls~N~  279 (313)
T d1ogqa_         274 NVSFNN  279 (313)
T ss_dssp             ECCSSE
T ss_pred             ECcCCc
Confidence            999884

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.2e-20  Score=133.11  Aligned_cols=151  Identities=23%  Similarity=0.070  Sum_probs=91.2

Q ss_pred             cccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEE
Q 038633           15 SRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLN   94 (176)
Q Consensus        15 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~   94 (176)
                      ++++.|++++|.+.+..+..+..+++|++|++++|.++. ++ .+..+++|++|++++|.+.  ..+..+..+++|+.|+
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~N~l~--~~~~~~~~l~~L~~L~  106 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSHNQLQ--SLPLLGQTLPALTVLD  106 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCSSCCS--SCCCCTTTCTTCCEEE
T ss_pred             cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccccccccccc--cccccccccccccccc
Confidence            467777777777766555566677777777777777753 22 2456677777777777766  3445555666666666


Q ss_pred             eecccCCCCcc------------------------hhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCC
Q 038633           95 LSGSFFSGTIP------------------------QSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADL  150 (176)
Q Consensus        95 l~~~~~~~~~p------------------------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l  150 (176)
                      ++++.+....+                        ..+..++.++.+++++|+++  ......+..+++|++|+|++|.+
T Consensus       107 l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~--~~~~~~~~~l~~L~~L~Ls~N~L  184 (266)
T d1p9ag_         107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT--ELPAGLLNGLENLDTLLLQENSL  184 (266)
T ss_dssp             CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS--CCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ccccccceeeccccccccccccccccccccceeccccccccccchhccccccccc--ccCccccccccccceeecccCCC
Confidence            66665543222                        23344555666666666552  22233456666777777777776


Q ss_pred             CCchhhhHHHhhccccCcEeeCcCC
Q 038633          151 SKDAAYWLESISMLRSLVELRLPNC  175 (176)
Q Consensus       151 ~~~~~~~~~~l~~~~~L~~L~l~~n  175 (176)
                      ...++    .+..+++|+.|+|++|
T Consensus       185 ~~lp~----~~~~~~~L~~L~L~~N  205 (266)
T d1p9ag_         185 YTIPK----GFFGSHLLPFAFLHGN  205 (266)
T ss_dssp             CCCCT----TTTTTCCCSEEECCSC
T ss_pred             cccCh----hHCCCCCCCEEEecCC
Confidence            64332    4445666777777766

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.9e-19  Score=128.24  Aligned_cols=137  Identities=20%  Similarity=0.081  Sum_probs=92.2

Q ss_pred             cccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCcc-----------------------ccchhhhcCCCCC
Q 038633            9 SDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELG-----------------------GPISPSLLQLKDL   65 (176)
Q Consensus         9 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~-----------------------~~~~~~l~~l~~L   65 (176)
                      .++..+++|+.|++++|.+....  .+..+++|++|++++|.++                       ...+..+..+.++
T Consensus        49 ~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l  126 (266)
T d1p9ag_          49 ATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL  126 (266)
T ss_dssp             GGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC
T ss_pred             HHhhccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccceeecccccccccc
Confidence            34555666666666666664321  2344555566666665554                       3333333444445


Q ss_pred             cEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEec
Q 038633           66 KYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNL  145 (176)
Q Consensus        66 ~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l  145 (176)
                      ++|++++|.+... .+..+..+++++.+++++|+++...+..++.+++|++|++++|+++..+.   .+..+++|+.|+|
T Consensus       127 ~~L~l~~n~l~~l-~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~---~~~~~~~L~~L~L  202 (266)
T d1p9ag_         127 QELYLKGNELKTL-PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK---GFFGSHLLPFAFL  202 (266)
T ss_dssp             CEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCCCSEEEC
T ss_pred             cccccccccccee-ccccccccccchhcccccccccccCccccccccccceeecccCCCcccCh---hHCCCCCCCEEEe
Confidence            5555555555533 44456678899999999999986666778899999999999999964433   3667899999999


Q ss_pred             cCCCCC
Q 038633          146 GGADLS  151 (176)
Q Consensus       146 ~~n~l~  151 (176)
                      ++|.+.
T Consensus       203 ~~Np~~  208 (266)
T d1p9ag_         203 HGNPWL  208 (266)
T ss_dssp             CSCCBC
T ss_pred             cCCCCC
Confidence            999875

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.79  E-value=8.6e-20  Score=132.73  Aligned_cols=65  Identities=23%  Similarity=0.068  Sum_probs=52.6

Q ss_pred             hhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633          106 QSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN  176 (176)
Q Consensus       106 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~  176 (176)
                      ..++.+++++.|++++|++  ....+..+..+++|++|+|++|++++.+|    .++.+++|+.+++++|+
T Consensus       238 ~~~~~~~~L~~L~Ls~N~l--~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP----~~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         238 GKVGLSKNLNGLDLRNNRI--YGTLPQGLTQLKFLHSLNVSFNNLCGEIP----QGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             GGCCCCTTCCEEECCSSCC--EECCCGGGGGCTTCCEEECCSSEEEEECC----CSTTGGGSCGGGTCSSS
T ss_pred             cccccccccccccCccCee--cccCChHHhCCCCCCEEECcCCcccccCC----CcccCCCCCHHHhCCCc
Confidence            3455677888888888888  33445568899999999999999998877    45778999999999984

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.9e-18  Score=124.02  Aligned_cols=109  Identities=26%  Similarity=0.227  Sum_probs=55.2

Q ss_pred             CCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCc
Q 038633           61 QLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSL  140 (176)
Q Consensus        61 ~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L  140 (176)
                      .+.+|+.+++++|.++.. .+..+..+++|++|++++|++....+..+.++++|+.+++++|.+.  ...+..|..+++|
T Consensus       127 ~~~~L~~l~l~~N~l~~i-~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~--~i~~~~f~~l~~L  203 (284)
T d1ozna_         127 GLAALQYLYLQDNALQAL-PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA--HVHPHAFRDLGRL  203 (284)
T ss_dssp             TCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC--EECTTTTTTCTTC
T ss_pred             hhcccchhhhcccccccc-ChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcccc--ccChhHhhhhhhc
Confidence            333333444444433322 2233444444555555555544223334444555555555555542  2223445666666


Q ss_pred             cEEeccCCCCCCchhhhHHHhhccccCcEeeCcCC
Q 038633          141 KYLNLGGADLSKDAAYWLESISMLRSLVELRLPNC  175 (176)
Q Consensus       141 ~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n  175 (176)
                      ++|++++|.+.+.++.   .++.+++|++|++++|
T Consensus       204 ~~L~l~~N~i~~~~~~---~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         204 MTLYLFANNLSALPTE---ALAPLRALQYLRLNDN  235 (284)
T ss_dssp             CEEECCSSCCSCCCHH---HHTTCTTCCEEECCSS
T ss_pred             cccccccccccccccc---ccccccccCEEEecCC
Confidence            6666666666655554   5566666777777665

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.8e-18  Score=123.07  Aligned_cols=165  Identities=19%  Similarity=0.115  Sum_probs=129.0

Q ss_pred             ecccccccccccceeeccCccccCCCCcCcccCCcceEeecC-CCCccccchhhhcCCCCCcEEEccCccccCCcchhhh
Q 038633            6 FALSDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDA-GHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFI   84 (176)
Q Consensus         6 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~-~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~   84 (176)
                      +....+..++.++.|+++++.+.......+.....+..++.. .+.++...+..|.++++|++|++++|.+... .+..+
T Consensus        47 i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~  125 (284)
T d1ozna_          47 VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL-GPGLF  125 (284)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTT
T ss_pred             CCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecCCcccccc-ccccc
Confidence            333456778888999999888887777777777777777664 4567666678888889999999999888755 56667


Q ss_pred             cCcCCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhcc
Q 038633           85 GSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISML  164 (176)
Q Consensus        85 ~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~  164 (176)
                      ..+.+|+.+++++|++....+..+..+++|+.|++.+|.++  .....++.++++|+.+++++|.+.+..+.   .++.+
T Consensus       126 ~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~--~l~~~~f~~l~~L~~l~l~~N~l~~i~~~---~f~~l  200 (284)
T d1ozna_         126 RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS--SVPERAFRGLHSLDRLLLHQNRVAHVHPH---AFRDL  200 (284)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSSCCCEECTT---TTTTC
T ss_pred             chhcccchhhhccccccccChhHhccccchhhcccccCccc--ccchhhhccccccchhhhhhccccccChh---Hhhhh
Confidence            77888999999999887555567778888999999998884  33345578888999999999988877776   77888


