Citrus Sinensis ID: 038658

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-
Protein Sequence
DWEGVLSCNIWDLPEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWSAVGFLDHRKSENPCEDLGRKFFQELRARSFFQQSSNNKSLFVMHDLINDLAHWAAGEIYFTMDYTSEVNKQQSFSKNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPEHLPALEMLVIGGCEELLVSITSLPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSLLSLSSLREIEIYNCSSFVSFPEVALPSKVRSISIHRCDALKSLPEAWMCDANLSLEILTISRCHSLTYIAEVQLPPSLKNVVIRNCDNVRTLTVEEGIQSSSSRRYTSSLLEHLHIESCPSLTCIFSKNELLATLESLEVGNLPPSLKSLEVLSCSKLESIAERLDNNTSLETITIISCKNLKNLPT
Secondary Structure (PSIPRED)
cHHHHHcccccccccccccccHHHHccccccccccccccccccccccccEEcHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccccccccccccEEEcHHHHHHHHHHHHccEEEEEcccccccccccccccEEEEEEEcccccccccccccccccccEEccccccccccccHHHHHHHHHcccccEEEEEccccccccccccccccccccEEEccccccccccccHHccccccEEEccccccccccHHHHcccccccEEEEccccccccccccccccccccccccEEEcccccccHHHHccccccccEEEEccccccccccccccccEEEEEEcccccccHHHHcHHHHHHcccccccccccEEEEEcccccccccccccccccEEEEEEEcccccccccccccccccccEEEccccccEEEcccccccccccccccccEEEccccccccccccccccccccccccccEEEEccccccccccccccccccEEEEEccccccccccccccccEEEEEcccccEEEccccccccccEEEEcccccccccccccccccccccEEEEEcccccccccccccccccccccccEEEEEcccccccccHHHHHHHHHHHcccccccEEEEEcccccccccccccccccccEEEEEcccccEEcccccccccccEEEEEEccccccccccccccccccccEEEEEccccccccccccccccccEEEEEccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHcHHcccccccccccHHHHEcHccccHHHHHHHHEHHcccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccccccccEEEHHHHHHHHHHHHHccEEEEEcccccccccccccHcEEEEEEEccccccccccccHHHHHHHcEEccccccccccccHHHHHHHHHHHcccEEEEEEccccccccccccccccccEEEEEcccccccccccccccccHEEEEEcccccHHccccHHcccccccEEEEcccccHccccccccccccccEEEEEEccccccccHHHHHcHHHccccccHHHHccccccccccccEEEEcccccccccccccccHHHHHHHHccccccccEEEEEcccccccccccccccccccEEEEEcccccccccccccccccccEEEEccccccEEccHHHcccccccccccccEEEEcccHHHHHcccccccccccccccccEEEEcccccHccccccccccHHEEEccccccccccccccccccEEEEEcccccEccccccccccccEEEEccccccccccccccccccccEEEEEccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccEEEEcccccHHcccccccccccccEEEEcccccccccccccccccccEEEEcccccHccccHHccccccccccEEEEcccccccccccccccccccEEEEcccHcHHcccccccccccHccccccccccEEEEccccccccccHHHcccccHcccccccccccccEEEEcccccHHHccccccccccccEEEEccccccccccc
Coil and Loop (DISEMBL)
dwegvlscniwdlpeercdiiPALRVSYYYLSAPLKQCFAYcslfpkdyefEEEEIILLWSAVgfldhrksenpcedLGRKFFQELRARsffqqssnnksLFVMHDLINDLAHWAAGEIYFTMDYTSEVNKQQSFSKNLRHLSCIcgkydgvkrfeDLYNIQHLRTFLpvclsnssqgflahsilPKLFKLQRLRVFSLCGYWiselpdsigdlRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLiklhhlnnsntdsleemplgigkLTCLQTLCnfvvgkdsgsRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWtnstdgsslreaETQKGVLdmlkphknlEQFFisgyggtkfpiwlgdssfsnlvtlkfedcgmcttlpsvgqlpslkHLAVRRMSRVRrlgsefygndtpipfpcletlrfenllewedwiphgstqgvegfpklrelevigcsklkgtfpehlpALEMLVIGGCEELLVSItslpalskleiggckKVVWRsetdhlgsqnsvvCRDTLNQVllagplkprlpkleeleisniknETYIWKRHngflqdisslkrltigwcptlqSLVAEEEKDQQQLCELSCRLEYLLLNDCKglvklpqsllslsslreieiyncssfvsfpevalpskvrsiSIHRCDALKSLPEAWMCDANLSLEILTISRCHsltyiaevqlppslknvvirncdnVRTLTVEEgiqssssrRYTSSLLEhlhiescpsltcifskNELLATLEslevgnlppslkslEVLSCSKLESIAErldnntsleTITIIScknlknlpt
Flexible Loop (DISEMBL)
DWEGVLSCniwdlpeercDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWSAVGFLDHRKSENPCEDLGRKFFQELRARSFFQQSSNNKSLFVMHDLINDLAHWAAGEIYFTMDYTSEVNKQQSFSKNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVvgkdsgsrlrELKLLThlrgtltisklenaqldgkknLKVLMLRWtnstdgsslreAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTlpsvgqlpslkhlAVRRMSRVRrlgsefygndtpipfpCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPEHLPALEMLVIGGCEELLVSITSLPALSKLEIGGCKKVVWRSETdhlgsqnsvvcRDTLNQVLLagplkprlpklEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSLLSLSSLREIEIYNCSSFVSFPEVALPSKVRSISIHRCDALKSLPEAWMCDANLSLEILTISRCHSLTYIAEvqlppslknvvIRNCDNVRTLtveegiqssssrRYTSSLLEHLHIESCPSLTCIFSKNELLATLESLEVGNLPPSLKSLEVLSCSKLESIaerldnntsletitiiscknlknlpt
Low Complexity Region (SEG)
DWEGVLSCNIWDLPEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWSAVGFLDHRKSENPCEDLGRKFFQELRARSFFQQSSNNKSLFVMHDLINDLAHWAAGEIYFTMDYTSEVNKQQSFSKNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPEHLPALEMLVIGGCEELLVSITSLPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGplkprlpkleeleISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQsllslsslREIEIYNCSSFVSFPEVALPSKVRSISIHRCDALKSLPEAWMCDANLSLEILTISRCHSLTYIAEVQLPPSLKNVVIRNCDNVRTLTVEEGIQssssrrytssLLEHLHIESCPSLTCIFSKNELLATLESLEVGNLPPSLKSLEVLSCSKLESIAERLDNNTSLETITIISCKNLKNLPT
Disordered region (IsUnstruct)
**EGVLSCNIWDLPEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWSAVGFLDHRKSENPCEDLGRKFFQELRARSFFQQSSNNKSLFVMHDLINDLAHWAAGEIYFTMDYTSEVNKQQSFSKNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTN***************VLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPEHLPALEMLVIGGCEELLVSITSLPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSLLSLSSLREIEIYNCSSFVSFPEVALPSKVRSISIHRCDALKSLPEAWMCDANLSLEILTISRCHSLTYIAEVQLPPSLKNVVIRNCDNVRTLTVEEGI*******YTSSLLEHLHIESCPSLTCIFSKNELLATLESLEVGNLPPSLKSLEVLSCSKLESIAERLDNNTSLETITIISCKN******
Disordered Region (DISOPRED)
DWEGVLSCNIWDLPEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWSAVGFLDHRKSENPCEDLGRKFFQELRARSFFQQSSNNKSLFVMHDLINDLAHWAAGEIYFTMDYTSEV*K*QSFSKNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDG******ETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPEHLPALEMLVIGGCEELLVSITSLPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSLLSLSSLREIEIYNCSSFVSFPEVALPSKVRSISIHRCDALKSLPEAWMCDANLSLEILTISRCHSLTYIAEVQLPPSLKNVVIRNCDNVRTLTVE************SSLLEHLHIESCPSLTCIFSKNELLATLESLEVGNLPPSLKSLEVLSCSKLESIAERLDNNTSLETITIISCKNLKNLPT
Disordered Region (DISEMBL)
DWEGVLSCNIWDLPEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWSAVGFLDHRKSENPCEDLGRKFFQELRARSFFQQSSNNKSLFVMHDLINDLAHWAAGEIYFTMDYTSEVNKQQSFSKNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPEHLPALEMLVIGGCEELLVSITSLPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVA********LCELSCRLEYLLLNDCKGLVKLPQSLLSLSSLREIEIYNCSSFVSFPEVALPSKVRSISIHRCDALKSLPEAWMCDANLSLEILTISRCHSLTYIAEVQLPPSLKNVVIRNCDNVRTLTVEEGIQSSSSRRYTSSLLEHLHIESCPSLTCIFSKNELLATLESLEVGNLPPSLKSLEVLSCSKLESIAERLDNNTSLETITIISCKNLKNLPT
Disordered Region (DISPRO)
DWEGVLSCNIWDLPEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWSAVGFLDHRKSENPCEDLGRKFFQELRARSFFQQSSNNKSLFVMHDLINDLAHWAAGEIYFTMDYTSEVNKQQSFSKNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPEHLPALEMLVIGGCEELLVSITSLPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSLLSLSSLREIEIYNCSSFVSFPEVALPSKVRSISIHRCDALKSLPEAWMCDANLSLEILTISRCHSLTYIAEVQLPPSLKNVVIRNCDNVRTLTVEEGIQSSSSRRYTSSLLEHLHIESCPSLTCIFSKNELLATLESLEVGNLPPSLKSLEVLSCSKLESIAERLDNNTSLETITIISCKNLK****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
DWEGVLSCNIWDLPEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWSAVGFLDHRKSENPCEDLGRKFFQELRARSFFQQSSNNKSLFVMHDLINDLAHWAAGEIYFTMDYTSEVNKQQSFSKNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPEHLPALEMLVIGGCEELLVSITSLPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSLLSLSSLREIEIYNCSSFVSFPEVALPSKVRSISIHRCDALKSLPEAWMCDANLSLEILTISRCHSLTYIAEVQLPPSLKNVVIRNCDNVRTLTVEEGIQSSSSRRYTSSLLEHLHIESCPSLTCIFSKNELLATLESLEVGNLPPSLKSLEVLSCSKLESIAERLDNNTSLETITIISCKNLKNLPT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	831	2.2.26 [Sep-21-2011]
Q9LRR5	1424	Putative disease resistan	yes	no	0.943	0.550	0.320	1e-103
Q9LRR4	1054	Putative disease resistan	no	no	0.593	0.467	0.396	1e-100
Q7XBQ9	970	Disease resistance protei	N/A	no	0.691	0.592	0.327	3e-65
Q7XA39	988	Putative disease resistan	N/A	no	0.702	0.591	0.319	3e-65
Q7XA42	979	Putative disease resistan	N/A	no	0.660	0.560	0.333	4e-64
Q7XA40	992	Putative disease resistan	N/A	no	0.720	0.603	0.312	2e-63
Q9LVT4	843	Probable disease resistan	no	no	0.274	0.270	0.295	7e-19
Q38834	852	Disease resistance RPP13-	no	no	0.415	0.404	0.273	3e-18
O81825	919	Probable disease resistan	no	no	0.312	0.282	0.283	4e-17
P0DI18	1049	Probable disease resistan	no	no	0.519	0.411	0.269	2e-16

>sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1

 Score =  375 bits (963), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 290/905 (32%), Positives = 428/905 (47%), Gaps = 121/905 (13%)

Query: 20   IIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWSAVGFLDHRKSENPCEDLG 79
            I+P L++SY  L   LK+CFA CS+FPK + F+ EE++LLW A+  L   +S    ED+G
Sbjct: 403  ILPVLKLSYDSLPPQLKRCFALCSIFPKGHVFDREELVLLWMAIDLLYQPRSSRRLEDIG 462

Query: 80   RKFFQELRARSFFQQSSNNKSLFVMHDLINDLAHWAAGEIYFTMDYTSEVNKQQSFSKNL 139
              +  +L A+SFFQ+     + FVMHDL+NDLA   +G+  F +    E +         
Sbjct: 463  NDYLGDLVAQSFFQRLDITMTSFVMHDLMNDLAKAVSGDFCFRL----EDDNIPEIPSTT 518

Query: 140  RHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGF-LAHSIL-PKLFKLQRLRVF 197
            RH S    + D    F  +   + LRT LP     S +   L   +L P L  L  LR+ 
Sbjct: 519  RHFSFSRSQCDASVAFRSICGAEFLRTILPFNSPTSLESLQLTEKVLNPLLNALSGLRIL 578

Query: 198  SLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAG 257
            SL  Y I+ LP S+  L+ LRYL+LS T+I+ LPE V  L NL TL L  CR L  L   
Sbjct: 579  SLSHYQITNLPKSLKGLKLLRYLDLSSTKIKELPEFVCTLCNLQTLLLSNCRDLTSLPKS 638

Query: 258  MGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTL 317
            +  LI L  L+   T  L EMP GI KL  LQ L NFV+G+ SG+ L ELK L+HLRGTL
Sbjct: 639  IAELINLRLLDLVGT-PLVEMPPGIKKLRSLQKLSNFVIGRLSGAGLHELKELSHLRGTL 697

Query: 318  TISKLEN---------AQLDGKKNLKVLMLRWT----NSTDGSSLREAETQKGVLDMLKP 364
             IS+L+N         A L  K  L  L+L+WT        GS    A  QK VL ML+P
Sbjct: 698  RISELQNVAFASEAKDAGLKRKPFLDGLILKWTVKGSGFVPGSFNALACDQKEVLRMLEP 757

Query: 365  HKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHLAVRRM 424
            H +L+ F I  Y G  FP WLGDSSF  + ++    C +C +LP VGQLPSLK+L++ + 
Sbjct: 758  HPHLKTFCIESYQGGAFPKWLGDSSFFGITSVTLSSCNLCISLPPVGQLPSLKYLSIEKF 817

Query: 425  SRVRRLGSEFY---GNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVI 481
            + ++++G +F+    N   +PF  L+ L+F  +  W++WI      G+  FP L++L + 
Sbjct: 818  NILQKVGLDFFFGENNSRGVPFQSLQILKFYGMPRWDEWICPELEDGI--FPCLQKLIIQ 875

Query: 482  GCSKLKGTFPEHLPALEMLVIGGCEELLV----------------SITSLPALSKLEIG- 524
             C  L+  FPE LP+   + I  C    V                S  S+P++S+ E+  
Sbjct: 876  RCPSLRKKFPEGLPSSTEVTISDCPLRAVSGGENSFRRSLTNIPESPASIPSMSRRELSS 935

Query: 525  --GCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELE---------ISN 573
              G  K    +      + +S    D       +    P+  + E+ +            
Sbjct: 936  PTGNPKSDASTSAQPGFASSSQSNDDNEVTSTSSLSSLPKDRQTEDFDQYETQLGSLPQQ 995

Query: 574  IKNETYIWKRHNGFLQDI---------------------------SSLKRLTIGWCPTLQ 606
             +    I  R++G++ DI                           SS +    G   ++ 
Sbjct: 996  FEEPAVISARYSGYISDIPSTLSPYMSRTSLVPDPKNEGSILPGSSSYQYHQYGIKSSVP 1055

Query: 607  SLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSLLSL------------------- 647
            S  + E     Q  +    +EYL + D   L++LPQ+L SL                   
Sbjct: 1056 SPRSSEAIKPSQYDDDETDMEYLKVTDISHLMELPQNLQSLHIDSCDGLTSLPENLTESY 1115

Query: 648  SSLREIEIYNCSSFVSFPEVALPSKVRSISIHRCDALKSLPEAWMCDANLSLEILTI-SR 706
             +L E+ I  C S  SFP    P+ ++++ I  C  L          +   LE L I S 
Sbjct: 1116 PNLHELLIIACHSLESFPGSHPPTTLKTLYIRDCKKLNFTESLQPTRSYSQLEYLFIGSS 1175

Query: 707  CHSLTYIAEVQLPPSLKNVVIRNCDNVRTLTVEEGIQSSSSRRYTSSLLEHLHIESCPSL 766
            C +L     + L P L+++ IR+C++ +T ++  G+            LE L I  CP+ 
Sbjct: 1176 CSNLVNFP-LSLFPKLRSLSIRDCESFKTFSIHAGLGDDRIA------LESLEIRDCPN- 1227

Query: 767  TCIFSKNELLATLESLEVGNLP-PSLKSLEVLSCSKLESIAERLDNNTSLETITIISCKN 825
                        LE+   G LP P L S+ + +C KL+++ E+L   TSL ++ II C  
Sbjct: 1228 ------------LETFPQGGLPTPKLSSMLLSNCKKLQALPEKLFGLTSLLSLFIIKCPE 1275

Query: 826  LKNLP 830
            ++ +P
Sbjct: 1276 IETIP 1280

Potential disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1

 Score =  365 bits (938), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 210/530 (39%), Positives = 314/530 (59%), Gaps = 37/530 (6%)

Query: 1   DWEGVLSCNIWDLPEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLW 60
           +WE VLS  IWDLP ++ +++P LRVSYYYL A LK+CFAYCS+FPK + FE+++++LLW
Sbjct: 392 EWERVLSSRIWDLPADKSNLLPVLRVSYYYLPAHLKRCFAYCSIFPKGHAFEKDKVVLLW 451

Query: 61  SAVGFLDHRKSENPCEDLGRKFFQELRARSFFQQSSNNKSLFVMHDLINDLAHWAAGEIY 120
            A GFL   +S    E+LG ++F EL +RS  Q++   K+ ++MHD IN+LA +A+GE  
Sbjct: 452 MAEGFLQQTRSSKNLEELGNEYFSELESRSLLQKT---KTRYIMHDFINELAQFASGE-- 506

Query: 121 FTMDYTSEVNKQQSFSKNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQG-- 178
           F+  +      Q   S+  R+LS +   Y     FE L  ++ LRTFLP+ L+NSS+   
Sbjct: 507 FSSKFEDGCKLQ--VSERTRYLSYLRDNYAEPMEFEALREVKFLRTFLPLSLTNSSRSCC 564

Query: 179 ---FLAHSILPKLFKLQRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTLPESV 234
               ++  +LP    L RLRV SL  Y I+ L PD   ++ + R+L+LS T++  LP+S+
Sbjct: 565 LDQMVSEKLLP---TLTRLRVLSLSHYKIARLPPDFFKNISHARFLDLSRTELEKLPKSL 621

Query: 235 NKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNF 294
             +YNL TL L  C  L++L   + NLI L +L+   T  L +MP   G+L  LQTL  F
Sbjct: 622 CYMYNLQTLLLSYCSSLKELPTDISNLINLRYLDLIGT-KLRQMPRRFGRLKSLQTLTTF 680

Query: 295 VVGKDSGSRLRELKLLTHLRGTLTISKLEN---------AQLDGKKNLKVLMLRW----T 341
            V    GSR+ EL  L  L G L I +L+          A L+ KK+L+ +   W    +
Sbjct: 681 FVSASDGSRISELGGLHDLHGKLKIVELQRVVDVADAAEANLNSKKHLREIDFVWRTGSS 740

Query: 342 NSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDC 401
           +S + ++    + +  V + L+PH+++E+  I  Y G +FP WL D SFS +V ++  +C
Sbjct: 741 SSENNTNPHRTQNEAEVFEKLRPHRHIEKLAIERYKGRRFPDWLSDPSFSRIVCIRLREC 800

Query: 402 GMCTTLPSVGQLPSLKHLAVRRMSRVRRLGSEFYGN------DTPIPFPCLETLRFENLL 455
             CT+LPS+GQLP LK L +  M  ++ +G +FY +          PF  LETLRF+NL 
Sbjct: 801 QYCTSLPSLGQLPCLKELHISGMVGLQSIGRKFYFSDQQLRDQDQQPFRSLETLRFDNLP 860

Query: 456 EWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPEHLPALEMLVIGGC 505
           +W++W+    T+G + FP L++L ++ C +L GT P  LP+L  L I  C
Sbjct: 861 DWQEWLDVRVTRG-DLFPSLKKLFILRCPELTGTLPTFLPSLISLHIYKC 909

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1

 Score =  250 bits (639), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 227/693 (32%), Positives = 315/693 (45%), Gaps = 118/693 (17%)

Query: 2   WEGVLSCNIWDLPEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWS 61
           WE V    IW+LP++   I+PALR+SY+ L   LKQCFAYC++FPKD + E+E++I LW 
Sbjct: 370 WEHVRDSPIWNLPQDESSILPALRLSYHQLPLDLKQCFAYCAVFPKDAKMEKEKLISLWM 429

Query: 62  AVGFLDHRKSENPCEDLGRKFFQELRARSFFQ--QSSNNKSLFVMHDLINDLAHWAAGEI 119
           A GFL   K     ED+G + ++EL  RSFFQ  +  + K+ F MHDLI+DLA       
Sbjct: 430 AHGFL-LSKGNMELEDVGDEVWKELYLRSFFQEIEVKDGKTYFKMHDLIHDLA------- 481

Query: 120 YFTMDYTSEVNKQQSFSKNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGF 179
                 TS  +   S S N+R ++                  +H  T +   +S      
Sbjct: 482 ------TSLFSANTS-SSNIREIN------------------KHSYTHM---MSIGFAEV 513

Query: 180 LAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYN 239
           +    LP L K   LRV +L     ++LP SIGDL +LRYLNL G+ +R+LP+ + KL N
Sbjct: 514 VFFYTLPPLEKFISLRVLNLGDSTFNKLPSSIGDLVHLRYLNLYGSGMRSLPKQLCKLQN 573

Query: 240 LHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKD 299
           L TL L+ C  L  L      L  L +L    + SL  MP  IG LTCL+TL  FVVG+ 
Sbjct: 574 LQTLDLQYCTKLCCLPKETSKLGSLRNLLLDGSQSLTCMPPRIGSLTCLKTLGQFVVGRK 633

Query: 300 SGSRLRELKLLTHLRGTLTISKLE---------NAQLDGKKNLKVLMLRWTNSTDGSSLR 350
            G +L EL  L +L G++ IS LE          A L  K NL  L + W N   G  + 
Sbjct: 634 KGYQLGELGNL-NLYGSIKISHLERVKNDKDAKEANLSAKGNLHSLSMSWNNF--GPHIY 690

Query: 351 EAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSV 410
           E+E  K VL+ LKPH NL    I G+ G   P W+  S   N+V++   +   C+ LP  
Sbjct: 691 ESEEVK-VLEALKPHSNLTSLKIYGFRGIHLPEWMNHSVLKNIVSILISNFRNCSCLPPF 749

Query: 411 GQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVE 470
           G LP L+ L             E +     + +           +E  D   H       
Sbjct: 750 GDLPCLESL-------------ELHWGSADVEY-----------VEEVDIDVHSGFPTRI 785

Query: 471 GFPKLRELEVIGCSKLKGTFP----EHLPALEMLVIGGCEELLVSITSLPALSKLEIGGC 526
            FP LR+L++     LKG       E  P LE ++I  C  L +S ++L AL+ L I   
Sbjct: 786 RFPSLRKLDIWDFGSLKGLLKKEGEEQFPVLEEMIIHECPFLTLS-SNLRALTSLRI--- 841

Query: 527 KKVVWRSETDHLGSQNSVVCRDTLNQVLLAGP--LKPRLPKLEELEISNIKNETYIWKRH 584
                                   N+V  + P  +   L  L+ L IS   N     K  
Sbjct: 842 ----------------------CYNKVATSFPEEMFKNLANLKYLTISRCNN----LKEL 875

Query: 585 NGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSL 644
              L  +++LK L I  C  L+SL  E  +    L E       L +  C  L  LP+ L
Sbjct: 876 PTSLASLNALKSLKIQLCCALESLPEEGLEGLSSLTE-------LFVEHCNMLKCLPEGL 928

Query: 645 LSLSSLREIEIYNCSSFVSFPEVALPSKVRSIS 677
             L++L  ++I  C   +   E  +      IS
Sbjct: 929 QHLTTLTSLKIRGCPQLIKRCEKGIGEDWHKIS 961

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1

 Score =  250 bits (639), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 228/714 (31%), Positives = 319/714 (44%), Gaps = 130/714 (18%)

Query: 1   DWEGVLSCNIWDLPEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLW 60
           +WE V    IW LP++   I+PALR+SY++L   L+QCFAYC++FPKD +  +E +I LW
Sbjct: 370 EWEHVRDNEIWSLPQDESSILPALRLSYHHLPLDLRQCFAYCAVFPKDTKMIKENLITLW 429

Query: 61  SAVGFLDHRKSENPCEDLGRKFFQELRARSFFQ--QSSNNKSLFVMHDLINDLAHWAAGE 118
            A GFL   K     ED+G + + EL  RSFFQ  ++ +  + F +HDLI+DLA      
Sbjct: 430 MAHGFL-LSKGNLELEDVGNEVWNELYLRSFFQEIEAKSGNTYFKIHDLIHDLA------ 482

Query: 119 IYFTMDYTSEVNKQQSFSKNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQG 178
                              +L   S  CG    +    ++ + +H            S G
Sbjct: 483 ------------------TSLFSASASCGNIREI----NVKDYKH----------TVSIG 510

Query: 179 FLA--HSILPKLF-KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVN 235
           F A   S  P L  K   LRV +L    + +LP SIGDL +LRYL+LS    R+LPE + 
Sbjct: 511 FAAVVSSYSPSLLKKFVSLRVLNLSYSKLEQLPSSIGDLLHLRYLDLSCNNFRSLPERLC 570

Query: 236 KLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFV 295
           KL NL TL +  C  L  L      L  L HL       L   P  IG LTCL+TL  F+
Sbjct: 571 KLQNLQTLDVHNCYSLNCLPKQTSKLSSLRHLVVDGC-PLTSTPPRIGLLTCLKTLGFFI 629

Query: 296 VGKDSGSRLRELKLLTHLRGTLTISKLE--------NAQLDGKKNLKVLMLRWTNSTDGS 347
           VG   G +L ELK L +L G+++I+ LE         A L  K NL+ L + W N  DG 
Sbjct: 630 VGSKKGYQLGELKNL-NLCGSISITHLERVKNDTDAEANLSAKANLQSLSMSWDN--DGP 686

Query: 348 SLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTL 407
           +  E++  K VL+ LKPH NL+   I  +GG +FP W+  S    +++++ + C  C  L
Sbjct: 687 NRYESKEVK-VLEALKPHPNLKYLEIIAFGGFRFPSWINHSVLEKVISVRIKSCKNCLCL 745

Query: 408 PSVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFEN------LLEWEDWI 461
           P  G+L                              PCLE L  +N       +E +D  
Sbjct: 746 PPFGEL------------------------------PCLENLELQNGSAEVEYVEEDDVH 775

Query: 462 PHGSTQGVEGFPKLRELEVIGCSKLKGTFPEH----LPALEMLVIGGCEELLVSITSLPA 517
              ST+    FP L++L +     LKG   E      P LE + I  C   L    +L +
Sbjct: 776 SRFSTR--RSFPSLKKLRIWFFRSLKGLMKEEGEEKFPMLEEMAILYCP--LFVFPTLSS 831

Query: 518 LSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNE 577
           + KLE+ G       S   +L +  S+          L   +   L  LE L   + KN 
Sbjct: 832 VKKLEVHGNTNTRGLSSISNLSTLTSLRIGANYRATSLPEEMFTSLTNLEFLSFFDFKN- 890

Query: 578 TYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGL 637
               K     L  +++LKRL I  C +L+S         +Q  E    L  L +  CK L
Sbjct: 891 ---LKDLPTSLTSLNALKRLQIESCDSLESF-------PEQGLEGLTSLTQLFVKYCKML 940

Query: 638 VKLPQSLLSLSSLREIEIYNCSSFVSFPEVALPSKVRSISIHRCDALKSLPEAW 691
             LP+ L  L++L  + +  C      PEV            RCD  K + E W
Sbjct: 941 KCLPEGLQHLTALTNLGVSGC------PEVE----------KRCD--KEIGEDW 976

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2

 Score =  246 bits (629), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 222/665 (33%), Positives = 311/665 (46%), Gaps = 116/665 (17%)

Query: 1   DWEGVLSCNIWDLPEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLW 60
           +WE V    IW+LP++   I+PALR+SY++L   L+QCF YC++FPKD +  +E +I  W
Sbjct: 368 EWEHVRDSPIWNLPQDESSILPALRLSYHHLPLDLRQCFVYCAVFPKDTKMAKENLIAFW 427

Query: 61  SAVGFLDHRKSENPCEDLGRKFFQELRARSFFQ--QSSNNKSLFVMHDLINDLAHWAAGE 118
            A GFL   K     ED+G + + EL  RSFFQ  +  + K+ F MHDLI+DLA      
Sbjct: 428 MAHGFL-LSKGNLELEDVGNEVWNELYLRSFFQEIEVESGKTYFKMHDLIHDLA------ 480

Query: 119 IYFTMDYTSEVNKQQSFSKNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQG 178
                  TS  +   S S N+R    I   YDG                        S G
Sbjct: 481 -------TSLFSANTS-SSNIRE---INANYDGYMM---------------------SIG 508

Query: 179 F--LAHSILPKLF-KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGT-QIRTLPESV 234
           F  +  S  P L  K   LRV +L    +++LP SIGDL +LRYL+LSG  +IR LP+ +
Sbjct: 509 FAEVVSSYSPSLLQKFVSLRVLNLRNSNLNQLPSSIGDLVHLRYLDLSGNFRIRNLPKRL 568

Query: 235 NKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTD--SLEEMPLGIGKLTCLQTLC 292
            KL NL TL L  C  L  L        KL  L N   D  SL   P  IG LTCL++L 
Sbjct: 569 CKLQNLQTLDLHYCDSLSCLPKQTS---KLGSLRNLLLDGCSLTSTPPRIGLLTCLKSLS 625

Query: 293 NFVVGKDSGSRLRELKLLTHLRGTLTISKLE---------NAQLDGKKNLKVLMLRWTNS 343
            FV+GK  G +L ELK L +L G+++I+KL+          A L  K NL  L L W   
Sbjct: 626 CFVIGKRKGHQLGELKNL-NLYGSISITKLDRVKKDTDAKEANLSAKANLHSLCLSW--D 682

Query: 344 TDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGM 403
            DG    ++E    VL+ LKPH NL+   I+G+GG + P W+  S   N+V+++   C  
Sbjct: 683 LDGKHRYDSE----VLEALKPHSNLKYLEINGFGGIRLPDWMNQSVLKNVVSIRIRGCEN 738

Query: 404 CTTLPSVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPH 463
           C+ LP  G+LP L+ L             E +     + +              ED +  
Sbjct: 739 CSCLPPFGELPCLESL-------------ELHTGSADVEYV-------------EDNVHP 772

Query: 464 GSTQGVEGFPKLRELEVIGCSKLKGTFP----EHLPALEMLVIGGCEELLVSITSLPALS 519
           G       FP LR+L +   S LKG       +  P LE +    C   +  I +L ++ 
Sbjct: 773 GR------FPSLRKLVIWDFSNLKGLLKMEGEKQFPVLEEMTFYWCP--MFVIPTLSSVK 824

Query: 520 KLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETY 579
            L++      V RS   +L +  S+   D +    L   +   L  L+ L+IS  +N   
Sbjct: 825 TLKVIVTDATVLRS-ISNLRALTSLDISDNVEATSLPEEMFKSLANLKYLKISFFRN--- 880

Query: 580 IWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVK 639
             K     L  +++LK L   +C  L+SL  E  K    L ELS       +++C  L  
Sbjct: 881 -LKELPTSLASLNALKSLKFEFCDALESLPEEGVKGLTSLTELS-------VSNCMMLKC 932

Query: 640 LPQSL 644
           LP+ L
Sbjct: 933 LPEGL 937

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2

 Score =  244 bits (624), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 217/694 (31%), Positives = 321/694 (46%), Gaps = 95/694 (13%)

Query: 1   DWEGVLSCNIWDLPEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLW 60
           +WE V    IW+LP++   ++PALR+SY++L   L+QCFAYC++FPKD + E+E +I LW
Sbjct: 368 EWEHVRDSEIWNLPQDENSVLPALRLSYHHLPLDLRQCFAYCAVFPKDTKIEKEYLIALW 427

Query: 61  SAVGFLDHRKSENPCEDLGRKFFQELRARSFFQ--QSSNNKSLFVMHDLINDLAHWAAGE 118
            A  FL   K     ED+G + + EL  RSFFQ  +  + K+ F MHDLI+DL       
Sbjct: 428 MAHSFL-LSKGNMELEDVGNEVWNELYLRSFFQEIEVKSGKTYFKMHDLIHDL------- 479

Query: 119 IYFTMDYTSEVNKQQSFSKNLRHLSCICGKYDGVKRFED-LYNIQHLRTFLPVCLSNSSQ 177
                   + +    + S+++R ++        VK  ED ++ + + +  + +  S    
Sbjct: 480 -------ATSMFSASASSRSIRQIN--------VKDDEDMMFIVTNYKDMMSIGFSE--- 521

Query: 178 GFLAHSILPKLFK-LQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNK 236
             +  S  P LFK    LRV +L      +LP S+GDL +LRYL+LSG +I +LP+ + K
Sbjct: 522 --VVSSYSPSLFKRFVSLRVLNLSNSEFEQLPSSVGDLVHLRYLDLSGNKICSLPKRLCK 579

Query: 237 LYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVV 296
           L NL TL L  C+ L  L      L  L +L   +   L  MP  IG LTCL+TL  FVV
Sbjct: 580 LQNLQTLDLYNCQSLSCLPKQTSKLCSLRNLVLDHC-PLTSMPPRIGLLTCLKTLGYFVV 638

Query: 297 GKDSGSRLRELKLLTHLRGTLTISKLE---------NAQLDGKKNLKVLMLRWTNSTDGS 347
           G+  G +L EL+ L +LRG ++I+ LE          A L  K NL  L + W    D  
Sbjct: 639 GERKGYQLGELRNL-NLRGAISITHLERVKNDMEAKEANLSAKANLHSLSMSW----DRP 693

Query: 348 SLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTL 407
           +  E+E  K VL+ LKPH NL+   I  + G   P W+  S   N+V++    C  C+ L
Sbjct: 694 NRYESEEVK-VLEALKPHPNLKYLEIIDFCGFCLPDWMNHSVLKNVVSILISGCENCSCL 752

Query: 408 PSVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQ 467
           P  G+L                              PCLE+L  ++     +++      
Sbjct: 753 PPFGEL------------------------------PCLESLELQDGSVEVEYVEDSGFL 782

Query: 468 GVEGFPKLRELEVIGCSKLKG----TFPEHLPALEMLVIGGCEELLVSITSLPALSKLEI 523
               FP LR+L + G   LKG       E  P LE + I  C   +    +L ++ KLEI
Sbjct: 783 TRRRFPSLRKLHIGGFCNLKGLQRMKGAEQFPVLEEMKISDCP--MFVFPTLSSVKKLEI 840

Query: 524 GGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKR 583
            G       S   +L +  S+          L   +   L  L  L +S ++N     K 
Sbjct: 841 WGEADAGGLSSISNLSTLTSLKIFSNHTVTSLLEEMFKNLENLIYLSVSFLEN----LKE 896

Query: 584 HNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQS 643
               L  +++LK L I +C  L+SL  E  +    L E       L +  C  L  LP+ 
Sbjct: 897 LPTSLASLNNLKCLDIRYCYALESLPEEGLEGLSSLTE-------LFVEHCNMLKCLPEG 949

Query: 644 LLSLSSLREIEIYNCSSFVSFPEVALPSKVRSIS 677
           L  L++L  ++I  C   +   E  +      IS
Sbjct: 950 LQHLTTLTSLKIRGCPQLIKRCEKGIGEDWHKIS 983

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q9LVT4|DRL37_ARATH Probable disease resistance protein At5g47250 OS=Arabidopsis thaliana GN=At5g47250 PE=2 SV=1

 Score = 96.7 bits (239), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 108/240 (45%), Gaps = 12/240 (5%)

Query: 20  IIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWSAVGFLDHRKSENPCEDLG 79
           I   L++SY YL     +CF YC+LFPK Y  +++E++  W   GF+D +      +D G
Sbjct: 389 IFQVLKLSYDYLKTKNAKCFLYCALFPKAYYIKQDELVEYWIGEGFIDEKDGRERAKDRG 448

Query: 80  RKFFQELRARSFFQQSSNNKSLFVMHDLINDLAHWAAGEIYFTMDYTSEVNKQQSFSKNL 139
            +    L       +S  NK ++ MHD+I D+A W   E      Y  + +   S   ++
Sbjct: 449 YEIIDNLVGAGLLLES--NKKVY-MHDMIRDMALWIVSEFRDGERYVVKTDAGLSQLPDV 505

Query: 140 RHLSCICGKY---DGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLF-KLQRLR 195
              + +       + +K   D          + + L N+        I+ K F  +  L 
Sbjct: 506 TDWTTVTKMSLFNNEIKNIPDDPEFPDQTNLVTLFLQNNR----LVDIVGKFFLVMSTLV 561

Query: 196 VFSLC-GYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKL 254
           V  L   + I+ELP  I  L  LR LNLSGT I+ LPE +  L  L  L+LE    LR +
Sbjct: 562 VLDLSWNFQITELPKGISALVSLRLLNLSGTSIKHLPEGLGVLSKLIHLNLESTSNLRSV 621

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38834|R13L4_ARATH Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2

 Score = 94.7 bits (234), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 106/388 (27%), Positives = 167/388 (43%), Gaps = 43/388 (11%)

Query: 16  ERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWSAVGFLDHRKSENPC 75
           E  +++ +L++SY  L + LK C    SL+P+D    +++++  W   GF+  R   +  
Sbjct: 396 ETDNVMSSLQLSYDELPSHLKSCILTLSLYPEDCVIPKQQLVHGWIGEGFVMWRNGRSAT 455

Query: 76  EDLGRKFFQELRARSFFQQSSNNKSLFVM----HDLINDLAHWAAGEIYFTMDYTSEVNK 131
           E  G   F  L  R   +      S  ++    HD++ DL                ++ K
Sbjct: 456 ES-GEDCFSGLTNRCLIEVVDKTYSGTIITCKIHDMVRDLV--------------IDIAK 500

Query: 132 QQSFSK----NLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPK 187
           + SFS     N RHL  I G +D     E    + H    +           L   +  K
Sbjct: 501 KDSFSNPEGLNCRHLG-ISGNFD-----EKQIKVNHKLRGVVSTTKTGEVNKLNSDLAKK 554

Query: 188 LFKLQRLRVF----SLCGYWISELPDSIGDLRYLRYLNLSGTQ-IRTLPESVNKLYNLHT 242
               + LRV     S+    +SE+ D I  L++L  L+LS T  +   P S+  L+NL  
Sbjct: 555 FTDCKYLRVLDISKSIFDAPLSEILDEIASLQHLACLSLSNTHPLIQFPRSMEDLHNLQI 614

Query: 243 LSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGK-DSG 301
           L    C+ L++L   +    KL  L+ +N  SLE  P GIG L  L+ L  F   + ++G
Sbjct: 615 LDASYCQNLKQLQPCIVLFKKLLVLDMTNCGSLECFPKGIGSLVKLEVLLGFKPARSNNG 674

Query: 302 SRLRELKLLTHLRG-TLTISK---LENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKG 357
            +L E+K LT+LR   L++++   +E  +LD   NL  LM    N  D       +    
Sbjct: 675 CKLSEVKNLTNLRKLGLSLTRGDQIEEEELDSLINLSKLMSISINCYDSY----GDDLIT 730

Query: 358 VLDMLKPHKNLEQFFISGYGGTKFPIWL 385
            +D L P   L +  +  Y G   P WL
Sbjct: 731 KIDALTPPHQLHELSLQFYPGKSSPSWL 758

Disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O81825|DRL28_ARATH Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1

 Score = 90.5 bits (223), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 130/282 (46%), Gaps = 22/282 (7%)

Query: 20  IIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWSAVGFLDHRKSENPCEDLG 79
           I   L++SY +L   +K CF +C+LFP+DY  +  E+I+ W A G LD +       + G
Sbjct: 348 IFGTLKLSYDFLQDNMKSCFLFCALFPEDYSIKVSELIMYWVAEGLLDGQHHYEDMMNEG 407

Query: 80  RKFFQELRARSFFQQSSNNKSLFVMHDLINDLAHW---AAGEIYFTMDYTSE---VNKQQ 133
               + L+     +   +  ++  MHD++ D A W   + GE + ++           Q 
Sbjct: 408 VTLVERLKDSCLLEDGDSCDTV-KMHDVVRDFAIWFMSSQGEGFHSLVMAGRGLIEFPQD 466

Query: 134 SFSKNLRHLSCICGKYDGVKRFEDLYN--IQHLRTFLPVCLSNSSQGFLAHSILPKLFKL 191
            F  +++ +S +  K       E L N  I+ + T + +   NS    + +  L      
Sbjct: 467 KFVSSVQRVSLMANK------LERLPNNVIEGVETLVLLLQGNSHVKEVPNGFLQ---AF 517

Query: 192 QRLRVFSLCGYWISELPDSIGDLRYLRYLNLSG-TQIRTLPESVNKLYNLHTLSLEGCRG 250
             LR+  L G  I  LPDS  +L  LR L L    ++R LP S+  L  L  L L     
Sbjct: 518 PNLRILDLSGVRIRTLPDSFSNLHSLRSLVLRNCKKLRNLP-SLESLVKLQFLDLHES-A 575

Query: 251 LRKLCAGMGNLIKLHHLNNSNTDSLEEMPLG-IGKLTCLQTL 291
           +R+L  G+  L  L ++  SNT  L+ +P G I +L+ L+ L
Sbjct: 576 IRELPRGLEALSSLRYICVSNTYQLQSIPAGTILQLSSLEVL 617

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P0DI18|DRL45_ARATH Probable disease resistance protein RDL6 OS=Arabidopsis thaliana GN=RDL6 PE=2 SV=1

 Score = 88.6 bits (218), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 136/504 (26%), Positives = 209/504 (41%), Gaps = 72/504 (14%)

Query: 23  ALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWSAVGFLDHRKSENP-CEDLGRK 81
            L +S+  L + LK CF Y + FP DYE   + +   W+A G    R  +     D+G  
Sbjct: 412 VLSLSFEELPSYLKHCFLYLAHFPDDYEINVKNLSYYWAAEGIFQPRHYDGEIIRDVGDV 471

Query: 82  FFQELRARSFFQQSSNNKSLFV----MHDLINDLAHWAAGEIYFTMDYTSEVNKQQSFSK 137
           + +EL  R+      + K+       +HD++ ++    A E  F    +S  +   S S 
Sbjct: 472 YIEELVRRNMVISERDVKTSRFETCHLHDMMREVCLLKAKEENFLQITSSRTSTGNSLS- 530

Query: 138 NLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLF-KLQRLRV 196
            +     +  +Y      E   N   LR+ + V  +    G  +  +L   F +L+ LRV
Sbjct: 531 -IVTSRRLVYQYPITLDVEKDINDPKLRSLVVVANTYMFWGGWSWMLLGSSFIRLELLRV 589

Query: 197 FSLCGYWI--SELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKL 254
             +    +   +L  SIG L +LRYLNL   ++  +P S+  L  L  L+L        L
Sbjct: 590 LDIHRAKLKGGKLASSIGQLIHLRYLNLKHAEVTHIPYSLGNLKLLIYLNLVILVSGSTL 649

Query: 255 CAG-MGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHL 313
               +  + +L +L     D   +  L +  L  L+TL NF     S   L +L+ +  L
Sbjct: 650 VPNVLKEMQQLRYLALPK-DMGRKTKLELSNLVKLETLKNFSTKNCS---LEDLRGMVRL 705

Query: 314 RGTLTI-----SKLEN--AQLDGKKNLKVLMLRWTNSTD-GSSLREAET---------QK 356
           R TLTI     + LE   A + G K L+ L +     TD GS +R  E          + 
Sbjct: 706 R-TLTIELRKETSLETLAASIGGLKYLESLTI-----TDLGSEMRTKEAGIVFDFVYLKT 759

Query: 357 GVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTT-LPSVGQLPS 415
             L +  P  + EQ F                  S+L TL  + C +    +P + +L  
Sbjct: 760 LTLKLYMPRLSKEQHFP-----------------SHLTTLYLQHCRLEEDPMPILEKLHQ 802

Query: 416 LKHLAVRRMSRVRRLGSEFYGND---TPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGF 472
           LK L +RR S        F G +   +   FP L+ L  + L EWEDW    S+      
Sbjct: 803 LKELELRRKS--------FSGKEMVCSSGGFPQLQKLSIKGLEEWEDWKVEESS-----M 849

Query: 473 PKLRELEVIGCSKLKGTFPEHLPA 496
           P L  L++  C KLK    EHLP+
Sbjct: 850 PVLHTLDIRDCRKLKQLPDEHLPS 873

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	831
284026888	1424	CC-NBS-LRR protein [Quercus suber]	0.920	0.537	0.412	1e-156
225450023	1396	PREDICTED: putative disease resistance p	0.960	0.571	0.412	1e-156
400131587	1388	FB_MR5 [Malus x robusta]	0.925	0.554	0.421	1e-156
147819724	1481	hypothetical protein VITISV_007111 [Viti	0.956	0.536	0.407	1e-154
225450019	1394	PREDICTED: putative disease resistance p	0.956	0.570	0.407	1e-154
225449649	1418	PREDICTED: putative disease resistance p	0.966	0.566	0.401	1e-153
147766392	1471	hypothetical protein VITISV_007674 [Viti	0.957	0.541	0.411	1e-152
225450001	1389	PREDICTED: putative disease resistance p	0.962	0.575	0.387	1e-152
451798992	1440	disease resistance protein At3g14460-lik	0.959	0.553	0.402	1e-152
359487416	1472	PREDICTED: putative disease resistance p	0.959	0.541	0.402	1e-151

>gi|284026888|gb|ADB66335.1| CC-NBS-LRR protein [Quercus suber]

 Score =  558 bits (1439), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 357/865 (41%), Positives = 490/865 (56%), Gaps = 100/865 (11%)

Query: 1    DWEGVLSCNIWDLPEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLW 60
            +WE +++  +W       DI P LR+SY++L   LK+CFAYCSLFP+DYEFEE+++ILLW
Sbjct: 388  EWEDIMNSKLWSSSNMGSDIFPILRLSYHHLPHHLKRCFAYCSLFPRDYEFEEKQLILLW 447

Query: 61   SAVGFLDHRKSENPCEDLGRKFFQELRARSFFQQSSNNKSLFVMHDLINDLAHWAAGEIY 120
             A G +   + + P EDLG ++F++L +RSFFQQSS+NKS FVMHDLI DLA W AG  Y
Sbjct: 448  MAEGLIYQAEGDKPMEDLGGEYFRDLLSRSFFQQSSSNKSRFVMHDLITDLAQWVAGISY 507

Query: 121  FTMDYTSEVNKQQSFSKNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFL 180
            F ++   + N+Q   S   RHLS +  +YDG K+FE +   +HLRTFLP+        +L
Sbjct: 508  FRLETKLKGNEQSKVSSKARHLSFVGSRYDGAKKFEAISEFKHLRTFLPLMAPYVGYSYL 567

Query: 181  AHSILPKLF-KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYN 239
            ++ I+ +L  KLQ LRV SL GY I  LP +IGDL++LRYL+LS TQ+R+LP S++ LYN
Sbjct: 568  SYHIINQLLPKLQNLRVLSLSGYRIVYLPQTIGDLKHLRYLDLSCTQLRSLPTSISTLYN 627

Query: 240  LHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGK- 298
            L TL LE C  L+ L    G L  L HLN   ++ LE MPL IG L+ LQTL NFVVGK 
Sbjct: 628  LQTLLLENCTSLKFLPPDFGKLFNLRHLNIFGSNLLEGMPLSIGNLSSLQTLSNFVVGKA 687

Query: 299  DSGSRLRELKLLTHLRGTLTISKLEN---------AQLDGKKNLKVLMLRWTNSTDGSSL 349
            DS   +REL  L HLRGTL ISKLEN         + L GK++L  +++ W+++ + S  
Sbjct: 688  DSFCVIRELGPLVHLRGTLCISKLENVTKAQEARDSYLYGKQDLNEVVMEWSSNLNES-- 745

Query: 350  REAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPS 409
            ++ ETQ  VL+ML+P+  L++  +  YGGTKFP W+GD SFSNLV L+FE+C  C +LP 
Sbjct: 746  QDEETQLEVLNMLQPNVKLKELTVKCYGGTKFPTWIGDPSFSNLVLLRFENCDNCNSLPP 805

Query: 410  VGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGV 469
            VGQLP LK L ++ M+ V+ +G EFYG     PF  LETL FE++  W +WIP G     
Sbjct: 806  VGQLPFLKDLLIKGMAGVKSVGREFYGESCSRPFQSLETLHFEDMPRWVNWIPLGVN--- 862

Query: 470  EGFPKLRELEVIGCSKLKGTFPEHLPALEMLVIGGCEELLVSITSLPALSKLEIGGCKKV 529
            E F  L +L +I C  L    P+HLP+L+ LVI GC  ++VS+++LP L  L I GCK+V
Sbjct: 863  EAFACLHKLSIIRCHNLVRKLPDHLPSLKKLVIHGCWNMVVSVSNLPMLCVLVIEGCKRV 922

Query: 530  VWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQ 589
               S     GS  S+              L   + K+E L+I + +  T +W++    L 
Sbjct: 923  ECESSVG-FGSPYSMAFSKISEFGNATAGLMHGVSKVEYLKIVDSEKLTTLWEKIPEGLH 981

Query: 590  DISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSLLSLSS 649
             +  L+ L+I  CPT                                LV  P S    S 
Sbjct: 982  RLKFLRELSIEDCPT--------------------------------LVSFPASGFP-SM 1008

Query: 650  LREIEIYNCSSFVS-FPEVALPSK----VRSISIHRCDALKSLPEAWMCDANLSLEILTI 704
            L+ I+I +CS   S  PE  L S+    +  + + RCD++KS                  
Sbjct: 1009 LKVIQIKSCSGLKSLLPEGTLHSRENACLERLCVVRCDSMKS------------------ 1050

Query: 705  SRCHSLTYIAEVQLPPSLKNVVIRNCDNVRTL-------TVEEGIQSSSSRRYTSSLLEH 757
                    IA  QLP +LK + I +C N++ +       +   G+        + + L++
Sbjct: 1051 --------IARGQLPTTLKKLEISHCMNLQCVLDEGEGSSSSSGMHDEDINNRSKTHLQY 1102

Query: 758  LHIESCPSLTCIFSKNELLATLESL------------EVGNLPPSLKSLEVLSCSKLESI 805
            L I+SCPSLT + S  +L ATL  L              G LP +L+ LE+ S SKL+ I
Sbjct: 1103 LDIKSCPSLTTLTSSGKLPATLTHLLLRECPKLMCLSSTGKLPAALQYLEIQSISKLQKI 1162

Query: 806  AERLDNNTSLETITIISCKNLKNLP 830
            AERL  NTSLE I I +C  LK+LP
Sbjct: 1163 AERLHQNTSLECIKIWNCHGLKSLP 1187

Source: Quercus suber

Species: Quercus suber

Genus: Quercus

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450023|ref|XP_002272823.1| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera] gi|451798994|gb|AGF69195.1| disease resistance protein At3g14460-like protein 2 [Vitis labrusca]

 Score =  558 bits (1438), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 353/856 (41%), Positives = 492/856 (57%), Gaps = 58/856 (6%)

Query: 1    DWEGVLSCNIWDLPEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLW 60
            +W  +L+  IWDLP ++C I+PALR+SY +L +PLK+CF+YC++FPKDYEF++ E+I LW
Sbjct: 398  EWNVILTSKIWDLPSDKCGILPALRLSYNHLPSPLKRCFSYCAIFPKDYEFDKRELIRLW 457

Query: 61   SAVGFLDH---RKSENPCEDLGRKFFQELRARSFFQQSSNNKSLFVMHDLINDLAHWAAG 117
             A   + H    + +   EDLG  +FQEL +RSFFQ SS+NKS FVMHDL+NDLA +  G
Sbjct: 458  MAESLIQHLECHRQQIEIEDLGANYFQELLSRSFFQPSSSNKSQFVMHDLVNDLAKFVGG 517

Query: 118  EIYFTMDYTSEVNKQQSFSKNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSN-SS 176
            EI F+++   E N+QQ+ SK  RH S I  +YD  K+FE  Y +++LRTF+ + +     
Sbjct: 518  EICFSLEKNLEGNQQQTISKKARHSSFIRDRYDIFKKFEAFYGMENLRTFIALPIDPLWD 577

Query: 177  QGFLAHSILPKLF-KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVN 235
              +L++ +L  L  KL+RLRV  L GY ISE+P S+GDL++LRYLNLS T+++ LP+S+ 
Sbjct: 578  YNWLSNKVLEGLMPKLRRLRVLLLSGYRISEIPSSVGDLKHLRYLNLSRTKVKRLPDSLG 637

Query: 236  KLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFV 295
             L+NL TL L  CR L +L   +GNL  L HL+ +NT+ LEEMP  I KL  LQ L NF+
Sbjct: 638  NLHNLETLILSNCRKLIRLPLSIGNLNNLRHLDVTNTN-LEEMPPRICKLKGLQVLSNFI 696

Query: 296  VGKDSGSRLRELKLLTHLRGTLTISKLEN---------AQLDGKKNLKVLMLRWTNSTDG 346
            VGKD+G  ++EL+ +  L+G L ISKLEN         A L+ K+ L+ L + W+   + 
Sbjct: 697  VGKDNGLNVKELRNMPQLQGGLCISKLENVANVQDARDASLNKKQKLEELTIEWSAGLND 756

Query: 347  SSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTT 406
            S    A  QK VLD L+PH NL +  I  YGG +FP W+GD SFS +V +   +C  CT+
Sbjct: 757  S--HNARNQKDVLDSLQPHFNLNKLKIEYYGGPEFPPWIGDVSFSKMVDVNLVNCRNCTS 814

Query: 407  LPSVGQLPSLKHLAVRRMSRVRRLGSEFYGND--TPIPFPCLETLRFENLLEWEDWIPHG 464
            LP +G LP LKH+ +  +  V+ +G EFYG       PFP LE+L F  + +WEDW    
Sbjct: 815  LPCLGWLPMLKHVRIEGLKEVKIVGREFYGETCLPNKPFPSLESLSFSAMSQWEDW---E 871

Query: 465  STQGVEGFPKLRELEVIGCSKLKGTFPEHLPALEMLVIGGCEELLVSITSLPALSKLEIG 524
            S    E +P L  LE+I C KL    P +LP+L    IG C +L+  +  LP+LSKL + 
Sbjct: 872  SPSLSEPYPCLLHLEIINCPKLIKKLPTNLPSLVHFSIGTCPQLVSPLERLPSLSKLRVQ 931

Query: 525  GCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRH 584
             C + V RS  + L S   +     +    L       L  L+ L+I      T +W+  
Sbjct: 932  DCNEAVLRSGLE-LPSLTELGIDRMVGLTRLHEGCMQLLSGLQVLDIDRCDKLTCLWE-- 988

Query: 585  NGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSL 644
            NGF      +++L    CP L SL  E+EK      EL  +L+ L +  C  L KLP  L
Sbjct: 989  NGF----DGIQQLQTSSCPELVSL-GEKEKH-----ELPSKLQSLKIRWCNNLEKLPNGL 1038

Query: 645  LSLSSLREIEIYNCSSFVSFPEVALPSKVRSISIHRCDALKSLPEAWMCDANLS------ 698
              L+ L E+EIY+C   VSFPE+  P  +R + IH C+ L+ LP+  M   + S      
Sbjct: 1039 YRLTCLGELEIYDCPKLVSFPELGFPPMLRRLVIHSCEGLRCLPDWMMVMKDGSNNGSDV 1098

Query: 699  --LEILTISRCHSLTYIAEVQLPPSLKNVVIRNCDNVRTLTVEEGIQSSSSRRYTSSLLE 756
              LE L I  C SL    E +LP +LK + I  C+ + +L        S++   TS  L 
Sbjct: 1099 CLLEYLHIHTCPSLIGFPEGELPTTLKELKIWRCEKLESLPGGMMHHDSNTTTATSGGLH 1158

Query: 757  HLHIESCPSLTCIFSKNELLATLESLEVGNLPPSLKSLEVLSCSKLESIAERL--DNNTS 814
             L I  CPSLT                 G  P +LK LE+  C++LESI++     NN+S
Sbjct: 1159 VLDIWKCPSLTF-------------FPTGKFPSTLKKLEIWDCAQLESISKETFHSNNSS 1205

Query: 815  LETITIISCKNLKNLP 830
            LE ++I S   LK +P
Sbjct: 1206 LEYLSIRSYPCLKIVP 1221

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|400131587|emb|CCH50986.1| FB_MR5 [Malus x robusta]

 Score =  558 bits (1437), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 364/864 (42%), Positives = 499/864 (57%), Gaps = 95/864 (10%)

Query: 1    DWEGVLSCNIWDLPEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLW 60
            +WE +L+  +W L  E  DI+P LR++Y+YL + LK+CFAYCS+ P DYEFEE+++ILLW
Sbjct: 388  EWEDILNNKLWSLSNEH-DILPVLRLTYFYLPSHLKRCFAYCSILPNDYEFEEKQMILLW 446

Query: 61   SAVGFLDHR-KSENPCEDLGRKFFQELRARSFFQQSSNNKSLFVMHDLINDLAHWAAGEI 119
             A GF+  R + +   EDLG  +F++L +RS FQ+S+   S +VMHDLI DLA WAAGEI
Sbjct: 447  MAEGFILPRPEDKKQIEDLGADYFRDLVSRSLFQKSTKCISKYVMHDLIGDLARWAAGEI 506

Query: 120  YFTM-DYTSEVNKQQSFSKNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQG 178
             F + D  ++  +Q       RH S I G  DGVKRFE    +++LRTFLP+   +S   
Sbjct: 507  CFRLEDKQNDDGEQLRCFPKARHSSYIRGLSDGVKRFEVFSELKYLRTFLPL-RKDSFWN 565

Query: 179  FLAHSILPKLF-KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKL 237
            +L+  +   L  KLQ LRV S   Y I+ELPDSIGDLRYLRYL+LS T I +LP+S + L
Sbjct: 566  YLSRQVAFDLLPKLQYLRVLSFNCYKITELPDSIGDLRYLRYLDLSYTDITSLPKSTSTL 625

Query: 238  YNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVG 297
            YNL TL LEGC  L+ L   M NL+ L HLNNSN   LE+MP  +G+L  LQ+L  FVV 
Sbjct: 626  YNLQTLILEGCSKLKALPIDMSNLVNLRHLNNSNVSLLEDMPPQLGRLVNLQSLTKFVVS 685

Query: 298  ---KDSGSRLRELKLLTHLRGTLTISKLEN---------AQLDGKKNLKVLMLRWTNSTD 345
                   S +REL+ L HLRGTL IS+LEN         A L+ K+ L  L+L W++S+D
Sbjct: 686  GGGGGDRSGIRELEFLMHLRGTLCISRLENVTDVEDAQRANLNCKERLDSLVLEWSHSSD 745

Query: 346  GSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCT 405
                   ET+  VLDML+PH  L++  I  Y G +F  W+G   FSN+V ++ E+C  C 
Sbjct: 746  TR-----ETESAVLDMLQPHTKLKELTIKSYAGKEFSSWVGVPLFSNMVLVRLEECNNCL 800

Query: 406  TLPSVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGS 465
            +LP +G+LP LK L +R M+ V  +G+EFYG +  +PFP LETL F ++  W+ W+P  +
Sbjct: 801  SLPPLGKLPHLKELYIRGMNAVESVGAEFYG-ECSLPFPLLETLEFVDMQHWKVWLPFQT 859

Query: 466  TQGVEGFPKLRELEVIGCSKLKGTFPEHLPALEMLVIGGCEELLVSITSLPALSKLEIGG 525
                  FP L+ L V  CSKL+G  PE+L +L  L I  CEELLVSI +   L +L I G
Sbjct: 860  DHRGSVFPCLKTLLVRKCSKLEGKLPENLDSLASLEIVKCEELLVSIANYKQLRQLNIDG 919

Query: 526  CKKVV--------------WRSETDHLGS-QNSVVCRDTLNQVLLAGPLKPRLPKLEELE 570
            CK VV              + S    L S Q   +CR+ LN V        ++   EEL 
Sbjct: 920  CKGVVHTAAKVEFELLESLYLSNISELTSLQTGELCRNGLNMV-----RDLKINGCEEL- 973

Query: 571  ISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLL 630
             S++KNE  +       LQ + SL RL I     L   + +E  +  QL  L C+LE+L 
Sbjct: 974  TSSLKNEAIL-------LQQLISLGRLEIEDNSLLVEELGKEADELLQLQILGCKLEFLK 1026

Query: 631  LNDCKGLVKLPQSLLSLSSLREIEIYNCSSFVSFPEVALPSKVRSISIHRCDALKSLPEA 690
            L  CK L+KLP+ L  LSSL+E+ I+ CSS VSFP+V LP  ++ I              
Sbjct: 1027 LKKCKNLLKLPEGLNQLSSLQELRIHECSSLVSFPDVGLPPSLKDIE------------- 1073

Query: 691  WMCDANLSLEILTISRCHSLTYIAEVQLPPSLKNVVIRNCDNVRTLTVEEGIQSSSSRRY 750
                         I+ CHSL Y A+ Q+P +L+ + IR+C ++R+L   E + S SS  +
Sbjct: 1074 -------------ITECHSLIYFAKSQIPQNLRRIQIRDCRSLRSLVDNEAVGSCSSSSH 1120

Query: 751  TSSLLEHLHIESCPSLTCIFSKNELLATLESLEVGNLPPSLKSLEVLSCSKLESIAER-- 808
                LE+L+IE C SLT +   ++L+             +L+ L++  C +LE +A    
Sbjct: 1121 NC--LEYLNIERCQSLTLLSLSDQLVR------------ALRELDIYDCEQLEFLAPDGL 1166

Query: 809  LDNNTS--LETITIISCKNLKNLP 830
              NNT+  LE   I  C+NLK+LP
Sbjct: 1167 FCNNTNYFLENFRIRRCQNLKSLP 1190

Source: Malus x robusta

Species: Malus x robusta

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147819724|emb|CAN69227.1| hypothetical protein VITISV_007111 [Vitis vinifera]

 Score =  553 bits (1426), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 349/856 (40%), Positives = 487/856 (56%), Gaps = 61/856 (7%)

Query: 2    WEGVLSCNIWDLPEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWS 61
            W  +L+  IWDLP ++C I+PALR+SY +L +PLK+CF+YC++FPKDYEF++ E+I LW 
Sbjct: 400  WNVILTSKIWDLPSDKCGILPALRLSYNHLPSPLKRCFSYCAIFPKDYEFDKRELIRLWM 459

Query: 62   AVGFL---DHRKSENPCEDLGRKFFQELRARSFFQQSSNNKSLFVMHDLINDLAHWAAGE 118
            A   +   +    +   EDLG  +FQEL +RSFFQ SS+NKS FVMHDL+NDLA +  GE
Sbjct: 460  AESLIQCPERYGRQIEIEDLGDDYFQELLSRSFFQPSSSNKSQFVMHDLVNDLAKFVGGE 519

Query: 119  IYFTMDYTSEVNKQQSFSKNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQ- 177
            I F+++   E N+QQ+ SK  RH S I G+YD  K+FE  Y +++LRTF+ + +  S + 
Sbjct: 520  ICFSLEENLEGNQQQTISKKARHSSFIRGRYDVFKKFEAFYGMEYLRTFIALPIDASWRC 579

Query: 178  GFLAHSILPKLF-KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNK 236
             +L++ +L  L  KLQRLRV SL GYWISE+P S+GDL++LRYLNLS T ++ LP+S+  
Sbjct: 580  NWLSNKVLEGLMPKLQRLRVLSLSGYWISEIPSSVGDLKHLRYLNLSETGVKRLPDSLGN 639

Query: 237  LYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVV 296
            L+NL TL L  C  L +L   + NL  L HL+ +NT+ LEEM L I KL  LQ L  F+V
Sbjct: 640  LHNLETLVLSNCWRLIRLPLSIENLNNLRHLDVTNTN-LEEMSLRICKLKSLQVLSKFIV 698

Query: 297  GKDSGSRLRELKLLTHLRGTLTISKLEN---------AQLDGKKNLKVLMLRWTNSTDGS 347
            GKD+G  ++EL+ + HL+G L IS LEN         A L+ K+ L+ L + W+   D S
Sbjct: 699  GKDNGLNVKELRNMPHLQGGLCISNLENVANVQDARDASLNKKQKLEELTIEWSAGLDDS 758

Query: 348  SLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTL 407
                A  Q  VLD L+PH NL +  I  YGG +FP W+GD SFS +V +   +C  CT+L
Sbjct: 759  --HNARNQIDVLDSLQPHFNLNKLKIEYYGGPEFPRWIGDVSFSKMVDVNLVNCRNCTSL 816

Query: 408  PSVGQLPSLKHLAVRRMSRVRRLGSEFYGND--TPIPFPCLETLRFENLLEWEDWIPHGS 465
            P +G LP LKH+ +  +  V+ +G EFYG       PFP LE+L F ++ +WEDW    S
Sbjct: 817  PCLGWLPMLKHVRIEGLKEVKIVGREFYGETCLPNKPFPSLESLSFSDMSQWEDW---ES 873

Query: 466  TQGVEGFPKLRELEVIGCSKLKGTFPEHLPALEMLVIGGCEELLVSITSLPALSKLEIGG 525
                E +P L  LE++ C KL    P +LP+L  L I  C  L+  +  LP+LSKL +  
Sbjct: 874  PSLSEPYPCLLYLEIVNCPKLIKKLPTYLPSLVHLSIWRCPLLVSPVERLPSLSKLRVED 933

Query: 526  CKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRHN 585
            C + V RS  + L S   +     +    L       L  L+ L+I        +W+  N
Sbjct: 934  CNEAVLRSGLE-LPSLTELGILRMVGLTRLHEWCMQLLSGLQVLDIDECDELMCLWE--N 990

Query: 586  GFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSLL 645
            GF    + L++L    C  L SL  +E+       EL  +L+ L +  C  L KLP  L 
Sbjct: 991  GF----AGLQQLQTSNCLELVSLGKKEKH------ELPSKLQSLKIRRCNNLEKLPNGLH 1040

Query: 646  SLSSLREIEIYNCSSFVSFPEVALPSKVRSISIHRCDALKSLPEAWMCDANLS------- 698
             L+ L E++I NC   V FPE+  P  +R + I+ C  L  LP+  M   + S       
Sbjct: 1041 RLTCLGELKISNCPKLVLFPELGFPPMLRRLVIYSCKGLPCLPDWMMVMKDGSNNGSDVC 1100

Query: 699  -LEILTISRCHSLTYIAEVQLPPSLKNVVIRNCDNVRTLTVEEGIQSSSSRRYTSSLLEH 757
             LE L I  C SL    E +LP +LK + I  C+N+ +L    GI    S   TS  L  
Sbjct: 1101 LLEYLEIDGCPSLIGFPEGELPATLKELRIWRCENLESLP--GGIMHHDSNT-TSYGLHA 1157

Query: 758  LHIESCPSLTCIFSKNELLATLESLEVGNLPPSLKSLEVLSCSKLESIAERL--DNNTSL 815
            L+I  CPSLT                 G  P +LK L++  C++LE I+E +   NN+SL
Sbjct: 1158 LYIGKCPSLTF-------------FPTGKFPSTLKKLQIWDCAQLEPISEGMFHSNNSSL 1204

Query: 816  ETITIISCKNLKNLPT 831
            E ++I S + LK +P 
Sbjct: 1205 EYLSIWSYRCLKIVPN 1220

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450019|ref|XP_002272632.1| PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera] gi|451798996|gb|AGF69196.1| disease resistance protein At3g14460-like protein 3 [Vitis labrusca]

 Score =  552 bits (1423), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 349/856 (40%), Positives = 487/856 (56%), Gaps = 61/856 (7%)

Query: 2    WEGVLSCNIWDLPEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWS 61
            W  +L+  IWDLP ++C I+PALR+SY +L +PLK+CF+YC++FPKDYEF++ E+I LW 
Sbjct: 400  WNVILTSKIWDLPSDKCGILPALRLSYNHLPSPLKRCFSYCAIFPKDYEFDKRELIRLWM 459

Query: 62   AVGFL---DHRKSENPCEDLGRKFFQELRARSFFQQSSNNKSLFVMHDLINDLAHWAAGE 118
            A   +   +    +   EDLG  +FQEL +RSFFQ SS+NKS FVMHDL+NDLA +  GE
Sbjct: 460  AESLIQCPERYGRQIEIEDLGDDYFQELLSRSFFQPSSSNKSQFVMHDLVNDLAKFVGGE 519

Query: 119  IYFTMDYTSEVNKQQSFSKNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQ- 177
            I F+++   E N+QQ+ SK  RH S I G+YD  K+FE  Y +++LRTF+ + +  S + 
Sbjct: 520  ICFSLEENLEGNQQQTISKKARHSSFIRGRYDVFKKFEAFYGMEYLRTFIALPIDASWRC 579

Query: 178  GFLAHSILPKLF-KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNK 236
             +L++ +L  L  KLQRLRV SL GYWISE+P S+GDL++LRYLNLS T ++ LP+S+  
Sbjct: 580  NWLSNKVLEGLMPKLQRLRVLSLSGYWISEIPSSVGDLKHLRYLNLSETGVKRLPDSLGN 639

Query: 237  LYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVV 296
            L+NL TL L  C  L +L   + NL  L HL+ +NT+ LEEM L I KL  LQ L  F+V
Sbjct: 640  LHNLETLVLSNCWRLIRLPLSIENLNNLRHLDVTNTN-LEEMSLRICKLKSLQVLSKFIV 698

Query: 297  GKDSGSRLRELKLLTHLRGTLTISKLEN---------AQLDGKKNLKVLMLRWTNSTDGS 347
            GKD+G  ++EL+ + HL+G L IS LEN         A L+ K+ L+ L + W+   D S
Sbjct: 699  GKDNGLNVKELRNMPHLQGGLCISNLENVANVQDARDASLNKKQKLEELTIEWSAGLDDS 758

Query: 348  SLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTL 407
                A  Q  VLD L+PH NL +  I  YGG +FP W+GD SFS +V +   +C  CT+L
Sbjct: 759  --HNARNQIDVLDSLQPHFNLNKLKIEYYGGPEFPRWIGDVSFSKMVDVNLVNCRNCTSL 816

Query: 408  PSVGQLPSLKHLAVRRMSRVRRLGSEFYGND--TPIPFPCLETLRFENLLEWEDWIPHGS 465
            P +G LP LKH+ +  +  V+ +G EFYG       PFP LE+L F ++ +WEDW    S
Sbjct: 817  PCLGWLPMLKHVRIEGLKEVKIVGREFYGETCLPNKPFPSLESLSFSDMSQWEDW---ES 873

Query: 466  TQGVEGFPKLRELEVIGCSKLKGTFPEHLPALEMLVIGGCEELLVSITSLPALSKLEIGG 525
                E +P L  LE++ C KL    P +LP+L  L I  C  L+  +  LP+LSKL +  
Sbjct: 874  PSLSEPYPCLLYLEIVNCPKLIKKLPTYLPSLVHLSIWRCPLLVSPVERLPSLSKLRVED 933

Query: 526  CKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRHN 585
            C + V RS  + L S   +     +    L       L  L+ L+I        +W+  N
Sbjct: 934  CNEAVLRSGLE-LPSLTELGILRMVGLTRLHEWCMQLLSGLQVLDIDECDELMCLWE--N 990

Query: 586  GFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSLL 645
            GF    + L++L    C  L SL  +E+       EL  +L+ L +  C  L KLP  L 
Sbjct: 991  GF----AGLQQLQTSNCLELVSLGKKEKH------ELPSKLQSLKIRRCNNLEKLPNGLH 1040

Query: 646  SLSSLREIEIYNCSSFVSFPEVALPSKVRSISIHRCDALKSLPEAWMCDANLS------- 698
             L+ L E++I NC   V FPE+  P  +R + I+ C  L  LP+  M   + S       
Sbjct: 1041 RLTCLGELKISNCPKLVLFPELGFPPMLRRLVIYSCKGLPCLPDWMMVMKDGSNNGSDVC 1100

Query: 699  -LEILTISRCHSLTYIAEVQLPPSLKNVVIRNCDNVRTLTVEEGIQSSSSRRYTSSLLEH 757
             LE L I  C SL    E +LP +LK + I  C+N+ +L    GI    S   TS  L  
Sbjct: 1101 LLEYLEIDGCPSLIGFPEGELPATLKELRIWRCENLESLP--GGIMHHDSNT-TSYGLHA 1157

Query: 758  LHIESCPSLTCIFSKNELLATLESLEVGNLPPSLKSLEVLSCSKLESIAERL--DNNTSL 815
            L+I  CPSLT                 G  P +LK L++  C++LE I+E +   NN+SL
Sbjct: 1158 LYIGKCPSLTF-------------FPTGKFPSTLKKLQIWDCAQLEPISEGMFHSNNSSL 1204

Query: 816  ETITIISCKNLKNLPT 831
            E ++I S + LK +P 
Sbjct: 1205 EYLSIWSYRCLKIVPN 1220

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449649|ref|XP_002262753.1| PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 355/885 (40%), Positives = 496/885 (56%), Gaps = 82/885 (9%)

Query: 1    DWEGVLSCNIWDLPEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLW 60
            +WE VL   IW+ P++  DI+PALR+SY+YL + LK+CFAYCS+FPKDYEF+++E++LLW
Sbjct: 395  EWEDVLYSKIWNFPDKESDILPALRLSYHYLPSHLKRCFAYCSIFPKDYEFDKKELVLLW 454

Query: 61   SAVGFLDHR-KSENPCEDLGRKFFQELRARSFFQQSSNNKSLFVMHDLINDLAHWAAGEI 119
             A G +    K +   ED+G  +F EL +RSFFQ SS N S FVMHDLINDLA + + EI
Sbjct: 455  MAEGLIQQSPKGKKQMEDMGSDYFCELLSRSFFQLSSCNGSRFVMHDLINDLAQYVSEEI 514

Query: 120  YFTMDYTSEVNKQQSFSKNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGF 179
             F ++ + + N++ +FS ++RH S    KY+  ++FED Y  ++LRTFL + +      F
Sbjct: 515  CFHLEDSLDSNQKHTFSGSVRHSSFARCKYEVFRKFEDFYKAKNLRTFLALPIHMQYYDF 574

Query: 180  ------LAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPES 233
                  ++H +LPKL   + LRV SL  Y I ELP+SIGDL++LRYLNLS T I+ LP+S
Sbjct: 575  FHLTDKVSHDLLPKL---RYLRVLSLSHYEIRELPNSIGDLKHLRYLNLSCTIIQELPDS 631

Query: 234  VNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCN 293
            ++ L+NL TL L  CR L +L  G  NLI L HL+ ++T  LE MP  +GKL  LQTL  
Sbjct: 632  LSDLHNLQTLVLFRCRRLNRLPRGFKNLINLRHLDIAHTHQLEVMPPQMGKLKSLQTLSK 691

Query: 294  FVVGKDSGSRLRELKLLTHLRGTLTISKLEN---------AQLDGKKNLKVLMLRWTNST 344
            F+VGK     ++EL  L HLRG L+I  L+N         A L  K +L+ L++ W+++ 
Sbjct: 692  FIVGKSKELGIKELGDLLHLRGKLSILDLQNVVDIQDARDANLKDKHHLEELLMEWSSNM 751

Query: 345  DGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMC 404
               S  E   +  VL  L+P+ NL++  I  YGG  FP W+GD SFS +V L+   C  C
Sbjct: 752  FDDSQNET-IELNVLHFLQPNTNLKKLTIQSYGGLTFPYWIGDPSFSKMVCLELNYCRKC 810

Query: 405  TTLPSVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPI--PFPCLETLRFENLLEWEDWIP 462
            T LPS+G+L SLK L V+ M  V+ +G EFYG  +    PFP LE LRFE++ EWE+W  
Sbjct: 811  TLLPSLGRLSSLKKLCVKGMQGVKSVGIEFYGEPSLCVKPFPSLEFLRFEDMPEWEEWC- 869

Query: 463  HGSTQGVEGFPKLRELEVIGCSKLKGTFPEHLPALEMLVIGGCEELLVSITSLPALSKLE 522
                   E +P+LRELE+  C KL    P HLP+L  L I  C +L+  + SLP L  L 
Sbjct: 870  -----SSESYPRLRELEIHHCPKLIQKLPSHLPSLVKLDIIDCPKLVAPLPSLPFLRDLI 924

Query: 523  IGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWK 582
            +  C + + RS  D L S  ++   +  N   L   L   L  LE LEI N     ++ +
Sbjct: 925  VAECNEAMLRSGGD-LTSLITLRLENISNLTFLNEGLVRFLGALEVLEICNCSELKFLLQ 983

Query: 583  RHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQ 642
               GF +++S ++ L I  CP L  L+AE++        L C LEYL +N C  L KLP 
Sbjct: 984  SGVGF-ENLSCIRHLVIVMCPKL-VLLAEDQP-------LPCNLEYLEINKCASLEKLPI 1034

Query: 643  SLLSLSSLREIEIYNCSSFVSFPEVALPSKVRSISIHRCDALKSLPEAWMCDANLS---- 698
             L SL+SLRE+ I  C    S  E+  P  + S+ ++ C+ L+SLP+  M +        
Sbjct: 1035 GLQSLTSLRELSIQKCPKLCSLAEMDFPPMLISLELYDCEGLESLPDGMMINGENRNFCL 1094

Query: 699  LEILTISRCHSLTYIAEVQLPPSLKNVVIRNCDNVRTLTVEEGIQSSSSRRYTSSLLEHL 758
            LE L I  C SL      +LP  LK + I +C  +++L   EG+       +    LE L
Sbjct: 1095 LECLKIVHCPSLICFPRGELPSKLKELEIIDCAKLQSLP--EGLILGDHTCH----LEFL 1148

Query: 759  HIESCPSLTCIFSKNELLATLESLEVGNLPP----------------------------- 789
             I  CP L+  F +  L +T++ LE+ N                                
Sbjct: 1149 RIHRCPLLSS-FPRGLLPSTMKRLEIRNCKQLESISLLSHSTTLEYLRIDRLKINFSGCL 1207

Query: 790  -SLK---SLEVLSCSKLESIAERLDNNTSLETITIISCKNLKNLP 830
             SLK    L + SCS LES  ER  ++ +L+ + I  CKNLK+LP
Sbjct: 1208 HSLKHLIELHIYSCSGLESFPERGFSSPNLKMLHIDDCKNLKSLP 1252

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766392|emb|CAN67818.1| hypothetical protein VITISV_007674 [Vitis vinifera]

 Score =  545 bits (1405), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 352/856 (41%), Positives = 491/856 (57%), Gaps = 60/856 (7%)

Query: 2    WEGVLSCNIWDLPEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWS 61
            W  +L+  IWDLP ++C I+PALR+SY +L +P+K+CF+YC++FPKDYEF++ E+I LW 
Sbjct: 400  WNVILTSKIWDLPSDKCGILPALRLSYNHLPSPVKRCFSYCAIFPKDYEFDKRELIRLWM 459

Query: 62   AVGFLDHRK---SENPCEDLGRKFFQELRARSFFQQSSNNKSLFVMHDLINDLAHWAAGE 118
            A   +   K    +   EDLG  +FQEL ++SFFQ SS+NKS FVMHDL+NDLA +  GE
Sbjct: 460  AENLIQRSKCYGQQIEIEDLGDDYFQELFSQSFFQLSSSNKSQFVMHDLVNDLAKFVGGE 519

Query: 119  IYFTMDYTSEVNKQQSFSKNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQG 178
            I F+++   E N+QQ+ SK  RH S I G YD  K+FE  Y +++LRTF+ + + ++S G
Sbjct: 520  ICFSLEENLEGNQQQTISKKARHSSFIRGSYDVFKKFEAFYGMENLRTFIALPI-DASWG 578

Query: 179  F--LAHSILPKLF-KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVN 235
            +  L++ +L  L  KL+RLRV SL  Y ISE+P SIGDL++LRYLNLS T+++ LP+S+ 
Sbjct: 579  YDWLSNKVLEGLMPKLRRLRVLSLSTYRISEIPSSIGDLKHLRYLNLSRTKVKWLPDSLG 638

Query: 236  KLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFV 295
             LYNL TL L  C  L +L   + NL  L HL+ +NT+ LEEMPL I KL  LQ L  F+
Sbjct: 639  NLYNLETLILSNCSKLIRLALSIENLNNLRHLDVTNTN-LEEMPLRICKLKSLQVLSKFI 697

Query: 296  VGKDSGSRLRELKLLTHLRGTLTISKLEN---------AQLDGKKNLKVLMLRWTNSTDG 346
            VGKD+G  ++EL+ + HL+  L IS LEN         A L+ K+ L+ L + W+   D 
Sbjct: 698  VGKDNGLNVKELRNMPHLQDGLCISNLENVANVQDARDASLNKKEKLEELTIEWSAGLDD 757

Query: 347  SSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTT 406
            S    A  Q  VLD L+PH NL +  I  YGG +FP W+GD SFS +V +   +C  CT+
Sbjct: 758  S--HNARNQIDVLDSLQPHFNLNKLKIGYYGGPEFPPWIGDVSFSKMVDINLVNCRNCTS 815

Query: 407  LPSVGQLPSLKHLAVRRMSRVRRLGSEFYGND--TPIPFPCLETLRFENLLEWEDWIPHG 464
            LP +G LP LKH+ +  ++ V+ +G EFYG       PFP LE+L F  + +WEDW    
Sbjct: 816  LPCLGWLPMLKHVRIEGLNEVKIVGREFYGETCLPNKPFPSLESLSFSAMSQWEDW---E 872

Query: 465  STQGVEGFPKLRELEVIGCSKLKGTFPEHLPALEMLVIGGCEELLVSITSLPALSKLEIG 524
            S    E +P L  LE+I C KL    P +LP+L  L I  C + +  +  LP+LSKL +G
Sbjct: 873  SPSLSEPYPCLLHLEIINCPKLIKKLPTNLPSLVHLSIDTCPQWVSPLERLPSLSKLRVG 932

Query: 525  GCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRH 584
             C + V RS  + L S   +     +    L       L  L+ L+I      T +W+  
Sbjct: 933  DCNEAVLRSGLE-LPSLTELRIERIVGLTRLHEGCMQLLSGLQVLDIDRCDELTCLWE-- 989

Query: 585  NGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSL 644
            NGF      +++L    CP L SL  E+EK +     L  +L+ L +  C  L KLP  L
Sbjct: 990  NGF----DGIQQLQTSSCPELVSL-GEKEKHK-----LPSKLQSLKILRCNNLEKLPNGL 1039

Query: 645  LSLSSLREIEIYNCSSFVSFPEVALPSKVRSISIHRCDALKSLPEAWMCDANLS------ 698
              L+ L E+EIYNC   VSFPE+  P  +R + I  C+ L+ LP+  M   + S      
Sbjct: 1040 HRLTCLGELEIYNCPKLVSFPELGFPPMLRRLVIVSCEGLRCLPDWMMVMKDGSNNGSDV 1099

Query: 699  --LEILTISRCHSLTYIAEVQLPPSLKNVVIRNCDNVRTLTVEEGIQSSSSRRYTSSLLE 756
              LE L I RC SL    E +LP +LK + I  C+ + +L        S++   TS  L 
Sbjct: 1100 CLLEYLEIDRCPSLIGFPEGELPTTLKQLRIWECEKLESLPGGMMHHDSNTTTATSGGLH 1159

Query: 757  HLHIESCPSLTCIFSKNELLATLESLEVGNLPPSLKSLEVLSCSKLESIAERL--DNNTS 814
             L I  CPSLT                 G  P +LK L++  C++LESI++     NN+S
Sbjct: 1160 VLEIWDCPSLTF-------------FPTGKFPSTLKKLQIWDCAQLESISKETFHSNNSS 1206

Query: 815  LETITIISCKNLKNLP 830
            LE ++I S   LK +P
Sbjct: 1207 LEYLSIRSSPCLKIVP 1222

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450001|ref|XP_002272075.1| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera]

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 351/906 (38%), Positives = 490/906 (54%), Gaps = 106/906 (11%)

Query: 1    DWEGVLSCNIWDLPEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLW 60
            +WE V S  IWDL     DI+PAL +SYY+L + LK+CFAYC++FPK+++FE + ++LLW
Sbjct: 399  EWETVWSSKIWDLLSTESDILPALWLSYYHLPSYLKRCFAYCAMFPKNWKFESQGLVLLW 458

Query: 61   SAVGFLDHRKSENPC-EDLGRKFFQELRARSFFQQSSNNKSLFVMHDLINDLAHWAAGEI 119
             A G +   K      EDLG  +F EL +RSFFQ S+N++S FVMHDLI+DLA   +GEI
Sbjct: 459  MAEGLIQQPKGNGQTMEDLGANYFDELLSRSFFQPSTNDESRFVMHDLIHDLAQVVSGEI 518

Query: 120  YFTMDYTSEVNKQQSFSKNLRHLSCICGKYDGVKRFEDLYNIQHLRTF--LPVCLSNSSQ 177
             F ++Y    N     SK  RH S + G+YD +K+FE     +HLRTF  LP    +  +
Sbjct: 519  CFCLEYNLGSNPLSIISKQTRHSSFVRGRYDAIKKFEAFQEAEHLRTFVALPFLGRSGPK 578

Query: 178  GFLAHSILPKLF-KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNK 236
             F+  ++   L  KLQRLRV  L GY I ELPDSIG+L++LRYLNLS T+I++LP+SV+K
Sbjct: 579  FFVTRTVYDHLVPKLQRLRVLCLSGYLIPELPDSIGELKHLRYLNLSFTRIKSLPDSVSK 638

Query: 237  LYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVV 296
            LYNL T+ L GC   R+L   +GNLI L HLN     +L+EMP  IGKL  LQTL NF+V
Sbjct: 639  LYNLQTIILFGCSNFRRLPPNIGNLINLRHLNVERCLNLDEMPQQIGKLKNLQTLSNFIV 698

Query: 297  GKDSGSRLRELKLLTHLRGTLTISKLEN---------AQLDGKKNLKVLMLRWTNSTDGS 347
            GK     ++ELK L+HLRG + IS+LEN         A L  K N++ L++ W++  D  
Sbjct: 699  GKSRYLGIKELKHLSHLRGKIFISRLENVVNIQDAIDANLRTKLNVEELIMSWSSWFD-- 756

Query: 348  SLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTL 407
            +LR  +T+  VL  L+PH +L++  I  YGG +FP W+ D S+S LV L    C  CT L
Sbjct: 757  NLRNEDTEMEVLLSLQPHTSLKKLDIEAYGGRQFPNWICDPSYSKLVELSIWGCMRCTDL 816

Query: 408  PSVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPI--PFPCLETLRFENLLEWEDWIPHGS 465
            PSVGQLP LK L + RM RV+ +G EF G  +P   PF CLE L F  + +W+ W     
Sbjct: 817  PSVGQLPFLKKLVIERMDRVKSVGLEFEGQVSPYAKPFQCLEYLSFREMKKWKKW----- 871

Query: 466  TQGVEGFPKLRELEVIGCSKLKGTFPEHLPALEMLVIGGCEELLVSI-TSLPALSKLEIG 524
            +   E F +L +L++  C +L    P HL +L  L I  C E +V + T LP+L +L I 
Sbjct: 872  SWSRESFSRLVQLQIKDCPRLSKKLPTHLTSLVRLEINNCPETMVPLPTHLPSLKELNIC 931

Query: 525  GCKKVVWRSETDHLG-------SQNSVVCRDTLNQVLLAGPLK------PRLPKLEELEI 571
             C ++         G       S   +  R       ++G  K        LP+L+ LEI
Sbjct: 932  YCLEMKPSKRLQPFGRLRGGSRSAIDITSRVYFTINGMSGLFKLEQKFLRSLPRLQLLEI 991

Query: 572  SNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLL 631
             +      +W+   G L++++ L+ L    C  L SL  EE +       L C L+YL +
Sbjct: 992  DDSGVLDCLWENGLG-LENLAKLRVLD---CNQLVSLGEEEAQG------LPCNLQYLEI 1041

Query: 632  NDCKGLVKLPQSLLSLSSLREIEIYNCSSFVSFPEVALPSKVRSISIHRCDALKSLPEAW 691
              C  L KLP  L S +SLRE+ I +C+  VSFP+   P  +R ++I  C +L SLP++ 
Sbjct: 1042 RKCDNLEKLPHGLYSYASLRELIIVDCAKLVSFPDKGFPLMLRRLTIANCKSLSSLPDSS 1101

Query: 692  MCDANL-SLEILTISRCHSLTYIAEVQLPPSLKNVVIRNCDNVRTL-------------- 736
             C   +  LE L I +C SL      QLP +LK + I  C N+++L              
Sbjct: 1102 NCSNMVCVLEYLNIYKCPSLICFPIGQLPTTLKELHISYCKNLKSLPEDIEFSALEYVEI 1161

Query: 737  ------------------------------TVEEGIQSSSSRRYTSSLLEHLHIESCPSL 766
                                          ++ EGI    S   T+  L+ LHI  C SL
Sbjct: 1162 WGCSSFIGLPKGKLPPTLKKLTIYGCEKLESLPEGIMHHHSNNTTNCGLQFLHISECSSL 1221

Query: 767  TCIFSKNELLATLESLEVGNLPPSLKSLEVLSCSKLESIAERL--DNNTSLETITIISCK 824
            T             S   G   P+LKS+ +  C++L+ I+E +   NN +LE ++I    
Sbjct: 1222 T-------------SFPRGRFLPTLKSINIYDCAQLQPISEEMFHRNNNALEVLSIWGYP 1268

Query: 825  NLKNLP 830
            NLK +P
Sbjct: 1269 NLKTIP 1274

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|451798992|gb|AGF69194.1| disease resistance protein At3g14460-like protein 1 [Vitis labrusca]

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 344/855 (40%), Positives = 484/855 (56%), Gaps = 58/855 (6%)

Query: 2    WEGVLSCNIWDLPEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWS 61
            W  +L+  IW LP ++C I+PALR+SY +L +PLK+CF+YC++FPKDYEF+++E+I LW 
Sbjct: 400  WNVILTSKIWHLPSDKCSILPALRLSYNHLPSPLKRCFSYCAIFPKDYEFDKKELIRLWM 459

Query: 62   AVGFLDHRKSEN---PCEDLGRKFFQELRARSFFQQSSNNKSLFVMHDLINDLAHWAAGE 118
            A   +   + +      E+LG   FQEL +RSFFQ SS+NKS FVMHDL+NDLA   AGE
Sbjct: 460  AESLIQRLECDGQQIEIENLGDDCFQELLSRSFFQPSSSNKSQFVMHDLVNDLAKSVAGE 519

Query: 119  IYFTMDYTSEVNKQQSFSKNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNS-SQ 177
            + F++    E ++    SK  RH S I G +D  K+FE  Y +++LRTF+ + +  S S 
Sbjct: 520  MCFSLAEKLESSQPHIISKKARHSSFIRGPFDVFKKFEAFYRMEYLRTFIALPIDASWSY 579

Query: 178  GFLAHSILPKLF-KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNK 236
             +L++ +L  L  KL RLRV SL GY ISE+P SIGDL++LRYLNLSGT+++ LP+S+  
Sbjct: 580  RWLSNKVLEGLMPKLWRLRVLSLSGYQISEIPSSIGDLKHLRYLNLSGTRVKWLPDSIGN 639

Query: 237  LYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVV 296
            LYNL TL L  C  L +L   + NL  L HL+ ++T+ LEEMPL I KL  LQ L  F+V
Sbjct: 640  LYNLETLILSYCSKLIRLPLSIENLNNLRHLDVTDTN-LEEMPLRICKLKSLQVLSKFIV 698

Query: 297  GKDSGSRLRELKLLTHLRGTLTISKLEN---------AQLDGKKNLKVLMLRWTNSTDGS 347
            GKD+G  ++EL+ + HL+G L IS LEN         A L+ K+ L+ L + W+   D S
Sbjct: 699  GKDNGLNVKELRNMPHLQGELCISNLENVANVQDARDASLNKKQKLEELTIEWSAGLDDS 758

Query: 348  SLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTL 407
                A  Q  VL  L+PH NL +  I  YGG +FP W+GD SFS +V +   +C  CT+L
Sbjct: 759  --HNARNQIDVLGSLQPHFNLNKLKIENYGGPEFPPWIGDVSFSKMVDVNLVNCRNCTSL 816

Query: 408  PSVGQLPSLKHLAVRRMSRVRRLGSEFYGND--TPIPFPCLETLRFENLLEWEDWIPHGS 465
            P +G LP LKH+ +  +  V+ +G EFYG       PFP LE+L F ++ +WEDW    S
Sbjct: 817  PCLGWLPMLKHVRIEGLKEVKIVGREFYGETCLPNKPFPSLESLSFSDMSQWEDW---ES 873

Query: 466  TQGVEGFPKLRELEVIGCSKLKGTFPEHLPALEMLVIGGCEELLVSITSLPALSKLEIGG 525
                E +P L  L+++ C KL    P +LP+L  L I GC + +  +  L +LSKL +  
Sbjct: 874  PTLSEPYPCLLHLKIVDCPKLIKKLPTNLPSLVHLSILGCPQWVPPLERLSSLSKLRVKD 933

Query: 526  CKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRHN 585
            C + V RS  + L S   +     +    L       L  L+ L+I      T +W+  N
Sbjct: 934  CNEAVLRSGLE-LPSLTELRIERIVGLTRLHEGCMQLLSGLQVLDICGCDELTCLWE--N 990

Query: 586  GFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSLL 645
            GF      +++L    CP L SL  E+EK      E+  +L+ L ++ C  L KLP  L 
Sbjct: 991  GF----DGIQQLQTSSCPELVSL-GEKEKH-----EMPSKLQSLTISGCNNLEKLPNGLH 1040

Query: 646  SLSSLREIEIYNCSSFVSFPEVALPSKVRSISIHRCDALKSLPEAWMCDANLS------- 698
             L+ L E+EIY C   VSFPE+  P  +R + I  C+ L+ LP+  M   + S       
Sbjct: 1041 RLTCLGELEIYGCPKLVSFPELGFPPMLRRLVIVGCEGLRCLPDWMMVMKDGSNNGSDVC 1100

Query: 699  -LEILTISRCHSLTYIAEVQLPPSLKNVVIRNCDNVRTLTVEEGIQSSSSRRYTSSLLEH 757
             LE L I  C SL    E +LP +LK + I  C+ + +L        S++   TS  L  
Sbjct: 1101 LLEYLKIDTCPSLIGFPEGELPTTLKQLRIWECEKLESLPGGMMHHDSNTTTATSGGLHV 1160

Query: 758  LHIESCPSLTCIFSKNELLATLESLEVGNLPPSLKSLEVLSCSKLESIAERL--DNNTSL 815
            L I  CPSLT                 G  P +L+ LE+  C++LESI+E +   NN+SL
Sbjct: 1161 LDIWDCPSLTF-------------FPTGKFPSTLQKLEIWDCAQLESISEEMFHSNNSSL 1207

Query: 816  ETITIISCKNLKNLP 830
            E ++I S   LK +P
Sbjct: 1208 EYLSISSYPCLKIVP 1222

Source: Vitis labrusca

Species: Vitis labrusca

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487416|ref|XP_002272889.2| PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]

 Score =  543 bits (1400), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 344/855 (40%), Positives = 484/855 (56%), Gaps = 58/855 (6%)

Query: 2    WEGVLSCNIWDLPEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWS 61
            W  +L+  IW LP ++C I+PALR+SY +L +PLK+CF+YC++FPKDYEF+++E+I LW 
Sbjct: 400  WNVILTSKIWHLPSDKCSILPALRLSYNHLPSPLKRCFSYCAIFPKDYEFDKKELIRLWM 459

Query: 62   AVGFLDHRKSEN---PCEDLGRKFFQELRARSFFQQSSNNKSLFVMHDLINDLAHWAAGE 118
            A   +   + +      E+LG   FQEL +RSFFQ SS+NKS FVMHDL+NDLA   AGE
Sbjct: 460  AESLIQRLECDGQQIEIENLGDDCFQELLSRSFFQPSSSNKSQFVMHDLVNDLAKSVAGE 519

Query: 119  IYFTMDYTSEVNKQQSFSKNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNS-SQ 177
            + F++    E ++    SK  RH S I G +D  K+FE  Y +++LRTF+ + +  S S 
Sbjct: 520  MCFSLAEKLESSQPHIISKKARHSSFIRGPFDVFKKFEAFYRMEYLRTFIALPIDASWSY 579

Query: 178  GFLAHSILPKLF-KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNK 236
             +L++ +L  L  KL RLRV SL GY ISE+P SIGDL++LRYLNLSGT+++ LP+S+  
Sbjct: 580  RWLSNKVLEGLMPKLWRLRVLSLSGYQISEIPSSIGDLKHLRYLNLSGTRVKWLPDSIGN 639

Query: 237  LYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVV 296
            LYNL TL L  C  L +L   + NL  L HL+ ++T+ LEEMPL I KL  LQ L  F+V
Sbjct: 640  LYNLETLILSYCSKLIRLPLSIENLNNLRHLDVTDTN-LEEMPLRICKLKSLQVLSKFIV 698

Query: 297  GKDSGSRLRELKLLTHLRGTLTISKLEN---------AQLDGKKNLKVLMLRWTNSTDGS 347
            GKD+G  ++EL+ + HL+G L IS LEN         A L+ K+ L+ L + W+   D S
Sbjct: 699  GKDNGLNVKELRNMPHLQGELCISNLENVANVQDARDASLNKKQKLEELTIEWSAGLDDS 758

Query: 348  SLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTL 407
                A  Q  VL  L+PH NL +  I  YGG +FP W+GD SFS +V +   +C  CT+L
Sbjct: 759  --HNARNQIDVLGSLQPHFNLNKLKIENYGGPEFPPWIGDVSFSKMVDVNLVNCRNCTSL 816

Query: 408  PSVGQLPSLKHLAVRRMSRVRRLGSEFYGND--TPIPFPCLETLRFENLLEWEDWIPHGS 465
            P +G LP LKH+ +  +  V+ +G EFYG       PFP LE+L F ++ +WEDW    S
Sbjct: 817  PCLGWLPMLKHVRIEGLKEVKIVGREFYGETCLPNKPFPSLESLSFSDMSQWEDW---ES 873

Query: 466  TQGVEGFPKLRELEVIGCSKLKGTFPEHLPALEMLVIGGCEELLVSITSLPALSKLEIGG 525
                E +P L  L+++ C KL    P +LP+L  L I GC + +  +  L +LSKL +  
Sbjct: 874  PTLSEPYPCLLHLKIVDCPKLIKKLPTNLPSLVHLSILGCPQWVPPLERLSSLSKLRVKD 933

Query: 526  CKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRHN 585
            C + V RS  + L S   +     +    L       L  L+ L+I      T +W+  N
Sbjct: 934  CNEAVLRSGLE-LPSLTELRIERIVGLTRLHEGCMQLLSGLQVLDICGCDELTCLWE--N 990

Query: 586  GFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSLL 645
            GF      +++L    CP L SL  E+EK      E+  +L+ L ++ C  L KLP  L 
Sbjct: 991  GF----DGIQQLQTSSCPELVSL-GEKEKH-----EMPSKLQSLTISGCNNLEKLPNGLH 1040

Query: 646  SLSSLREIEIYNCSSFVSFPEVALPSKVRSISIHRCDALKSLPEAWMCDANLS------- 698
             L+ L E+EIY C   VSFPE+  P  +R + I  C+ L+ LP+  M   + S       
Sbjct: 1041 RLTCLGELEIYGCPKLVSFPELGFPPMLRRLVIVGCEGLRCLPDWMMVMKDGSNNGSDVC 1100

Query: 699  -LEILTISRCHSLTYIAEVQLPPSLKNVVIRNCDNVRTLTVEEGIQSSSSRRYTSSLLEH 757
             LE L I  C SL    E +LP +LK + I  C+ + +L        S++   TS  L  
Sbjct: 1101 LLEYLKIDTCPSLIGFPEGELPTTLKQLRIWECEKLESLPGGMMHHDSNTTTATSGGLHV 1160

Query: 758  LHIESCPSLTCIFSKNELLATLESLEVGNLPPSLKSLEVLSCSKLESIAERL--DNNTSL 815
            L I  CPSLT                 G  P +L+ LE+  C++LESI+E +   NN+SL
Sbjct: 1161 LDIWDCPSLTF-------------FPTGKFPSTLQKLEIWDCAQLESISEEMFHSNNSSL 1207

Query: 816  ETITIISCKNLKNLP 830
            E ++I S   LK +P
Sbjct: 1208 EYLSISSYPCLKIVP 1222

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	831
TAIR|locus:2091672	1054	AT3G14470 [Arabidopsis thalian	0.596	0.470	0.402	2.5e-100
TAIR|locus:2091662	1424	AT3G14460 [Arabidopsis thalian	0.583	0.340	0.401	5.1e-97
UNIPROTKB|O48647	1802	O48647 "XA1" [Oryza sativa (ta	0.375	0.173	0.329	2.3e-35
TAIR|locus:504956182	1049	AT1G58848 [Arabidopsis thalian	0.578	0.458	0.278	4.9e-21
TAIR|locus:2826978	1049	AT1G59218 [Arabidopsis thalian	0.578	0.458	0.278	4.9e-21
TAIR|locus:2078012	852	ZAR1 "HOPZ-ACTIVATED RESISTANC	0.417	0.407	0.290	4.3e-20
TAIR|locus:2171579	843	AT5G47250 [Arabidopsis thalian	0.505	0.498	0.280	8.2e-19
TAIR|locus:2131689	919	AT4G27220 [Arabidopsis thalian	0.318	0.288	0.284	5.6e-18
TAIR|locus:2201986	885	RFL1 "AT1G12210" [Arabidopsis	0.316	0.297	0.294	9e-18
TAIR|locus:2034770	894	SUMM2 "AT1G12280" [Arabidopsis	0.511	0.475	0.264	9.3e-18

TAIR|locus:2091672 AT3G14470 [Arabidopsis thaliana (taxid:3702)]

 Score = 955 (341.2 bits), Expect = 2.5e-100, Sum P(2) = 2.5e-100
 Identities = 212/527 (40%), Positives = 315/527 (59%)

Query:     1 DWEGVLSCNIWDLPEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLW 60
             +WE VLS  IWDLP ++ +++P LRVSYYYL A LK+CFAYCS+FPK + FE+++++LLW
Sbjct:   392 EWERVLSSRIWDLPADKSNLLPVLRVSYYYLPAHLKRCFAYCSIFPKGHAFEKDKVVLLW 451

Query:    61 SAVGFLDHRKSENPCEDLGRKFFQELRARSFFQQSSNNKSLFVMHDLINDLAHWAAGEIY 120
              A GFL   +S    E+LG ++F EL +RS  Q++   K+ ++MHD IN+LA +A+GE  
Sbjct:   452 MAEGFLQQTRSSKNLEELGNEYFSELESRSLLQKT---KTRYIMHDFINELAQFASGE-- 506

Query:   121 FTMDYTSEVNKQQSFSKNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGF- 179
             F+  +      Q   S+  R+LS +   Y     FE L  ++ LRTFLP+ L+NSS+   
Sbjct:   507 FSSKFEDGCKLQ--VSERTRYLSYLRDNYAEPMEFEALREVKFLRTFLPLSLTNSSRSCC 564

Query:   180 LAHSILPKLFK-LQRLRVFSLCGYWISELP-DSIGDLRYLRYLNLSGTQIRTLPESVNKL 237
             L   +  KL   L RLRV SL  Y I+ LP D   ++ + R+L+LS T++  LP+S+  +
Sbjct:   565 LDQMVSEKLLPTLTRLRVLSLSHYKIARLPPDFFKNISHARFLDLSRTELEKLPKSLCYM 624

Query:   238 YNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVG 297
             YNL TL L  C  L++L   + NLI L +L+   T  L +MP   G+L  LQTL  F V 
Sbjct:   625 YNLQTLLLSYCSSLKELPTDISNLINLRYLDLIGT-KLRQMPRRFGRLKSLQTLTTFFVS 683

Query:   298 KDSGSRLRELKLLTHLRGTLTISKLEN---------AQLDGKKNLKVLMLRW----TNST 344
                GSR+ EL  L  L G L I +L+          A L+ KK+L+ +   W    ++S 
Sbjct:   684 ASDGSRISELGGLHDLHGKLKIVELQRVVDVADAAEANLNSKKHLREIDFVWRTGSSSSE 743

Query:   345 DGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMC 404
             + ++    + +  V + L+PH+++E+  I  Y G +FP WL D SFS +V ++  +C  C
Sbjct:   744 NNTNPHRTQNEAEVFEKLRPHRHIEKLAIERYKGRRFPDWLSDPSFSRIVCIRLRECQYC 803

Query:   405 TTLPSVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPI------PFPCLETLRFENLLEWE 458
             T+LPS+GQLP LK L +  M  ++ +G +FY +D  +      PF  LETLRF+NL +W+
Sbjct:   804 TSLPSLGQLPCLKELHISGMVGLQSIGRKFYFSDQQLRDQDQQPFRSLETLRFDNLPDWQ 863

Query:   459 DWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPEHLPALEMLVIGGC 505
             +W+    T+G + FP L++L ++ C +L GT P  LP+L  L I  C
Sbjct:   864 EWLDVRVTRG-DLFPSLKKLFILRCPELTGTLPTFLPSLISLHIYKC 909

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)]

 Score = 848 (303.6 bits), Expect = 5.1e-97, Sum P(2) = 5.1e-97
 Identities = 205/510 (40%), Positives = 281/510 (55%)

Query:    20 IIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWSAVGFLDHRKSENPCEDLG 79
             I+P L++SY  L   LK+CFA CS+FPK + F+ EE++LLW A+  L   +S    ED+G
Sbjct:   403 ILPVLKLSYDSLPPQLKRCFALCSIFPKGHVFDREELVLLWMAIDLLYQPRSSRRLEDIG 462

Query:    80 RKFFQELRARSFFQQSSNNKSLFVMHDLINDLAHWAAGEIYFTMDYTSEVNKQQSFSKNL 139
               +  +L A+SFFQ+     + FVMHDL+NDLA   +G+  F +    E +         
Sbjct:   463 NDYLGDLVAQSFFQRLDITMTSFVMHDLMNDLAKAVSGDFCFRL----EDDNIPEIPSTT 518

Query:   140 RHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGF-LAHSIL-PKLFKLQRLRVF 197
             RH S    + D    F  +   + LRT LP     S +   L   +L P L  L  LR+ 
Sbjct:   519 RHFSFSRSQCDASVAFRSICGAEFLRTILPFNSPTSLESLQLTEKVLNPLLNALSGLRIL 578

Query:   198 SLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAG 257
             SL  Y I+ LP S+  L+ LRYL+LS T+I+ LPE V  L NL TL L  CR L  L   
Sbjct:   579 SLSHYQITNLPKSLKGLKLLRYLDLSSTKIKELPEFVCTLCNLQTLLLSNCRDLTSLPKS 638

Query:   258 MGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTL 317
             +  LI L  L+   T  L EMP GI KL  LQ L NFV+G+ SG+ L ELK L+HLRGTL
Sbjct:   639 IAELINLRLLDLVGTP-LVEMPPGIKKLRSLQKLSNFVIGRLSGAGLHELKELSHLRGTL 697

Query:   318 TISKLEN---------AQLDGKKNLKVLMLRWT----NSTDGSSLREAETQKGVLDMLKP 364
              IS+L+N         A L  K  L  L+L+WT        GS    A  QK VL ML+P
Sbjct:   698 RISELQNVAFASEAKDAGLKRKPFLDGLILKWTVKGSGFVPGSFNALACDQKEVLRMLEP 757

Query:   365 HKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHLAVRRM 424
             H +L+ F I  Y G  FP WLGDSSF  + ++    C +C +LP VGQLPSLK+L++ + 
Sbjct:   758 HPHLKTFCIESYQGGAFPKWLGDSSFFGITSVTLSSCNLCISLPPVGQLPSLKYLSIEKF 817

Query:   425 SRVRRLGSEFY---GNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVI 481
             + ++++G +F+    N   +PF  L+ L+F  +  W++WI      G+  FP L++L + 
Sbjct:   818 NILQKVGLDFFFGENNSRGVPFQSLQILKFYGMPRWDEWICPELEDGI--FPCLQKLIIQ 875

Query:   482 GCSKLKGTFPEHLPALEMLVIGGCEELLVS 511
              C  L+  FPE LP+   + I  C    VS
Sbjct:   876 RCPSLRKKFPEGLPSSTEVTISDCPLRAVS 905

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

UNIPROTKB|O48647 O48647 "XA1" [Oryza sativa (taxid:4530)]

 Score = 366 (133.9 bits), Expect = 2.3e-35, Sum P(2) = 2.3e-35
 Identities = 114/346 (32%), Positives = 174/346 (50%)

Query:     2 WEGVLSCNIWDLPEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWS 61
             W+ ++    W   ++   I+ AL++SY +LS PL+QC +YCSLFPK Y F + ++I +W 
Sbjct:   524 WDSIIKSEEWKSLQQAYGIMQALKLSYDHLSNPLQQCVSYCSLFPKGYSFSKAQLIQIWI 583

Query:    62 AVGFLDHRKSENPCEDLGRKFFQELRARSFFQQSSNNK---SLFVMHDLINDLAHWAAGE 118
             A GF++  +S    E  G K+  EL    F QQ  + +     FVMHDL++DLA   +  
Sbjct:   584 AQGFVE--ESSEKLEQKGWKYLAELVNSGFLQQVESTRFSSEYFVMHDLMHDLAQKVSQT 641

Query:   119 IYFTMDYTSEVNKQQSFSKNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQG 178
              Y T+D  SE  +    + ++RHLS +    D   R E   NI     F    +   S+ 
Sbjct:   642 EYATID-GSECTE---LAPSIRHLSIVT---DSAYRKEKYRNISRNEVFEKRLMKVKSRS 694

Query:   179 FLAHSILP--------KLFK-----LQRLRVFSLCG-YWISE-LPDSIGDLRYLRYLNLS 223
              L   +L         K FK      Q LR+  +   Y  S+    S+ +  +LRYL + 
Sbjct:   695 KLRSLVLIGQYDSHFFKYFKDAFKEAQHLRLLQITATYADSDSFLSSLVNSTHLRYLKIV 754

Query:   224 GTQI-RTLPESVNKLYNLHTLSLEGCR-GLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLG 281
               +  RTLP S+ K Y+L  L + G R G+ ++   + NL+ L HL     D +      
Sbjct:   755 TEESGRTLPRSLRKYYHLQVLDI-GYRFGIPRISNDINNLLSLRHL--VAYDEVCSSIAN 811

Query:   282 IGKLTCLQTLCNFVVGKD-SGSRLRELKLLTHLRGTLTISKLENAQ 326
             IGK+T LQ L NF+V  + SG  + +LK +  L   L++S+LEN +
Sbjct:   812 IGKMTSLQELGNFIVQNNLSGFEVTQLKSMNKLV-QLSVSQLENVR 856

GO:0006915 "apoptotic process" evidence=IGI

GO:0006952 "defense response" evidence=IGI

TAIR|locus:504956182 AT1G58848 [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 4.9e-21, Sum P(2) = 4.9e-21
 Identities = 150/539 (27%), Positives = 231/539 (42%)

Query:     9 NIWDLPEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWSAVGFLDH 68
             N  D     C+ +  L +S+  L + LK CF Y + FP DYE   + +   W+A G    
Sbjct:   400 NFNDDNNNTCNYV--LSLSFEELPSYLKHCFLYLAHFPDDYEINVKNLSYYWAAEGIFQP 457

Query:    69 RKSENPC-EDLGRKFFQELRARSFFQQSSNNK-SLFV---MHDLINDLAHWAAGEIYFTM 123
             R  +     D+G  + +EL  R+      + K S F    +HD++ ++    A E  F  
Sbjct:   458 RHYDGEIIRDVGDVYIEELVRRNMVISERDVKTSRFETCHLHDMMREVCLLKAKEENFLQ 517

Query:   124 DYTSEVNKQQSFS-KNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAH 182
               +S  +   S S    R L     +Y      E   N   LR+ + V  +    G  + 
Sbjct:   518 ITSSRTSTGNSLSIVTSRRLVY---QYPITLDVEKDINDPKLRSLVVVANTYMFWGGWSW 574

Query:   183 SILPKLF-KLQRLRVFSLCGYWIS--ELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYN 239
              +L   F +L+ LRV  +    +   +L  SIG L +LRYLNL   ++  +P S+  L  
Sbjct:   575 MLLGSSFIRLELLRVLDIHRAKLKGGKLASSIGQLIHLRYLNLKHAEVTHIPYSLGNLKL 634

Query:   240 LHTLSLEGCRGLRKLCAG-MGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGK 298
             L  L+L        L    +  + +L +L     D   +  L +  L  L+TL NF    
Sbjct:   635 LIYLNLVILVSGSTLVPNVLKEMQQLRYLALPK-DMGRKTKLELSNLVKLETLKNFSTKN 693

Query:   299 DSGSRLRELKLLTHLRGTLTI-----SKLEN--AQLDGKKNLKVLMLRWTNSTD-GSSLR 350
              S   L +L+ +  LR TLTI     + LE   A + G K L+ L +     TD GS +R
Sbjct:   694 CS---LEDLRGMVRLR-TLTIELRKETSLETLAASIGGLKYLESLTI-----TDLGSEMR 744

Query:   351 EAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSF-SNLVTLKFEDCGMCTT-LP 408
               E    V D +     L+   +  Y     P    +  F S+L TL  + C +    +P
Sbjct:   745 TKEAGI-VFDFVY----LKTLTLKLY----MPRLSKEQHFPSHLTTLYLQHCRLEEDPMP 795

Query:   409 SVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQG 468
              + +L  LK L +RR S     G E   +     FP L+ L  + L EWEDW    S+  
Sbjct:   796 ILEKLHQLKELELRRKSFS---GKEMVCSSGG--FPQLQKLSIKGLEEWEDWKVEESSM- 849

Query:   469 VEGFPKLRELEVIGCSKLKGTFPEHLPA-LEMLVIGGC---EELLVSITSLPALSKLEI 523
                 P L  L++  C KLK    EHLP+ L  + +  C   E+ + ++  L  L +L++
Sbjct:   850 ----PVLHTLDIRDCRKLKQLPDEHLPSHLTSISLFFCCLEEDPMPTLERLVHLKELQL 904

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2826978 AT1G59218 [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 4.9e-21, Sum P(2) = 4.9e-21
 Identities = 150/539 (27%), Positives = 231/539 (42%)

Query:     9 NIWDLPEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWSAVGFLDH 68
             N  D     C+ +  L +S+  L + LK CF Y + FP DYE   + +   W+A G    
Sbjct:   400 NFNDDNNNTCNYV--LSLSFEELPSYLKHCFLYLAHFPDDYEINVKNLSYYWAAEGIFQP 457

Query:    69 RKSENPC-EDLGRKFFQELRARSFFQQSSNNK-SLFV---MHDLINDLAHWAAGEIYFTM 123
             R  +     D+G  + +EL  R+      + K S F    +HD++ ++    A E  F  
Sbjct:   458 RHYDGEIIRDVGDVYIEELVRRNMVISERDVKTSRFETCHLHDMMREVCLLKAKEENFLQ 517

Query:   124 DYTSEVNKQQSFS-KNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAH 182
               +S  +   S S    R L     +Y      E   N   LR+ + V  +    G  + 
Sbjct:   518 ITSSRTSTGNSLSIVTSRRLVY---QYPITLDVEKDINDPKLRSLVVVANTYMFWGGWSW 574

Query:   183 SILPKLF-KLQRLRVFSLCGYWIS--ELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYN 239
              +L   F +L+ LRV  +    +   +L  SIG L +LRYLNL   ++  +P S+  L  
Sbjct:   575 MLLGSSFIRLELLRVLDIHRAKLKGGKLASSIGQLIHLRYLNLKHAEVTHIPYSLGNLKL 634

Query:   240 LHTLSLEGCRGLRKLCAG-MGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGK 298
             L  L+L        L    +  + +L +L     D   +  L +  L  L+TL NF    
Sbjct:   635 LIYLNLVILVSGSTLVPNVLKEMQQLRYLALPK-DMGRKTKLELSNLVKLETLKNFSTKN 693

Query:   299 DSGSRLRELKLLTHLRGTLTI-----SKLEN--AQLDGKKNLKVLMLRWTNSTD-GSSLR 350
              S   L +L+ +  LR TLTI     + LE   A + G K L+ L +     TD GS +R
Sbjct:   694 CS---LEDLRGMVRLR-TLTIELRKETSLETLAASIGGLKYLESLTI-----TDLGSEMR 744

Query:   351 EAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSF-SNLVTLKFEDCGMCTT-LP 408
               E    V D +     L+   +  Y     P    +  F S+L TL  + C +    +P
Sbjct:   745 TKEAGI-VFDFVY----LKTLTLKLY----MPRLSKEQHFPSHLTTLYLQHCRLEEDPMP 795

Query:   409 SVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQG 468
              + +L  LK L +RR S     G E   +     FP L+ L  + L EWEDW    S+  
Sbjct:   796 ILEKLHQLKELELRRKSFS---GKEMVCSSGG--FPQLQKLSIKGLEEWEDWKVEESSM- 849

Query:   469 VEGFPKLRELEVIGCSKLKGTFPEHLPA-LEMLVIGGC---EELLVSITSLPALSKLEI 523
                 P L  L++  C KLK    EHLP+ L  + +  C   E+ + ++  L  L +L++
Sbjct:   850 ----PVLHTLDIRDCRKLKQLPDEHLPSHLTSISLFFCCLEEDPMPTLERLVHLKELQL 904

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2078012 ZAR1 "HOPZ-ACTIVATED RESISTANCE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 4.3e-20, Sum P(2) = 4.3e-20
 Identities = 112/386 (29%), Positives = 175/386 (45%)

Query:    16 ERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWSAVGFLDHRKSENPC 75
             E  +++ +L++SY  L + LK C    SL+P+D    +++++  W   GF+  R   +  
Sbjct:   396 ETDNVMSSLQLSYDELPSHLKSCILTLSLYPEDCVIPKQQLVHGWIGEGFVMWRNGRSAT 455

Query:    76 EDLGRKFFQELRARSFFQQSSNNKSLFVMHDLINDLAHWAAGEIYFTMDYTSEVNKQQSF 135
             E  G   F  L  R   +      S  ++   I+D+            D   ++ K+ SF
Sbjct:   456 ES-GEDCFSGLTNRCLIEVVDKTYSGTIITCKIHDMVR----------DLVIDIAKKDSF 504

Query:   136 SK----NLRHLSCICGKYDGVKRFEDLYNIQH-LRTFLPVCLSNSSQGFLAHSILPKLFK 190
             S     N RHL  I G +D     E    + H LR    V  + + +    +S L K F 
Sbjct:   505 SNPEGLNCRHLG-ISGNFD-----EKQIKVNHKLRGV--VSTTKTGEVNKLNSDLAKKFT 556

Query:   191 -LQRLRVF----SLCGYWISELPDSIGDLRYLRYLNLSGTQ-IRTLPESVNKLYNLHTLS 244
               + LRV     S+    +SE+ D I  L++L  L+LS T  +   P S+  L+NL  L 
Sbjct:   557 DCKYLRVLDISKSIFDAPLSEILDEIASLQHLACLSLSNTHPLIQFPRSMEDLHNLQILD 616

Query:   245 LEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGK-DSGSR 303
                C+ L++L   +    KL  L+ +N  SLE  P GIG L  L+ L  F   + ++G +
Sbjct:   617 ASYCQNLKQLQPCIVLFKKLLVLDMTNCGSLECFPKGIGSLVKLEVLLGFKPARSNNGCK 676

Query:   304 LRELKLLTHLRGT-LTISK---LENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVL 359
             L E+K LT+LR   L++++   +E  +LD   NL  LM    N  D  S  +    K  +
Sbjct:   677 LSEVKNLTNLRKLGLSLTRGDQIEEEELDSLINLSKLMSISINCYD--SYGDDLITK--I 732

Query:   360 DMLKPHKNLEQFFISGYGGTKFPIWL 385
             D L P   L +  +  Y G   P WL
Sbjct:   733 DALTPPHQLHELSLQFYPGKSSPSWL 758

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2171579 AT5G47250 [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 8.2e-19, P = 8.2e-19
 Identities = 129/460 (28%), Positives = 192/460 (41%)

Query:    20 IIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWSAVGFLDHRKSENPCEDLG 79
             I   L++SY YL     +CF YC+LFPK Y  +++E++  W   GF+D +      +D G
Sbjct:   389 IFQVLKLSYDYLKTKNAKCFLYCALFPKAYYIKQDELVEYWIGEGFIDEKDGRERAKDRG 448

Query:    80 RKFFQELRARSFFQQSSNNKSLFVMHDLINDLAHWAAGEIYFTMDYTSEVNKQQSFSKNL 139
              +    L       +S  NK ++ MHD+I D+A W   E      Y  + +   S   ++
Sbjct:   449 YEIIDNLVGAGLLLES--NKKVY-MHDMIRDMALWIVSEFRDGERYVVKTDAGLSQLPDV 505

Query:   140 RHLSCIC--GKYDG-VKRFEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFK-LQRLR 195
                + +     ++  +K   D          + + L N+    L   I+ K F  +  L 
Sbjct:   506 TDWTTVTKMSLFNNEIKNIPDDPEFPDQTNLVTLFLQNNR---LV-DIVGKFFLVMSTLV 561

Query:   196 VFSLC-GYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKL 254
             V  L   + I+ELP  I  L  LR LNLSGT I+ LPE +  L  L  L+LE    LR +
Sbjct:   562 VLDLSWNFQITELPKGISALVSLRLLNLSGTSIKHLPEGLGVLSKLIHLNLESTSNLRSV 621

Query:   255 CAGMGNLIKLHHLN-NSNTDSLEEMPLGI-GKLTCLQTLCNFVVGKDS------GS-RLR 305
                +  L KL  L    +  +L+   L I  +L  LQ L    V  DS      GS RL 
Sbjct:   622 GL-ISELQKLQVLRFYGSAAALDCCLLKILEQLKGLQLL-TVTVNNDSVLEEFLGSTRLA 679

Query:   306 ELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNS-TDGSSLREAE----TQKGVLD 360
              +    +L G L +S      L     L+++    T S T+    R  +    T    + 
Sbjct:   680 GMTQGIYLEG-LKVSFAAIGTLSSLHKLEMVNCDITESGTEWEGKRRDQYSPSTSSSEIT 738

Query:   361 MLKP-HKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTL------PSVGQL 413
                P  K+L    I+     K   WL  ++  NL +L  E     T L        VG  
Sbjct:   739 PSNPWFKDLSAVVINSCIHLKDLTWLMYAA--NLESLSVESSPKMTELINKEKAQGVGVD 796

Query:   414 PSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFEN 453
             P  + L V R+  ++ LGS  YG+    P   L  +  EN
Sbjct:   797 P-FQELQVLRLHYLKELGS-IYGSQVSFPKLKLNKVDIEN 834

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2131689 AT4G27220 [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 5.6e-18, Sum P(2) = 5.6e-18
 Identities = 81/285 (28%), Positives = 137/285 (48%)

Query:    15 EERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWSAVGFLDHRKSENP 74
             EE+  I   L++SY +L   +K CF +C+LFP+DY  +  E+I+ W A G LD +     
Sbjct:   345 EEK--IFGTLKLSYDFLQDNMKSCFLFCALFPEDYSIKVSELIMYWVAEGLLDGQHHYED 402

Query:    75 CEDLGRKFFQELRARSFFQQSSNNKSLFVMHDLINDLAHW---AAGEIYFTMDYTSE--V 129
               + G    + L+     +   +  ++  MHD++ D A W   + GE + ++       +
Sbjct:   403 MMNEGVTLVERLKDSCLLEDGDSCDTV-KMHDVVRDFAIWFMSSQGEGFHSLVMAGRGLI 461

Query:   130 N-KQQSFSKNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKL 188
                Q  F  +++ +S +  K   ++R  +   I+ + T + +   NS    + +  L + 
Sbjct:   462 EFPQDKFVSSVQRVSLMANK---LERLPNNV-IEGVETLVLLLQGNSHVKEVPNGFL-QA 516

Query:   189 FKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQ-IRTLPESVNKLYNLHTLSLEG 247
             F    LR+  L G  I  LPDS  +L  LR L L   + +R LP S+  L  L  L L  
Sbjct:   517 FP--NLRILDLSGVRIRTLPDSFSNLHSLRSLVLRNCKKLRNLP-SLESLVKLQFLDLHE 573

Query:   248 CRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLG-IGKLTCLQTL 291
                +R+L  G+  L  L ++  SNT  L+ +P G I +L+ L+ L
Sbjct:   574 S-AIRELPRGLEALSSLRYICVSNTYQLQSIPAGTILQLSSLEVL 617

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2201986 RFL1 "AT1G12210" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 9.0e-18, Sum P(2) = 9.0e-18
 Identities = 83/282 (29%), Positives = 131/282 (46%)

Query:    19 DIIPALRVSYYYLSAP-LKQCFAYCSLFPKDYEFEEEEIILLWSAVGFLDHRKSENPCED 77
             +I+P L+ SY  L+    K CF YCSLFP+D+E  +E +I  W   GF+  ++      +
Sbjct:   390 EILPILKYSYDSLNGEDAKSCFLYCSLFPEDFEIRKEMLIEYWICEGFIKEKQGREKAFN 449

Query:    78 LGRKFFQELRARSFFQQSSNNKSLFVMHDLINDLAHWAAGEIYFTMDYTSEVNKQQSFSK 137
              G      L   S   + + +K +  MHD++ ++A W    I+  +    E    Q+   
Sbjct:   450 QGYDILGTLVRSSLLLEGAKDKDVVSMHDMVREMALW----IFSDLGKHKERCIVQA-GI 504

Query:   138 NLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAHS-----ILPKLFK-L 191
              L  L  +   +  VKR   + N        P C+   +  FL ++     I  + F+ +
Sbjct:   505 GLDELPEV-ENWRAVKRMSLMNNNFEKILGSPECVELITL-FLQNNYKLVDISMEFFRCM 562

Query:   192 QRLRVFSLC-GYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRG 250
               L V  L   + +SELP+ I +L  L+YL+LSGT I  LP  +++L  L  L LE  R 
Sbjct:   563 PSLAVLDLSENHSLSELPEEISELVSLQYLDLSGTYIERLPHGLHELRKLVHLKLERTRR 622

Query:   251 LRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGK-LTCLQTL 291
             L  + +G+  L  L  L     DS   +  G+ K L  L+ L
Sbjct:   623 LESI-SGISYLSSLRTLRLR--DSKTTLDTGLMKELQLLEHL 661

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2034770 SUMM2 "AT1G12280" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 9.3e-18, Sum P(2) = 9.3e-18
 Identities = 125/473 (26%), Positives = 200/473 (42%)

Query:     5 VLSCNIWDLPEERCDIIPALRVSYYYLSAP-LKQCFAYCSLFPKDYEFEEEEIILLWSAV 63
             VLS    + P     I+P L+ SY  L+   +K CF YCSLFP+DY  E+E +I  W   
Sbjct:   377 VLSSYAAEFPGME-QILPILKYSYDNLNKEQVKPCFLYCSLFPEDYRMEKERLIDYWICE 435

Query:    64 GFLDHRKSENPCEDLGRKFFQELRARSFFQQSSNNKSLFVMHDLINDLAHWAAGEIYFTM 123
             GF+D  +S       G +    L       + + NK    MHD++ ++A W A ++    
Sbjct:   436 GFIDENESRERALSQGYEIIGILVRACLLLEEAINKEQVKMHDVVREMALWIASDLG--- 492

Query:   124 DYTSEVNKQQSFSKNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSS-----QG 178
             ++      Q      LR +  +   +  V+R   + N   + +  P CL  ++       
Sbjct:   493 EHKERCIVQVGVG--LREVPKV-KNWSSVRRMSLMENEIEILSGSPECLELTTLFLQKND 549

Query:   179 FLAHSILPKLFK-LQRLRVFSLCGYW-ISELPDSIGDLRYLRYLNLSGTQIRTLPESVNK 236
              L H I  + F+ +  L V  L G   + +LP+ I  L  LRYL+LS T I+ LP  + +
Sbjct:   550 SLLH-ISDEFFRCIPMLVVLDLSGNSSLRKLPNQISKLVSLRYLDLSWTYIKRLPVGLQE 608

Query:   237 LYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVV 296
             L  L  L L+  + L+ + +G+ N+  L  L    +    +M L + +L  L+ L    +
Sbjct:   609 LKKLRYLRLDYMKRLKSI-SGISNISSLRKLQLLQSKMSLDMSL-VEELQLLEHLEVLNI 666

Query:   297 GKDSGSRLRELKLLTHLRGTLTISKLENAQ--------LDGKKNLKVLMLRWTN----ST 344
                S   + +L     L   L I  L   Q        L    NL  +++R         
Sbjct:   667 SIKSSLVVEKLLNAPRLVKCLQILVLRGVQEESSGVLTLPDMDNLNKVIIRKCGMCEIKI 726

Query:   345 DGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFS-NLVTLKFEDC-- 401
             +  +L  +  +      L  H NL    IS   G K   WL    F+ NL +L+  D   
Sbjct:   727 ERKTLSLSSNRSPKTQFL--H-NLSTVHISSCDGLKDLTWL---LFAPNLTSLEVLDSEL 780

Query:   402 --GMCT---TLPSVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETL 449
               G+      +   G +P  K L   R+  +  L S ++    P+ FPCL+T+
Sbjct:   781 VEGIINQEKAMTMSGIIPFQK-LESLRLHNLAMLRSIYW---QPLSFPCLKTI 829

GO:0006952 "defense response" evidence=IGI;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	831
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	7e-11
PLN03210	1153	PLN03210, PLN03210, Resistant to P	4e-07
PLN03210	1153	PLN03210, PLN03210, Resistant to P	1e-04
PLN03210	1153	PLN03210, PLN03210, Resistant to P	8e-04
PRK15386	426	PRK15386, PRK15386, type III secretion protein Gog	0.001
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.001

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score = 63.5 bits (155), Expect = 7e-11
 Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 2   WEGVLSCNIWDLPEERCD--IIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILL 59
           WE VL     +L        ++  L +SY  L   LK+CF Y +LFP+DY   +E++I L
Sbjct: 214 WEHVLEQLNNELAGRDGLNEVLSILSLSYDNLPMHLKRCFLYLALFPEDYNIRKEQLIKL 273

Query: 60  WSAVGFL 66
           W A GF+
Sbjct: 274 WIAEGFV 280

Length = 285

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 53.7 bits (129), Expect = 4e-07
 Identities = 84/340 (24%), Positives = 139/340 (40%), Gaps = 53/340 (15%)

Query: 185 LPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQ-IRTLPESVNKLYNLHTL 243
           +P  F+ + L    + G  + +L D +  L  LR ++L G++ ++ +P+ ++   NL TL
Sbjct: 604 MPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETL 662

Query: 244 SLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSR 303
            L  C  L +L + +  L KL  L+ S  ++LE +P GI     L++L  + +     SR
Sbjct: 663 KLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGIN----LKSL--YRLNLSGCSR 716

Query: 304 LRELKLLTHLRGTLTISKLENAQLDGKKNLK---VLMLRWTNSTDGSSLREAETQKGVLD 360
           L+    ++     L +   E A  +   NL+   +  L              +    ++ 
Sbjct: 717 LKSFPDISTNISWLDLD--ETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMT 774

Query: 361 MLKPHKNLEQFFISGYGG-TKFPIWLGDSSFSNLVTLK---FEDCGMCTTLPSVGQLPSL 416
           ML P  +L + F+S      + P     SS  NL  L+    E+C    TLP+   L SL
Sbjct: 775 MLSP--SLTRLFLSDIPSLVELP-----SSIQNLHKLEHLEIENCINLETLPTGINLESL 827

Query: 417 KHLAVRRMSRVRRLGSEFYGNDTPIPFPCLET------LRFENLLEWEDWIPHGSTQGVE 470
           + L +   SR+R              FP + T      L    + E   WI        E
Sbjct: 828 ESLDLSGCSRLR-------------TFPDISTNISDLNLSRTGIEEVPWWI--------E 866

Query: 471 GFPKLRELEVIGCSKLKGTFPE--HLPALEMLVIGGCEEL 508
            F  L  L++ GC+ L+        L  LE +    C  L
Sbjct: 867 KFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 45.3 bits (107), Expect = 1e-04
 Identities = 54/208 (25%), Positives = 86/208 (41%), Gaps = 47/208 (22%)

Query: 622 LSCRLEYLLLNDCKGLVKLPQSLLSLSSLREIEIYNCSSFVSFPEVALPSKVRSISIHRC 681
           ++  LE L L+DC  LV+LP S+  L+ L ++++  C +    P       +  +++  C
Sbjct: 655 MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGC 714

Query: 682 DALKSLPE-----AWM---------CDANLSLE---ILTISRCHSLTYIAEVQ------- 717
             LKS P+     +W+           +NL LE    L +    S      VQ       
Sbjct: 715 SRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMT 774

Query: 718 -LPPSLKNVVIRNCDNVRTLTVEEGIQSSSSRRYTSSLLEHLHIESCPSLTCIFSKNELL 776
            L PSL  + +   D    + +   IQ+          LEHL IE+C             
Sbjct: 775 MLSPSLTRLFLS--DIPSLVELPSSIQNLHK-------LEHLEIENC------------- 812

Query: 777 ATLESLEVGNLPPSLKSLEVLSCSKLES 804
             LE+L  G    SL+SL++  CS+L +
Sbjct: 813 INLETLPTGINLESLESLDLSGCSRLRT 840

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 42.9 bits (101), Expect = 8e-04
 Identities = 80/342 (23%), Positives = 145/342 (42%), Gaps = 63/342 (18%)

Query: 475 LRELEVIGCSKLK--GTFPEHLPALEMLVIGGCE--ELLVSITSLPALSKLEIGGCKKVV 530
           L  L++  CS L    +  ++L  LE L +  CE  E+L +  +L +L +L + GC ++ 
Sbjct: 659 LETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRL- 717

Query: 531 WRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQD 590
            +S  D   + + +   +T  +     P   RL  L+EL +  +K+E  +W+R    +Q 
Sbjct: 718 -KSFPDISTNISWLDLDETAIEEF---PSNLRLENLDELILCEMKSEK-LWER----VQP 768

Query: 591 ISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSLLSLSSL 650
           ++ L  +                        LS  L  L L+D   LV+LP S+ +L  L
Sbjct: 769 LTPLMTM------------------------LSPSLTRLFLSDIPSLVELPSSIQNLHKL 804

Query: 651 REIEIYNCSSFVSFPE-VALPSKVRSISIHRCDALKSLPEAWMCDANLSLEILTISRCHS 709
             +EI NC +  + P  + L S + S+ +  C  L++ P     D + ++  L +SR   
Sbjct: 805 EHLEIENCINLETLPTGINLES-LESLDLSGCSRLRTFP-----DISTNISDLNLSR--- 855

Query: 710 LTYIAEVQLP----PSLKNVVIRNCDNVRTLTVEEGIQSSSSRRYTSSLLEHLHIESCPS 765
            T I EV        +L  + +  C+N         +Q  S        LE +    C +
Sbjct: 856 -TGIEEVPWWIEKFSNLSFLDMNGCNN---------LQRVSLNISKLKHLETVDFSDCGA 905

Query: 766 LT-CIFSKNELLATLESLEVGNLPPSLKSLEVLSCSKLESIA 806
           LT   ++ +     + +  + +  PS   +  ++C  L+  A
Sbjct: 906 LTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEA 947

syringae 6; Provisional. Length = 1153

>gnl|CDD|237954 PRK15386, PRK15386, type III secretion protein GogB; Provisional

 Score = 41.8 bits (98), Expect = 0.001
 Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 25/136 (18%)

Query: 701 ILTISRCHSLTYIAEVQLPPSLKNVVIRNCDNVRTLT--VEEGIQS--SSSRRYTSSLLE 756
            L I  C  +  +    LP  L  + I NC+N+ TL   + EG++          S L E
Sbjct: 56  RLYIKDCD-IESLP--VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLPE 112

Query: 757 HLHIESCPSLTCIFSKNELLATLESLEVGNLPPSLKSLEVLSCSKLESIAERLDN--NTS 814
            +       +             +S++  N+P  L SL + S +       R+DN  + S
Sbjct: 113 SV---RSLEIKGSA--------TDSIK--NVPNGLTSLSINSYNPENQA--RIDNLISPS 157

Query: 815 LETITIISCKNLKNLP 830
           L+T+++  C N+  LP
Sbjct: 158 LKTLSLTGCSNII-LP 172

Length = 426

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.5 bits (97), Expect = 0.001
 Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 12/93 (12%)

Query: 204 ISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIK 263
           +S+LP  + +L  L  L+LSG +I  LP  +  L  L  L L     +         L  
Sbjct: 175 LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIE-------LLSS 227

Query: 264 LHHLNNSNTDSLEEMPL-----GIGKLTCLQTL 291
           L +L N +   L    L      IG L+ L+TL
Sbjct: 228 LSNLKNLSGLELSNNKLEDLPESIGNLSNLETL 260

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	831
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.92
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.92
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.92
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.89
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.88
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.87
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.61
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.56
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.53
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.52
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.52
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.5
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.48
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.39
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.3
KOG4341	483	consensus F-box protein containing LRR [General fu	99.08
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.97
KOG4341	483	consensus F-box protein containing LRR [General fu	98.96
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.9
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.88
PRK15386	426	type III secretion protein GogB; Provisional	98.79
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.78
PRK15386	426	type III secretion protein GogB; Provisional	98.77
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	98.77
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.69
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.67
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.65
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.56
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.55
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.48
PLN03150	623	hypothetical protein; Provisional	98.46
PLN03150	623	hypothetical protein; Provisional	98.44
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.42
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.42
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.39
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.23
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.17
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.14
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.13
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.1
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.08
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.98
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.97
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.84
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.82
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.55
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.41
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.28
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.26
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.16
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.15
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.02
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.02
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.99
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.84
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.84
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.58
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.48
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.42
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.12
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.11
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.89
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.12
KOG0473	326	consensus Leucine-rich repeat protein [Function un	94.88
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	94.61
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.38
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	94.32
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.93
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.59
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.54
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	92.38
smart00370	26	LRR Leucine-rich repeats, outliers.	92.07
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.07
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.5
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	85.89
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	84.79
smart00370	26	LRR Leucine-rich repeats, outliers.	84.79

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=100.00  E-value=5.3e-47  Score=427.48  Aligned_cols=291  Identities=31%  Similarity=0.468  Sum_probs=233.5

Q ss_pred             CchhcccccCcC----CCCCCCCchHHHHhccccCChhhhhHhhhhCCCCCCCccCHHHHHHHHHHcCCcCCCCCCCchH
Q 038658            1 DWEGVLSCNIWD----LPEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWSAVGFLDHRKSENPCE   76 (831)
Q Consensus         1 ~W~~~l~~~~~~----~~~~~~~i~~~L~lSY~~L~~~~k~cfl~~~~fp~~~~i~~~~Li~~wi~~G~i~~~~~~~~~~   76 (831)
                      ||+++.+...+.    .+++++.|+++|++|||+||.++|.||+|||+|||||+|++++||.|||||||+.+.++++.++
T Consensus       374 eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~  453 (889)
T KOG4658|consen  374 EWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAE  453 (889)
T ss_pred             HHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchh
Confidence            699999977665    3445689999999999999988999999999999999999999999999999999977789999


Q ss_pred             HHHHHHHHHHHhcccceeec--CCcccEeecHHHHHHHHHHhc-----CcEEEeeccccc--ccccccCCCeeEEEEEcc
Q 038658           77 DLGRKFFQELRARSFFQQSS--NNKSLFVMHDLINDLAHWAAG-----EIYFTMDYTSEV--NKQQSFSKNLRHLSCICG  147 (831)
Q Consensus        77 ~~~~~~~~~Lv~~~ll~~~~--~~~~~~~mHdlv~d~a~~i~~-----~~~~~~~~~~~~--~~~~~~~~~~r~l~~~~~  147 (831)
                      |+|+.|+++||+++|++..+  +...+|+|||+|||||.|+|+     ++..+.....+.  .+.......+|++++..+
T Consensus       454 d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~  533 (889)
T KOG4658|consen  454 DVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNN  533 (889)
T ss_pred             cchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEecc
Confidence            99999999999999999875  456899999999999999999     555444332111  122223467899999987


Q ss_pred             ccCccccccccccCCcceEEccccccCCCccccccccccccc-CCcceEEEEeCCCC-ccccCccccCCCCCceeecCCC
Q 038658          148 KYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLF-KLQRLRVFSLCGYW-ISELPDSIGDLRYLRYLNLSGT  225 (831)
Q Consensus       148 ~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~-i~~lp~~~~~l~~Lr~L~L~~~  225 (831)
                      ....+   ..-.++++|++|.++....     ....++..+| .++.||||||++|. +..+|++|+.|.+||||+++++
T Consensus       534 ~~~~~---~~~~~~~~L~tLll~~n~~-----~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t  605 (889)
T KOG4658|consen  534 KIEHI---AGSSENPKLRTLLLQRNSD-----WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT  605 (889)
T ss_pred             chhhc---cCCCCCCccceEEEeecch-----hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC
Confidence            65433   3445677899998876431     1345666767 89999999999887 8899999999999999999999


Q ss_pred             CCCccchhhhccCCccEEeecCcCccccccccccCcccccccccCCCCCcccccCCCCCccccccccceEecCCC
Q 038658          226 QIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDS  300 (831)
Q Consensus       226 ~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~  300 (831)
                      .|..+|..+++|+.|.+|++..+.....+|.....|.+||+|.+.... ...-...++.+.+|++|..+.....+
T Consensus       606 ~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~s  679 (889)
T KOG4658|consen  606 GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITISS  679 (889)
T ss_pred             CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheeecch
Confidence            999999999999999999999987777777777779999999997764 22112235555666666555554333

>PLN03210 Resistant to P

Probab=100.00  E-value=5e-40  Score=393.81  Aligned_cols=266  Identities=20%  Similarity=0.217  Sum_probs=172.8

Q ss_pred             CchhcccccCcCCCCCCCCchHHHHhccccCCh-hhhhHhhhhCCCCCCCccCHHHHHHHHHHcCCcCCCCCCCchHHHH
Q 038658            1 DWEGVLSCNIWDLPEERCDIIPALRVSYYYLSA-PLKQCFAYCSLFPKDYEFEEEEIILLWSAVGFLDHRKSENPCEDLG   79 (831)
Q Consensus         1 ~W~~~l~~~~~~~~~~~~~i~~~L~lSY~~L~~-~~k~cfl~~~~fp~~~~i~~~~Li~~wi~~G~i~~~~~~~~~~~~~   79 (831)
                      +|+++++...+..   +++|+++|++|||+|++ +.|.||+|||+||.++.+   +.+..|+|.+.+..           
T Consensus       406 ~W~~~l~~L~~~~---~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~-----------  468 (1153)
T PLN03210        406 DWMDMLPRLRNGL---DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLDV-----------  468 (1153)
T ss_pred             HHHHHHHHHHhCc---cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCCc-----------
Confidence            5999998765433   35899999999999987 599999999999998654   45777888775532           


Q ss_pred             HHHHHHHHhcccceeecCCcccEeecHHHHHHHHHHhcCcEE-------Eeecc--cccccccccCCCeeEEEEEccccC
Q 038658           80 RKFFQELRARSFFQQSSNNKSLFVMHDLINDLAHWAAGEIYF-------TMDYT--SEVNKQQSFSKNLRHLSCICGKYD  150 (831)
Q Consensus        80 ~~~~~~Lv~~~ll~~~~~~~~~~~mHdlv~d~a~~i~~~~~~-------~~~~~--~~~~~~~~~~~~~r~l~~~~~~~~  150 (831)
                      +..++.|+++||++...   ..+.|||++||||+++++++..       .....  ............++++++......
T Consensus       469 ~~~l~~L~~ksLi~~~~---~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~  545 (1153)
T PLN03210        469 NIGLKNLVDKSLIHVRE---DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEID  545 (1153)
T ss_pred             hhChHHHHhcCCEEEcC---CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccc
Confidence            23488999999998753   4699999999999999977531       11000  000011223456677766544332


Q ss_pred             ccc-cccccccCCcceEEccccccCCCcccccccccccccCC-cceEEEEeCCCCccccCccccCCCCCceeecCCCCCC
Q 038658          151 GVK-RFEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKL-QRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIR  228 (831)
Q Consensus       151 ~~~-~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~  228 (831)
                      ... ...+|.+|++|+.|.+........+.....+|.++..+ .+||.|++.++.+..+|..| ...+|++|+++++.+.
T Consensus       546 ~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~  624 (1153)
T PLN03210        546 ELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLE  624 (1153)
T ss_pred             eeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccc
Confidence            211 22456677777777664322111112233455555533 45777777777777777666 4577777777777777


Q ss_pred             ccchhhhccCCccEEeecCcCccccccccccCcccccccccCCCCCcccccCCCCCcccc
Q 038658          229 TLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCL  288 (831)
Q Consensus       229 ~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L  288 (831)
                      .+|..+..+++|++|++++|..++.+|. ++.+++|+.|++++|..+..+|..++++++|
T Consensus       625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L  683 (1153)
T PLN03210        625 KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKL  683 (1153)
T ss_pred             ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCC
Confidence            7777777777777777777666666664 6666777777777665555555444433333

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=9.7e-38  Score=376.11  Aligned_cols=531  Identities=16%  Similarity=0.179  Sum_probs=299.2

Q ss_pred             CCeeEEEEEccccCccccccccccCCcceEEccccccCCCccccccccccccc-CCcceEEEEeCCCCccc-cCccccCC
Q 038658          137 KNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLF-KLQRLRVFSLCGYWISE-LPDSIGDL  214 (831)
Q Consensus       137 ~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~-lp~~~~~l  214 (831)
                      ..++.+.+..+...... ...+..+++|++|.+.      .|.+.+.+|.+++ .+++|++|+|++|.+.. +|.  +.+
T Consensus        69 ~~v~~L~L~~~~i~~~~-~~~~~~l~~L~~L~Ls------~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l  139 (968)
T PLN00113         69 SRVVSIDLSGKNISGKI-SSAIFRLPYIQTINLS------NNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSI  139 (968)
T ss_pred             CcEEEEEecCCCccccC-ChHHhCCCCCCEEECC------CCccCCcCChHHhccCCCCCEEECcCCccccccCc--ccc
Confidence            35677776655433222 2445667777777443      3345556677766 77777777777777653 343  456


Q ss_pred             CCCceeecCCCCCC-ccchhhhccCCccEEeecCcCccccccccccCcccccccccCCCCCcccccCCCCCccccccccc
Q 038658          215 RYLRYLNLSGTQIR-TLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCN  293 (831)
Q Consensus       215 ~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~  293 (831)
                      ++|++|+|++|.+. .+|..++++++|++|++++|.....+|..++++++|++|++++|...+.+|..++++++|++|..
T Consensus       140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  219 (968)
T PLN00113        140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL  219 (968)
T ss_pred             CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence            77777777777776 56777777777777777777666677777777777777777777766667777777777766621


Q ss_pred             eEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEE
Q 038658          294 FVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFI  373 (831)
Q Consensus       294 ~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l  373 (831)
                      .                     .+.+.......+..+++|++|++++|.....           .+..+..+++|+.|++
T Consensus       220 ~---------------------~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-----------~p~~l~~l~~L~~L~L  267 (968)
T PLN00113        220 G---------------------YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP-----------IPSSLGNLKNLQYLFL  267 (968)
T ss_pred             c---------------------CCccCCcCChhHhcCCCCCEEECcCceeccc-----------cChhHhCCCCCCEEEC
Confidence            1                     0111111112234444555555544432111           1222333344444444


Q ss_pred             eeecCC-CCCccCCCCCCCceeEEEEecCCCCCCCC-CCCCCCCcceEEeccccCceeeCccccCCCCCCCCCCcceeec
Q 038658          374 SGYGGT-KFPIWLGDSSFSNLVTLKFEDCGMCTTLP-SVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRF  451 (831)
Q Consensus       374 ~~~~~~-~~p~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l  451 (831)
                      ++|... .+|.++..  +++|+.|++++|.+.+.+| .+..+++|+.|+++++.....                      
T Consensus       268 ~~n~l~~~~p~~l~~--l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~----------------------  323 (968)
T PLN00113        268 YQNKLSGPIPPSIFS--LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGK----------------------  323 (968)
T ss_pred             cCCeeeccCchhHhh--ccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCc----------------------
Confidence            444332 23333322  3444444444444433333 233444444444433221110                      


Q ss_pred             cccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCCCCCCcccEEEEccccCccccCCCCCccceEEEcCCCCccc
Q 038658          452 ENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPEHLPALEMLVIGGCEELLVSITSLPALSKLEIGGCKKVVW  531 (831)
Q Consensus       452 ~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~  531 (831)
                                   .+..+..+++|+.|++++| .+.+.+|.                  .+..+++|+.|++++|.....
T Consensus       324 -------------~~~~~~~l~~L~~L~L~~n-~l~~~~p~------------------~l~~~~~L~~L~Ls~n~l~~~  371 (968)
T PLN00113        324 -------------IPVALTSLPRLQVLQLWSN-KFSGEIPK------------------NLGKHNNLTVLDLSTNNLTGE  371 (968)
T ss_pred             -------------CChhHhcCCCCCEEECcCC-CCcCcCCh------------------HHhCCCCCcEEECCCCeeEee
Confidence                         1111334555566665553 33334443                  233445555555555542110


Q ss_pred             cccccccCCCCceeeccccchhhccCCCCCCCCCCcEEEEccCCCcchhcccCCcccccCCCccEEeeecCCCcccchhh
Q 038658          532 RSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAE  611 (831)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~  611 (831)
                      .                        +.....+++|+.|++.++.....   . ...+..+++|+.|++++|.--..++ .
T Consensus       372 ~------------------------p~~~~~~~~L~~L~l~~n~l~~~---~-p~~~~~~~~L~~L~L~~n~l~~~~p-~  422 (968)
T PLN00113        372 I------------------------PEGLCSSGNLFKLILFSNSLEGE---I-PKSLGACRSLRRVRLQDNSFSGELP-S  422 (968)
T ss_pred             C------------------------ChhHhCcCCCCEEECcCCEeccc---C-CHHHhCCCCCCEEECcCCEeeeECC-h
Confidence            0                        00111244556666655542221   1 2234566777777777753222222 1


Q ss_pred             hhhhHhhhhcccCCccEEEeccCCCCcccccccCCCCCCCeEEEecCCCCccccCCCCCCCccEEEEecCCCCccccccc
Q 038658          612 EEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSLLSLSSLREIEIYNCSSFVSFPEVALPSKVRSISIHRCDALKSLPEAW  691 (831)
Q Consensus       612 ~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~  691 (831)
                      .+.      .+ ++|+.|++++|...+.+|..+..+++|+.|++++|...+.+|.....++|+.|++++|.....+|..+
T Consensus       423 ~~~------~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~  495 (968)
T PLN00113        423 EFT------KL-PLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKL  495 (968)
T ss_pred             hHh------cC-CCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhh
Confidence            111      11 46888888888877777777777888888888888766666654446788888888887777777777


Q ss_pred             ccCCCCCcCeEEEccCCCcceeccC-CCCCCCceEEEecCCCCCccccccCccCCcccccCccccceEEEecCCCccccc
Q 038658          692 MCDANLSLEILTISRCHSLTYIAEV-QLPPSLKNVVIRNCDNVRTLTVEEGIQSSSSRRYTSSLLEHLHIESCPSLTCIF  770 (831)
Q Consensus       692 ~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~l~~~~L~~L~i~~c~~l~~i~  770 (831)
                      ..  +++|++|++++|.-...+|.. ..+++|++|++++|.-...+  |..+..     +++  |++|++++|.....+.
T Consensus       496 ~~--l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~-----l~~--L~~L~Ls~N~l~~~~p  564 (968)
T PLN00113        496 GS--LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQI--PASFSE-----MPV--LSQLDLSQNQLSGEIP  564 (968)
T ss_pred             hh--hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccC--ChhHhC-----ccc--CCEEECCCCcccccCC
Confidence            65  888888888887655556544 44568888888876544444  555555     666  8888888876554421


Q ss_pred             chhhhhhhhhccccCCCCCCcCeeEEccCCchhhhhhcCCCCCCCceEEecCCC
Q 038658          771 SKNELLATLESLEVGNLPPSLKSLEVLSCSKLESIAERLDNNTSLETITIISCK  824 (831)
Q Consensus       771 ~~~~~~~~l~~l~~~~l~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~i~~C~  824 (831)
                      .           ....+ ++|+.|++++|+....+|.. ..+.++....+.+.+
T Consensus       565 ~-----------~l~~l-~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~  605 (968)
T PLN00113        565 K-----------NLGNV-ESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNI  605 (968)
T ss_pred             h-----------hHhcC-cccCEEeccCCcceeeCCCc-chhcccChhhhcCCc
Confidence            0           01223 67888888888866666643 233344444444444

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.9e-37  Score=372.04  Aligned_cols=483  Identities=20%  Similarity=0.201  Sum_probs=340.9

Q ss_pred             CCeeEEEEEccccCccccccccccCCcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCcc-ccCccccCCC
Q 038658          137 KNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWIS-ELPDSIGDLR  215 (831)
Q Consensus       137 ~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~-~lp~~~~~l~  215 (831)
                      ..++.+.+..+..........+..+++||.|.+.      .|.+.+.+|.  ..+++|++|+|++|.+. .+|..+++++
T Consensus        93 ~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls------~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~  164 (968)
T PLN00113         93 PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS------NNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFS  164 (968)
T ss_pred             CCCCEEECCCCccCCcCChHHhccCCCCCEEECc------CCccccccCc--cccCCCCEEECcCCcccccCChHHhcCC
Confidence            5677888776654321111224478999999553      3445555554  35789999999999987 6799999999