Q ss_pred             ccCcEeeCcCCC
Q 038633          165 RSLVELRLPNCN  176 (176)
Q Consensus       165 ~~L~~L~l~~n~  176 (176)
                      ++|++|++++|+
T Consensus       201 ~~L~~L~l~~N~  212 (284)
T d1ozna_         201 GRLMTLYLFANN  212 (284)
T ss_dssp             TTCCEEECCSSC
T ss_pred             hhcccccccccc
Confidence            899999988874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=1e-17  Score=114.28  Aligned_cols=146  Identities=22%  Similarity=0.166  Sum_probs=104.5

Q ss_pred             cccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccE
Q 038633           13 LLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRY   92 (176)
Q Consensus        13 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~   92 (176)
                      .+++++.|++++|.+...  .....+++|++|++++|.+++..+  +..+++|++|++++|.+..  ++ .+..+++|+.
T Consensus        38 ~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~--~~-~l~~l~~L~~  110 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD--IT-PLANLTNLTG  110 (199)
T ss_dssp             HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC--CG-GGTTCTTCSE
T ss_pred             HhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCccccccccccccccc--cc-cccccccccc
Confidence            456788888888877653  334567788888888888865433  7788888888888887773  33 3667888888


Q ss_pred             EEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeC
Q 038633           93 LNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRL  172 (176)
Q Consensus        93 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l  172 (176)
                      ++++++....  ...+..+++|+.+++++|.+....    .+..+++|+.|++.+|++.+.+     .++++++|++|++
T Consensus       111 L~l~~~~~~~--~~~~~~l~~L~~L~l~~n~l~~~~----~l~~~~~L~~L~l~~n~l~~l~-----~l~~l~~L~~L~l  179 (199)
T d2omxa2         111 LTLFNNQITD--IDPLKNLTNLNRLELSSNTISDIS----ALSGLTSLQQLNFSSNQVTDLK-----PLANLTTLERLDI  179 (199)
T ss_dssp             EECCSSCCCC--CGGGTTCTTCSEEECCSSCCCCCG----GGTTCTTCSEEECCSSCCCCCG-----GGTTCTTCCEEEC
T ss_pred             cccccccccc--ccccchhhhhHHhhhhhhhhcccc----cccccccccccccccccccCCc-----cccCCCCCCEEEC
Confidence            8888877752  234667788888888888774322    2667778888888888877543     4567788888888


Q ss_pred             cCCC
Q 038633          173 PNCN  176 (176)
Q Consensus       173 ~~n~  176 (176)
                      ++|+
T Consensus       180 s~N~  183 (199)
T d2omxa2         180 SSNK  183 (199)
T ss_dssp             CSSC
T ss_pred             CCCC
Confidence            8774

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=2e-17  Score=113.75  Aligned_cols=148  Identities=23%  Similarity=0.162  Sum_probs=98.9

Q ss_pred             cccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcC
Q 038633            9 SDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLK   88 (176)
Q Consensus         9 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~   88 (176)
                      ..+..+++|+.|++++|.+.+..  ....+.+|++|++++|.+++ ++ .+..+++|+.|++++|.+..  + ..+..++
T Consensus        62 ~~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~~--~-~~l~~l~  134 (210)
T d1h6ta2          62 QGIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD--I-NGLVHLP  134 (210)
T ss_dssp             TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC--C-GGGGGCT
T ss_pred             hhHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-cccccccccccccccccccc--c-ccccccc
Confidence            34556677777777777665533  23556677777777777653 33 46667777777777776652  2 3455667


Q ss_pred             CccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCc
Q 038633           89 ELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLV  168 (176)
Q Consensus        89 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~  168 (176)
                      +++.+++++|.+. . +..+..+++|+.+++.+|.+....    .+..+++|++|++++|.+.+. +    .+..+++|+
T Consensus       135 ~l~~l~~~~n~l~-~-~~~~~~l~~L~~l~l~~n~l~~i~----~l~~l~~L~~L~Ls~N~i~~l-~----~l~~l~~L~  203 (210)
T d1h6ta2         135 QLESLYLGNNKIT-D-ITVLSRLTKLDTLSLEDNQISDIV----PLAGLTKLQNLYLSKNHISDL-R----ALAGLKNLD  203 (210)
T ss_dssp             TCCEEECCSSCCC-C-CGGGGGCTTCSEEECCSSCCCCCG----GGTTCTTCCEEECCSSCCCBC-G----GGTTCTTCS
T ss_pred             ccccccccccccc-c-cccccccccccccccccccccccc----cccCCCCCCEEECCCCCCCCC-h----hhcCCCCCC
Confidence            7777777777765 2 234556778888888888774322    267888888888888888754 3    567788888


Q ss_pred             EeeCcC
Q 038633          169 ELRLPN  174 (176)
Q Consensus       169 ~L~l~~  174 (176)
                      +|++++
T Consensus       204 ~L~Ls~  209 (210)
T d1h6ta2         204 VLELFS  209 (210)
T ss_dssp             EEEEEE
T ss_pred             EEEccC
Confidence            888764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=4e-17  Score=111.32  Aligned_cols=145  Identities=19%  Similarity=0.189  Sum_probs=119.1

Q ss_pred             ccccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCc
Q 038633            8 LSDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSL   87 (176)
Q Consensus         8 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l   87 (176)
                      +..+..++++++|++++|.+.+..  .+..+++|++|++++|.+... + .+..++.|++|+++++.+...   ..+..+
T Consensus        55 l~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L~l~~~~~~~~---~~~~~l  127 (199)
T d2omxa2          55 IDGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADI-T-PLANLTNLTGLTLFNNQITDI---DPLKNL  127 (199)
T ss_dssp             CTTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSEEECCSSCCCCC---GGGTTC
T ss_pred             ccccccCCCcCcCccccccccCcc--cccCCcccccccccccccccc-c-ccccccccccccccccccccc---cccchh
Confidence            455778899999999999887653  367888999999999988643 3 478999999999999988743   347789


Q ss_pred             CCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccC
Q 038633           88 KELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSL  167 (176)
Q Consensus        88 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L  167 (176)
                      ++|+.+++++|++. ..+ .+..+++++.+++.+|+++...    .+.++++|++|++++|++.+. +    .++.+++|
T Consensus       128 ~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~l~----~l~~l~~L~~L~ls~N~i~~i-~----~l~~L~~L  196 (199)
T d2omxa2         128 TNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTDLK----PLANLTTLERLDISSNKVSDI-S----VLAKLTNL  196 (199)
T ss_dssp             TTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCCG----GGTTCTTCCEEECCSSCCCCC-G----GGGGCTTC
T ss_pred             hhhHHhhhhhhhhc-ccc-cccccccccccccccccccCCc----cccCCCCCCEEECCCCCCCCC-c----cccCCCCC
Confidence            99999999999986 444 5788999999999999985432    278999999999999999864 3    56778888


Q ss_pred             cEe
Q 038633          168 VEL  170 (176)
Q Consensus       168 ~~L  170 (176)
                      ++|
T Consensus       197 ~~L  199 (199)
T d2omxa2         197 ESL  199 (199)
T ss_dssp             SEE
T ss_pred             CcC
Confidence            875

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.74  E-value=1.4e-17  Score=112.96  Aligned_cols=130  Identities=18%  Similarity=0.100  Sum_probs=102.0

Q ss_pred             ceeeccCccccCCCCcCcccCCcceEeecCCCCccc-cchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEee
Q 038633           18 FALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGG-PISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLS   96 (176)
Q Consensus        18 ~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~   96 (176)
                      ++++.+++.+... |...  ..++++|++++|.|+. ..+..|.++++|++|++++|.+... .+..+..+++|++|+++
T Consensus        11 ~~v~Cs~~~L~~i-P~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~-~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          11 TTVDCTGRGLKEI-PRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCSSC-CSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECC
T ss_pred             CEEEEeCCCcCcc-CCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccc-cccccccccccceeeec
Confidence            4677777666544 3222  2578899999999975 4456678899999999999999876 77788889999999999


Q ss_pred             cccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCc
Q 038633           97 GSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKD  153 (176)
Q Consensus        97 ~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  153 (176)
                      +|++....|..|.++++|++|++++|.++  .....+|..+++|++++|++|.+...
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~--~i~~~~f~~l~~L~~l~L~~N~~~~~  141 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQIS--CVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCC--EECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             cccccccCHHHHhCCCcccccccCCcccc--ccCHHHhcCCcccccccccccccccc
Confidence            99998555567888999999999999984  34445688899999999999988644

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.74  E-value=1e-18  Score=118.78  Aligned_cols=112  Identities=19%  Similarity=0.070  Sum_probs=99.2