Q ss_pred             CCceeecCCCCCC-ccchhhhccCCccEEeecCcCccccccccccCcccccccccCCCCCcccccCCCCCccccccccce
Q 038658          216 YLRYLNLSGTQIR-TLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNF  294 (831)
Q Consensus       216 ~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~  294 (831)
                      +||+|++++|.+. .+|..++++++|++|++++|.....+|..++++++|++|++++|...+.+|..++++++|++|+..
T Consensus       165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  244 (968)
T PLN00113        165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV  244 (968)
T ss_pred             CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECc
Confidence            9999999999986 789999999999999999998888899999999999999999999778899999999999999321


Q ss_pred             EecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEe
Q 038658          295 VVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFIS  374 (831)
Q Consensus       295 ~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~  374 (831)
                                           .+.+.......+.++++|+.|++++|.....           .+..+..+++|+.|+++
T Consensus       245 ---------------------~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-----------~p~~l~~l~~L~~L~Ls  292 (968)
T PLN00113        245 ---------------------YNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP-----------IPPSIFSLQKLISLDLS  292 (968)
T ss_pred             ---------------------CceeccccChhHhCCCCCCEEECcCCeeecc-----------CchhHhhccCcCEEECc
Confidence                                 2223333345678889999999988765332           33456677899999999


Q ss_pred             eecCC-CCCccCCCCCCCceeEEEEecCCCCCCCC-CCCCCCCcceEEeccccCceeeCccccCCCCCCCCCCcceeecc
Q 038658          375 GYGGT-KFPIWLGDSSFSNLVTLKFEDCGMCTTLP-SVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFE  452 (831)
Q Consensus       375 ~~~~~-~~p~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~  452 (831)
                      +|... .+|.++..  +++|+.|++++|.+.+.+| .+..+++|+.|++++|.....++..                   
T Consensus       293 ~n~l~~~~p~~~~~--l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~-------------------  351 (968)
T PLN00113        293 DNSLSGEIPELVIQ--LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN-------------------  351 (968)
T ss_pred             CCeeccCCChhHcC--CCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChH-------------------
Confidence            98865 56777765  8999999999999988877 6889999999999886533222211                   


Q ss_pred             ccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCCC---CCCcccEEEEcccc---CccccCCCCCccceEEEcCC
Q 038658          453 NLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPE---HLPALEMLVIGGCE---ELLVSITSLPALSKLEIGGC  526 (831)
Q Consensus       453 ~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~---~l~~L~~L~l~~~~---~l~~~~~~l~~L~~L~l~~~  526 (831)
                                      ++.+++|+.|++++| ++.+.+|.   .+++|+.|++++|.   .++..+..+++|+.|++++|
T Consensus       352 ----------------l~~~~~L~~L~Ls~n-~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n  414 (968)
T PLN00113        352 ----------------LGKHNNLTVLDLSTN-NLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN  414 (968)
T ss_pred             ----------------HhCCCCCcEEECCCC-eeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCC
Confidence                            223455555555552 34434443   23445555555544   22234455677777777776


Q ss_pred             CCccccccccccCCCCceeeccccchhhccCCCCCCCCCCcEEEEccCCCcchhcccCCcccccCCCccEEeeecCCCcc
Q 038658          527 KKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQ  606 (831)
Q Consensus       527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~  606 (831)
                      ......                        +..+..+++|+.|+++++....    .....+..+++|+.|++++|.-..
T Consensus       415 ~l~~~~------------------------p~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~n~~~~  466 (968)
T PLN00113        415 SFSGEL------------------------PSEFTKLPLVYFLDISNNNLQG----RINSRKWDMPSLQMLSLARNKFFG  466 (968)
T ss_pred             EeeeEC------------------------ChhHhcCCCCCEEECcCCcccC----ccChhhccCCCCcEEECcCceeee
Confidence            632210                        1112346777777777765322    223334567888888888875444


Q ss_pred             cchhhhhhhHhhhhcccCCccEEEeccCCCCcccccccCCCCCCCeEEEecCCCCccccCCC-CCCCccEEEEecCCCCc
Q 038658          607 SLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSLLSLSSLREIEIYNCSSFVSFPEVA-LPSKVRSISIHRCDALK  685 (831)
Q Consensus       607 ~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~l~~~~-~~~~L~~L~l~~c~~l~  685 (831)
                      .++.. +       . ..+|+.|++++|...+.+|..+.++++|++|++++|.....+|... .+++|++|++++|...+
T Consensus       467 ~~p~~-~-------~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  537 (968)
T PLN00113        467 GLPDS-F-------G-SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSG  537 (968)
T ss_pred             ecCcc-c-------c-cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccc
Confidence            43321 0       1 1468888888888877888888888888888888885555565432 37788888888887777


Q ss_pred             ccccccccCCCCCcCeEEEccCCCcceeccC-CCCCCCceEEEecCCCCCcc
Q 038658          686 SLPEAWMCDANLSLEILTISRCHSLTYIAEV-QLPPSLKNVVIRNCDNVRTL  736 (831)
Q Consensus       686 ~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~l~~l  736 (831)
                      .+|..+..  +++|+.|++++|.....+|.. ..+++|++|++++|+-...+
T Consensus       538 ~~p~~~~~--l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~  587 (968)
T PLN00113        538 QIPASFSE--MPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSL  587 (968)
T ss_pred             cCChhHhC--cccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeC
Confidence            77777766  888888888887665566644 33467888888777654445

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.92  E-value=3.1e-29  Score=241.84  Aligned_cols=407  Identities=22%  Similarity=0.255  Sum_probs=219.5

Q ss_pred             ccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCccccc
Q 038658          186 PKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLH  265 (831)
Q Consensus       186 ~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~  265 (831)
                      +++..+..|.||++.+|.+.++|.+++++..++.|+.++|++..+|+.++.+.+|+.|+.++|. ...+|++++.+..|+
T Consensus        62 ~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~-~~el~~~i~~~~~l~  140 (565)
T KOG0472|consen   62 EDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNE-LKELPDSIGRLLDLE  140 (565)
T ss_pred             HhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccc-eeecCchHHHHhhhh
Confidence            3344555555666666655555555555666666666666555666666666666666655543 445555555555555


Q ss_pred             ccccCCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCC
Q 038658          266 HLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTD  345 (831)
Q Consensus       266 ~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~  345 (831)
                      .|+..+|+ +.+.|.+++++.+|..|                                             .+.+|....
T Consensus       141 dl~~~~N~-i~slp~~~~~~~~l~~l---------------------------------------------~~~~n~l~~  174 (565)
T KOG0472|consen  141 DLDATNNQ-ISSLPEDMVNLSKLSKL---------------------------------------------DLEGNKLKA  174 (565)
T ss_pred             hhhccccc-cccCchHHHHHHHHHHh---------------------------------------------hccccchhh
Confidence            55555554 55555555555544444                                             111111110


Q ss_pred             CCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCCCCCCCCCcceEEecccc
Q 038658          346 GSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHLAVRRMS  425 (831)
Q Consensus       346 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~  425 (831)
                                  .++..-.++.|++++...|-.+.+|..++.  +.+|..|++..|.+ ..+|.++++..|+++++.. +
T Consensus       175 ------------l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~--l~~L~~LyL~~Nki-~~lPef~gcs~L~Elh~g~-N  238 (565)
T KOG0472|consen  175 ------------LPENHIAMKRLKHLDCNSNLLETLPPELGG--LESLELLYLRRNKI-RFLPEFPGCSLLKELHVGE-N  238 (565)
T ss_pred             ------------CCHHHHHHHHHHhcccchhhhhcCChhhcc--hhhhHHHHhhhccc-ccCCCCCccHHHHHHHhcc-c
Confidence                        111111246677777777777777777765  67777777777765 3456777777777777654 2


Q ss_pred             CceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCCC---CCCcccEEEE
Q 038658          426 RVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPE---HLPALEMLVI  502 (831)
Q Consensus       426 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~---~l~~L~~L~l  502 (831)
                      .++.++.+.                                  ...++++..|++++ ++++ .+|.   .+.+|+.|++
T Consensus       239 ~i~~lpae~----------------------------------~~~L~~l~vLDLRd-Nklk-e~Pde~clLrsL~rLDl  282 (565)
T KOG0472|consen  239 QIEMLPAEH----------------------------------LKHLNSLLVLDLRD-NKLK-EVPDEICLLRSLERLDL  282 (565)
T ss_pred             HHHhhHHHH----------------------------------hcccccceeeeccc-cccc-cCchHHHHhhhhhhhcc
Confidence            333322111                                  23577888888888 6887 7786   4567888888


Q ss_pred             cccc--CccccCCCCCccceEEEcCCCCccccccccccCCCCceeeccccchhhccCCCCCCCCCCcEEEEccCCCcchh
Q 038658          503 GGCE--ELLVSITSLPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYI  580 (831)
Q Consensus       503 ~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~  580 (831)
                      ++|.  .++..++++ .|+.|.+.+|+.-+.....-..+.+.....-.   + .....   .+.+=+.=.-.....  .-
T Consensus       283 SNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLr---s-~~~~d---glS~se~~~e~~~t~--~~  352 (565)
T KOG0472|consen  283 SNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLR---S-KIKDD---GLSQSEGGTETAMTL--PS  352 (565)
T ss_pred             cCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHH---H-hhccC---CCCCCcccccccCCC--CC
Confidence            8887  566677777 88888888888554321110000000000000   0 00000   000000000000000  00


Q ss_pred             cccCCcccccCCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEeccCCCCcccccccCCCCCCCeEEEecCCC
Q 038658          581 WKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSLLSLSSLREIEIYNCSS  660 (831)
Q Consensus       581 ~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~  660 (831)
                        .+......+.+.+.|++++ .+++.+|.+.|+...+     .-....+++.|. +..+|..+..+..+.+.-+..+..
T Consensus       353 --~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea~~~-----~~Vt~VnfskNq-L~elPk~L~~lkelvT~l~lsnn~  423 (565)
T KOG0472|consen  353 --ESFPDIYAIITTKILDVSD-KQLTLVPDEVFEAAKS-----EIVTSVNFSKNQ-LCELPKRLVELKELVTDLVLSNNK  423 (565)
T ss_pred             --Ccccchhhhhhhhhhcccc-cccccCCHHHHHHhhh-----cceEEEecccch-HhhhhhhhHHHHHHHHHHHhhcCc
Confidence              0011123455677778777 6778888776665432     125667777776 455676666555555444444434


Q ss_pred             CccccCCCC-CCCccEEEEecCCCCcccccccccCCCCCcCeEEEccCCCcceec
Q 038658          661 FVSFPEVAL-PSKVRSISIHRCDALKSLPEAWMCDANLSLEILTISRCHSLTYIA  714 (831)
Q Consensus       661 l~~l~~~~~-~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~  714 (831)
                      +..+|.... +++|..|++++ +.+.++|..+..  +..|+.|+++.+ ..+.+|
T Consensus       424 isfv~~~l~~l~kLt~L~L~N-N~Ln~LP~e~~~--lv~Lq~LnlS~N-rFr~lP  474 (565)
T KOG0472|consen  424 ISFVPLELSQLQKLTFLDLSN-NLLNDLPEEMGS--LVRLQTLNLSFN-RFRMLP  474 (565)
T ss_pred             cccchHHHHhhhcceeeeccc-chhhhcchhhhh--hhhhheeccccc-ccccch
Confidence            444433211 66777777766 446677766665  666777777764 444444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.92  E-value=3.1e-26  Score=231.34  Aligned_cols=362  Identities=19%  Similarity=0.201  Sum_probs=212.6

Q ss_pred             ceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcccccccccCC
Q 038658          193 RLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSN  271 (831)
Q Consensus       193 ~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~  271 (831)
                      .-++||+++|.+..+ +..|.++++|+.+++.+|.++.+|...+...+|+.|+|.+|.....-.+.+..++.||.|||+.
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr  158 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR  158 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence            457899999999887 6778999999999999999999998888888999999999764443455688899999999998


Q ss_pred             CCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCChhh
Q 038658          272 TDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLRE  351 (831)
Q Consensus       272 ~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  351 (831)
                      |. +..+|..                                            .+....++++|++..|.+...     
T Consensus       159 N~-is~i~~~--------------------------------------------sfp~~~ni~~L~La~N~It~l-----  188 (873)
T KOG4194|consen  159 NL-ISEIPKP--------------------------------------------SFPAKVNIKKLNLASNRITTL-----  188 (873)
T ss_pred             ch-hhcccCC--------------------------------------------CCCCCCCceEEeecccccccc-----
Confidence            87 5555521                                            111223344444444333221     


Q ss_pred             hhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCC-CCCCCCCCCcceEEeccccCceee
Q 038658          352 AETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTT-LPSVGQLPSLKHLAVRRMSRVRRL  430 (831)
Q Consensus       352 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~L~~~~~l~~~  430 (831)
                            ....+..+.+|..|.|+.|+++.+|...+. .+++|+.|+|..|.+... .-.+.++++|+.|.+..++ +..+
T Consensus       189 ------~~~~F~~lnsL~tlkLsrNrittLp~r~Fk-~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~-I~kL  260 (873)
T KOG4194|consen  189 ------ETGHFDSLNSLLTLKLSRNRITTLPQRSFK-RLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRND-ISKL  260 (873)
T ss_pred             ------ccccccccchheeeecccCcccccCHHHhh-hcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcC-cccc
Confidence                  112233334455555555555555543332 244555555555443221 1134444555554444422 1111


Q ss_pred             CccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCCCCCCcccEEEEccccCccc
Q 038658          431 GSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPEHLPALEMLVIGGCEELLV  510 (831)
Q Consensus       431 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~  510 (831)
                      .                               .+.   +.++.++++|++.. +++. .+.+                 .
T Consensus       261 ~-------------------------------DG~---Fy~l~kme~l~L~~-N~l~-~vn~-----------------g  287 (873)
T KOG4194|consen  261 D-------------------------------DGA---FYGLEKMEHLNLET-NRLQ-AVNE-----------------G  287 (873)
T ss_pred             c-------------------------------Ccc---eeeecccceeeccc-chhh-hhhc-----------------c
Confidence            0                               111   33566667777766 4554 3322                 1


Q ss_pred             cCCCCCccceEEEcCCCCccccccccccCCCCceeeccccchhhccCCCCCCCCCCcEEEEccCCCcchhcccCCccccc
Q 038658          511 SITSLPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQD  590 (831)
Q Consensus       511 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~  590 (831)
                      ++..+++|+.|+++.|......                        .......++|++|+++++.    +...+.+.+..
T Consensus       288 ~lfgLt~L~~L~lS~NaI~rih------------------------~d~WsftqkL~~LdLs~N~----i~~l~~~sf~~  339 (873)
T KOG4194|consen  288 WLFGLTSLEQLDLSYNAIQRIH------------------------IDSWSFTQKLKELDLSSNR----ITRLDEGSFRV  339 (873)
T ss_pred             cccccchhhhhccchhhhheee------------------------cchhhhcccceeEeccccc----cccCChhHHHH
Confidence            3334455555555554422210                        0011224556666665554    22245555666


Q ss_pred             CCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEeccCCCCcccc---cccCCCCCCCeEEEecCCCCccccCC
Q 038658          591 ISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLP---QSLLSLSSLREIEIYNCSSFVSFPEV  667 (831)
Q Consensus       591 l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~---~~l~~l~~L~~L~L~~~~~l~~l~~~  667 (831)
                      +..|++|.++. +++.++....|..+       ++|++|++++|.....+.   ..+..+++|+.|++.+| +++++|.-
T Consensus       340 L~~Le~LnLs~-Nsi~~l~e~af~~l-------ssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~kr  410 (873)
T KOG4194|consen  340 LSQLEELNLSH-NSIDHLAEGAFVGL-------SSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKR  410 (873)
T ss_pred             HHHhhhhcccc-cchHHHHhhHHHHh-------hhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecchh
Confidence            77777777777 67777776666655       577778877777554432   24556778888888877 67777765


Q ss_pred             CC--CCCccEEEEecCCCCcccccccccCCCCCcCeEEEc
Q 038658          668 AL--PSKVRSISIHRCDALKSLPEAWMCDANLSLEILTIS  705 (831)
Q Consensus       668 ~~--~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~  705 (831)
                      .+  +++|+.|++.+|...+.-|..|..  + .|++|.+.
T Consensus       411 Afsgl~~LE~LdL~~NaiaSIq~nAFe~--m-~Lk~Lv~n  447 (873)
T KOG4194|consen  411 AFSGLEALEHLDLGDNAIASIQPNAFEP--M-ELKELVMN  447 (873)
T ss_pred             hhccCcccceecCCCCcceeeccccccc--c-hhhhhhhc
Confidence            55  778888888776655555555543  3 66666553

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.92  E-value=8.3e-29  Score=238.88  Aligned_cols=223  Identities=23%  Similarity=0.231  Sum_probs=129.1

Q ss_pred             cccccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcc
Q 038658          183 SILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLI  262 (831)
Q Consensus       183 ~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~  262 (831)
                      +.|+++.++..++.|+.++|.+..+|+.++.+..|+.|+.++|.+.++|++++.+..|+.|+..+|. +..+|++++.+.
T Consensus        82 ~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~  160 (565)
T KOG0472|consen   82 QLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLS  160 (565)
T ss_pred             hCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccc-cccCchHHHHHH
Confidence            4455555555555555555555555555555555555555555555555555555555555555432 444555555555


Q ss_pred             cccccccCCCCCcccccCCCCCccccccccceEecCCCCCcchhhhcccccc----CeeeEcccccccccCCCCcceEEE
Q 038658          263 KLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLR----GTLTISKLENAQLDGKKNLKVLML  338 (831)
Q Consensus       263 ~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~----~~l~i~~l~~~~l~~~~~L~~L~l  338 (831)
                      +|..|++.+|. ++.+|+..-+++.|++|+....-  -+....+++.+..|.    ..+.+..+.  .|.++..|++|++
T Consensus       161 ~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N~--L~tlP~~lg~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~  235 (565)
T KOG0472|consen  161 KLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSNL--LETLPPELGGLESLELLYLRRNKIRFLP--EFPGCSLLKELHV  235 (565)
T ss_pred             HHHHhhccccc-hhhCCHHHHHHHHHHhcccchhh--hhcCChhhcchhhhHHHHhhhcccccCC--CCCccHHHHHHHh
Confidence            55555555554 33444333334444444211100  001111111111111    033333333  5777777888777


Q ss_pred             EeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCCCCCCCCCcce
Q 038658          339 RWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKH  418 (831)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~  418 (831)
                      ..|....           -..+....++++..|++..|+.+.+|..+.-  +++|.+||+++|.+..-.+.++++ .|+.
T Consensus       236 g~N~i~~-----------lpae~~~~L~~l~vLDLRdNklke~Pde~cl--LrsL~rLDlSNN~is~Lp~sLgnl-hL~~  301 (565)
T KOG0472|consen  236 GENQIEM-----------LPAEHLKHLNSLLVLDLRDNKLKEVPDEICL--LRSLERLDLSNNDISSLPYSLGNL-HLKF  301 (565)
T ss_pred             cccHHHh-----------hHHHHhcccccceeeeccccccccCchHHHH--hhhhhhhcccCCccccCCcccccc-eeee
Confidence            5554311           1223456778999999999999999998865  789999999999998777799999 9999


Q ss_pred             EEecccc
Q 038658          419 LAVRRMS  425 (831)
Q Consensus       419 L~L~~~~  425 (831)
                      |.+.|++
T Consensus       302 L~leGNP  308 (565)
T KOG0472|consen  302 LALEGNP  308 (565)
T ss_pred             hhhcCCc
Confidence            9999875

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.91  E-value=1.6e-26  Score=246.34  Aligned_cols=436  Identities=24%  Similarity=0.284  Sum_probs=267.4

Q ss_pred             CCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCccccccccc
Q 038658          190 KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNN  269 (831)
Q Consensus       190 ~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l  269 (831)
                      +.-+|++||+++|.+..+|..+..+.+|+.|+++.|.|..+|.+++++.+|++|.|.+| .+..+|.++..+++|++|++
T Consensus        43 ~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~Ldl  121 (1081)
T KOG0618|consen   43 KRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNN-RLQSLPASISELKNLQYLDL  121 (1081)
T ss_pred             heeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccc-hhhcCchhHHhhhccccccc
Confidence            44459999999999999999999999999999999999999999999999999999975 58889999999999999999


Q ss_pred             CCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccc--cccCeeeEcccccccccCCCCcce-EEEEeecCCCC
Q 038658          270 SNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLT--HLRGTLTISKLENAQLDGKKNLKV-LMLRWTNSTDG  346 (831)
Q Consensus       270 ~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~--~L~~~l~i~~l~~~~l~~~~~L~~-L~l~~~~~~~~  346 (831)
                      ++|. ...+|.-+..++.+..+......     .+..++...  ++  .+....+.........+++. |++++|...  
T Consensus       122 S~N~-f~~~Pl~i~~lt~~~~~~~s~N~-----~~~~lg~~~ik~~--~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~--  191 (1081)
T KOG0618|consen  122 SFNH-FGPIPLVIEVLTAEEELAASNNE-----KIQRLGQTSIKKL--DLRLNVLGGSFLIDIYNLTHQLDLRYNEME--  191 (1081)
T ss_pred             chhc-cCCCchhHHhhhHHHHHhhhcch-----hhhhhccccchhh--hhhhhhcccchhcchhhhheeeecccchhh--
Confidence            9998 77788888888877776322110     111111111  11  11111222222222223333 555555432  


Q ss_pred             CChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCCCCCCCCCcceEEeccccC
Q 038658          347 SSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHLAVRRMSR  426 (831)
Q Consensus       347 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~  426 (831)
                                  .-.+..+.+|+.+....+....+-.     .-++++.|+.++|.+....+ -..-.+|+.++++.+. 
T Consensus       192 ------------~~dls~~~~l~~l~c~rn~ls~l~~-----~g~~l~~L~a~~n~l~~~~~-~p~p~nl~~~dis~n~-  252 (1081)
T KOG0618|consen  192 ------------VLDLSNLANLEVLHCERNQLSELEI-----SGPSLTALYADHNPLTTLDV-HPVPLNLQYLDISHNN-  252 (1081)
T ss_pred             ------------hhhhhhccchhhhhhhhcccceEEe-----cCcchheeeeccCcceeecc-ccccccceeeecchhh-
Confidence                        0113333444444444444332211     12445555555554442111 0111234444443321 


Q ss_pred             ceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCCC---CCCcccEEEEc
Q 038658          427 VRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPE---HLPALEMLVIG  503 (831)
Q Consensus       427 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~---~l~~L~~L~l~  503 (831)
                                                 +.++.+|        ++.+++|+.+.+.+ +.+. .+|.   ...+|+.|.+.
T Consensus       253 ---------------------------l~~lp~w--------i~~~~nle~l~~n~-N~l~-~lp~ri~~~~~L~~l~~~  295 (1081)
T KOG0618|consen  253 ---------------------------LSNLPEW--------IGACANLEALNANH-NRLV-ALPLRISRITSLVSLSAA  295 (1081)
T ss_pred             ---------------------------hhcchHH--------HHhcccceEecccc-hhHH-hhHHHHhhhhhHHHHHhh
Confidence                                       1111122        33456666666655 4554 5553   23344444444


Q ss_pred             ccc--CccccCCCCCccceEEEcCCCCccccccccccCCCCceeeccccchhhccCCCCCCCCCCcEEEEccCCCcchhc
Q 038658          504 GCE--ELLVSITSLPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIW  581 (831)
Q Consensus       504 ~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~  581 (831)
                      .|.  .++.....+..|+.|++..|..-.                                                   
T Consensus       296 ~nel~yip~~le~~~sL~tLdL~~N~L~~---------------------------------------------------  324 (1081)
T KOG0618|consen  296 YNELEYIPPFLEGLKSLRTLDLQSNNLPS---------------------------------------------------  324 (1081)
T ss_pred             hhhhhhCCCcccccceeeeeeehhccccc---------------------------------------------------
Confidence            443  222233335555555555544211                                                   


Q ss_pred             ccCCcccccCCC-ccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEeccCCCCcccccccCCCCCCCeEEEecCCC
Q 038658          582 KRHNGFLQDISS-LKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSLLSLSSLREIEIYNCSS  660 (831)
Q Consensus       582 ~~~~~~~~~l~~-L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~  660 (831)
                       .|..++..... |+.|..+. +.+..++..+....       +.|+.|++.+|.........+.++.+|+.|+|++| .
T Consensus       325 -lp~~~l~v~~~~l~~ln~s~-n~l~~lp~~~e~~~-------~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN-r  394 (1081)
T KOG0618|consen  325 -LPDNFLAVLNASLNTLNVSS-NKLSTLPSYEENNH-------AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN-R  394 (1081)
T ss_pred             -cchHHHhhhhHHHHHHhhhh-ccccccccccchhh-------HHHHHHHHhcCcccccchhhhccccceeeeeeccc-c
Confidence             12221111111 23333322 33333331111111       46889999999987777667888999999999998 7


Q ss_pred             CccccCCCC--CCCccEEEEecCCCCcccccccccCCCCCcCeEEEccCCCcceeccCCCCCCCceEEEecCCCCCcccc
Q 038658          661 FVSFPEVAL--PSKVRSISIHRCDALKSLPEAWMCDANLSLEILTISRCHSLTYIAEVQLPPSLKNVVIRNCDNVRTLTV  738 (831)
Q Consensus       661 l~~l~~~~~--~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~  738 (831)
                      +.++|...+  +..|++|+++| +.++.+|.....  +..|++|...+ +++..+|+...++.|+.+|+ +|++|+.+..
T Consensus       395 L~~fpas~~~kle~LeeL~LSG-NkL~~Lp~tva~--~~~L~tL~ahs-N~l~~fPe~~~l~qL~~lDl-S~N~L~~~~l  469 (1081)
T KOG0618|consen  395 LNSFPASKLRKLEELEELNLSG-NKLTTLPDTVAN--LGRLHTLRAHS-NQLLSFPELAQLPQLKVLDL-SCNNLSEVTL  469 (1081)
T ss_pred             cccCCHHHHhchHHhHHHhccc-chhhhhhHHHHh--hhhhHHHhhcC-CceeechhhhhcCcceEEec-ccchhhhhhh
Confidence            888987655  88999999999 669999988887  99999998877 47888997777889999999 5688887743


Q ss_pred             ccCccCCcccccCccccceEEEecCCCc
Q 038658          739 EEGIQSSSSRRYTSSLLEHLHIESCPSL  766 (831)
Q Consensus       739 ~~~~~~~~~~~l~~~~L~~L~i~~c~~l  766 (831)
                      +..        +++++|++|+++++..+
T Consensus       470 ~~~--------~p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  470 PEA--------LPSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             hhh--------CCCcccceeeccCCccc
Confidence            332        44455999999998764

>PLN03210 Resistant to P

Probab=99.90  E-value=4.7e-23  Score=247.86  Aligned_cols=199  Identities=20%  Similarity=0.326  Sum_probs=108.6

Q ss_pred             CCCCcEEEEccCCCcchhcccCCcccccCCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEeccCCCCc----
Q 038658          563 LPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLV----  638 (831)
Q Consensus       563 l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~----  638 (831)
                      +++|+.|.+++|..++.   .+    ...++|++|+++++ .+..+|...        .+ .+|++|.+.++....    
T Consensus       703 l~sL~~L~Lsgc~~L~~---~p----~~~~nL~~L~L~~n-~i~~lP~~~--------~l-~~L~~L~l~~~~~~~l~~~  765 (1153)
T PLN03210        703 LKSLYRLNLSGCSRLKS---FP----DISTNISWLDLDET-AIEEFPSNL--------RL-ENLDELILCEMKSEKLWER  765 (1153)
T ss_pred             CCCCCEEeCCCCCCccc---cc----cccCCcCeeecCCC-ccccccccc--------cc-cccccccccccchhhcccc
Confidence            45556666666554443   11    11345666666553 344444221        11 356666665543211    


Q ss_pred             --cc-ccccCCCCCCCeEEEecCCCCccccCCCC-CCCccEEEEecCCCCcccccccccCCCCCcCeEEEccCCCcceec
Q 038658          639 --KL-PQSLLSLSSLREIEIYNCSSFVSFPEVAL-PSKVRSISIHRCDALKSLPEAWMCDANLSLEILTISRCHSLTYIA  714 (831)
Q Consensus       639 --~l-~~~l~~l~~L~~L~L~~~~~l~~l~~~~~-~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~  714 (831)
                        .+ +.....+++|+.|++++|+.+..+|.... +++|+.|++++|..++.+|... .  +++|+.|++++|..++.+|
T Consensus       766 ~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~--L~sL~~L~Ls~c~~L~~~p  842 (1153)
T PLN03210        766 VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-N--LESLESLDLSGCSRLRTFP  842 (1153)
T ss_pred             ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-C--ccccCEEECCCCCcccccc
Confidence              00 11112235667777777666666664322 6667777777776666666554 2  6667777777776666665


Q ss_pred             cCCCCCCCceEEEecCCCCCccccccCccCCcccccCccccceEEEecCCCcccccchhhhhhhhhccccCCCCCCcCee
Q 038658          715 EVQLPPSLKNVVIRNCDNVRTLTVEEGIQSSSSRRYTSSLLEHLHIESCPSLTCIFSKNELLATLESLEVGNLPPSLKSL  794 (831)
Q Consensus       715 ~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~l~~~~L~~L~i~~c~~l~~i~~~~~~~~~l~~l~~~~l~~~L~~L  794 (831)
                      .  .+++|+.|++++ +.++.+  |..+..     +++  |++|++++|++++.+..           ....+ ++|+.+
T Consensus       843 ~--~~~nL~~L~Ls~-n~i~~i--P~si~~-----l~~--L~~L~L~~C~~L~~l~~-----------~~~~L-~~L~~L  898 (1153)
T PLN03210        843 D--ISTNISDLNLSR-TGIEEV--PWWIEK-----FSN--LSFLDMNGCNNLQRVSL-----------NISKL-KHLETV  898 (1153)
T ss_pred             c--cccccCEeECCC-CCCccC--hHHHhc-----CCC--CCEEECCCCCCcCccCc-----------ccccc-cCCCee
Confidence            2  345667777665 455655  555544     555  77777777776666320           11223 566666


Q ss_pred             EEccCCchhhh
Q 038658          795 EVLSCSKLESI  805 (831)
Q Consensus       795 ~l~~~~~l~~l  805 (831)
                      ++++|++|+.+
T Consensus       899 ~l~~C~~L~~~  909 (1153)
T PLN03210        899 DFSDCGALTEA  909 (1153)
T ss_pred             ecCCCcccccc
Confidence            77777666544

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.89  E-value=1.4e-24  Score=219.46  Aligned_cols=280  Identities=18%  Similarity=0.171  Sum_probs=199.8

Q ss_pred             CcccccccccccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccc-hhhhccCCccEEeecCcCccccc
Q 038658          176 SQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLP-ESVNKLYNLHTLSLEGCRGLRKL  254 (831)
Q Consensus       176 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~l  254 (831)
                      +.|.+...-+..|.++++|+.+++..|.++.+|...+...||+.|+|.+|.|.++- +++..+..||+|||+.|. +..+
T Consensus        86 snNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~-is~i  164 (873)
T KOG4194|consen   86 SNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL-ISEI  164 (873)
T ss_pred             cccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhch-hhcc
Confidence            44556555566666999999999999999999987788888999999999999885 578999999999999965 6666


Q ss_pred             ccc-ccCcccccccccCCCCCcccccC-CCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCC
Q 038658          255 CAG-MGNLIKLHHLNNSNTDSLEEMPL-GIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKN  332 (831)
Q Consensus       255 p~~-i~~L~~L~~L~l~~~~~~~~~p~-~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~  332 (831)
                      |.. +..=.++++|+|++|. ++.+-. .|..+.+|-+|                    +|. .++++.+....|+.+++
T Consensus       165 ~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tl--------------------kLs-rNrittLp~r~Fk~L~~  222 (873)
T KOG4194|consen  165 PKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTL--------------------KLS-RNRITTLPQRSFKRLPK  222 (873)
T ss_pred             cCCCCCCCCCceEEeecccc-ccccccccccccchheee--------------------ecc-cCcccccCHHHhhhcch
Confidence            643 6676889999999998 554443 37777777777                    222 55677777777888888


Q ss_pred             cceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCC-CCC
Q 038658          333 LKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLP-SVG  411 (831)
Q Consensus       333 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~  411 (831)
                      |+.|++..|.+...           ..-.+..+++|+.|.+..|.+..+.+..+- .+.+++.|+|+.|.+...-. ++-
T Consensus       223 L~~LdLnrN~iriv-----------e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy-~l~kme~l~L~~N~l~~vn~g~lf  290 (873)
T KOG4194|consen  223 LESLDLNRNRIRIV-----------EGLTFQGLPSLQNLKLQRNDISKLDDGAFY-GLEKMEHLNLETNRLQAVNEGWLF  290 (873)
T ss_pred             hhhhhccccceeee-----------hhhhhcCchhhhhhhhhhcCcccccCccee-eecccceeecccchhhhhhccccc
Confidence            88888877654221           123467778888888888888777655443 37888888888888765444 777


Q ss_pred             CCCCcceEEeccccCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCC
Q 038658          412 QLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFP  491 (831)
Q Consensus       412 ~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p  491 (831)
                      +++.|+.|+++++ .++.+...                         .         ....++|++|++++ ++++ .++
T Consensus       291 gLt~L~~L~lS~N-aI~rih~d-------------------------~---------WsftqkL~~LdLs~-N~i~-~l~  333 (873)
T KOG4194|consen  291 GLTSLEQLDLSYN-AIQRIHID-------------------------S---------WSFTQKLKELDLSS-NRIT-RLD  333 (873)
T ss_pred             ccchhhhhccchh-hhheeecc-------------------------h---------hhhcccceeEeccc-cccc-cCC
Confidence            8888888888764 23322110                         1         33568899999988 6777 666


Q ss_pred             C----CCCcccEEEEccccCc---cccCCCCCccceEEEcCCC
Q 038658          492 E----HLPALEMLVIGGCEEL---LVSITSLPALSKLEIGGCK  527 (831)
Q Consensus       492 ~----~l~~L~~L~l~~~~~l---~~~~~~l~~L~~L~l~~~~  527 (831)
                      +    .+..|+.|.++.|..-   ...+..+.+|++|+++.|.
T Consensus       334 ~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~  376 (873)
T KOG4194|consen  334 EGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE  376 (873)
T ss_pred             hhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe
Confidence            4    3556666666666521   2344456666666666665

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.88  E-value=3.3e-25  Score=225.48  Aligned_cols=318  Identities=24%  Similarity=0.262  Sum_probs=201.1

Q ss_pred             CCeeEEEEEccccCccccccccccCCcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCccccCccccCCCC
Q 038658          137 KNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRY  216 (831)
Q Consensus       137 ~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~  216 (831)
                      .++.|+++..+....+  ..++..++.||++++.+..     --...+|+++|+++.|.+|||++|++.+.|..+..-++
T Consensus        55 qkLEHLs~~HN~L~~v--hGELs~Lp~LRsv~~R~N~-----LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn  127 (1255)
T KOG0444|consen   55 QKLEHLSMAHNQLISV--HGELSDLPRLRSVIVRDNN-----LKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKN  127 (1255)
T ss_pred             hhhhhhhhhhhhhHhh--hhhhccchhhHHHhhhccc-----cccCCCCchhcccccceeeecchhhhhhcchhhhhhcC
Confidence            5677888777654332  3567788899998765532     12356899999999999999999999999999999999


Q ss_pred             CceeecCCCCCCccchhh-hccCCccEEeecCcCccccccccccCcccccccccCCCCCcccccCCCCCccccccccceE
Q 038658          217 LRYLNLSGTQIRTLPESV-NKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFV  295 (831)
Q Consensus       217 Lr~L~L~~~~i~~lp~~i-~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~  295 (831)
                      +-+|+||+|+|.++|..+ -+|+.|-+|||++|+ +..+|..+.+|.+|+.|.+++|....---..+..+++|++|....
T Consensus       128 ~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~  206 (1255)
T KOG0444|consen  128 SIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSN  206 (1255)
T ss_pred             cEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccc
Confidence            999999999999999654 899999999999975 889999999999999999999973222112233455555552111


Q ss_pred             ecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEee
Q 038658          296 VGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISG  375 (831)
Q Consensus       296 ~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~  375 (831)
                      ....                    ..--...+.++.+|..++++.|+...            +++.+-.+.+|+.|++++
T Consensus       207 TqRT--------------------l~N~Ptsld~l~NL~dvDlS~N~Lp~------------vPecly~l~~LrrLNLS~  254 (1255)
T KOG0444|consen  207 TQRT--------------------LDNIPTSLDDLHNLRDVDLSENNLPI------------VPECLYKLRNLRRLNLSG  254 (1255)
T ss_pred             ccch--------------------hhcCCCchhhhhhhhhccccccCCCc------------chHHHhhhhhhheeccCc
Confidence            1100                    00001234444555566665555421            345555666677777777


Q ss_pred             ecCCCCCccCCCCCCCceeEEEEecCCCCCCCCCCCCCCCcceEEeccccCceeeCccccCCCCCCCCCCcceeeccccc
Q 038658          376 YGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLL  455 (831)
Q Consensus       376 ~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  455 (831)
                      |.++.+....+.  ..+|+.|+++.|++......+.++++|+.|.+.++. +                            
T Consensus       255 N~iteL~~~~~~--W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~Nk-L----------------------------  303 (1255)
T KOG0444|consen  255 NKITELNMTEGE--WENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNK-L----------------------------  303 (1255)
T ss_pred             CceeeeeccHHH--HhhhhhhccccchhccchHHHhhhHHHHHHHhccCc-c----------------------------
Confidence            766655444333  456667777766654333356666666666665432 1                            


Q ss_pred             cccccccCCCCCCCCCCCcccEEeEcCCcCcccCCCCC---CCcccEEEEccccC--ccccCCCCCccceEEEcCCCCcc
Q 038658          456 EWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPEH---LPALEMLVIGGCEE--LLVSITSLPALSKLEIGGCKKVV  530 (831)
Q Consensus       456 ~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~---l~~L~~L~l~~~~~--l~~~~~~l~~L~~L~l~~~~~~~  530 (831)
                           ...+.|.+++.+.+|+.+...+ +++. .+|++   ++.|+.|.++.|..  ++..+..++.|+.|++..|+.+.
T Consensus       304 -----~FeGiPSGIGKL~~Levf~aan-N~LE-lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLV  376 (1255)
T KOG0444|consen  304 -----TFEGIPSGIGKLIQLEVFHAAN-NKLE-LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLV  376 (1255)
T ss_pred             -----cccCCccchhhhhhhHHHHhhc-cccc-cCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCcc
Confidence                 1122333444555555555554 4444 44542   34455555555542  23344455566666666665555


Q ss_pred             cc
Q 038658          531 WR  532 (831)
Q Consensus       531 ~~  532 (831)
                      .+
T Consensus       377 MP  378 (1255)
T KOG0444|consen  377 MP  378 (1255)
T ss_pred             CC
Confidence            44

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.87  E-value=1.1e-24  Score=221.81  Aligned_cols=113  Identities=21%  Similarity=0.239  Sum_probs=85.1

Q ss_pred             ccCCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEeccCCC-CcccccccCCCCCCCeEEEecCCCCccccCC
Q 038658          589 QDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKG-LVKLPQSLLSLSSLREIEIYNCSSFVSFPEV  667 (831)
Q Consensus       589 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~-~~~l~~~l~~l~~L~~L~L~~~~~l~~l~~~  667 (831)
                      +...+|++|.++. ++++.+|....       .+ +.|+.|.+.+|.. ...+|++++.+.+|+.+...+| .++-+|++
T Consensus       265 ~~W~~lEtLNlSr-NQLt~LP~avc-------KL-~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LElVPEg  334 (1255)
T KOG0444|consen  265 GEWENLETLNLSR-NQLTVLPDAVC-------KL-TKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLELVPEG  334 (1255)
T ss_pred             HHHhhhhhhcccc-chhccchHHHh-------hh-HHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-ccccCchh
Confidence            4455677778877 67777764321       22 3688888888764 3568999999999999998887 78888875


Q ss_pred             CC-CCCccEEEEecCCCCcccccccccCCCCCcCeEEEccCCCcceec
Q 038658          668 AL-PSKVRSISIHRCDALKSLPEAWMCDANLSLEILTISRCHSLTYIA  714 (831)
Q Consensus       668 ~~-~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~  714 (831)
                      .. +..|+.|.++. +.+-.+|+.+.-  ++-|+.|++..+|++.--|
T Consensus       335 lcRC~kL~kL~L~~-NrLiTLPeaIHl--L~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  335 LCRCVKLQKLKLDH-NRLITLPEAIHL--LPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             hhhhHHHHHhcccc-cceeechhhhhh--cCCcceeeccCCcCccCCC
Confidence            55 88889988876 567778888877  8899999999888876444

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.86  E-value=4.9e-24  Score=227.58  Aligned_cols=110  Identities=25%  Similarity=0.323  Sum_probs=85.7

Q ss_pred             cccccCCcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhh
Q 038658          156 EDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVN  235 (831)
Q Consensus       156 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~  235 (831)
                      +.+.+.-+|++|.+..       ......|..+..+.+|+.|+++.|.|.++|.+.+++.+|++|+|.+|.+..+|.++.
T Consensus        39 ~~~~~~v~L~~l~lsn-------n~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~  111 (1081)
T KOG0618|consen   39 EFVEKRVKLKSLDLSN-------NQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASIS  111 (1081)
T ss_pred             HHhhheeeeEEeeccc-------cccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHH
Confidence            3344455577764433       234566777778888999999999888888888889999999999998888999999


Q ss_pred             ccCCccEEeecCcCccccccccccCcccccccccCCCC
Q 038658          236 KLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTD  273 (831)
Q Consensus       236 ~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~  273 (831)
                      .+++|++||+++|. ...+|..+..+..+..+..++|.
T Consensus       112 ~lknl~~LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N~  148 (1081)
T KOG0618|consen  112 ELKNLQYLDLSFNH-FGPIPLVIEVLTAEEELAASNNE  148 (1081)
T ss_pred             hhhcccccccchhc-cCCCchhHHhhhHHHHHhhhcch
Confidence            99999999999865 66778878888888888887773

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.61  E-value=6e-15  Score=164.30  Aligned_cols=78  Identities=22%  Similarity=0.266  Sum_probs=57.8

Q ss_pred             cceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcccccccccCC
Q 038658          192 QRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSN  271 (831)
Q Consensus       192 ~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~  271 (831)
                      ..-.+|+++++.++.+|..+.  .+|+.|++++|+++.+|..   +++|++|++++|. +..+|..   .++|+.|++++
T Consensus       201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~l---p~sL~~L~Ls~  271 (788)
T PRK15387        201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQ-LTSLPVL---PPGLLELSIFS  271 (788)
T ss_pred             CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCc-cCcccCc---ccccceeeccC
Confidence            345688999999988888775  4789999999999888853   5788888888864 5566653   35677777777


Q ss_pred             CCCccccc
Q 038658          272 TDSLEEMP  279 (831)
Q Consensus       272 ~~~~~~~p  279 (831)
                      |. +..+|
T Consensus       272 N~-L~~Lp  278 (788)
T PRK15387        272 NP-LTHLP  278 (788)
T ss_pred             Cc-hhhhh
Confidence            76 44444

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.56  E-value=8.1e-17  Score=156.46  Aligned_cols=100  Identities=26%  Similarity=0.343  Sum_probs=65.9

Q ss_pred             eEEEEeCCCCccccC-ccccCCCCCceeecCCCCCCcc-chhhhccCCccEEeecCcCcccccccc-ccCcccccccccC
Q 038658          194 LRVFSLCGYWISELP-DSIGDLRYLRYLNLSGTQIRTL-PESVNKLYNLHTLSLEGCRGLRKLCAG-MGNLIKLHHLNNS  270 (831)
Q Consensus       194 L~~L~L~~~~i~~lp-~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~l~  270 (831)
                      ...++|..|.|+.|| .+|+.+++||.||||+|+|+.| |.+|..|.+|-.|-+.+++.++.+|.+ |++|..|+.|.+.
T Consensus        69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN  148 (498)
T KOG4237|consen   69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN  148 (498)
T ss_pred             ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence            455667777777774 5667777777777777777766 667777777777766665567777765 6777777777776


Q ss_pred             CCCCccccc-CCCCCccccccccce
Q 038658          271 NTDSLEEMP-LGIGKLTCLQTLCNF  294 (831)
Q Consensus       271 ~~~~~~~~p-~~~~~L~~L~~L~~~  294 (831)
                      -|. +.-++ ..+..|.+|..|..+
T Consensus       149 an~-i~Cir~~al~dL~~l~lLsly  172 (498)
T KOG4237|consen  149 ANH-INCIRQDALRDLPSLSLLSLY  172 (498)
T ss_pred             hhh-hcchhHHHHHHhhhcchhccc
Confidence            665 33333 336666666666443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.53  E-value=1.2e-13  Score=154.10  Aligned_cols=196  Identities=24%  Similarity=0.255  Sum_probs=89.6

Q ss_pred             CcccEEeEcCCcCcccCCCCCCCcccEEEEccccCccccCCCCCccceEEEcCCCCccccccccccCCCCceeeccccch
Q 038658          473 PKLRELEVIGCSKLKGTFPEHLPALEMLVIGGCEELLVSITSLPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQ  552 (831)
Q Consensus       473 ~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (831)
                      ++|+.|.+.+ ++++ .+|..+++|+.|++++|.... .-...++|+.|++++|....                      
T Consensus       222 ~~L~~L~L~~-N~Lt-~LP~lp~~Lk~LdLs~N~Lts-LP~lp~sL~~L~Ls~N~L~~----------------------  276 (788)
T PRK15387        222 AHITTLVIPD-NNLT-SLPALPPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNPLTH----------------------  276 (788)
T ss_pred             cCCCEEEccC-CcCC-CCCCCCCCCcEEEecCCccCc-ccCcccccceeeccCCchhh----------------------
Confidence            3566666666 4555 566555666666666553211 11123455555555554221                      


Q ss_pred             hhccCCCCCCCCCCcEEEEccCCCcchhcccCCcccccCCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEec
Q 038658          553 VLLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLN  632 (831)
Q Consensus       553 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~  632 (831)
                            ++..+.+|+.|+++++. ++.   .|.    ..++|+.|++++ +++..++           .+|.+|+.|+++
T Consensus       277 ------Lp~lp~~L~~L~Ls~N~-Lt~---LP~----~p~~L~~LdLS~-N~L~~Lp-----------~lp~~L~~L~Ls  330 (788)
T PRK15387        277 ------LPALPSGLCKLWIFGNQ-LTS---LPV----LPPGLQELSVSD-NQLASLP-----------ALPSELCKLWAY  330 (788)
T ss_pred             ------hhhchhhcCEEECcCCc-ccc---ccc----cccccceeECCC-CccccCC-----------CCcccccccccc
Confidence                  11123445555555543 221   111    124555555555 2444332           122345555555


Q ss_pred             cCCCCcccccccCCCCCCCeEEEecCCCCccccCCCCCCCccEEEEecCCCCcccccccccCCCCCcCeEEEccCCCcce
Q 038658          633 DCKGLVKLPQSLLSLSSLREIEIYNCSSFVSFPEVALPSKVRSISIHRCDALKSLPEAWMCDANLSLEILTISRCHSLTY  712 (831)
Q Consensus       633 ~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~  712 (831)
                      +|.. +.+|..   ..+|+.|+|++| .++.+|.  .+++|+.|++++| .++.+|..     ..+|+.|++++| .++.
T Consensus       331 ~N~L-~~LP~l---p~~Lq~LdLS~N-~Ls~LP~--lp~~L~~L~Ls~N-~L~~LP~l-----~~~L~~LdLs~N-~Lt~  396 (788)
T PRK15387        331 NNQL-TSLPTL---PSGLQELSVSDN-QLASLPT--LPSELYKLWAYNN-RLTSLPAL-----PSGLKELIVSGN-RLTS  396 (788)
T ss_pred             cCcc-cccccc---ccccceEecCCC-ccCCCCC--CCcccceehhhcc-ccccCccc-----ccccceEEecCC-cccC
Confidence            5442 234421   134555555554 4444543  2445555555543 34444421     234555555554 3444


Q ss_pred             eccCCCCCCCceEEEecCCCCCcc
Q 038658          713 IAEVQLPPSLKNVVIRNCDNVRTL  736 (831)
Q Consensus       713 l~~~~~~~~L~~L~l~~c~~l~~l  736 (831)
                      +|.  .+++|+.|+++++ .++.+
T Consensus       397 LP~--l~s~L~~LdLS~N-~LssI  417 (788)
T PRK15387        397 LPV--LPSELKELMVSGN-RLTSL  417 (788)
T ss_pred             CCC--cccCCCEEEccCC-cCCCC
Confidence            442  2345555555553 34444

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.52  E-value=1.7e-16  Score=135.90  Aligned_cols=109  Identities=31%  Similarity=0.411  Sum_probs=81.6

Q ss_pred             ccccccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCcc-ccccccccC
Q 038658          182 HSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGL-RKLCAGMGN  260 (831)
Q Consensus       182 ~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~-~~lp~~i~~  260 (831)
                      ..+|+.+..+.+|++|++++|+|+++|.+++.+++||.|++.-|++..+|..|+.++-|++||+.+|+.. ..+|..|..
T Consensus        46 ~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~  125 (264)
T KOG0617|consen   46 TVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFY  125 (264)
T ss_pred             eecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhH
Confidence            3467777777777777777777777777777777777777777777777777777777777777776533 346777777


Q ss_pred             cccccccccCCCCCcccccCCCCCccccccc
Q 038658          261 LIKLHHLNNSNTDSLEEMPLGIGKLTCLQTL  291 (831)
Q Consensus       261 L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L  291 (831)
                      |..|+.|+++.|. ...+|.++++|++||.|
T Consensus       126 m~tlralyl~dnd-fe~lp~dvg~lt~lqil  155 (264)
T KOG0617|consen  126 MTTLRALYLGDND-FEILPPDVGKLTNLQIL  155 (264)
T ss_pred             HHHHHHHHhcCCC-cccCChhhhhhcceeEE
Confidence            7777777777776 66777777777777777

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.52  E-value=2.7e-16  Score=134.61  Aligned_cols=105  Identities=30%  Similarity=0.450  Sum_probs=91.8

Q ss_pred             ccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCccccc
Q 038658          186 PKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLH  265 (831)
Q Consensus       186 ~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~  265 (831)
                      +.++.+.++..|-|++|.++.+|..|..+++|++|++++|+|+++|.+++.+++|++|++.-|+ +..+|.+||.++.|+
T Consensus        27 ~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~le  105 (264)
T KOG0617|consen   27 PGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALE  105 (264)
T ss_pred             ccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhh
Confidence            4566788889999999999999999999999999999999999999999999999999999865 778999999999999


Q ss_pred             ccccCCCCCcc-cccCCCCCccccccc
Q 038658          266 HLNNSNTDSLE-EMPLGIGKLTCLQTL  291 (831)
Q Consensus       266 ~L~l~~~~~~~-~~p~~~~~L~~L~~L  291 (831)
                      +||+.+|+... .+|..|-.++.|+.|
T Consensus       106 vldltynnl~e~~lpgnff~m~tlral  132 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRAL  132 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHH
Confidence            99999987443 567666666666655

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.50  E-value=2.4e-14  Score=163.33  Aligned_cols=107  Identities=33%  Similarity=0.415  Sum_probs=91.6

Q ss_pred             CCcceEEEEeCCCC--ccccCcc-ccCCCCCceeecCCC-CCCccchhhhccCCccEEeecCcCccccccccccCccccc
Q 038658          190 KLQRLRVFSLCGYW--ISELPDS-IGDLRYLRYLNLSGT-QIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLH  265 (831)
Q Consensus       190 ~l~~L~~L~L~~~~--i~~lp~~-~~~l~~Lr~L~L~~~-~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~  265 (831)
                      ..+.|++|-+.+|.  +..++.. |..++.||+|||++| .+..+|++|++|.+||+|++++ +.+..+|.++++|++|.
T Consensus       543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~  621 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLI  621 (889)
T ss_pred             CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhh
Confidence            45579999999986  6677544 688999999999987 5789999999999999999999 45889999999999999


Q ss_pred             ccccCCCCCcccccCCCCCccccccccceEec
Q 038658          266 HLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVG  297 (831)
Q Consensus       266 ~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~  297 (831)
                      +|++..+.....+|..+..|++||+|..+...
T Consensus       622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             eeccccccccccccchhhhcccccEEEeeccc
Confidence            99999998777777667779999999655443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.48  E-value=1.5e-15  Score=147.83  Aligned_cols=109  Identities=28%  Similarity=0.328  Sum_probs=92.7

Q ss_pred             cccccccc-CCcceEEEEeCCCCcccc-CccccCCCCCceeecCC-CCCCccch-hhhccCCccEEeecCcCcccccccc
Q 038658          182 HSILPKLF-KLQRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSG-TQIRTLPE-SVNKLYNLHTLSLEGCRGLRKLCAG  257 (831)
Q Consensus       182 ~~~~~~~~-~l~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~-~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~  257 (831)
                      ..+|+..| .+++||.|||++|.|+.| |++|..+..|-.|-+.+ |+|+.+|+ .|++|..|+.|.+.-|...-...+.
T Consensus        80 ~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~a  159 (498)
T KOG4237|consen   80 SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDA  159 (498)
T ss_pred             ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHH
Confidence            45677777 999999999999999999 99999999988877776 89999995 6799999999999987655555667


Q ss_pred             ccCcccccccccCCCCCcccccC-CCCCccccccc
Q 038658          258 MGNLIKLHHLNNSNTDSLEEMPL-GIGKLTCLQTL  291 (831)
Q Consensus       258 i~~L~~L~~L~l~~~~~~~~~p~-~~~~L~~L~~L  291 (831)
                      +..|++|..|.+..|. +..++. .+..+..++++
T Consensus       160 l~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tl  193 (498)
T KOG4237|consen  160 LRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTL  193 (498)
T ss_pred             HHHhhhcchhcccchh-hhhhccccccchhccchH
Confidence            9999999999999997 777776 48888888877

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.39  E-value=5e-13  Score=150.28  Aligned_cols=82  Identities=20%  Similarity=0.291  Sum_probs=48.2

Q ss_pred             ceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcccccccccCCC
Q 038658          193 RLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNT  272 (831)
Q Consensus       193 ~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~  272 (831)
                      +..+|+++++.++.+|..+.  .+|+.|+|++|.++.+|..+.  .+|++|++++|. +..+|..+.  .+|+.|++++|
T Consensus       179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~N  251 (754)
T PRK15370        179 NKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELSIN  251 (754)
T ss_pred             CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECcCC
Confidence            34566666666666665543  456666666666666665543  366666666654 445565443  35666666666


Q ss_pred             CCcccccCCC
Q 038658          273 DSLEEMPLGI  282 (831)
Q Consensus       273 ~~~~~~p~~~  282 (831)
                      . +..+|..+
T Consensus       252 ~-L~~LP~~l  260 (754)
T PRK15370        252 R-ITELPERL  260 (754)
T ss_pred             c-cCcCChhH
Confidence            5 44555443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.30  E-value=4.8e-12  Score=142.45  Aligned_cols=90  Identities=16%  Similarity=0.286  Sum_probs=72.3

Q ss_pred             cceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcccccccccCC
Q 038658          192 QRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSN  271 (831)
Q Consensus       192 ~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~  271 (831)
                      +.|+.|+|++|.++.+|..+.  .+|++|++++|.++.+|..+.  .+|+.|++++|. +..+|..+.  .+|+.|++++
T Consensus       199 ~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~  271 (754)
T PRK15370        199 EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR-ITELPERLP--SALQSLDLFH  271 (754)
T ss_pred             cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCc-cCcCChhHh--CCCCEEECcC
Confidence            468999999999999988765  589999999999999998664  479999999976 667887764  5899999998


Q ss_pred             CCCcccccCCCCCccccccc
Q 038658          272 TDSLEEMPLGIGKLTCLQTL  291 (831)
Q Consensus       272 ~~~~~~~p~~~~~L~~L~~L  291 (831)
                      |. +..+|..+.  .+|+.|
T Consensus       272 N~-L~~LP~~l~--~sL~~L  288 (754)
T PRK15370        272 NK-ISCLPENLP--EELRYL  288 (754)
T ss_pred             Cc-cCccccccC--CCCcEE
Confidence            87 667776553  345555

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.08  E-value=2.1e-12  Score=127.26  Aligned_cols=232  Identities=19%  Similarity=0.263  Sum_probs=104.1

Q ss_pred             CcccEEeEcCCcCccc----CCCCCCCcccEEEEccccCccccC-----CCCCccceEEEcCCCCccccccccccCCCCc
Q 038658          473 PKLRELEVIGCSKLKG----TFPEHLPALEMLVIGGCEELLVSI-----TSLPALSKLEIGGCKKVVWRSETDHLGSQNS  543 (831)
Q Consensus       473 ~~L~~L~l~~c~~l~~----~~p~~l~~L~~L~l~~~~~l~~~~-----~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  543 (831)
                      ..|+.|.+++|.....    .+-...|++++|.+.+|..++...     ..++.|+.+++..|..++.....        
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk--------  209 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLK--------  209 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHH--------
Confidence            3578888888754331    222345666666666666443221     12555666666555544422110        


Q ss_pred             eeeccccchhhccCCCCCCCCCCcEEEEccCCCcchhcccCCcccccCCCccEEeeecCCCcccchhhhhhhHhhhhccc
Q 038658          544 VVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELS  623 (831)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~  623 (831)
                                    .+...+++|++|.++-|+..+.  .....+..+...++.+...+|..+..   +.   +..+....
T Consensus       210 --------------~la~gC~kL~~lNlSwc~qi~~--~gv~~~~rG~~~l~~~~~kGC~e~~l---e~---l~~~~~~~  267 (483)
T KOG4341|consen  210 --------------YLAEGCRKLKYLNLSWCPQISG--NGVQALQRGCKELEKLSLKGCLELEL---EA---LLKAAAYC  267 (483)
T ss_pred             --------------HHHHhhhhHHHhhhccCchhhc--CcchHHhccchhhhhhhhcccccccH---HH---HHHHhccC
Confidence                          1122355555555555554432  01112223344444444444433221   10   11111111


Q ss_pred             CCccEEEeccCCCCcccc--cccCCCCCCCeEEEecCCCCccccCCCC---CCCccEEEEecCCCCcccccccccCCCCC
Q 038658          624 CRLEYLLLNDCKGLVKLP--QSLLSLSSLREIEIYNCSSFVSFPEVAL---PSKVRSISIHRCDALKSLPEAWMCDANLS  698 (831)
Q Consensus       624 ~~L~~L~l~~~~~~~~l~--~~l~~l~~L~~L~L~~~~~l~~l~~~~~---~~~L~~L~l~~c~~l~~l~~~~~~~~l~~  698 (831)
                      .-+-++++.+|..++...  ..-..+..|+.|+.++|..+++.+-+.+   .++|+.|.+++|..++..-....+.+++.
T Consensus       268 ~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~  347 (483)
T KOG4341|consen  268 LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPH  347 (483)
T ss_pred             hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChh
Confidence            123344444554443321  1112345566666666655444332222   45666666666665555443333344556


Q ss_pred             cCeEEEccCCCcceec---cCCCCCCCceEEEecCCCCC
Q 038658          699 LEILTISRCHSLTYIA---EVQLPPSLKNVVIRNCDNVR  734 (831)
Q Consensus       699 L~~L~l~~c~~l~~l~---~~~~~~~L~~L~l~~c~~l~  734 (831)
                      |+.+++.+|..+.+-.   .....+.|+.+.++.|..++
T Consensus       348 Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~it  386 (483)
T KOG4341|consen  348 LERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELIT  386 (483)
T ss_pred             hhhhcccccceehhhhHhhhccCCchhccCChhhhhhhh
Confidence            6666666554433220   00223455555555555444

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.97  E-value=2.7e-11  Score=127.13  Aligned_cols=84  Identities=25%  Similarity=0.269  Sum_probs=52.8

Q ss_pred             CCcceEEEEeCCCCcc-----ccCccccCCCCCceeecCCCCCCc-------cchhhhccCCccEEeecCcCcccccccc
Q 038658          190 KLQRLRVFSLCGYWIS-----ELPDSIGDLRYLRYLNLSGTQIRT-------LPESVNKLYNLHTLSLEGCRGLRKLCAG  257 (831)
Q Consensus       190 ~l~~L~~L~L~~~~i~-----~lp~~~~~l~~Lr~L~L~~~~i~~-------lp~~i~~L~~L~~L~l~~~~~~~~lp~~  257 (831)
                      .+..|++|+++++.++     .++..+...+.|++|+++++.+..       ++..+.++++|+.|++++|......+..
T Consensus        21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  100 (319)
T cd00116          21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV  100 (319)
T ss_pred             HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence            5666777777777763     345555666777777777766552       2345566677777777776654444444


Q ss_pred             ccCccc---ccccccCCCC
Q 038658          258 MGNLIK---LHHLNNSNTD  273 (831)
Q Consensus       258 i~~L~~---L~~L~l~~~~  273 (831)
                      +..+.+   |++|++++|.
T Consensus       101 ~~~l~~~~~L~~L~ls~~~  119 (319)
T cd00116         101 LESLLRSSSLQELKLNNNG  119 (319)
T ss_pred             HHHHhccCcccEEEeeCCc
Confidence            544444   7777777665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.96  E-value=8.2e-12  Score=123.24  Aligned_cols=110  Identities=22%  Similarity=0.276  Sum_probs=64.0

Q ss_pred             ceeEEEEecCCCCCCCC---CCCCCCCcceEEeccccCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCC
Q 038658          392 NLVTLKFEDCGMCTTLP---SVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQG  468 (831)
Q Consensus       392 ~L~~L~l~~~~~~~~~~---~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  468 (831)
                      .|+.|.+.+|.-.+.-+   ....+|++++|.+.+|..+++..-...+    ..+++|+.|.+..|.+++.......   
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla----~~C~~l~~l~L~~c~~iT~~~Lk~l---  211 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLA----RYCRKLRHLNLHSCSSITDVSLKYL---  211 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHH----HhcchhhhhhhcccchhHHHHHHHH---
Confidence            46666777666554433   2356778888877777655443211111    2366777777777666655443322   


Q ss_pred             CCCCCcccEEeEcCCcCccc----CCCCCCCcccEEEEccccCc
Q 038658          469 VEGFPKLRELEVIGCSKLKG----TFPEHLPALEMLVIGGCEEL  508 (831)
Q Consensus       469 ~~~~~~L~~L~l~~c~~l~~----~~p~~l~~L~~L~l~~~~~l  508 (831)
                      ..++++|++|+++.|+.+++    .+..+...++.+..++|...
T Consensus       212 a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~  255 (483)
T KOG4341|consen  212 AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL  255 (483)
T ss_pred             HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc
Confidence            34678888888888877764    22334445555555555543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.90  E-value=7.9e-11  Score=123.63  Aligned_cols=117  Identities=17%  Similarity=0.055  Sum_probs=72.4

Q ss_pred             ccccCCcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCccc-------cCccccCCCCCceeecCCCCCC-
Q 038658          157 DLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISE-------LPDSIGDLRYLRYLNLSGTQIR-  228 (831)
Q Consensus       157 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~-------lp~~~~~l~~Lr~L~L~~~~i~-  228 (831)
                      .+..+.+++.+.+.+..-..  .-...++..+...+.++.|+++++.+..       ++..+..+.+|++|++++|.+. 
T Consensus        18 ~~~~l~~L~~l~l~~~~l~~--~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~   95 (319)
T cd00116          18 LLPKLLCLQVLRLEGNTLGE--EAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP   95 (319)
T ss_pred             HHHHHhhccEEeecCCCCcH--HHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh
Confidence            34455567777554432100  0012244444567778888888877652       2455667888888888888876 


Q ss_pred             ccchhhhccCC---ccEEeecCcCccc----cccccccCc-ccccccccCCCCCc
Q 038658          229 TLPESVNKLYN---LHTLSLEGCRGLR----KLCAGMGNL-IKLHHLNNSNTDSL  275 (831)
Q Consensus       229 ~lp~~i~~L~~---L~~L~l~~~~~~~----~lp~~i~~L-~~L~~L~l~~~~~~  275 (831)
                      ..+..+..+.+   |++|++++|....    .+...+..+ ++|+.|++++|.+.
T Consensus        96 ~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~  150 (319)
T cd00116          96 DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE  150 (319)
T ss_pred             hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence            44555555555   8888888876431    233445666 78888888888733

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.88  E-value=1.5e-10  Score=118.77  Aligned_cols=180  Identities=22%  Similarity=0.306  Sum_probs=122.2

Q ss_pred             ccccccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCc
Q 038658          182 HSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNL  261 (831)
Q Consensus       182 ~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L  261 (831)
                      .++|..+..+-.|..+.|..|.+..+|.+++++..|.+|||+.|++..+|..++.|+ |++|-+++| .++.+|.+++.+
T Consensus        88 ~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~  165 (722)
T KOG0532|consen   88 SELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLL  165 (722)
T ss_pred             ccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC-ccccCCcccccc
Confidence            456666667777777888888888888888888888888888888888888777765 778878775 477788888877


Q ss_pred             ccccccccCCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEee
Q 038658          262 IKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWT  341 (831)
Q Consensus       262 ~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~  341 (831)
                      ..|.+|+.+.|. +..+|..++.|++|+.|...                                             .|
T Consensus       166 ~tl~~ld~s~ne-i~slpsql~~l~slr~l~vr---------------------------------------------Rn  199 (722)
T KOG0532|consen  166 PTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVR---------------------------------------------RN  199 (722)
T ss_pred             hhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHh---------------------------------------------hh
Confidence            888888888887 66777777777777777211                                             11


Q ss_pred             cCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCCC---CCCCCCcce
Q 038658          342 NSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPS---VGQLPSLKH  418 (831)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~~---l~~l~~L~~  418 (831)
                      ..            ...++.+. .-.|..|+++.|++..+|..+..  ++.|++|.|.+|.+......   -|...--++
T Consensus       200 ~l------------~~lp~El~-~LpLi~lDfScNkis~iPv~fr~--m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKy  264 (722)
T KOG0532|consen  200 HL------------EDLPEELC-SLPLIRLDFSCNKISYLPVDFRK--MRHLQVLQLENNPLQSPPAQICEKGKVHIFKY  264 (722)
T ss_pred             hh------------hhCCHHHh-CCceeeeecccCceeecchhhhh--hhhheeeeeccCCCCCChHHHHhccceeeeee
Confidence            10            01122222 12466777777777777877765  77888888888776543322   233344455


Q ss_pred             EEeccc
Q 038658          419 LAVRRM  424 (831)
Q Consensus       419 L~L~~~  424 (831)
                      |+...|
T Consensus       265 L~~qA~  270 (722)
T KOG0532|consen  265 LSTQAC  270 (722)
T ss_pred             ecchhc
Confidence            666555

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.79  E-value=2.6e-08  Score=102.00  Aligned_cols=16  Identities=38%  Similarity=0.588  Sum_probs=7.6

Q ss_pred             ccEEeeecCCCcccch
Q 038658          594 LKRLTIGWCPTLQSLV  609 (831)
Q Consensus       594 L~~L~l~~c~~l~~l~  609 (831)
                      |++|.+++|++++.+|
T Consensus        74 LtsL~Lsnc~nLtsLP   89 (426)
T PRK15386         74 LTEITIENCNNLTTLP   89 (426)
T ss_pred             CcEEEccCCCCcccCC
Confidence            4555555554444443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.78  E-value=4.3e-09  Score=95.98  Aligned_cols=131  Identities=27%  Similarity=0.278  Sum_probs=52.7

Q ss_pred             cccccCCcceEEccccccCCCccccccccccccc-CCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhh
Q 038658          156 EDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLF-KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESV  234 (831)
Q Consensus       156 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i  234 (831)
                      +...+..++|.|.+.+.      .+  .....+. .+.+|++|+|++|.|+.++ .+..+++|++|++++|.|+++++.+
T Consensus        13 ~~~~n~~~~~~L~L~~n------~I--~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l   83 (175)
T PF14580_consen   13 AQYNNPVKLRELNLRGN------QI--STIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGL   83 (175)
T ss_dssp             -------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHH
T ss_pred             ccccccccccccccccc------cc--ccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccch
Confidence            34445556666644332      11  1234454 5788999999999999884 6888999999999999999997666


Q ss_pred             -hccCCccEEeecCcCcccccc--ccccCcccccccccCCCCCcccccC----CCCCccccccccceEec
Q 038658          235 -NKLYNLHTLSLEGCRGLRKLC--AGMGNLIKLHHLNNSNTDSLEEMPL----GIGKLTCLQTLCNFVVG  297 (831)
Q Consensus       235 -~~L~~L~~L~l~~~~~~~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~----~~~~L~~L~~L~~~~~~  297 (831)
                       ..+++|++|++++|. +..+-  ..+..+++|++|++.+|. +...+.    -+..+++|+.|+...+.
T Consensus        84 ~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V~  151 (175)
T PF14580_consen   84 DKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDVT  151 (175)
T ss_dssp             HHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred             HHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEcc
Confidence             478999999999875 43332  347788999999999998 333332    26778888888655444

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.77  E-value=2e-08  Score=102.72  Aligned_cols=160  Identities=23%  Similarity=0.410  Sum_probs=106.8

Q ss_pred             CCccEEEeccCCCCcccccccCCCCCCCeEEEecCCCCccccCCCCCCCccEEEEecCCCCcccccccccCCCCCcCeEE
Q 038658          624 CRLEYLLLNDCKGLVKLPQSLLSLSSLREIEIYNCSSFVSFPEVALPSKVRSISIHRCDALKSLPEAWMCDANLSLEILT  703 (831)
Q Consensus       624 ~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~  703 (831)
                      .+++.|++++| .++.+|.   -.++|++|.+++|..++.+|. .++++|+.|.+++|..+..+|        .+|+.|+
T Consensus        52 ~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~-~LP~nLe~L~Ls~Cs~L~sLP--------~sLe~L~  118 (426)
T PRK15386         52 RASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPG-SIPEGLEKLTVCHCPEISGLP--------ESVRSLE  118 (426)
T ss_pred             cCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCc-hhhhhhhheEccCcccccccc--------cccceEE
Confidence            57999999999 5777772   235799999999999988885 357899999999998887765        3577777


Q ss_pred             EccCCCcceeccCCCCCCCceEEEecCCCCCccccccCccCCcccccCccccceEEEecCCCcccccchhhhhhhhhccc
Q 038658          704 ISRCHSLTYIAEVQLPPSLKNVVIRNCDNVRTLTVEEGIQSSSSRRYTSSLLEHLHIESCPSLTCIFSKNELLATLESLE  783 (831)
Q Consensus       704 l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~l~~~~L~~L~i~~c~~l~~i~~~~~~~~~l~~l~  783 (831)
                      +.+ .....+.  .+|++|++|.+.+++.......+..+       -++  |++|+|++|..+..              |
T Consensus       119 L~~-n~~~~L~--~LPssLk~L~I~~~n~~~~~~lp~~L-------PsS--Lk~L~Is~c~~i~L--------------P  172 (426)
T PRK15386        119 IKG-SATDSIK--NVPNGLTSLSINSYNPENQARIDNLI-------SPS--LKTLSLTGCSNIIL--------------P  172 (426)
T ss_pred             eCC-CCCcccc--cCcchHhheecccccccccccccccc-------CCc--ccEEEecCCCcccC--------------c
Confidence            764 3333333  56788999998654422111112111       134  99999999986642              3


Q ss_pred             cCCCCCCcCeeEEccCC--chhhhhhcCCCCCCCceEEecCCCCC
Q 038658          784 VGNLPPSLKSLEVLSCS--KLESIAERLDNNTSLETITIISCKNL  826 (831)
Q Consensus       784 ~~~l~~~L~~L~l~~~~--~l~~l~~~~~~l~~L~~L~i~~C~~l  826 (831)
                       ..+|.+|+.|.++.+.  .++.....+.  +++ .|.+.+|-++
T Consensus       173 -~~LP~SLk~L~ls~n~~~sLeI~~~sLP--~nl-~L~f~n~lkL  213 (426)
T PRK15386        173 -EKLPESLQSITLHIEQKTTWNISFEGFP--DGL-DIDLQNSVLL  213 (426)
T ss_pred             -ccccccCcEEEecccccccccCcccccc--ccc-Eechhhhccc
Confidence             4478899999998653  1111111121  344 7777777543

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=98.77  E-value=7.3e-10  Score=113.99  Aligned_cols=69  Identities=35%  Similarity=0.647  Sum_probs=56.5

Q ss_pred             CchhcccccCcCCCC---CCCCchHHHHhccccCChhhhhHhhhhCCCCCCCccCHHHHHHHHHHcCCcCCC
Q 038658            1 DWEGVLSCNIWDLPE---ERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWSAVGFLDHR   69 (831)
Q Consensus         1 ~W~~~l~~~~~~~~~---~~~~i~~~L~lSY~~L~~~~k~cfl~~~~fp~~~~i~~~~Li~~wi~~G~i~~~   69 (831)
                      +|+++++...+...+   ....++.++++||+.||+++|.||+|||+||+++.|+++.|+++|++||||...
T Consensus       214 ~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~  285 (287)
T PF00931_consen  214 EWEEALEELENSLRESRDYDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK  285 (287)
T ss_dssp             SHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred             ccccccccccccccccccccccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence            588888765444322   346799999999999999999999999999999999999999999999999764

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.69  E-value=1.2e-08  Score=110.13  Aligned_cols=102  Identities=32%  Similarity=0.474  Sum_probs=87.0

Q ss_pred             ccCCcceEEEEeCCCCccccCccccCCC-CCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcccccc
Q 038658          188 LFKLQRLRVFSLCGYWISELPDSIGDLR-YLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHH  266 (831)
Q Consensus       188 ~~~l~~L~~L~L~~~~i~~lp~~~~~l~-~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~  266 (831)
                      +..++.++.|++.++.+.++|.....+. +|++|++++|.+..+|..++.+++|+.|++++|. +..+|...+.+++|+.
T Consensus       112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~  190 (394)
T COG4886         112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNN  190 (394)
T ss_pred             hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhh
Confidence            3356789999999999999988888885 9999999999999998889999999999999975 7788887778999999


Q ss_pred             cccCCCCCcccccCCCCCccccccc
Q 038658          267 LNNSNTDSLEEMPLGIGKLTCLQTL  291 (831)
Q Consensus       267 L~l~~~~~~~~~p~~~~~L~~L~~L  291 (831)
                      |++++|. +..+|..++.+..|++|
T Consensus       191 L~ls~N~-i~~l~~~~~~~~~L~~l  214 (394)
T COG4886         191 LDLSGNK-ISDLPPEIELLSALEEL  214 (394)
T ss_pred             eeccCCc-cccCchhhhhhhhhhhh
Confidence            9999998 78888777666667776

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.67  E-value=9.5e-10  Score=113.05  Aligned_cols=173  Identities=24%  Similarity=0.234  Sum_probs=141.1

Q ss_pred             CCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCccccccccc
Q 038658          190 KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNN  269 (831)
Q Consensus       190 ~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l  269 (831)
                      .+..-...||+.|++..+|..++.+..|..|.|+.|.|..+|..+++|..|.+||++.|. +..+|..+..|+ |+.|-+
T Consensus        73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~  150 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIV  150 (722)
T ss_pred             cccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEE
Confidence            566667889999999999999999999999999999999999999999999999999965 788999988885 899999


Q ss_pred             CCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCCh
Q 038658          270 SNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSL  349 (831)
Q Consensus       270 ~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~  349 (831)
                      ++|+ ++.+|.+++.+..|..|...                                             .|..      
T Consensus       151 sNNk-l~~lp~~ig~~~tl~~ld~s---------------------------------------------~nei------  178 (722)
T KOG0532|consen  151 SNNK-LTSLPEEIGLLPTLAHLDVS---------------------------------------------KNEI------  178 (722)
T ss_pred             ecCc-cccCCcccccchhHHHhhhh---------------------------------------------hhhh------
Confidence            9998 89999999977766666221                                             1111      


Q ss_pred             hhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCCCCCCCCCcceEEecccc
Q 038658          350 REAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHLAVRRMS  425 (831)
Q Consensus       350 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~  425 (831)
                            ...+..+..+..|+.|.+..|....+|..+..   -.|.+||++.|++....-.+.+|..|++|.|.+++
T Consensus       179 ------~slpsql~~l~slr~l~vrRn~l~~lp~El~~---LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNP  245 (722)
T KOG0532|consen  179 ------QSLPSQLGYLTSLRDLNVRRNHLEDLPEELCS---LPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP  245 (722)
T ss_pred             ------hhchHHhhhHHHHHHHHHhhhhhhhCCHHHhC---CceeeeecccCceeecchhhhhhhhheeeeeccCC
Confidence                  01223345556788888999999999988763   56899999988876544489999999999998765

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.65  E-value=8e-09  Score=94.19  Aligned_cols=81  Identities=35%  Similarity=0.480  Sum_probs=29.5