Q ss_pred             ccccceeeccCccccCCC-CcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccE
Q 038633           14 LSRIFALSLLRCCSVGSA-LAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRY   92 (176)
Q Consensus        14 ~~~l~~l~l~~~~~~~~~-~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~   92 (176)
                      ..+++.|++++|.|.... ...+..+.+|++|++++|.+....+..+..+++|++|++++|.+... .|..|..+++|++
T Consensus        28 p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l-~~~~F~~l~~L~~  106 (192)
T d1w8aa_          28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI-SNKMFLGLHQLKT  106 (192)
T ss_dssp             CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEE-CSSSSTTCTTCCE
T ss_pred             CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccccccc-CHHHHhCCCcccc
Confidence            468999999999997644 45678899999999999999998999999999999999999999965 6667889999999


Q ss_pred             EEeecccCCCCcchhccCCCCCCEEEccCCccCc
Q 038633           93 LNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQS  126 (176)
Q Consensus        93 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~  126 (176)
                      |++++|++....+..|..+++|+++++++|++..
T Consensus       107 L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_         107 LNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             EECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cccCCccccccCHHHhcCCccccccccccccccc
Confidence            9999999985556778899999999999999843

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=7.1e-17  Score=110.96  Aligned_cols=146  Identities=25%  Similarity=0.165  Sum_probs=120.4

Q ss_pred             cccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccE
Q 038633           13 LLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRY   92 (176)
Q Consensus        13 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~   92 (176)
                      .+.+++.|++++|.+....  ....+++|++|++++|.+++..  .+..+++|++|++++|.++  .+| .+..+++|+.
T Consensus        44 ~L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~--~l~-~l~~l~~L~~  116 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVK--DLS-SLKDLKKLKS  116 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC--CGG-GGTTCTTCCE
T ss_pred             HhcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccc--ccc-cccccccccc
Confidence            4678999999999887643  3567889999999999997643  3678999999999999998  355 5788999999


Q ss_pred             EEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeC
Q 038633           93 LNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRL  172 (176)
Q Consensus        93 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l  172 (176)
                      |++++|.+. .. ..+..++.++.+++.+|.+.....    +..+++|+++++++|++.+..     .++.+++|++|++
T Consensus       117 L~l~~~~~~-~~-~~l~~l~~l~~l~~~~n~l~~~~~----~~~l~~L~~l~l~~n~l~~i~-----~l~~l~~L~~L~L  185 (210)
T d1h6ta2         117 LSLEHNGIS-DI-NGLVHLPQLESLYLGNNKITDITV----LSRLTKLDTLSLEDNQISDIV-----PLAGLTKLQNLYL  185 (210)
T ss_dssp             EECTTSCCC-CC-GGGGGCTTCCEEECCSSCCCCCGG----GGGCTTCSEEECCSSCCCCCG-----GGTTCTTCCEEEC
T ss_pred             ccccccccc-cc-cccccccccccccccccccccccc----ccccccccccccccccccccc-----cccCCCCCCEEEC
Confidence            999999986 33 457789999999999998853332    567899999999999998653     4678999999999


Q ss_pred             cCCC
Q 038633          173 PNCN  176 (176)
Q Consensus       173 ~~n~  176 (176)
                      ++|+
T Consensus       186 s~N~  189 (210)
T d1h6ta2         186 SKNH  189 (210)
T ss_dssp             CSSC
T ss_pred             CCCC
Confidence            9984

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.73  E-value=4.6e-17  Score=117.67  Aligned_cols=157  Identities=19%  Similarity=0.100  Sum_probs=102.1

Q ss_pred             ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCc--------------
Q 038633           14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFK--------------   79 (176)
Q Consensus        14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~--------------   79 (176)
                      .++++.|++++|.+.+..+..+..+.+|++|++++|.+....|.+|.+++.|++|++++|+++...              
T Consensus        30 ~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~  109 (305)
T d1xkua_          30 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHE  109 (305)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCS
T ss_pred             CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccchhhhhhhhhccc
Confidence            467999999999888776667888899999999999998777888999999999999888765110              


Q ss_pred             --------------------------------chhhhcCcCCccEEEeecccCC---------------------CCcch
Q 038633           80 --------------------------------VPEFIGSLKELRYLNLSGSFFS---------------------GTIPQ  106 (176)
Q Consensus        80 --------------------------------~p~~~~~l~~L~~L~l~~~~~~---------------------~~~p~  106 (176)
                                                      .+..+..+++|+.+++++|.+.                     ...+.
T Consensus       110 n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~~~~~~~  189 (305)
T d1xkua_         110 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAA  189 (305)
T ss_dssp             SCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTG
T ss_pred             cchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcccCCccCEEECCCCcCCCCChh
Confidence                                            1122333444555555555443                     12233


Q ss_pred             hccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633          107 SLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN  176 (176)
Q Consensus       107 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~  176 (176)
                      .+..++.++.|++++|.+.  ......+..+++|++|+|++|.+... |.   .+..+++|+.|++++|+
T Consensus       190 ~~~~~~~l~~L~~s~n~l~--~~~~~~~~~l~~L~~L~L~~N~L~~l-p~---~l~~l~~L~~L~Ls~N~  253 (305)
T d1xkua_         190 SLKGLNNLAKLGLSFNSIS--AVDNGSLANTPHLRELHLNNNKLVKV-PG---GLADHKYIQVVYLHNNN  253 (305)
T ss_dssp             GGTTCTTCCEEECCSSCCC--EECTTTGGGSTTCCEEECCSSCCSSC-CT---TTTTCSSCCEEECCSSC
T ss_pred             Hhhcccccccccccccccc--ccccccccccccceeeeccccccccc-cc---ccccccCCCEEECCCCc
Confidence            3444455555555555552  22223455666777777777776644 32   55667777777777663

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=2e-17  Score=104.57  Aligned_cols=122  Identities=27%  Similarity=0.274  Sum_probs=89.8

Q ss_pred             eEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEccC
Q 038633           42 TYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNN  121 (176)
Q Consensus        42 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~  121 (176)
                      ++|++++|.++. ++ .+..++.|++|++++|.+.  .+|+.+..+++|++|++++|++. .+| .+..+++|+++++++
T Consensus         1 R~L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~--~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCSS-CC-CGGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCCC-Cc-ccccCCCCCEEECCCCccC--cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCC
Confidence            468888888863 33 3778888999999999888  57777888899999999999887 445 477888999999999


Q ss_pred             CccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEe
Q 038633          122 FLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVEL  170 (176)
Q Consensus       122 n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L  170 (176)
                      |++..... ...+..+++|++|++++|.+...+.-.......+|+|+.+
T Consensus        75 N~i~~~~~-~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          75 NRLQQSAA-IQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SCCCSSST-TGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CccCCCCC-chhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            98854332 2346788899999999998864431101144556777765

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1e-17  Score=110.69  Aligned_cols=132  Identities=21%  Similarity=0.111  Sum_probs=78.9

Q ss_pred             ccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCC
Q 038633           36 FRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLL  115 (176)
Q Consensus        36 ~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~  115 (176)
                      .....+++|++++|.|+. ++..+..+++|+.|++++|.+.  .++ .+..+++|++|++++|++....+..+..+++|+
T Consensus        15 ~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~--~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR--KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             ECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCC--EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             cCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCC--ccC-CcccCcchhhhhcccccccCCCccccccccccc
Confidence            344456677777777753 3455556677777777777766  332 356667777777777777622223344567777


Q ss_pred             EEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeC
Q 038633          116 YLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRL  172 (176)
Q Consensus       116 ~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l  172 (176)
                      .|++++|+++.... ...+..+++|++|++++|.+...+..-...+..+|+|+.||-
T Consensus        91 ~L~L~~N~i~~~~~-l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          91 ELILTNNSLVELGD-LDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             EEECCSCCCCCGGG-GGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             cceecccccccccc-ccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            77777777643322 123566777777777777765443211124556677777653

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=3.7e-16  Score=115.68  Aligned_cols=151  Identities=24%  Similarity=0.204  Sum_probs=103.3

Q ss_pred             cccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCC------------
Q 038633           11 LHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGF------------   78 (176)
Q Consensus        11 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~------------   78 (176)
                      ...+++++.+++.+|.+...  .....+.+++.|++++|.+++..+  +..+++|++|+++++.+...            
T Consensus       215 ~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l  290 (384)
T d2omza2         215 LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNL  290 (384)
T ss_dssp             GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred             ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCCc--ccccccCCEeeccCcccCCCCccccccccccc
Confidence            34456666666666655442  233445566666666666654322  45556666666666554421            