Q ss_pred             CCcceEEEEeCCCCccccCcccc-CCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccc-cCccccccc
Q 038658          190 KLQRLRVFSLCGYWISELPDSIG-DLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGM-GNLIKLHHL  267 (831)
Q Consensus       190 ~l~~L~~L~L~~~~i~~lp~~~~-~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i-~~L~~L~~L  267 (831)
                      +...++.|+|++|.|+.+ +.++ .+.+|++|++++|.|+.++ .+..+++|++|++++|. +..++.++ ..+++|++|
T Consensus        17 n~~~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTI-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQEL   93 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred             cccccccccccccccccc-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccchHHhCCcCCEE
Confidence            556789999999999988 3565 6899999999999999985 68889999999999976 66676555 468999999


Q ss_pred             ccCCCC
Q 038658          268 NNSNTD  273 (831)
Q Consensus       268 ~l~~~~  273 (831)
                      ++++|.
T Consensus        94 ~L~~N~   99 (175)
T PF14580_consen   94 YLSNNK   99 (175)
T ss_dssp             E-TTS-
T ss_pred             ECcCCc
Confidence            999997

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=2.6e-08  Score=99.59  Aligned_cols=84  Identities=21%  Similarity=0.158  Sum_probs=44.3

Q ss_pred             CCcceEEEEeCCCCccccCccc--cCCCCCceeecCCCCCC--ccchhhhccCCccEEeecCcCccccccccccCccccc
Q 038658          190 KLQRLRVFSLCGYWISELPDSI--GDLRYLRYLNLSGTQIR--TLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLH  265 (831)
Q Consensus       190 ~l~~L~~L~L~~~~i~~lp~~~--~~l~~Lr~L~L~~~~i~--~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~  265 (831)
                      .+++|+.|+|+.|.+....++.  ..+.+|+.|.|+.|.++  ++-.....+++|+.|+|.+|..+..-.....-+..|+
T Consensus       170 qLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~  249 (505)
T KOG3207|consen  170 QLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQ  249 (505)
T ss_pred             hcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHh
Confidence            5666666666666654332111  34566666666666655  3333344556666666666542222222234455666


Q ss_pred             ccccCCCC
Q 038658          266 HLNNSNTD  273 (831)
Q Consensus       266 ~L~l~~~~  273 (831)
                      .|+|++|.
T Consensus       250 ~LdLs~N~  257 (505)
T KOG3207|consen  250 ELDLSNNN  257 (505)
T ss_pred             hccccCCc
Confidence            66666665

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.55  E-value=9e-08  Score=71.36  Aligned_cols=58  Identities=29%  Similarity=0.505  Sum_probs=44.8

Q ss_pred             cceEEEEeCCCCccccC-ccccCCCCCceeecCCCCCCccc-hhhhccCCccEEeecCcC
Q 038658          192 QRLRVFSLCGYWISELP-DSIGDLRYLRYLNLSGTQIRTLP-ESVNKLYNLHTLSLEGCR  249 (831)
Q Consensus       192 ~~L~~L~L~~~~i~~lp-~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~  249 (831)
                      ++|++|++++|.++.+| ..|..+++|++|++++|.++.+| ..+.++++|++|++++|.
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            36778888888888875 56678888888888888888775 466888888888888764

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.48  E-value=1.4e-07  Score=101.93  Aligned_cols=125  Identities=26%  Similarity=0.347  Sum_probs=100.2

Q ss_pred             cccCCcceEEccccccCCCcccccccccccccCCc-ceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhc
Q 038658          158 LYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQ-RLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNK  236 (831)
Q Consensus       158 ~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~  236 (831)
                      ....+.+..|.+...       ....+++....+. +|+.|++++|.+..+|..+..+++|+.|++++|++.++|...+.
T Consensus       112 ~~~~~~l~~L~l~~n-------~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~  184 (394)
T COG4886         112 LLELTNLTSLDLDNN-------NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSN  184 (394)
T ss_pred             hhcccceeEEecCCc-------ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhh
Confidence            334456666654332       2345666666664 99999999999999998899999999999999999999998889


Q ss_pred             cCCccEEeecCcCccccccccccCcccccccccCCCCCcccccCCCCCccccccc
Q 038658          237 LYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTL  291 (831)
Q Consensus       237 L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L  291 (831)
                      +.+|+.|++++|. +..+|..++.+..|+.|.+++|. ....+..++++.++..+
T Consensus       185 ~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l  237 (394)
T COG4886         185 LSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGL  237 (394)
T ss_pred             hhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhccccccc
Confidence            9999999999965 88899888888889999999996 44455566666666665

>PLN03150 hypothetical protein; Provisional

Probab=98.46  E-value=1.8e-07  Score=105.66  Aligned_cols=93  Identities=26%  Similarity=0.350  Sum_probs=84.7

Q ss_pred             ceEEEEeCCCCcc-ccCccccCCCCCceeecCCCCCC-ccchhhhccCCccEEeecCcCccccccccccCcccccccccC
Q 038658          193 RLRVFSLCGYWIS-ELPDSIGDLRYLRYLNLSGTQIR-TLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNS  270 (831)
Q Consensus       193 ~L~~L~L~~~~i~-~lp~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~  270 (831)
                      .++.|+|++|.+. .+|..++.+++|++|+|++|.+. .+|..++.+++|++|+|++|...+.+|..+++|++|++|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            4889999999987 67999999999999999999997 889999999999999999998888899999999999999999


Q ss_pred             CCCCcccccCCCCCc
Q 038658          271 NTDSLEEMPLGIGKL  285 (831)
Q Consensus       271 ~~~~~~~~p~~~~~L  285 (831)
                      +|.+.+.+|..++.+
T Consensus       499 ~N~l~g~iP~~l~~~  513 (623)
T PLN03150        499 GNSLSGRVPAALGGR  513 (623)
T ss_pred             CCcccccCChHHhhc
Confidence            999888999877653

>PLN03150 hypothetical protein; Provisional

Probab=98.44  E-value=2.6e-07  Score=104.27  Aligned_cols=103  Identities=27%  Similarity=0.397  Sum_probs=88.8

Q ss_pred             cccccccccccccCCcceEEEEeCCCCcc-ccCccccCCCCCceeecCCCCCC-ccchhhhccCCccEEeecCcCccccc
Q 038658          177 QGFLAHSILPKLFKLQRLRVFSLCGYWIS-ELPDSIGDLRYLRYLNLSGTQIR-TLPESVNKLYNLHTLSLEGCRGLRKL  254 (831)
Q Consensus       177 ~~~~~~~~~~~~~~l~~L~~L~L~~~~i~-~lp~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~~~~l  254 (831)
                      .+.+.+.+|..+..+++|+.|+|++|.+. .+|..++.+++|++|+|++|++. .+|..++++++|++|+|++|...+.+
T Consensus       427 ~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~i  506 (623)
T PLN03150        427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV  506 (623)
T ss_pred             CCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccC
Confidence            34566778888889999999999999987 77999999999999999999998 78999999999999999999988899


Q ss_pred             cccccCc-ccccccccCCCCCccccc
Q 038658          255 CAGMGNL-IKLHHLNNSNTDSLEEMP  279 (831)
Q Consensus       255 p~~i~~L-~~L~~L~l~~~~~~~~~p  279 (831)
                      |..++.+ .++..+++.+|..+...|
T Consensus       507 P~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        507 PAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             ChHHhhccccCceEEecCCccccCCC
Confidence            9988764 567788888886544443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.42  E-value=2.1e-08  Score=94.82  Aligned_cols=82  Identities=27%  Similarity=0.305  Sum_probs=54.0

Q ss_pred             CCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCccccccccc
Q 038658          190 KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNN  269 (831)
Q Consensus       190 ~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l  269 (831)
                      ..+.|+.|||++|.|+.+-+++.-++.+|+|++|+|.|..+-. +..|++|+.|||++|. +..+-..=.+|-|.+.|.+
T Consensus       282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEeeeeh
Confidence            4556777777777777777777777777777777777776633 6777777777777754 3333332335556666667


Q ss_pred             CCCC
Q 038658          270 SNTD  273 (831)
Q Consensus       270 ~~~~  273 (831)
                      ++|.
T Consensus       360 a~N~  363 (490)
T KOG1259|consen  360 AQNK  363 (490)
T ss_pred             hhhh
Confidence            6665

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.42  E-value=5e-08  Score=97.56  Aligned_cols=153  Identities=18%  Similarity=0.183  Sum_probs=77.0

Q ss_pred             CCCCcccEEeEcCCcCcccCCC-----CCCCcccEEEEccccC-----ccccCCCCCccceEEEcCCCCccccccccccC
Q 038658          470 EGFPKLRELEVIGCSKLKGTFP-----EHLPALEMLVIGGCEE-----LLVSITSLPALSKLEIGGCKKVVWRSETDHLG  539 (831)
Q Consensus       470 ~~~~~L~~L~l~~c~~l~~~~p-----~~l~~L~~L~l~~~~~-----l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  539 (831)
                      ..+.+|+.+.+.+|+ .. ..+     ..+++++.|+++.|--     +-.....+|+|+.|+++.|......+.     
T Consensus       118 sn~kkL~~IsLdn~~-V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s-----  190 (505)
T KOG3207|consen  118 SNLKKLREISLDNYR-VE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS-----  190 (505)
T ss_pred             hhHHhhhheeecCcc-cc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc-----
Confidence            357888888898863 32 222     3677788888877641     112344577777777777763321100     


Q ss_pred             CCCceeeccccchhhccCCCCCCCCCCcEEEEccCCCcchhcccCCcccccCCCccEEeeecCCCcccchhhhhhhHhhh
Q 038658          540 SQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQL  619 (831)
Q Consensus       540 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l  619 (831)
                                        ..-..+++|+.|.++.|.--   |.........+|+|+.|++...+.+... ...+      
T Consensus       191 ------------------~~~~~l~~lK~L~l~~CGls---~k~V~~~~~~fPsl~~L~L~~N~~~~~~-~~~~------  242 (505)
T KOG3207|consen  191 ------------------NTTLLLSHLKQLVLNSCGLS---WKDVQWILLTFPSLEVLYLEANEIILIK-ATST------  242 (505)
T ss_pred             ------------------cchhhhhhhheEEeccCCCC---HHHHHHHHHhCCcHHHhhhhccccccee-cchh------
Confidence                              01113566666666666521   1112222345566666666553211110 0111      


Q ss_pred             hcccCCccEEEeccCCCCccc-ccccCCCCCCCeEEEecC
Q 038658          620 CELSCRLEYLLLNDCKGLVKL-PQSLLSLSSLREIEIYNC  658 (831)
Q Consensus       620 ~~~~~~L~~L~l~~~~~~~~l-~~~l~~l~~L~~L~L~~~  658 (831)
                       ..++.|+.|+|++|+.+..- ....+.++.|+.|+++.|
T Consensus       243 -~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t  281 (505)
T KOG3207|consen  243 -KILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST  281 (505)
T ss_pred             -hhhhHHhhccccCCcccccccccccccccchhhhhcccc
Confidence             11234666666666544321 123445566666666655

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.39  E-value=2.6e-07  Score=68.88  Aligned_cols=58  Identities=33%  Similarity=0.442  Sum_probs=50.8

Q ss_pred             CCCceeecCCCCCCccch-hhhccCCccEEeecCcCcccccc-ccccCcccccccccCCCC
Q 038658          215 RYLRYLNLSGTQIRTLPE-SVNKLYNLHTLSLEGCRGLRKLC-AGMGNLIKLHHLNNSNTD  273 (831)
Q Consensus       215 ~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~l~~~~  273 (831)
                      ++|++|++++|+++.+|. .+.++++|++|++++|. +..+| ..|..+++|++|++++|.
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence            479999999999999985 77999999999999877 45554 568999999999999986

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.23  E-value=1.1e-06  Score=59.53  Aligned_cols=38  Identities=32%  Similarity=0.491  Sum_probs=17.2

Q ss_pred             ceEEEEeCCCCccccCccccCCCCCceeecCCCCCCcc
Q 038658          193 RLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTL  230 (831)
Q Consensus       193 ~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~l  230 (831)
                      +|++|++++|.|+.+|..+++|++|++|++++|.|+++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence            34444555554444444444444444444444444433

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.17  E-value=2.1e-08  Score=94.89  Aligned_cols=110  Identities=15%  Similarity=0.173  Sum_probs=49.4

Q ss_pred             CccEEEeccCCCCcccccccCCCCCCCeEEEecCCCCccccCCCC---CCCccEEEEecCCCCcccccccccCCCCCcCe
Q 038658          625 RLEYLLLNDCKGLVKLPQSLLSLSSLREIEIYNCSSFVSFPEVAL---PSKVRSISIHRCDALKSLPEAWMCDANLSLEI  701 (831)
Q Consensus       625 ~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~l~~~~~---~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~  701 (831)
                      .|+.|.+.++.....+...+..-.+|+.|+|+.|..++.......   ++.|.+|+++.|...+..-......--+.|..
T Consensus       211 kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~  290 (419)
T KOG2120|consen  211 KLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQ  290 (419)
T ss_pred             hhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhh
Confidence            455555555554444444455555566666666655443321111   45555555555544333322111111334555


Q ss_pred             EEEccCCCcceeccC----CCCCCCceEEEecCCCCC
Q 038658          702 LTISRCHSLTYIAEV----QLPPSLKNVVIRNCDNVR  734 (831)
Q Consensus       702 L~l~~c~~l~~l~~~----~~~~~L~~L~l~~c~~l~  734 (831)
                      |+++||...-.....    .-.|+|.+|++++|..++
T Consensus       291 LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~  327 (419)
T KOG2120|consen  291 LNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK  327 (419)
T ss_pred             hhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccC
Confidence            555554322111110    123455555555555554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.14  E-value=3.3e-07  Score=89.27  Aligned_cols=255  Identities=20%  Similarity=0.235  Sum_probs=141.6

Q ss_pred             cccCCcceEEEEeCCCCcc-----ccCccccCCCCCceeecCCC---C-CCccchh-------hhccCCccEEeecCcCc
Q 038658          187 KLFKLQRLRVFSLCGYWIS-----ELPDSIGDLRYLRYLNLSGT---Q-IRTLPES-------VNKLYNLHTLSLEGCRG  250 (831)
Q Consensus       187 ~~~~l~~L~~L~L~~~~i~-----~lp~~~~~l~~Lr~L~L~~~---~-i~~lp~~-------i~~L~~L~~L~l~~~~~  250 (831)
                      ....+..++.++|++|.+.     .+-..+.+.++||.-++++-   + ..++|+.       +-..++|++||||.|-.
T Consensus        25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~  104 (382)
T KOG1909|consen   25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF  104 (382)
T ss_pred             HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence            3346778899999999875     24455677789999999874   2 2255654       34556899999998754


Q ss_pred             ccccccc----ccCcccccccccCCCCCcccccCC-CCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccc
Q 038658          251 LRKLCAG----MGNLIKLHHLNNSNTDSLEEMPLG-IGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENA  325 (831)
Q Consensus       251 ~~~lp~~----i~~L~~L~~L~l~~~~~~~~~p~~-~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~  325 (831)
                      -..-++.    +.....|++|+|.+|. ++....+ ++.  .|..|                ..              ..
T Consensus       105 G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~--al~~l----------------~~--------------~k  151 (382)
T KOG1909|consen  105 GPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGR--ALFEL----------------AV--------------NK  151 (382)
T ss_pred             CccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHH--HHHHH----------------HH--------------Hh
Confidence            3333332    5677889999998887 4322211 111  11111                00              01


Q ss_pred             cccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCC-----ccCCCCCCCceeEEEEec
Q 038658          326 QLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFP-----IWLGDSSFSNLVTLKFED  400 (831)
Q Consensus       326 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p-----~~~~~~~~~~L~~L~l~~  400 (831)
                      .....+.|+++....|...+...       ...-..++.++.|+.+.+..|++..--     ..+.  .+++|+.|++.+
T Consensus       152 k~~~~~~Lrv~i~~rNrlen~ga-------~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~--~~~~LevLdl~D  222 (382)
T KOG1909|consen  152 KAASKPKLRVFICGRNRLENGGA-------TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALE--HCPHLEVLDLRD  222 (382)
T ss_pred             ccCCCcceEEEEeeccccccccH-------HHHHHHHHhccccceEEEecccccCchhHHHHHHHH--hCCcceeeeccc
Confidence            12334566677666665443311       112233555577777777776643211     1111  367788888888


Q ss_pred             CCCCCCC----C-CCCCCCCcceEEeccccCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcc
Q 038658          401 CGMCTTL----P-SVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKL  475 (831)
Q Consensus       401 ~~~~~~~----~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L  475 (831)
                      |.+...-    . .+..+++|+.|++.+|.. +.-+...+.......+|+|+.|.+.+...-..-. ..........|.|
T Consensus       223 Ntft~egs~~LakaL~s~~~L~El~l~dcll-~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~-~~la~~~~ek~dL  300 (382)
T KOG1909|consen  223 NTFTLEGSVALAKALSSWPHLRELNLGDCLL-ENEGAIAFVDALKESAPSLEVLELAGNEITRDAA-LALAACMAEKPDL  300 (382)
T ss_pred             chhhhHHHHHHHHHhcccchheeeccccccc-ccccHHHHHHHHhccCCCCceeccCcchhHHHHH-HHHHHHHhcchhh
Confidence            7765321    1 456677888888887742 2222111111112337888888877642111000 0000013347899


Q ss_pred             cEEeEcCCcCc
Q 038658          476 RELEVIGCSKL  486 (831)
Q Consensus       476 ~~L~l~~c~~l  486 (831)
                      +.|++++| .+
T Consensus       301 ~kLnLngN-~l  310 (382)
T KOG1909|consen  301 EKLNLNGN-RL  310 (382)
T ss_pred             HHhcCCcc-cc
Confidence            99999985 44

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.13  E-value=3.1e-07  Score=87.15  Aligned_cols=77  Identities=31%  Similarity=0.284  Sum_probs=58.4

Q ss_pred             cCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcccccccccCCCCCcccccCCCCCccccccc
Q 038658          212 GDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTL  291 (831)
Q Consensus       212 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L  291 (831)
                      .-.+.|..||||+|.|+.+.+++.-++.++.|++++|. +..+. .+..|.+|.+||+++|. +.++-..-.+|.+.++|
T Consensus       281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~-nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL  357 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-IRTVQ-NLAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTL  357 (490)
T ss_pred             chHhhhhhccccccchhhhhhhhhhccceeEEeccccc-eeeeh-hhhhcccceEeecccch-hHhhhhhHhhhcCEeee
Confidence            34567999999999999999999999999999999976 44443 38889999999999997 54443333344444444

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.10  E-value=1e-07  Score=90.43  Aligned_cols=181  Identities=22%  Similarity=0.246  Sum_probs=111.6

Q ss_pred             CCCcEEEEccCCCcchhcccCCcccccCCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEeccCCCCcccc--
Q 038658          564 PKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLP--  641 (831)
Q Consensus       564 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~--  641 (831)
                      ..|+.|++++-.-...   .-...+..+..|+.|.+.+. .+..-...      .+. --.+|+.|+++.|..++...  
T Consensus       185 sRlq~lDLS~s~it~s---tl~~iLs~C~kLk~lSlEg~-~LdD~I~~------~iA-kN~~L~~lnlsm~sG~t~n~~~  253 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVS---TLHGILSQCSKLKNLSLEGL-RLDDPIVN------TIA-KNSNLVRLNLSMCSGFTENALQ  253 (419)
T ss_pred             hhhHHhhcchhheeHH---HHHHHHHHHHhhhhcccccc-ccCcHHHH------HHh-ccccceeeccccccccchhHHH
Confidence            3588888876442221   12234566777888887773 33321100      001 11479999999998876532  


Q ss_pred             cccCCCCCCCeEEEecCCCCccccCCC---CCCCccEEEEecCCCC---cccccccccCCCCCcCeEEEccCCCcceec-
Q 038658          642 QSLLSLSSLREIEIYNCSSFVSFPEVA---LPSKVRSISIHRCDAL---KSLPEAWMCDANLSLEILTISRCHSLTYIA-  714 (831)
Q Consensus       642 ~~l~~l~~L~~L~L~~~~~l~~l~~~~---~~~~L~~L~l~~c~~l---~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~-  714 (831)
                      -.+.+|+.|.+|+|+-|...+..-...   .-++|..|+++||..-   ..+....  ..+|+|.+||+++|..++.-- 
T Consensus       254 ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~--~rcp~l~~LDLSD~v~l~~~~~  331 (419)
T KOG2120|consen  254 LLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLV--RRCPNLVHLDLSDSVMLKNDCF  331 (419)
T ss_pred             HHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHH--HhCCceeeeccccccccCchHH
Confidence            346789999999999996554432211   2578999999998532   1222222  348999999999998776411 


Q ss_pred             -cCCCCCCCceEEEecCCCCCccccccCccCCcccccCccccceEEEecCCC
Q 038658          715 -EVQLPPSLKNVVIRNCDNVRTLTVEEGIQSSSSRRYTSSLLEHLHIESCPS  765 (831)
Q Consensus       715 -~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~l~~~~L~~L~i~~c~~  765 (831)
                       +..-++.|++|.++.|..+-    |..+-+.  ...|+  |.+|++.+|-.
T Consensus       332 ~~~~kf~~L~~lSlsRCY~i~----p~~~~~l--~s~ps--l~yLdv~g~vs  375 (419)
T KOG2120|consen  332 QEFFKFNYLQHLSLSRCYDII----PETLLEL--NSKPS--LVYLDVFGCVS  375 (419)
T ss_pred             HHHHhcchheeeehhhhcCCC----hHHeeee--ccCcc--eEEEEeccccC
Confidence             11335789999999997663    3322220  01556  89999988743

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.08  E-value=4.4e-06  Score=56.58  Aligned_cols=39  Identities=36%  Similarity=0.530  Sum_probs=31.4

Q ss_pred             CCCceeecCCCCCCccchhhhccCCccEEeecCcCccccc
Q 038658          215 RYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKL  254 (831)
Q Consensus       215 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~l  254 (831)
                      ++|++|++++|+|+.+|..+++|++|++|++++|. +..+
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i   39 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDI   39 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBE
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCC
Confidence            47899999999999998889999999999999975 4444

...

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.98  E-value=6.2e-07  Score=87.45  Aligned_cols=247  Identities=21%  Similarity=0.263  Sum_probs=144.1

Q ss_pred             ccccCCCCCceeecCCCCCC-----ccchhhhccCCccEEeecCc---Ccccccccc-------ccCcccccccccCCCC
Q 038658          209 DSIGDLRYLRYLNLSGTQIR-----TLPESVNKLYNLHTLSLEGC---RGLRKLCAG-------MGNLIKLHHLNNSNTD  273 (831)
Q Consensus       209 ~~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~---~~~~~lp~~-------i~~L~~L~~L~l~~~~  273 (831)
                      +.+..+..+.+++|++|.+.     .+-+.+.+.++|+.-++++-   +....+|+.       +-..++|+.|+||.|.
T Consensus        24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA  103 (382)
T KOG1909|consen   24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA  103 (382)
T ss_pred             HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence            34567788999999999886     34566778889999998862   112234443       3455699999999997


Q ss_pred             CcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCChh--h
Q 038658          274 SLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLR--E  351 (831)
Q Consensus       274 ~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~  351 (831)
                      +-..-+++++.+                                         ++.+..|++|.+.+|.........  .
T Consensus       104 ~G~~g~~~l~~l-----------------------------------------l~s~~~L~eL~L~N~Glg~~ag~~l~~  142 (382)
T KOG1909|consen  104 FGPKGIRGLEEL-----------------------------------------LSSCTDLEELYLNNCGLGPEAGGRLGR  142 (382)
T ss_pred             cCccchHHHHHH-----------------------------------------HHhccCHHHHhhhcCCCChhHHHHHHH
Confidence            433333332111                                         222344445555444332110000  0


Q ss_pred             hhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCC---CCCCceeEEEEecCCCCCC-CC----CCCCCCCcceEEecc
Q 038658          352 AETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGD---SSFSNLVTLKFEDCGMCTT-LP----SVGQLPSLKHLAVRR  423 (831)
Q Consensus       352 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~---~~~~~L~~L~l~~~~~~~~-~~----~l~~l~~L~~L~L~~  423 (831)
                      ..............+.|+.+....|+....+.....   ...+.|+.+.+..|.+... +.    .+..+++|+.|+|++
T Consensus       143 al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~D  222 (382)
T KOG1909|consen  143 ALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRD  222 (382)
T ss_pred             HHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeeccc
Confidence            011111334456678999999999887665432110   1247888898888876421 11    467888999999887


Q ss_pred             ccCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcc--c------CCCCCCC
Q 038658          424 MSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLK--G------TFPEHLP  495 (831)
Q Consensus       424 ~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~--~------~~p~~l~  495 (831)
                      +..-.. +....+                              ..+..+|+|++|.+++|. ++  |      .+-...|
T Consensus       223 Ntft~e-gs~~La------------------------------kaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p  270 (382)
T KOG1909|consen  223 NTFTLE-GSVALA------------------------------KALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAP  270 (382)
T ss_pred             chhhhH-HHHHHH------------------------------HHhcccchheeecccccc-cccccHHHHHHHHhccCC
Confidence            532111 111111                              003356677777777773 22  1      1223567


Q ss_pred             cccEEEEccccCcc-------ccCCCCCccceEEEcCCCC
Q 038658          496 ALEMLVIGGCEELL-------VSITSLPALSKLEIGGCKK  528 (831)
Q Consensus       496 ~L~~L~l~~~~~l~-------~~~~~l~~L~~L~l~~~~~  528 (831)
                      +|+.|.+.+|....       ..+...|.|+.|++++|..
T Consensus       271 ~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  271 SLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             CCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            78888877776322       2344578889999998874

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.97  E-value=2.1e-06  Score=92.67  Aligned_cols=102  Identities=26%  Similarity=0.382  Sum_probs=77.9

Q ss_pred             ccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCccccc
Q 038658          186 PKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLH  265 (831)
Q Consensus       186 ~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~  265 (831)
                      ..+..++.|..|++.+|.|..+...+..+.+|++|++++|.|+.+ ..+..+..|+.|++++|. +..+ .++..+++|+
T Consensus        89 ~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~-i~~~-~~~~~l~~L~  165 (414)
T KOG0531|consen   89 NHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNL-ISDI-SGLESLKSLK  165 (414)
T ss_pred             cccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccCc-chhc-cCCccchhhh
Confidence            335578889999999999988865578899999999999999888 467778889999999875 4444 3466788999


Q ss_pred             ccccCCCCCcccccCC-CCCccccccc
Q 038658          266 HLNNSNTDSLEEMPLG-IGKLTCLQTL  291 (831)
Q Consensus       266 ~L~l~~~~~~~~~p~~-~~~L~~L~~L  291 (831)
                      .+++++|. +..+... ...+.+++.+
T Consensus       166 ~l~l~~n~-i~~ie~~~~~~~~~l~~l  191 (414)
T KOG0531|consen  166 LLDLSYNR-IVDIENDELSELISLEEL  191 (414)
T ss_pred             cccCCcch-hhhhhhhhhhhccchHHH
Confidence            99999987 4444432 4566666665

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.84  E-value=1.9e-06  Score=93.07  Aligned_cols=98  Identities=27%  Similarity=0.426  Sum_probs=78.1

Q ss_pred             CCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCccccccccc
Q 038658          190 KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNN  269 (831)
Q Consensus       190 ~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l  269 (831)
                      .+..++.+.++.|.+.++-..++.+++|.+|++.+|.|..+...+..+++|++|++++|. ++.+ .++..++.|+.|++
T Consensus        70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i-~~l~~l~~L~~L~l  147 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKL-EGLSTLTLLKELNL  147 (414)
T ss_pred             HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccc-cccc-cchhhccchhhhee
Confidence            455667777888888886566889999999999999999997668999999999999975 5555 34788888999999


Q ss_pred             CCCCCcccccCCCCCccccccc
Q 038658          270 SNTDSLEEMPLGIGKLTCLQTL  291 (831)
Q Consensus       270 ~~~~~~~~~p~~~~~L~~L~~L  291 (831)
                      ++|. +..+. ++..+++|+.+
T Consensus       148 ~~N~-i~~~~-~~~~l~~L~~l  167 (414)
T KOG0531|consen  148 SGNL-ISDIS-GLESLKSLKLL  167 (414)
T ss_pred             ccCc-chhcc-CCccchhhhcc
Confidence            9998 55443 45556666666

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.82  E-value=3.5e-06  Score=70.55  Aligned_cols=94  Identities=23%  Similarity=0.244  Sum_probs=75.5

Q ss_pred             ccccCCcceEEEEeCCCCccccCccc-cCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcccc
Q 038658          186 PKLFKLQRLRVFSLCGYWISELPDSI-GDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKL  264 (831)
Q Consensus       186 ~~~~~l~~L~~L~L~~~~i~~lp~~~-~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L  264 (831)
                      ..+.....|...+|++|.+..+|..| .+.+....|++++|.|.++|.++..++.|+.|+++.|. +...|+.|..|.+|
T Consensus        47 y~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l  125 (177)
T KOG4579|consen   47 YMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKL  125 (177)
T ss_pred             HHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhH
Confidence            33446677888899999999888887 45568889999999999999889999999999999875 66678888888899


Q ss_pred             cccccCCCCCcccccCC
Q 038658          265 HHLNNSNTDSLEEMPLG  281 (831)
Q Consensus       265 ~~L~l~~~~~~~~~p~~  281 (831)
                      -.|+..+|. ...+|.+
T Consensus       126 ~~Lds~~na-~~eid~d  141 (177)
T KOG4579|consen  126 DMLDSPENA-RAEIDVD  141 (177)
T ss_pred             HHhcCCCCc-cccCcHH
Confidence            889888887 5556644

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.55  E-value=5.5e-06  Score=69.45  Aligned_cols=98  Identities=20%  Similarity=0.256  Sum_probs=81.5

Q ss_pred             cceEEEEeCCCCccccCcc---ccCCCCCceeecCCCCCCccchhh-hccCCccEEeecCcCccccccccccCccccccc
Q 038658          192 QRLRVFSLCGYWISELPDS---IGDLRYLRYLNLSGTQIRTLPESV-NKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHL  267 (831)
Q Consensus       192 ~~L~~L~L~~~~i~~lp~~---~~~l~~Lr~L~L~~~~i~~lp~~i-~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L  267 (831)
                      +.+..+||+.|.+..+++.   +....+|...+|++|.+..+|+.+ .+.+-+++|++++|. +..+|..+..++.|+.|
T Consensus        27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSL  105 (177)
T ss_pred             HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhc
Confidence            3466788999987766544   467788999999999999999887 455689999999965 88999999999999999


Q ss_pred             ccCCCCCcccccCCCCCccccccc
Q 038658          268 NNSNTDSLEEMPLGIGKLTCLQTL  291 (831)
Q Consensus       268 ~l~~~~~~~~~p~~~~~L~~L~~L  291 (831)
                      +++.|. +...|.-+..|.+|-.|
T Consensus       106 Nl~~N~-l~~~p~vi~~L~~l~~L  128 (177)
T KOG4579|consen  106 NLRFNP-LNAEPRVIAPLIKLDML  128 (177)
T ss_pred             ccccCc-cccchHHHHHHHhHHHh
Confidence            999998 66778777777777776

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.41  E-value=4.3e-06  Score=89.25  Aligned_cols=93  Identities=27%  Similarity=0.305  Sum_probs=68.0

Q ss_pred             cccccCCcceEEEEeCCCCccccC------c-----------------------ccc---CCCCCceeecCCCCCCccch
Q 038658          185 LPKLFKLQRLRVFSLCGYWISELP------D-----------------------SIG---DLRYLRYLNLSGTQIRTLPE  232 (831)
Q Consensus       185 ~~~~~~l~~L~~L~L~~~~i~~lp------~-----------------------~~~---~l~~Lr~L~L~~~~i~~lp~  232 (831)
                      |-.++.++.||+|.|.++.+...-      .                       .|+   ....|.+-+.++|.+..+..
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~  181 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDE  181 (1096)
T ss_pred             CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHH
Confidence            667788999999999988764311      0                       011   01236677778888888888


Q ss_pred             hhhccCCccEEeecCcCccccccccccCcccccccccCCCCCcccccC
Q 038658          233 SVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPL  280 (831)
Q Consensus       233 ~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~  280 (831)
                      ++.-++.|+.|||++|.. ... +.+..+++|++||+++|. +..+|.
T Consensus       182 SLqll~ale~LnLshNk~-~~v-~~Lr~l~~LkhLDlsyN~-L~~vp~  226 (1096)
T KOG1859|consen  182 SLQLLPALESLNLSHNKF-TKV-DNLRRLPKLKHLDLSYNC-LRHVPQ  226 (1096)
T ss_pred             HHHHHHHhhhhccchhhh-hhh-HHHHhcccccccccccch-hccccc
Confidence            888899999999999763 333 368889999999999998 666663

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.28  E-value=2.3e-05  Score=87.60  Aligned_cols=237  Identities=20%  Similarity=0.299  Sum_probs=128.2

Q ss_pred             CCCCCcEEEEccCCCcchhcccCCcccccCCCccEEeeecC-CCcccchhhhhhhHhhhhcccCCccEEEeccCCCCccc
Q 038658          562 RLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWC-PTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKL  640 (831)
Q Consensus       562 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c-~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l  640 (831)
                      ..+.|+.+.+.+|..+...+  ........+.|++|++++| ......+.....    +.....+|+.|+++.|...+..
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~~~~~L~~l~l~~~~~isd~  259 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDS--LDALALKCPNLEELDLSGCCLLITLSPLLLLL----LLSICRKLKSLDLSGCGLVTDI  259 (482)
T ss_pred             hCchhhHhhhcccccCChhh--HHHHHhhCchhheecccCcccccccchhHhhh----hhhhcCCcCccchhhhhccCch
Confidence            36888888888887766521  1234467788888888873 333222211111    1222257888888888743322


Q ss_pred             -cccc-CCCCCCCeEEEecCCCCccccCC---CCCCCccEEEEecCCCCcccc-cccccCCCCCcCeEEEccCC---Ccc
Q 038658          641 -PQSL-LSLSSLREIEIYNCSSFVSFPEV---ALPSKVRSISIHRCDALKSLP-EAWMCDANLSLEILTISRCH---SLT  711 (831)
Q Consensus       641 -~~~l-~~l~~L~~L~L~~~~~l~~l~~~---~~~~~L~~L~l~~c~~l~~l~-~~~~~~~l~~L~~L~l~~c~---~l~  711 (831)
                       -..+ ..+++|+.|.+.+|..+++-.-.   ..+++|++|++++|..++.-. ... ...+++|+.|.+..+.   .++
T Consensus       260 ~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~-~~~c~~l~~l~~~~~~~c~~l~  338 (482)
T KOG1947|consen  260 GLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL-LKNCPNLRELKLLSLNGCPSLT  338 (482)
T ss_pred             hHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH-HHhCcchhhhhhhhcCCCccHH
Confidence             1112 23778888888888654332111   116778888888888764421 111 1226666665544443   344


Q ss_pred             eeccCC---CC-CCCceEEEecCCCCCccccccCccCCcccccCccccc-eEEEecCCCc-ccccchhhhhhhhhcccc-
Q 038658          712 YIAEVQ---LP-PSLKNVVIRNCDNVRTLTVEEGIQSSSSRRYTSSLLE-HLHIESCPSL-TCIFSKNELLATLESLEV-  784 (831)
Q Consensus       712 ~l~~~~---~~-~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~l~~~~L~-~L~i~~c~~l-~~i~~~~~~~~~l~~l~~-  784 (831)
                      .....+   .. ..+..+.+.+|++++.+.....-       ...  .. .+.+.+|+.+ .. +            .. 
T Consensus       339 ~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-------~~~--~~~~~~l~gc~~l~~~-l------------~~~  396 (482)
T KOG1947|consen  339 DLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-------ISD--LGLELSLRGCPNLTES-L------------ELR  396 (482)
T ss_pred             HHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-------ccC--cchHHHhcCCcccchH-H------------HHH
Confidence            332221   11 15666666667666655211100       011  22 4566667666 22 1            11 


Q ss_pred             CCCCCCcCeeEEccCCchhhh-hhcCCC-CCCCceEEecCCCCCC
Q 038658          785 GNLPPSLKSLEVLSCSKLESI-AERLDN-NTSLETITIISCKNLK  827 (831)
Q Consensus       785 ~~l~~~L~~L~l~~~~~l~~l-~~~~~~-l~~L~~L~i~~C~~l~  827 (831)
                      ......++.|++..|...+.- -..... +..++.+++.+|+.+.
T Consensus       397 ~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~  441 (482)
T KOG1947|consen  397 LCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVIT  441 (482)
T ss_pred             hccCCccceEecccCccccccchHHHhhhhhccccCCccCccccc
Confidence            111133889999998877543 111111 7788888888888765

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.26  E-value=0.00017  Score=81.36  Aligned_cols=110  Identities=20%  Similarity=0.219  Sum_probs=77.0

Q ss_pred             ccCCcceEEccccccCCCccccccccccccc-CCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCcc--chhhh
Q 038658          159 YNIQHLRTFLPVCLSNSSQGFLAHSILPKLF-KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTL--PESVN  235 (831)
Q Consensus       159 ~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~l--p~~i~  235 (831)
                      .-+|.||+|.+.+...     ...+ ...++ ++++|+.||++++.++.+ .++++|++|++|.+++-.+..-  -..+.
T Consensus       145 ~~LPsL~sL~i~~~~~-----~~~d-F~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF  217 (699)
T KOG3665|consen  145 TMLPSLRSLVISGRQF-----DNDD-FSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLF  217 (699)
T ss_pred             hhCcccceEEecCcee-----cchh-HHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHh
Confidence            4578888887765332     1111 23344 888999999999998888 7788999999999988777643  25778


Q ss_pred             ccCCccEEeecCcCcccc--cc----ccccCcccccccccCCCCCc
Q 038658          236 KLYNLHTLSLEGCRGLRK--LC----AGMGNLIKLHHLNNSNTDSL  275 (831)
Q Consensus       236 ~L~~L~~L~l~~~~~~~~--lp----~~i~~L~~L~~L~l~~~~~~  275 (831)
                      +|++|++||+|.......  +.    +.-..|++||.||.+++...
T Consensus       218 ~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  218 NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            899999999987432221  11    11235889999999887633

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.16  E-value=0.00026  Score=79.90  Aligned_cols=137  Identities=23%  Similarity=0.254  Sum_probs=67.8

Q ss_pred             CCCCceeecCCCCCC--ccchhh-hccCCccEEeecCcCcc-ccccccccCcccccccccCCCCCcccccCCCCCccccc
Q 038658          214 LRYLRYLNLSGTQIR--TLPESV-NKLYNLHTLSLEGCRGL-RKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQ  289 (831)
Q Consensus       214 l~~Lr~L~L~~~~i~--~lp~~i-~~L~~L~~L~l~~~~~~-~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~  289 (831)
                      -.+|++||++|...-  .=|..+ ..|+.|+.|.+++-... ...-.-..++++|+.||+++++ ++.+ .++++|++||
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq  198 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQ  198 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHH
Confidence            355666666664321  113333 34567777777652111 1112224566777777777776 4444 5677777777


Q ss_pred             cccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCcc
Q 038658          290 TLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLE  369 (831)
Q Consensus       290 ~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~  369 (831)
                      +|........+...+                    ..+..+++|+.||++........     .......+.-..+++|+
T Consensus       199 ~L~mrnLe~e~~~~l--------------------~~LF~L~~L~vLDIS~~~~~~~~-----~ii~qYlec~~~LpeLr  253 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDL--------------------IDLFNLKKLRVLDISRDKNNDDT-----KIIEQYLECGMVLPELR  253 (699)
T ss_pred             HHhccCCCCCchhhH--------------------HHHhcccCCCeeeccccccccch-----HHHHHHHHhcccCcccc
Confidence            773222211111111                    12334456777777655443321     12222334444456666


Q ss_pred             EEEEeeec
Q 038658          370 QFFISGYG  377 (831)
Q Consensus       370 ~L~l~~~~  377 (831)
                      .|+.+++.
T Consensus       254 fLDcSgTd  261 (699)
T KOG3665|consen  254 FLDCSGTD  261 (699)
T ss_pred             EEecCCcc
Confidence            66666544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.15  E-value=4.5e-05  Score=71.85  Aligned_cols=197  Identities=23%  Similarity=0.243  Sum_probs=110.3

Q ss_pred             ccCCcceEEEEeCCCCcc-----ccCccccCCCCCceeecCCCCCC----ccc-------hhhhccCCccEEeecCcCcc
Q 038658          188 LFKLQRLRVFSLCGYWIS-----ELPDSIGDLRYLRYLNLSGTQIR----TLP-------ESVNKLYNLHTLSLEGCRGL  251 (831)
Q Consensus       188 ~~~l~~L~~L~L~~~~i~-----~lp~~~~~l~~Lr~L~L~~~~i~----~lp-------~~i~~L~~L~~L~l~~~~~~  251 (831)
                      +..+..+..++||+|.|.     .+-..|.+-.+|++.+++.-...    ++|       +.+-++++|+..+|+.|-.-
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence            335777888999999876     24455667788999888864211    333       34567899999999988654


Q ss_pred             cccccc----ccCcccccccccCCCCCcccccCC-CCCccccccccceEecCCCCCcchhhhccccccCeeeEccccccc
Q 038658          252 RKLCAG----MGNLIKLHHLNNSNTDSLEEMPLG-IGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQ  326 (831)
Q Consensus       252 ~~lp~~----i~~L~~L~~L~l~~~~~~~~~p~~-~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~  326 (831)
                      ...|..    |+.-+.|.||.+++|. ++.+..+ |++  .|++|.                ..              ..
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigk--al~~la----------------~n--------------KK  152 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGK--ALFHLA----------------YN--------------KK  152 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHH--HHHHHH----------------HH--------------hh
Confidence            444443    5677889999998887 5543322 321  222220                00              11


Q ss_pred             ccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCC----CccCCCCCCCceeEEEEecCC
Q 038658          327 LDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKF----PIWLGDSSFSNLVTLKFEDCG  402 (831)
Q Consensus       327 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~----p~~~~~~~~~~L~~L~l~~~~  402 (831)
                      ....+.|++.....|....++.       ......+..+.+|+.+.+..|.+..-    -...+...+.+|+.|++.+|.
T Consensus       153 aa~kp~Le~vicgrNRlengs~-------~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt  225 (388)
T COG5238         153 AADKPKLEVVICGRNRLENGSK-------ELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT  225 (388)
T ss_pred             hccCCCceEEEeccchhccCcH-------HHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc
Confidence            2233455555554444433211       01112344456677777766654311    001111125677777777776


Q ss_pred             CCCCCC-----CCCCCCCcceEEeccc
Q 038658          403 MCTTLP-----SVGQLPSLKHLAVRRM  424 (831)
Q Consensus       403 ~~~~~~-----~l~~l~~L~~L~L~~~  424 (831)
                      ++..-.     .+...+.|+.|.+.+|
T Consensus       226 ft~~gS~~La~al~~W~~lrEL~lnDC  252 (388)
T COG5238         226 FTLEGSRYLADALCEWNLLRELRLNDC  252 (388)
T ss_pred             hhhhhHHHHHHHhcccchhhhccccch
Confidence            653211     3445566777777666

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.02  E-value=0.0001  Score=70.53  Aligned_cols=36  Identities=25%  Similarity=0.350  Sum_probs=18.8

Q ss_pred             CCCCCceeecCCCCCC---ccchhhhccCCccEEeecCc
Q 038658          213 DLRYLRYLNLSGTQIR---TLPESVNKLYNLHTLSLEGC  248 (831)
Q Consensus       213 ~l~~Lr~L~L~~~~i~---~lp~~i~~L~~L~~L~l~~~  248 (831)
                      ..++++.|||.+|.|.   ++-..+.+|+.|++|+++.|
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N  107 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN  107 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC
Confidence            3455556666666554   22223345555566665554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.02  E-value=0.00042  Score=66.46  Aligned_cols=84  Identities=25%  Similarity=0.308  Sum_probs=59.0

Q ss_pred             CCcceEEEEeCCCCccc---cCccccCCCCCceeecCCCCCCccchhh-hccCCccEEeecCcCcc-ccccccccCcccc
Q 038658          190 KLQRLRVFSLCGYWISE---LPDSIGDLRYLRYLNLSGTQIRTLPESV-NKLYNLHTLSLEGCRGL-RKLCAGMGNLIKL  264 (831)
Q Consensus       190 ~l~~L~~L~L~~~~i~~---lp~~~~~l~~Lr~L~L~~~~i~~lp~~i-~~L~~L~~L~l~~~~~~-~~lp~~i~~L~~L  264 (831)
                      .++.++.+||.+|.|+.   +-.-+.+|++|++|+|+.|.+...-.+. ..+.+|++|-|.+...- ...-..+..++++
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            67788999999998764   3333478999999999999766332333 46788999999874311 2233446677888


Q ss_pred             cccccCCCC
Q 038658          265 HHLNNSNTD  273 (831)
Q Consensus       265 ~~L~l~~~~  273 (831)
                      +.|+++.|+
T Consensus       149 telHmS~N~  157 (418)
T KOG2982|consen  149 TELHMSDNS  157 (418)
T ss_pred             hhhhhccch
Confidence            888888774

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.99  E-value=9.4e-05  Score=79.42  Aligned_cols=80  Identities=28%  Similarity=0.306  Sum_probs=54.3

Q ss_pred             CCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccch-hhhccCCccEEeecCcCccccccccccCcccccccc
Q 038658          190 KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPE-SVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLN  268 (831)
Q Consensus       190 ~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~  268 (831)
                      -++.|+.|+|++|+++..- .+..+.+|+.|||++|.+..+|. +...++ |+.|.+++|. ++.+ .+|.+|++|+.||
T Consensus       185 ll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~-l~tL-~gie~LksL~~LD  260 (1096)
T KOG1859|consen  185 LLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNA-LTTL-RGIENLKSLYGLD  260 (1096)
T ss_pred             HHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccH-HHhh-hhHHhhhhhhccc
Confidence            4566777778877777663 56777778888888877777764 223333 7777777754 4444 4577777777787


Q ss_pred             cCCCC
Q 038658          269 NSNTD  273 (831)
Q Consensus       269 l~~~~  273 (831)
                      +++|-
T Consensus       261 lsyNl  265 (1096)
T KOG1859|consen  261 LSYNL  265 (1096)
T ss_pred             hhHhh
Confidence            77775

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.84  E-value=8.3e-05  Score=83.19  Aligned_cols=215  Identities=24%  Similarity=0.370  Sum_probs=131.4

Q ss_pred             cccCCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEeccC-CCCcccc----cccCCCCCCCeEEEecCCCCc
Q 038658          588 LQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDC-KGLVKLP----QSLLSLSSLREIEIYNCSSFV  662 (831)
Q Consensus       588 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~l~----~~l~~l~~L~~L~L~~~~~l~  662 (831)
                      ....+.|+.+.+.+|..+....      ...+......|+.|++++| ......+    .....+++|+.|+++.|..++
T Consensus       184 ~~~~~~L~~l~l~~~~~~~~~~------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is  257 (482)
T KOG1947|consen  184 LSSCPLLKRLSLSGCSKITDDS------LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT  257 (482)
T ss_pred             HhhCchhhHhhhcccccCChhh------HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC
Confidence            3458999999999998877533      1112233357999999983 3333222    234457899999999997655


Q ss_pred             cccCCC---CCCCccEEEEecCCCCcccccccccCCCCCcCeEEEccCCCccee--cc-CCCCCCCceEEEecC---CCC
Q 038658          663 SFPEVA---LPSKVRSISIHRCDALKSLPEAWMCDANLSLEILTISRCHSLTYI--AE-VQLPPSLKNVVIRNC---DNV  733 (831)
Q Consensus       663 ~l~~~~---~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l--~~-~~~~~~L~~L~l~~c---~~l  733 (831)
                      +..-..   .+++|++|.+.+|..+++..-......+++|++|++++|..++.-  .. ...+++|+.|.+..+   ..+
T Consensus       258 d~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l  337 (482)
T KOG1947|consen  258 DIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSL  337 (482)
T ss_pred             chhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccH
Confidence            432111   278999999999987665443333345889999999999887431  11 122455555554444   345


Q ss_pred             CccccccCccCCccccc-CccccceEEEecCCCcccccchhhhhhhhhccccCCCCCCcC-eeEEccCCch-hhhhhcCC
Q 038658          734 RTLTVEEGIQSSSSRRY-TSSLLEHLHIESCPSLTCIFSKNELLATLESLEVGNLPPSLK-SLEVLSCSKL-ESIAERLD  810 (831)
Q Consensus       734 ~~l~~~~~~~~~~~~~l-~~~~L~~L~i~~c~~l~~i~~~~~~~~~l~~l~~~~l~~~L~-~L~l~~~~~l-~~l~~~~~  810 (831)
                      +.+........     . -.  +..+.+.+|++++. +.       +..  .+ . .... .+.+.+|+.+ ..+.....
T Consensus       338 ~~~~l~~~~~~-----~~d~--~~~~~~~~~~~l~~-~~-------l~~--~~-~-~~~~~~~~l~gc~~l~~~l~~~~~  398 (482)
T KOG1947|consen  338 TDLSLSGLLTL-----TSDD--LAELILRSCPKLTD-LS-------LSY--CG-I-SDLGLELSLRGCPNLTESLELRLC  398 (482)
T ss_pred             HHHHHHHhhcc-----Cchh--HhHHHHhcCCCcch-hh-------hhh--hh-c-cCcchHHHhcCCcccchHHHHHhc
Confidence            54421111110     1 13  77788888888877 31       000  01 1 2222 6788899988 55544445


Q ss_pred             CCCCCceEEecCCCCCC
Q 038658          811 NNTSLETITIISCKNLK  827 (831)
Q Consensus       811 ~l~~L~~L~i~~C~~l~  827 (831)
                      ....++.|++..|..++
T Consensus       399 ~~~~l~~L~l~~~~~~t  415 (482)
T KOG1947|consen  399 RSDSLRVLNLSDCRLVT  415 (482)
T ss_pred             cCCccceEecccCcccc
Confidence            55569999999998664

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.84  E-value=0.0012  Score=59.99  Aligned_cols=98  Identities=23%  Similarity=0.236  Sum_probs=64.8

Q ss_pred             cceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhh-hccCCccEEeecCcCcccccc--ccccCcccccccc
Q 038658          192 QRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESV-NKLYNLHTLSLEGCRGLRKLC--AGMGNLIKLHHLN  268 (831)
Q Consensus       192 ~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i-~~L~~L~~L~l~~~~~~~~lp--~~i~~L~~L~~L~  268 (831)
                      .....+||++|.+..++ .|..+..|.+|.|.+|+|+.+-+.+ ..+++|.+|.+.+|+ +..+-  ..+..+++|++|.
T Consensus        42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             cccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceee
Confidence            35567788888877663 4667788888888888888775555 445668888888765 43332  2256777888888


Q ss_pred             cCCCCCcccccC----CCCCcccccccc
Q 038658          269 NSNTDSLEEMPL----GIGKLTCLQTLC  292 (831)
Q Consensus       269 l~~~~~~~~~p~----~~~~L~~L~~L~  292 (831)
                      +-+|. ...-+.    -+.++++|++|+
T Consensus       120 ll~Np-v~~k~~YR~yvl~klp~l~~LD  146 (233)
T KOG1644|consen  120 LLGNP-VEHKKNYRLYVLYKLPSLRTLD  146 (233)
T ss_pred             ecCCc-hhcccCceeEEEEecCcceEee
Confidence            87776 332221    256677777773

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.58  E-value=0.00082  Score=37.60  Aligned_cols=19  Identities=42%  Similarity=0.882  Sum_probs=9.2

Q ss_pred             CceeecCCCCCCccchhhh
Q 038658          217 LRYLNLSGTQIRTLPESVN  235 (831)
Q Consensus       217 Lr~L~L~~~~i~~lp~~i~  235 (831)
                      ||+||+++|+++.+|++++
T Consensus         2 L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEESEEGTTTT
T ss_pred             ccEEECCCCcCEeCChhhc
Confidence            4455555555444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.48  E-value=0.0017  Score=61.70  Aligned_cols=105  Identities=23%  Similarity=0.258  Sum_probs=57.9

Q ss_pred             CCcceEEEEeCCCCccccCccccCCCCCceeecCCC--CCC-ccchhhhccCCccEEeecCcCccccc--cccccCcccc
Q 038658          190 KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGT--QIR-TLPESVNKLYNLHTLSLEGCRGLRKL--CAGMGNLIKL  264 (831)
Q Consensus       190 ~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~--~i~-~lp~~i~~L~~L~~L~l~~~~~~~~l--p~~i~~L~~L  264 (831)
                      .+..|+.|++.+..++++ ..+..|++|++|.++.|  ++. .++....++++|++|++++|. ++.+  -..+..+.+|
T Consensus        41 ~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKELENL  118 (260)
T ss_pred             cccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhhhhcch
Confidence            444555555555555544 34556677777777777  443 454444555777777777764 2221  0124556666


Q ss_pred             cccccCCCCCccccc----CCCCCccccccccceEec
Q 038658          265 HHLNNSNTDSLEEMP----LGIGKLTCLQTLCNFVVG  297 (831)
Q Consensus       265 ~~L~l~~~~~~~~~p----~~~~~L~~L~~L~~~~~~  297 (831)
                      ..|++..|.... +-    ..+.-+++|..|+.+.+.
T Consensus       119 ~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~  154 (260)
T KOG2739|consen  119 KSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVD  154 (260)
T ss_pred             hhhhcccCCccc-cccHHHHHHHHhhhhccccccccC
Confidence            677777665322 21    114456666666555443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.42  E-value=0.00022  Score=67.66  Aligned_cols=58  Identities=33%  Similarity=0.320  Sum_probs=32.0

Q ss_pred             CCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccc--hhhhccCCccEEeecCc
Q 038658          190 KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLP--ESVNKLYNLHTLSLEGC  248 (831)
Q Consensus       190 ~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp--~~i~~L~~L~~L~l~~~  248 (831)
                      +|+.|+||.|+-|.|+++ ..+..+++|+.|.|+.|.|..+-  ..+.+|++|++|.|..|
T Consensus        39 kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN   98 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN   98 (388)
T ss_pred             hcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence            566666666666666655 33555666666666666655442  23344455555554444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.12  E-value=0.0058  Score=55.65  Aligned_cols=87  Identities=23%  Similarity=0.202  Sum_probs=65.6

Q ss_pred             cccccCCcceEEEEeCCCCccccCccc-cCCCCCceeecCCCCCCccc--hhhhccCCccEEeecCcCcccccc----cc
Q 038658          185 LPKLFKLQRLRVFSLCGYWISELPDSI-GDLRYLRYLNLSGTQIRTLP--ESVNKLYNLHTLSLEGCRGLRKLC----AG  257 (831)
Q Consensus       185 ~~~~~~l~~L~~L~L~~~~i~~lp~~~-~~l~~Lr~L~L~~~~i~~lp--~~i~~L~~L~~L~l~~~~~~~~lp----~~  257 (831)
                      ...+..++.|.+|.|.+|+|+.+-..+ ..+++|..|.|.+|+|.++-  ..+..++.|++|.+-+|... .-+    -.
T Consensus        57 l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~-~k~~YR~yv  135 (233)
T KOG1644|consen   57 LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVE-HKKNYRLYV  135 (233)
T ss_pred             cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchh-cccCceeEE
Confidence            344558889999999999999885555 45677999999999888663  35677889999999887532 221    23


Q ss_pred             ccCcccccccccCCC
Q 038658          258 MGNLIKLHHLNNSNT  272 (831)
Q Consensus       258 i~~L~~L~~L~l~~~  272 (831)
                      +.++++|+.||..+-
T Consensus       136 l~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  136 LYKLPSLRTLDFQKV  150 (233)
T ss_pred             EEecCcceEeehhhh
Confidence            778999999998764

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.11  E-value=0.00052  Score=65.20  Aligned_cols=105  Identities=21%  Similarity=0.229  Sum_probs=80.8

Q ss_pred             CCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCcccccc--ccccCccccccc
Q 038658          190 KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLC--AGMGNLIKLHHL  267 (831)
Q Consensus       190 ~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp--~~i~~L~~L~~L  267 (831)
                      .+.+.+.|++.+|.+..+ .-..+|+.|++|.||-|.|+++ ..+..+++|+.|+|+.|. +..+-  .-+.+|++|+.|
T Consensus        17 dl~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhH
Confidence            355677888999998877 2346899999999999999998 568899999999999875 44443  236789999999


Q ss_pred             ccCCCCCcccccCC-----CCCccccccccceEec
Q 038658          268 NNSNTDSLEEMPLG-----IGKLTCLQTLCNFVVG  297 (831)
Q Consensus       268 ~l~~~~~~~~~p~~-----~~~L~~L~~L~~~~~~  297 (831)
                      .|..|.-.+.-+..     +.-|++|+.|++..+.
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~Vt  128 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVT  128 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhccCcccc
Confidence            99988655544433     5668888888765554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.89  E-value=0.0042  Score=34.71  Aligned_cols=22  Identities=27%  Similarity=0.561  Sum_probs=18.7

Q ss_pred             ceEEEEeCCCCccccCccccCC
Q 038658          193 RLRVFSLCGYWISELPDSIGDL  214 (831)
Q Consensus       193 ~L~~L~L~~~~i~~lp~~~~~l  214 (831)
                      +|++||+++|.++.+|.+|++|
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT-
T ss_pred             CccEEECCCCcCEeCChhhcCC
Confidence            5899999999999999887654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.12  E-value=0.012  Score=30.33  Aligned_cols=16  Identities=44%  Similarity=0.748  Sum_probs=6.0

Q ss_pred             CCceeecCCCCCCccc
Q 038658          216 YLRYLNLSGTQIRTLP  231 (831)
Q Consensus       216 ~Lr~L~L~~~~i~~lp  231 (831)
                      +||+|++++|+++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4455555555544443

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.88  E-value=0.0014  Score=60.67  Aligned_cols=86  Identities=16%  Similarity=0.167  Sum_probs=73.4

Q ss_pred             cccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcccccc
Q 038658          187 KLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHH  266 (831)
Q Consensus       187 ~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~  266 (831)
                      ++..++..++||++.|++..+-..|+.++.|..||++.|.|..+|..++.+..++.+++..|. ....|.+++.++++++
T Consensus        37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~k~  115 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHPKK  115 (326)
T ss_pred             hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCcch
Confidence            344677889999999998888778888899999999999999999999999999999888754 7778888999999999


Q ss_pred             cccCCCC
Q 038658          267 LNNSNTD  273 (831)
Q Consensus       267 L~l~~~~  273 (831)
                      ++..++.
T Consensus       116 ~e~k~~~  122 (326)
T KOG0473|consen  116 NEQKKTE  122 (326)
T ss_pred             hhhccCc
Confidence            9888876

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.61  E-value=0.0085  Score=57.14  Aligned_cols=61  Identities=25%  Similarity=0.195  Sum_probs=44.5

Q ss_pred             cCCCCCceeecCCCCCCccchhhhccCCccEEeecCc--CccccccccccCcccccccccCCCC
Q 038658          212 GDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGC--RGLRKLCAGMGNLIKLHHLNNSNTD  273 (831)
Q Consensus       212 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~--~~~~~lp~~i~~L~~L~~L~l~~~~  273 (831)
                      -.+..|..|++.+..++++ ..+-.|++|+.|+++.|  .....++.-..++++|++|++++|+
T Consensus        40 d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk  102 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK  102 (260)
T ss_pred             ccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc
Confidence            3456666677776666544 34457889999999998  4444555555677999999999998

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.38  E-value=0.11  Score=45.52  Aligned_cols=78  Identities=10%  Similarity=0.298  Sum_probs=35.6

Q ss_pred             CCcceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCCccch-hhhccCCccEEeecCcCccccccc-cccCcccccc
Q 038658          190 KLQRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTLPE-SVNKLYNLHTLSLEGCRGLRKLCA-GMGNLIKLHH  266 (831)
Q Consensus       190 ~l~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~  266 (831)
                      ++.+|+.+.+.. .+..+ ..+|..+.+|+.+.+.++ +..++. .+.++.+|+.+.+..  ....++. .+..+++|+.
T Consensus        10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~   85 (129)
T PF13306_consen   10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKN   85 (129)
T ss_dssp             T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECE
T ss_pred             CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--cccccccccccccccccc
Confidence            555666666653 34455 344566666666666654 555543 455565666666654  2333332 3455666666


Q ss_pred             cccCC
Q 038658          267 LNNSN  271 (831)
Q Consensus       267 L~l~~  271 (831)
                      +++..
T Consensus        86 i~~~~   90 (129)
T PF13306_consen   86 IDIPS   90 (129)
T ss_dssp             EEETT
T ss_pred             cccCc
Confidence            66644

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=94.32  E-value=0.012  Score=56.09  Aligned_cols=175  Identities=17%  Similarity=0.136  Sum_probs=103.6

Q ss_pred             ccccCCCCCceeecCCCCCC-----ccchhhhccCCccEEeecCcC---ccccccc-------cccCcccccccccCCCC
Q 038658          209 DSIGDLRYLRYLNLSGTQIR-----TLPESVNKLYNLHTLSLEGCR---GLRKLCA-------GMGNLIKLHHLNNSNTD  273 (831)
Q Consensus       209 ~~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~---~~~~lp~-------~i~~L~~L~~L~l~~~~  273 (831)
                      +.+..+..+..++||+|.|.     .+-..|.+-.+|++.+++.-.   ....+|+       .+-++++|+..+++.|.
T Consensus        24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA  103 (388)
T COG5238          24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA  103 (388)
T ss_pred             HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence            34455788999999999886     244556777889998887521   1112333       35577889999999887


Q ss_pred             CcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCChhh--
Q 038658          274 SLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLRE--  351 (831)
Q Consensus       274 ~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~--  351 (831)
                      +-...|..++.                                         .++....|.+|.+++|+.......+.  
T Consensus       104 fg~~~~e~L~d-----------------------------------------~is~~t~l~HL~l~NnGlGp~aG~rigk  142 (388)
T COG5238         104 FGSEFPEELGD-----------------------------------------LISSSTDLVHLKLNNNGLGPIAGGRIGK  142 (388)
T ss_pred             cCcccchHHHH-----------------------------------------HHhcCCCceeEEeecCCCCccchhHHHH
Confidence            55555543211                                         12333456666665554322110000  


Q ss_pred             hhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCC---CCCCceeEEEEecCCCCCC-CC-----CCCCCCCcceEEec
Q 038658          352 AETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGD---SSFSNLVTLKFEDCGMCTT-LP-----SVGQLPSLKHLAVR  422 (831)
Q Consensus       352 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~---~~~~~L~~L~l~~~~~~~~-~~-----~l~~l~~L~~L~L~  422 (831)
                      ..............+.|+......|+....|.....   .+-.+|+.+.+..|.+... +.     .+..+.+|+.|+|+
T Consensus       143 al~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlq  222 (388)
T COG5238         143 ALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQ  222 (388)
T ss_pred             HHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeecc
Confidence            001112223345568899999998887776643221   1125788888888876422 11     34567788888887


Q ss_pred             cc
Q 038658          423 RM  424 (831)
Q Consensus       423 ~~  424 (831)
                      ++
T Consensus       223 DN  224 (388)
T COG5238         223 DN  224 (388)
T ss_pred             cc
Confidence            64

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.93  E-value=0.037  Score=28.53  Aligned_cols=17  Identities=29%  Similarity=0.591  Sum_probs=8.4

Q ss_pred             CCCceEEecCCCCCCCCC
Q 038658          813 TSLETITIISCKNLKNLP  830 (831)
Q Consensus       813 ~~L~~L~i~~C~~l~~lp  830 (831)
                      ++|+.|++++|. ++.+|
T Consensus         1 ~~L~~L~l~~n~-L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNR-LTSLP   17 (17)
T ss_dssp             TT-SEEEETSS---SSE-
T ss_pred             CccCEEECCCCC-CCCCc
Confidence            456666666666 66665

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.59  E-value=0.0066  Score=55.35  Aligned_cols=85  Identities=15%  Similarity=0.242  Sum_probs=44.0

Q ss_pred             ccEEEEecCCCCcccccccccCCCCCcCeEEEccCCCcceeccC---CCCCCCceEEEecCCCCCccccccCccCCcccc
Q 038658          673 VRSISIHRCDALKSLPEAWMCDANLSLEILTISRCHSLTYIAEV---QLPPSLKNVVIRNCDNVRTLTVEEGIQSSSSRR  749 (831)
Q Consensus       673 L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~---~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~  749 (831)
                      ++.++.+++.....-.+.+..  +++++.|.+.+|..+.+-.-.   +..++|+.|+|++|+++++-. -..+..     
T Consensus       103 IeaVDAsds~I~~eGle~L~~--l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G-L~~L~~-----  174 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRD--LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG-LACLLK-----  174 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhc--cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH-HHHHHH-----
Confidence            344444444333322333333  666666677666655432111   345677777777777777553 222333     


Q ss_pred             cCccccceEEEecCCCcc
Q 038658          750 YTSSLLEHLHIESCPSLT  767 (831)
Q Consensus       750 l~~~~L~~L~i~~c~~l~  767 (831)
                      +++  |+.|.+.+-+.+.
T Consensus       175 lkn--Lr~L~l~~l~~v~  190 (221)
T KOG3864|consen  175 LKN--LRRLHLYDLPYVA  190 (221)
T ss_pred             hhh--hHHHHhcCchhhh
Confidence            444  6666666654443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.54  E-value=0.017  Score=52.79  Aligned_cols=38  Identities=18%  Similarity=0.343  Sum_probs=18.9

Q ss_pred             CCcCeeEEccCCchhhh-hhcCCCCCCCceEEecCCCCC
Q 038658          789 PSLKSLEVLSCSKLESI-AERLDNNTSLETITIISCKNL  826 (831)
Q Consensus       789 ~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~i~~C~~l  826 (831)
                      ++|+.|+|++|+.+++- -.++..+++|+.|.+.+-|.+
T Consensus       151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v  189 (221)
T KOG3864|consen  151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV  189 (221)
T ss_pred             cchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence            55555555555555443 333444555555555554443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=92.38  E-value=0.49  Score=41.36  Aligned_cols=9  Identities=33%  Similarity=0.383  Sum_probs=2.9

Q ss_pred             CCCCCeEEE
Q 038658          647 LSSLREIEI  655 (831)
Q Consensus       647 l~~L~~L~L  655 (831)
                      +++|+.+.+
T Consensus        57 ~~~l~~i~~   65 (129)
T PF13306_consen   57 CKSLESITF   65 (129)
T ss_dssp             -TT-EEEEE
T ss_pred             ccccccccc
Confidence            333444444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.07  E-value=0.13  Score=30.14  Aligned_cols=21  Identities=43%  Similarity=0.626  Sum_probs=14.4

Q ss_pred             CCCCceeecCCCCCCccchhh
Q 038658          214 LRYLRYLNLSGTQIRTLPESV  234 (831)
Q Consensus       214 l~~Lr~L~L~~~~i~~lp~~i  234 (831)
                      +++|++|+|++|+|+.+|...
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            456777777777777776543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.07  E-value=0.13  Score=30.14  Aligned_cols=21  Identities=43%  Similarity=0.626  Sum_probs=14.4

Q ss_pred             CCCCceeecCCCCCCccchhh
Q 038658          214 LRYLRYLNLSGTQIRTLPESV  234 (831)
Q Consensus       214 l~~Lr~L~L~~~~i~~lp~~i  234 (831)
                      +++|++|+|++|+|+.+|...
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            456777777777777776543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.50  E-value=0.011  Score=54.95  Aligned_cols=86  Identities=17%  Similarity=0.206  Sum_probs=74.7

Q ss_pred             ccccC-ccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcccccccccCCCCCcccccCCC
Q 038658          204 ISELP-DSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGI  282 (831)
Q Consensus       204 i~~lp-~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~  282 (831)
                      ++.+| ..+.....-++||++.|++..+-..++.++.|..||++.| .+..+|.+++.+..++++++..|+ ....|.++
T Consensus        30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~  107 (326)
T KOG0473|consen   30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQ  107 (326)
T ss_pred             hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccc-hhhCCccc
Confidence            33454 4567788899999999998888888999999999999985 488899999999999999999887 88899999


Q ss_pred             CCccccccc
Q 038658          283 GKLTCLQTL  291 (831)
Q Consensus       283 ~~L~~L~~L  291 (831)
                      ++++.++.+
T Consensus       108 ~k~~~~k~~  116 (326)
T KOG0473|consen  108 KKEPHPKKN  116 (326)
T ss_pred             cccCCcchh
Confidence            999998887

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=85.89  E-value=0.5  Score=27.58  Aligned_cols=16  Identities=19%  Similarity=0.542  Sum_probs=12.8

Q ss_pred             CCCCceEEecCCCCCC
Q 038658          812 NTSLETITIISCKNLK  827 (831)
Q Consensus       812 l~~L~~L~i~~C~~l~  827 (831)
                      +++|++|++++|++++
T Consensus         1 c~~L~~L~l~~C~~it   16 (26)
T smart00367        1 CPNLRELDLSGCTNIT   16 (26)
T ss_pred             CCCCCEeCCCCCCCcC
Confidence            5788888888888775

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=84.79  E-value=0.54  Score=27.42  Aligned_cols=21  Identities=33%  Similarity=0.469  Sum_probs=17.7

Q ss_pred             CcceEEEEeCCCCccccCccc
Q 038658          191 LQRLRVFSLCGYWISELPDSI  211 (831)
Q Consensus       191 l~~L~~L~L~~~~i~~lp~~~  211 (831)
                      +++|++|+|++|.++.+|...
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            467999999999999997653

>smart00370 LRR Leucine-rich repeats, outliers

Probab=84.79  E-value=0.54  Score=27.42  Aligned_cols=21  Identities=33%  Similarity=0.469  Sum_probs=17.7

Q ss_pred             CcceEEEEeCCCCccccCccc
Q 038658          191 LQRLRVFSLCGYWISELPDSI  211 (831)
Q Consensus       191 l~~L~~L~L~~~~i~~lp~~~  211 (831)
                      +++|++|+|++|.++.+|...
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            467999999999999997653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	831
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	7e-33
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	9e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	8e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	1e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	8e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-04

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score =  133 bits (337), Expect = 7e-33
 Identities = 35/242 (14%), Positives = 79/242 (32%), Gaps = 40/242 (16%)

Query: 1   DWEGVLSCNIWDLPEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLW 60
            ++ +   + +D       +  A+ +S   L   +K  +   S+  KD +   + + +LW
Sbjct: 349 QFKRIRKSSSYDYE----ALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILW 404

Query: 61  SAVGFLDHRKSENPCEDLGRKFFQELRARSFFQQSSNNKSL-FVMHDLINDLAHWAAGEI 119
                      E    +      QE   +S      N KS  + +HDL  D       + 
Sbjct: 405 DM---------E---TEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDF---LTEKN 449

Query: 120 YFTMDYTSEVNKQQSFSKNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGF 179
              +    +   ++  ++  R+        D     + +Y       FL   ++++    
Sbjct: 450 CSQL----QDLHKKIITQFQRYHQPHTLSPDQ---EDCMY----WYNFLAYHMASAKMHK 498

Query: 180 LAHSILPKL----FKLQRLRVFSLCG-----YWISELPDSIGDLRYLRYLNLSGTQIRTL 230
              +++  L     K + +    L         I +  D      +  +L+L+G  +   
Sbjct: 499 ELCALMFSLDWIKAKTELVGPAHLIHEFVEYRHILDEKDCAVSENFQEFLSLNGHLLGRQ 558

Query: 231 PE 232
           P 
Sbjct: 559 PF 560

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score =  102 bits (255), Expect = 9e-23
 Identities = 20/176 (11%), Positives = 44/176 (25%), Gaps = 17/176 (9%)

Query: 11  WDLPEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWSAVGFLDHRK 70
              P     +  AL+     LS   +   A+  + P   +   +    +       +  +
Sbjct: 365 CITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIPVKLWSCVIPVDICSNEEE 424

Query: 71  SENPCEDLGRKFFQELRARSFFQQSSNNKSL-FVMHDLINDLAHWAAGEIYFTMDYTSEV 129
                +D      + L  R           L F +  +I+             +D  +  
Sbjct: 425 QL---DDEVADRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLK-------HVVDAQTIA 474

Query: 130 NKQQSFSKNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAHSIL 185
           N      + L       G  +       +    H + F     S         +++
Sbjct: 475 NGISILEQRLLE----IGNNNVSVPERHI--PSHFQKFRRSSASEMYPKTTEETVI 524

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 90.4 bits (225), Expect = 9e-20
 Identities = 31/109 (28%), Positives = 47/109 (43%)

Query: 183 SILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHT 242
               +   L  L+   L    I  LP SI +L+ L+ L +  + +  L  +++ L  L  
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEE 233

Query: 243 LSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTL 291
           L L GC  LR      G    L  L   +  +L  +PL I +LT L+ L
Sbjct: 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 85.4 bits (212), Expect = 4e-18
 Identities = 53/247 (21%), Positives = 89/247 (36%), Gaps = 38/247 (15%)

Query: 190 KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCR 249
                    L    + + PD    L +L+++ +    +  LP+++ +   L TL+L    
Sbjct: 79  TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP 138

Query: 250 GLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKL 309
            LR L A + +L +L  L+      L E+P  +                     L+ L+L
Sbjct: 139 -LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL-------VNLQSLRL 190

Query: 310 ----LTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPH 365
               +  L    +I+ L        +NLK L +R       S L         L      
Sbjct: 191 EWTGIRSL--PASIANL--------QNLKSLKIR------NSPLSALGPAIHHL------ 228

Query: 366 KNLEQFFISGYGG-TKFPIWLGDSSFSNLVTLKFEDCGMCTTLP-SVGQLPSLKHLAVRR 423
             LE+  + G      +P   G    + L  L  +DC    TLP  + +L  L+ L +R 
Sbjct: 229 PKLEELDLRGCTALRNYPPIFGG--RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286

Query: 424 MSRVRRL 430
              + RL
Sbjct: 287 CVNLSRL 293

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 84.6 bits (210), Expect = 8e-18
 Identities = 54/254 (21%), Positives = 85/254 (33%), Gaps = 56/254 (22%)

Query: 185 LPK-LFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTL 243
            P   F+L  L+  ++    + ELPD++     L  L L+   +R LP S+  L  L  L
Sbjct: 96  FPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLREL 155

Query: 244 SLEGCRGLRKLCAGMGN---------LIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNF 294
           S+  C  L +L   + +         L+ L  L    T  +  +P  I  L  L++L   
Sbjct: 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSL--- 211

Query: 295 VVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAET 354
              K   S L  L           I  L          L+ L LR   +           
Sbjct: 212 ---KIRNSPLSAL--------GPAIHHL--------PKLEELDLRGCTA----------- 241

Query: 355 QKGVLDMLKPH----KNLEQFFISGYGG-TKFPIWLGDSSFSNLVTLKFEDCGMCTTLP- 408
               L    P       L++  +         P+ +     + L  L    C   + LP 
Sbjct: 242 ----LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH--RLTQLEKLDLRGCVNLSRLPS 295

Query: 409 SVGQLPSLKHLAVR 422
            + QLP+   + V 
Sbjct: 296 LIAQLPANCIILVP 309

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 68.0 bits (167), Expect = 2e-12
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 2/92 (2%)

Query: 182 HSILPKLFKLQRLRVFSLCGYW-ISELPDSIGDLRYLRYLNLSG-TQIRTLPESVNKLYN 239
            ++ P +  L +L    L G   +   P   G    L+ L L   + + TLP  +++L  
Sbjct: 219 SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQ 278

Query: 240 LHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSN 271
           L  L L GC  L +L + +  L     +    
Sbjct: 279 LEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 63.0 bits (154), Expect = 1e-10
 Identities = 56/346 (16%), Positives = 108/346 (31%), Gaps = 75/346 (21%)

Query: 204 ISELPDSIGDLRYLRYLN--------------------LSGTQIRTLPESVNKLY--NLH 241
           +    D +   +     +                     +G  ++   + +         
Sbjct: 25  LRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRV 84

Query: 242 TLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSG 301
            L L     L +       L  L H+       L E+P  + +   L+TL        + 
Sbjct: 85  ALELRSVP-LPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETL-TL-----AR 136

Query: 302 SRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDM 361
           + LR L          +I+ L          L+ L +R       + L E          
Sbjct: 137 NPLRAL--------PASIASL--------NRLRELSIRACPEL--TELPEPLASTDASGE 178

Query: 362 LKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHLAV 421
            +   NL+   +   G    P  +   +  NL +LK  +  +    P++  LP L+ L +
Sbjct: 179 HQGLVNLQSLRLEWTGIRSLPASIA--NLQNLKSLKIRNSPLSALGPAIHHLPKLEELDL 236

Query: 422 RRMSRVRRLGSEFYGNDTPIPFPCLETL--RFENLLEWEDWIPHGSTQGVEGFPKLRELE 479
           R  + +R     F G         L+ L  +  + L     +P      +    +L +L+
Sbjct: 237 RGCTALRNYPPIF-GG-----RAPLKRLILKDCSNLL---TLP----LDIHRLTQLEKLD 283

Query: 480 VIGCSKLKGTFPE---HLPALEMLVIGGC------EELLVSITSLP 516
           + GC  L    P     LPA  ++++         +   V+  + P
Sbjct: 284 LRGCVNLS-RLPSLIAQLPANCIILVPPHLQAQLDQHRPVARPAEP 328

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 61.1 bits (149), Expect = 4e-10
 Identities = 65/344 (18%), Positives = 99/344 (28%), Gaps = 59/344 (17%)

Query: 490 FPEHLPALEMLVIGGCEELLVSITSLPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDT 549
              H    E L   G   L      L    +       +        +  +         
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGR 66

Query: 550 LNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLV 609
             +           P    LE+ ++        +       +S L+ +TI     L  L 
Sbjct: 67  ALKATADLLEDATQPGRVALELRSVPLPQ-FPDQ----AFRLSHLQHMTIDAAG-LMELP 120

Query: 610 AEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSLLSLSSLREIEIYNCSSFVSFPEVAL 669
                    + + +  LE L L     L  LP S+ SL+ LRE+ I  C      PE   
Sbjct: 121 DT-------MQQFA-GLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPE--- 168

Query: 670 PSKVRSISIHRCDALKSLPEAWMCDANLSLEILTISRCHSLTYIAEVQLPPSLKNVVIRN 729
                   +   DA             ++L+ L +     +       LP S     I N
Sbjct: 169 -------PLASTDASGEHQGL------VNLQSLRLEWT-GIR-----SLPAS-----IAN 204

Query: 730 CDNVRTLTVEEGIQSSSSRRYTSSLLEHL--HIESCPSLTC-IFSKNELLATLESLEVGN 786
             N+++L +              S L  L   I   P L          L        G 
Sbjct: 205 LQNLKSLKIRN------------SPLSALGPAIHHLPKLEELDLRGCTALRNYPP-IFGG 251

Query: 787 LPPSLKSLEVLSCSKLESIAERLDNNTSLETITIISCKNLKNLP 830
               LK L +  CS L ++   +   T LE + +  C NL  LP
Sbjct: 252 RA-PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 58.0 bits (141), Expect = 4e-09
 Identities = 68/436 (15%), Positives = 115/436 (26%), Gaps = 129/436 (29%)

Query: 229 TLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCL 288
           +     +       L  +G   LR     +    + ++ + +   S              
Sbjct: 3   SSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNP 58

Query: 289 QTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSS 348
           Q          +G  L+                LE+A          L LR         
Sbjct: 59  QIETR------TGRALKAT-----------ADLLEDATQ---PGRVALELR------SVP 92

Query: 349 LREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLP 408
           L +        D      +L+   I   G  + P  +    F+ L TL      +   LP
Sbjct: 93  LPQ------FPDQAFRLSHLQHMTIDAAGLMELPDTMQ--QFAGLETLTLARNPL-RALP 143

Query: 409 -SVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQ 467
            S+  L  L+ L++R    +  L       D       L  L+   L             
Sbjct: 144 ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL------------- 190

Query: 468 GVEGFPKLRELEVIGCSKLKGTFPE---HLPALEMLVIGGCEELLVSITSLPALSKLEIG 524
                           + ++ + P    +L  L+ L I         +++L       I 
Sbjct: 191 --------------EWTGIR-SLPASIANLQNLKSLKIRNS-----PLSALGP----AIH 226

Query: 525 GCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRH 584
                                                 LPKLEEL++             
Sbjct: 227 -------------------------------------HLPKLEELDLRGCTALRNYPPI- 248

Query: 585 NGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSL 644
                  + LKRL +  C  L +L  +       +  L+ +LE L L  C  L +LP  +
Sbjct: 249 ---FGGRAPLKRLILKDCSNLLTLPLD-------IHRLT-QLEKLDLRGCVNLSRLPSLI 297

Query: 645 LSLSSLREIEIYNCSS 660
             L +   I +     
Sbjct: 298 AQLPANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 49.2 bits (118), Expect = 3e-06
 Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 3/67 (4%)

Query: 185 LPK-LFKLQRLRVFSLCGY-WISELPDSIGDLRYLRYLNLSG-TQIRTLPESVNKLYNLH 241
            P        L+   L     +  LP  I  L  L  L+L G   +  LP  + +L    
Sbjct: 245 YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304

Query: 242 TLSLEGC 248
            + +   
Sbjct: 305 IILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 45.3 bits (108), Expect = 5e-05
 Identities = 48/314 (15%), Positives = 90/314 (28%), Gaps = 68/314 (21%)

Query: 391 SNLVTLKFEDCGMCTTLP-SVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETL 449
           S    L F+           + Q     +    R     R  +           P +ET 
Sbjct: 12  SGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN--------SNNPQIETR 63

Query: 450 RFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPE---HLPALEMLVIGGC- 505
               L    D +   +       P    LE +    L   FP+    L  L+ + I    
Sbjct: 64  TGRALKATADLLEDATQ------PGRVALE-LRSVPLP-QFPDQAFRLSHLQHMTIDAAG 115

Query: 506 -EELLVSITSLPALSKLEIGGCK--------------KVVWRSETDHLGSQNSVVCRDTL 550
             EL  ++     L  L +                  + +       L      +     
Sbjct: 116 LMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDA 175

Query: 551 NQVLLAGPLKPRLPKLEEL------------EISNIKNETYIWKRHNGF------LQDIS 592
           +           L  L+ L             I+N++N   +  R++        +  + 
Sbjct: 176 SGEH------QGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLP 229

Query: 593 SLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSLLSLSSLRE 652
            L+ L +  C  L++               +  L+ L+L DC  L+ LP  +  L+ L +
Sbjct: 230 KLEELDLRGCTALRNYPPI-------FGGRAP-LKRLILKDCSNLLTLPLDIHRLTQLEK 281

Query: 653 IEIYNCSSFVSFPE 666
           +++  C +    P 
Sbjct: 282 LDLRGCVNLSRLPS 295

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 80.3 bits (197), Expect = 1e-15
 Identities = 35/265 (13%), Positives = 70/265 (26%), Gaps = 89/265 (33%)

Query: 5   VLSCNIWDLPEERCDIIP------------------------------ALRVSYYYLSAP 34
            L C   DLP E     P                               +  S   L   
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369

Query: 35  -LKQCFAYCSLFPKDYEFEEEEIILLWSAVGFLDHRKSENPCEDLGRKFFQELRARSFFQ 93
             ++ F   S+FP         + L+W  V         +           +L   S  +
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDV------IKSDV-----MVVVNKLHKYSLVE 418

Query: 94  QSSNNKSLFVMHDLINDLAHWAAGEIYFTMDYTSEVNKQQSFSKNLRHLSCICGKYDGVK 153
           +    +S   +  +               ++   ++  + +      H S +   Y+  K
Sbjct: 419 K-QPKESTISIPSIY--------------LELKVKLENEYAL-----HRSIV-DHYNIPK 457

Query: 154 RFEDLYNIQHLRTFLPVCLSNSSQGFLAH-----------SILPKLFKL------QRLRV 196
            F+           +P  L       + H           ++   +F L      Q++R 
Sbjct: 458 TFD-------SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF-LDFRFLEQKIRH 509

Query: 197 FSLCGYWISELPDSIGDLR-YLRYL 220
            S        + +++  L+ Y  Y+
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYI 534

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.5 bits (143), Expect = 4e-09
 Identities = 96/662 (14%), Positives = 182/662 (27%), Gaps = 187/662 (28%)

Query: 93  QQSSNNKSLFV-MHDLINDLAHWAAGEIYFTMDYTSEVNKQQSF----------SKNLRH 141
            Q      L V     +++       +     D    +  ++            S  LR 
Sbjct: 14  HQYQYKDILSVFEDAFVDNF------DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67

Query: 142 LSCICGK-YDGVKRF-EDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSL 199
              +  K  + V++F E++  I +   FL   +    +     S++ +++  QR R++  
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRINY--KFLMSPIKTEQRQ---PSMMTRMYIEQRDRLY-- 120

Query: 200 CGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYN------------LH------ 241
                        D +     N+S    R   +   KL              +       
Sbjct: 121 ------------NDNQVFAKYNVS----R--LQPYLKLRQALLELRPAKNVLIDGVLGSG 162

Query: 242 --TLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKD 299
              ++L+ C   +  C  M   I    LN  N +S E +   + KL   Q   N+    D
Sbjct: 163 KTWVALDVCLSYKVQCK-MDFKI--FWLNLKNCNSPETVLEMLQKL-LYQIDPNWTSRSD 218

Query: 300 SGSRLR----ELKLLTHLRGTLTISKLENA--QLDGKKNL----------KVLML-RWTN 342
             S ++     ++    LR  L     EN    L   +N           K+L+  R+  
Sbjct: 219 HSSNIKLRIHSIQ--AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ 276

Query: 343 STDGSSLREAETQKGVLDMLKP---HKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFE 399
            TD   L  A T    LD          ++   +          +L          L  E
Sbjct: 277 VTD--FLSAATTTHISLDHHSMTLTPDEVKSLLLK---------YLDCRPQD----LPRE 321

Query: 400 DCGMCTTLP-SVGQLPSL-----------KHLAVRRMSRVRRLG---------SEFYGN- 437
              + TT P  +  +              KH+   +++ +              + +   
Sbjct: 322 ---VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378

Query: 438 -----DTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPE 492
                   IP   L  +       W D I       V    K   +E       + T   
Sbjct: 379 SVFPPSAHIPTILLSLI-------WFDVIKSDVMVVVNKLHKYSLVE---KQPKESTI-- 426

Query: 493 HLPALEMLVIGGCEELLVS----ITSLPALSKLEIGGCKKVVWRSETD---------HLG 539
            +P++ + +    E         +         +             D         HL 
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL----DQYFYSHIGHHLK 482

Query: 540 SQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRHNGF---LQDISSLKR 596
           +            V L             LE   I++++  W         LQ +   K 
Sbjct: 483 NIEHPERMTLFRMVFL---------DFRFLE-QKIRHDSTAWNASGSILNTLQQLKFYKP 532

Query: 597 LTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKL----PQSLLSLSSLRE 652
                 P  + LV        +  E     E L+ +    L+++        +   + ++
Sbjct: 533 YICDNDPKYERLVNAILDFLPK-IE-----ENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586

Query: 653 IE 654
           ++
Sbjct: 587 VQ 588

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 3e-06
 Identities = 45/339 (13%), Positives = 88/339 (25%), Gaps = 117/339 (34%)

Query: 29  YYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWSAVGFLDHRKSENPCE--DLGRKFFQEL 86
           ++L+  LK C +            E  + +L      L ++   N     D        +
Sbjct: 185 FWLN--LKNCNS-----------PETVLEMLQK----LLYQIDPNWTSRSDHSSNIKLRI 227

Query: 87  -----RARSFFQQSSNNKSLFVMHDLINDLAHWAA-----------------------GE 118
                  R   +       L V+ + + +   W A                         
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLN-VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286

Query: 119 IYFTMDYTSEV-NKQQS---FSK-------NLRHLSC--------ICGKY--DGVKRFE- 156
            + ++D+ S      +      K       +L             I  +   DG+  ++ 
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346

Query: 157 -DLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFS---------LCGYW--- 203
               N   L T +   L+      L  +   K+F   RL VF          L   W   
Sbjct: 347 WKHVNCDKLTTIIESSLNV-----LEPAEYRKMFD--RLSVFPPSAHIPTILLSLIWFDV 399

Query: 204 ISELPDSI-----------GDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLR 252
           I      +              +     ++    +    +  N+ Y LH   ++     +
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTI-SIPSIYLELKVKLENE-YALHRSIVDHYNIPK 457

Query: 253 KLCAGMGNLIKL-----------HHLNN-SNTDSLEEMP 279
              +   +LI             HHL N  + + +    
Sbjct: 458 TFDS--DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 5e-06
 Identities = 47/313 (15%), Positives = 99/313 (31%), Gaps = 66/313 (21%)

Query: 531 WRSETDH--LGSQNSVVCRDTL---NQVLLAGPLKPRLPKLEELE--ISNIKNETYIWKR 583
            ++E     + ++  +  RD L   NQV     +  RL    +L   +  ++    +   
Sbjct: 98  IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV-SRLQPYLKLRQALLELRPAKNV--- 153

Query: 584 HNGFLQ-DISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCK---GLVK 639
               +   + S K            +  +     +  C++  ++ +L L +C     +++
Sbjct: 154 ---LIDGVLGSGK----------TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200

Query: 640 LPQSLLSLSSLREIEIYNCSSFVSFPEVALPSKVRSISIHR--CDALKSLPEAWMCDANL 697
           + Q LL           + SS +     ++ +++R +   +   + L  L      +A  
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ--NAKA 258

Query: 698 SLEILTISRCHSLTYIAEVQLPPSLKNVVIRNCDNVRTLTVEEGIQSSSSRRYTSSLLEH 757
                 +  C  L              +  R       L         S+   T   L+H
Sbjct: 259 -WNAFNL-SCKIL--------------LTTRFKQVTDFL---------SAATTTHISLDH 293

Query: 758 LHIESCPSLTCIFSKNELLATLESLEVGNLPPSLKSLEVLSCSKLESIAERL-DNNTSLE 816
                  +LT    K  LL         +LP  + +      S    IAE + D   + +
Sbjct: 294 HS----MTLTPDEVK-SLLLKYLDCRPQDLPREVLTTNPRRLS---IIAESIRDGLATWD 345

Query: 817 TITIISCKNLKNL 829
               ++C  L  +
Sbjct: 346 NWKHVNCDKLTTI 358

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 63.3 bits (154), Expect = 1e-10
 Identities = 19/162 (11%), Positives = 48/162 (29%), Gaps = 6/162 (3%)

Query: 183 SILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHT 242
             +       +L+   L    ++ +         + +++L   ++  + +++    NL  
Sbjct: 182 YDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEH 241

Query: 243 LSLEG----CRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGK 298
             L G    C  LR   +    +  +            E    +  L      C   +  
Sbjct: 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPA 301

Query: 299 DSGSRLRELKL--LTHLRGTLTISKLENAQLDGKKNLKVLML 338
               RL  LK      L G  + ++    + + +   + +  
Sbjct: 302 PFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDA 343

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 50.2 bits (120), Expect = 2e-06
 Identities = 26/212 (12%), Positives = 53/212 (25%), Gaps = 13/212 (6%)

Query: 188 LFKLQRLRVFSLCGYWISELPDS--IGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSL 245
                R++   L    I  +  +        L +LNL    I  +   V     L TL L
Sbjct: 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDL 198

Query: 246 EGCRGLRKLCAGMGNLIKLHHLN-NSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRL 304
              + L  +     +   +  ++  +N   L  +   +     L+           G+  
Sbjct: 199 SSNK-LAFMGPEFQSAAGVTWISLRNN--KLVLIEKALRFSQNLEHF------DLRGNGF 249

Query: 305 RELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKP 364
               L         +  +    +                    +    +      D L  
Sbjct: 250 HCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIA 309

Query: 365 HKNLEQFFISGYGGTKFPIWLGDSSFSNLVTL 396
            K  E   +SG G     +     + +    +
Sbjct: 310 LKRKEHALLSGQGSETERLECERENQARQREI 341

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 61.5 bits (150), Expect = 3e-10
 Identities = 16/130 (12%), Positives = 37/130 (28%), Gaps = 4/130 (3%)

Query: 183 SILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHT 242
             +       +L+   L    ++ +         + +++L   ++  + +++    NL  
Sbjct: 182 YDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEH 241

Query: 243 LSLEG----CRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGK 298
             L G    C  LR   +    +  +            E    +  L      C   +  
Sbjct: 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPA 301

Query: 299 DSGSRLRELK 308
               RL  L 
Sbjct: 302 PFADRLIALG 311

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 17/107 (15%), Positives = 33/107 (30%), Gaps = 7/107 (6%)

Query: 188 LFKLQRLRVFSLCGYWISELP--DSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSL 245
                R++   L    I  +   +       L +LNL    I  +   V     L TL L
Sbjct: 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDL 198

Query: 246 EGCRGLRKLCAGMGNLIKLHHLN-NSNTDSLEEMPLGIGKLTCLQTL 291
              + L  +     +   +  ++  +N   L  +   +     L+  
Sbjct: 199 SSNK-LAFMGPEFQSAAGVTWISLRNN--KLVLIEKALRFSQNLEHF 242

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 25/138 (18%), Positives = 54/138 (39%), Gaps = 16/138 (11%)

Query: 207 LPDSIGDLRYLRYLNLSGTQIRTLPESV-NKLYNLHTLSLEGCRGLRKLCAGM-GNLIKL 264
           + +   +    +   ++ + ++    S+    +N+  L L G   L ++ A       KL
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKL 60

Query: 265 HHLN-NSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTIS--K 321
             LN +SN   L E    +  L+ L+TL +      + + ++EL +   +  TL  +   
Sbjct: 61  ELLNLSSN--VLYETL-DLESLSTLRTL-DL-----NNNYVQELLVGPSIE-TLHAANNN 110

Query: 322 LENAQLDGKKNLKVLMLR 339
           +        +  K + L 
Sbjct: 111 ISRVSCSRGQGKKNIYLA 128

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 19/111 (17%), Positives = 41/111 (36%), Gaps = 11/111 (9%)

Query: 183 SILPKLFK-LQRLRVFSLCGYWISELP-DSIGDLRYLRYLNLSGTQIRTLPESVNKLYNL 240
             L  L +    ++   L G  +S++    +     L  LNLS   +    + +  L  L
Sbjct: 24  QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTL 82

Query: 241 HTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTL 291
            TL L     +++L         +  L+ +N  ++  +    G+    + +
Sbjct: 83  RTLDLNNNY-VQEL----LVGPSIETLHAANN-NISRVSCSRGQG--KKNI 125

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 61.1 bits (148), Expect = 9e-10
 Identities = 55/255 (21%), Positives = 81/255 (31%), Gaps = 55/255 (21%)

Query: 185 LPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLY------ 238
           LP L     LR   + G  ++ LP     L  L   +   T +  LP  + KL+      
Sbjct: 76  LPALPP--ELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQL 133

Query: 239 --------NLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQT 290
                    L  LS+   + L  L A    L KL   NN     L  +P+    L  L  
Sbjct: 134 TSLPVLPPGLQELSVSDNQ-LASLPALPSELCKLWAYNN----QLTSLPMLPSGLQELSV 188

Query: 291 LCNFVVGKDSGSRLREL-KLLTHLRGTLTISKLENAQLDGK-KNLKVLMLRWTNSTDGSS 348
             N         +L  L  L + L   L         L      LK L++       G+ 
Sbjct: 189 SDN---------QLASLPTLPSELY-KLWAYNNRLTSLPALPSGLKELIV------SGNR 232

Query: 349 LREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLP 408
           L                  L++  +SG   T  P+         L++L      + T LP
Sbjct: 233 LTSLPVLPS---------ELKELMVSGNRLTSLPMLPS-----GLLSLSVYRNQL-TRLP 277

Query: 409 -SVGQLPSLKHLAVR 422
            S+  L S   + + 
Sbjct: 278 ESLIHLSSETTVNLE 292

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.9 bits (119), Expect = 3e-06
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 7/84 (8%)

Query: 204 ISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIK 263
           ++ LPD +     +  L +    + +LP        L TL + G + L  L      L++
Sbjct: 52  LTTLPDCLPAH--ITTLVIPDNNLTSLPAL---PPELRTLEVSGNQ-LTSLPVLPPGLLE 105

Query: 264 LHHLNNSNTDSLEEMPLGIGKLTC 287
           L   +N  T  L  +P G+ KL  
Sbjct: 106 LSIFSNPLT-HLPALPSGLCKLWI 128

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.4 bits (110), Expect = 3e-05
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 9/87 (10%)

Query: 185 LPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLS 244
           LP L     L+   + G  ++ LP    +L+ L    +SG ++ +LP        L +LS
Sbjct: 216 LPAL--PSGLKELIVSGNRLTSLPVLPSELKEL---MVSGNRLTSLPML---PSGLLSLS 267

Query: 245 LEGCRGLRKLCAGMGNLIKLHHLNNSN 271
           +   + L +L   + +L     +N   
Sbjct: 268 VYRNQ-LTRLPESLIHLSSETTVNLEG 293

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 7/77 (9%)

Query: 217 LRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLE 276
              LN+  + + TLP+ +    ++ TL +     L  L A    L  L    N     L 
Sbjct: 42  NAVLNVGESGLTTLPDCLPA--HITTLVIPDNN-LTSLPALPPELRTLEVSGN----QLT 94

Query: 277 EMPLGIGKLTCLQTLCN 293
            +P+    L  L    N
Sbjct: 95  SLPVLPPGLLELSIFSN 111

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.0 bits (101), Expect = 3e-04
 Identities = 21/139 (15%), Positives = 42/139 (30%), Gaps = 8/139 (5%)

Query: 185 LPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLP-ESVNKLYNLHTL 243
           LP L     L   S+    ++ LP+S+  L     +NL G  +     +++ ++ +    
Sbjct: 256 LPML--PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGY 313

Query: 244 SLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSR 303
           S    R      +       LH           E     G+         F    ++ + 
Sbjct: 314 SGPIIRFDMAGASAPRETRALHLAAADWLVPARE-----GEPAPADRWHMFGQEDNADAF 368

Query: 304 LRELKLLTHLRGTLTISKL 322
              L  L+     +  +  
Sbjct: 369 SLFLDRLSETENFIKDAGF 387

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.9 bits (143), Expect = 4e-09
 Identities = 28/254 (11%), Positives = 63/254 (24%), Gaps = 38/254 (14%)

Query: 172 LSNSSQGFLAHSILPKLFKLQRLRVFSLCGYW---ISELPDSIGDLRYLRYLNLSGTQIR 228
                +     + +    +     +   C         +  S         +      I 
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196

Query: 229 TLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCL 288
            + ++V +L  L    +     + +            +     T       L    L  L
Sbjct: 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT-----EDLKWDNLKDL 251

Query: 289 QTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSS 348
             +            +     LT L     +  L          ++++ +       G  
Sbjct: 252 TDV-----------EVYNCPNLTKL--PTFLKAL--------PEMQLINVACNRGISGEQ 290

Query: 349 LREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMC---T 405
           L++       L      + ++  +I       FP+   ++S   +  L   +C       
Sbjct: 291 LKD---DWQALADAPVGEKIQIIYIGYNNLKTFPV---ETSLQKMKKLGMLECLYNQLEG 344

Query: 406 TLPSVGQLPSLKHL 419
            LP+ G    L  L
Sbjct: 345 KLPAFGSEIKLASL 358

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.1 bits (115), Expect = 9e-06
 Identities = 60/528 (11%), Positives = 143/528 (27%), Gaps = 118/528 (22%)

Query: 200 CGYWISELPDSIGDLRYLRYLNLSGTQIR-TLPESVNKLYNLHTLSLEG----CRGLRKL 254
              W ++   S+     +  L+L G      +P+++ +L  L  L+L             
Sbjct: 66  LDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFG 125

Query: 255 CAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVG-------KDSGSRLREL 307
             G+   +             +       +      + + +         K S     + 
Sbjct: 126 PKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD 185

Query: 308 KLLTHLRGTLT-----ISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDML 362
             +  L   +T     + +L          L+   +   +     ++ EA  +    +  
Sbjct: 186 TQIGQLSNNITFVSKAVMRL--------TKLRQFYMG-NSPFVAENICEA-WENENSEYA 235

Query: 363 KPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLP-SVGQLPSLKHLAV 421
           + +K                +     +  +L  ++  +C   T LP  +  LP ++ + V
Sbjct: 236 QQYKTE-------------DLKWD--NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280

Query: 422 R--RMSRVRRLGSEFYGNDTPIPFPCLETLRF-ENLLEWEDWIPHGSTQGVEGFPKLREL 478
              R     +L  ++           ++ +    N L+          +      K+++L
Sbjct: 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK------TFPVE--TSLQKMKKL 332

Query: 479 EVIGCS--KLKGTFPE--HLPALEML-------------VIGGCEELLV------SITSL 515
            ++ C   +L+G  P       L  L               G  E++         +  +
Sbjct: 333 GMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYI 392

Query: 516 PALSKLEIGGCKKVVW---------RSETDHLGSQNSVVCRDTLNQVL------LAGPLK 560
           P  +  +      +             +  +    +    +      +      ++   K
Sbjct: 393 P--NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK 450

Query: 561 P---RLPKLEELEISNIKNETYIWKRHN---GFLQDISSLKRLTIGWCPTLQSLVAEEEK 614
                   L  + +             N      ++    +         L S+     K
Sbjct: 451 ELFSTGSPLSSINLMG-----------NMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK 499

Query: 615 -----DQQQLCELSCRLEYLLLNDCKGLVKLPQSLLSLSSLREIEIYN 657
                D  +   L   L  + L+      K P   L+ S+L+   I N
Sbjct: 500 LTKLSDDFRATTLP-YLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRN 545

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.3 bits (113), Expect = 2e-05
 Identities = 22/118 (18%), Positives = 35/118 (29%), Gaps = 13/118 (11%)

Query: 183 SILPKLFKLQRLRVFSLCGYWISELPDSI--GDLRYLRYLNLSGTQIRTLPESVNKLYNL 240
                      L    L    +++L D      L YL  ++LS       P        L
Sbjct: 479 DENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTL 538

Query: 241 ------HTLSLEGCRGLRKLCAGMGNLIKLHHLN-NSNTDSLEEMPLGIGKLTCLQTL 291
                 +    +G R LR+   G+     L  L   SN   + ++   I     +  L
Sbjct: 539 KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN--DIRKVNEKI--TPNISVL 592

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.8 bits (109), Expect = 5e-05
 Identities = 16/112 (14%), Positives = 32/112 (28%), Gaps = 12/112 (10%)

Query: 183 SILPKLFKLQRLRVFSLCGYWI-------SELPDSIGDLRYLRYLNLSGTQIRTLPESVN 235
               +      L+ F +             E P+ I     L  L +    IR + E + 
Sbjct: 527 KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI- 585

Query: 236 KLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLN---NSNTDSLEEMPLGIGK 284
              N+  L ++    +    + +   I+        +   D      L I +
Sbjct: 586 -TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDIKR 636

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.5 bits (142), Expect = 6e-09
 Identities = 34/198 (17%), Positives = 66/198 (33%), Gaps = 20/198 (10%)

Query: 155 FEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISEL-PDSIGD 213
              + ++            +     ++ ++   L ++  +   +L  ++   +  ++   
Sbjct: 224 NSTIQSLWLGT------FEDMDDEDISPAVFEGLCEMS-VESINLQKHYFFNISSNTFHC 276

Query: 214 LRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGM-GNLIKLHHLN-NSN 271
              L+ L+L+ T +  LP  +  L  L  L L   +    LC     N   L HL+   N
Sbjct: 277 FSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANK-FENLCQISASNFPSLTHLSIKGN 335

Query: 272 TDSLEEMPLGIGKLTCLQTL-------CNFVVGKDSGSRLRELKLLTHLRGTLTISKLEN 324
           T  LE     +  L  L+ L                   L  L+ L +L        L+ 
Sbjct: 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSL-NLSYN-EPLSLKT 393

Query: 325 AQLDGKKNLKVLMLRWTN 342
                   L++L L +T 
Sbjct: 394 EAFKECPQLELLDLAFTR 411

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.8 bits (109), Expect = 5e-05
 Identities = 24/145 (16%), Positives = 55/145 (37%), Gaps = 18/145 (12%)

Query: 155 FEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISEL-PDSIGD 213
             +   ++ L       L ++    ++   LPK F  ++L+V       I  L  + +  
Sbjct: 125 LHNQKTLESLY------LGSNH---ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS 175

Query: 214 LRYLR--YLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGN-----LIKLHH 266
           L+      LNL+G  I  +           +L+  G + L  +  G+ N     L     
Sbjct: 176 LQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTF 235

Query: 267 LNNSNTDSLEEMPLGIGKLTCLQTL 291
            +  + D    +  G+ +++ ++++
Sbjct: 236 EDMDDEDISPAVFEGLCEMS-VESI 259

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 21/115 (18%), Positives = 34/115 (29%), Gaps = 9/115 (7%)

Query: 183 SILPKLFK-LQRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTLPESV-NKLYN 239
           +I    F  L  L    L    I  +  D+      L  L L+   +  + E+  +    
Sbjct: 47  TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA 106

Query: 240 LHTLSLEGCRGLRKLCAGM-GNLIKLHHLN-NSNTDSLEEMPLG-IGKLTCLQTL 291
           L  L       +  +      N   L  L   SN   +  + L        L+ L
Sbjct: 107 LKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSN--HISSIKLPKGFPTEKLKVL 158

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 58.7 bits (142), Expect = 6e-09
 Identities = 113/643 (17%), Positives = 213/643 (33%), Gaps = 73/643 (11%)

Query: 155 FEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDL 214
            + L   + L       LS +    +  S  P L +LQ L + S       +  ++  +L
Sbjct: 20  PQVLNTTERLL------LSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID-KEAFRNL 72

Query: 215 RYLRYLNLSGTQIRTLPESV-NKLYNLHTLSLEGCR-----GLRKLCAGMGNLIKLHHLN 268
             LR L+L  ++I  L       L++L  L L  C              +  L +L  L+
Sbjct: 73  PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRL-DLS 131

Query: 269 NSNTDSLEEMPLGIGKLTCLQTL----CNF-VVGKDSGSRLRELKLLT-HLRGTLTISKL 322
            +   SL   P   GKL  L+++        +V +     L+   L    L      S++
Sbjct: 132 KNQIRSLYLHPS-FGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV 190

Query: 323 ENAQLDGKKNLKVLMLRWTN------STDGSSLREAETQKGVLDMLKPHKNLEQFFISGY 376
                      + ++L   +      + D +        K     L    ++       +
Sbjct: 191 SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250

Query: 377 GGTKFPIW-LGDSSFSNLVTLKFEDCGMCTTLPSV-GQLPSLKHLAVR--RMSRVRRLGS 432
                        + S++  L      + +    V   L  LK L +   +++++     
Sbjct: 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA--DE 308

Query: 433 EFYGNDTPIPFPCLETLRFE-NLLEWEDWIPHGSTQGVEGFPKLRELEVIGC--SKLKGT 489
            FYG         L+ L    NLL     +   +     G PK+  +++     + ++  
Sbjct: 309 AFYG------LDNLQVLNLSYNLL---GELYSSNFY---GLPKVAYIDLQKNHIAIIQDQ 356

Query: 490 FPEHLPALEMLVIGGCEELLVSITSLPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDT 549
             + L  L+ L +      L +I  +P++  + + G K     +      + N +   + 
Sbjct: 357 TFKFLEKLQTLDLRDNA--LTTIHFIPSIPDIFLSGNK---LVTLPKINLTANLIHLSEN 411

Query: 550 LNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLV 609
             + L       R+P L+ L ++     +      +    +  SL++L +G       L 
Sbjct: 412 RLENLDILYFLLRVPHLQILILNQ-NRFSSCSG--DQTPSENPSLEQLFLGENM--LQLA 466

Query: 610 AEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSLLS-LSSLREIEIYNCSSFVSFPEVA 668
            E E        LS  L+ L LN    L  LP  + S L++LR + + +           
Sbjct: 467 WETELCWDVFEGLS-HLQVLYLNHNY-LNSLPPGVFSHLTALRGLSLNSN-RLTVLSHND 523

Query: 669 LPSKVRSISIHRCDALKSLPEAWMCDANLSLEILTISRCHSLTYIAEVQLPPSLKNVVIR 728
           LP+ +  + I R + L +          +SL +L I+    +           L      
Sbjct: 524 LPANLEILDISR-NQLLAPNPDVF----VSLSVLDITHNKFICECELSTFINWL------ 572

Query: 729 NCDNVRTLTVEEGIQSSSSRRYTSSLLEHLHIESCPSLTCIFS 771
           N  NV        I       ++   L  L  E C     + S
Sbjct: 573 NHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKS 615

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.7 bits (142), Expect = 7e-09
 Identities = 14/88 (15%), Positives = 33/88 (37%), Gaps = 4/88 (4%)

Query: 204 ISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIK 263
           I+ +  +I  L  L+ +  + +       +V    +    + +  +          NL  
Sbjct: 437 ITFISKAIQRLTKLQIIYFANSPFTYDNIAV----DWEDANSDYAKQYENEELSWSNLKD 492

Query: 264 LHHLNNSNTDSLEEMPLGIGKLTCLQTL 291
           L  +   N  ++ ++P  +  L  LQ+L
Sbjct: 493 LTDVELYNCPNMTQLPDFLYDLPELQSL 520

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 55.3 bits (133), Expect = 7e-08
 Identities = 23/193 (11%), Positives = 55/193 (28%), Gaps = 15/193 (7%)

Query: 133 QSFSKNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQ 192
           + F    + L+      D + R  ++  I+             +       I   + +L 
Sbjct: 389 KMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLT 448

Query: 193 RLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLR 252
           +L++        +    ++                     S + L +L  + L  C  + 
Sbjct: 449 KLQIIYFANSPFTYDNIAVDWEDANSDYAKQ---YENEELSWSNLKDLTDVELYNCPNMT 505

Query: 253 KLCAGMGNLIKLHHLN---------NSNTDSLEEMPLGIGKLTCLQTL---CNFVVGKDS 300
           +L   + +L +L  LN                  +         +Q      N +    +
Sbjct: 506 QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA 565

Query: 301 GSRLRELKLLTHL 313
            + L+++  L  L
Sbjct: 566 SASLQKMVKLGLL 578

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.1 bits (130), Expect = 2e-07
 Identities = 82/649 (12%), Positives = 175/649 (26%), Gaps = 137/649 (21%)

Query: 203 WISELPDSIGDLRYLRYLNLSGTQIRT-LPESVNKLYNLHTLSLEGCRGLRKLCAGMG-- 259
           W  +    + +   +  L+L+G   +  +P+++ +L  L  LS              G  
Sbjct: 311 WGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHS-ETVSGRLFGDE 369

Query: 260 NLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLR-GTLT 318
            L         +   +    + +     L          +    ++ +K  + +      
Sbjct: 370 ELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQ 429

Query: 319 ISKLEN------AQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFF 372
           I  L N        +     L+++          S            D    +    +  
Sbjct: 430 IGNLTNRITFISKAIQRLTKLQIIYFA------NSPFTYDNIAVDWEDANSDYAKQYENE 483

Query: 373 ISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLP-SVGQLPSLKHLAVRRMSRVRRLG 431
              +               +L  ++  +C   T LP  +  LP L+ L +     +    
Sbjct: 484 ELSWSN-----------LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQ 532

Query: 432 SEFYGNDTPIPFPCLETLRF----ENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCS--K 485
            +               ++      N LE     P  +        K+ +L ++ C   K
Sbjct: 533 LKADWTRLADDEDTGPKIQIFYMGYNNLE---EFPASA-----SLQKMVKLGLLDCVHNK 584

Query: 486 LKGTFPE--HLPALEMLVIGGCEELLVSITSLPALSKLEIGGCKKVVWRSETDHLGSQNS 543
           ++           L  L +         I  +P     +                     
Sbjct: 585 VR-HLEAFGTNVKLTDLKLDYN-----QIEEIPE----DFCAF----------------- 617

Query: 544 VVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNE-TYIWKRHNGFLQDISSLKRLTIGWC 602
                                ++E L  S+  N+  YI   +    + +  +  +   + 
Sbjct: 618 -------------------TDQVEGLGFSH--NKLKYI--PNIFNAKSVYVMGSVDFSYN 654

Query: 603 PTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSLLS-LSSLREIEIYNCSSF 661
             + S              ++     + L+  + + K P  L +  S +  I + N    
Sbjct: 655 K-IGSEGRNISCSMDDYKGIN--ASTVTLSYNE-IQKFPTELFATGSPISTIILSNN-LM 709

Query: 662 VSFPEVALPSKVRSI----SIHRCD----ALKSLPEAWMCDANLSLEILTISRCHSLTYI 713
            S PE +L  K  +      +   D     L SL + +       L  + +S     +  
Sbjct: 710 TSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNC-FSSF 768

Query: 714 AEVQLPPSLKNVVIRNCDNVRTLTVEEGIQSSSSRRYTS--------SLLEHLHIESCPS 765
                P         N   ++   +     +  +R              L  L I S   
Sbjct: 769 -----PTQ-----PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-D 817

Query: 766 LTCIFSKNELLATLESLEV-GNLPPSLKSLEVLS-CSKLESIAERLDNN 812
           +  +    +L   L  L++  N      S++V S C  +E+    L  +
Sbjct: 818 IRKVDE--KLTPQLYILDIADN---PNISIDVTSVCPYIEAGMYVLLYD 861

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.0 bits (122), Expect = 2e-06
 Identities = 23/143 (16%), Positives = 33/143 (23%), Gaps = 30/143 (20%)

Query: 155 FEDLYNIQHLRTFLPVCLSN----SSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDS 210
           F     I  +       LSN    S                  L    L    ++ L D 
Sbjct: 693 FATGSPISTII------LSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDD 746

Query: 211 I--GDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLN 268
                L YL  +++S     + P        L    +                   H  +
Sbjct: 747 FRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGI------------------RHQRD 788

Query: 269 NSNTDSLEEMPLGIGKLTCLQTL 291
                 L + P GI     L  L
Sbjct: 789 AEGNRILRQWPTGITTCPSLIQL 811

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.3 bits (120), Expect = 2e-06
 Identities = 36/273 (13%), Positives = 69/273 (25%), Gaps = 37/273 (13%)

Query: 154 RFEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDSIGD 213
                  +       P            H     L   QRL +  L    I+  P+ +  
Sbjct: 358 SETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE-MKP 416

Query: 214 LRYLRYLNLSGT-------QIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHH 266
           ++    ++L  T       +I  + +++ +L  L  +              +        
Sbjct: 417 IKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSD 475

Query: 267 LNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQ 326
                    E   L    L  L  +            L     +T L     +  L    
Sbjct: 476 YAK----QYENEELSWSNLKDLTDV-----------ELYNCPNMTQLPD--FLYDL---- 514

Query: 327 LDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLG 386
                 L+ L +        + L+   T+  + D       ++ F++      +FP    
Sbjct: 515 ----PELQSLNIACNRGISAAQLKADWTR--LADDEDTGPKIQIFYMGYNNLEEFPASAS 568

Query: 387 DSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHL 419
                 L  L      +   L + G    L  L
Sbjct: 569 LQKMVKLGLLDCVHNKV-RHLEAFGTNVKLTDL 600

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 55.6 bits (135), Expect = 3e-08
 Identities = 48/286 (16%), Positives = 89/286 (31%), Gaps = 40/286 (13%)

Query: 137 KNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRV 196
                          V   E+L +I  L       ++         + +  +  L  L  
Sbjct: 22  AEGIRAVLQKASVTDVVTQEELESITKL------VVAGEKV-----ASIQGIEYLTNLEY 70

Query: 197 FSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCA 256
            +L G  I+++   + +L  L  L +   +I  +  ++  L NL  L L     +  + +
Sbjct: 71  LNLNGNQITDIS-PLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDN-ISDI-S 126

Query: 257 GMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLC---NFVVGKDSGSRLRELKLLTHL 313
            + NL K++ LN    +        +  +T L  L    + V      + L +L  L  L
Sbjct: 127 PLANLTKMYSLNLGA-NHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSL-SL 184

Query: 314 RGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFI 373
                I  +    L    +L          TD             +  +     L    I
Sbjct: 185 NYNQ-IEDISP--LASLTSLHYFTAYVNQITD-------------ITPVANMTRLNSLKI 228

Query: 374 SGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHL 419
                T        ++ S L  L+     + + + +V  L  LK L
Sbjct: 229 GNNKITDLS---PLANLSQLTWLEIGTNQI-SDINAVKDLTKLKML 270

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 53.3 bits (129), Expect = 1e-07
 Identities = 37/243 (15%), Positives = 86/243 (35%), Gaps = 33/243 (13%)

Query: 183 SILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHT 242
           S +  L  L ++   +L           + ++  L YL ++ ++++ +   +  L +L++
Sbjct: 123 SDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYS 181

Query: 243 LSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTL---CNFVVGKD 299
           LSL   + +  + + + +L  LH+        + ++   +  +T L +L    N +    
Sbjct: 182 LSLNYNQ-IEDI-SPLASLTSLHYFTAYVN-QITDIT-PVANMTRLNSLKIGNNKITDLS 237

Query: 300 SGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVL 359
             + L +L  L  +     IS +    +     LK+L +     +D             +
Sbjct: 238 PLANLSQLTWL-EIGTNQ-ISDINA--VKDLTKLKMLNVGSNQISD-------------I 280

Query: 360 DMLKPHKNLEQFFISGYGGTKFPIWLGDSSFS---NLVTLKFEDCGMCTTLPSVGQLPSL 416
            +L     L   F++        +           NL TL      + T +  +  L  +
Sbjct: 281 SVLNNLSQLNSLFLNNNQLGNEDM----EVIGGLTNLTTLFLSQNHI-TDIRPLASLSKM 335

Query: 417 KHL 419
              
Sbjct: 336 DSA 338

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.5 bits (119), Expect = 3e-06
 Identities = 37/240 (15%), Positives = 86/240 (35%), Gaps = 33/240 (13%)

Query: 185 LPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLS 244
           +     L       L    ++++  +  +L  +  L ++G ++ ++   +  L NL  L+
Sbjct: 15  IFPDADLAEGIRAVLQKASVTDVV-TQEELESITKLVVAGEKVASIQG-IEYLTNLEYLN 72

Query: 245 LEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLC---NFVVGKDSG 301
           L G + +  + + + NL+KL +L       + ++   +  LT L+ L    + +      
Sbjct: 73  LNGNQ-ITDI-SPLSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELYLNEDNISDISPL 128

Query: 302 SRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDM 361
           + L ++  L +L     +S L    L     L  L +  +   D             +  
Sbjct: 129 ANLTKMYSL-NLGANHNLSDLSP--LSNMTGLNYLTVTESKVKD-------------VTP 172

Query: 362 LKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMC--TTLPSVGQLPSLKHL 419
           +    +L    ++             S  ++L +L +    +   T +  V  +  L  L
Sbjct: 173 IANLTDLYSLSLNYNQIEDI------SPLASLTSLHYFTAYVNQITDITPVANMTRLNSL 226

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.9 bits (134), Expect = 3e-08
 Identities = 34/238 (14%), Positives = 78/238 (32%), Gaps = 9/238 (3%)

Query: 85  ELRARSFFQQSSNNKSLFVMHDLINDLAHWAAGEIYFTMDYTSEVNKQQSFSKNLRHLSC 144
           + R   + + S+ ++ LF     +       +           E   +      +  +  
Sbjct: 335 KDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRA 394

Query: 145 ICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWI 204
           +       +  +    ++ +   +     +  +            +   +RV  L    +
Sbjct: 395 LDPLLYEKETLQYFSTLKAV-DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL 453

Query: 205 SELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKL 264
           + L   +  L  + +L+LS  ++R LP ++  L  L  L       L  +  G+ NL +L
Sbjct: 454 TVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENV-DGVANLPRL 510

Query: 265 HHLN-NSNTDSLEEMPLGIGKLTCLQTLC---NFVVGKDSGSRLRELKLLTHLRGTLT 318
             L   +N          +     L  L    N +  ++ G + R  ++L  +   LT
Sbjct: 511 QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC-QEEGIQERLAEMLPSVSSILT 567

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.9 bits (135), Expect = 4e-08
 Identities = 92/537 (17%), Positives = 171/537 (31%), Gaps = 85/537 (15%)

Query: 183 SILPKLFK-LQRLRVFSLCGYWISELPDSI-GDLRYLRYLNLSGTQIRTLPESV-NKLYN 239
            I     +    L+V  L    I+ +       L  L +L+LS   + +L  S    L +
Sbjct: 40  YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS 99

Query: 240 LHTLSLEGCRGLRKL--CAGMGNLIKLHHLNNSNTDSLEEMPLG-IGKLTCLQTL---CN 293
           L  L+L G    + L   +   NL  L  L   N ++  E+       LT L  L     
Sbjct: 100 LKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158

Query: 294 FVVGKDSGSRLRELKLLTHLR-GTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREA 352
            +    S S L+ ++ + HL       + L     D   +++ L LR             
Sbjct: 159 SLRNYQSQS-LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR------------- 204

Query: 353 ETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQ 412
                         NL +F  S     +    +   +F   V        +   L  + +
Sbjct: 205 ------------DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILE 252

Query: 413 LPSLK--HLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVE 470
           L  ++     +  +       S+       +    +  L       + D      +    
Sbjct: 253 LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYD-----LSTVYS 307

Query: 471 GFPKLRELEVIGC--SKLKGTFPEHLPALEMLVIGGCEELLVSITSLPALSKLEIGGCKK 528
              K++ + V       +  +F +HL +LE L +         +      +    G    
Sbjct: 308 LLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN-----LMVEEYLKNSACKGAWPS 362

Query: 529 VVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFL 588
           +    +T  L SQN +       ++LL       L  L  L+IS            +   
Sbjct: 363 L----QTLVL-SQNHLRSMQKTGEILL------TLKNLTSLDISR----NTFHPMPDSC- 406

Query: 589 QDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSLLSLS 648
           Q    ++ L +     ++ +             +   LE L +++   L       L L 
Sbjct: 407 QWPEKMRFLNLSSTG-IRVVKT----------CIPQTLEVLDVSNNN-LDSFS---LFLP 451

Query: 649 SLREIEIYNCSSFVSFPEVALPSKVRSISIHRCDALKSLPEAWMCDANLSLEILTIS 705
            L+E+ I       + P+ +L   +  + I R   LKS+P+    D   SL+ + + 
Sbjct: 452 RLQELYISRN-KLKTLPDASLFPVLLVMKISRNQ-LKSVPDGIF-DRLTSLQKIWLH 505

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.1 bits (107), Expect = 8e-05
 Identities = 29/188 (15%), Positives = 62/188 (32%), Gaps = 15/188 (7%)

Query: 155 FEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDSIG-- 212
            + L +++ L       LS +                  L+   L    +  +  +    
Sbjct: 330 SQHLKSLEFLD------LSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL 383

Query: 213 -DLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSN 271
             L+ L  L++S      +P+S      +  L+L     +R +         L  L+ SN
Sbjct: 384 LTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTG-IRVV--KTCIPQTLEVLDVSN 440

Query: 272 TDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKK 331
             +L+   L + +L  L    N +      S    L ++  +     +  + +   D   
Sbjct: 441 N-NLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVM-KISRNQ-LKSVPDGIFDRLT 497

Query: 332 NLKVLMLR 339
           +L+ + L 
Sbjct: 498 SLQKIWLH 505

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 53.7 bits (129), Expect = 2e-07
 Identities = 60/402 (14%), Positives = 116/402 (28%), Gaps = 82/402 (20%)

Query: 469 VEGFPKLRELEVIGCSKLKGT------FPEHLPALEMLVIGGCEELL--VSITSL----P 516
                 L+EL++        +      FP+   +L  L I      +   ++  L    P
Sbjct: 152 AATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCP 211

Query: 517 ALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKN 576
            L  L++                     V  + L  +L       R P+LEEL       
Sbjct: 212 NLKSLKLNRA------------------VPLEKLATLLQ------RAPQLEELGTGGYTA 247

Query: 577 ET--YIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDC 634
           E    ++   +  L     L+ L+  W      L A        +  +  RL  L L+  
Sbjct: 248 EVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPA--------VYSVCSRLTTLNLSYA 299

Query: 635 ----KGLVKLPQSLLSLSSLREIEIYNCSSFVSFPEVALP-SKVRSISIHRCDALKSLPE 689
                 LVKL   L     L+ + + +         +A     +R + +   +     P 
Sbjct: 300 TVQSYDLVKL---LCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPN 356

Query: 690 AWMCDANL--------SLEILTISRCHSLTYIAEVQLP---PSLKNVVIRNCDNVRTLTV 738
             + +  L         LE + +  C  +T  A + +    P++    +   +      +
Sbjct: 357 VALTEQGLVSVSMGCPKLESV-LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYL 415

Query: 739 EEGIQSSSSRRYTSSL--LEHLHIESCPSLTCIFSKNELLATLESLEVGNLP-------- 788
                             L  L +    +             +E L V            
Sbjct: 416 TLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHH 475

Query: 789 -----PSLKSLEVLSCSKL-ESIAERLDNNTSLETITIISCK 824
                 SL+ LE+  C    +++        ++ ++ + SC 
Sbjct: 476 VLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS 517

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 48.4 bits (115), Expect = 8e-06
 Identities = 43/302 (14%), Positives = 83/302 (27%), Gaps = 35/302 (11%)

Query: 136 SKNLRHLS-CICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRL 194
             NL+ L        + +     L     L        +   +  +   +   L   + L
Sbjct: 210 CPNLKSLKLNRAVPLEKLATL--LQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKEL 267

Query: 195 RVFSLCGY-WISELPDSIGDLRYLRYLNLSGTQIRT--LPESVNKLYNLHTLSLEGCRGL 251
           R  S       + LP        L  LNLS   +++  L + + +   L  L +      
Sbjct: 268 RCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIED 327

Query: 252 RKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLT 311
             L         L  L    ++     P        L ++              +L+ + 
Sbjct: 328 AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMG---------CPKLESV- 377

Query: 312 HLRGTLTISKLENAQL-DGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQ 370
            L     ++      +   + N+    L          L       G   +++  K+L +
Sbjct: 378 -LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRR 436

Query: 371 FFISGYGGTKFPIWLGDSSFSNLVT----LKFEDCGMC----TTLPSVGQ-LPSLKHLAV 421
             +SG         L D  F  + T    ++             +  V     SL+ L +
Sbjct: 437 LSLSG--------LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEI 488

Query: 422 RR 423
           R 
Sbjct: 489 RD 490

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 48.0 bits (114), Expect = 1e-05
 Identities = 75/542 (13%), Positives = 153/542 (28%), Gaps = 86/542 (15%)

Query: 213 DLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNT 272
           +    R + +      +    + +   + ++ L+G              +          
Sbjct: 41  ERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADF------NLVPDGWGGYVY 94

Query: 273 DSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRL-RELKLLTHLR----GTLTISKLENAQL 327
             +E M      L  +  L   VV  D    + +  K    L        +   L     
Sbjct: 95  PWIEAMSSSYTWLEEI-RLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAI-A 152

Query: 328 DGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGD 387
              +NLK L LR ++  D        +   +      + +L    IS          +  
Sbjct: 153 ATCRNLKELDLRESDVDD-------VSGHWLSHFPDTYTSLVSLNISCLASE-----VSF 200

Query: 388 SSFS-------NLVTLKFEDCGMCTTLPSVGQ-LPSLKHLAVRRMSRVRRLGSEFYGNDT 439
           S+         NL +LK         L ++ Q  P L+ L     +   R         +
Sbjct: 201 SALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDV-----YS 255

Query: 440 PIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPE---HLPA 496
            +            L  + D +P           +L  L +   +       +     P 
Sbjct: 256 GLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPK 315

Query: 497 LEMLVIGGC---EELLVSITSLPALSKLEIGGCKKVVWRSETD--HLGSQNSVVCRDTLN 551
           L+ L +        L V  ++   L +L +   +  V          G  +  +    L 
Sbjct: 316 LQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLE 375

Query: 552 QVLLAGP---------LKPRLPKLEELEISNIKNETYIWKRHNG-------FLQDISSLK 595
            VL             +    P +    +  I+ +   +             ++    L+
Sbjct: 376 SVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLR 435

Query: 596 RLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDC----KGLVKLPQSLLSLSSLR 651
           RL++    T +            +   + ++E L +        G+  +   L    SLR
Sbjct: 436 RLSLSGLLTDKVFEY--------IGTYAKKMEMLSVAFAGDSDLGMHHV---LSGCDSLR 484

Query: 652 EIEIYNCSSF--VSFPEVALPSKVRSISIHRC----DALKSLPEAWMCDANLSLEILTIS 705
           ++EI +C           +    +RS+ +  C     A K L +       L++E++   
Sbjct: 485 KLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMP---KLNVEVIDER 541

Query: 706 RC 707
             
Sbjct: 542 GA 543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 48.0 bits (114), Expect = 1e-05
 Identities = 58/388 (14%), Positives = 111/388 (28%), Gaps = 73/388 (18%)

Query: 472 FPKLRELEVIGCSKLK-----------------GTFPEHLPALEMLVIGGC----EELLV 510
           FPK+R +E+ G                               LE + +       + L +
Sbjct: 65  FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124

Query: 511 SITSLPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELE 570
              S      L +  C+       +            D L  +            L+EL+
Sbjct: 125 IAKSFKNFKVLVLSSCEGF-----ST-----------DGLAAIA------ATCRNLKELD 162

Query: 571 ISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLL 630
           +     +       + F    +SL  L I    +  S         ++L      L+ L 
Sbjct: 163 LRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVS-----FSALERLVTRCPNLKSLK 217

Query: 631 LNDCKGLVKLPQSLLSLSSLREIEIYNCSSFVSFPEVALPS-------KVRSISIHRCDA 683
           LN    L KL   L     L E+     ++ V     +  S       ++R +S      
Sbjct: 218 LNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV 277

Query: 684 LKSLPEAWMCDANLSLEILTISRCHSLTYIAEVQLPPSLKNVVIRNCDNVRTLTVEEGIQ 743
              LP   +      L  L +S     +          L   ++  C  ++ L V + I+
Sbjct: 278 PAYLPA--VYSVCSRLTTLNLSYATVQS--------YDLVK-LLCQCPKLQRLWVLDYIE 326

Query: 744 SSSSRRYTSSL--LEHLHIESCPSLTCIFSKNELLATLESLEVGNLPPSLKSLEVLSCSK 801
            +      S+   L  L +          +       L S+      P L+S+ +  C +
Sbjct: 327 DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV--SMGCPKLESV-LYFCRQ 383

Query: 802 L--ESIAERLDNNTSLETITIISCKNLK 827
           +   ++     N  ++    +   +   
Sbjct: 384 MTNAALITIARNRPNMTRFRLCIIEPKA 411

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 46.0 bits (109), Expect = 5e-05
 Identities = 59/374 (15%), Positives = 105/374 (28%), Gaps = 60/374 (16%)

Query: 183 SILPKLFKLQRL-----RVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKL 237
           +I      L+ L      V  + G+W+S  PD+      L  LN+S         ++ +L
Sbjct: 150 AIAATCRNLKELDLRESDVDDVSGHWLSHFPDT---YTSLVSLNISCLASEVSFSALERL 206

Query: 238 ----YNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCN 293
                NL +L L     L KL   +    +L  L                          
Sbjct: 207 VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELG----------------TGGYTAEVR 250

Query: 294 FVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGK-KNLKVLMLRWTNSTDGSSLREA 352
             V       L   K L  L G           +      L  L L +            
Sbjct: 251 PDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS------- 303

Query: 353 ETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVG- 411
                ++ +L     L++ ++         + +  S+  +L  L+          P+V  
Sbjct: 304 ---YDLVKLLCQCPKLQRLWVL-DYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVAL 359

Query: 412 QLPSLKHLAVRRMSRVRRLGSEFYG-NDTPI-----PFPCLETLRFENLLEWEDWIP--- 462
               L  ++     ++  +        +  +       P +   R   +           
Sbjct: 360 TEQGLVSVS-MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE 418

Query: 463 ---HGSTQGVEGFPKLRELEVIGCSKLKG--TFPEHLPALEMLVIGGCEELLVSITSL-- 515
               G    VE    LR L + G    K       +   +EML +    +  + +  +  
Sbjct: 419 PLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLS 478

Query: 516 --PALSKLEIGGCK 527
              +L KLEI  C 
Sbjct: 479 GCDSLRKLEIRDCP 492

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 42.2 bits (99), Expect = 6e-04
 Identities = 43/290 (14%), Positives = 98/290 (33%), Gaps = 32/290 (11%)

Query: 562 RLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEE----EKDQQ 617
           R PK+  +E+    +        +G+   +             L+ +  +     +   +
Sbjct: 64  RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLE 123

Query: 618 QLCELSCRLEYLLLNDCKGL--VKLPQSLLSLSSLREIEIYNCS----SFVSFPEVA-LP 670
            + +     + L+L+ C+G     L     +  +L+E+++        S           
Sbjct: 124 LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183

Query: 671 SKVRSISIHRC------DALKSLPEAWMCDANLSLEILTISRCHSLTYIAEV-QLPPSLK 723
           + + S++I          AL+ L          +L+ L ++R   L  +A + Q  P L+
Sbjct: 184 TSLVSLNISCLASEVSFSALERLVTRCP-----NLKSLKLNRAVPLEKLATLLQRAPQLE 238

Query: 724 NVVIRNCDNVRTLTVEEGIQSSSSRRYTSSLLEHLHIESCPSLTCIFSKNELLATLESLE 783
            +            V  G+  + S       L  L          + +   + + L +L 
Sbjct: 239 ELGTGGYTAEVRPDVYSGLSVALSG---CKELRCLSGFWDAVPAYLPAVYSVCSRLTTLN 295

Query: 784 VGNLPPSLKSLEVL--SCSKLESIAERLDNNTSLETITII--SCKNLKNL 829
           +         L  L   C KL+ +   + +      + ++  +CK+L+ L
Sbjct: 296 LSYATVQSYDLVKLLCQCPKLQRL--WVLDYIEDAGLEVLASTCKDLREL 343

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.0 bits (128), Expect = 3e-07
 Identities = 77/536 (14%), Positives = 150/536 (27%), Gaps = 150/536 (27%)

Query: 137 KNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRV 196
                               DL  +  L                    +  +  L  L  
Sbjct: 24  AEKMKTVLGKTNVTDTVSQTDLDQVTTL------QADRLG-----IKSIDGVEYLNNLTQ 72

Query: 197 FSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCA 256
            +     ++++   + +L  L  + ++  QI  +   +  L NL  L+L   + +  +  
Sbjct: 73  INFSNNQLTDIT-PLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQ-ITDIDP 129

Query: 257 GMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGT 316
            + NL  L+ L  S+             ++ +  L          + L++L     +   
Sbjct: 130 -LKNLTNLNRLELSSN-----------TISDISALSGL-------TSLQQLSFGNQVTDL 170

Query: 317 LTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGY 376
             ++ L          L+ L +     +D             + +L    NLE    +  
Sbjct: 171 KPLANL--------TTLERLDISSNKVSD-------------ISVLAKLTNLESLIATNN 209

Query: 377 GGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHLAVRRMSRVRRLGSEFYG 436
             +           +NL  L      +   + ++  L +L  L                 
Sbjct: 210 QISDIT---PLGILTNLDELSLNGNQL-KDIGTLASLTNLTDL---------------DL 250

Query: 437 NDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCS--KLKGTFP-EH 493
            +  I                           +     L +L  +     ++    P   
Sbjct: 251 ANNQI-------------------------SNLAPLSGLTKLTELKLGANQISNISPLAG 285

Query: 494 LPALEMLVIGGCE-ELLVSITSLPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQ 552
           L AL  L +   + E +  I++L  L+ L +         S+   + S            
Sbjct: 286 LTALTNLELNENQLEDISPISNLKNLTYLTLYFNN----ISDISPVSS------------ 329

Query: 553 VLLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEE 612
                     L KL+ L   N  N+          + D+SSL  LT      +  L A  
Sbjct: 330 ----------LTKLQRLFFYN--NK----------VSDVSSLANLT-----NINWLSAGH 362

Query: 613 EK--DQQQLCELSCRLEYLLLNDCKGLVKLPQSLLSLSSLREIEIYNCSSFVSFPE 666
            +  D   L  L+ R+  L LND       P +  +  S+    + N +  +  P 
Sbjct: 363 NQISDLTPLANLT-RITQLGLNDQA-WTNAPVNYKANVSIPNT-VKNVTGALIAPA 415

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 53.1 bits (127), Expect = 3e-07
 Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 15/108 (13%)

Query: 185 LPKLF-KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTL 243
           LP+L   L+ L V +     ++ LP+    L Y+   N    Q+  LPE      +L  L
Sbjct: 115 LPELPASLKHLDVDNNQ---LTMLPELPALLEYI---NADNNQLTMLPEL---PTSLEVL 165

Query: 244 SLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTL 291
           S+   + L  L     +L  L    N     LE +P    +    +  
Sbjct: 166 SVRNNQ-LTFLPELPESLEALDVSTNL----LESLPAVPVRNHHSEET 208

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 46.5 bits (110), Expect = 3e-05
 Identities = 15/91 (16%), Positives = 33/91 (36%), Gaps = 10/91 (10%)

Query: 185 LPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHT-- 242
           LP+L     L V S+    ++ LP+    L  L   ++S   + +LP    + ++     
Sbjct: 155 LPEL--PTSLEVLSVRNNQLTFLPELPESLEAL---DVSTNLLESLPAVPVRNHHSEETE 209

Query: 243 --LSLEGCRGLRKLCAGMGNLIKLHHLNNSN 271
                   R +  +   + +L     +   +
Sbjct: 210 IFFRCRENR-ITHIPENILSLDPTCTIILED 239

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.8 bits (127), Expect = 3e-07
 Identities = 86/523 (16%), Positives = 152/523 (29%), Gaps = 109/523 (20%)

Query: 183 SILPKLFK-LQRLRVFSLCGYWISELP-DSIGDLRYLRYLNLSGTQIRTLPESV-NKLYN 239
            +    F     L+V  L    I  +   +   L +L  L L+G  I++L     + L +
Sbjct: 42  HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101

Query: 240 LHTLSLEGCRGLRKLCAGM-GNLIKLHHLN-NSNTDSLEEMPLG--IGKLTCLQTL---- 291
           L  L       L  L     G+L  L  LN   N   ++   L      LT L+ L    
Sbjct: 102 LQKLVAVETN-LASLENFPIGHLKTLKELNVAHN--LIQSFKLPEYFSNLTNLEHLDLSS 158

Query: 292 ---------------------------CNFVVGKDSGSRLRELKLLT-HLRGTLTISKLE 323
                                       N +     G+  +E++L    LR       + 
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA-FKEIRLHKLTLRNNFDSLNVM 217

Query: 324 NAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPI 383
              + G   L+V  L      +  +L + +        L+   NL            +  
Sbjct: 218 KTCIQGLAGLEVHRLVLGEFRNEGNLEKFD-----KSALEGLCNLTIEEFRLAYLDYYLD 272

Query: 384 WLGDSSFSNLVTLKFEDCGMC--TTLPSVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPI 441
            +    F+ L  +            +         +HL +             +G    +
Sbjct: 273 DI-IDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCK---------FGQFPTL 322

Query: 442 PFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEV----IGCSKLKGTFPEHLPAL 497
               L+ L F +          G+       P L  L++    +              +L
Sbjct: 323 KLKSLKRLTFTS-------NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 498 EMLVIGGCE--ELLVSITSLPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLL 555
           + L +       +  +   L  L  L+                           L Q+  
Sbjct: 376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN----------------------LKQMSE 413

Query: 556 AGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKD 615
                  L  L  L+IS+    T+     NG    +SSL+ L +      Q     +   
Sbjct: 414 FSVFLS-LRNLIYLDISH----THTRVAFNGIFNGLSSLEVLKMAGNS-FQENFLPDI-- 465

Query: 616 QQQLCELSCRLEYLLLNDCKGLVKLPQSLLS-LSSLREIEIYN 657
                EL   L +L L+ C+ L +L  +  + LSSL+ + + +
Sbjct: 466 ---FTELR-NLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMAS 503

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.1 bits (107), Expect = 9e-05
 Identities = 42/218 (19%), Positives = 77/218 (35%), Gaps = 28/218 (12%)

Query: 134 SFSKNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQR 193
           S++   +HL  +  K+        L +++ L        +++               L  
Sbjct: 301 SYNFGWQHLELVNCKFGQF-PTLKLKSLKRLT------FTSNK-----GGNAFSEVDLPS 348

Query: 194 LRVFSLCGYWISEL---PDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRG 250
           L    L    +S       S      L+YL+LS   + T+  +   L  L  L  +    
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN- 407

Query: 251 LRKLCAG--MGNLIKLHHLNNSNTDSLEEMPLGI-GKLTCLQTL----CNF--VVGKDSG 301
           L+++       +L  L +L+ S+T        GI   L+ L+ L     +F      D  
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466

Query: 302 SRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLR 339
           + LR L  L  L     + +L     +   +L+VL + 
Sbjct: 467 TELRNLTFL-DLSQCQ-LEQLSPTAFNSLSSLQVLNMA 502

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 51.9 bits (124), Expect = 6e-07
 Identities = 84/465 (18%), Positives = 144/465 (30%), Gaps = 62/465 (13%)

Query: 385 LGDSSFSNLVTLKFEDCGMCTT--LPSVGQ-LPSLKHLAVRRMSRVRRLGSEFYGNDTPI 441
           L  +   +L TLK + C   TT  L S+      +K L +   S   + G     ++   
Sbjct: 132 LAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWL--HELAQ 189

Query: 442 PFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLK----GTFPEHLPAL 497
               LE L F  + E+    P            L  ++V     L+         +L   
Sbjct: 190 HNTSLEVLNF-YMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEF 248

Query: 498 EMLVIGGCEELLVSITSLPALSKLEIGGCKKVVWRSETDHLGSQNSVVC---RDTLNQVL 554
               +     +     +L    KL   G   +              +        L +  
Sbjct: 249 CGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETE 308

Query: 555 LAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEK 614
               L  + P LE LE  N+  +  +        Q    LKRL I      Q +  EE  
Sbjct: 309 DHCTLIQKCPNLEVLETRNVIGDRGL----EVLAQYCKQLKRLRIERGADEQGMEDEEGL 364

Query: 615 --DQ--QQLCELSCRLEYLLLNDCK----GLVKLPQSLLSLSSLREIEIYNCSSFVSFPE 666
              +    L +    LEY+ +         L  +   L +L   R + +         P 
Sbjct: 365 VSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLP- 423

Query: 667 VALPSKVRSISIHRCDALKSLPEAWMCDANLSLEILTISRCHSLTYIAEVQLPPSLKNVV 726
             L + VRS+ I  C  L+             L    ++    L+YI   Q  P+++ ++
Sbjct: 424 --LDNGVRSLLIG-CKKLRRF--------AFYLRQGGLTD-LGLSYIG--QYSPNVRWML 469

Query: 727 IRNCDNVRTLTVEEGIQSSSSRRYTSSLLEHLHIESCPSLTCIFSKNELLATLESLEVGN 786
           +           +EG+   S        L+ L +  C      FS+  + A +  L    
Sbjct: 470 LGYVGE-----SDEGLMEFSRG---CPNLQKLEMRGCC-----FSERAIAAAVTKL---- 512

Query: 787 LPPSLKSLEVLSCSKL---ESIAERLDNNTSLETITIISCKNLKN 828
             PSL+ L V         + + +      ++E I       +  
Sbjct: 513 --PSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQ 555

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 49.6 bits (118), Expect = 3e-06
 Identities = 75/545 (13%), Positives = 164/545 (30%), Gaps = 84/545 (15%)

Query: 213 DLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNT 272
           D     ++ ++     T      +  NL +L L+G          M NLI   +     T
Sbjct: 48  DSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRA-----AMFNLI-PENWGGYVT 101

Query: 273 DSLEEMPLGIGKLTCLQTLCNFV-------VGKDSGSRLRELKLLTHLRGTLTISKLENA 325
             + E+   + +L  +      V       + K     L  LKL        T   L + 
Sbjct: 102 PWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL--DKCSGFTTDGLLSI 159

Query: 326 QLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWL 385
            +   + +K L++  ++ ++       +  K + ++ + + +LE          K    +
Sbjct: 160 -VTHCRKIKTLLMEESSFSE-------KDGKWLHELAQHNTSLEVLNFYMTEFAK----I 207

Query: 386 GDSSF-------SNLVTLKFEDCGMCTTLPSVGQLPSLKHLAVRRMSRVRRLGSEFYGND 438
                        +LV++K  D  +   +       +L+            L  +    +
Sbjct: 208 SPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEF------CGGSLNEDIGMPE 261

Query: 439 TPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPE---HLP 495
             +       L    L        +          ++R+L+++                P
Sbjct: 262 KYMNLVFPRKLCRLGLSYMGP---NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP 318

Query: 496 ALEMLVIGGC---EELLVSITSLPALSKLEIGGCKKVVWRSETDHLGSQNSVV-----CR 547
            LE+L          L V       L +L I          + + L SQ  ++     C+
Sbjct: 319 NLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQ 378

Query: 548 DTLNQVLLAGP---------LKPRLPKLEELEISNIKNETYI--WKRHNGF---LQDISS 593
           + L  + +            +   L  L +  +  +  E  I      NG    L     
Sbjct: 379 E-LEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKK 437

Query: 594 LKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDC----KGLVKLPQSLLSLSS 649
           L+R          + +         + + S  + ++LL       +GL++         +
Sbjct: 438 LRRFAFYLRQGGLTDLGLSY-----IGQYSPNVRWMLLGYVGESDEGLMEF---SRGCPN 489

Query: 650 LREIEIYNCS-SFVSFPEVALP-SKVRSISIHRCDA-LKSLPEAWMCDANLSLEILTISR 706
           L+++E+  C  S  +          +R + +    A +       M     ++E++   R
Sbjct: 490 LQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRR 549

Query: 707 CHSLT 711
              + 
Sbjct: 550 VPEVN 554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 32/294 (10%), Positives = 81/294 (27%), Gaps = 22/294 (7%)

Query: 559 LKPRLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSL----VAEEEK 614
           L  R P L  L++               +   ++            L+S+    +   + 
Sbjct: 68  LSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDL 127

Query: 615 DQQQLCELSC-RLEYLLLNDCKGL--VKLPQSLLSLSSLREIEIYNCS-------SFVSF 664
           D  +L +     LE L L+ C G     L   +     ++ + +   S            
Sbjct: 128 DLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL 187

Query: 665 PEVALPSKVRSISIHRCDALKSLPEAWMCDANLSLEILTISRCHSLTYIAEVQLPPSLKN 724
            +     +V +  +     +       +     SL  + +     L  +   +   +L+ 
Sbjct: 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEE 247

Query: 725 VVIRNCDNVRTLTVE-------EGIQSSSSRRYTSSLLEHLHIESCPSLTCIFSKNELLA 777
               + +    +  +         +          + +  L       +  +     LL 
Sbjct: 248 FCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILF-PFAAQIRKLDLLYALLE 306

Query: 778 TLESLEVGNLPPSLKSLEVLSCSKLESIAERLDNNTSLETITIISCKNLKNLPT 831
           T +   +    P+L+ LE  +      +         L+ + I    + + +  
Sbjct: 307 TEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMED 360

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 43.0 bits (101), Expect = 3e-04
 Identities = 25/154 (16%), Positives = 47/154 (30%), Gaps = 9/154 (5%)

Query: 136 SKNLRHLS-CICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRL 194
            ++L  +        + V  F+   N++        C  + ++          L   ++L
Sbjct: 219 CRSLVSVKVGDFEILELVGFFKAAANLEEF------CGGSLNEDIGMPEKYMNLVFPRKL 272

Query: 195 RVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRT--LPESVNKLYNLHTLSLEGCRGLR 252
               L     +E+P        +R L+L    + T      + K  NL  L      G R
Sbjct: 273 CRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDR 332

Query: 253 KLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLT 286
            L        +L  L        + M    G ++
Sbjct: 333 GLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS 366

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 51.3 bits (122), Expect = 1e-06
 Identities = 28/198 (14%), Positives = 68/198 (34%), Gaps = 37/198 (18%)

Query: 185 LPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLS 244
                +  +    +L    +++   +  +L  +  +  + + I+++ + +  L N+  L 
Sbjct: 17  DDAFAETIKD---NLKKKSVTDAV-TQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLF 71

Query: 245 LEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRL 304
           L G + L  +   + NL  L  L       ++++   +  L  L++L          + +
Sbjct: 72  LNGNK-LTDIK-PLTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSL------EHNGI 121

Query: 305 RELKLLTHLRGTLT-------ISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKG 357
            ++  L HL    +       I+ +    L     L  L L     +D            
Sbjct: 122 SDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISD------------ 167

Query: 358 VLDMLKPHKNLEQFFISG 375
            +  L     L+  ++S 
Sbjct: 168 -IVPLAGLTKLQNLYLSK 184

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 48.9 bits (116), Expect = 5e-06
 Identities = 48/262 (18%), Positives = 96/262 (36%), Gaps = 27/262 (10%)

Query: 137 KNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRV 196
             L  +  I      +K  + +  + ++     + L+ +       + +  L  L+ L  
Sbjct: 40  NELNSIDQIIANNSDIKSVQGIQYLPNVTK---LFLNGNK-----LTDIKPLTNLKNLGW 91

Query: 197 FSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCA 256
             L    I +L  S+ DL+ L+ L+L    I  +   +  L  L +L L   + +  +  
Sbjct: 92  LFLDENKIKDL-SSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNK-ITDI-T 147

Query: 257 GMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTL---CNFVVGKDSGSRLRELKLLTHL 313
            +  L KL  L+  +   + ++   +  LT LQ L    N +      S LR L  L +L
Sbjct: 148 VLSRLTKLDTLSLEDN-QISDIV-PLAGLTKLQNLYLSKNHI------SDLRALAGLKNL 199

Query: 314 RGTLTIS--KLENAQLDGKKNLKVLM-LRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQ 370
              L +   +  N  ++ + NL V   ++ T+ +  +    ++        +K H     
Sbjct: 200 D-VLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFT 258

Query: 371 FFISGYGGTKFPIWLGDSSFSN 392
             +S        I    + F  
Sbjct: 259 NEVSFIFYQPVTIGKAKARFHG 280

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 38/166 (22%), Positives = 64/166 (38%), Gaps = 13/166 (7%)

Query: 183 SILPKLFK-LQRLRVFSLCGYWISELPDSI-GDLRYLRYLNLSGTQIRTLPESV-NKLYN 239
           +I    F  L  L    L    ++ +P+     L  L+ L L    I ++P    N++ +
Sbjct: 102 TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS 161

Query: 240 LHTLSLEGCRGLRKLCAGM-GNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLC---NF- 294
           L  L L   + L  +  G    L  L +LN +   +L E+P  +  L  L  L    N  
Sbjct: 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIP-NLTPLIKLDELDLSGNHL 219

Query: 295 -VVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLR 339
             +   S   L  L+ L  +  +  I  +E    D  ++L  + L 
Sbjct: 220 SAIRPGSFQGLMHLQKL-WMIQSQ-IQVIERNAFDNLQSLVEINLA 263

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 28/116 (24%), Positives = 44/116 (37%), Gaps = 10/116 (8%)

Query: 182 HSILPKLFK-LQRLRVFSLCGY-WISELPDSI-GDLRYLRYLNLSGTQIRTLPESVNKLY 238
            SI    F  +  LR   L     +S + +     L  LRYLNL+   +R +P ++  L 
Sbjct: 149 ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLI 207

Query: 239 NLHTLSLEGCRGLRKLCAGM-GNLIKLHHLN-NSNTDSLEEMPLG-IGKLTCLQTL 291
            L  L L G   L  +  G    L+ L  L    +   ++ +       L  L  +
Sbjct: 208 KLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQS--QIQVIERNAFDNLQSLVEI 260

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.0 bits (117), Expect = 4e-06
 Identities = 46/251 (18%), Positives = 84/251 (33%), Gaps = 43/251 (17%)

Query: 204 ISELPDSI-GDLRYLRYLNLSGTQIRTLPESV-NKLYNLHTLSLEGCR----------GL 251
           I+ + +S       L+ L L+   I T+ E   + L +L  L L               L
Sbjct: 64  ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPL 123

Query: 252 RKL---------------CAGMGNLIKLHHLNNSNTDSLEEMPLGI-GKLTCLQTL---- 291
             L                +   +L KL  L   N D+  ++       LT L+ L    
Sbjct: 124 SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183

Query: 292 CNFVVGKDSGSRLRELKLLTHLR-GTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLR 350
            +          L+ ++ ++HL         L    +D   +++ L LR T+     +  
Sbjct: 184 SDLQ--SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL---DTFH 238

Query: 351 EAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPS- 409
            +E   G  + L          I+     +    L     S L+ L+F    +  ++P  
Sbjct: 239 FSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ--ISGLLELEFSRNQL-KSVPDG 295

Query: 410 -VGQLPSLKHL 419
              +L SL+ +
Sbjct: 296 IFDRLTSLQKI 306

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 49.2 bits (118), Expect = 4e-06
 Identities = 31/125 (24%), Positives = 45/125 (36%), Gaps = 19/125 (15%)

Query: 183 SILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLY---- 238
             LP+L  L  L         +  LPD    L  L   +   T +  LP+S+  L     
Sbjct: 228 EELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSEN 287

Query: 239 ----------NLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCL 288
                     NL+ L+      +R LC    +L +L+  NN     L E+P    +L  L
Sbjct: 288 IFSGLSELPPNLYYLNASSNE-IRSLCDLPPSLEELNVSNN----KLIELPALPPRLERL 342

Query: 289 QTLCN 293
               N
Sbjct: 343 IASFN 347

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.5 bits (116), Expect = 6e-06
 Identities = 87/498 (17%), Positives = 150/498 (30%), Gaps = 108/498 (21%)

Query: 184 ILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQI-RTLPESVNKLYNLHT 242
           I P+      L+        ++E+P    +++       + ++  R  P    +   +  
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62