Q ss_pred             -------cchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCC
Q 038633           79 -------KVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLS  151 (176)
Q Consensus        79 -------~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~  151 (176)
                             .....+..++++++|++++|++.+ .+ .+..+++|+.|++++|+++...    .+..+++|++|++++|+++
T Consensus       291 ~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~-l~-~l~~l~~L~~L~L~~n~l~~l~----~l~~l~~L~~L~l~~N~l~  364 (384)
T d2omza2         291 ELNENQLEDISPISNLKNLTYLTLYFNNISD-IS-PVSSLTKLQRLFFANNKVSDVS----SLANLTNINWLSAGHNQIS  364 (384)
T ss_dssp             ECCSSCCSCCGGGGGCTTCSEEECCSSCCSC-CG-GGGGCTTCCEEECCSSCCCCCG----GGGGCTTCCEEECCSSCCC
T ss_pred             cccccccccccccchhcccCeEECCCCCCCC-Cc-ccccCCCCCEEECCCCCCCCCh----hHcCCCCCCEEECCCCcCC
Confidence                   012345667889999999999874 33 3778999999999999885432    3788999999999999998


Q ss_pred             CchhhhHHHhhccccCcEeeCcCCC
Q 038633          152 KDAAYWLESISMLRSLVELRLPNCN  176 (176)
Q Consensus       152 ~~~~~~~~~l~~~~~L~~L~l~~n~  176 (176)
                      +.+     .++++++|+.|++++|.
T Consensus       365 ~l~-----~l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         365 DLT-----PLANLTRITQLGLNDQA  384 (384)
T ss_dssp             BCG-----GGTTCTTCSEEECCCEE
T ss_pred             CCh-----hhccCCCCCEeeCCCCc
Confidence            765     46788999999999873

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=7.7e-17  Score=106.46  Aligned_cols=136  Identities=16%  Similarity=0.043  Sum_probs=106.4

Q ss_pred             cccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcC
Q 038633            9 SDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLK   88 (176)
Q Consensus         9 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~   88 (176)
                      +.+..+..++.|++++|.|... +..+..+.+|+.|++++|.++..  ..+..+++|++|++++|.+... .+..+..++
T Consensus        12 ~~~~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l-~~~~~~~l~   87 (162)
T d1a9na_          12 AQYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRI-GEGLDQALP   87 (162)
T ss_dssp             CEEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEE-CSCHHHHCT
T ss_pred             HhccCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCC-Ccccccccc
Confidence            4456677899999999999876 34456788999999999999754  3478899999999999999954 444566799


Q ss_pred             CccEEEeecccCCCCcc--hhccCCCCCCEEEccCCccCcccc-cccccCCCCCccEEeccCCCCC
Q 038633           89 ELRYLNLSGSFFSGTIP--QSLGNLTNLLYLDLNNFLDQSNQI-GLGWLSGLPSLKYLNLGGADLS  151 (176)
Q Consensus        89 ~L~~L~l~~~~~~~~~p--~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~l~~L~~L~l~~n~l~  151 (176)
                      +|++|++++|++. .++  ..+..+++|+++++.+|++...+. ....+..+++|++||  +..+.
T Consensus        88 ~L~~L~L~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD--~~~i~  150 (162)
T d1a9na_          88 DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD--FQKVK  150 (162)
T ss_dssp             TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET--TEECC
T ss_pred             ccccceecccccc-ccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC--CCCCC
Confidence            9999999999997 444  467889999999999999843322 123467889999986  44444

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=3.3e-15  Score=103.59  Aligned_cols=59  Identities=19%  Similarity=0.036  Sum_probs=25.1

Q ss_pred             ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCcccc
Q 038633           14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFK   76 (176)
Q Consensus        14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~   76 (176)
                      +.+++.|++.+|.+...  +....+++|++|++++|.+++..+  +..+++++++++++|.++
T Consensus        40 l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~   98 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK   98 (227)
T ss_dssp             HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS
T ss_pred             cCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc--cccccccccccccccccc
Confidence            34444444444444332  223344444444444444433221  344444444444444433

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=6.9e-16  Score=97.37  Aligned_cols=101  Identities=23%  Similarity=0.265  Sum_probs=86.5

Q ss_pred             cEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEec
Q 038633           66 KYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNL  145 (176)
Q Consensus        66 ~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l  145 (176)
                      ++|++++|.++  .++ .+..+++|++|++++|++. .+|+.++.+++|+.|++++|.++..+    .+..+++|++|++
T Consensus         1 R~L~Ls~n~l~--~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l~----~~~~l~~L~~L~l   72 (124)
T d1dcea3           1 RVLHLAHKDLT--VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD----GVANLPRLQELLL   72 (124)
T ss_dssp             SEEECTTSCCS--SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG----GGTTCSSCCEEEC
T ss_pred             CEEEcCCCCCC--CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccccC----ccccccccCeEEC
Confidence            57999999999  354 4788999999999999997 77888999999999999999996443    3789999999999


Q ss_pred             cCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633          146 GGADLSKDAAYWLESISMLRSLVELRLPNCN  176 (176)
Q Consensus       146 ~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~  176 (176)
                      ++|++...+..  ..++.+++|+.|++++|+
T Consensus        73 ~~N~i~~~~~~--~~l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          73 CNNRLQQSAAI--QPLVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             CSSCCCSSSTT--GGGGGCTTCCEEECTTSG
T ss_pred             CCCccCCCCCc--hhhcCCCCCCEEECCCCc
Confidence            99999866531  267889999999999984

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.62  E-value=1.1e-14  Score=105.01  Aligned_cols=137  Identities=15%  Similarity=0.083  Sum_probs=104.2

Q ss_pred             ccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCC
Q 038633           10 DLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKE   89 (176)
Q Consensus        10 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~   89 (176)
                      .+..++.++.+++.+|.+.....   ....+++.|++++|..+...+..+.+++.+++|++++|.+... .+..+..+++
T Consensus       145 ~~~~l~~L~~l~l~~n~l~~l~~---~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~-~~~~~~~l~~  220 (305)
T d1xkua_         145 AFQGMKKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV-DNGSLANTPH  220 (305)
T ss_dssp             GGGGCTTCCEEECCSSCCCSCCS---SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE-CTTTGGGSTT
T ss_pred             ccccccccCccccccCCccccCc---ccCCccCEEECCCCcCCCCChhHhhcccccccccccccccccc-cccccccccc
Confidence            44556778888888887755322   2356788888988888888888888888899999998888865 6677788888


Q ss_pred             ccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccc----cccccCCCCCccEEeccCCCCC
Q 038633           90 LRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQI----GLGWLSGLPSLKYLNLGGADLS  151 (176)
Q Consensus        90 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~~~l~~L~~L~l~~n~l~  151 (176)
                      |++|++++|.+. .+|..+..+++|+.|++++|+++....    .......+.+|+.|++++|.+.
T Consensus       221 L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         221 LRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             CCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            999999999887 678788888899999999888853221    1123456678888999988875

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=2.2e-14  Score=99.28  Aligned_cols=151  Identities=23%  Similarity=0.266  Sum_probs=122.2

Q ss_pred             ccccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCc
Q 038633            8 LSDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSL   87 (176)
Q Consensus         8 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l   87 (176)
                      ++.+..+++|+.|++++|.+.+..  .+..+.+++++++++|.++. + ..+..+++|++++++++.....   ..+...
T Consensus        56 l~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~l~l~~~~~~~~---~~~~~~  128 (227)
T d1h6ua2          56 IEGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQITDV---TPLAGL  128 (227)
T ss_dssp             CTTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSCCCCC---GGGTTC
T ss_pred             chhHhcCCCCcEeecCCceeeccc--cccccccccccccccccccc-c-cccccccccccccccccccccc---chhccc
Confidence            456778999999999999887653  36788899999999998864 3 3578899999999999987743   345667


Q ss_pred             CCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccC
Q 038633           88 KELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSL  167 (176)
Q Consensus        88 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L  167 (176)
                      +.++.+.++++.+...  ..+..+++|+++++.+|.+....    .+..+++|++|++++|++.+. +    .++.+++|
T Consensus       129 ~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~----~l~~l~~L~~L~Ls~n~l~~l-~----~l~~l~~L  197 (227)
T d1h6ua2         129 SNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLT----PLANLSKLTTLKADDNKISDI-S----PLASLPNL  197 (227)
T ss_dssp             TTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCCG----GGTTCTTCCEEECCSSCCCCC-G----GGGGCTTC
T ss_pred             cchhhhhchhhhhchh--hhhccccccccccccccccccch----hhcccccceecccCCCccCCC-h----hhcCCCCC
Confidence            8899999999888632  34667899999999999884332    278899999999999999864 3    46789999


Q ss_pred             cEeeCcCCC
Q 038633          168 VELRLPNCN  176 (176)
Q Consensus       168 ~~L~l~~n~  176 (176)
                      ++|++++|+
T Consensus       198 ~~L~Ls~N~  206 (227)
T d1h6ua2         198 IEVHLKNNQ  206 (227)
T ss_dssp             CEEECTTSC
T ss_pred             CEEECcCCc
Confidence            999999985

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.59  E-value=3.1e-14  Score=105.16  Aligned_cols=152  Identities=22%  Similarity=0.143  Sum_probs=116.3

Q ss_pred             cccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcC
Q 038633            9 SDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLK   88 (176)
Q Consensus         9 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~   88 (176)
                      .....++++..+++++|.+.+..+  .....+++.|++++|.+++ . ..+..+++|+.+++++|.+.+.  + .+..++
T Consensus       191 ~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~--~-~~~~~~  263 (384)
T d2omza2         191 SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNL--A-PLSGLT  263 (384)
T ss_dssp             GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--G-GGTTCT
T ss_pred             cccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCC--C-cccccc
Confidence            345667889999999998877543  4666789999999999875 2 4678899999999999998843  3 377889


Q ss_pred             CccEEEeecccCCCCc--------------------chhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCC
Q 038633           89 ELRYLNLSGSFFSGTI--------------------PQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGA  148 (176)
Q Consensus        89 ~L~~L~l~~~~~~~~~--------------------p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n  148 (176)
                      +|++++++++.+.+..                    +..+..+++++.+++++|+++...    .+..+++|++|++++|
T Consensus       264 ~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~----~l~~l~~L~~L~L~~n  339 (384)
T d2omza2         264 KLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS----PVSSLTKLQRLFFANN  339 (384)
T ss_dssp             TCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCG----GGGGCTTCCEEECCSS
T ss_pred             cCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCCCc----ccccCCCCCEEECCCC
Confidence            9999999998876321                    122445567777777777774322    2678899999999999


Q ss_pred             CCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633          149 DLSKDAAYWLESISMLRSLVELRLPNCN  176 (176)
Q Consensus       149 ~l~~~~~~~~~~l~~~~~L~~L~l~~n~  176 (176)
                      .+.+. +    .++.+++|++|++++|+
T Consensus       340 ~l~~l-~----~l~~l~~L~~L~l~~N~  362 (384)
T d2omza2         340 KVSDV-S----SLANLTNINWLSAGHNQ  362 (384)
T ss_dssp             CCCCC-G----GGGGCTTCCEEECCSSC
T ss_pred             CCCCC-h----hHcCCCCCCEEECCCCc
Confidence            98754 3    56788999999999884

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.2e-14  Score=102.68  Aligned_cols=157  Identities=22%  Similarity=0.214  Sum_probs=77.9

Q ss_pred             cccceeeccCccccCCC-CcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCc-cccCCcchhhhcCcCCccE
Q 038633           15 SRIFALSLLRCCSVGSA-LAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMN-NFKGFKVPEFIGSLKELRY   92 (176)
Q Consensus        15 ~~l~~l~l~~~~~~~~~-~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~p~~~~~l~~L~~   92 (176)
                      ..++.|++++|.+.... ...+..+++|++|+++++.+++..+..+..+++|++|++++| .++..........+++|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            45566666665554322 223445556666666666665555555556666666666654 2332111122234555666


Q ss_pred             EEeeccc-CCC----------------------------C-cchhccCCCCCCEEEccCCccCcccccccccCCCCCccE
Q 038633           93 LNLSGSF-FSG----------------------------T-IPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKY  142 (176)
Q Consensus        93 L~l~~~~-~~~----------------------------~-~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~  142 (176)
                      |++++|. +.+                            . +...+..+++|++|++++|..- .......+..+++|++
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~i-td~~~~~l~~~~~L~~  204 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML-KNDCFQEFFQLNYLQH  204 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTC-CGGGGGGGGGCTTCCE
T ss_pred             cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCC-CchhhhhhcccCcCCE
Confidence            6655542 210                            0 1111224456666666655421 1122233556666677


Q ss_pred             EeccCC-CCCCchhhhHHHhhccccCcEeeCcCC
Q 038633          143 LNLGGA-DLSKDAAYWLESISMLRSLVELRLPNC  175 (176)
Q Consensus       143 L~l~~n-~l~~~~~~~~~~l~~~~~L~~L~l~~n  175 (176)
                      |+++++ .+.+....   .++.+++|+.|+++++
T Consensus       205 L~L~~C~~i~~~~l~---~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         205 LSLSRCYDIIPETLL---ELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             EECTTCTTCCGGGGG---GGGGCTTCCEEECTTS
T ss_pred             EECCCCCCCChHHHH---HHhcCCCCCEEeeeCC
Confidence            776664 34333222   4556666777766654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2e-13  Score=89.19  Aligned_cols=110  Identities=17%  Similarity=-0.008  Sum_probs=80.4

Q ss_pred             cccccceeeccCccccCCCCcCcccCCcceEeecCCC-CccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCcc
Q 038633           13 LLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGH-ELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELR   91 (176)
Q Consensus        13 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~   91 (176)
                      .+....+++..++...+. +......+++++|++.++ .++...+..|.++++|++|++++|.++.. .|..|..+++|+
T Consensus         6 ~c~~~~~l~c~~~~~~~~-p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i-~~~~f~~l~~L~   83 (156)
T d2ifga3           6 CPHGSSGLRCTRDGALDS-LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV-APDAFHFTPRLS   83 (156)
T ss_dssp             CCSSSSCEECCSSCCCTT-TTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE-CTTGGGSCSCCC
T ss_pred             CcCCCCeEEecCCCCccC-cccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCc-cccccccccccc
Confidence            344555677776655543 455666778888888766 47766677788888888888888888865 566788888888


Q ss_pred             EEEeecccCCCCcchhccCCCCCCEEEccCCccC
Q 038633           92 YLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQ  125 (176)
Q Consensus        92 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~  125 (176)
                      +|++++|++. .+|........+++|++++|++.
T Consensus        84 ~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          84 RLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             EEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ceeccCCCCc-ccChhhhccccccccccCCCccc
Confidence            8888888887 55554444456888888888873

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.9e-13  Score=95.19  Aligned_cols=86  Identities=15%  Similarity=0.046  Sum_probs=64.6

Q ss_pred             cccceeeccCccccCCCCcCcccCCcceEeecCCCCccccc-hhhhcCCCCCcEEEccC-ccccCCcchhhhcCcCCccE
Q 038633           15 SRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPI-SPSLLQLKDLKYLDLSM-NNFKGFKVPEFIGSLKELRY   92 (176)
Q Consensus        15 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~-~~~~~~~~p~~~~~l~~L~~   92 (176)
                      ++++.|++++|.+.......+..+.+|++|++++|.+...+ +..|.+++.++++++.. +.+... .+..+..+++|++
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~-~~~~~~~l~~L~~  107 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI-NPEAFQNLPNLQY  107 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEE-CTTSEECCTTCCE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccc-ccccccccccccc
Confidence            57888999988887665566778888999999888776543 45677888888888754 455543 5566778888888


Q ss_pred             EEeecccCC
Q 038633           93 LNLSGSFFS  101 (176)
Q Consensus        93 L~l~~~~~~  101 (176)
                      ++++++++.
T Consensus       108 l~l~~~~l~  116 (242)
T d1xwdc1         108 LLISNTGIK  116 (242)
T ss_dssp             EEEESCCCC
T ss_pred             cccchhhhc
Confidence            888888775

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.47  E-value=4.1e-16  Score=106.18  Aligned_cols=132  Identities=23%  Similarity=0.163  Sum_probs=93.2

Q ss_pred             CcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCC
Q 038633           34 QPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTN  113 (176)
Q Consensus        34 ~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~  113 (176)
                      ....+.+|++|++++|.|+. ++ .+..+++|++|++++|.+.  .+|.....+++|++|++++|++. .++ .+..+++
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~--~i~~~~~~~~~L~~L~l~~N~i~-~l~-~~~~l~~  116 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQIA-SLS-GIEKLVN  116 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC--SCSSHHHHHHHCCEEECSEEECC-CHH-HHHHHHH
T ss_pred             HHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc--ccccccccccccccccccccccc-ccc-ccccccc
Confidence            45667788888888888864 33 4778888899999888887  45655555667888888888886 443 4667788


Q ss_pred             CCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhh-------HHHhhccccCcEeeC
Q 038633          114 LLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYW-------LESISMLRSLVELRL  172 (176)
Q Consensus       114 L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------~~~l~~~~~L~~L~l  172 (176)
                      |+.|++++|+++.... ...+..+++|+.|++++|++....+..       ...+..+|+|+.||-
T Consensus       117 L~~L~L~~N~i~~~~~-~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD~  181 (198)
T d1m9la_         117 LRVLYMSNNKITNWGE-IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG  181 (198)
T ss_dssp             SSEEEESEEECCCHHH-HHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEESS
T ss_pred             ccccccccchhccccc-cccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeCC
Confidence            8889998888853322 133678888889998888765433211       012566788888763