Query: 243 LSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGS 302
             L  C              + H L  +N   L  +P     L  L   CN         
Sbjct: 63  SRLRDCL-----------DRQAHELELNNL-GLSSLPELPPHLESLVASCN--------- 101

Query: 303 RLREL-KLLTHLRGTLTISKLENAQLDGK-KNLKVLMLRWTNSTDGSSLREAETQKGVLD 360
            L EL +L   L+ +L +       L      L+ L +                    L 
Sbjct: 102 SLTELPELPQSLK-SLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-------------LP 147

Query: 361 MLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHLA 420
            L+    L+   +      K P         +L  +   +  +   LP +  LP L  + 
Sbjct: 148 ELQNSSFLKIIDVDNNSLKKLP-----DLPPSLEFIAAGNNQL-EELPELQNLPFLTAIY 201

Query: 421 VRRMSRVRRLGSEFYGNDTPIPFPCLETLRF-ENLLEWEDWIPHGSTQGVEGFPKLRELE 479
               + +++L         P     LE++    N+LE            +     L  L 
Sbjct: 202 ADN-NSLKKL---------PDLPLSLESIVAGNNILE-----------ELPELQNLPFLT 240

Query: 480 VIGCS--KLKGTFPEHLPALEMLVIGGCEELLVSITSLPA----LSKLEIGGCKKVVWRS 533
            I      LK T P+  P+LE L +         +T LP     L+ L++          
Sbjct: 241 TIYADNNLLK-TLPDLPPSLEALNVRDN-----YLTDLPELPQSLTFLDVSENIFSGLSE 294

Query: 534 ETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISN---------IKNETYIWKRH 584
              +L   N+               L    P LEEL +SN               +    
Sbjct: 295 LPPNLYYLNASSNEIR--------SLCDLPPSLEELNVSNNKLIELPALPPRLERLIASF 346

Query: 585 NGFLQ---DISSLKRLTIGWCPTLQSLVAEEEKDQQ--------QLCELSCRLEYLLLND 633
           N   +      +LK+L + + P L+      E  +         ++ EL   L+ L +  
Sbjct: 347 NHLAEVPELPQNLKQLHVEYNP-LREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVET 405

Query: 634 CKGLVKLPQSLLSLSSLR 651
              L + P    S+  LR
Sbjct: 406 NP-LREFPDIPESVEDLR 422

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 47.3 bits (113), Expect = 2e-05
 Identities = 32/175 (18%), Positives = 58/175 (33%), Gaps = 28/175 (16%)

Query: 137 KNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQG-FLAH---SILPKLFKLQ 192
           K+         +++      +    +   + L  CL   +    L +   S LP+L    
Sbjct: 34  KSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL--PP 91

Query: 193 RLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLY-------------- 238
            L         ++ELP+    L+ L   N +   +  LP  +  L               
Sbjct: 92  HLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQN 151

Query: 239 --NLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTL 291
              L  + ++    L+KL     +L  +   NN     LEE+P  +  L  L  +
Sbjct: 152 SSFLKIIDVDNNS-LKKLPDLPPSLEFIAAGNN----QLEELP-ELQNLPFLTAI 200

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 20/118 (16%), Positives = 33/118 (27%), Gaps = 22/118 (18%)

Query: 191 LQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRG 250
              L   ++    + ELP     L  L     S   +  +PE      NL  L +E    
Sbjct: 316 PPSLEELNVSNNKLIELPALPPRLERL---IASFNHLAEVPEL---PQNLKQLHVEYNP- 368

Query: 251 LRKLCAGMGNLIKLHHLNNSNTDS---------------LEEMPLGIGKLTCLQTLCN 293
           LR+      ++  L   ++                    L E P     +  L+    
Sbjct: 369 LREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDLRMNSE 426

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.8 bits (114), Expect = 6e-06
 Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 7/113 (6%)

Query: 183 SILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESV-NKLYNLH 241
           + L     L  L    L    +  LP     L  L  L++S  ++ +LP      L  L 
Sbjct: 68  TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127

Query: 242 TLSLEGCRGLRKLCAGM-GNLIKLHHLN-NSNTDSLEEMPLGI-GKLTCLQTL 291
            L L+G   L+ L  G+     KL  L+  +N  +L E+P G+   L  L TL
Sbjct: 128 ELYLKGNE-LKTLPPGLLTPTPKLEKLSLANN--NLTELPAGLLNGLENLDTL 177

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.8 bits (117), Expect = 6e-06
 Identities = 60/345 (17%), Positives = 87/345 (25%), Gaps = 102/345 (29%)

Query: 204 ISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCR--GLRKLCAGMGNL 261
            S +  S+  L  L  L LS + I           +L +L L      G       +G+ 
Sbjct: 66  FSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSC 125

Query: 262 IKLHHLN-NSNTDSLEEMPLGIGKLTCLQTL----CNFVVGKDSGSRLRELKLLTHLRGT 316
             L  LN +SNT        G  KL  L+ L     +      SG+ +    L       
Sbjct: 126 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI-----SGANVVGWVLSDGC--- 177

Query: 317 LTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGY 376
                           LK L +                                  ISG 
Sbjct: 178 --------------GELKHLAISGNK------------------------------ISG- 192

Query: 377 GGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHLAVRRMSRVRRLGS-EFY 435
                 +    S   NL  L        T +P +G   +L+HL          +   +  
Sbjct: 193 ---DVDV----SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHL---------DISGNKLS 236

Query: 436 GNDTPIP-----FPCLETLRF-ENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGT 489
           G              L+ L    N       IP            L+ L +    K  G 
Sbjct: 237 G---DFSRAISTCTELKLLNISSNQFVGP--IP------PLPLKSLQYLSLAEN-KFTGE 284

Query: 490 FPE----HLPALEMLVIGGCE---ELLVSITSLPALSKLEIGGCK 527
            P+        L  L + G      +     S   L  L +    
Sbjct: 285 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.1 bits (105), Expect = 2e-04
 Identities = 28/183 (15%), Positives = 50/183 (27%), Gaps = 25/183 (13%)

Query: 172 LSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIR-TL 230
           LS+        ++   L  L  L    L    I+           L  L+LS   +   +
Sbjct: 57  LSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPV 116

Query: 231 PE--SVNKLYNLHTLSLEGCR----GLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGK 284
               S+     L  L++        G       + +L  L    NS + +     +    
Sbjct: 117 TTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDG 176

Query: 285 LTCLQTL----CNFVVGKDSGSRLRELKLL----THLRGTL-TISKLENAQLDGKKNLKV 335
              L+ L         G    SR   L+ L     +    +  +             L+ 
Sbjct: 177 CGELKHLAISGNKI-SGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDC--------SALQH 227

Query: 336 LML 338
           L +
Sbjct: 228 LDI 230

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.4 bits (103), Expect = 3e-04
 Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 12/116 (10%)

Query: 183 SILPKLFKLQRLRVFSLCGYWIS-ELPDSIGDLRYLRYLNLSGTQIR-TLPESVNKLYNL 240
           +I   L  L +LR   L    +  E+P  +  ++ L  L L    +   +P  ++   NL
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492

Query: 241 HTLSLEGCR--GLRKLCAGMGNLIKLHHL---NNSNTDSLEEMPLGIGKLTCLQTL 291
           + +SL   R  G  ++   +G L  L  L   NNS + ++   P  +G    L  L
Sbjct: 493 NWISLSNNRLTG--EIPKWIGRLENLAILKLSNNSFSGNI---PAELGDCRSLIWL 543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 17/142 (11%)

Query: 155 FEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELP-DSIGD 213
           F+ LY ++ L       +S+        ++ P       L   S+    ++ +P  ++  
Sbjct: 196 FKRLYRLKVLE------ISHWPY---LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH 246

Query: 214 LRYLRYLNLSGTQIRTLPESV-NKLYNLHTLSLEGCRGLRKLCAGM-GNLIKLHHLN-NS 270
           L YLR+LNLS   I T+  S+ ++L  L  + L G + L  +       L  L  LN + 
Sbjct: 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSG 305

Query: 271 NTDSLEEMPLGI-GKLTCLQTL 291
           N   L  +   +   +  L+TL
Sbjct: 306 N--QLTTLEESVFHSVGNLETL 325

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 40/174 (22%), Positives = 63/174 (36%), Gaps = 16/174 (9%)

Query: 183 SILPKLFK-LQRLRVFSLCGYWISELPDSI-GDLRYLRYLNLSGTQIRTLPESV-NKLYN 239
           ++    F     L    L    +S +      +L  LR L L   +++ +P  V   L N
Sbjct: 46  TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN 105

Query: 240 LHTLSLEGCRGLRKLCAGM-GNLIKLHHLN-NSNTDSLEEMPLGI-GKLTCLQTL----C 292
           L  L +   + +  L   M  +L  L  L    N   L  +       L  L+ L    C
Sbjct: 106 LTKLDISENK-IVILLDYMFQDLYNLKSLEVGDN--DLVYISHRAFSGLNSLEQLTLEKC 162

Query: 293 NF-VVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTD 345
           N   +  ++ S L  L +L  LR  L I+ + +        LKVL +      D
Sbjct: 163 NLTSIPTEALSHLHGLIVL-RLRH-LNINAIRDYSFKRLYRLKVLEISHWPYLD 214

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 21/144 (14%), Positives = 46/144 (31%), Gaps = 9/144 (6%)

Query: 210 SIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNN 269
           +   +  L Y+ L+   +  L   +   +N+  L++            +  L  L  L  
Sbjct: 39  TEAQMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIH-ATNY-NPISGLSNLERLRI 95

Query: 270 SNTDSLEEMPLGIGKLTCLQTL--CNFVVGKDSGSRLRELKLLTHL--RGTLTISKLENA 325
              D   +    +  LT L  L   +        +++  L  +  +       I+ +   
Sbjct: 96  MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP- 154

Query: 326 QLDGKKNLKVLMLRWTNSTDGSSL 349
            L     LK L +++    D   +
Sbjct: 155 -LKTLPELKSLNIQFDGVHDYRGI 177

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 42/166 (25%), Positives = 65/166 (39%), Gaps = 13/166 (7%)

Query: 183 SILPKLFK-LQRLRVFSLCGYWISELP-DSIGDLRYLRYLNLSGTQIRTLPESV-NKLYN 239
            I    F  L  L    L   W++ +P  +   L  LR L L    I ++P    N++ +
Sbjct: 113 QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPS 172

Query: 240 LHTLSLEGCRGLRKLCAGM-GNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLC---NF- 294
           L  L L   + L  +  G    L  L +LN     ++++MP     L  L+ L    N  
Sbjct: 173 LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPNLTP-LVGLEELEMSGNHF 230

Query: 295 -VVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLR 339
             +   S   L  LK L  +  +  +S +E    DG  +L  L L 
Sbjct: 231 PEIRPGSFHGLSSLKKL-WVMNSQ-VSLIERNAFDGLASLVELNLA 274

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 29/142 (20%), Positives = 48/142 (33%), Gaps = 18/142 (12%)

Query: 155 FEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGY-WISELPDSI-G 212
           FE L  ++ L       L N+    +      ++  L RL    L     +  + +    
Sbjct: 143 FEYLSKLRELW------LRNNPIESIPSYAFNRVPSLMRLD---LGELKKLEYISEGAFE 193

Query: 213 DLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGM-GNLIKLHHLN-NS 270
            L  L+YLNL    I+ +P     L  L  L + G     ++  G    L  L  L   +
Sbjct: 194 GLFNLKYLNLGMCNIKDMPNLTP-LVGLEELEMSGNH-FPEIRPGSFHGLSSLKKLWVMN 251

Query: 271 NTDSLEEMPLG-IGKLTCLQTL 291
           +   +  +       L  L  L
Sbjct: 252 S--QVSLIERNAFDGLASLVEL 271

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 41/196 (20%), Positives = 76/196 (38%), Gaps = 30/196 (15%)

Query: 185 LPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLS 244
                +L  +         I  +   I  L  +  L L+G ++  + + +  L NL  L 
Sbjct: 39  AVTQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDI-KPLANLKNLGWLF 96

Query: 245 LEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRL 304
           L+  + ++ L   + +L KL  L+  +   + ++  G+  L  L++L    +G +  + +
Sbjct: 97  LDENK-VKDLS-SLKDLKKLKSLSLEHN-GISDIN-GLVHLPQLESLY---LGNNKITDI 149

Query: 305 RELKLLTHLRGTLT-----ISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVL 359
             L  LT L  TL+     IS +    L G   L+ L L   + +D             L
Sbjct: 150 TVLSRLTKLD-TLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-------------L 193

Query: 360 DMLKPHKNLEQFFISG 375
             L   KNL+   +  
Sbjct: 194 RALAGLKNLDVLELFS 209

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.0 bits (114), Expect = 1e-05
 Identities = 20/136 (14%), Positives = 48/136 (35%), Gaps = 16/136 (11%)

Query: 155 FEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDL 214
             +   +  +       LS +    + +    K+ +L+RL    +    +  L      +
Sbjct: 250 LLNYPGLVEVD------LSYNELEKIMYHPFVKMQRLERLY---ISNNRLVALNLYGQPI 300

Query: 215 RYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHL----NNS 270
             L+ L+LS   +  +  +  +   L  L L+    +  L   +     L +L    N+ 
Sbjct: 301 PTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTL--KLSTHHTLKNLTLSHNDW 357

Query: 271 NTDSLEEMPLGIGKLT 286
           + +SL  +   + +  
Sbjct: 358 DCNSLRALFRNVARPA 373

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 35/156 (22%), Positives = 55/156 (35%), Gaps = 17/156 (10%)

Query: 141 HLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLC 200
           H+               L N + +         NS+   L  ++L    +++ L    L 
Sbjct: 33  HIDMQTQDVYFGFEDITLNNQKIVT------FKNSTMRKLPAALLDSFRQVELLN---LN 83

Query: 201 GYWISELPDSI-GDLRYLRYLNLSGTQIRTLPESV-NKLYNLHTLSLEGCRGLRKLCAGM 258
              I E+          ++ L +    IR LP  V   +  L  L LE    L  L  G+
Sbjct: 84  DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGI 142

Query: 259 -GNLIKLHHLN-NSNTDSLEEMPLGI-GKLTCLQTL 291
             N  KL  L+ ++N  +LE +        T LQ L
Sbjct: 143 FHNTPKLTTLSMSNN--NLERIEDDTFQATTSLQNL 176

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 6/103 (5%)

Query: 191 LQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESV-NKLYNLHTLSLEGCR 249
              L +  L    +++    + +   L  ++LS  ++  +      K+  L  L +   R
Sbjct: 231 NVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 289

Query: 250 GLRKLCAGMGNLIKLHHLN-NSNTDSLEEMPLGIGKLTCLQTL 291
            L  L      +  L  L+ + N   L  +     +   L+ L
Sbjct: 290 -LVALNLYGQPIPTLKVLDLSHN--HLLHVERNQPQFDRLENL 329

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.3 bits (113), Expect = 2e-05
 Identities = 21/137 (15%), Positives = 41/137 (29%), Gaps = 6/137 (4%)

Query: 155 FEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDL 214
            ++L  +   R  L       +      SI+  L  +             S+       L
Sbjct: 225 LQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCL 284

Query: 215 RYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDS 274
             +  ++L+G  I+ L +     +   +LS+  C+  +     +  L  L    N  +  
Sbjct: 285 ANVSAMSLAGVSIKYLEDVPK-HFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSI- 342

Query: 275 LEEMPLGIGKLTCLQTL 291
                     L  L  L
Sbjct: 343 ----SFKKVALPSLSYL 355

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.0 bits (107), Expect = 9e-05
 Identities = 83/522 (15%), Positives = 149/522 (28%), Gaps = 108/522 (20%)

Query: 183 SILPKLFK-LQRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTLPESV-NKLYN 239
            +    F     L+   L    I  +   +   L +L  L L+G  I++      + L +
Sbjct: 46  ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS 105

Query: 240 LHTLSLEGCRGLRKLCAGM-GNLIKLHHLN-NSNTDSLEEMPLG--IGKLTCLQTL---- 291
           L  L     + L  L +   G LI L  LN   N   +    L      LT L  +    
Sbjct: 106 LENLVAVETK-LASLESFPIGQLITLKKLNVAHN--FIHSCKLPAYFSNLTNLVHVDLSY 162

Query: 292 --------CNFVVGKDSGSRLRELKL-----------------LTHL--RGTLTISKLEN 324
                    +    +++      L +                 L  L  RG    S +  
Sbjct: 163 NYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMK 222

Query: 325 AQLDGKKNLKVLMLRWTNSTDGSSLR--EAETQKGVLDMLKPHKNLEQFFISGYGGTKFP 382
             L     L V  L      D  +L   E    +G+ D+      L           KF 
Sbjct: 223 TCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKF- 281

Query: 383 IWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIP 442
                   +N+  +      +   L  V +    + L++ R                  P
Sbjct: 282 -----HCLANVSAMSLAGVSI-KYLEDVPKHFKWQSLSIIRC------------QLKQFP 323

Query: 443 FPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCS---KLKGTFPE-HLPALE 498
              L  L+   L   +  I           P L  L++   +       ++ +    +L 
Sbjct: 324 TLDLPFLKSLTLTMNKGSISFKKV----ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLR 379

Query: 499 MLVIGGCEELLVS--ITSLPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLA 556
            L +     +++S     L  L  L+                           L +V   
Sbjct: 380 HLDLSFNGAIIMSANFMGLEELQHLDFQHST----------------------LKRVTEF 417

Query: 557 GPLKPRLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQ 616
                 L KL  L+IS     T      +G    ++SL  L +       + ++      
Sbjct: 418 SAFLS-LEKLLYLDISY----TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV---- 468

Query: 617 QQLCELSCRLEYLLLNDCKGLVKLPQSLLS-LSSLREIEIYN 657
                 +  L +L L+ C+ L ++   +   L  L+ + + +
Sbjct: 469 --FANTT-NLTFLDLSKCQ-LEQISWGVFDTLHRLQLLNMSH 506

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 93/652 (14%), Positives = 190/652 (29%), Gaps = 111/652 (17%)

Query: 182 HSILPKLFK-LQRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTLPESV-NKLY 238
             +    F    +L    +    IS+L P+    L  L+ LNL   ++  L +       
Sbjct: 38  RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT 97

Query: 239 NLHTLSLEGCRGLRKLCAGM-GNLIKLHHLN-NSNTDSLEEMPLG-IGKLTCLQTL---- 291
           NL  L L     ++K+          L  L+ + N   L    LG   +L  LQ L    
Sbjct: 98  NLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHN--GLSSTKLGTQVQLENLQELLLSN 154

Query: 292 CNFVVGKDSGSRLRELKLLTHLRGTLT---ISKLENAQLDGKKNLKVLMLRWTNSTDGSS 348
                 K     +     L  L   L+   I +           L  L L        S 
Sbjct: 155 NKIQALKSEELDIFANSSLKKLE--LSSNQIKEFSPGCFHAIGRLFGLFLNN-VQLGPSL 211

Query: 349 LREAETQKGVLDMLKPHKNLEQFFISGYGGTKF-PIWLGDSSFSNLVTLKFEDCGMCTTL 407
             +       L +   + ++    +S    +           ++NL  L      +    
Sbjct: 212 TEK-------LCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264

Query: 408 PSV-GQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGST 466
                 LP L++  +   +         +G         +  L  +     +  I   S 
Sbjct: 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHG------LFNVRYLNLKRSFTKQS-ISLASL 317

Query: 467 QGVE-----GFPKLRELEVIGC--SKLKGTFPEHLPALEMLVIGGCEELLVSITSLPALS 519
             ++         L  L +       +K      L  L+ L +      L ++T+     
Sbjct: 318 PKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNE-TFV 376

Query: 520 KLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETY 579
            L       +       +L ++N +     +     +      L  LE L++   +    
Sbjct: 377 SLAHSPLHIL-------NL-TKNKI---SKIESDAFSW-----LGHLEVLDLGLNEIGQE 420

Query: 580 IWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLL--NDCKGL 637
           +        + + ++  + + +      L       +     +   L+ L+L     K +
Sbjct: 421 L---TGQEWRGLENIFEIYLSYNK-YLQL------TRNSFALVP-SLQRLMLRRVALKNV 469

Query: 638 VKLPQSLLSLSSLREIEIYNCSSFVSFPEVALPS-------KVRSISIHRCDALKSLPEA 690
              P     L +L  +++ N  +  +  +  L          ++  ++ R     +    
Sbjct: 470 DSSPSPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP 528

Query: 691 WMCDANLS-LEILTISRCHSLTYIAEVQLPPSLKNVVIRNCDNVRTLTVE----EGIQSS 745
                 LS L IL +        I     P      V ++   ++ + +       + +S
Sbjct: 529 IYFLKGLSHLHILNLESNG-FDEI-----PVE----VFKDLFELKIIDLGLNNLNTLPAS 578

Query: 746 SSRRYTSSLLEHLHIESCPSLTCIFSKNELLATLESLEVGNLPPSLKSLEVL 797
                 S  L+ L++           KN     + S+E     P+ ++L  L
Sbjct: 579 VFNNQVS--LKSLNL----------QKNL----ITSVEKKVFGPAFRNLTEL 614

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.9 bits (112), Expect = 3e-05
 Identities = 30/146 (20%), Positives = 47/146 (32%), Gaps = 15/146 (10%)

Query: 155 FEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDL 214
           +  L NI  +       LS +    L  +    +  LQRL +  +    +   P     L
Sbjct: 426 WRGLENIFEIY------LSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 479

Query: 215 RYLRYLNLSGTQIRTLPESV-NKLYNLHTLSLEGCR--------GLRKLCAGMGNLIKLH 265
           R L  L+LS   I  + + +   L  L  L L+                   +  L  LH
Sbjct: 480 RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH 539

Query: 266 HLNNSNTDSLEEMPLGIGKLTCLQTL 291
            LN  +    E        L  L+ +
Sbjct: 540 ILNLESNGFDEIPVEVFKDLFELKII 565

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.9 bits (99), Expect = 8e-04
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 2/76 (2%)

Query: 172 LSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTL 230
           L+   +       +  L  L  L + +L      E+  +   DL  L+ ++L    + TL
Sbjct: 516 LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTL 575

Query: 231 PESV-NKLYNLHTLSL 245
           P SV N   +L +L+L
Sbjct: 576 PASVFNNQVSLKSLNL 591

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 20/136 (14%), Positives = 48/136 (35%), Gaps = 16/136 (11%)

Query: 155 FEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDL 214
             +   +  +       LS +    + +    K+ +L+RL    +    +  L      +
Sbjct: 244 LLNYPGLVEVD------LSYNELEKIMYHPFVKMQRLERLY---ISNNRLVALNLYGQPI 294

Query: 215 RYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHL----NNS 270
             L+ L+LS   +  +  +  +   L  L L+    +  L   +     L +L    N+ 
Sbjct: 295 PTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTL--KLSTHHTLKNLTLSHNDW 351

Query: 271 NTDSLEEMPLGIGKLT 286
           + +SL  +   + +  
Sbjct: 352 DCNSLRALFRNVARPA 367

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 45/283 (15%), Positives = 81/283 (28%), Gaps = 60/283 (21%)

Query: 141 HLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLC 200
           H+               L N + +         NS+   L  ++L    +++ L    L 
Sbjct: 27  HIDMQTQDVYFGFEDITLNNQKIVT------FKNSTMRKLPAALLDSFRQVELLN---LN 77

Query: 201 GYWISELPDSI-GDLRYLRYLNLSGTQIRTLPESV-NKLYNLHTLSLEGCRGLRKLCAGM 258
              I E+          ++ L +    IR LP  V   +  L  L LE    L  L  G+
Sbjct: 78  DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGI 136

Query: 259 -GNLIKLHHLN-NSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGT 316
             N  KL  L+ ++N             L          +  D+      L+ L  L   
Sbjct: 137 FHNTPKLTTLSMSNN------------NLE--------RIEDDTFQATTSLQNL-QLSSN 175

Query: 317 LTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGY 376
             ++ ++ + +    +L    + +                  L  L     +E+   S  
Sbjct: 176 R-LTHVDLSLI---PSLFHANVSYNL----------------LSTLAIPIAVEELDASHN 215

Query: 377 GGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHL 419
                           L  LK +   + T    +   P L  +
Sbjct: 216 SINVVR----GPVNVELTILKLQHNNL-TDTAWLLNYPGLVEV 253

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 46.2 bits (110), Expect = 4e-05
 Identities = 62/348 (17%), Positives = 108/348 (31%), Gaps = 68/348 (19%)

Query: 190 KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCR 249
           +L  L         I+++   I  L  L  L  +   I TL   +++  NL  L+ +  +
Sbjct: 40  QLATLTSLDCHNSSITDMTG-IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK 96

Query: 250 GLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKL 309
            L  L   +  L KL +LN      L ++   + +   L  L        + + L E+ +
Sbjct: 97  -LTNL--DVTPLTKLTYLNCDTN-KLTKLD--VSQNPLLTYLNC------ARNTLTEIDV 144

Query: 310 --LTHLRGTLTIS---KLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKP 364
              T L   L      K+    +  +  L  L   +   T+             LD +  
Sbjct: 145 SHNTQLT-ELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-------------LD-VSQ 189

Query: 365 HKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHLAVRRM 424
           +K L +        TK  +    +    L  L      + T +  V  L  L +      
Sbjct: 190 NKLLNRLNCDTNNITKLDL----NQNIQLTFLDCSSNKL-TEID-VTPLTQLTYFDCS-- 241

Query: 425 SRVRRLGSEFYGNDTPIP---FPCLETLRFEN--LLEWEDWIPHGSTQGVEGFPKLRELE 479
                         T +       L TL      LLE +          +    +L   +
Sbjct: 242 ----------VNPLTELDVSTLSKLTTLHCIQTDLLEID----------LTHNTQLIYFQ 281

Query: 480 VIGCSKLKGTFPEHLPALEMLVIGGCEELLVSITSLPALSKLEIGGCK 527
             GC K+K     H   L +L         + ++  P L  L +   +
Sbjct: 282 AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE 329

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 7/92 (7%)

Query: 204 ISELPDSIGD-LRYLRYLNLSGTQIRTLPESV-NKLYNLHTLSLEGCRGLRKLCAGM-GN 260
           I++L   + D L  L+ L L   Q+  LP  V + L  L  L L   + L  L + +   
Sbjct: 52  ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDR 110

Query: 261 LIKLHHLN-NSNTDSLEEMPLGIGKLTCLQTL 291
           L+ L  L    N   L E+P GI +LT L  L
Sbjct: 111 LVHLKELFMCCN--KLTELPRGIERLTHLTHL 140

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 8/93 (8%)

Query: 204 ISELPDSIGD-LRYLRYLNLSGTQIRTLPESV-NKLYNLHTLSLEGCRGLRKLCAGM-GN 260
           +S LP      L  LR L L+  +++TLP  +  +L NL TL +   + L+ L  G+   
Sbjct: 49  LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQ 107

Query: 261 LIKLHHLN-NSNTDSLEEMPLGI-GKLTCLQTL 291
           L+ L  L  + N   L+ +P  +   LT L  L
Sbjct: 108 LVNLAELRLDRN--QLKSLPPRVFDSLTKLTYL 138

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 45.2 bits (107), Expect = 6e-05
 Identities = 42/241 (17%), Positives = 76/241 (31%), Gaps = 35/241 (14%)

Query: 204 ISELPDSIGDLRYLRYLNLSGTQIRTLPESV-NKLYNLHTLSLEGCRGLRKLCAGM-GNL 261
           ++E+P  +   R    L    T++R + +   +   +L  + +     L  + A +  NL
Sbjct: 21  VTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL 78

Query: 262 IKLHHLNNSNTDSLEEMPLGI-GKLTCLQTL--CN---FVVGKDSGSRLRELKLLTHLRG 315
            KLH +     ++L  +       L  LQ L   N     +         +  LL  ++ 
Sbjct: 79  PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL-DIQD 137

Query: 316 TLTISKLENAQLDG-KKNLKVLMLRW-------TNSTDGSSLRE---------AETQKGV 358
            + I  +E     G      +L L          ++ +G+ L E          E    V
Sbjct: 138 NINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDV 197

Query: 359 LDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKH 418
                         IS       P         NL  L+         LP++ +L +L  
Sbjct: 198 FHGA---SGPVILDISRTRIHSLP----SYGLENLKKLRARSTYNLKKLPTLEKLVALME 250

Query: 419 L 419
            
Sbjct: 251 A 251

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.0 bits (107), Expect = 8e-05
 Identities = 28/114 (24%), Positives = 43/114 (37%), Gaps = 6/114 (5%)

Query: 183 SILPKLFK-LQRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTLPESV-NKLYN 239
            +    F     L+V  L    I  +   +   L +L  L L+G  I++L     + L +
Sbjct: 42  HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101

Query: 240 LHTLSLEGCRGLRKL-CAGMGNLIKLHHLN-NSNTDSLEEMPLGIGKLTCLQTL 291
           L  L       L  L    +G+L  L  LN   N     ++P     LT L+ L
Sbjct: 102 LQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 42.3 bits (100), Expect = 6e-04
 Identities = 35/216 (16%), Positives = 58/216 (26%), Gaps = 40/216 (18%)

Query: 160 NIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCG---YWISELPDSIGDLRY 216
                 T     L   +              L  L    L      +      S      
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 217 LRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCR-----------GLRKL----------- 254
           L+YL+LS   + T+  +   L  L  L  +               LR L           
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 255 ------CAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTL----CNFV-VGKDSGSR 303
                   G+ +L  L    NS  ++    P    +L  L  L    C    +   + + 
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFL--PDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492

Query: 304 LRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLR 339
           L  L++L ++        L+        +L+VL   
Sbjct: 493 LSSLQVL-NMSHNN-FFSLDTFPYKCLNSLQVLDYS 526

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 79/473 (16%), Positives = 150/473 (31%), Gaps = 71/473 (15%)

Query: 204 ISELPDS-IGDLRYLRYLNLSGTQIRTLPESV-NKLYNLHTLSLEGCRGLRKL-CAGMGN 260
           ISEL  S I  L  LR L +S  +I+ L  SV      L  L L   + L K+ C    N
Sbjct: 33  ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-LVKISCHPTVN 91

Query: 261 LIKLHHLNNSNTDSLEEMPLG--IGKLTCLQTLCNFVVGKDSGSRLRELKL--LTHLRGT 316
           L  L    N    + + +P+    G ++ L+ L        S + L +  +  + HL  +
Sbjct: 92  LKHLDLSFN----AFDALPICKEFGNMSQLKFLGL------STTHLEKSSVLPIAHLNIS 141

Query: 317 LTISKLENA-----QLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQF 371
             +  L          +G ++     L     T+       +     +  L+   N++  
Sbjct: 142 KVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE-LSNIKCV 200

Query: 372 FISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMC-TTLPSVGQLPSLKHLAVRRMSRVRRL 430
                      I     +   L  L   +      +   + QL     +    +S V +L
Sbjct: 201 LEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV-KL 259

Query: 431 GSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEV--IGCSKLKG 488
             +    D       L+ L    ++      P         +     + +     S  + 
Sbjct: 260 QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI-----YEIFSNMNIKNFTVSGTRM 314

Query: 489 T---FPEHLPALEMLVIGGCEELLVSITSLPALSKLEIGGCKKVVWRSETDHLG-SQNSV 544
                P  +     L           +T            C  +    E + L    N  
Sbjct: 315 VHMLCPSKISPFLHLDFSNN-----LLTDTVF------ENCGHLT---ELETLILQMNQ- 359

Query: 545 VCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPT 604
                L ++     +  ++  L++L+IS   + +Y      G      SL  L +     
Sbjct: 360 -----LKELSKIAEMTTQMKSLQQLDISQ-NSVSYD--EKKGDCSWTKSLLSLNMSSN-I 410

Query: 605 LQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSLLSLSSLREIEIYN 657
           L   +            L  R++ L L+  K +  +P+ ++ L +L+E+ + +
Sbjct: 411 LTDTIFR---------CLPPRIKVLDLHSNK-IKSIPKQVVKLEALQELNVAS 453

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 45/244 (18%), Positives = 79/244 (32%), Gaps = 41/244 (16%)

Query: 137 KNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRV 196
            N   ++             DL  I  L          +       + +  +  L  L  
Sbjct: 19  ANAIKIAAGKSNVTDTVTQADLDGITTL------SAFGTGV-----TTIEGVQYLNNLIG 67

Query: 197 FSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCA 256
             L    I++L   + +L  +  L LSG  ++ +  ++  L ++ TL L   + +  +  
Sbjct: 68  LELKDNQITDLA-PLKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQ-ITDVT- 123

Query: 257 GMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGT 316
            +  L  L  L       +  +   +  LT LQ L    +G    S L  L  L+ L  T
Sbjct: 124 PLAGLSNLQVLYLDLN-QITNIS-PLAGLTNLQYLS---IGNAQVSDLTPLANLSKLT-T 177

Query: 317 LT-----ISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQF 371
           L      IS +    L    NL  + L+    +D             +  L    NL   
Sbjct: 178 LKADDNKISDISP--LASLPNLIEVHLKNNQISD-------------VSPLANTSNLFIV 222

Query: 372 FISG 375
            ++ 
Sbjct: 223 TLTN 226

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 15/124 (12%), Positives = 41/124 (33%), Gaps = 12/124 (9%)

Query: 418 HLAVRRMSRVRRLG-SEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLR 476
              +R  + VR  G   +  +   +P   L+  + + +   +  I       +EG   + 
Sbjct: 29  EWLLRCGAMVRYHGQQRWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVE 88

Query: 477 ELEVIGCSKLK-------GTFPEHLPALEMLVIGGCEEL----LVSITSLPALSKLEIGG 525
           ++ +  C  ++               ++  + I  C  +    ++++     L  L +  
Sbjct: 89  KIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSD 148

Query: 526 CKKV 529
              V
Sbjct: 149 LPGV 152

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 40.2 bits (94), Expect = 8e-04
 Identities = 19/139 (13%), Positives = 43/139 (30%), Gaps = 25/139 (17%)

Query: 207 LPDSIGDLRYLRYLNLSGTQIR-TLPESVNKLYNLHTLSLEGCR-----GLRKLCAGMGN 260
           LP    D   ++ ++ + + I     + +  L  +  + L  C       L +L      
Sbjct: 53  LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENL 112

Query: 261 LIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTIS 320
              +  +   +  ++ +          +  L +F         L+ L     L     + 
Sbjct: 113 QKSMLEMEIISCGNVTD--------KGIIALHHF-------RNLKYL----FLSDLPGVK 153

Query: 321 KLENAQLDGKKNLKVLMLR 339
           + E      K +L  L L+
Sbjct: 154 EKEKIVQAFKTSLPSLELK 172

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 27/196 (13%), Positives = 59/196 (30%), Gaps = 42/196 (21%)

Query: 183 SILPKLFK-LQRLRVFSLCGYWISEL---PDSIGDLRYLRYLNLSGTQIRTLPESV---- 234
            +   +F  L ++ V  L    +        +   ++ L Y+ ++ T I T+P+ +    
Sbjct: 135 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSL 194

Query: 235 ------------------NKLYNLHTLSLEGCRGLRKLCAGM-GNLIKLHHLNNSNTDSL 275
                               L NL  L L     +  +  G   N   L  L+ +N   L
Sbjct: 195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNN-KL 252

Query: 276 EEMPLGIGKLTCLQTL-----------CNFVVGKDSGSRLRELKLLTHLRGT-LTISKLE 323
            ++P G+     +Q +            N        ++      +  L    +   +++
Sbjct: 253 VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGV-SLFSNPVQYWEIQ 311

Query: 324 NAQLDGKKNLKVLMLR 339
            +          + L 
Sbjct: 312 PSTFRCVYVRAAVQLG 327

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 33/142 (23%), Positives = 49/142 (34%), Gaps = 17/142 (11%)

Query: 195 RVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKL 254
            V   C     ++     +   L +L+L    + ++  ++ KL  L  L L   R    L
Sbjct: 29  LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGL 87

Query: 255 CAGMGNLIKLHHLNNSNT--DSLEEMPLGIGKLTCLQTLCNFV--VGKDSGSRLRELKLL 310
                 L  L HLN S      +  +   + KL CL++L  F   V   +  R    KLL
Sbjct: 88  DMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL 146

Query: 311 THLRGTLTISKLENAQLDGKKN 332
             L             LDG   
Sbjct: 147 PQLT-----------YLDGYDR 157

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 42.5 bits (101), Expect = 4e-04
 Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 6/94 (6%)

Query: 203 WISELPDSIGDLRYLRYLNLSGTQIR---TLPESVNKLYNLHTLSLEGCRGLR-KLCAGM 258
           W+  L D+      +  L+LSG  +     +P S+  L  L+ L + G   L   +   +
Sbjct: 38  WLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI 97

Query: 259 GNLIKLHHLNNSNTDSLE-EMPLGIGKLTCLQTL 291
             L +LH+L  ++T ++   +P  + ++  L TL
Sbjct: 98  AKLTQLHYLYITHT-NVSGAIPDFLSQIKTLVTL 130

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 42.1 bits (100), Expect = 4e-04
 Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 13/116 (11%)

Query: 183 SILPKLFKLQRLRVFSLCGY-WIS-ELPDSIGDLRYLRYLNLSGTQIR-TLPESVNKLYN 239
            I   L  L  L    + G   +   +P +I  L  L YL ++ T +   +P+ ++++  
Sbjct: 67  PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126

Query: 240 LHTLSLEGCR--GLRKLCAGMGNLIKLHHL---NNSNTDSLEEMPLGIGKLTCLQT 290
           L TL        G   L   + +L  L  +    N  + ++   P   G  + L T
Sbjct: 127 LVTLDFSYNALSG--TLPPSISSLPNLVGITFDGNRISGAI---PDSYGSFSKLFT 177

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 8/93 (8%)

Query: 204 ISELPDSIGD-LRYLRYLNLSGTQIRTLPESV-NKLYNLHTLSLEGCRGLRKLCAGM-GN 260
           I  +P       + LR ++LS  QI  L       L +L++L L G + + +L   +   
Sbjct: 44  IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLFEG 102

Query: 261 LIKLHHLN-NSNTDSLEEMPLGI-GKLTCLQTL 291
           L  L  L  N+N   +  + +     L  L  L
Sbjct: 103 LFSLQLLLLNAN--KINCLRVDAFQDLHNLNLL 133

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 37/168 (22%), Positives = 64/168 (38%), Gaps = 11/168 (6%)

Query: 180 LAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYN 239
           L H +  KL +L +L + S    +      S      L+YL+LS   + T+  +   L  
Sbjct: 43  LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ 102

Query: 240 LHTLSLEGCRGLRKLCAGM-GNLIKLHHLNNSNTDSLEEMPLGI-GKLTCLQTL----CN 293
           L  L  +     +     +  +L  L +L+ S+T        GI   L+ L+ L     +
Sbjct: 103 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNS 161

Query: 294 FVVGKDSG--SRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLR 339
           F         + LR L  L  L     + +L     +   +L+VL + 
Sbjct: 162 FQENFLPDIFTELRNLTFL-DLSQCQ-LEQLSPTAFNSLSSLQVLNMS 207

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 33/150 (22%), Positives = 49/150 (32%), Gaps = 17/150 (11%)

Query: 186 PKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSL 245
            +     R R   L GY I  + +    L     ++ S  +IR L +    L  L TL +
Sbjct: 13  AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLV 71

Query: 246 EGCRGLRKLCAGMGNLIKLHHLNNSN--TDSLEEMPLGIGKLTCLQTLCNF--VVGKDSG 301
              R  R        L  L  L  +N     L ++   +  L  L  LC     V     
Sbjct: 72  NNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCILRNPVTNKKH 130

Query: 302 SRLRELKLLTHLRGTLTISKLENAQLDGKK 331
            RL  +  +  +R            LD +K
Sbjct: 131 YRLYVIYKVPQVR-----------VLDFQK 149

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.1 bits (97), Expect = 8e-04
 Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 7/93 (7%)

Query: 204 ISELP-DSIGDLRYLRYLNLSGTQIRTLPESV-NKLYNLHTLSLEGCRGLRKLCAGM-GN 260
           IS +P  S    R L  L L    +  +  +    L  L  L L     LR +       
Sbjct: 44  ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG 103

Query: 261 LIKLHHLN-NSNTDSLEEMPLGI-GKLTCLQTL 291
           L +LH L+ +     L+E+  G+   L  LQ L
Sbjct: 104 LGRLHTLHLDRC--GLQELGPGLFRGLAALQYL 134

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.1 bits (97), Expect = 8e-04
 Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 8/93 (8%)

Query: 204 ISEL-PDSIGDLRYLRYLNLSGTQIRTLPESV-NKLYNLHTLSLEGCRGLRKLCAGM-GN 260
           +  L   S      L+ L+LS  +I+T+ +     L +L TL L G   ++ L  G    
Sbjct: 40  LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSG 98

Query: 261 LIKLHHLNNSNTD--SLEEMPLGIGKLTCLQTL 291
           L  L  L    T+  SLE  P  IG L  L+ L
Sbjct: 99  LSSLQKLVAVETNLASLENFP--IGHLKTLKEL 129

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	831
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.98
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.98
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.97
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.97
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.97
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.97
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.97
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.96
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.96
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.96
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.96
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.96
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.94
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.94
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.94
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.94
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.93
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.93
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.91
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.91
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.91
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.9
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.9
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.89
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.89
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.89
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.87
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.87
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.86
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.85
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.84
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.84
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.84
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.83
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.82
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.82
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.81
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.81
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.78
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.78
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.77
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.77
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.77
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.76
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.76
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.75
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.75
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.75
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.74
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.74
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.74
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.72
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.72
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.71
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.71
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.7
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.7
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.68
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.68
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.67
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.67
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.67
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.67
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.66
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.64
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.64
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.64
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.62
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.61
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.6
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.6
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.6
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.6
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.57
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.56
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.51
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.5
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.5
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.5
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.49
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.49
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.46
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.44
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.44
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.43
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.43
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.42
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.41
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.41
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.41
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.4
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.4
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.38
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.38
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.37
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.35
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.35
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.34
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.33
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.33
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.29
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.29
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.28
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.28
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.28
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.25
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.24
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.23
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.22
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.21
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.2
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.18
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.15
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.15
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	99.06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.03
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.01
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.0
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.97
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.97
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.95
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.94
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.94
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.92
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.89
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.81
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.7
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	98.66
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.66
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.62
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.6
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.54
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.44
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.34
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.25
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.21
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.02
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.97
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.93
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.89
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.85
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.81
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.7
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.52
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.48
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.21
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.2
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.28
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	93.32
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	93.28
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	91.12

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.8e-43  Score=411.86  Aligned_cols=562  Identities=16%  Similarity=0.069  Sum_probs=302.0

Q ss_pred             ccccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCC-ccch--hhhccCCccEEeecCcCccccccccc-c
Q 038658          184 ILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIR-TLPE--SVNKLYNLHTLSLEGCRGLRKLCAGM-G  259 (831)
Q Consensus       184 ~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~-~lp~--~i~~L~~L~~L~l~~~~~~~~lp~~i-~  259 (831)
                      +++.+..++.|++++++.+.+..+|..|+++++|++|+|++|.+. .+|.  .++++++|++|++++|.....+|..+ +
T Consensus        69 l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  148 (768)
T 3rgz_A           69 VSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL  148 (768)
T ss_dssp             HHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCC
T ss_pred             cChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhc
Confidence            444444555555555555555445555555555555555555554 3444  55555555555555554444444433 4


Q ss_pred             CcccccccccCCCCCcccccCC---CCCccccccccceEecCCCCCcchhhhcccccc-CeeeEcccccccccCCCCcce
Q 038658          260 NLIKLHHLNNSNTDSLEEMPLG---IGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLR-GTLTISKLENAQLDGKKNLKV  335 (831)
Q Consensus       260 ~L~~L~~L~l~~~~~~~~~p~~---~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~-~~l~i~~l~~~~l~~~~~L~~  335 (831)
                      ++++|++|++++|.+.+..|..   ++++++|++|...............+.+|+.|. ....+...... +..+++|++
T Consensus       149 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~  227 (768)
T 3rgz_A          149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQH  227 (768)
T ss_dssp             CCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCE
T ss_pred             cCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCE
Confidence            5555555555555533333333   445555555421111100001111222222111 01111111112 556666666


Q ss_pred             EEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCC-CCccCCCCCCCceeEEEEecCCCCCCCC-CCCC-
Q 038658          336 LMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTK-FPIWLGDSSFSNLVTLKFEDCGMCTTLP-SVGQ-  412 (831)
Q Consensus       336 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~p~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~-  412 (831)
                      |++++|.....           .+..+..+++|+.|++++|.... +|..    .+++|++|++++|.+.+.+| .+.. 
T Consensus       228 L~Ls~n~l~~~-----------~~~~l~~l~~L~~L~Ls~n~l~~~~~~~----~l~~L~~L~L~~n~l~~~ip~~~~~~  292 (768)
T 3rgz_A          228 LDISGNKLSGD-----------FSRAISTCTELKLLNISSNQFVGPIPPL----PLKSLQYLSLAENKFTGEIPDFLSGA  292 (768)
T ss_dssp             EECCSSCCCSC-----------HHHHTTTCSSCCEEECCSSCCEESCCCC----CCTTCCEEECCSSEEEESCCCCSCTT
T ss_pred             EECcCCcCCCc-----------ccHHHhcCCCCCEEECCCCcccCccCcc----ccCCCCEEECcCCccCCccCHHHHhh
Confidence            66666554322           33345566666666666665542 2322    25666666666666665555 3433 


Q ss_pred             CCCcceEEeccccCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCCC
Q 038658          413 LPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPE  492 (831)
Q Consensus       413 l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~  492 (831)
                      +++|++|++++|.....++..+.      .+++|+.|++.++.-... +...   .+..+++|++|++++| .+++.+|.
T Consensus       293 ~~~L~~L~Ls~n~l~~~~p~~~~------~l~~L~~L~L~~n~l~~~-ip~~---~l~~l~~L~~L~Ls~n-~l~~~~p~  361 (768)
T 3rgz_A          293 CDTLTGLDLSGNHFYGAVPPFFG------SCSLLESLALSSNNFSGE-LPMD---TLLKMRGLKVLDLSFN-EFSGELPE  361 (768)
T ss_dssp             CTTCSEEECCSSEEEECCCGGGG------GCTTCCEEECCSSEEEEE-CCHH---HHTTCTTCCEEECCSS-EEEECCCT
T ss_pred             cCcCCEEECcCCcCCCccchHHh------cCCCccEEECCCCcccCc-CCHH---HHhcCCCCCEEeCcCC-ccCccccH
Confidence            36666666666543323322222      266666666665422101 1100   0345666677777664 45445565


Q ss_pred             CC---C-cccEEEEccccCc---cccCCC--CCccceEEEcCCCCccccccccccCCCCceeeccccchhhccCCCCCCC
Q 038658          493 HL---P-ALEMLVIGGCEEL---LVSITS--LPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRL  563 (831)
Q Consensus       493 ~l---~-~L~~L~l~~~~~l---~~~~~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  563 (831)
                      .+   + +|+.|++++|...   ...+..  +++|++|++++|......                        +.....+
T Consensus       362 ~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~------------------------p~~l~~l  417 (768)
T 3rgz_A          362 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI------------------------PPTLSNC  417 (768)
T ss_dssp             THHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEEC------------------------CGGGGGC
T ss_pred             HHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccccc------------------------CHHHhcC
Confidence            32   2 6666666666522   222222  556666666666532211                        1112345


Q ss_pred             CCCcEEEEccCCCcchhcccCCcccccCCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEeccCCCCcccccc
Q 038658          564 PKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQS  643 (831)
Q Consensus       564 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~  643 (831)
                      ++|+.|++++|....    .....+..+++|+.|++++|.-...++.. +..       .++|++|++++|...+.+|..
T Consensus       418 ~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~-------l~~L~~L~L~~N~l~~~~p~~  485 (768)
T 3rgz_A          418 SELVSLHLSFNYLSG----TIPSSLGSLSKLRDLKLWLNMLEGEIPQE-LMY-------VKTLETLILDFNDLTGEIPSG  485 (768)
T ss_dssp             TTCCEEECCSSEEES----CCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGG-------CTTCCEEECCSSCCCSCCCGG
T ss_pred             CCCCEEECcCCcccC----cccHHHhcCCCCCEEECCCCcccCcCCHH-HcC-------CCCceEEEecCCcccCcCCHH
Confidence            667777776664221    22333466677777777665322233221 111       145777777777666666666


Q ss_pred             cCCCCCCCeEEEecCCCCccccCCCC-CCCccEEEEecCCCCcccccccccCCCCCcCeEEEccCCCcceeccC------
Q 038658          644 LLSLSSLREIEIYNCSSFVSFPEVAL-PSKVRSISIHRCDALKSLPEAWMCDANLSLEILTISRCHSLTYIAEV------  716 (831)
Q Consensus       644 l~~l~~L~~L~L~~~~~l~~l~~~~~-~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~------  716 (831)
                      +..+++|++|++++|.....+|.... +++|++|++++|...+.+|..+..  +++|+.|++++|+-...+|..      
T Consensus       486 l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~--l~~L~~L~Ls~N~l~g~ip~~~~~~~~  563 (768)
T 3rgz_A          486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD--CRSLIWLDLNTNLFNGTIPAAMFKQSG  563 (768)
T ss_dssp             GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGG--CTTCCEEECCSSEEESBCCGGGGTTTT
T ss_pred             HhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcC--CCCCCEEECCCCccCCcCChHHhcccc
Confidence            67777777777777654445554322 667777777776665566666665  677777777666433233321      


Q ss_pred             -----------------------------------------------------------------CCCCCCceEEEecCC
Q 038658          717 -----------------------------------------------------------------QLPPSLKNVVIRNCD  731 (831)
Q Consensus       717 -----------------------------------------------------------------~~~~~L~~L~l~~c~  731 (831)
                                                                                       ...++|+.|+++++.
T Consensus       564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~  643 (768)
T 3rgz_A          564 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM  643 (768)
T ss_dssp             CBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSC
T ss_pred             hhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCc
Confidence                                                                             113567888887754


Q ss_pred             CCCccccccCccCCcccccCccccceEEEecCCCcccccchhhhhhhhhccccCCCCCCcCeeEEccCCchhhhhhcCCC
Q 038658          732 NVRTLTVEEGIQSSSSRRYTSSLLEHLHIESCPSLTCIFSKNELLATLESLEVGNLPPSLKSLEVLSCSKLESIAERLDN  811 (831)
Q Consensus       732 ~l~~l~~~~~~~~~~~~~l~~~~L~~L~i~~c~~l~~i~~~~~~~~~l~~l~~~~l~~~L~~L~l~~~~~l~~l~~~~~~  811 (831)
                      --..+  |..+..     ++.  |+.|++++|.-...+..           ..+.+ ++|+.|++++|.....+|..+..
T Consensus       644 l~g~i--p~~l~~-----l~~--L~~L~Ls~N~l~g~ip~-----------~l~~L-~~L~~LdLs~N~l~g~ip~~l~~  702 (768)
T 3rgz_A          644 LSGYI--PKEIGS-----MPY--LFILNLGHNDISGSIPD-----------EVGDL-RGLNILDLSSNKLDGRIPQAMSA  702 (768)
T ss_dssp             CBSCC--CGGGGG-----CTT--CCEEECCSSCCCSCCCG-----------GGGGC-TTCCEEECCSSCCEECCCGGGGG
T ss_pred             ccccC--CHHHhc-----ccc--CCEEeCcCCccCCCCCh-----------HHhCC-CCCCEEECCCCcccCcCChHHhC
Confidence            33355  666665     777  88888888755444220           11334 78999999998877788999999


Q ss_pred             CCCCceEEecCCCCCCCCCC
Q 038658          812 NTSLETITIISCKNLKNLPT  831 (831)
Q Consensus       812 l~~L~~L~i~~C~~l~~lp~  831 (831)
                      +++|++|++++|+--..+|+
T Consensus       703 l~~L~~L~ls~N~l~g~iP~  722 (768)
T 3rgz_A          703 LTMLTEIDLSNNNLSGPIPE  722 (768)
T ss_dssp             CCCCSEEECCSSEEEEECCS
T ss_pred             CCCCCEEECcCCcccccCCC
Confidence            99999999999976666663

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=9.4e-41  Score=390.49  Aligned_cols=558  Identities=19%  Similarity=0.121  Sum_probs=351.0

Q ss_pred             cceEEEEeCCCCccc----cCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccc--cccCccccc
Q 038658          192 QRLRVFSLCGYWISE----LPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCA--GMGNLIKLH  265 (831)
Q Consensus       192 ~~L~~L~L~~~~i~~----lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~--~i~~L~~L~  265 (831)
                      .+++.|+|+++.+..    +|.++.++++|++++++.+.+..+|+.++++++|++|||++|...+.+|.  .++++++|+
T Consensus        50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~  129 (768)
T 3rgz_A           50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLK  129 (768)
T ss_dssp             TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCC
T ss_pred             CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCC
Confidence            578999999988764    78899999999999999999888889999999999999999987777888  899999999


Q ss_pred             ccccCCCCCcccccCCC-CCccccccccceEecCCCCCc------chhhhcccccc-CeeeEcccccccccCCCCcceEE
Q 038658          266 HLNNSNTDSLEEMPLGI-GKLTCLQTLCNFVVGKDSGSR------LRELKLLTHLR-GTLTISKLENAQLDGKKNLKVLM  337 (831)
Q Consensus       266 ~L~l~~~~~~~~~p~~~-~~L~~L~~L~~~~~~~~~~~~------~~~l~~L~~L~-~~l~i~~l~~~~l~~~~~L~~L~  337 (831)
                      +|++++|...+.+|..+ +++++|++|+...... .+..      +..+++|+.|. ....+...  ..+..+++|++|+
T Consensus       130 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~l~~L~~L~  206 (768)
T 3rgz_A          130 FLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI-SGANVVGWVLSDGCGELKHLAISGNKISGD--VDVSRCVNLEFLD  206 (768)
T ss_dssp             EEECCSSEEECCSSCCSCCCCTTCSEEECCSSCC-EEETHHHHHHTTCCTTCCEEECCSSEEESC--CBCTTCTTCCEEE
T ss_pred             EEECcCCccCCcCCHHHhccCCCCCEEECCCCcc-CCcCChhhhhhccCCCCCEEECCCCccccc--CCcccCCcCCEEE
Confidence            99999998777777765 8899999984321111 0000      11122222111 01111111  1224455555555


Q ss_pred             EEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCC-CCCccCCCCCCCceeEEEEecCCCCCCCCCCCCCCCc
Q 038658          338 LRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGT-KFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSL  416 (831)
Q Consensus       338 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L  416 (831)
                      +++|.....            ...+..+++|+.|++++|.+. .+|.++..  +++|+.|++++|.+.+.+|.. .+++|
T Consensus       207 Ls~n~l~~~------------~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~--l~~L~~L~Ls~n~l~~~~~~~-~l~~L  271 (768)
T 3rgz_A          207 VSSNNFSTG------------IPFLGDCSALQHLDISGNKLSGDFSRAIST--CTELKLLNISSNQFVGPIPPL-PLKSL  271 (768)
T ss_dssp             CCSSCCCSC------------CCBCTTCCSCCEEECCSSCCCSCHHHHTTT--CSSCCEEECCSSCCEESCCCC-CCTTC
T ss_pred             CcCCcCCCC------------CcccccCCCCCEEECcCCcCCCcccHHHhc--CCCCCEEECCCCcccCccCcc-ccCCC
Confidence            554443221            111444555555555555544 23444433  555555555555554444433 45555


Q ss_pred             ceEEeccccCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCCC----
Q 038658          417 KHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPE----  492 (831)
Q Consensus       417 ~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~----  492 (831)
                      ++|++++|.....++..+.+     .+++|+.|++.++.-.     ...+..++.+++|++|++++| .+.+.+|.    
T Consensus       272 ~~L~L~~n~l~~~ip~~~~~-----~~~~L~~L~Ls~n~l~-----~~~p~~~~~l~~L~~L~L~~n-~l~~~ip~~~l~  340 (768)
T 3rgz_A          272 QYLSLAENKFTGEIPDFLSG-----ACDTLTGLDLSGNHFY-----GAVPPFFGSCSLLESLALSSN-NFSGELPMDTLL  340 (768)
T ss_dssp             CEEECCSSEEEESCCCCSCT-----TCTTCSEEECCSSEEE-----ECCCGGGGGCTTCCEEECCSS-EEEEECCHHHHT
T ss_pred             CEEECcCCccCCccCHHHHh-----hcCcCCEEECcCCcCC-----CccchHHhcCCCccEEECCCC-cccCcCCHHHHh
Confidence            55555554322222221111     1355555555543211     111222344555555555553 33334442    


Q ss_pred             CCCcccEEEEccccC---ccccCCCCC-ccceEEEcCCCCccccccccccCCCCceeeccccchhhccCCCCCCCCCCcE
Q 038658          493 HLPALEMLVIGGCEE---LLVSITSLP-ALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEE  568 (831)
Q Consensus       493 ~l~~L~~L~l~~~~~---l~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  568 (831)
                      .+++|+.|++++|..   ++..+..++ +|+.|++++|.......                      .......+++|++
T Consensus       341 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~----------------------~~~~~~~~~~L~~  398 (768)
T 3rgz_A          341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL----------------------PNLCQNPKNTLQE  398 (768)
T ss_dssp             TCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECC----------------------TTTTCSTTCCCCE
T ss_pred             cCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcC----------------------hhhhhcccCCccE
Confidence            345555555555541   222222233 55555555554211000                      0001112678999


Q ss_pred             EEEccCCCcchhcccCCcccccCCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEeccCCCCcccccccCCCC
Q 038658          569 LEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSLLSLS  648 (831)
Q Consensus       569 L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~l~~l~  648 (831)
                      |++++|....    .....+..+++|++|++++| .+.......+..      + ++|++|++++|...+.+|..+..++
T Consensus       399 L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~l~~------l-~~L~~L~L~~n~l~~~~p~~~~~l~  466 (768)
T 3rgz_A          399 LYLQNNGFTG----KIPPTLSNCSELVSLHLSFN-YLSGTIPSSLGS------L-SKLRDLKLWLNMLEGEIPQELMYVK  466 (768)
T ss_dssp             EECCSSEEEE----ECCGGGGGCTTCCEEECCSS-EEESCCCGGGGG------C-TTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred             EECCCCcccc----ccCHHHhcCCCCCEEECcCC-cccCcccHHHhc------C-CCCCEEECCCCcccCcCCHHHcCCC
Confidence            9999987432    23445688999999999996 454332222222      2 5899999999998889999999999


Q ss_pred             CCCeEEEecCCCCccccCCC-CCCCccEEEEecCCCCcccccccccCCCCCcCeEEEccCCCcceeccC-CCCCCCceEE
Q 038658          649 SLREIEIYNCSSFVSFPEVA-LPSKVRSISIHRCDALKSLPEAWMCDANLSLEILTISRCHSLTYIAEV-QLPPSLKNVV  726 (831)
Q Consensus       649 ~L~~L~L~~~~~l~~l~~~~-~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~  726 (831)
                      +|++|++++|...+.+|... .+++|++|++++|.....+|..+..  +++|++|++++|.-...+|.. ..+++|+.|+
T Consensus       467 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~--l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  544 (768)
T 3rgz_A          467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR--LENLAILKLSNNSFSGNIPAELGDCRSLIWLD  544 (768)
T ss_dssp             TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG--CTTCCEEECCSSCCEEECCGGGGGCTTCCEEE
T ss_pred             CceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhc--CCCCCEEECCCCcccCcCCHHHcCCCCCCEEE
Confidence            99999999996555666432 2899999999999887789988887  999999999998765567754 4568999999


Q ss_pred             EecCCCCCccccccCccCC-------------------------------------------------------------
Q 038658          727 IRNCDNVRTLTVEEGIQSS-------------------------------------------------------------  745 (831)
Q Consensus       727 l~~c~~l~~l~~~~~~~~~-------------------------------------------------------------  745 (831)
                      +++|+-...+  |..+...                                                             
T Consensus       545 Ls~N~l~g~i--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g  622 (768)
T 3rgz_A          545 LNTNLFNGTI--PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG  622 (768)
T ss_dssp             CCSSEEESBC--CGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEE
T ss_pred             CCCCccCCcC--ChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecc
Confidence            9987544333  2221110                                                             


Q ss_pred             ----cccccCccccceEEEecCCCcccccchhhhhhhhhccccCCCCCCcCeeEEccCCchhhhhhcCCCCCCCceEEec
Q 038658          746 ----SSRRYTSSLLEHLHIESCPSLTCIFSKNELLATLESLEVGNLPPSLKSLEVLSCSKLESIAERLDNNTSLETITII  821 (831)
Q Consensus       746 ----~~~~l~~~~L~~L~i~~c~~l~~i~~~~~~~~~l~~l~~~~l~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~i~  821 (831)
                          ....+++  |++|++++|.-.+.+..           ..+.+ ++|+.|++++|.....+|..+..+++|+.|+++
T Consensus       623 ~~~~~~~~l~~--L~~LdLs~N~l~g~ip~-----------~l~~l-~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs  688 (768)
T 3rgz_A          623 HTSPTFDNNGS--MMFLDMSYNMLSGYIPK-----------EIGSM-PYLFILNLGHNDISGSIPDEVGDLRGLNILDLS  688 (768)
T ss_dssp             ECCCSCSSSBC--CCEEECCSSCCBSCCCG-----------GGGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred             cCchhhhcccc--ccEEECcCCcccccCCH-----------HHhcc-ccCCEEeCcCCccCCCCChHHhCCCCCCEEECC
Confidence                0012455  88888888754444220           12334 789999999988767889999999999999999


Q ss_pred             CCCCCCCCC
Q 038658          822 SCKNLKNLP  830 (831)
Q Consensus       822 ~C~~l~~lp  830 (831)
                      +|.--..+|
T Consensus       689 ~N~l~g~ip  697 (768)
T 3rgz_A          689 SNKLDGRIP  697 (768)
T ss_dssp             SSCCEECCC
T ss_pred             CCcccCcCC
Confidence            997665666

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=4.3e-37  Score=357.09  Aligned_cols=517  Identities=16%  Similarity=0.105  Sum_probs=315.2

Q ss_pred             CCcceEEEEeCCCCccccCc-cccCCCCCceeecCCCCCCccc-hhhhccCCccEEeecCcCccccccccccCccccccc
Q 038658          190 KLQRLRVFSLCGYWISELPD-SIGDLRYLRYLNLSGTQIRTLP-ESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHL  267 (831)
Q Consensus       190 ~l~~L~~L~L~~~~i~~lp~-~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L  267 (831)
                      ++++|++|+|++|.++.+|. +|+++++|++|++++|.++.+| ..++++++|++|++++|......|..++++++|++|
T Consensus        71 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  150 (680)
T 1ziw_A           71 KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQEL  150 (680)
T ss_dssp             HCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEE
T ss_pred             cccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEE
Confidence            44445555555444444433 3444455555555544444443 334444555555554444333333444444455555


Q ss_pred             ccCCCCCcccccCCCC--CccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCC
Q 038658          268 NNSNTDSLEEMPLGIG--KLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTD  345 (831)
Q Consensus       268 ~l~~~~~~~~~p~~~~--~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~  345 (831)
                      ++++|.+.+..|..++  .+++|+.|.                    +. ...+..+....+..+.+|+.|++..+... 
T Consensus       151 ~L~~n~l~~~~~~~~~~~~~~~L~~L~--------------------L~-~n~l~~~~~~~~~~l~~L~~L~l~~~~l~-  208 (680)
T 1ziw_A          151 LLSNNKIQALKSEELDIFANSSLKKLE--------------------LS-SNQIKEFSPGCFHAIGRLFGLFLNNVQLG-  208 (680)
T ss_dssp             ECCSSCCCCBCHHHHGGGTTCEESEEE--------------------CT-TCCCCCBCTTGGGGSSEECEEECTTCCCH-
T ss_pred             EccCCcccccCHHHhhccccccccEEE--------------------CC-CCcccccChhhhhhhhhhhhhhccccccC-
Confidence            5544442221111111  223333331                    11 22333444455666777777776544321 


Q ss_pred             CCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCC-CccCCCCCCCceeEEEEecCCCCCCCC-CCCCCCCcceEEecc
Q 038658          346 GSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKF-PIWLGDSSFSNLVTLKFEDCGMCTTLP-SVGQLPSLKHLAVRR  423 (831)
Q Consensus       346 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~  423 (831)
                          ...  .......+ ..++|+.|+++++..... |.++.....++|+.|++++|.+.+..+ .++.+++|+.|++++
T Consensus       209 ----~~~--~~~~~~~l-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  281 (680)
T 1ziw_A          209 ----PSL--TEKLCLEL-ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY  281 (680)
T ss_dssp             ----HHH--HHHHHHHH-TTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             ----hhh--HHHHHHHh-hhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCC
Confidence                000  00111111 247899999998887654 445443112459999999998877665 688899999999988


Q ss_pred             ccCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCC----CCCCCCCcccEEeEcCCcCcccCCCC---CCCc
Q 038658          424 MSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGST----QGVEGFPKLRELEVIGCSKLKGTFPE---HLPA  496 (831)
Q Consensus       424 ~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~----~~~~~~~~L~~L~l~~c~~l~~~~p~---~l~~  496 (831)
                      +......+..+      ..+++|+.|++.+......+.....+    ..+..+++|++|++++| .+++..|.   .+++
T Consensus       282 n~l~~~~~~~~------~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~  354 (680)
T 1ziw_A          282 NNIQHLFSHSL------HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKSNMFTGLIN  354 (680)
T ss_dssp             CCBSEECTTTT------TTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC-CBCCCCTTTTTTCTT
T ss_pred             CccCccChhhh------cCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCC-ccCCCChhHhccccC
Confidence            75333322222      23888999988753211110000111    12567899999999994 66644443   5788


Q ss_pred             ccEEEEccccCcccc-----CC--CCCccceEEEcCCCCccccccccccCCCCceeeccccchhhccCCCCCCCCCCcEE
Q 038658          497 LEMLVIGGCEELLVS-----IT--SLPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEEL  569 (831)
Q Consensus       497 L~~L~l~~~~~l~~~-----~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  569 (831)
                      |+.|++++|..-...     +.  ..++|+.|++++|.....                        .+..+..+++|+.|
T Consensus       355 L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~------------------------~~~~~~~l~~L~~L  410 (680)
T 1ziw_A          355 LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI------------------------ESDAFSWLGHLEVL  410 (680)
T ss_dssp             CCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEE------------------------CTTTTTTCTTCCEE
T ss_pred             CcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeE------------------------ChhhhhCCCCCCEE
Confidence            999999988621111     11  136899999999874432                        12234568899999


Q ss_pred             EEccCCCcchhcccCCcccccCCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEeccCCCC--cccccccCCC
Q 038658          570 EISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGL--VKLPQSLLSL  647 (831)
Q Consensus       570 ~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~--~~l~~~l~~l  647 (831)
                      +++++.....   .+...+..+++|++|++++| .+..+....+...       ++|+.|++++|...  +.+|..+..+
T Consensus       411 ~L~~N~l~~~---~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~-------~~L~~L~l~~n~l~~~~~~p~~~~~l  479 (680)
T 1ziw_A          411 DLGLNEIGQE---LTGQEWRGLENIFEIYLSYN-KYLQLTRNSFALV-------PSLQRLMLRRVALKNVDSSPSPFQPL  479 (680)
T ss_dssp             ECCSSCCEEE---CCSGGGTTCTTCCEEECCSC-SEEECCTTTTTTC-------TTCCEEECTTSCCBCTTCSSCTTTTC
T ss_pred             eCCCCcCccc---cCcccccCcccccEEecCCC-CcceeChhhhhcC-------cccccchhccccccccccCCcccccC
Confidence            9999874332   44456788999999999996 5665554433322       57999999998754  5678889999


Q ss_pred             CCCCeEEEecCCCCccccCCCC--CCCccEEEEecCCCCccccc---------ccccCCCCCcCeEEEccCCCcceeccC
Q 038658          648 SSLREIEIYNCSSFVSFPEVAL--PSKVRSISIHRCDALKSLPE---------AWMCDANLSLEILTISRCHSLTYIAEV  716 (831)
Q Consensus       648 ~~L~~L~L~~~~~l~~l~~~~~--~~~L~~L~l~~c~~l~~l~~---------~~~~~~l~~L~~L~l~~c~~l~~l~~~  716 (831)
                      ++|+.|++++| .++.++...+  +++|++|++++|. ++.++.         .+..  +++|++|++++| .++.+|..
T Consensus       480 ~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~--l~~L~~L~L~~N-~l~~i~~~  554 (680)
T 1ziw_A          480 RNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKG--LSHLHILNLESN-GFDEIPVE  554 (680)
T ss_dssp             TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTT--CTTCCEEECCSS-CCCCCCTT
T ss_pred             CCCCEEECCCC-CCCcCChhhhccccccCEEeCCCCC-ccccchhhccCCcchhhcC--CCCCCEEECCCC-CCCCCCHH
Confidence            99999999998 6777776544  8999999999975 444321         1334  899999999997 67788764


Q ss_pred             --CCCCCCceEEEecCCCCCccccccCc-cCCcccccCccccceEEEecCCCcccccchhhhhhhhhccccCCCCCCcCe
Q 038658          717 --QLPPSLKNVVIRNCDNVRTLTVEEGI-QSSSSRRYTSSLLEHLHIESCPSLTCIFSKNELLATLESLEVGNLPPSLKS  793 (831)
Q Consensus       717 --~~~~~L~~L~l~~c~~l~~l~~~~~~-~~~~~~~l~~~~L~~L~i~~c~~l~~i~~~~~~~~~l~~l~~~~l~~~L~~  793 (831)
                        ...++|++|++++ ++++.+  +.+. ..     +++  |++|++++| .+..+. .. ...       ..+ ++|+.
T Consensus       555 ~~~~l~~L~~L~Ls~-N~l~~l--~~~~~~~-----l~~--L~~L~L~~N-~l~~~~-~~-~~~-------~~~-~~L~~  613 (680)
T 1ziw_A          555 VFKDLFELKIIDLGL-NNLNTL--PASVFNN-----QVS--LKSLNLQKN-LITSVE-KK-VFG-------PAF-RNLTE  613 (680)
T ss_dssp             TTTTCTTCCEEECCS-SCCCCC--CTTTTTT-----CTT--CCEEECTTS-CCCBCC-HH-HHH-------HHH-TTCSE
T ss_pred             HcccccCcceeECCC-CCCCcC--CHhHhCC-----CCC--CCEEECCCC-cCCccC-hh-Hhc-------ccc-cccCE
Confidence              3457999999976 578877  5443 34     777  999999997 455422 00 000       012 78999


Q ss_pred             eEEccCCchh
Q 038658          794 LEVLSCSKLE  803 (831)
Q Consensus       794 L~l~~~~~l~  803 (831)
                      |+++++|-..
T Consensus       614 l~l~~N~~~c  623 (680)
T 1ziw_A          614 LDMRFNPFDC  623 (680)
T ss_dssp             EECTTCCCCB
T ss_pred             EEccCCCccc
Confidence            9999988543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=8.8e-37  Score=349.63  Aligned_cols=107  Identities=17%  Similarity=0.120  Sum_probs=85.9

Q ss_pred             cccccccCCcceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCCcc-chhhhccCCccEEeecCcCccccccccccC
Q 038658          183 SILPKLFKLQRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTL-PESVNKLYNLHTLSLEGCRGLRKLCAGMGN  260 (831)
Q Consensus       183 ~~~~~~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~i~~  260 (831)
                      .+|..+.  +.+++|++++|.++.+ |.+|+++++||+|+|++|.+..+ |.+++++++|++|++++|......|..+++
T Consensus        26 ~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  103 (606)
T 3t6q_A           26 EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSG  103 (606)
T ss_dssp             SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSS
T ss_pred             cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcc
Confidence            4455444  3689999999999887 67889999999999999998866 678899999999999998766666888999


Q ss_pred             cccccccccCCCCCcccccCCCCCccccccc
Q 038658          261 LIKLHHLNNSNTDSLEEMPLGIGKLTCLQTL  291 (831)
Q Consensus       261 L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L  291 (831)
                      +++|++|++++|.+....|..++++++|++|
T Consensus       104 l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L  134 (606)
T 3t6q_A          104 PKALKHLFFIQTGISSIDFIPLHNQKTLESL  134 (606)
T ss_dssp             CTTCCEEECTTSCCSCGGGSCCTTCTTCCEE
T ss_pred             cccccEeeccccCcccCCcchhccCCcccEE
Confidence            9999999999998443335667777777777

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3e-35  Score=341.56  Aligned_cols=532  Identities=17%  Similarity=0.149  Sum_probs=342.9

Q ss_pred             cccccccCCcceEEEEeCCCCccccC-ccccCCCCCceeecCCCCCCcc-chhhhccCCccEEeecCcCccccccc-ccc
Q 038658          183 SILPKLFKLQRLRVFSLCGYWISELP-DSIGDLRYLRYLNLSGTQIRTL-PESVNKLYNLHTLSLEGCRGLRKLCA-GMG  259 (831)
Q Consensus       183 ~~~~~~~~l~~L~~L~L~~~~i~~lp-~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~-~i~  259 (831)
                      .+|..+.  +++++|+|++|.++.+| ..|+++++|++|++++|.++.+ |..++++++|++|++++|. +..+|. .|+
T Consensus        18 ~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~   94 (680)
T 1ziw_A           18 QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFA   94 (680)
T ss_dssp             SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTTTT
T ss_pred             ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc-cCccChhhhc
Confidence            4555543  68999999999999885 4689999999999999999976 6788999999999999986 556766 599


Q ss_pred             CcccccccccCCCCCccccc-CCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEE
Q 038658          260 NLIKLHHLNNSNTDSLEEMP-LGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLML  338 (831)
Q Consensus       260 ~L~~L~~L~l~~~~~~~~~p-~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l  338 (831)
                      ++++|++|++++|.+ ..+| ..++++++|++|+.                    . ...+.......+..+++|++|++
T Consensus        95 ~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L--------------------s-~n~l~~~~~~~~~~l~~L~~L~L  152 (680)
T 1ziw_A           95 FCTNLTELHLMSNSI-QKIKNNPFVKQKNLITLDL--------------------S-HNGLSSTKLGTQVQLENLQELLL  152 (680)
T ss_dssp             TCTTCSEEECCSSCC-CCCCSCTTTTCTTCCEEEC--------------------C-SSCCSCCCCCSSSCCTTCCEEEC
T ss_pred             cCCCCCEEECCCCcc-CccChhHccccCCCCEEEC--------------------C-CCcccccCchhhcccccCCEEEc
Confidence            999999999999984 4555 66999999999932                    1 22233334455778899999999


Q ss_pred             EeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCc-cCCCCCC---------------------------
Q 038658          339 RWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPI-WLGDSSF---------------------------  390 (831)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~~---------------------------  390 (831)
                      ++|......  ..      .. .....++|+.|++++|....++. ++..  +                           
T Consensus       153 ~~n~l~~~~--~~------~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~l~~~~l~~~~~~~~~~~l~~  221 (680)
T 1ziw_A          153 SNNKIQALK--SE------EL-DIFANSSLKKLELSSNQIKEFSPGCFHA--IGRLFGLFLNNVQLGPSLTEKLCLELAN  221 (680)
T ss_dssp             CSSCCCCBC--HH------HH-GGGTTCEESEEECTTCCCCCBCTTGGGG--SSEECEEECTTCCCHHHHHHHHHHHHTT
T ss_pred             cCCcccccC--HH------Hh-hccccccccEEECCCCcccccChhhhhh--hhhhhhhhccccccChhhHHHHHHHhhh
Confidence            887654320  00      00 11234789999999998776543 3322  3                           


Q ss_pred             CceeEEEEecCCCCCCCC-CCCCCCC--cceEEeccccCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCC
Q 038658          391 SNLVTLKFEDCGMCTTLP-SVGQLPS--LKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQ  467 (831)
Q Consensus       391 ~~L~~L~l~~~~~~~~~~-~l~~l~~--L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  467 (831)
                      ++|+.|++++|.+.+..| .+..++.  |+.|+++++. +..++...+     ..+++|+.|++.+.. +...    .+.
T Consensus       222 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~-l~~~~~~~~-----~~l~~L~~L~L~~n~-l~~~----~~~  290 (680)
T 1ziw_A          222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN-LNVVGNDSF-----AWLPQLEYFFLEYNN-IQHL----FSH  290 (680)
T ss_dssp             SCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC-CCEECTTTT-----TTCTTCCEEECCSCC-BSEE----CTT
T ss_pred             ccccEEEccCCcccccChhHhhccCcCCCCEEECCCCC-cCccCcccc-----cCcccccEeeCCCCc-cCcc----Chh
Confidence            445666666666555444 4555443  7777777654 333322222     226677777776632 1111    122


Q ss_pred             CCCCCCcccEEeEcCCcCccc-----CCC-------CCCCcccEEEEccccCc---cccCCCCCccceEEEcCCCCcccc
Q 038658          468 GVEGFPKLRELEVIGCSKLKG-----TFP-------EHLPALEMLVIGGCEEL---LVSITSLPALSKLEIGGCKKVVWR  532 (831)
Q Consensus       468 ~~~~~~~L~~L~l~~c~~l~~-----~~p-------~~l~~L~~L~l~~~~~l---~~~~~~l~~L~~L~l~~~~~~~~~  532 (831)
                      .+..+++|+.|++++|. ..+     .+|       ..+++|+.|++++|...   ...+..+++|++|++++|......
T Consensus       291 ~~~~l~~L~~L~L~~~~-~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~  369 (680)
T 1ziw_A          291 SLHGLFNVRYLNLKRSF-TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT  369 (680)
T ss_dssp             TTTTCTTCCEEECTTCB-CCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCE
T ss_pred             hhcCCCCccEEeccchh-hhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhh
Confidence            25567777777776632 111     122       24567777777776522   233556777777777766521100