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.45  E-value=2.5e-15  Score=102.19  Aligned_cols=124  Identities=20%  Similarity=0.222  Sum_probs=98.9

Q ss_pred             ceEeecCCC--CccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEE
Q 038633           41 DTYEDDAGH--ELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLD  118 (176)
Q Consensus        41 l~~L~l~~n--~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~  118 (176)
                      ++.+++.+.  .+ ..++..+..+++|++|++++|.+..  ++ .+..+++|++|++++|++. .+|.....++.|+.|+
T Consensus        25 ~~~~~l~~~~~~i-~~l~~sl~~L~~L~~L~Ls~n~I~~--i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~   99 (198)
T d1m9la_          25 AEKVELHGMIPPI-EKMDATLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELW   99 (198)
T ss_dssp             CSCEECCBCCTTC-CCCHHHHHHTTTCCEEECSEEEESC--CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEE
T ss_pred             cceeeeecccCch-hhhhhHHhcccccceeECcccCCCC--cc-cccCCccccChhhcccccc-cccccccccccccccc
Confidence            444566554  23 3567889999999999999999994  54 5788999999999999997 6666555567899999


Q ss_pred             ccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCC
Q 038633          119 LNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNC  175 (176)
Q Consensus       119 l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n  175 (176)
                      +.+|.++...    .+..+++|++|++++|.+.....  +..++.+++|+.|++++|
T Consensus       100 l~~N~i~~l~----~~~~l~~L~~L~L~~N~i~~~~~--~~~l~~l~~L~~L~L~~N  150 (198)
T d1m9la_         100 ISYNQIASLS----GIEKLVNLRVLYMSNNKITNWGE--IDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             CSEEECCCHH----HHHHHHHSSEEEESEEECCCHHH--HHHHTTTTTCSEEEECSS
T ss_pred             cccccccccc----cccccccccccccccchhccccc--cccccCCCccceeecCCC
Confidence            9999985432    26778999999999999986543  236788999999999998

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=8.2e-13  Score=86.25  Aligned_cols=105  Identities=21%  Similarity=0.098  Sum_probs=84.7

Q ss_pred             eEeecCCCCccccchhhhcCCCCCcEEEccCcc-ccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEcc
Q 038633           42 TYEDDAGHELGGPISPSLLQLKDLKYLDLSMNN-FKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLN  120 (176)
Q Consensus        42 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~  120 (176)
                      +.++..++.+. ..|..+..++++++|++++++ +... .+..|..+++|+.|++++|++....+.+|..+++|+.|+++
T Consensus        11 ~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CeEEecCCCCc-cCcccccCccccCeeecCCCcccccc-CchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            34777777775 567888899999999998764 7754 55678899999999999999985556789999999999999


Q ss_pred             CCccCcccccccccCCCCCccEEeccCCCCC
Q 038633          121 NFLDQSNQIGLGWLSGLPSLKYLNLGGADLS  151 (176)
Q Consensus       121 ~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~  151 (176)
                      +|+++..+.  ..+... +|+.|+|++|.+.
T Consensus        89 ~N~l~~l~~--~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          89 FNALESLSW--KTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             SSCCSCCCS--TTTCSC-CCCEEECCSSCCC
T ss_pred             CCCCcccCh--hhhccc-cccccccCCCccc
Confidence            999954333  334444 6999999999985

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=4.4e-12  Score=88.14  Aligned_cols=161  Identities=12%  Similarity=-0.082  Sum_probs=96.0

Q ss_pred             ccccccccceeeccCccccCCCC-cCcccCCcceEeecC-CCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCc
Q 038633           10 DLHLLSRIFALSLLRCCSVGSAL-AQPFRDSFDTYEDDA-GHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSL   87 (176)
Q Consensus        10 ~~~~~~~l~~l~l~~~~~~~~~~-~~~~~~~~l~~L~l~-~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l   87 (176)
                      .+..+++|++|++++|.+...++ ..+..+..++++.+. .+.+....+..|.++++|+++++++|.+........+..+
T Consensus        48 ~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l  127 (242)
T d1xwdc1          48 AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL  127 (242)
T ss_dssp             TTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBS
T ss_pred             Hhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccc
Confidence            45566777777777777655433 345556666666654 3566666666677777777777777776633111233345


Q ss_pred             CCccEEEeecccCCCCcchhccCC-CCCCEEEccCCccCcccccccccCCCCCccE-EeccCCCCCCchhhhHHHhhccc
Q 038633           88 KELRYLNLSGSFFSGTIPQSLGNL-TNLLYLDLNNFLDQSNQIGLGWLSGLPSLKY-LNLGGADLSKDAAYWLESISMLR  165 (176)
Q Consensus        88 ~~L~~L~l~~~~~~~~~p~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~-L~l~~n~l~~~~~~~~~~l~~~~  165 (176)
                      ..+..+...++++....+..+..+ ..++.+++.+|+++....  ..+ ...+++. +++.+|++...++.   .+.+++
T Consensus       128 ~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~--~~~-~~~~l~~~~~l~~n~l~~l~~~---~f~~l~  201 (242)
T d1xwdc1         128 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN--CAF-NGTQLDELNLSDNNNLEELPND---VFHGAS  201 (242)
T ss_dssp             SCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECT--TTT-TTCCEEEEECTTCTTCCCCCTT---TTTTSC
T ss_pred             cccccccccccccccccccccccccccceeeeccccccccccc--ccc-cchhhhccccccccccccccHH---HhcCCC
Confidence            555555555555542223334443 356677777776632222  223 3344444 45677777766554   578889


Q ss_pred             cCcEeeCcCCC
Q 038633          166 SLVELRLPNCN  176 (176)
Q Consensus       166 ~L~~L~l~~n~  176 (176)
                      +|++|++++|+
T Consensus       202 ~L~~L~Ls~N~  212 (242)
T d1xwdc1         202 GPVILDISRTR  212 (242)
T ss_dssp             CCSEEECTTSC
T ss_pred             CCCEEECCCCc
Confidence            99999999884

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=6.3e-12  Score=89.62  Aligned_cols=154  Identities=23%  Similarity=0.196  Sum_probs=99.4

Q ss_pred             cceeeccCccccCCCCcCcccCCcceEeecCCCCcccc-chhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEe
Q 038633           17 IFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGP-ISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNL   95 (176)
Q Consensus        17 l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l   95 (176)
                      +..+++....+... .........+++|+++++.+++. +...+..+++|++|++++|.+... .+..+..+++|++|++
T Consensus        25 ~~~lrl~~~~~~~~-~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~-~~~~l~~~~~L~~L~L  102 (284)
T d2astb2          25 VIAFRCPRSFMDQP-LAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDP-IVNTLAKNSNLVRLNL  102 (284)
T ss_dssp             CSEEECTTCEECSC-CCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHH-HHHHHTTCTTCSEEEC
T ss_pred             ceEeeccccccccc-hhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcH-HHHHHhcCCCCcCccc
Confidence            44555555444322 22334556899999999988755 345577899999999999998875 7788889999999999


Q ss_pred             ecc-cCCCCc-chhccCCCCCCEEEccCCcc-Ccccc---------------------------cccccCCCCCccEEec
Q 038633           96 SGS-FFSGTI-PQSLGNLTNLLYLDLNNFLD-QSNQI---------------------------GLGWLSGLPSLKYLNL  145 (176)
Q Consensus        96 ~~~-~~~~~~-p~~~~~l~~L~~L~l~~n~~-~~~~~---------------------------~~~~~~~l~~L~~L~l  145 (176)
                      ++| .+++.. ......+++|+.|++++|.. .....                           ......++++|++|++
T Consensus       103 s~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L  182 (284)
T d2astb2         103 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL  182 (284)
T ss_dssp             TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred             cccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccccccccccccccccccccccc
Confidence            996 444221 22234678899999988642 10000                           0011234566777777


Q ss_pred             cCCC-CCCchhhhHHHhhccccCcEeeCcCC
Q 038633          146 GGAD-LSKDAAYWLESISMLRSLVELRLPNC  175 (176)
Q Consensus       146 ~~n~-l~~~~~~~~~~l~~~~~L~~L~l~~n  175 (176)
                      ++|. +.+....   .+.++++|++|++++|
T Consensus       183 ~~~~~itd~~~~---~l~~~~~L~~L~L~~C  210 (284)
T d2astb2         183 SDSVMLKNDCFQ---EFFQLNYLQHLSLSRC  210 (284)
T ss_dssp             TTCTTCCGGGGG---GGGGCTTCCEEECTTC
T ss_pred             ccccCCCchhhh---hhcccCcCCEEECCCC
Confidence            7654 3333332   5566777777777765

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.25  E-value=2.9e-12  Score=93.59  Aligned_cols=41  Identities=10%  Similarity=-0.117  Sum_probs=21.6

Q ss_pred             ccccccceeeccCccccCCCCc----CcccCCcceEeecCCCCcc
Q 038633           12 HLLSRIFALSLLRCCSVGSALA----QPFRDSFDTYEDDAGHELG   52 (176)
Q Consensus        12 ~~~~~l~~l~l~~~~~~~~~~~----~~~~~~~l~~L~l~~n~l~   52 (176)
                      ..+++++.|++++|.+......    .....++|++|++++|.+.
T Consensus        90 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~  134 (344)
T d2ca6a1          90 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG  134 (344)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             hhCCCcccccccccccccccccchhhhhcccccchheeccccccc
Confidence            3456666777776665432211    1223455666666666543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.15  E-value=3.3e-11  Score=87.87  Aligned_cols=65  Identities=9%  Similarity=-0.081  Sum_probs=38.0

Q ss_pred             ccccccceeeccCccccCCCC----------cCcccCCcceEeecCCCCcccc----chhhhcCCCCCcEEEccCcccc
Q 038633           12 HLLSRIFALSLLRCCSVGSAL----------AQPFRDSFDTYEDDAGHELGGP----ISPSLLQLKDLKYLDLSMNNFK   76 (176)
Q Consensus        12 ~~~~~l~~l~l~~~~~~~~~~----------~~~~~~~~l~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~~~~~   76 (176)
                      ...++++.+++.++.......          ......++|++|++++|.++..    +...+...++|+.|++++|.+.
T Consensus        56 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~  134 (344)
T d2ca6a1          56 ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG  134 (344)
T ss_dssp             TTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             HhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheeccccccc
Confidence            345666666666554322111          1123456788888888877654    3344456677888888777653

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.09  E-value=1.1e-09  Score=79.10  Aligned_cols=96  Identities=20%  Similarity=0.176  Sum_probs=75.2

Q ss_pred             cccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEE
Q 038633           15 SRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLN   94 (176)
Q Consensus        15 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~   94 (176)
                      .++++|+++++.+.+. |.   ..++|++|++++|.++ .+|..   +.+|+.|++++|.++.  ++. +  .+.|++|+
T Consensus        38 ~~l~~LdLs~~~L~~l-p~---~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~--l~~-l--p~~L~~L~  104 (353)
T d1jl5a_          38 RQAHELELNNLGLSSL-PE---LPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKA--LSD-L--PPLLEYLG  104 (353)
T ss_dssp             HTCSEEECTTSCCSCC-CS---CCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC--CCS-C--CTTCCEEE
T ss_pred             cCCCEEEeCCCCCCCC-CC---CCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccch--hhh-h--cccccccc
Confidence            5789999999988653 33   3467999999999997 56654   5689999999998883  442 1  25699999


Q ss_pred             eecccCCCCcchhccCCCCCCEEEccCCccC
Q 038633           95 LSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQ  125 (176)
Q Consensus        95 l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~  125 (176)
                      +++|.+. .+|. ++.++.|+.+++.++.+.
T Consensus       105 L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_         105 VSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             CCSSCCS-SCCC-CTTCTTCCEEECCSSCCS
T ss_pred             ccccccc-cccc-hhhhccceeecccccccc
Confidence            9999997 6674 578899999999988773

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.3e-10  Score=86.85  Aligned_cols=161  Identities=20%  Similarity=0.078  Sum_probs=91.5

Q ss_pred             ccccceeeccCccccCCCC----cCcccCCcceEeecCCCCccccchhhh-----cCCCCCcEEEccCccccCCcchhh-
Q 038633           14 LSRIFALSLLRCCSVGSAL----AQPFRDSFDTYEDDAGHELGGPISPSL-----LQLKDLKYLDLSMNNFKGFKVPEF-   83 (176)
Q Consensus        14 ~~~l~~l~l~~~~~~~~~~----~~~~~~~~l~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~~p~~-   83 (176)
                      ...++.+++++|.+.....    ........++.+++++|.+++.....+     .....|+.+++++|.+... .... 
T Consensus       254 ~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~-~~~~l  332 (460)
T d1z7xw1         254 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA-CCSHF  332 (460)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG-GHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhh-hhhhc
Confidence            4566777777766543221    112345566777777777754433322     1345677888877776643 3222 


Q ss_pred             ---hcCcCCccEEEeecccCCCC----cchhcc-CCCCCCEEEccCCccCccc--ccccccCCCCCccEEeccCCCCCCc
Q 038633           84 ---IGSLKELRYLNLSGSFFSGT----IPQSLG-NLTNLLYLDLNNFLDQSNQ--IGLGWLSGLPSLKYLNLGGADLSKD  153 (176)
Q Consensus        84 ---~~~l~~L~~L~l~~~~~~~~----~p~~~~-~l~~L~~L~l~~n~~~~~~--~~~~~~~~l~~L~~L~l~~n~l~~~  153 (176)
                         +...++|++|++++|++.+.    +++.+. ..+.|+.|++++|.++...  .....+..+++|++|++++|.+...
T Consensus       333 ~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~  412 (460)
T d1z7xw1         333 SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA  412 (460)
T ss_dssp             HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             ccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHH
Confidence               23445788888888877532    233332 3566888888888773221  1222345667788888888877654


Q ss_pred             hhhh-HHHhhc-cccCcEeeCcCC
Q 038633          154 AAYW-LESISM-LRSLVELRLPNC  175 (176)
Q Consensus       154 ~~~~-~~~l~~-~~~L~~L~l~~n  175 (176)
                      .... ...+.. -..|+.|++.+|
T Consensus       413 g~~~l~~~l~~~~~~L~~l~l~~~  436 (460)
T d1z7xw1         413 GILQLVESVRQPGCLLEQLVLYDI  436 (460)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTC
T ss_pred             HHHHHHHHHHhCCCccCEEECCCC
Confidence            3321 122322 236777777765

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.95  E-value=3.4e-09  Score=76.52  Aligned_cols=98  Identities=18%  Similarity=0.163  Sum_probs=77.4

Q ss_pred             cceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEc
Q 038633           40 FDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDL  119 (176)
Q Consensus        40 ~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l  119 (176)
                      ++++|+++++.++ .+|+.   .++|++|++++|.++  .+|+.+   .+|+.|++++|++. .++..   .+.|++|++
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~--~lp~~~---~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L  105 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT--ELPELP---QSLKSLLVDNNNLK-ALSDL---PPLLEYLGV  105 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS--SCCCCC---TTCCEEECCSSCCS-CCCSC---CTTCCEEEC
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc--ccccch---hhhhhhhhhhcccc-hhhhh---ccccccccc
Confidence            5789999999996 56753   578999999999999  577653   58999999999987 44432   246999999


Q ss_pred             cCCccCcccccccccCCCCCccEEeccCCCCCCch
Q 038633          120 NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDA  154 (176)
Q Consensus       120 ~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  154 (176)
                      ++|.+...+.    +..+++|++|+++++.+...+
T Consensus       106 ~~n~l~~lp~----~~~l~~L~~L~l~~~~~~~~~  136 (353)
T d1jl5a_         106 SNNQLEKLPE----LQNSSFLKIIDVDNNSLKKLP  136 (353)
T ss_dssp             CSSCCSSCCC----CTTCTTCCEEECCSSCCSCCC
T ss_pred             cccccccccc----hhhhccceeeccccccccccc
Confidence            9999854433    568899999999999876443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=5.6e-10  Score=83.34  Aligned_cols=115  Identities=19%  Similarity=0.117  Sum_probs=84.8

Q ss_pred             cceEeecCCCCccccc-hhhhcCCCCCcEEEccCccccCC---cchhhhcCcCCccEEEeecccCCCC----cchhcc-C
Q 038633           40 FDTYEDDAGHELGGPI-SPSLLQLKDLKYLDLSMNNFKGF---KVPEFIGSLKELRYLNLSGSFFSGT----IPQSLG-N  110 (176)
Q Consensus        40 ~l~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~---~~p~~~~~l~~L~~L~l~~~~~~~~----~p~~~~-~  110 (176)
                      +|+.||++++++++.. ...+..++++++|++++|.++..   .++..+..+++|++|++++|.+...    +...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            5899999999998643 44466789999999999988742   1345567889999999999988522    222222 2