Q ss_pred             ccccccCCCCceeeccccchhhccCCCCC--CCCCCcEEEEccCCCcchhcccCCcccccCCCccEEeeecCCCcccchh
Q 038658          533 SETDHLGSQNSVVCRDTLNQVLLAGPLKP--RLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVA  610 (831)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~  610 (831)
                                            +....+.  ..++|+.|+++++....    .....+..+++|+.|+++++.--..++.
T Consensus       370 ----------------------l~~~~f~~~~~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~~~  423 (680)
T 1ziw_A          370 ----------------------LTNETFVSLAHSPLHILNLTKNKISK----IESDAFSWLGHLEVLDLGLNEIGQELTG  423 (680)
T ss_dssp             ----------------------ECTTTTGGGTTSCCCEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCEEECCS
T ss_pred             ----------------------cchhhhcccccCcCceEECCCCCCCe----EChhhhhCCCCCCEEeCCCCcCccccCc
Confidence                                  0000011  12578888888876322    3445567888888888888533233443


Q ss_pred             hhhhhHhhhhcccCCccEEEeccCCCCcccccccCCCCCCCeEEEecCCC--CccccCCC-CCCCccEEEEecCCCCccc
Q 038658          611 EEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSLLSLSSLREIEIYNCSS--FVSFPEVA-LPSKVRSISIHRCDALKSL  687 (831)
Q Consensus       611 ~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~--l~~l~~~~-~~~~L~~L~l~~c~~l~~l  687 (831)
                      ..+...       ++|++|++++|......+..+..+++|++|++++|..  +..+|... .+++|+.|++++|. ++.+
T Consensus       424 ~~~~~l-------~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~-l~~i  495 (680)
T 1ziw_A          424 QEWRGL-------ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN-IANI  495 (680)
T ss_dssp             GGGTTC-------TTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSC-CCCC
T ss_pred             ccccCc-------ccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCC-CCcC
Confidence            333222       5788888888886666667788888888888888742  12334322 27888999998865 4455


Q ss_pred             cc-ccccCCCCCcCeEEEccCCCcceeccC----------CCCCCCceEEEecCCCCCccccccC-ccCCcccccCcccc
Q 038658          688 PE-AWMCDANLSLEILTISRCHSLTYIAEV----------QLPPSLKNVVIRNCDNVRTLTVEEG-IQSSSSRRYTSSLL  755 (831)
Q Consensus       688 ~~-~~~~~~l~~L~~L~l~~c~~l~~l~~~----------~~~~~L~~L~l~~c~~l~~l~~~~~-~~~~~~~~l~~~~L  755 (831)
                      +. .+..  +++|++|++++| .++.++..          ..+++|++|+++++ +++.+  +.+ +..     +++  |
T Consensus       496 ~~~~~~~--l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i--~~~~~~~-----l~~--L  562 (680)
T 1ziw_A          496 NDDMLEG--LEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEI--PVEVFKD-----LFE--L  562 (680)
T ss_dssp             CTTTTTT--CTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCC--CTTTTTT-----CTT--C
T ss_pred             Chhhhcc--ccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCC--CHHHccc-----ccC--c
Confidence            43 4554  888999999886 45554321          23468889998874 67666  443 444     677  9


Q ss_pred             ceEEEecCCCcccccchhhhhhhhhccccC---CCCCCcCeeEEccCCchhhh-hhcCC-CCCCCceEEecCCCC
Q 038658          756 EHLHIESCPSLTCIFSKNELLATLESLEVG---NLPPSLKSLEVLSCSKLESI-AERLD-NNTSLETITIISCKN  825 (831)
Q Consensus       756 ~~L~i~~c~~l~~i~~~~~~~~~l~~l~~~---~l~~~L~~L~l~~~~~l~~l-~~~~~-~l~~L~~L~i~~C~~  825 (831)
                      ++|+++++ .++. +            +..   .+ ++|+.|++++|. ++.+ +..+. .+++|+.|+++++|-
T Consensus       563 ~~L~Ls~N-~l~~-l------------~~~~~~~l-~~L~~L~L~~N~-l~~~~~~~~~~~~~~L~~l~l~~N~~  621 (680)
T 1ziw_A          563 KIIDLGLN-NLNT-L------------PASVFNNQ-VSLKSLNLQKNL-ITSVEKKVFGPAFRNLTELDMRFNPF  621 (680)
T ss_dssp             CEEECCSS-CCCC-C------------CTTTTTTC-TTCCEEECTTSC-CCBCCHHHHHHHHTTCSEEECTTCCC
T ss_pred             ceeECCCC-CCCc-C------------CHhHhCCC-CCCCEEECCCCc-CCccChhHhcccccccCEEEccCCCc
Confidence            99999875 4444 2            222   23 789999999875 6665 44454 678999999988763

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.6e-35  Score=339.15  Aligned_cols=204  Identities=17%  Similarity=0.069  Sum_probs=151.4

Q ss_pred             cccccccCCcceEEEEeCCCCccccC-ccccCCCCCceeecCCCCCCcc-chhhhccCCccEEeecCcCccccccccccC
Q 038658          183 SILPKLFKLQRLRVFSLCGYWISELP-DSIGDLRYLRYLNLSGTQIRTL-PESVNKLYNLHTLSLEGCRGLRKLCAGMGN  260 (831)
Q Consensus       183 ~~~~~~~~l~~L~~L~L~~~~i~~lp-~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~i~~  260 (831)
                      .+|..+.  +++++|++++|.++.++ ..|.++++||+|++++|.++.+ |.+++++++|++|++++|......|..|++
T Consensus        25 ~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~  102 (606)
T 3vq2_A           25 KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSG  102 (606)
T ss_dssp             SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTT
T ss_pred             cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCC
Confidence            4555544  68999999999999885 5899999999999999999987 568899999999999998755556888999


Q ss_pred             cccccccccCCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccc-cccccCCCCcceEEEE
Q 038658          261 LIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLE-NAQLDGKKNLKVLMLR  339 (831)
Q Consensus       261 L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~-~~~l~~~~~L~~L~l~  339 (831)
                      +++|++|++++|...+..|..++++++|++|..                    . ...+..+. ...+.++++|++|+++
T Consensus       103 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L--------------------~-~n~l~~~~lp~~~~~l~~L~~L~Ls  161 (606)
T 3vq2_A          103 LTSLENLVAVETKLASLESFPIGQLITLKKLNV--------------------A-HNFIHSCKLPAYFSNLTNLVHVDLS  161 (606)
T ss_dssp             CTTCCEEECTTSCCCCSSSSCCTTCTTCCEEEC--------------------C-SSCCCCCCCCGGGGTCTTCCEEECC
T ss_pred             cccCCEEEccCCccccccccccCCCCCCCEEeC--------------------C-CCcccceechHhHhhcCCCCEEEcc
Confidence            999999999999844444467999999999832                    1 12222222 3567888999999998


Q ss_pred             eecCCCCCChhhhhhHHhhhcCCCCCCC----ccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCC-CCC-CCCCC
Q 038658          340 WTNSTDGSSLREAETQKGVLDMLKPHKN----LEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCT-TLP-SVGQL  413 (831)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~----L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~-~~~-~l~~l  413 (831)
                      +|.....           ....+..+.+    +..|++++|.+..+|.....  ..+|+.|++++|...+ ..| .++.+
T Consensus       162 ~n~l~~~-----------~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~--~~~L~~L~L~~n~~~~~~~~~~~~~l  228 (606)
T 3vq2_A          162 YNYIQTI-----------TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQ--GIKLHELTLRGNFNSSNIMKTCLQNL  228 (606)
T ss_dssp             SSCCCEE-----------CTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTT--TCEEEEEEEESCCSCHHHHHHHHHTT
T ss_pred             CCcceec-----------ChhhhhhhhccccccceeeccCCCcceeCccccc--CceeeeeeccCCccchhHHHHHhccc
Confidence            8765432           1122222233    45789999888887776654  3489999999987653 223 56677


Q ss_pred             CCcceEEec
Q 038658          414 PSLKHLAVR  422 (831)
Q Consensus       414 ~~L~~L~L~  422 (831)
                      +.|+.+.+.
T Consensus       229 ~~L~~l~l~  237 (606)
T 3vq2_A          229 AGLHVHRLI  237 (606)
T ss_dssp             TTCEEEEEE
T ss_pred             ccccccccc
Confidence            788877765

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.6e-35  Score=337.45  Aligned_cols=482  Identities=18%  Similarity=0.161  Sum_probs=222.5

Q ss_pred             cccCCcceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCCcc-chhhhccCCccEEeecCcCccccccccccCcccc
Q 038658          187 KLFKLQRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTL-PESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKL  264 (831)
Q Consensus       187 ~~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L  264 (831)
                      .+.++++|++|++++|.++.+ |.+|+++++||+|+|++|.++.+ |.+++++++|++|++++|......|..++++++|
T Consensus        51 ~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  130 (606)
T 3vq2_A           51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL  130 (606)
T ss_dssp             TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTC
T ss_pred             hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCC
Confidence            333555555555555555544 34455555555555555555544 4455555555555555544322222445555555


Q ss_pred             cccccCCCCCcc-cccCCCCCccccccccceEec--CCCCCcchhhhcccc----cc-CeeeEcccccccccCCCCcceE
Q 038658          265 HHLNNSNTDSLE-EMPLGIGKLTCLQTLCNFVVG--KDSGSRLRELKLLTH----LR-GTLTISKLENAQLDGKKNLKVL  336 (831)
Q Consensus       265 ~~L~l~~~~~~~-~~p~~~~~L~~L~~L~~~~~~--~~~~~~~~~l~~L~~----L~-~~l~i~~l~~~~l~~~~~L~~L  336 (831)
                      ++|++++|...+ .+|..++++++|++|......  ......+..+.+++.    +. ....+..+....+... +|+.|
T Consensus       131 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L  209 (606)
T 3vq2_A          131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHEL  209 (606)
T ss_dssp             CEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEE
T ss_pred             CEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeee
Confidence            555555555322 345555555555555221111  111122222322221    10 0222333333444444 78889


Q ss_pred             EEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCC------Cc-cCCCCCCCceeEEEE-ecCCCCCCCC
Q 038658          337 MLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKF------PI-WLGDSSFSNLVTLKF-EDCGMCTTLP  408 (831)
Q Consensus       337 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~------p~-~~~~~~~~~L~~L~l-~~~~~~~~~~  408 (831)
                      ++++|....          ......+..++.++.+.+........      +. ++....--+++.+++ ..+.+.+..|
T Consensus       210 ~L~~n~~~~----------~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~  279 (606)
T 3vq2_A          210 TLRGNFNSS----------NIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV  279 (606)
T ss_dssp             EEESCCSCH----------HHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGG
T ss_pred             eccCCccch----------hHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccccccccccc
Confidence            888775421          11233455667777777765543321      11 111101125667777 4555566666


Q ss_pred             CCCCCCCcceEEeccccCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCccc
Q 038658          409 SVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKG  488 (831)
Q Consensus       409 ~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~  488 (831)
                      .+..+++|+.|++.++.. ..++ .                                   +..+++|++|++++| .+. 
T Consensus       280 ~~~~l~~L~~L~l~~~~~-~~l~-~-----------------------------------l~~~~~L~~L~l~~n-~l~-  320 (606)
T 3vq2_A          280 KFHCLANVSAMSLAGVSI-KYLE-D-----------------------------------VPKHFKWQSLSIIRC-QLK-  320 (606)
T ss_dssp             SCGGGTTCSEEEEESCCC-CCCC-C-----------------------------------CCTTCCCSEEEEESC-CCS-
T ss_pred             ccccCCCCCEEEecCccc-hhhh-h-----------------------------------ccccccCCEEEcccc-cCc-
Confidence            788888999998887542 2222 0                                   223344444444443 222 


Q ss_pred             CCCC-CCCcccEEEEccccCc-cccCCCCCccceEEEcCCCCccccccccccCCCCceeeccccchhhccCCCCCCCCCC
Q 038658          489 TFPE-HLPALEMLVIGGCEEL-LVSITSLPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKL  566 (831)
Q Consensus       489 ~~p~-~l~~L~~L~l~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  566 (831)
                      .+|. .+++|+.|++++|... ...+..+++|+.|++++|........                      ......+++|
T Consensus       321 ~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~----------------------~~~~~~~~~L  378 (606)
T 3vq2_A          321 QFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCC----------------------SYSDLGTNSL  378 (606)
T ss_dssp             SCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEEC----------------------CHHHHCCSCC
T ss_pred             ccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcch----------------------hhhhccCCcc
Confidence            3332 3344444444444211 12233445555555555442211000                      0001134455


Q ss_pred             cEEEEccCCCcchhcccCCcccccCCCccEEeeecCCCcccchh-hhhhhHhhhhcccCCccEEEeccCCCCcccccccC
Q 038658          567 EELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVA-EEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSLL  645 (831)
Q Consensus       567 ~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~l~  645 (831)
                      +.|+++++.. +.   .+ ..+..+++|++|+++++ .+...+. ..+..      + ++|++|++++|...+..|..+.
T Consensus       379 ~~L~L~~n~l-~~---~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~------l-~~L~~L~l~~n~l~~~~~~~~~  445 (606)
T 3vq2_A          379 RHLDLSFNGA-II---MS-ANFMGLEELQHLDFQHS-TLKRVTEFSAFLS------L-EKLLYLDISYTNTKIDFDGIFL  445 (606)
T ss_dssp             CEEECCSCSE-EE---EC-CCCTTCTTCCEEECTTS-EEESTTTTTTTTT------C-TTCCEEECTTSCCEECCTTTTT
T ss_pred             cEeECCCCcc-cc---ch-hhccCCCCCCeeECCCC-ccCCccChhhhhc------c-ccCCEEECcCCCCCccchhhhc
Confidence            5555555441 11   22 22345555555555553 2222211 11111      1 3556666666555555555555


Q ss_pred             CCCCCCeEEEecCCCCcc-ccCC-CCCCCccEEEEecCCCCcccccccccCCCCCcCeEEEccCCCcceeccC-CCCCCC
Q 038658          646 SLSSLREIEIYNCSSFVS-FPEV-ALPSKVRSISIHRCDALKSLPEAWMCDANLSLEILTISRCHSLTYIAEV-QLPPSL  722 (831)
Q Consensus       646 ~l~~L~~L~L~~~~~l~~-l~~~-~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L  722 (831)
                      .+++|++|++++|..... +|.. ..+++|++|++++|...+..|..+..  +++|++|++++|.-....|.. ..+++|
T Consensus       446 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  523 (606)
T 3vq2_A          446 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT--LHRLQLLNMSHNNLLFLDSSHYNQLYSL  523 (606)
T ss_dssp             TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT--CTTCCEEECCSSCCSCEEGGGTTTCTTC
T ss_pred             CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcc--cccCCEEECCCCcCCCcCHHHccCCCcC
Confidence            566666666666532221 2221 12556666666665433333444443  566666666665322222222 233556


Q ss_pred             ceEEEecCCCCCccccccCccCCcccccC-ccccceEEEecCCC
Q 038658          723 KNVVIRNCDNVRTLTVEEGIQSSSSRRYT-SSLLEHLHIESCPS  765 (831)
Q Consensus       723 ~~L~l~~c~~l~~l~~~~~~~~~~~~~l~-~~~L~~L~i~~c~~  765 (831)
                      ++|++++| +++.+  |.++..     ++ +  |++|++++++-
T Consensus       524 ~~L~l~~N-~l~~~--p~~~~~-----l~~~--L~~l~l~~N~~  557 (606)
T 3vq2_A          524 STLDCSFN-RIETS--KGILQH-----FPKS--LAFFNLTNNSV  557 (606)
T ss_dssp             CEEECTTS-CCCCE--ESCGGG-----SCTT--CCEEECCSCCC
T ss_pred             CEEECCCC-cCccc--CHhHhh-----hccc--CcEEEccCCCc
Confidence            66666554 35554  444433     32 4  66666666543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=7.1e-35  Score=333.78  Aligned_cols=480  Identities=12%  Similarity=0.083  Sum_probs=298.7

Q ss_pred             CcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCCcc-chhhhccCC
Q 038658          162 QHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTL-PESVNKLYN  239 (831)
Q Consensus       162 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~  239 (831)
                      ++++.|.+.      .+.+....|..+.++++|++|+|++|.+..+ |.+|+++++|++|++++|.++.+ |..++++++
T Consensus        33 ~~l~~L~Ls------~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  106 (606)
T 3t6q_A           33 NSTECLEFS------FNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA  106 (606)
T ss_dssp             TTCCEEECT------TCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTT
T ss_pred             CcCcEEEcc------CCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhccccc
Confidence            367888543      4455554566677999999999999999877 78899999999999999999876 678999999


Q ss_pred             ccEEeecCcCccccccccccCcccccccccCCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeE
Q 038658          240 LHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTI  319 (831)
Q Consensus       240 L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i  319 (831)
                      |++|++++|......|..++++++|++|++++|...+.-+..+..+++|++|.                    +. .+.+
T Consensus       107 L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~--------------------L~-~n~l  165 (606)
T 3t6q_A          107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLD--------------------FQ-NNAI  165 (606)
T ss_dssp             CCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEE--------------------CC-SSCC
T ss_pred             ccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEE--------------------cc-cCcc
Confidence            99999999875544477799999999999999984442223444588888882                    22 2233


Q ss_pred             cccccccccCCCCcc--eEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCC--------
Q 038658          320 SKLENAQLDGKKNLK--VLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSS--------  389 (831)
Q Consensus       320 ~~l~~~~l~~~~~L~--~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~--------  389 (831)
                      ..+....+..+++|+  .|++++|.....            .........|+.|+++++.  .++..+....        
T Consensus       166 ~~~~~~~~~~l~~L~~l~L~l~~n~l~~~------------~~~~~~~~~L~~L~l~~~~--~~~~~~~~l~~~~l~~l~  231 (606)
T 3t6q_A          166 HYLSKEDMSSLQQATNLSLNLNGNDIAGI------------EPGAFDSAVFQSLNFGGTQ--NLLVIFKGLKNSTIQSLW  231 (606)
T ss_dssp             CEECHHHHHTTTTCCSEEEECTTCCCCEE------------CTTTTTTCEEEEEECTTCS--CHHHHHHHTTTCEEEEEE
T ss_pred             cccChhhhhhhcccceeEEecCCCccCcc------------ChhHhhhccccccccCCch--hHHHHhhhccccchhhee
Confidence            444445677778888  566655543221            1112223466777766553  1111111000        


Q ss_pred             -------------------C--CceeEEEEecCCCCCCCC-CCCCCCCcceEEeccccCceeeCccccCCCCCCCCCCcc
Q 038658          390 -------------------F--SNLVTLKFEDCGMCTTLP-SVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLE  447 (831)
Q Consensus       390 -------------------~--~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~  447 (831)
                                         +  .+|+.|++++|.+....+ .++.+++|+.|+++++. +..+                 
T Consensus       232 ~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~l-----------------  293 (606)
T 3t6q_A          232 LGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSEL-----------------  293 (606)
T ss_dssp             CCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCC-----------------
T ss_pred             chhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCc-cCCC-----------------
Confidence                               0  145555555554443333 24455555555555432 2222                 


Q ss_pred             eeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCC---CCCCcccEEEEccccCc----cccCCCCCccce
Q 038658          448 TLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFP---EHLPALEMLVIGGCEEL----LVSITSLPALSK  520 (831)
Q Consensus       448 ~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p---~~l~~L~~L~l~~~~~l----~~~~~~l~~L~~  520 (831)
                                        |..+..+++|++|++++| .+++..|   ..+++|+.|++++|...    ...+..+++|++
T Consensus       294 ------------------p~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~  354 (606)
T 3t6q_A          294 ------------------PSGLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE  354 (606)
T ss_dssp             ------------------CSSCCSCTTCCEEECTTC-CCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCE
T ss_pred             ------------------ChhhcccccCCEEECccC-CcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCE
Confidence                              222445566666666663 3432222   24556666666666422    123556777777


Q ss_pred             EEEcCCCCccccccccccCCCCceeeccccchhhccCCCCCCCCCCcEEEEccCCCcchhcccCCcccccCCCccEEeee
Q 038658          521 LEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIG  600 (831)
Q Consensus       521 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~  600 (831)
                      |++++|.......                      .......+++|+.|+++++....    .+...+..+++|++|+++
T Consensus       355 L~l~~n~l~~~~~----------------------~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~  408 (606)
T 3t6q_A          355 LDLSHDDIETSDC----------------------CNLQLRNLSHLQSLNLSYNEPLS----LKTEAFKECPQLELLDLA  408 (606)
T ss_dssp             EECCSSCCCEEEE----------------------STTTTTTCTTCCEEECCSCSCEE----ECTTTTTTCTTCSEEECT
T ss_pred             EECCCCccccccC----------------------cchhcccCCCCCEEECCCCcCCc----CCHHHhcCCccCCeEECC
Confidence            7777776433210                      01124457778888887776322    344455777888888887


Q ss_pred             cCCCcccch-hhhhhhHhhhhcccCCccEEEeccCCCCcccccccCCCCCCCeEEEecCCCCcc-ccC---CCCCCCccE
Q 038658          601 WCPTLQSLV-AEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSLLSLSSLREIEIYNCSSFVS-FPE---VALPSKVRS  675 (831)
Q Consensus       601 ~c~~l~~l~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~-l~~---~~~~~~L~~  675 (831)
                      ++ .+.... ...+...       ++|++|++++|......|..+..+++|++|++++|...+. ++.   ...+++|++
T Consensus       409 ~n-~l~~~~~~~~~~~l-------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~  480 (606)
T 3t6q_A          409 FT-RLKVKDAQSPFQNL-------HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI  480 (606)
T ss_dssp             TC-CEECCTTCCTTTTC-------TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCE
T ss_pred             CC-cCCCcccchhhhCc-------ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccE
Confidence            75 443322 1111111       4788888888887777777788888888888888843221 222   122788888


Q ss_pred             EEEecCCCCcccccccccCCCCCcCeEEEccCCCcceeccC--CCCCCCceEEEecCCCCCccccccCccCCcccccCcc
Q 038658          676 ISIHRCDALKSLPEAWMCDANLSLEILTISRCHSLTYIAEV--QLPPSLKNVVIRNCDNVRTLTVEEGIQSSSSRRYTSS  753 (831)
Q Consensus       676 L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~l~~~  753 (831)
                      |++++|...+..|..+..  +++|++|++++|. ++.++..  ...++| .|++++| +++.+. +..+..     +++ 
T Consensus       481 L~Ls~n~l~~~~~~~~~~--l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~-~~~~~~-----l~~-  548 (606)
T 3t6q_A          481 LVLSFCDLSSIDQHAFTS--LKMMNHVDLSHNR-LTSSSIEALSHLKGI-YLNLASN-HISIIL-PSLLPI-----LSQ-  548 (606)
T ss_dssp             EECTTSCCCEECTTTTTT--CTTCCEEECCSSC-CCGGGGGGGTTCCSC-EEECCSS-CCCCCC-GGGHHH-----HHT-
T ss_pred             EECCCCccCccChhhhcc--ccCCCEEECCCCc-cCcCChhHhCccccc-EEECcCC-cccccC-Hhhccc-----CCC-
Confidence            888887655555666665  8888888888874 4433322  344677 8888875 555542 444444     666 


Q ss_pred             ccceEEEecCCCc
Q 038658          754 LLEHLHIESCPSL  766 (831)
Q Consensus       754 ~L~~L~i~~c~~l  766 (831)
                       |++|++++|+-.
T Consensus       549 -L~~L~l~~N~~~  560 (606)
T 3t6q_A          549 -QRTINLRQNPLD  560 (606)
T ss_dssp             -SSEEECTTCCEE
T ss_pred             -CCEEeCCCCCcc
Confidence             999999987644

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=4.2e-34  Score=323.37  Aligned_cols=208  Identities=21%  Similarity=0.173  Sum_probs=137.7

Q ss_pred             cccccccCCcceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCCccc-hhhhccCCccEEeecCcCccccccccccC
Q 038658          183 SILPKLFKLQRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTLP-ESVNKLYNLHTLSLEGCRGLRKLCAGMGN  260 (831)
Q Consensus       183 ~~~~~~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~i~~  260 (831)
                      .+|..++  +.|++|++++|.++.+ |.+|+++++||+|++++|+++.+| .+++++++|++|++++|......|..+++
T Consensus        19 ~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~   96 (549)
T 2z81_A           19 SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP   96 (549)
T ss_dssp             SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTT
T ss_pred             cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhcc
Confidence            4455444  6789999999998877 678899999999999999988775 67899999999999998754444555899


Q ss_pred             cccccccccCCCCCcc-cccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEE
Q 038658          261 LIKLHHLNNSNTDSLE-EMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLR  339 (831)
Q Consensus       261 L~~L~~L~l~~~~~~~-~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~  339 (831)
                      +++|++|++++|...+ ..|..++++++|++|......                    .+..+....+.++++|++|+++
T Consensus        97 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~--------------------~~~~~~~~~~~~l~~L~~L~L~  156 (549)
T 2z81_A           97 LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE--------------------TFSEIRRIDFAGLTSLNELEIK  156 (549)
T ss_dssp             CTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS--------------------SCCEECTTTTTTCCEEEEEEEE
T ss_pred             CCCCcEEECCCCcccccchhhhhhccCCccEEECCCCc--------------------cccccCHhhhhcccccCeeecc
Confidence            9999999999988433 356678888888877322111                    0112222345566677777776


Q ss_pred             eecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCC----CCCCCCCCC
Q 038658          340 WTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTT----LPSVGQLPS  415 (831)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~----~~~l~~l~~  415 (831)
                      +|.....           .+..+..+++|+.|+++++....+|.++.. .+++|+.|++++|.+.+.    .+....+++
T Consensus       157 ~n~l~~~-----------~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~  224 (549)
T 2z81_A          157 ALSLRNY-----------QSQSLKSIRDIHHLTLHLSESAFLLEIFAD-ILSSVRYLELRDTNLARFQFSPLPVDEVSSP  224 (549)
T ss_dssp             ETTCCEE-----------CTTTTTTCSEEEEEEEECSBSTTHHHHHHH-STTTBSEEEEESCBCTTCCCCCCSSCCCCCC
T ss_pred             CCccccc-----------ChhhhhccccCceEecccCcccccchhhHh-hcccccEEEccCCccccccccccchhhhhhc
Confidence            6654321           234455666777777777766665555422 256777777777766542    112334556


Q ss_pred             cceEEeccc
Q 038658          416 LKHLAVRRM  424 (831)
Q Consensus       416 L~~L~L~~~  424 (831)
                      |+.|+++++
T Consensus       225 L~~L~l~~n  233 (549)
T 2z81_A          225 MKKLAFRGS  233 (549)
T ss_dssp             CCEEEEESC
T ss_pred             ccceecccc
Confidence            666666554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2e-32  Score=323.56  Aligned_cols=497  Identities=15%  Similarity=0.092  Sum_probs=295.7

Q ss_pred             CCcceEEEEeCCCCcccc-CccccCCCCCceeecCCCC-CCcc-chhhhccCCccEEeecCcCccccccccccCcccccc
Q 038658          190 KLQRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQ-IRTL-PESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHH  266 (831)
Q Consensus       190 ~l~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~-i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~  266 (831)
                      -.+++++|+|++|.++.+ |.+|+++++|++|+|++|. +..+ |.+++++++|++|+|++|......|..|+++++|++
T Consensus        22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  101 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE  101 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred             CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence            346899999999999987 7889999999999999994 5577 678999999999999998866667889999999999


Q ss_pred             cccCCCCCcccccCC--CCCccccccccceEecCCCCCcchhhhccccccCeeeEccccc-ccccCCCCcceEEEEeecC
Q 038658          267 LNNSNTDSLEEMPLG--IGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLEN-AQLDGKKNLKVLMLRWTNS  343 (831)
Q Consensus       267 L~l~~~~~~~~~p~~--~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~-~~l~~~~~L~~L~l~~~~~  343 (831)
                      |++++|...+.+|..  ++++++|++|+..                     .+.+..+.. ..+.++++|+.|+++.|..
T Consensus       102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls---------------------~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i  160 (844)
T 3j0a_A          102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLS---------------------KNQIRSLYLHPSFGKLNSLKSIDFSSNQI  160 (844)
T ss_dssp             EECTTCCCSSCCSTTCCCSSCSSCCEEEEE---------------------SCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred             eeCcCCCCCcccccCccccccCCCCEEECC---------------------CCcccccccchhHhhCCCCCEEECCCCcC
Confidence            999999866656665  8899999988321                     112222222 4578889999999988765


Q ss_pred             CCCCChhhhhhHHhhhcCCCCC--CCccEEEEeeecCCC-CCccCCCCCCC------ceeEEEEecCCCCCCCC-CC---
Q 038658          344 TDGSSLREAETQKGVLDMLKPH--KNLEQFFISGYGGTK-FPIWLGDSSFS------NLVTLKFEDCGMCTTLP-SV---  410 (831)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~-~p~~~~~~~~~------~L~~L~l~~~~~~~~~~-~l---  410 (831)
                      ...           ....+..+  ++|+.|++++|.... .|..+..  ++      +|+.|++++|.+....+ .+   
T Consensus       161 ~~~-----------~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~--~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~  227 (844)
T 3j0a_A          161 FLV-----------CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK--CMNPFRNMVLEILDVSGNGWTVDITGNFSNA  227 (844)
T ss_dssp             CCC-----------CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCS--SSCTTTTCCBSEEBCSSCCSSTTTTSGGGGT
T ss_pred             Cee-----------CHHHcccccCCccceEECCCCccccccccchhh--cCCccccCceeEEecCCCcCchhHHHHHHhh
Confidence            432           11122222  688888998887654 3333322  22      38899999887766555 22   


Q ss_pred             CCCCCcceEEeccccCceeeCccccCC---CC--CCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcC
Q 038658          411 GQLPSLKHLAVRRMSRVRRLGSEFYGN---DT--PIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSK  485 (831)
Q Consensus       411 ~~l~~L~~L~L~~~~~l~~~~~~~~~~---~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~  485 (831)
                      ...+.++.+.+..+..-..........   ..  ....++|+.|++.+.. +...    .+..+..+++|+.|++++| +
T Consensus       228 l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~-l~~~----~~~~~~~l~~L~~L~L~~n-~  301 (844)
T 3j0a_A          228 ISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF-VFSL----NSRVFETLKDLKVLNLAYN-K  301 (844)
T ss_dssp             SCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCC-CCEE----CSCCSSSCCCCCEEEEESC-C
T ss_pred             cCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCc-cccc----ChhhhhcCCCCCEEECCCC-c
Confidence            233567777776321111000000000   00  0113567777776532 1111    1222556777777777773 5


Q ss_pred             cccCCCC---CCCcccEEEEccccCc---cccCCCCCccceEEEcCCCCccccccccccCCCCceeeccccchhhccCCC
Q 038658          486 LKGTFPE---HLPALEMLVIGGCEEL---LVSITSLPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPL  559 (831)
Q Consensus       486 l~~~~p~---~l~~L~~L~l~~~~~l---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  559 (831)
                      +++..|.   .+++|+.|++++|...   ...+..+++|+.|++++|.....                        .+..
T Consensus       302 i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~------------------------~~~~  357 (844)
T 3j0a_A          302 INKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAII------------------------QDQT  357 (844)
T ss_dssp             CCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCC------------------------CSSC
T ss_pred             CCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCcc------------------------Chhh
Confidence            5433332   4567777777776521   23455667777777777653221                        1112


Q ss_pred             CCCCCCCcEEEEccCCCcchhcccCCcccccCCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEeccCCCCcc
Q 038658          560 KPRLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVK  639 (831)
Q Consensus       560 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~  639 (831)
                      +..+++|+.|+++++.- +.        +..+++|+.|.++++ ++..++.           ...+++.|++++|.....
T Consensus       358 ~~~l~~L~~L~Ls~N~l-~~--------i~~~~~L~~L~l~~N-~l~~l~~-----------~~~~l~~L~ls~N~l~~l  416 (844)
T 3j0a_A          358 FKFLEKLQTLDLRDNAL-TT--------IHFIPSIPDIFLSGN-KLVTLPK-----------INLTANLIHLSENRLENL  416 (844)
T ss_dssp             SCSCCCCCEEEEETCCS-CC--------CSSCCSCSEEEEESC-CCCCCCC-----------CCTTCCEEECCSCCCCSS
T ss_pred             hcCCCCCCEEECCCCCC-Cc--------ccCCCCcchhccCCC-Ccccccc-----------cccccceeecccCccccC
Confidence            34466777777776652 11        123666777777763 4554432           124577777777664331


Q ss_pred             -cccccCCCCCCCeEEEecCCCCccccCCC---CCCCccEEEEecCCCC-----cccccccccCCCCCcCeEEEccCCCc
Q 038658          640 -LPQSLLSLSSLREIEIYNCSSFVSFPEVA---LPSKVRSISIHRCDAL-----KSLPEAWMCDANLSLEILTISRCHSL  710 (831)
Q Consensus       640 -l~~~l~~l~~L~~L~L~~~~~l~~l~~~~---~~~~L~~L~l~~c~~l-----~~l~~~~~~~~l~~L~~L~l~~c~~l  710 (831)
                       .+..+..+++|++|++++| .++.++...   .+++|+.|++++|..-     ...+..+..  +++|+.|++++| .+
T Consensus       417 ~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~--l~~L~~L~Ls~N-~l  492 (844)
T 3j0a_A          417 DILYFLLRVPHLQILILNQN-RFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEG--LSHLQVLYLNHN-YL  492 (844)
T ss_dssp             TTHHHHTTCTTCCEEEEESC-CCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSC--BCCEECCCCCHH-HH
T ss_pred             chhhhhhcCCccceeeCCCC-cccccccccccccCCccccccCCCCccccccccccchhhhcC--cccccEEECCCC-cc
Confidence             1223446677777777776 344333221   1567777777775432     111223333  667777777775 45


Q ss_pred             ceeccC--CCCCCCceEEEecCCCCCccccccCccCCcccccCccccceEEEecCCCcccccchhhhhhhhhccccCCCC
Q 038658          711 TYIAEV--QLPPSLKNVVIRNCDNVRTLTVEEGIQSSSSRRYTSSLLEHLHIESCPSLTCIFSKNELLATLESLEVGNLP  788 (831)
Q Consensus       711 ~~l~~~--~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~l~~~~L~~L~i~~c~~l~~i~~~~~~~~~l~~l~~~~l~  788 (831)
                      +.++..  ..+++|++|+++++ +++.+  +.+..      .++  |+.|+++++. +.. +            +...+ 
T Consensus       493 ~~~~~~~~~~l~~L~~L~Ls~N-~l~~l--~~~~~------~~~--L~~L~Ls~N~-l~~-~------------~~~~~-  546 (844)
T 3j0a_A          493 NSLPPGVFSHLTALRGLSLNSN-RLTVL--SHNDL------PAN--LEILDISRNQ-LLA-P------------NPDVF-  546 (844)
T ss_dssp             TTCCTTSSSSCCSCSEEEEESC-CCSSC--CCCCC------CSC--CCEEEEEEEC-CCC-C------------CSCCC-
T ss_pred             cccChhHccchhhhheeECCCC-CCCcc--Chhhh------hcc--ccEEECCCCc-CCC-C------------ChhHh-
Confidence            555543  23467777777664 56555  22211      123  7777777643 222 1            22223 


Q ss_pred             CCcCeeEEccCCc
Q 038658          789 PSLKSLEVLSCSK  801 (831)
Q Consensus       789 ~~L~~L~l~~~~~  801 (831)
                      ++|+.|+++++|.
T Consensus       547 ~~L~~l~l~~Np~  559 (844)
T 3j0a_A          547 VSLSVLDITHNKF  559 (844)
T ss_dssp             SSCCEEEEEEECC
T ss_pred             CCcCEEEecCCCc
Confidence            5677777776654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.9e-33  Score=320.83  Aligned_cols=431  Identities=17%  Similarity=0.181  Sum_probs=252.8

Q ss_pred             CcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCcccc----------------------------------
Q 038658          162 QHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISEL----------------------------------  207 (831)
Q Consensus       162 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l----------------------------------  207 (831)
                      .+++.|.+.      .+.+.+.+|+.+..+++|++|+|++|.+...                                  
T Consensus        81 ~~V~~L~L~------~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~  154 (636)
T 4eco_A           81 GRVTGLSLE------GFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDP  154 (636)
T ss_dssp             CCEEEEECT------TSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCG
T ss_pred             CCEEEEEec------CcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCc
Confidence            356666443      3456778888888999999999988864211                                  


Q ss_pred             Ccccc-------------------CCCCCceeecC--CCCCCccchhhhccCCccEEeecCcCcccc-------------
Q 038658          208 PDSIG-------------------DLRYLRYLNLS--GTQIRTLPESVNKLYNLHTLSLEGCRGLRK-------------  253 (831)
Q Consensus       208 p~~~~-------------------~l~~Lr~L~L~--~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~-------------  253 (831)
                      |..+.                   ....++.+.+.  +|+++.+|.+++++++|++|++++|...+.             
T Consensus       155 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~  234 (636)
T 4eco_A          155 REDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY  234 (636)
T ss_dssp             GGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHH
T ss_pred             hhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccch
Confidence            11111                   11122222222  456777898999999999999999874443             


Q ss_pred             ----cccccc--CcccccccccCCCCCcccccCCCCCccccccccceEecCCCC-CcchhhhccccccCeeeEccccccc
Q 038658          254 ----LCAGMG--NLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSG-SRLRELKLLTHLRGTLTISKLENAQ  326 (831)
Q Consensus       254 ----lp~~i~--~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~-~~~~~l~~L~~L~~~l~i~~l~~~~  326 (831)
                          +|..++  ++++|++|++++|...+.+|..++++++|++|.........+ .....+.                  
T Consensus       235 ~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~------------------  296 (636)
T 4eco_A          235 AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQ------------------  296 (636)
T ss_dssp             HHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHH------------------
T ss_pred             hcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHH------------------
Confidence                888888  999999999999988888888888888888772211100000 0000000                  


Q ss_pred             ccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCc--cCCCCCCCceeEEEEecCCCC
Q 038658          327 LDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPI--WLGDSSFSNLVTLKFEDCGMC  404 (831)
Q Consensus       327 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~--~~~~~~~~~L~~L~l~~~~~~  404 (831)
                                                     .+..+..+++|+.|++++|.+..+|.  ++..  +++|+.|++++|.+.
T Consensus       297 -------------------------------~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~--l~~L~~L~L~~N~l~  343 (636)
T 4eco_A          297 -------------------------------ALADAPVGEKIQIIYIGYNNLKTFPVETSLQK--MKKLGMLECLYNQLE  343 (636)
T ss_dssp             -------------------------------HHHHSGGGGTCCEEECCSSCCSSCCCHHHHTT--CTTCCEEECCSCCCE
T ss_pred             -------------------------------hhhccccCCCCCEEECCCCcCCccCchhhhcc--CCCCCEEeCcCCcCc
Confidence                                           01112334677778888887777777  6665  788888888888887


Q ss_pred             CCCCCCCCCCCcceEEeccccCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCc-ccEEeEcCC
Q 038658          405 TTLPSVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPK-LRELEVIGC  483 (831)
Q Consensus       405 ~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~-L~~L~l~~c  483 (831)
                      +.+|.++.+++|+.|+++++. +..++..                                   +..+++ |++|++++ 
T Consensus       344 g~ip~~~~l~~L~~L~L~~N~-l~~lp~~-----------------------------------l~~l~~~L~~L~Ls~-  386 (636)
T 4eco_A          344 GKLPAFGSEIKLASLNLAYNQ-ITEIPAN-----------------------------------FCGFTEQVENLSFAH-  386 (636)
T ss_dssp             EECCCCEEEEEESEEECCSSE-EEECCTT-----------------------------------SEEECTTCCEEECCS-
T ss_pred             cchhhhCCCCCCCEEECCCCc-cccccHh-----------------------------------hhhhcccCcEEEccC-
Confidence            677777778888888887753 2232211                                   223444 55555555 


Q ss_pred             cCcccCCCCCCCcccEEEEccccCccccCCCCCccceEEEcCCCCccccccccccCCCCceeeccccchhhccCCCCCCC
Q 038658          484 SKLKGTFPEHLPALEMLVIGGCEELLVSITSLPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRL  563 (831)
Q Consensus       484 ~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  563 (831)
                      +.++ .+|..+..                ..+++|+.|++++|........  ..+.               .......+
T Consensus       387 N~l~-~lp~~~~~----------------~~l~~L~~L~Ls~N~l~~~~p~--~l~~---------------~~~~~~~~  432 (636)
T 4eco_A          387 NKLK-YIPNIFDA----------------KSVSVMSAIDFSYNEIGSVDGK--NFDP---------------LDPTPFKG  432 (636)
T ss_dssp             SCCS-SCCSCCCT----------------TCSSCEEEEECCSSCTTTTTTC--SSCT---------------TCSSCCCC
T ss_pred             CcCc-ccchhhhh----------------cccCccCEEECcCCcCCCcchh--hhcc---------------cccccccC
Confidence            2344 44432110                0011233333333321110000  0000               00000012


Q ss_pred             CCCcEEEEccCCCcchhcccCCcccccCCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEeccCCCCcccccc
Q 038658          564 PKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQS  643 (831)
Q Consensus       564 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~  643 (831)
                      ++|+.|+++++.--    ..+...+..+++|++|+++++ .+..++...+........-.++|++|++++|... .+|..
T Consensus       433 ~~L~~L~Ls~N~l~----~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~  506 (636)
T 4eco_A          433 INVSSINLSNNQIS----KFPKELFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDD  506 (636)
T ss_dssp             CCEEEEECCSSCCC----SCCTHHHHTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGG
T ss_pred             CCCCEEECcCCccC----cCCHHHHccCCCCCEEECCCC-CCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChh
Confidence            34444444444311    133444445666666666663 4445543322211000000026888888888755 67777


Q ss_pred             cC--CCCCCCeEEEecCCCCccccCCCC-CCCccEEEEe------cCCCCcccccccccCCCCCcCeEEEccCCCcceec
Q 038658          644 LL--SLSSLREIEIYNCSSFVSFPEVAL-PSKVRSISIH------RCDALKSLPEAWMCDANLSLEILTISRCHSLTYIA  714 (831)
Q Consensus       644 l~--~l~~L~~L~L~~~~~l~~l~~~~~-~~~L~~L~l~------~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~  714 (831)
                      +.  .+++|++|+|++| .++.+|.... +++|++|+++      +|...+.+|..+..  +++|++|++++|. ++.+|
T Consensus       507 ~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~--l~~L~~L~Ls~N~-l~~ip  582 (636)
T 4eco_A          507 FRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL--CPSLTQLQIGSND-IRKVN  582 (636)
T ss_dssp             GSTTTCTTCCEEECCSS-CCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGG--CSSCCEEECCSSC-CCBCC
T ss_pred             hhhccCCCcCEEECCCC-CCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhc--CCCCCEEECCCCc-CCccC
Confidence            76  7888888888888 4555765433 7888888884      45556778888877  9999999999975 58888


Q ss_pred             cCCCCCCCceEEEecCC
Q 038658          715 EVQLPPSLKNVVIRNCD  731 (831)
Q Consensus       715 ~~~~~~~L~~L~l~~c~  731 (831)
                      .. +.++|++|++++|+
T Consensus       583 ~~-~~~~L~~L~Ls~N~  598 (636)
T 4eco_A          583 EK-ITPNISVLDIKDNP  598 (636)
T ss_dssp             SC-CCTTCCEEECCSCT
T ss_pred             Hh-HhCcCCEEECcCCC
Confidence            65 44799999999874

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=5.5e-33  Score=314.24  Aligned_cols=461  Identities=17%  Similarity=0.134  Sum_probs=284.5

Q ss_pred             CcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCCccchh-hhccCC
Q 038658          162 QHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTLPES-VNKLYN  239 (831)
Q Consensus       162 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~  239 (831)
                      ++|++|.+.+      +.+....|..+..+++|++|++++|.++.+ |.+|+.+++|++|++++|.++.+|.. ++++++
T Consensus        26 ~~L~~L~Ls~------n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~   99 (549)
T 2z81_A           26 AAMKSLDLSF------NKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS   99 (549)
T ss_dssp             TTCCEEECCS------SCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTT
T ss_pred             CCccEEECcC------CccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCC
Confidence            5778875433      344444455667899999999999998887 47789999999999999999988754 899999


Q ss_pred             ccEEeecCcCccc-cccccccCcccccccccCCCCCccccc-CCCCCccccccccceEecCCCCCcchhhhccccccCee
Q 038658          240 LHTLSLEGCRGLR-KLCAGMGNLIKLHHLNNSNTDSLEEMP-LGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTL  317 (831)
Q Consensus       240 L~~L~l~~~~~~~-~lp~~i~~L~~L~~L~l~~~~~~~~~p-~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l  317 (831)
                      |++|++++|.... ..|..++++++|++|++++|...+.+| ..++++++|++|....                     +
T Consensus       100 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~---------------------n  158 (549)
T 2z81_A          100 LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA---------------------L  158 (549)
T ss_dssp             CCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE---------------------T
T ss_pred             CcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccC---------------------C
Confidence            9999999986443 356778999999999999998677776 4688888888883221                     1


Q ss_pred             eEcccccccccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCC---CccCCCCCCCcee
Q 038658          318 TISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKF---PIWLGDSSFSNLV  394 (831)
Q Consensus       318 ~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~---p~~~~~~~~~~L~  394 (831)
                      .+.......+..+++|+.|+++++.....   .     .   ..+..+++|+.|++++|....+   |.++.. .+++|+
T Consensus       159 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~---~-----~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~~~~L~  226 (549)
T 2z81_A          159 SLRNYQSQSLKSIRDIHHLTLHLSESAFL---L-----E---IFADILSSVRYLELRDTNLARFQFSPLPVDE-VSSPMK  226 (549)
T ss_dssp             TCCEECTTTTTTCSEEEEEEEECSBSTTH---H-----H---HHHHSTTTBSEEEEESCBCTTCCCCCCSSCC-CCCCCC
T ss_pred             cccccChhhhhccccCceEecccCccccc---c-----h---hhHhhcccccEEEccCCccccccccccchhh-hhhccc
Confidence            12222334566677888888877654211   0     0   0123467889999998887765   223322 367899


Q ss_pred             EEEEecCCCCCCCC-----CCCCCCCcceEEeccccCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCC
Q 038658          395 TLKFEDCGMCTTLP-----SVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGV  469 (831)
Q Consensus       395 ~L~l~~~~~~~~~~-----~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~  469 (831)
                      .|++++|.+.+..+     .+..+++|+.+++++|..................+++|+.|.+.++...........+...
T Consensus       227 ~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~  306 (549)
T 2z81_A          227 KLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVY  306 (549)
T ss_dssp             EEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHH
T ss_pred             ceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhh
Confidence            99998887653222     3456778888988887522211000000011234677777777664321111100100001


Q ss_pred             CCCCcccEEeEcCCcCcccCCCC----CCCcccEEEEccccCcc------ccCCCCCccceEEEcCCCCccccccccccC
Q 038658          470 EGFPKLRELEVIGCSKLKGTFPE----HLPALEMLVIGGCEELL------VSITSLPALSKLEIGGCKKVVWRSETDHLG  539 (831)
Q Consensus       470 ~~~~~L~~L~l~~c~~l~~~~p~----~l~~L~~L~l~~~~~l~------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  539 (831)
                      ..+++|++|++++| +++ .+|.    .+++|+.|++++|....      ..+..+++|+.|++++|.......      
T Consensus       307 ~~~~~L~~L~l~~n-~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------  378 (549)
T 2z81_A          307 SLLEKVKRITVENS-KVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK------  378 (549)
T ss_dssp             HHSTTCCEEEEESS-CCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHH------
T ss_pred             hhcccceEEEeccC-ccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccccccc------
Confidence            12467888888884 565 6664    46778888887776432      124567777777777776432110      


Q ss_pred             CCCceeeccccchhhccCCCCCCCCCCcEEEEccCCCcchhcccCCcccccCCCccEEeeecCCCcccchhhhhhhHhhh
Q 038658          540 SQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQL  619 (831)
Q Consensus       540 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l  619 (831)
                                      .+..+..+++|+.|++++|. ++.   .|.. +..+++|++|+++++ .+..++.         
T Consensus       379 ----------------~~~~~~~l~~L~~L~Ls~N~-l~~---lp~~-~~~~~~L~~L~Ls~N-~l~~l~~---------  427 (549)
T 2z81_A          379 ----------------TGEILLTLKNLTSLDISRNT-FHP---MPDS-CQWPEKMRFLNLSST-GIRVVKT---------  427 (549)
T ss_dssp             ----------------HHHHGGGCTTCCEEECTTCC-CCC---CCSC-CCCCTTCCEEECTTS-CCSCCCT---------
T ss_pred             ----------------chhhhhcCCCCCEEECCCCC-Ccc---CChh-hcccccccEEECCCC-Ccccccc---------
Confidence                            00012346777777777764 222   3332 355667777777764 4554432         


Q ss_pred             hcccCCccEEEeccCCCCcccccccCCCCCCCeEEEecCCCCccccCCCCCCCccEEEEecCCCCcccccccccCCCCCc
Q 038658          620 CELSCRLEYLLLNDCKGLVKLPQSLLSLSSLREIEIYNCSSFVSFPEVALPSKVRSISIHRCDALKSLPEAWMCDANLSL  699 (831)
Q Consensus       620 ~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L  699 (831)
                       ..|++|++|++++|...+ +   ...+++|++|++++| .++.+|....+++|++|++++|...+..|..+..  +++|
T Consensus       428 -~~~~~L~~L~Ls~N~l~~-~---~~~l~~L~~L~Ls~N-~l~~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--l~~L  499 (549)
T 2z81_A          428 -CIPQTLEVLDVSNNNLDS-F---SLFLPRLQELYISRN-KLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDR--LTSL  499 (549)
T ss_dssp             -TSCTTCSEEECCSSCCSC-C---CCCCTTCCEEECCSS-CCSSCCCGGGCTTCCEEECCSSCCCCCCTTGGGG--CTTC
T ss_pred             -hhcCCceEEECCCCChhh-h---cccCChhcEEECCCC-ccCcCCCcccCccCCEEecCCCccCCcCHHHHhc--Cccc
Confidence             223467777777765433 2   245667777777776 5566666555667777777765433333333444  6666


Q ss_pred             CeEEEccCC
Q 038658          700 EILTISRCH  708 (831)
Q Consensus       700 ~~L~l~~c~  708 (831)
                      +.|++++|+
T Consensus       500 ~~L~l~~N~  508 (549)
T 2z81_A          500 QKIWLHTNP  508 (549)
T ss_dssp             CEEECCSSC
T ss_pred             CEEEecCCC
Confidence            666666665

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=3.6e-32  Score=321.37  Aligned_cols=494  Identities=15%  Similarity=0.100  Sum_probs=252.8

Q ss_pred             cCCCeeEEEEEccccCccccccccccCCcceEEccccccCCCcccccccc-cccccCCcceEEEEeCCCCcccc-Ccccc
Q 038658          135 FSKNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAHSI-LPKLFKLQRLRVFSLCGYWISEL-PDSIG  212 (831)
Q Consensus       135 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~-~~~~~~l~~L~~L~L~~~~i~~l-p~~~~  212 (831)
                      .+..++++.+..+.+..+. ...+.++++|++|.+..      +.....+ |..+.++++|++|+|++|.+..+ |..|+
T Consensus        22 lp~~l~~LdLs~N~i~~i~-~~~~~~l~~L~~LdLs~------n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~   94 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVT-ASSFPFLEQLQLLELGS------QYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ   94 (844)
T ss_dssp             SCTTCCEEEEESCCCCEEC-SSSCSSCCSCSEEEECT------TCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSC
T ss_pred             CCCCcCEEECCCCcCCccC-hhHCcccccCeEEeCCC------CCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHcc
Confidence            5566777777766544322 24566677777775433      2223444 33344777777777777777665 66777


Q ss_pred             CCCCCceeecCCCCCCc-cchh--hhccCCccEEeecCcCcccccc-ccccCcccccccccCCCCCcccccCCCCCc--c
Q 038658          213 DLRYLRYLNLSGTQIRT-LPES--VNKLYNLHTLSLEGCRGLRKLC-AGMGNLIKLHHLNNSNTDSLEEMPLGIGKL--T  286 (831)
Q Consensus       213 ~l~~Lr~L~L~~~~i~~-lp~~--i~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L--~  286 (831)
                      ++++|++|+|++|.+.. +|..  ++++++|++|++++|......| ..++++++|++|++++|.+.+..|..++.+  +
T Consensus        95 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~  174 (844)
T 3j0a_A           95 GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK  174 (844)
T ss_dssp             SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHC
T ss_pred             CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCC
Confidence            77777777777777764 4443  6777777777777765443332 457777777777777776555555556555  5


Q ss_pred             ccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCC------CcceEEEEeecCCCCCChhhh--------
Q 038658          287 CLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKK------NLKVLMLRWTNSTDGSSLREA--------  352 (831)
Q Consensus       287 ~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~------~L~~L~l~~~~~~~~~~~~~~--------  352 (831)
                      +|+.|.......                     .......+..+.      .|+.|+++.|...........        
T Consensus       175 ~L~~L~L~~n~l---------------------~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l  233 (844)
T 3j0a_A          175 TLSFFSLAANSL---------------------YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQA  233 (844)
T ss_dssp             SSCCCEECCSBS---------------------CCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCB
T ss_pred             ccceEECCCCcc---------------------ccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccc
Confidence            566552211110                     000001111111      255555544432111000000        


Q ss_pred             -----------------hhHHhhhcCCCC--CCCccEEEEeeecCCCCC-ccCCCCCCCceeEEEEecCCCCCCCC-CCC
Q 038658          353 -----------------ETQKGVLDMLKP--HKNLEQFFISGYGGTKFP-IWLGDSSFSNLVTLKFEDCGMCTTLP-SVG  411 (831)
Q Consensus       353 -----------------~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~p-~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~  411 (831)
                                       .........+..  .++|+.|++++|.+..++ ..+.  .+++|+.|++++|.+.+..+ .+.
T Consensus       234 ~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~  311 (844)
T 3j0a_A          234 FSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE--TLKDLKVLNLAYNKINKIADEAFY  311 (844)
T ss_dssp             SEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSS--SCCCCCEEEEESCCCCEECTTTTT
T ss_pred             cceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhh--cCCCCCEEECCCCcCCCCChHHhc
Confidence                             000000111111  245666666665554432 2232  25566666666666554444 455


Q ss_pred             CCCCcceEEeccccCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCC
Q 038658          412 QLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFP  491 (831)
Q Consensus       412 ~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p  491 (831)
                      .+++|+.|+++++. +..+....     ...+++|+.|++.+. .+...    .+..+..+++|++|++++ +.++ .++
T Consensus       312 ~l~~L~~L~Ls~N~-l~~~~~~~-----~~~l~~L~~L~L~~N-~i~~~----~~~~~~~l~~L~~L~Ls~-N~l~-~i~  378 (844)
T 3j0a_A          312 GLDNLQVLNLSYNL-LGELYSSN-----FYGLPKVAYIDLQKN-HIAII----QDQTFKFLEKLQTLDLRD-NALT-TIH  378 (844)
T ss_dssp             TCSSCCEEEEESCC-CSCCCSCS-----CSSCTTCCEEECCSC-CCCCC----CSSCSCSCCCCCEEEEET-CCSC-CCS
T ss_pred             CCCCCCEEECCCCC-CCccCHHH-----hcCCCCCCEEECCCC-CCCcc----ChhhhcCCCCCCEEECCC-CCCC-ccc
Confidence            56666666665543 22221111     122555555555543 11111    111234455666666655 2444 333


Q ss_pred             CCCCcccEEEEccccCccccCCCCCccceEEEcCCCCccccccccccCCCCceeeccccchhhccCCCCCCCCCCcEEEE
Q 038658          492 EHLPALEMLVIGGCEELLVSITSLPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEI  571 (831)
Q Consensus       492 ~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l  571 (831)
                      . +++|+.|++++|.... .-....+++.|++++|........                       .....+++|+.|++
T Consensus       379 ~-~~~L~~L~l~~N~l~~-l~~~~~~l~~L~ls~N~l~~l~~~-----------------------~~~~~l~~L~~L~L  433 (844)
T 3j0a_A          379 F-IPSIPDIFLSGNKLVT-LPKINLTANLIHLSENRLENLDIL-----------------------YFLLRVPHLQILIL  433 (844)
T ss_dssp             S-CCSCSEEEEESCCCCC-CCCCCTTCCEEECCSCCCCSSTTH-----------------------HHHTTCTTCCEEEE
T ss_pred             C-CCCcchhccCCCCccc-ccccccccceeecccCccccCchh-----------------------hhhhcCCccceeeC
Confidence            2 5555555555554221 111134455555555542211000                       00124677777777


Q ss_pred             ccCCCcchhcccCCcccccCCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEeccCCCCcccccccCCCCCCC
Q 038658          572 SNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSLLSLSSLR  651 (831)
Q Consensus       572 ~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~  651 (831)
                      +++.....   .+......+++|+.|+++++ .+...+..... ...+..+ ++|++|++++|...+..|..+..+++|+
T Consensus       434 s~N~l~~~---~~~~~~~~~~~L~~L~Ls~N-~l~~~~~~~~~-~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  507 (844)
T 3j0a_A          434 NQNRFSSC---SGDQTPSENPSLEQLFLGEN-MLQLAWETELC-WDVFEGL-SHLQVLYLNHNYLNSLPPGVFSHLTALR  507 (844)
T ss_dssp             ESCCCCCC---CSSSSSCSCTTCCBCEEESC-CCSSSCCSCCC-SSCSSCB-CCEECCCCCHHHHTTCCTTSSSSCCSCS
T ss_pred             CCCccccc---ccccccccCCccccccCCCC-ccccccccccc-hhhhcCc-ccccEEECCCCcccccChhHccchhhhh
Confidence            77663221   12223345677777777773 44322211000 0001112 4677777777776555556677777788


Q ss_pred             eEEEecCCCCccccCCCCCCCccEEEEecCCCCcccccccccCCCCCcCeEEEccCC
Q 038658          652 EIEIYNCSSFVSFPEVALPSKVRSISIHRCDALKSLPEAWMCDANLSLEILTISRCH  708 (831)
Q Consensus       652 ~L~L~~~~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~  708 (831)
                      +|+|++| .++.++...+.++|+.|++++|...+..|..     +++|+.|++++++
T Consensus       508 ~L~Ls~N-~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~-----~~~L~~l~l~~Np  558 (844)
T 3j0a_A          508 GLSLNSN-RLTVLSHNDLPANLEILDISRNQLLAPNPDV-----FVSLSVLDITHNK  558 (844)
T ss_dssp             EEEEESC-CCSSCCCCCCCSCCCEEEEEEECCCCCCSCC-----CSSCCEEEEEEEC
T ss_pred             eeECCCC-CCCccChhhhhccccEEECCCCcCCCCChhH-----hCCcCEEEecCCC
Confidence            8888777 6666766666677777887776544444422     4567777777654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2e-32  Score=316.28  Aligned_cols=371  Identities=17%  Similarity=0.146  Sum_probs=216.8

Q ss_pred             CCCCccchhhhccCCccEEeecCcCccc-----------------ccccccc--CcccccccccCCCCCcccccCCCCCc
Q 038658          225 TQIRTLPESVNKLYNLHTLSLEGCRGLR-----------------KLCAGMG--NLIKLHHLNNSNTDSLEEMPLGIGKL  285 (831)
Q Consensus       225 ~~i~~lp~~i~~L~~L~~L~l~~~~~~~-----------------~lp~~i~--~L~~L~~L~l~~~~~~~~~p~~~~~L  285 (831)
                      |+++.+|.+++++++|++|+|++|...+                 .+|..++  ++++|++|++++|...+.+|..++++
T Consensus       435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L  514 (876)
T 4ecn_A          435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL  514 (876)
T ss_dssp             CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred             CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence            5566689999999999999999987555                 2888887  99999999999998888889888888


Q ss_pred             cccccccceEecCCCC-CcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCC
Q 038658          286 TCLQTLCNFVVGKDSG-SRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKP  364 (831)
Q Consensus       286 ~~L~~L~~~~~~~~~~-~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~  364 (831)
                      ++|+.|.........+ .....+..+                                                ...+..
T Consensus       515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L------------------------------------------------~~~~~~  546 (876)
T 4ecn_A          515 PELQSLNIACNRGISAAQLKADWTRL------------------------------------------------ADDEDT  546 (876)
T ss_dssp             SSCCEEECTTCTTSCHHHHHHHHHHH------------------------------------------------HHCTTT
T ss_pred             CCCCEEECcCCCCcccccchHHHHhh------------------------------------------------hhcccc
Confidence            8888772211100000 000001000                                                013445


Q ss_pred             CCCccEEEEeeecCCCCCc--cCCCCCCCceeEEEEecCCCCCCCCCCCCCCCcceEEeccccCceeeCccccCCCCCCC
Q 038658          365 HKNLEQFFISGYGGTKFPI--WLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIP  442 (831)
Q Consensus       365 ~~~L~~L~l~~~~~~~~p~--~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~  442 (831)
                      +++|+.|++++|.+..+|.  ++..  +++|+.|++++|.+. .+|.++.+++|+.|+++++.. ..++.          
T Consensus       547 l~~L~~L~Ls~N~L~~ip~~~~l~~--L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l-~~lp~----------  612 (876)
T 4ecn_A          547 GPKIQIFYMGYNNLEEFPASASLQK--MVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQI-EEIPE----------  612 (876)
T ss_dssp             TTTCCEEECCSSCCCBCCCHHHHTT--CTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCC-SCCCT----------
T ss_pred             cCCccEEEeeCCcCCccCChhhhhc--CCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCcc-ccchH----------
Confidence            5677777777777777777  6654  777888888877776 666777777777777776532 12211          


Q ss_pred             CCCcceeeccccccccccccCCCCCCCCCCCc-ccEEeEcCCcCcccCCCCCCCcccEEEEccccCccccCCCCCccceE
Q 038658          443 FPCLETLRFENLLEWEDWIPHGSTQGVEGFPK-LRELEVIGCSKLKGTFPEHLPALEMLVIGGCEELLVSITSLPALSKL  521 (831)
Q Consensus       443 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~-L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L  521 (831)
                                               .+..+++ |+.|++++| .++ .+|..+..                ...++|+.|
T Consensus       613 -------------------------~l~~l~~~L~~L~Ls~N-~L~-~lp~~~~~----------------~~~~~L~~L  649 (876)
T 4ecn_A          613 -------------------------DFCAFTDQVEGLGFSHN-KLK-YIPNIFNA----------------KSVYVMGSV  649 (876)
T ss_dssp             -------------------------TSCEECTTCCEEECCSS-CCC-SCCSCCCT----------------TCSSCEEEE
T ss_pred             -------------------------HHhhccccCCEEECcCC-CCC-cCchhhhc----------------cccCCCCEE
Confidence                                     1233455 666666553 344 44432110                001123333


Q ss_pred             EEcCCCCccccccccccCCCCceeeccccchhhccCCCCCCCCCCcEEEEccCCCcchhcccCCcccccCCCccEEeeec
Q 038658          522 EIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGW  601 (831)
Q Consensus       522 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~  601 (831)
                      ++++|.........                   .........++|+.|++++|...    ..+...+..+++|+.|++++
T Consensus       650 ~Ls~N~l~g~ip~l-------------------~~~l~~~~~~~L~~L~Ls~N~L~----~lp~~~~~~l~~L~~L~Ls~  706 (876)
T 4ecn_A          650 DFSYNKIGSEGRNI-------------------SCSMDDYKGINASTVTLSYNEIQ----KFPTELFATGSPISTIILSN  706 (876)
T ss_dssp             ECCSSCTTTTSSSC-------------------SSCTTTCCCCCEEEEECCSSCCC----SCCHHHHHTTCCCSEEECCS
T ss_pred             ECcCCcCCCccccc-------------------hhhhccccCCCcCEEEccCCcCC----ccCHHHHccCCCCCEEECCC
Confidence            33333211100000                   00000001224444444444311    13333344556666666665


Q ss_pred             CCCcccchhhhhhhHhh-hhcccCCccEEEeccCCCCcccccccC--CCCCCCeEEEecCCCCccccCCCC-CCCccEEE
Q 038658          602 CPTLQSLVAEEEKDQQQ-LCELSCRLEYLLLNDCKGLVKLPQSLL--SLSSLREIEIYNCSSFVSFPEVAL-PSKVRSIS  677 (831)
Q Consensus       602 c~~l~~l~~~~~~~~~~-l~~~~~~L~~L~l~~~~~~~~l~~~l~--~l~~L~~L~L~~~~~l~~l~~~~~-~~~L~~L~  677 (831)
                      + .+..++...+..... ...+ ++|+.|++++|... .+|..+.  .+++|+.|+|++| .++.+|.... +++|+.|+
T Consensus       707 N-~L~~ip~~~~~~~~~~l~nl-~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~  782 (876)
T 4ecn_A          707 N-LMTSIPENSLKPKDGNYKNT-YLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFG  782 (876)
T ss_dssp             C-CCSCCCTTSSSCTTSCCTTG-GGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEE
T ss_pred             C-cCCccChHHhcccccccccc-CCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEE
Confidence            3 455554332221100 0000 26778888887644 6777766  7788888888887 4555664333 77888888


Q ss_pred             Eec------CCCCcccccccccCCCCCcCeEEEccCCCcceeccCCCCCCCceEEEecCC
Q 038658          678 IHR------CDALKSLPEAWMCDANLSLEILTISRCHSLTYIAEVQLPPSLKNVVIRNCD  731 (831)
Q Consensus       678 l~~------c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~  731 (831)
                      +++      |...+.+|..+..  +++|+.|++++|. ++.+|.. +.++|+.|++++|+
T Consensus       783 Ls~N~~ls~N~l~~~ip~~l~~--L~~L~~L~Ls~N~-L~~Ip~~-l~~~L~~LdLs~N~  838 (876)
T 4ecn_A          783 IRHQRDAEGNRILRQWPTGITT--CPSLIQLQIGSND-IRKVDEK-LTPQLYILDIADNP  838 (876)
T ss_dssp             CCCCBCTTCCBCCCCCCTTGGG--CSSCCEEECCSSC-CCBCCSC-CCSSSCEEECCSCT
T ss_pred             CCCCCCcccccccccChHHHhc--CCCCCEEECCCCC-CCccCHh-hcCCCCEEECCCCC
Confidence            865      5556677877777  8999999999975 4888865 45789999998875

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.98  E-value=2.5e-31  Score=302.43  Aligned_cols=478  Identities=16%  Similarity=0.119  Sum_probs=214.5

Q ss_pred             CCCeeEEEEEccccCccccccccccCCcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCccccC-ccccCC
Q 038658          136 SKNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELP-DSIGDL  214 (831)
Q Consensus       136 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp-~~~~~l  214 (831)
                      +..++++.+..+....+. ...+.++++|++|.+.+      +.+....+..+.++++|++|++++|.++.+| ..|+.+
T Consensus        27 ~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~------n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l   99 (570)
T 2z63_A           27 PFSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSR------CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL   99 (570)
T ss_dssp             CSSCCEEECCSCCCCEEC-TTTTTTCSSCCEEECTT------CCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred             cccccEEEccCCccCccC-hhHhhCCCCceEEECCC------CcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCc
Confidence            344555555554433221 12445555566554332      2222222222335566666666666655553 455566


Q ss_pred             CCCceeecCCCCCCccch-hhhccCCccEEeecCcCccc-cccccccCcccccccccCCCCCcccccCCCCCcccccccc
Q 038658          215 RYLRYLNLSGTQIRTLPE-SVNKLYNLHTLSLEGCRGLR-KLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLC  292 (831)
Q Consensus       215 ~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~  292 (831)
                      ++|++|++++|.++.+|. .++++++|++|++++|.... .+|..++++++|++|++++|......|..++.+++|+.+.
T Consensus       100 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~  179 (570)
T 2z63_A          100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN  179 (570)
T ss_dssp             TTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCC
T ss_pred             cccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhh
Confidence            666666666666655543 45566666666666554332 2455566666666666666553333333444444442110


Q ss_pred             -ceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEE
Q 038658          293 -NFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQF  371 (831)
Q Consensus       293 -~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L  371 (831)
                       ...                 +. ...+..+....+... +|+.|++++|.....          .....+..+++++..
T Consensus       180 ~~L~-----------------l~-~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~----------~~~~~~~~l~~l~~~  230 (570)
T 2z63_A          180 LSLD-----------------LS-LNPMNFIQPGAFKEI-RLHKLTLRNNFDSLN----------VMKTCIQGLAGLEVH  230 (570)
T ss_dssp             CEEE-----------------CT-TCCCCEECTTTTTTC-EEEEEEEESCCSCTT----------HHHHHHHTTTTCEEE
T ss_pred             hhcc-----------------cC-CCCceecCHHHhccC-cceeEeccccccccc----------chhhhhcCcccccee
Confidence             000                 00 112222333334333 677777766532111          011122334445444


Q ss_pred             EEeeecCC------CCCccCCCCCC--CceeEEEEecC-CCCCCCC-CCCCCCCcceEEeccccCceeeCccccCCCCCC
Q 038658          372 FISGYGGT------KFPIWLGDSSF--SNLVTLKFEDC-GMCTTLP-SVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPI  441 (831)
Q Consensus       372 ~l~~~~~~------~~p~~~~~~~~--~~L~~L~l~~~-~~~~~~~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~  441 (831)
                      .+......      .++.+... .+  -.++.+++.++ .+.+..+ .+..+++|+.|+++++. +..++..+      .
T Consensus       231 ~l~~~~~~~~~~l~~~~~~~~~-~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~l~~~~------~  302 (570)
T 2z63_A          231 RLVLGEFRNEGNLEKFDKSALE-GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IERVKDFS------Y  302 (570)
T ss_dssp             EEEEEECCCCSSCEECCTTTTG-GGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCE-ECSCCBCC------S
T ss_pred             eeccccccCchhhhhcchhhhc-cccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCcc-chhhhhhh------c
Confidence            44322211      11111110 01  13566667666 3344444 56777888888887753 22222111      1


Q ss_pred             CCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCC-CCCCcccEEEEccccCc-----cccCCCC
Q 038658          442 PFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFP-EHLPALEMLVIGGCEEL-----LVSITSL  515 (831)
Q Consensus       442 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p-~~l~~L~~L~l~~~~~l-----~~~~~~l  515 (831)
                      .+ +|+.|.+.++.-.      ..+  ...+++|++|++++|. +.+.++ ..+++|+.|++++|...     ...+..+
T Consensus       303 ~~-~L~~L~l~~n~~~------~l~--~~~l~~L~~L~l~~n~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  372 (570)
T 2z63_A          303 NF-GWQHLELVNCKFG------QFP--TLKLKSLKRLTFTSNK-GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT  372 (570)
T ss_dssp             CC-CCSEEEEESCBCS------SCC--BCBCSSCCEEEEESCB-SCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTC
T ss_pred             cC-CccEEeeccCccc------ccC--cccccccCEEeCcCCc-cccccccccCCCCCEEeCcCCccCcccccccccccc
Confidence            12 4444444442110      011  1234555555555532 222222 23444444444444311     1122334


Q ss_pred             CccceEEEcCCCCccccccccccCCCCceeeccccchhhccCCCCCCCCCCcEEEEccCCCcchhcccCCcccccCCCcc
Q 038658          516 PALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQDISSLK  595 (831)
Q Consensus       516 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~  595 (831)
                                                                      ++|++|+++++....    .+.. +..+++|+
T Consensus       373 ------------------------------------------------~~L~~L~l~~n~l~~----~~~~-~~~l~~L~  399 (570)
T 2z63_A          373 ------------------------------------------------TSLKYLDLSFNGVIT----MSSN-FLGLEQLE  399 (570)
T ss_dssp             ------------------------------------------------SCCCEEECCSCSEEE----EEEE-EETCTTCC
T ss_pred             ------------------------------------------------CccCEEECCCCcccc----cccc-ccccCCCC
Confidence                                                            444555554443111    1222 34455555


Q ss_pred             EEeeecCCCcccchh-hhhhhHhhhhcccCCccEEEeccCCCCcccccccCCCCCCCeEEEecCCCC-ccccCCC-CCCC
Q 038658          596 RLTIGWCPTLQSLVA-EEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSLLSLSSLREIEIYNCSSF-VSFPEVA-LPSK  672 (831)
Q Consensus       596 ~L~l~~c~~l~~l~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l-~~l~~~~-~~~~  672 (831)
                      +|+++++ .+...+. ..+..      + ++|++|++++|...+..|..+..+++|++|++++|... ..+|... .+++
T Consensus       400 ~L~l~~n-~l~~~~~~~~~~~------l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~  471 (570)
T 2z63_A          400 HLDFQHS-NLKQMSEFSVFLS------L-RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN  471 (570)
T ss_dssp             EEECTTS-EEESCTTSCTTTT------C-TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred             EEEccCC-ccccccchhhhhc------C-CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccC
Confidence            5555553 2222211 11111      1 34566666666555555555555666666666665322 1333221 2556


Q ss_pred             ccEEEEecCCCCcccccccccCCCCCcCeEEEccCCCcceeccC--CCCCCCceEEEecCC
Q 038658          673 VRSISIHRCDALKSLPEAWMCDANLSLEILTISRCHSLTYIAEV--QLPPSLKNVVIRNCD  731 (831)
Q Consensus       673 L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~c~  731 (831)
                      |++|++++|...+..|..+..  +++|++|++++| .++.++..  ..+++|++|++++++
T Consensus       472 L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          472 LTFLDLSQCQLEQLSPTAFNS--LSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             CCEEECTTSCCCEECTTTTTT--CTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEEECCCCccccCChhhhhc--ccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence            666666665433333444444  566666666665 34444432  233566666666543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.98  E-value=2.3e-31  Score=302.68  Aligned_cols=482  Identities=17%  Similarity=0.126  Sum_probs=323.2

Q ss_pred             cccccccCCcceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCCccc-hhhhccCCccEEeecCcCccccccccccC
Q 038658          183 SILPKLFKLQRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTLP-ESVNKLYNLHTLSLEGCRGLRKLCAGMGN  260 (831)
Q Consensus       183 ~~~~~~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~i~~  260 (831)
                      .+|..+.  +.+++|++++|.++.+ +.+|..+++|++|++++|.++.+| ..++++++|++|++++|......|..|++
T Consensus        21 ~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~   98 (570)
T 2z63_A           21 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG   98 (570)
T ss_dssp             SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred             ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcC
Confidence            3454443  4799999999999988 568999999999999999999885 57899999999999998755545578999


Q ss_pred             cccccccccCCCCCcccccC-CCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccc-cccccCCCCcceEEE
Q 038658          261 LIKLHHLNNSNTDSLEEMPL-GIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLE-NAQLDGKKNLKVLML  338 (831)
Q Consensus       261 L~~L~~L~l~~~~~~~~~p~-~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~-~~~l~~~~~L~~L~l  338 (831)
                      +++|++|++++|. +..+|. .++++++|++|..                    . ...+..+. ...+.++++|++|++
T Consensus        99 l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L--------------------~-~n~l~~~~lp~~~~~l~~L~~L~l  156 (570)
T 2z63_A           99 LSSLQKLVAVETN-LASLENFPIGHLKTLKELNV--------------------A-HNLIQSFKLPEYFSNLTNLEHLDL  156 (570)
T ss_dssp             CTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEEC--------------------C-SSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred             ccccccccccccc-cccCCCccccccccccEEec--------------------C-CCccceecChhhhcccCCCCEEeC
Confidence            9999999999998 666654 5889999998832                    1 11222222 345778899999999


Q ss_pred             EeecCCCCCChhhhhhHHhhhcCCCCCCCc----cEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCC-CCC-CCCC
Q 038658          339 RWTNSTDGSSLREAETQKGVLDMLKPHKNL----EQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCT-TLP-SVGQ  412 (831)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L----~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~-~~~-~l~~  412 (831)
                      ++|.....           ....+..+.+|    +.+++++|....++.....  ..+|+.|++++|.... .++ .+..
T Consensus       157 ~~n~l~~~-----------~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~  223 (570)
T 2z63_A          157 SSNKIQSI-----------YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK--EIRLHKLTLRNNFDSLNVMKTCIQG  223 (570)
T ss_dssp             TTSCCCEE-----------CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT--TCEEEEEEEESCCSCTTHHHHHHHT
T ss_pred             cCCcccee-----------cHHHccchhccchhhhhcccCCCCceecCHHHhc--cCcceeEecccccccccchhhhhcC
Confidence            77655321           11223334455    6888888887766554433  3479999998874322 122 3445