Q ss_pred             CCCCCEEEccCCccCccc--ccccccCCCCCccEEeccCCCCCCch
Q 038633          111 LTNLLYLDLNNFLDQSNQ--IGLGWLSGLPSLKYLNLGGADLSKDA  154 (176)
Q Consensus       111 l~~L~~L~l~~n~~~~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~  154 (176)
                      ..+|+.|++++|.++...  .....+..+++|++|++++|.+.+..
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~  128 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAG  128 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhh
Confidence            357999999999884221  22345778899999999999987543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=1.5e-09  Score=70.77  Aligned_cols=64  Identities=27%  Similarity=0.117  Sum_probs=28.7

Q ss_pred             CcCCccEEEeecccCCCCc--chhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCC
Q 038633           86 SLKELRYLNLSGSFFSGTI--PQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLS  151 (176)
Q Consensus        86 ~l~~L~~L~l~~~~~~~~~--p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~  151 (176)
                      .+++|++|++++|+++...  +..+..+++|+.|++++|.++......  +....+|+.+++++|.+.
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~--~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELD--KIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHH--HHTTCCCSSCCCTTSTTS
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhh--hhhccccceeecCCCCcC
Confidence            4455555555555554221  222334555555555555553322211  112234555555555554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.57  E-value=5e-08  Score=63.68  Aligned_cols=111  Identities=14%  Similarity=0.063  Sum_probs=59.3

Q ss_pred             CCcceEeecCCC-Ccccc----chhhhcCCCCCcEEEccCccccCC---cchhhhcCcCCccEEEeecccCCCC----cc
Q 038633           38 DSFDTYEDDAGH-ELGGP----ISPSLLQLKDLKYLDLSMNNFKGF---KVPEFIGSLKELRYLNLSGSFFSGT----IP  105 (176)
Q Consensus        38 ~~~l~~L~l~~n-~l~~~----~~~~l~~l~~L~~L~l~~~~~~~~---~~p~~~~~l~~L~~L~l~~~~~~~~----~p  105 (176)
                      .+.|++|+++++ .++.+    +...+...+.|++|++++|.+...   .+...+...+.|++|++++|.+...    +.
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            355777777763 45433    333455566677777777766532   1223344456677777777766532    12


Q ss_pred             hhccCCCCCCEEEccCCccCcc-----cccccccCCCCCccEEeccCC
Q 038633          106 QSLGNLTNLLYLDLNNFLDQSN-----QIGLGWLSGLPSLKYLNLGGA  148 (176)
Q Consensus       106 ~~~~~l~~L~~L~l~~n~~~~~-----~~~~~~~~~l~~L~~L~l~~n  148 (176)
                      ..+...++|++|++.+|.....     ......+...++|+.|+++.+
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            2344556666666666654211     111223444556666666544

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=3.3e-08  Score=64.27  Aligned_cols=94  Identities=20%  Similarity=0.151  Sum_probs=67.2

Q ss_pred             cchhhhcCCCCCcEEEccCccccCCc-chhhhcCcCCccEEEeecccCCCCcch-hccCCCCCCEEEccCCccCcccc--
Q 038633           54 PISPSLLQLKDLKYLDLSMNNFKGFK-VPEFIGSLKELRYLNLSGSFFSGTIPQ-SLGNLTNLLYLDLNNFLDQSNQI--  129 (176)
Q Consensus        54 ~~~~~l~~l~~L~~L~l~~~~~~~~~-~p~~~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~n~~~~~~~--  129 (176)
                      ..+.....+++|++|++++|.++... ++..+..+++|+.|++++|.+. .+++ .......++.+++.+|++.....  
T Consensus        56 ~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~  134 (162)
T d1koha1          56 TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLSDTFRDQ  134 (162)
T ss_dssp             HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSSSSSSH
T ss_pred             hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcCcCcccc
Confidence            34455567999999999999998541 2455778899999999999998 4443 23345679999999999843221  


Q ss_pred             ---cccccCCCCCccEEeccCCCC
Q 038633          130 ---GLGWLSGLPSLKYLNLGGADL  150 (176)
Q Consensus       130 ---~~~~~~~l~~L~~L~l~~n~l  150 (176)
                         ....+..+++|+.||  |..+
T Consensus       135 ~~y~~~i~~~~P~L~~LD--g~~v  156 (162)
T d1koha1         135 STYISAIRERFPKLLRLD--GHEL  156 (162)
T ss_dssp             HHHHHHHHTTSTTCCEET--TEEC
T ss_pred             hhHHHHHHHHCCCCCEEC--cCCC
Confidence               123467889999885  4444

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.40  E-value=2.5e-07  Score=60.28  Aligned_cols=117  Identities=13%  Similarity=0.032  Sum_probs=72.5

Q ss_pred             hcCCCCCcEEEccCc-cccCCc---chhhhcCcCCccEEEeecccCCC----CcchhccCCCCCCEEEccCCccCcc--c
Q 038633           59 LLQLKDLKYLDLSMN-NFKGFK---VPEFIGSLKELRYLNLSGSFFSG----TIPQSLGNLTNLLYLDLNNFLDQSN--Q  128 (176)
Q Consensus        59 l~~l~~L~~L~l~~~-~~~~~~---~p~~~~~l~~L~~L~l~~~~~~~----~~p~~~~~l~~L~~L~l~~n~~~~~--~  128 (176)
                      ..+.+.|++|+++++ .+....   +-..+...++|++|++++|.+..    .+.+.+...+.|+.|++++|.+...  .
T Consensus        11 ~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~   90 (167)
T d1pgva_          11 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA   90 (167)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHH
Confidence            345678888888764 344321   22345556778888888887753    2233445567888888888877432  1


Q ss_pred             ccccccCCCCCccEEeccCCCCCCch----hhhHHHhhccccCcEeeCcCC
Q 038633          129 IGLGWLSGLPSLKYLNLGGADLSKDA----AYWLESISMLRSLVELRLPNC  175 (176)
Q Consensus       129 ~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~~~~L~~L~l~~n  175 (176)
                      ....++...++|++|++++|.+....    ..+...+...++|++|+++.+
T Consensus        91 ~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          91 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            22334667778888888887654332    223345566678888887654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.30  E-value=2.2e-07  Score=60.40  Aligned_cols=63  Identities=14%  Similarity=0.088  Sum_probs=28.6

Q ss_pred             CcceEeecCC-CCcccc----chhhhcCCCCCcEEEccCccccCCc---chhhhcCcCCccEEEeecccCC
Q 038633           39 SFDTYEDDAG-HELGGP----ISPSLLQLKDLKYLDLSMNNFKGFK---VPEFIGSLKELRYLNLSGSFFS  101 (176)
Q Consensus        39 ~~l~~L~l~~-n~l~~~----~~~~l~~l~~L~~L~l~~~~~~~~~---~p~~~~~l~~L~~L~l~~~~~~  101 (176)
                      +.|++|++++ +.++..    +...+...+.|++|++++|.+....   +...+....+++.+++++|.+.
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            4555555555 234322    2233334555555565555544320   1122333455555555555543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.89  E-value=6.9e-06  Score=53.01  Aligned_cols=123  Identities=12%  Similarity=0.062  Sum_probs=75.4

Q ss_pred             ccchhhhcCCCCCcEEEccC-ccccCCc---chhhhcCcCCccEEEeecccCCCCc----chhccCCCCCCEEEccCCcc
Q 038633           53 GPISPSLLQLKDLKYLDLSM-NNFKGFK---VPEFIGSLKELRYLNLSGSFFSGTI----PQSLGNLTNLLYLDLNNFLD  124 (176)
Q Consensus        53 ~~~~~~l~~l~~L~~L~l~~-~~~~~~~---~p~~~~~l~~L~~L~l~~~~~~~~~----p~~~~~l~~L~~L~l~~n~~  124 (176)
                      ..+.....+.+.|++|++++ +.++...   +-..+...++|++|++++|.+....    ...+...++++.+++.+|.+
T Consensus         7 ~~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~   86 (166)
T d1io0a_           7 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI   86 (166)
T ss_dssp             HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             HHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccc
Confidence            34445556678888888887 4454321   2234556788888888888876322    23345567888888888877


Q ss_pred             Ccc--cccccccCCCCCccEEec--cCCCCCCchh-hhHHHhhccccCcEeeCcCC
Q 038633          125 QSN--QIGLGWLSGLPSLKYLNL--GGADLSKDAA-YWLESISMLRSLVELRLPNC  175 (176)
Q Consensus       125 ~~~--~~~~~~~~~l~~L~~L~l--~~n~l~~~~~-~~~~~l~~~~~L~~L~l~~n  175 (176)
                      ...  ......+...++|+.++|  ++|.+..... .....+...+.|++|++..+
T Consensus        87 ~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          87 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             cchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            322  122234566777876555  4566644332 22335667788888888765