Q ss_pred             CCCcceEEeccc-----cCceeeCccccCCCCCCCCCCc-----ceeeccccccccccccCCCCCCCCCCCcccEEeEcC
Q 038658          413 LPSLKHLAVRRM-----SRVRRLGSEFYGNDTPIPFPCL-----ETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIG  482 (831)
Q Consensus       413 l~~L~~L~L~~~-----~~l~~~~~~~~~~~~~~~~~~L-----~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~  482 (831)
                      ++.++.+.+...     ..+..+..        ..|..+     +.+.+.+...+.    ...+..+..+++|++|++++
T Consensus       224 l~~l~~~~l~~~~~~~~~~l~~~~~--------~~~~~l~~l~l~~l~l~~~~~~~----~~~~~~~~~l~~L~~L~l~~  291 (570)
T 2z63_A          224 LAGLEVHRLVLGEFRNEGNLEKFDK--------SALEGLCNLTIEEFRLAYLDYYL----DDIIDLFNCLTNVSSFSLVS  291 (570)
T ss_dssp             TTTCEEEEEEEEECCCCSSCEECCT--------TTTGGGGGSEEEEEEEEETTEEE----SCSTTTTGGGTTCSEEEEES
T ss_pred             ccccceeeeccccccCchhhhhcch--------hhhccccccchhhhhhhcchhhh----hhchhhhcCcCcccEEEecC
Confidence            555655544321     11111111        123333     333333322222    22233356788999999998


Q ss_pred             CcCcccCCCC---CCCcccEEEEccccCccccCCCCCccceEEEcCCCCccccccccccCCCCceeeccccchhhccCCC
Q 038658          483 CSKLKGTFPE---HLPALEMLVIGGCEELLVSITSLPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPL  559 (831)
Q Consensus       483 c~~l~~~~p~---~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  559 (831)
                      | .++ .+|.   .+ +|+.|++++|.........+++|+.|++++|.......                          
T Consensus       292 ~-~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~--------------------------  342 (570)
T 2z63_A          292 V-TIE-RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS--------------------------  342 (570)
T ss_dssp             C-EEC-SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCC--------------------------
T ss_pred             c-cch-hhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccc--------------------------
Confidence            5 565 5664   34 88999999887543333568899999999887432110                          


Q ss_pred             CCCCCCCcEEEEccCCCcchhcccCCcccccCCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEeccCCCCcc
Q 038658          560 KPRLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVK  639 (831)
Q Consensus       560 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~  639 (831)
                      ...+++|+.|+++++..... . .....+..+++|++|++++| .+..++.. +.      .+ ++|++|++++|...+.
T Consensus       343 ~~~~~~L~~L~l~~n~l~~~-~-~~~~~~~~~~~L~~L~l~~n-~l~~~~~~-~~------~l-~~L~~L~l~~n~l~~~  411 (570)
T 2z63_A          343 EVDLPSLEFLDLSRNGLSFK-G-CCSQSDFGTTSLKYLDLSFN-GVITMSSN-FL------GL-EQLEHLDFQHSNLKQM  411 (570)
T ss_dssp             CCBCTTCCEEECCSSCCBEE-E-EEEHHHHTCSCCCEEECCSC-SEEEEEEE-EE------TC-TTCCEEECTTSEEESC
T ss_pred             cccCCCCCEEeCcCCccCcc-c-cccccccccCccCEEECCCC-cccccccc-cc------cc-CCCCEEEccCCccccc
Confidence            14588999999988863221 0 00233567899999999985 55555432 21      12 5799999999886655


Q ss_pred             cc-cccCCCCCCCeEEEecCCCCccccCCCC--CCCccEEEEecCCCC-cccccccccCCCCCcCeEEEccCCCccee-c
Q 038658          640 LP-QSLLSLSSLREIEIYNCSSFVSFPEVAL--PSKVRSISIHRCDAL-KSLPEAWMCDANLSLEILTISRCHSLTYI-A  714 (831)
Q Consensus       640 l~-~~l~~l~~L~~L~L~~~~~l~~l~~~~~--~~~L~~L~l~~c~~l-~~l~~~~~~~~l~~L~~L~l~~c~~l~~l-~  714 (831)
                      .| ..+..+++|++|++++|. +...+...+  +++|++|++++|... ..+|..+..  +++|++|++++|. ++.+ |
T Consensus       412 ~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~--l~~L~~L~l~~n~-l~~~~~  487 (570)
T 2z63_A          412 SEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE--LRNLTFLDLSQCQ-LEQLSP  487 (570)
T ss_dssp             TTSCTTTTCTTCCEEECTTSC-CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT--CTTCCEEECTTSC-CCEECT
T ss_pred             cchhhhhcCCCCCEEeCcCCc-ccccchhhhhcCCcCcEEECcCCcCccccchhhhhc--ccCCCEEECCCCc-cccCCh
Confidence            44 467889999999999984 444333333  889999999998754 357777766  8999999999984 5555 3


Q ss_pred             cC-CCCCCCceEEEecCCCCCccccccCccCCcccccCccccceEEEecCCCc
Q 038658          715 EV-QLPPSLKNVVIRNCDNVRTLTVEEGIQSSSSRRYTSSLLEHLHIESCPSL  766 (831)
Q Consensus       715 ~~-~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~l~~~~L~~L~i~~c~~l  766 (831)
                      .. ..+++|++|++++| +++.+. +..+..     +++  |++|++++|+-.
T Consensus       488 ~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~-----l~~--L~~L~l~~N~~~  531 (570)
T 2z63_A          488 TAFNSLSSLQVLNMASN-QLKSVP-DGIFDR-----LTS--LQKIWLHTNPWD  531 (570)
T ss_dssp             TTTTTCTTCCEEECCSS-CCSCCC-TTTTTT-----CTT--CCEEECCSSCBC
T ss_pred             hhhhcccCCCEEeCCCC-cCCCCC-HHHhhc-----ccC--CcEEEecCCccc
Confidence            32 44578999999886 666662 334554     777  999999987543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.97  E-value=2.5e-30  Score=289.97  Aligned_cols=423  Identities=17%  Similarity=0.163  Sum_probs=196.0

Q ss_pred             cceEEEEeCCCCccccC-ccccCCCCCceeecCCCCCCcc-chhhhccCCccEEeecCcCccccccccccCccccccccc
Q 038658          192 QRLRVFSLCGYWISELP-DSIGDLRYLRYLNLSGTQIRTL-PESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNN  269 (831)
Q Consensus       192 ~~L~~L~L~~~~i~~lp-~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l  269 (831)
                      ++|++|++++|.++.++ ..|.++++|++|++++|+++.+ |..++++++|++|++++|. +..+|..  .+++|++|++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~L   97 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-LVKISCH--PTVNLKHLDL   97 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC-CCEEECC--CCCCCSEEEC
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc-eeecCcc--ccCCccEEec
Confidence            45555555555555543 4455555555555555555544 4455555555555555543 3345544  5555555555


Q ss_pred             CCCCCcc-cccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCC
Q 038658          270 SNTDSLE-EMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSS  348 (831)
Q Consensus       270 ~~~~~~~-~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~  348 (831)
                      ++|.+.+ .+|..+++++                                             +|++|++++|....   
T Consensus        98 ~~N~l~~~~~p~~~~~l~---------------------------------------------~L~~L~L~~n~l~~---  129 (520)
T 2z7x_B           98 SFNAFDALPICKEFGNMS---------------------------------------------QLKFLGLSTTHLEK---  129 (520)
T ss_dssp             CSSCCSSCCCCGGGGGCT---------------------------------------------TCCEEEEEESSCCG---
T ss_pred             cCCccccccchhhhccCC---------------------------------------------cceEEEecCcccch---
Confidence            5555322 2344444444                                             44445554443311   


Q ss_pred             hhhhhhHHhhhcCCCCCCCc--cEEEEeeecC---CCCCccCCCCCCC-ceeEEEEecCCCCCCCC--CCCCCCCcceEE
Q 038658          349 LREAETQKGVLDMLKPHKNL--EQFFISGYGG---TKFPIWLGDSSFS-NLVTLKFEDCGMCTTLP--SVGQLPSLKHLA  420 (831)
Q Consensus       349 ~~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~---~~~p~~~~~~~~~-~L~~L~l~~~~~~~~~~--~l~~l~~L~~L~  420 (831)
                                 ..+..+++|  +.|++++|..   ...|.++..  +. +...+++.+|...+.++  .+..+++|+.|+
T Consensus       130 -----------~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~--l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~  196 (520)
T 2z7x_B          130 -----------SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD--FNTESLHIVFPTNKEFHFILDVSVKTVANLELSN  196 (520)
T ss_dssp             -----------GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTT--CCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECC
T ss_pred             -----------hhccccccceeeEEEeecccccccccccccccc--cccceEEEEeccCcchhhhhhhhhhcccceeecc
Confidence                       112223344  6666666654   233444432  22 23455666666665555  456677777777


Q ss_pred             eccccC-------ceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCCCC
Q 038658          421 VRRMSR-------VRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPEH  493 (831)
Q Consensus       421 L~~~~~-------l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~  493 (831)
                      ++++..       ...++ .      ...+++|+.|.+.++.--........+  ....++|++|++++| ++++.+|..
T Consensus       197 l~~n~~~~~~~~~~~~~~-~------l~~l~~L~~L~l~~~~l~~~~~~~~~~--~~~~~~L~~L~l~~n-~l~~~~p~~  266 (520)
T 2z7x_B          197 IKCVLEDNKCSYFLSILA-K------LQTNPKLSNLTLNNIETTWNSFIRILQ--LVWHTTVWYFSISNV-KLQGQLDFR  266 (520)
T ss_dssp             EEECCSTTTTHHHHHHHH-G------GGGCTTCCEEEEEEEEEEHHHHHHHHH--HHHTSSCSEEEEEEE-EEESCCCCC
T ss_pred             ccccccccccceeecchh-h------hccccchhhccccccccCHHHHHHHHH--HhhhCcccEEEeecc-cccCccccc
Confidence            776531       11110 1      122566666666553211110000000  001357777777774 555556543


Q ss_pred             --------CCcccEEEEccccC-cc-ccCCC---CCccceEEEcCCCCccccccccccCCCCceeeccccchhhccCCCC
Q 038658          494 --------LPALEMLVIGGCEE-LL-VSITS---LPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLK  560 (831)
Q Consensus       494 --------l~~L~~L~l~~~~~-l~-~~~~~---l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  560 (831)
                              +++|+.+++++|.. ++ ..+..   -++|+.|++++|......                          .+
T Consensus       267 ~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--------------------------~~  320 (520)
T 2z7x_B          267 DFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML--------------------------CP  320 (520)
T ss_dssp             CCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC--------------------------CC
T ss_pred             hhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc--------------------------ch
Confidence                    34444445544442 00 00111   134666666665522100                          11


Q ss_pred             CCCCCCcEEEEccCCCcchhcccCCcccccCCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEeccCCCCccc
Q 038658          561 PRLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKL  640 (831)
Q Consensus       561 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l  640 (831)
                      ..+++|++|+++++....    .....+..+++|++|+++++ .+..++.-    ...+..+ ++|++|++++|...+.+
T Consensus       321 ~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~N-~l~~l~~~----~~~~~~l-~~L~~L~Ls~N~l~~~l  390 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTD----TVFENCGHLTELETLILQMN-QLKELSKI----AEMTTQM-KSLQQLDISQNSVSYDE  390 (520)
T ss_dssp             SSCCCCCEEECCSSCCCT----TTTTTCCCCSSCCEEECCSS-CCCBHHHH----HHHHTTC-TTCCEEECCSSCCBCCG
T ss_pred             hhCCcccEEEeECCccCh----hhhhhhccCCCCCEEEccCC-ccCccccc----hHHHhhC-CCCCEEECCCCcCCccc
Confidence            345666666666654222    11223355566666666653 34432210    0001111 35666666665544434


Q ss_pred             ccc-cCCCCCCCeEEEecCCCCccccCCCCCCCccEEEEecCCCCcccccccccCCCCCcCeEEEccCCCcceeccC--C
Q 038658          641 PQS-LLSLSSLREIEIYNCSSFVSFPEVALPSKVRSISIHRCDALKSLPEAWMCDANLSLEILTISRCHSLTYIAEV--Q  717 (831)
Q Consensus       641 ~~~-l~~l~~L~~L~L~~~~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~--~  717 (831)
                      |.. +..+++|++|++++|...+.+|. .++++|++|++++|. ++.+|..+..  +++|++|++++| .++.+|..  .
T Consensus       391 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~l~~~L~~L~Ls~N~-l~~ip~~~~~--l~~L~~L~L~~N-~l~~l~~~~~~  465 (520)
T 2z7x_B          391 KKGDCSWTKSLLSLNMSSNILTDTIFR-CLPPRIKVLDLHSNK-IKSIPKQVVK--LEALQELNVASN-QLKSVPDGIFD  465 (520)
T ss_dssp             GGCSCCCCTTCCEEECCSSCCCGGGGG-SCCTTCCEEECCSSC-CCCCCGGGGG--CTTCCEEECCSS-CCCCCCTTTTT
T ss_pred             ccchhccCccCCEEECcCCCCCcchhh-hhcccCCEEECCCCc-ccccchhhhc--CCCCCEEECCCC-cCCccCHHHhc
Confidence            432 44555666666666532233322 122455555555542 3455544443  555555555554 34444432  1


Q ss_pred             CCCCCceEEEec
Q 038658          718 LPPSLKNVVIRN  729 (831)
Q Consensus       718 ~~~~L~~L~l~~  729 (831)
                      .+++|++|++++
T Consensus       466 ~l~~L~~L~l~~  477 (520)
T 2z7x_B          466 RLTSLQKIWLHT  477 (520)
T ss_dssp             TCTTCCEEECCS
T ss_pred             cCCcccEEECcC
Confidence            123444444444

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.97  E-value=3.4e-31  Score=306.01  Aligned_cols=355  Identities=13%  Similarity=0.102  Sum_probs=194.1

Q ss_pred             cCccccCCCCCceeecCCCCCCc------------------cchhhh--ccCCccEEeecCcCccccccccccCcccccc
Q 038658          207 LPDSIGDLRYLRYLNLSGTQIRT------------------LPESVN--KLYNLHTLSLEGCRGLRKLCAGMGNLIKLHH  266 (831)
Q Consensus       207 lp~~~~~l~~Lr~L~L~~~~i~~------------------lp~~i~--~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~  266 (831)
                      +|.+|+++++|++|+|++|.++.                  +|+.++  ++++|++|+|++|...+.+|..++++++|++
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS  519 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence            66666667777777777776665                  666665  6777777777766666666666777777777


Q ss_pred             cccCCCC-Ccc-cccCCCCCcc-------ccccccceEecCCCCCcchhhhccccccCeeeEccccc-ccccCCCCcceE
Q 038658          267 LNNSNTD-SLE-EMPLGIGKLT-------CLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLEN-AQLDGKKNLKVL  336 (831)
Q Consensus       267 L~l~~~~-~~~-~~p~~~~~L~-------~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~-~~l~~~~~L~~L  336 (831)
                      |++++|. +.+ .+|.++++++       +|+.|...                     .+.+..+.. ..+..+++|+.|
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls---------------------~N~L~~ip~~~~l~~L~~L~~L  578 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG---------------------YNNLEEFPASASLQKMVKLGLL  578 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECC---------------------SSCCCBCCCHHHHTTCTTCCEE
T ss_pred             EECcCCCCcccccchHHHHhhhhcccccCCccEEEee---------------------CCcCCccCChhhhhcCCCCCEE
Confidence            7777665 343 4665555444       55555111                     111111111 134555666666


Q ss_pred             EEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCc-eeEEEEecCCCCCCCC-CCCCCC
Q 038658          337 MLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSN-LVTLKFEDCGMCTTLP-SVGQLP  414 (831)
Q Consensus       337 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~-L~~L~l~~~~~~~~~~-~l~~l~  414 (831)
                      ++++|....            .+ .+..+++|+.|++++|.+..+|.++..  +++ |+.|++++|.+. .+| .+..++
T Consensus       579 ~Ls~N~l~~------------lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~--l~~~L~~L~Ls~N~L~-~lp~~~~~~~  642 (876)
T 4ecn_A          579 DCVHNKVRH------------LE-AFGTNVKLTDLKLDYNQIEEIPEDFCA--FTDQVEGLGFSHNKLK-YIPNIFNAKS  642 (876)
T ss_dssp             ECTTSCCCB------------CC-CCCTTSEESEEECCSSCCSCCCTTSCE--ECTTCCEEECCSSCCC-SCCSCCCTTC
T ss_pred             ECCCCCccc------------ch-hhcCCCcceEEECcCCccccchHHHhh--ccccCCEEECcCCCCC-cCchhhhccc
Confidence            665554421            12 456667777777777777777766654  666 777777777766 444 444443


Q ss_pred             --CcceEEeccccCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCCC
Q 038658          415 --SLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPE  492 (831)
Q Consensus       415 --~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~  492 (831)
                        +|+.|+++++.....++. +....  .                           ....++|+.|++++| .++ .+|.
T Consensus       643 ~~~L~~L~Ls~N~l~g~ip~-l~~~l--~---------------------------~~~~~~L~~L~Ls~N-~L~-~lp~  690 (876)
T 4ecn_A          643 VYVMGSVDFSYNKIGSEGRN-ISCSM--D---------------------------DYKGINASTVTLSYN-EIQ-KFPT  690 (876)
T ss_dssp             SSCEEEEECCSSCTTTTSSS-CSSCT--T---------------------------TCCCCCEEEEECCSS-CCC-SCCH
T ss_pred             cCCCCEEECcCCcCCCcccc-chhhh--c---------------------------cccCCCcCEEEccCC-cCC-ccCH
Confidence              377777776542211100 00000  0                           002234555555552 343 4442


Q ss_pred             ----CCCcccEEEEccccC--cccc--------CCCCCccceEEEcCCCCccccccccccCCCCceeeccccchhhccCC
Q 038658          493 ----HLPALEMLVIGGCEE--LLVS--------ITSLPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGP  558 (831)
Q Consensus       493 ----~l~~L~~L~l~~~~~--l~~~--------~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  558 (831)
                          .+++|+.|++++|..  ++..        ...+++|+.|++++|.....+..                        
T Consensus       691 ~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~------------------------  746 (876)
T 4ecn_A          691 ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDD------------------------  746 (876)
T ss_dssp             HHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGG------------------------
T ss_pred             HHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHH------------------------
Confidence                345555555555541  1111        11233778888877763211100                        


Q ss_pred             CC-CCCCCCcEEEEccCCCcchhcccCCcccccCCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEeccCCCC
Q 038658          559 LK-PRLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGL  637 (831)
Q Consensus       559 ~~-~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~  637 (831)
                      +. ..+++|+.|+++++.-- .   +|.. +..+++|+.|++++++                          ++++|...
T Consensus       747 l~~~~l~~L~~L~Ls~N~L~-~---lp~~-l~~L~~L~~L~Ls~N~--------------------------~ls~N~l~  795 (876)
T 4ecn_A          747 FRATTLPYLSNMDVSYNCFS-S---FPTQ-PLNSSQLKAFGIRHQR--------------------------DAEGNRIL  795 (876)
T ss_dssp             GSTTTCTTCCEEECCSSCCS-S---CCCG-GGGCTTCCEEECCCCB--------------------------CTTCCBCC
T ss_pred             hhhccCCCcCEEEeCCCCCC-c---cchh-hhcCCCCCEEECCCCC--------------------------Cccccccc
Confidence            00 13445555555544311 1   1211 2234444444443321                          12346667


Q ss_pred             cccccccCCCCCCCeEEEecCCCCccccCCCCCCCccEEEEecCCCCccc
Q 038658          638 VKLPQSLLSLSSLREIEIYNCSSFVSFPEVALPSKVRSISIHRCDALKSL  687 (831)
Q Consensus       638 ~~l~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~L~~L~l~~c~~l~~l  687 (831)
                      +.+|..+..+++|+.|+|++| .++.+|.. +.++|+.|++++|+..+.-
T Consensus       796 ~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~-l~~~L~~LdLs~N~l~~i~  843 (876)
T 4ecn_A          796 RQWPTGITTCPSLIQLQIGSN-DIRKVDEK-LTPQLYILDIADNPNISID  843 (876)
T ss_dssp             CCCCTTGGGCSSCCEEECCSS-CCCBCCSC-CCSSSCEEECCSCTTCEEE
T ss_pred             ccChHHHhcCCCCCEEECCCC-CCCccCHh-hcCCCCEEECCCCCCCccC
Confidence            778888888999999999998 45888865 4578888888887754433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.97  E-value=4.3e-31  Score=296.24  Aligned_cols=449  Identities=14%  Similarity=0.100  Sum_probs=294.5

Q ss_pred             eEEEEEccccCccccccccccCCcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCcccc-CccccCCCCCc
Q 038658          140 RHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISEL-PDSIGDLRYLR  218 (831)
Q Consensus       140 r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~Lr  218 (831)
                      +++.+..+....+..  .+.  ++++.|.+.+      +.+....+..+..+++|++|+|++|.++.+ |..|+++++|+
T Consensus         3 ~~l~ls~n~l~~ip~--~~~--~~L~~L~Ls~------n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~   72 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPK--DLS--QKTTILNISQ------NYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELE   72 (520)
T ss_dssp             CEEECTTSCCSSCCC--SCC--TTCSEEECCS------SCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCC
T ss_pred             ceEecCCCCcccccc--ccc--ccccEEECCC------CcccccChhhccccccccEEecCCCccCCcChHHhhcccCCC
Confidence            445555554443321  122  7889885543      445544456677999999999999999988 78999999999


Q ss_pred             eeecCCCCCCccchhhhccCCccEEeecCcCccc-cccccccCcccccccccCCCCCcccccCCCCCccccccccceEec
Q 038658          219 YLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLR-KLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVG  297 (831)
Q Consensus       219 ~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~  297 (831)
                      +|+|++|+++.+|..  .+++|++|++++|.... .+|..++++++|++|++++|.+.+   ..++.+++|         
T Consensus        73 ~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L---------  138 (520)
T 2z7x_B           73 YLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHL---------  138 (520)
T ss_dssp             EEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTS---------
T ss_pred             EEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccc---------
Confidence            999999999999987  89999999999987554 478899999999999999987332   223333333         


Q ss_pred             CCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecC--CCCCChhhhhhHHhhhcCCCCCC-CccEEEEe
Q 038658          298 KDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNS--TDGSSLREAETQKGVLDMLKPHK-NLEQFFIS  374 (831)
Q Consensus       298 ~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~--~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~  374 (831)
                                                        +|+.|++++|..  ...           .+..+..+. ....++++
T Consensus       139 ----------------------------------~L~~L~l~~n~l~~~~~-----------~~~~l~~l~~~~l~l~l~  173 (520)
T 2z7x_B          139 ----------------------------------NISKVLLVLGETYGEKE-----------DPEGLQDFNTESLHIVFP  173 (520)
T ss_dssp             ----------------------------------CEEEEEEEECTTTTSSC-----------CTTTTTTCCEEEEEEECC
T ss_pred             ----------------------------------eeeEEEeeccccccccc-----------ccccccccccceEEEEec
Confidence                                              124455554443  111           112222222 11123334


Q ss_pred             eecCCC-CCccCCCCCCCceeEEEEecCC-------CCCCCCCCCCCCCcceEEeccccCceeeCccccCCCCCCCCCCc
Q 038658          375 GYGGTK-FPIWLGDSSFSNLVTLKFEDCG-------MCTTLPSVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCL  446 (831)
Q Consensus       375 ~~~~~~-~p~~~~~~~~~~L~~L~l~~~~-------~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L  446 (831)
                      ++.... ++.... ..+++|+.|++++|.       +.+.++.++.+++|+.|++.++............   ....++|
T Consensus       174 ~n~~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~---~~~~~~L  249 (520)
T 2z7x_B          174 TNKEFHFILDVSV-KTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQ---LVWHTTV  249 (520)
T ss_dssp             SSSCCCCCCCCCC-TTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHH---HHHTSSC
T ss_pred             cCcchhhhhhhhh-hcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHH---HhhhCcc
Confidence            443221 222221 137788888888876       3344456677888888888765321111000000   0113578


Q ss_pred             ceeeccccccccccccCCCCCCC-----CCCCcccEEeEcCCcCcccCCCC-C------CCcccEEEEccccCccccC-C
Q 038658          447 ETLRFENLLEWEDWIPHGSTQGV-----EGFPKLRELEVIGCSKLKGTFPE-H------LPALEMLVIGGCEELLVSI-T  513 (831)
Q Consensus       447 ~~L~l~~~~~l~~~~~~~~~~~~-----~~~~~L~~L~l~~c~~l~~~~p~-~------l~~L~~L~l~~~~~l~~~~-~  513 (831)
                      +.|++.++.- .    +..+..+     +.+++|+.++++++ .+  .+|. .      -.+|+.|++++|......+ .
T Consensus       250 ~~L~l~~n~l-~----~~~p~~~~~~~~~~l~~L~~l~l~~n-~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  321 (520)
T 2z7x_B          250 WYFSISNVKL-Q----GQLDFRDFDYSGTSLKALSIHQVVSD-VF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPS  321 (520)
T ss_dssp             SEEEEEEEEE-E----SCCCCCCCCCCSCCCCEEEEEEEEEC-CC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCS
T ss_pred             cEEEeecccc-c----CccccchhhcccccCceeEecccccc-ce--ecchhhhhcccccCceeEEEcCCCccccccchh
Confidence            8888877431 1    1122223     57888888888884 44  4552 1      1468999999988655443 6


Q ss_pred             CCCccceEEEcCCCCccccccccccCCCCceeeccccchhhccCCCCCCCCCCcEEEEccCCCcchhcccCCcccccCCC
Q 038658          514 SLPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQDISS  593 (831)
Q Consensus       514 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~  593 (831)
                      .+++|++|++++|......                        ......+++|+.|+++++.... +...+ ..+..+++
T Consensus       322 ~l~~L~~L~Ls~n~l~~~~------------------------~~~~~~l~~L~~L~L~~N~l~~-l~~~~-~~~~~l~~  375 (520)
T 2z7x_B          322 KISPFLHLDFSNNLLTDTV------------------------FENCGHLTELETLILQMNQLKE-LSKIA-EMTTQMKS  375 (520)
T ss_dssp             SCCCCCEEECCSSCCCTTT------------------------TTTCCCCSSCCEEECCSSCCCB-HHHHH-HHHTTCTT
T ss_pred             hCCcccEEEeECCccChhh------------------------hhhhccCCCCCEEEccCCccCc-cccch-HHHhhCCC
Confidence            7889999999988743311                        1123568889999999887432 11111 23578899


Q ss_pred             ccEEeeecCCCccc-chhhhhhhHhhhhcccCCccEEEeccCCCCcccccccCCCCCCCeEEEecCCCCccccCCCC-CC
Q 038658          594 LKRLTIGWCPTLQS-LVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSLLSLSSLREIEIYNCSSFVSFPEVAL-PS  671 (831)
Q Consensus       594 L~~L~l~~c~~l~~-l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~l~~~~~-~~  671 (831)
                      |++|+++++ .+.. ++...+..       .++|++|++++|...+.+|..+.  ++|++|++++| .++.+|.... ++
T Consensus       376 L~~L~Ls~N-~l~~~l~~~~~~~-------l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~ip~~~~~l~  444 (520)
T 2z7x_B          376 LQQLDISQN-SVSYDEKKGDCSW-------TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN-KIKSIPKQVVKLE  444 (520)
T ss_dssp             CCEEECCSS-CCBCCGGGCSCCC-------CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS-CCCCCCGGGGGCT
T ss_pred             CCEEECCCC-cCCcccccchhcc-------CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC-cccccchhhhcCC
Confidence            999999985 5555 65432222       25799999999988777776654  79999999998 6778886444 89


Q ss_pred             CccEEEEecCCCCcccccc-cccCCCCCcCeEEEccCCC
Q 038658          672 KVRSISIHRCDALKSLPEA-WMCDANLSLEILTISRCHS  709 (831)
Q Consensus       672 ~L~~L~l~~c~~l~~l~~~-~~~~~l~~L~~L~l~~c~~  709 (831)
                      +|++|++++|. ++.+|.. +..  +++|++|++++|+-
T Consensus       445 ~L~~L~L~~N~-l~~l~~~~~~~--l~~L~~L~l~~N~~  480 (520)
T 2z7x_B          445 ALQELNVASNQ-LKSVPDGIFDR--LTSLQKIWLHTNPW  480 (520)
T ss_dssp             TCCEEECCSSC-CCCCCTTTTTT--CTTCCEEECCSSCB
T ss_pred             CCCEEECCCCc-CCccCHHHhcc--CCcccEEECcCCCC
Confidence            99999999974 6678876 555  89999999999763

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.97  E-value=5.8e-31  Score=300.28  Aligned_cols=107  Identities=17%  Similarity=0.238  Sum_probs=69.2

Q ss_pred             ccccccCCcceEEEEeCCCCccc------------------cCcccc--CCCCCceeecCCCCCC-ccchhhhccCCccE
Q 038658          184 ILPKLFKLQRLRVFSLCGYWISE------------------LPDSIG--DLRYLRYLNLSGTQIR-TLPESVNKLYNLHT  242 (831)
Q Consensus       184 ~~~~~~~l~~L~~L~L~~~~i~~------------------lp~~~~--~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~  242 (831)
                      +|..+.++++|++|+|++|.++.                  +|..++  ++++|++|++++|.+. .+|..++++++|++
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  277 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL  277 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence            56656666667777777666665                  666666  6677777777666654 56666666777777


Q ss_pred             EeecCcC-ccc-cccccccCc------ccccccccCCCCCcccccC--CCCCccccccc
Q 038658          243 LSLEGCR-GLR-KLCAGMGNL------IKLHHLNNSNTDSLEEMPL--GIGKLTCLQTL  291 (831)
Q Consensus       243 L~l~~~~-~~~-~lp~~i~~L------~~L~~L~l~~~~~~~~~p~--~~~~L~~L~~L  291 (831)
                      |++++|. ... .+|..++++      ++|++|++++|. +..+|.  .++++++|++|
T Consensus       278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L  335 (636)
T 4eco_A          278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGML  335 (636)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEE
T ss_pred             EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEE
Confidence            7776665 333 466666665      667777776666 336666  56666666665

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.97  E-value=3.8e-29  Score=282.57  Aligned_cols=411  Identities=18%  Similarity=0.119  Sum_probs=199.1

Q ss_pred             cceEEEEeCCCCccccC-ccccCCCCCceeecCCCCCCcc-chhhhccCCccEEeecCcCccccccccccCccccccccc
Q 038658          192 QRLRVFSLCGYWISELP-DSIGDLRYLRYLNLSGTQIRTL-PESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNN  269 (831)
Q Consensus       192 ~~L~~L~L~~~~i~~lp-~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l  269 (831)
                      ++|++|++++|.++.+| .+|+++++|++|+|++|.++.+ |..++++++|++|++++|. +..+|..  .+++|++|++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~L  128 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR-LQNISCC--PMASLRHLDL  128 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC-CCEECSC--CCTTCSEEEC
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc-CCccCcc--ccccCCEEEC
Confidence            45666666666666553 4556666666666666666655 4455666666666666654 4455554  5666666666


Q ss_pred             CCCCCcccc--cCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCC
Q 038658          270 SNTDSLEEM--PLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGS  347 (831)
Q Consensus       270 ~~~~~~~~~--p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~  347 (831)
                      ++|. +..+  |..++++++|                                             +.|+++.|..... 
T Consensus       129 s~N~-l~~l~~p~~~~~l~~L---------------------------------------------~~L~L~~n~l~~~-  161 (562)
T 3a79_B          129 SFND-FDVLPVCKEFGNLTKL---------------------------------------------TFLGLSAAKFRQL-  161 (562)
T ss_dssp             CSSC-CSBCCCCGGGGGCTTC---------------------------------------------CEEEEECSBCCTT-
T ss_pred             CCCC-ccccCchHhhcccCcc---------------------------------------------cEEecCCCccccC-
Confidence            6665 3222  2344444444                                             4444544433211 


Q ss_pred             ChhhhhhHHhhhcCCCCCCCccEEEEeeecC--C-CCCccCCCCCCCceeEEEEecCCCCCCCC--CCCCCCCcceEEec
Q 038658          348 SLREAETQKGVLDMLKPHKNLEQFFISGYGG--T-KFPIWLGDSSFSNLVTLKFEDCGMCTTLP--SVGQLPSLKHLAVR  422 (831)
Q Consensus       348 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~--~-~~p~~~~~~~~~~L~~L~l~~~~~~~~~~--~l~~l~~L~~L~L~  422 (831)
                                .+..+..+ +|+.|++++|..  . ..|.++..... ..-.+++++|.+...++  .+..+++|+.++++
T Consensus       162 ----------~~~~l~~L-~L~~L~L~~n~l~~~~~~~~~l~~l~~-~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~  229 (562)
T 3a79_B          162 ----------DLLPVAHL-HLSCILLDLVSYHIKGGETESLQIPNT-TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIK  229 (562)
T ss_dssp             ----------TTGGGTTS-CEEEEEEEESSCCCCSSSCCEEEECCE-EEEEEEECSSSCCCCCCEEEESSEEEEEEEEEE
T ss_pred             ----------chhhhhhc-eeeEEEeecccccccccCcccccccCc-ceEEEEecCccchhhhhhhcccccceEEEeccc
Confidence                      11111122 336666666654  2 22333322111 12244666666655554  35567777777777


Q ss_pred             ccc----CceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCCCCC----
Q 038658          423 RMS----RVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPEHL----  494 (831)
Q Consensus       423 ~~~----~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l----  494 (831)
                      ++.    .+......+      ...++|+.|.+.++.--...... .+. ....++|++|++++| .+++.+|..+    
T Consensus       230 ~n~~~~~~l~~~~~~l------~~l~~L~~L~L~~~~l~~~~~~~-~~~-~~~~~~L~~L~l~~n-~l~~~ip~~~~~~~  300 (562)
T 3a79_B          230 LNDENCQRLMTFLSEL------TRGPTLLNVTLQHIETTWKCSVK-LFQ-FFWPRPVEYLNIYNL-TITERIDREEFTYS  300 (562)
T ss_dssp             CCSTTHHHHHHHHHHH------HSCSSCEEEEEEEEEECHHHHHH-HHH-HHTTSSEEEEEEEEE-EECSCCCCCCCCCC
T ss_pred             ccccccchHHHHHHHH------hccCcceEEEecCCcCcHHHHHH-HHH-hhhcccccEEEEecc-Eeeccccchhhhcc
Confidence            642    111111111      12566666666654211110000 000 012358899999885 5666777655    


Q ss_pred             -CcccEEEEccccCccccCC--------CCCccceEEEcCCCCccccccccccCCCCceeeccccchhhccCCCCCCCCC
Q 038658          495 -PALEMLVIGGCEELLVSIT--------SLPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPK  565 (831)
Q Consensus       495 -~~L~~L~l~~~~~l~~~~~--------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  565 (831)
                       ++|+.|.+.++..-...++        ..++|+.|++++|......                          .+..+++
T Consensus       301 ~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--------------------------~~~~l~~  354 (562)
T 3a79_B          301 ETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--------------------------CPPSPSS  354 (562)
T ss_dssp             SCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--------------------------CCSSCCC
T ss_pred             cccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--------------------------CccCCCC
Confidence             6666666555442111111        1245777777776532210                          1134666


Q ss_pred             CcEEEEccCCCcchhcccCCcccccCCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEeccCCCCccccc-cc
Q 038658          566 LEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQ-SL  644 (831)
Q Consensus       566 L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~-~l  644 (831)
                      |++|+++++.-..    .....+..+++|++|+++++ .++.++...    ..+..+ ++|++|++++|...+.+|. .+
T Consensus       355 L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~----~~~~~l-~~L~~L~l~~N~l~~~~~~~~~  424 (562)
T 3a79_B          355 FTFLNFTQNVFTD----SVFQGCSTLKRLQTLILQRN-GLKNFFKVA----LMTKNM-SSLETLDVSLNSLNSHAYDRTC  424 (562)
T ss_dssp             CCEEECCSSCCCT----TTTTTCCSCSSCCEEECCSS-CCCBTTHHH----HTTTTC-TTCCEEECTTSCCBSCCSSCCC
T ss_pred             ceEEECCCCcccc----chhhhhcccCCCCEEECCCC-CcCCcccch----hhhcCC-CCCCEEECCCCcCCCccChhhh
Confidence            7777776665222    12233455666666666663 444432110    000111 3566666666554443443 24


Q ss_pred             CCCCCCCeEEEecCCCCccccCCCCCCCccEEEEecCCCCcccccccccCCCCCcCeEEEccCCCcceec
Q 038658          645 LSLSSLREIEIYNCSSFVSFPEVALPSKVRSISIHRCDALKSLPEAWMCDANLSLEILTISRCHSLTYIA  714 (831)
Q Consensus       645 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~  714 (831)
                      ..+++|++|++++|.....+|. .++++|++|++++| .++.+|..+..  +++|++|++++| .++.+|
T Consensus       425 ~~l~~L~~L~l~~n~l~~~~~~-~l~~~L~~L~L~~N-~l~~ip~~~~~--l~~L~~L~L~~N-~l~~l~  489 (562)
T 3a79_B          425 AWAESILVLNLSSNMLTGSVFR-CLPPKVKVLDLHNN-RIMSIPKDVTH--LQALQELNVASN-QLKSVP  489 (562)
T ss_dssp             CCCTTCCEEECCSSCCCGGGGS-SCCTTCSEEECCSS-CCCCCCTTTTS--SCCCSEEECCSS-CCCCCC
T ss_pred             cCcccCCEEECCCCCCCcchhh-hhcCcCCEEECCCC-cCcccChhhcC--CCCCCEEECCCC-CCCCCC
Confidence            4555666666666532222222 11245555555554 34455544433  555555555553 344444

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.96  E-value=6.2e-29  Score=287.05  Aligned_cols=482  Identities=18%  Similarity=0.096  Sum_probs=266.6

Q ss_pred             ceEEEEeCCCCccccC-ccccCCCCCceeecCCCCCCccch-hhhccCCccEEeecCcCccccccc-cccCccccccccc
Q 038658          193 RLRVFSLCGYWISELP-DSIGDLRYLRYLNLSGTQIRTLPE-SVNKLYNLHTLSLEGCRGLRKLCA-GMGNLIKLHHLNN  269 (831)
Q Consensus       193 ~L~~L~L~~~~i~~lp-~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~l  269 (831)
                      .+++|||++|.|+.+| .+|.++++||+|+|++|+|+.+|+ +|.+|++|++|+|++|. +..+|. .|++|++|++|++
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEEEC
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEEEC
Confidence            5677777777777774 567777777777777777777754 56777777777777765 445543 4677777777777


Q ss_pred             CCCCCcccccC-CCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccc-cccccCCCCcceEEEEeecCCCCC
Q 038658          270 SNTDSLEEMPL-GIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLE-NAQLDGKKNLKVLMLRWTNSTDGS  347 (831)
Q Consensus       270 ~~~~~~~~~p~-~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~-~~~l~~~~~L~~L~l~~~~~~~~~  347 (831)
                      ++|. +..+|. .|+++++|++|.....                     .+..+. ...+..+++|+.|++++|......
T Consensus       132 s~N~-l~~l~~~~~~~L~~L~~L~Ls~N---------------------~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~  189 (635)
T 4g8a_A          132 VETN-LASLENFPIGHLKTLKELNVAHN---------------------LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY  189 (635)
T ss_dssp             TTSC-CCCSTTCCCTTCTTCCEEECCSS---------------------CCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred             CCCc-CCCCChhhhhcCcccCeeccccC---------------------ccccCCCchhhccchhhhhhcccCccccccc
Confidence            7776 444554 3777777777732111                     111111 122334445555555544432210


Q ss_pred             ChhhhhhHHhhhcCCCCC-CCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCC---------------------
Q 038658          348 SLREAETQKGVLDMLKPH-KNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCT---------------------  405 (831)
Q Consensus       348 ~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~---------------------  405 (831)
                      ..        .+..+... .....++++.+....++.....  ...+..+++.++....                     
T Consensus       190 ~~--------~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~--~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~  259 (635)
T 4g8a_A          190 CT--------DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK--EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG  259 (635)
T ss_dssp             GG--------GGHHHHTCTTCCCEEECTTCCCCEECTTTTT--TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEE
T ss_pred             cc--------cccchhhhhhhhhhhhcccCcccccCccccc--chhhhhhhhhcccccccccchhhcCCccccccccccc
Confidence            00        00000000 1122333444443333322221  2233344443332211                     


Q ss_pred             ------CCC-----CCCCCCCcceEEeccccCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCc
Q 038658          406 ------TLP-----SVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPK  474 (831)
Q Consensus       406 ------~~~-----~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~  474 (831)
                            .+.     .+..+..+....+............ .  .....+.+++.+.+.+..... ..      .+..+..
T Consensus       260 ~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-~--~~~~~~~~l~~l~~~~~~~~~-~~------~~~~~~~  329 (635)
T 4g8a_A          260 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGI-I--DLFNCLTNVSSFSLVSVTIER-VK------DFSYNFG  329 (635)
T ss_dssp             CCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEEC-T--TTTGGGTTCSEEEEESCEEEE-CG------GGGSCCC
T ss_pred             ccccccccccccccccccccchhhhhhhhhhhcccccch-h--hhhhhhccccccccccccccc-cc------ccccchh
Confidence                  111     1222233333333221100000000 0  001224455666555432211 10      1334677


Q ss_pred             ccEEeEcCCcCcccCCCCCCCcccEEEEccccCc-cccCCCCCccceEEEcCCCCccccccccccCCCCceeeccccchh
Q 038658          475 LRELEVIGCSKLKGTFPEHLPALEMLVIGGCEEL-LVSITSLPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQV  553 (831)
Q Consensus       475 L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  553 (831)
                      |+.|++.+| .+....+..++.|+.+.+..+... ......+++|+.++++.|.........                  
T Consensus       330 L~~L~l~~~-~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~------------------  390 (635)
T 4g8a_A          330 WQHLELVNC-KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS------------------  390 (635)
T ss_dssp             CSEEEEESC-EESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECC------------------
T ss_pred             hhhhhcccc-cccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccc------------------
Confidence            888888885 454344457788888888877632 223445788999999887743321110                  


Q ss_pred             hccCCCCCCCCCCcEEEEccCCCcchhcccCCcccccCCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEecc
Q 038658          554 LLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLND  633 (831)
Q Consensus       554 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~  633 (831)
                          .......+|+.+++..+....    .+ ..+..+++|+.+++..++.....+...+...       .+++.++++.
T Consensus       391 ----~~~~~~~~L~~L~~~~~~~~~----~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l-------~~l~~l~ls~  454 (635)
T 4g8a_A          391 ----QSDFGTISLKYLDLSFNGVIT----MS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL-------RNLIYLDISH  454 (635)
T ss_dssp             ----HHHHSCSCCCEEECCSCSEEE----EC-SCCTTCTTCCEEECTTSEEESTTSSCTTTTC-------TTCCEEECTT
T ss_pred             ----cchhhhhhhhhhhcccccccc----cc-ccccccccccchhhhhccccccccccccccc-------cccccccccc
Confidence                011235677788777665322    22 2346778888888877544433332222222       4788888888


Q ss_pred             CCCCcccccccCCCCCCCeEEEecCCCCccccCCCC--CCCccEEEEecCCCCcccccccccCCCCCcCeEEEccCCCcc
Q 038658          634 CKGLVKLPQSLLSLSSLREIEIYNCSSFVSFPEVAL--PSKVRSISIHRCDALKSLPEAWMCDANLSLEILTISRCHSLT  711 (831)
Q Consensus       634 ~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~l~~~~~--~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~  711 (831)
                      |......+..+..+++|+.|++++|.....+....+  +++|++|++++|..-+..|..+..  +++|++|++++| +++
T Consensus       455 n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~--l~~L~~L~Ls~N-~l~  531 (635)
T 4g8a_A          455 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS--LSSLQVLNMSHN-NFF  531 (635)
T ss_dssp             SCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT--CTTCCEEECTTS-CCC
T ss_pred             cccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcC--CCCCCEEECCCC-cCC
Confidence            887776777778888888888888865555443333  788888888887544444555655  888888888886 566


Q ss_pred             eeccC--CCCCCCceEEEecCCCCCccccccCccCCccccc-CccccceEEEecCC
Q 038658          712 YIAEV--QLPPSLKNVVIRNCDNVRTLTVEEGIQSSSSRRY-TSSLLEHLHIESCP  764 (831)
Q Consensus       712 ~l~~~--~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~l-~~~~L~~L~i~~c~  764 (831)
                      .++..  ..+++|++|+++++ +++.+. +..+..     + ++  |++|++++++
T Consensus       532 ~l~~~~~~~l~~L~~L~Ls~N-~l~~~~-~~~l~~-----l~~~--L~~L~L~~Np  578 (635)
T 4g8a_A          532 SLDTFPYKCLNSLQVLDYSLN-HIMTSK-KQELQH-----FPSS--LAFLNLTQND  578 (635)
T ss_dssp             BCCCGGGTTCTTCCEEECTTS-CCCBCC-SSCTTC-----CCTT--CCEEECTTCC
T ss_pred             CCChhHHhCCCCCCEEECCCC-cCCCCC-HHHHHh-----hhCc--CCEEEeeCCC
Confidence            66654  34578888888874 566553 444444     4 46  8888888754

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.96  E-value=2.2e-28  Score=266.19  Aligned_cols=266  Identities=18%  Similarity=0.124  Sum_probs=151.2

Q ss_pred             CCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCC-ccchhhhccCCc-------------cEEeecCcCcccccc
Q 038658          190 KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIR-TLPESVNKLYNL-------------HTLSLEGCRGLRKLC  255 (831)
Q Consensus       190 ~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L-------------~~L~l~~~~~~~~lp  255 (831)
                      +...|++|++++|.+..+|.+|+++++|++|++++|.+. .+|.+++++++|             ++|++++|. +..+|
T Consensus         9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp   87 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLP   87 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCC
T ss_pred             ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCC
Confidence            457788888888888888888888888888888888876 778888887765             888888765 55566


Q ss_pred             ccccCcccccccccCCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcce
Q 038658          256 AGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKV  335 (831)
Q Consensus       256 ~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~  335 (831)
                      ..   .++|++|++++|. +..+|..+   ++|++|...                     .+.+..+..    ..++|++
T Consensus        88 ~~---~~~L~~L~l~~n~-l~~lp~~~---~~L~~L~l~---------------------~n~l~~l~~----~~~~L~~  135 (454)
T 1jl5_A           88 EL---PPHLESLVASCNS-LTELPELP---QSLKSLLVD---------------------NNNLKALSD----LPPLLEY  135 (454)
T ss_dssp             SC---CTTCSEEECCSSC-CSSCCCCC---TTCCEEECC---------------------SSCCSCCCS----CCTTCCE
T ss_pred             CC---cCCCCEEEccCCc-CCcccccc---CCCcEEECC---------------------CCccCcccC----CCCCCCE
Confidence            52   3678888888887 44466543   455555211                     001111110    0157778


Q ss_pred             EEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCCCCCCCCC
Q 038658          336 LMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPS  415 (831)
Q Consensus       336 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~  415 (831)
                      |++++|....            .+ .+..+++|+.|++++|.+..+|.+     ..+|++|++++|.+.+ +|.++.+++
T Consensus       136 L~L~~n~l~~------------lp-~~~~l~~L~~L~l~~N~l~~lp~~-----~~~L~~L~L~~n~l~~-l~~~~~l~~  196 (454)
T 1jl5_A          136 LGVSNNQLEK------------LP-ELQNSSFLKIIDVDNNSLKKLPDL-----PPSLEFIAAGNNQLEE-LPELQNLPF  196 (454)
T ss_dssp             EECCSSCCSS------------CC-CCTTCTTCCEEECCSSCCSCCCCC-----CTTCCEEECCSSCCSS-CCCCTTCTT
T ss_pred             EECcCCCCCC------------Cc-ccCCCCCCCEEECCCCcCcccCCC-----cccccEEECcCCcCCc-CccccCCCC
Confidence            8887665432            11 467778888888888888777754     3588888998887765 667888888


Q ss_pred             cceEEeccccCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCCCCCC
Q 038658          416 LKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPEHLP  495 (831)
Q Consensus       416 L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~  495 (831)
                      |+.|+++++. +..++         ...++|+.|++.++. +..     .+ .++.+++|++|++++ ++++ .+|..++
T Consensus       197 L~~L~l~~N~-l~~l~---------~~~~~L~~L~l~~n~-l~~-----lp-~~~~l~~L~~L~l~~-N~l~-~l~~~~~  257 (454)
T 1jl5_A          197 LTAIYADNNS-LKKLP---------DLPLSLESIVAGNNI-LEE-----LP-ELQNLPFLTTIYADN-NLLK-TLPDLPP  257 (454)
T ss_dssp             CCEEECCSSC-CSSCC---------CCCTTCCEEECCSSC-CSS-----CC-CCTTCTTCCEEECCS-SCCS-SCCSCCT
T ss_pred             CCEEECCCCc-CCcCC---------CCcCcccEEECcCCc-CCc-----cc-ccCCCCCCCEEECCC-CcCC-ccccccc
Confidence            8888888764 22221         123577777777642 221     11 155677788888877 4665 5666666


Q ss_pred             cccEEEEccccCccccCCCCCccceEEEcCCC
Q 038658          496 ALEMLVIGGCEELLVSITSLPALSKLEIGGCK  527 (831)
Q Consensus       496 ~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~  527 (831)
                      +|+.|++++|.... .-..+++|+.|++++|.
T Consensus       258 ~L~~L~l~~N~l~~-l~~~~~~L~~L~ls~N~  288 (454)
T 1jl5_A          258 SLEALNVRDNYLTD-LPELPQSLTFLDVSENI  288 (454)
T ss_dssp             TCCEEECCSSCCSC-CCCCCTTCCEEECCSSC
T ss_pred             ccCEEECCCCcccc-cCcccCcCCEEECcCCc
Confidence            66666666665221 11123556666666554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.96  E-value=8.5e-28  Score=277.53  Aligned_cols=493  Identities=18%  Similarity=0.151  Sum_probs=288.4

Q ss_pred             cceEEccccccCCCcccccccccccccCCcceEEEEeCCCCccccC-ccccCCCCCceeecCCCCCCccch-hhhccCCc
Q 038658          163 HLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELP-DSIGDLRYLRYLNLSGTQIRTLPE-SVNKLYNL  240 (831)
Q Consensus       163 ~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp-~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L  240 (831)
                      .++.|.+      ++|.+..-.+..|.++++|++|+|++|.|+.+| .+|+++++|++|+|++|+|+.+|. .|.++++|
T Consensus        53 ~~~~LdL------s~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L  126 (635)
T 4g8a_A           53 STKNLDL------SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL  126 (635)
T ss_dssp             TCCEEEC------TTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTC
T ss_pred             CCCEEEe------eCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCC
Confidence            4566633      334443322334457777777777777777774 457777777777777777777764 46777777


Q ss_pred             cEEeecCcCccccccc-cccCcccccccccCCCCCcc-cccCCCCCccccccccceEec--CCCCCcchhhhccccccCe
Q 038658          241 HTLSLEGCRGLRKLCA-GMGNLIKLHHLNNSNTDSLE-EMPLGIGKLTCLQTLCNFVVG--KDSGSRLRELKLLTHLRGT  316 (831)
Q Consensus       241 ~~L~l~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~-~~p~~~~~L~~L~~L~~~~~~--~~~~~~~~~l~~L~~L~~~  316 (831)
                      ++|++++|. +..+|. .|+++++|++|++++|.+.. .+|..++.+++|++|......  ......+..+..+..+...
T Consensus       127 ~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~  205 (635)
T 4g8a_A          127 QKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS  205 (635)
T ss_dssp             CEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCE
T ss_pred             CEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhh
Confidence            777777765 444443 47777777777777776332 345567777777777322111  1111222233322221111


Q ss_pred             e-----eEcccccccccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCC---CCccCC--
Q 038658          317 L-----TISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTK---FPIWLG--  386 (831)
Q Consensus       317 l-----~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~---~p~~~~--  386 (831)
                      .     .+..+....+ ....++.+++..+...    .   ..   ....+..+..++...+.......   +.....  
T Consensus       206 ~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~----~---~~---~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~  274 (635)
T 4g8a_A          206 LDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDS----L---NV---MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA  274 (635)
T ss_dssp             EECTTCCCCEECTTTT-TTCEEEEEEEESCCSS----H---HH---HHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTT
T ss_pred             hhcccCcccccCcccc-cchhhhhhhhhccccc----c---cc---cchhhcCCcccccccccccccccccccccccccc
Confidence            1     1111111111 2233455555443221    0   00   11122334455555554332211   111000  


Q ss_pred             CCCCCceeEEEEecCCCCC----CCCCCCCCCCcceEEeccccCceeeCccccCCCCCCCCCCcceeecccccccccccc
Q 038658          387 DSSFSNLVTLKFEDCGMCT----TLPSVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIP  462 (831)
Q Consensus       387 ~~~~~~L~~L~l~~~~~~~----~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~  462 (831)
                      -.....+....+..+....    ....+..+.+++.+.+.++.... +..       ......|+.|.+.++..- ... 
T Consensus       275 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~-------~~~~~~L~~L~l~~~~~~-~~~-  344 (635)
T 4g8a_A          275 LEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER-VKD-------FSYNFGWQHLELVNCKFG-QFP-  344 (635)
T ss_dssp             TGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEE-CGG-------GGSCCCCSEEEEESCEES-SCC-
T ss_pred             cccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccc-ccc-------cccchhhhhhhccccccc-CcC-
Confidence            0113445555554443321    12245556777787776653222 111       122567788887764321 111 


Q ss_pred             CCCCCCCCCCCcccEEeEcCCcCcccCCC-CCCCcccEEEEccccCcc-----ccCCCCCccceEEEcCCCCcccccccc
Q 038658          463 HGSTQGVEGFPKLRELEVIGCSKLKGTFP-EHLPALEMLVIGGCEELL-----VSITSLPALSKLEIGGCKKVVWRSETD  536 (831)
Q Consensus       463 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~p-~~l~~L~~L~l~~~~~l~-----~~~~~l~~L~~L~l~~~~~~~~~~~~~  536 (831)
                            ...++.|+.+.+.++ .....++ ..+++|+.+++++|....     .....+.+|+.+++..+......    
T Consensus       345 ------~~~l~~L~~l~l~~n-~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~----  413 (635)
T 4g8a_A          345 ------TLKLKSLKRLTFTSN-KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMS----  413 (635)
T ss_dssp             ------CCBCTTCCEEEEESC-CSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEEC----
T ss_pred             ------cccchhhhhcccccc-cCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccc----
Confidence                  235678888888874 3332222 267889999998877422     23345778899988887643311    


Q ss_pred             ccCCCCceeeccccchhhccCCCCCCCCCCcEEEEccCCCcchhcccCCcccccCCCccEEeeecCCCcccchhhhhhhH
Q 038658          537 HLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQ  616 (831)
Q Consensus       537 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~  616 (831)
                                           .....+++|+.+++..+.....   .+...+..+++++.++++.+ .+.......+.. 
T Consensus       414 ---------------------~~~~~l~~L~~l~l~~~~~~~~---~~~~~~~~l~~l~~l~ls~n-~l~~~~~~~~~~-  467 (635)
T 4g8a_A          414 ---------------------SNFLGLEQLEHLDFQHSNLKQM---SEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNG-  467 (635)
T ss_dssp             ---------------------SCCTTCTTCCEEECTTSEEEST---TSSCTTTTCTTCCEEECTTS-CCEECCTTTTTT-
T ss_pred             ---------------------ccccccccccchhhhhcccccc---cccccccccccccccccccc-cccccccccccc-
Confidence                                 1234578888888887765443   44555678889999999874 555554333222 


Q ss_pred             hhhhcccCCccEEEeccCCCCcc-cccccCCCCCCCeEEEecCCCCccccCCCC--CCCccEEEEecCCCCcccc-cccc
Q 038658          617 QQLCELSCRLEYLLLNDCKGLVK-LPQSLLSLSSLREIEIYNCSSFVSFPEVAL--PSKVRSISIHRCDALKSLP-EAWM  692 (831)
Q Consensus       617 ~~l~~~~~~L~~L~l~~~~~~~~-l~~~l~~l~~L~~L~L~~~~~l~~l~~~~~--~~~L~~L~l~~c~~l~~l~-~~~~  692 (831)
                            .++|++|++++|..... .|..+..+++|++|+|++| .++.++...+  +++|++|++++|. ++.++ ..+.
T Consensus       468 ------~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~  539 (635)
T 4g8a_A          468 ------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYK  539 (635)
T ss_dssp             ------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CCBCCCGGGT
T ss_pred             ------chhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCCc-CCCCChhHHh
Confidence                  25799999999875553 5778889999999999998 6777765544  8999999999975 55554 4555


Q ss_pred             cCCCCCcCeEEEccCCCcceeccC---CCCCCCceEEEecCC
Q 038658          693 CDANLSLEILTISRCHSLTYIAEV---QLPPSLKNVVIRNCD  731 (831)
Q Consensus       693 ~~~l~~L~~L~l~~c~~l~~l~~~---~~~~~L~~L~l~~c~  731 (831)
                      .  +++|++|++++| .++.++..   .++++|++|++++++
T Consensus       540 ~--l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np  578 (635)
T 4g8a_A          540 C--LNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQND  578 (635)
T ss_dssp             T--CTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred             C--CCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence            5  899999999997 56666544   345789999998754

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.96  E-value=9.4e-28  Score=271.16  Aligned_cols=450  Identities=16%  Similarity=0.138  Sum_probs=254.8

Q ss_pred             eEEEEEccccCccccccccccCCcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCcccc-CccccCCCCCc
Q 038658          140 RHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISEL-PDSIGDLRYLR  218 (831)
Q Consensus       140 r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~Lr  218 (831)
                      +++.+..+....+..  .+  .++++.|.+.+      |.+....+..+.++++|++|+|++|.++.+ |..|+.+++|+
T Consensus        34 ~~l~ls~~~L~~ip~--~~--~~~L~~L~Ls~------N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  103 (562)
T 3a79_B           34 SMVDYSNRNLTHVPK--DL--PPRTKALSLSQ------NSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLE  103 (562)
T ss_dssp             CEEECTTSCCCSCCT--TS--CTTCCEEECCS------SCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred             cEEEcCCCCCccCCC--CC--CCCcCEEECCC------CCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCC
Confidence            556655554443321  12  27888885543      445444445667999999999999999988 78899999999


Q ss_pred             eeecCCCCCCccchhhhccCCccEEeecCcCccc-cccccccCcccccccccCCCCCcccccCCCCCcccc--ccccceE
Q 038658          219 YLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLR-KLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCL--QTLCNFV  295 (831)
Q Consensus       219 ~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L--~~L~~~~  295 (831)
                      +|+|++|.++.+|..  .+++|++|++++|.... .+|..++++++|++|++++|.+..   ..++.+++|  ++|....
T Consensus       104 ~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~  178 (562)
T 3a79_B          104 YLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDL  178 (562)
T ss_dssp             EEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEE
T ss_pred             EEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeec
Confidence            999999999999987  89999999999987443 245789999999999999998433   245566666  7664332


Q ss_pred             ecCC-CCCcchhhhccc--cccCeee----EcccccccccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCc
Q 038658          296 VGKD-SGSRLRELKLLT--HLRGTLT----ISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNL  368 (831)
Q Consensus       296 ~~~~-~~~~~~~l~~L~--~L~~~l~----i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L  368 (831)
                      .... .......+..+.  .+.-.+.    ...+....+..+++|+.+++++|...       ..........+...++|
T Consensus       179 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~-------~~~l~~~~~~l~~l~~L  251 (562)
T 3a79_B          179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDEN-------CQRLMTFLSELTRGPTL  251 (562)
T ss_dssp             SSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTT-------HHHHHHHHHHHHSCSSC
T ss_pred             ccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccc-------cchHHHHHHHHhccCcc
Confidence            2110 122222233222  1110000    01122234556778888888776421       11112233345566788


Q ss_pred             cEEEEeeecCC-----CCCccCCCCCCCceeEEEEecCCCCCCCC-CC-----CCCCCcceEEeccccCceeeCccccCC
Q 038658          369 EQFFISGYGGT-----KFPIWLGDSSFSNLVTLKFEDCGMCTTLP-SV-----GQLPSLKHLAVRRMSRVRRLGSEFYGN  437 (831)
Q Consensus       369 ~~L~l~~~~~~-----~~p~~~~~~~~~~L~~L~l~~~~~~~~~~-~l-----~~l~~L~~L~L~~~~~l~~~~~~~~~~  437 (831)
                      +.+++.++...     .++.+..   .++|++|++++|.+.+.+| .+     ..++.|+.+++..+..  .++..... 
T Consensus       252 ~~L~L~~~~l~~~~~~~~~~~~~---~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~-  325 (562)
T 3a79_B          252 LNVTLQHIETTWKCSVKLFQFFW---PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALY-  325 (562)
T ss_dssp             EEEEEEEEEECHHHHHHHHHHHT---TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHH-
T ss_pred             eEEEecCCcCcHHHHHHHHHhhh---cccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhh-
Confidence            88888776543     2233332   3588999999888876666 33     3344444443333211  11000000 


Q ss_pred             CCCCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCCCCCCcccEEEEccccC---ccccCCC
Q 038658          438 DTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPEHLPALEMLVIGGCEE---LLVSITS  514 (831)
Q Consensus       438 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~---l~~~~~~  514 (831)
                                           .         ....++|++|++++|.-....++..+++|+.|++++|..   .+..+..
T Consensus       326 ---------------------~---------~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  375 (562)
T 3a79_B          326 ---------------------S---------VFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCST  375 (562)
T ss_dssp             ---------------------H---------HHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCS
T ss_pred             ---------------------h---------hhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcc
Confidence                                 0         001134555666554221111224455555555555542   1234556


Q ss_pred             CCccceEEEcCCCCccccccccccCCCCceeeccccchhhccCCCCCCCCCCcEEEEccCCCcchhcccCCcccccCCCc
Q 038658          515 LPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQDISSL  594 (831)
Q Consensus       515 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L  594 (831)
                      +++|+.|++++|........                      +.....+++|+.|+++++.....   .+...+..+++|
T Consensus       376 l~~L~~L~L~~N~l~~~~~~----------------------~~~~~~l~~L~~L~l~~N~l~~~---~~~~~~~~l~~L  430 (562)
T 3a79_B          376 LKRLQTLILQRNGLKNFFKV----------------------ALMTKNMSSLETLDVSLNSLNSH---AYDRTCAWAESI  430 (562)
T ss_dssp             CSSCCEEECCSSCCCBTTHH----------------------HHTTTTCTTCCEEECTTSCCBSC---CSSCCCCCCTTC
T ss_pred             cCCCCEEECCCCCcCCcccc----------------------hhhhcCCCCCCEEECCCCcCCCc---cChhhhcCcccC
Confidence            67777777777653321110                      00123466777777776663221   344445666777


Q ss_pred             cEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEeccCCCCcccccccCCCCCCCeEEEecCCCCccccCCCC--CCC
Q 038658          595 KRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSLLSLSSLREIEIYNCSSFVSFPEVAL--PSK  672 (831)
Q Consensus       595 ~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~l~~~~~--~~~  672 (831)
                      ++|+++++ .+.....         ..++++|++|++++|. ++.+|..+..+++|++|++++| .++.+|...+  +++
T Consensus       431 ~~L~l~~n-~l~~~~~---------~~l~~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~  498 (562)
T 3a79_B          431 LVLNLSSN-MLTGSVF---------RCLPPKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRLTS  498 (562)
T ss_dssp             CEEECCSS-CCCGGGG---------SSCCTTCSEEECCSSC-CCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTT
T ss_pred             CEEECCCC-CCCcchh---------hhhcCcCCEEECCCCc-CcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCC
Confidence            77777664 3321110         1222467777777765 3456666666777777777776 4556665322  566


Q ss_pred             ccEEEEecCCCC
Q 038658          673 VRSISIHRCDAL  684 (831)
Q Consensus       673 L~~L~l~~c~~l  684 (831)
                      |+.|++++|+..
T Consensus       499 L~~L~l~~N~~~  510 (562)
T 3a79_B          499 LQYIWLHDNPWD  510 (562)
T ss_dssp             CCCEECCSCCBC
T ss_pred             CCEEEecCCCcC
Confidence            666666665543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.96  E-value=1.8e-27  Score=258.85  Aligned_cols=430  Identities=19%  Similarity=0.202  Sum_probs=216.5

Q ss_pred             CccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcccccccccCCCCCcccccCCCCCccc
Q 038658          208 PDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTC  287 (831)
Q Consensus       208 p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~  287 (831)
                      |+.+ +.++||+|++++|.+..+|++++++++|++|++++|...+.+|..++++++|+.+++.+|..           .+
T Consensus         5 p~~~-~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~   72 (454)
T 1jl5_A            5 PRNV-SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQ   72 (454)
T ss_dssp             ------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HT
T ss_pred             cccc-ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cC
Confidence            4444 46889999999999999999999999999999999887778999999998874444444320           11


Q ss_pred             cccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCC
Q 038658          288 LQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKN  367 (831)
Q Consensus       288 L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  367 (831)
                      +++|+.   .                  ...+..+..    -.++|+.|++++|.....            +.   .+++
T Consensus        73 l~~L~l---~------------------~~~l~~lp~----~~~~L~~L~l~~n~l~~l------------p~---~~~~  112 (454)
T 1jl5_A           73 AHELEL---N------------------NLGLSSLPE----LPPHLESLVASCNSLTEL------------PE---LPQS  112 (454)
T ss_dssp             CSEEEC---T------------------TSCCSCCCS----CCTTCSEEECCSSCCSSC------------CC---CCTT
T ss_pred             CCEEEe---c------------------CCccccCCC----CcCCCCEEEccCCcCCcc------------cc---ccCC
Confidence            222200   0                  000000000    013556666655544221            11   1367


Q ss_pred             ccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCCCCCCCCCcceEEeccccCceeeCccccCCCCCCCCCCcc
Q 038658          368 LEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLE  447 (831)
Q Consensus       368 L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~  447 (831)
                      |+.|++++|....+|..     .++|++|++++|.+.+ +|.++.+++|++|+++++. +..++         ..+++|+
T Consensus       113 L~~L~l~~n~l~~l~~~-----~~~L~~L~L~~n~l~~-lp~~~~l~~L~~L~l~~N~-l~~lp---------~~~~~L~  176 (454)
T 1jl5_A          113 LKSLLVDNNNLKALSDL-----PPLLEYLGVSNNQLEK-LPELQNSSFLKIIDVDNNS-LKKLP---------DLPPSLE  176 (454)
T ss_dssp             CCEEECCSSCCSCCCSC-----CTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSC-CSCCC---------CCCTTCC
T ss_pred             CcEEECCCCccCcccCC-----CCCCCEEECcCCCCCC-CcccCCCCCCCEEECCCCc-CcccC---------CCccccc
Confidence            88888888877766643     2678888888887765 6678888888888888763 33322         1245888


Q ss_pred             eeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCCCCCCcccEEEEcccc--CccccCCCCCccceEEEcC
Q 038658          448 TLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPEHLPALEMLVIGGCE--ELLVSITSLPALSKLEIGG  525 (831)
Q Consensus       448 ~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~--~l~~~~~~l~~L~~L~l~~  525 (831)
                      .|++.+.. +..     .+ .++.+++|++|++++| .++ .+|...++|+.|++++|.  .++ .+..+++|++|++++
T Consensus       177 ~L~L~~n~-l~~-----l~-~~~~l~~L~~L~l~~N-~l~-~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~  246 (454)
T 1jl5_A          177 FIAAGNNQ-LEE-----LP-ELQNLPFLTAIYADNN-SLK-KLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADN  246 (454)
T ss_dssp             EEECCSSC-CSS-----CC-CCTTCTTCCEEECCSS-CCS-SCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCS
T ss_pred             EEECcCCc-CCc-----Cc-cccCCCCCCEEECCCC-cCC-cCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCC
Confidence            88887742 222     11 2668899999999984 676 577777889999998886  233 366788888898888


Q ss_pred             CCCccccccccccCCCCceeeccccchhhccCCCCCCCCCCcEEEEccCCCcchhcccCCcccccCCCccEEeeecCCCc
Q 038658          526 CKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTL  605 (831)
Q Consensus       526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l  605 (831)
                      |....                            ++..+++|+.|+++++.- +.   .+.    .+++|++|+++++ .+
T Consensus       247 N~l~~----------------------------l~~~~~~L~~L~l~~N~l-~~---l~~----~~~~L~~L~ls~N-~l  289 (454)
T 1jl5_A          247 NLLKT----------------------------LPDLPPSLEALNVRDNYL-TD---LPE----LPQSLTFLDVSEN-IF  289 (454)
T ss_dssp             SCCSS----------------------------CCSCCTTCCEEECCSSCC-SC---CCC----CCTTCCEEECCSS-CC
T ss_pred             CcCCc----------------------------ccccccccCEEECCCCcc-cc---cCc----ccCcCCEEECcCC-cc
Confidence            76322                            122357788888887762 21   221    2467788888774 45


Q ss_pred             ccchhhhhhhHhhhhcccCCccEEEeccCCCCcccccccCCCCCCCeEEEecCCCCccccCCCCCCCccEEEEecCCCCc
Q 038658          606 QSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSLLSLSSLREIEIYNCSSFVSFPEVALPSKVRSISIHRCDALK  685 (831)
Q Consensus       606 ~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~L~~L~l~~c~~l~  685 (831)
                      ..++           ..|++|++|++++|...+ ++..   .++|++|++++| .++.+|..  +++|++|++++|. ++
T Consensus       290 ~~l~-----------~~~~~L~~L~l~~N~l~~-i~~~---~~~L~~L~Ls~N-~l~~lp~~--~~~L~~L~L~~N~-l~  350 (454)
T 1jl5_A          290 SGLS-----------ELPPNLYYLNASSNEIRS-LCDL---PPSLEELNVSNN-KLIELPAL--PPRLERLIASFNH-LA  350 (454)
T ss_dssp             SEES-----------CCCTTCCEEECCSSCCSE-ECCC---CTTCCEEECCSS-CCSCCCCC--CTTCCEEECCSSC-CS
T ss_pred             Cccc-----------CcCCcCCEEECcCCcCCc-ccCC---cCcCCEEECCCC-cccccccc--CCcCCEEECCCCc-cc
Confidence            4432           233578888888776433 3311   247788888877 45556542  5777777777753 55


Q ss_pred             ccccccccCCCCCcCeEEEccCCCcceeccCCCCCCCceEEEecCCCCCccccccCccCCcccccCccccceEEEecCCC
Q 038658          686 SLPEAWMCDANLSLEILTISRCHSLTYIAEVQLPPSLKNVVIRNCDNVRTLTVEEGIQSSSSRRYTSSLLEHLHIESCPS  765 (831)
Q Consensus       686 ~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~l~~~~L~~L~i~~c~~  765 (831)
                      .+|.   .  +++|++|++++| .++.+|  ..|.++..|..  +.....+  |..        +++  |++|++++++-
T Consensus       351 ~lp~---~--l~~L~~L~L~~N-~l~~l~--~ip~~l~~L~~--n~~~~~i--~~~--------~~~--L~~L~ls~N~l  408 (454)
T 1jl5_A          351 EVPE---L--PQNLKQLHVEYN-PLREFP--DIPESVEDLRM--NSHLAEV--PEL--------PQN--LKQLHVETNPL  408 (454)
T ss_dssp             CCCC---C--CTTCCEEECCSS-CCSSCC--CCCTTCCEEEC--CC----------------------------------
T ss_pred             cccc---h--hhhccEEECCCC-CCCcCC--CChHHHHhhhh--ccccccc--ccc--------cCc--CCEEECCCCcC
Confidence            6665   2  677777777775 344433  23445555542  2222333  221        234  88888888542


Q ss_pred             cccccchhhhhhhhhccccCCCCCCcCeeEEccCCchhhhhhcC
Q 038658          766 LTCIFSKNELLATLESLEVGNLPPSLKSLEVLSCSKLESIAERL  809 (831)
Q Consensus       766 l~~i~~~~~~~~~l~~l~~~~l~~~L~~L~l~~~~~l~~l~~~~  809 (831)
                      .+                .+.+|++|+.|.+.+|..-..++.+.
T Consensus       409 ~~----------------~~~iP~sl~~L~~~~~~~~~~~~~~~  436 (454)
T 1jl5_A          409 RE----------------FPDIPESVEDLRMNSERVVDPYEFAH  436 (454)
T ss_dssp             --------------------------------------------
T ss_pred             Cc----------------cccchhhHhheeCcCcccCCccccCH
Confidence            21                12356778888887776544444333

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.94  E-value=8.1e-27  Score=256.99  Aligned_cols=100  Identities=21%  Similarity=0.216  Sum_probs=68.3

Q ss_pred             cceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCC-cc-chhhhccCCccEEeecCcCccccccccccCcccccccc
Q 038658          192 QRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIR-TL-PESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLN  268 (831)
Q Consensus       192 ~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~-~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~  268 (831)
                      ++|++|+|++|.++.+ |..|+++++|++|++++|.+. .+ |..+.++++|++|++++|......|..++++++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            5677777777777766 666777777777777777765 44 45677777777777777765555566777777777777


Q ss_pred             cCCCCCcccccCC--CCCccccccc
Q 038658          269 NSNTDSLEEMPLG--IGKLTCLQTL  291 (831)
Q Consensus       269 l~~~~~~~~~p~~--~~~L~~L~~L  291 (831)
                      +++|...+.+|..  ++++++|++|
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L  134 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEML  134 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEE
T ss_pred             CCCCCCCccccCcccccCcccCCEE
Confidence            7777644434433  5666666655

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.94  E-value=1.1e-25  Score=247.76  Aligned_cols=95  Identities=19%  Similarity=0.308  Sum_probs=53.1

Q ss_pred             CcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcccccccccC
Q 038658          191 LQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNS  270 (831)
Q Consensus       191 l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~  270 (831)
                      +++++.|+++++.+..+|. +..+++|++|++++|.++.+|. ++++++|++|++++|. +..+|. ++++++|++|+++
T Consensus        45 l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~  120 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ-IADITP-LANLTNLTGLTLF  120 (466)
T ss_dssp             HHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECC
T ss_pred             hccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCc-cccChh-hcCCCCCCEEECC
Confidence            4455666666666655542 5556666666666666665554 6666666666666654 333333 6666666666666


Q ss_pred             CCCCcccccCCCCCccccccc
Q 038658          271 NTDSLEEMPLGIGKLTCLQTL  291 (831)
Q Consensus       271 ~~~~~~~~p~~~~~L~~L~~L  291 (831)
                      +|. +..+|. ++++++|++|
T Consensus       121 ~n~-l~~~~~-~~~l~~L~~L  139 (466)
T 1o6v_A          121 NNQ-ITDIDP-LKNLTNLNRL  139 (466)
T ss_dssp             SSC-CCCCGG-GTTCTTCSEE
T ss_pred             CCC-CCCChH-HcCCCCCCEE
Confidence            665 333332 4444444444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.94  E-value=1.1e-26  Score=255.83  Aligned_cols=94  Identities=19%  Similarity=0.155  Sum_probs=79.3

Q ss_pred             EEEEeCCCCccccCccccCCCCCceeecCCCCCCcc-chhhhccCCccEEeecCcCccccc-cccccCcccccccccCCC
Q 038658          195 RVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTL-PESVNKLYNLHTLSLEGCRGLRKL-CAGMGNLIKLHHLNNSNT  272 (831)
Q Consensus       195 ~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~l-p~~i~~L~~L~~L~l~~~  272 (831)
                      +.++.+++.++.+|. +.  ++|++|+|++|.++.+ |..++++++|++|++++|.....+ |..+.++++|++|++++|
T Consensus        13 ~~~~c~~~~l~~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n   89 (455)
T 3v47_A           13 YNAICINRGLHQVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN   89 (455)
T ss_dssp             TEEECCSSCCSSCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred             cccCcCCCCcccCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence            457788888999987 43  8999999999999977 778999999999999998765555 556999999999999999


Q ss_pred             CCcccccCCCCCccccccc
Q 038658          273 DSLEEMPLGIGKLTCLQTL  291 (831)
Q Consensus       273 ~~~~~~p~~~~~L~~L~~L  291 (831)
                      .+.+..|..++++++|++|
T Consensus        90 ~l~~~~~~~~~~l~~L~~L  108 (455)
T 3v47_A           90 QFLQLETGAFNGLANLEVL  108 (455)
T ss_dssp             TTCEECTTTTTTCTTCCEE
T ss_pred             ccCccChhhccCcccCCEE
Confidence            8555557778888888777

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.94  E-value=3e-26  Score=249.52  Aligned_cols=358  Identities=16%  Similarity=0.158  Sum_probs=222.7

Q ss_pred             cccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcccc
Q 038658          185 LPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKL  264 (831)
Q Consensus       185 ~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L  264 (831)
                      +..+..+++|++|++++|.++.+| +++.+++|++|++++|.++.+|  ++.+++|++|++++|. +..+|  ++++++|
T Consensus        35 ~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~L  108 (457)
T 3bz5_A           35 TISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTKL  108 (457)
T ss_dssp             EEEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTTC
T ss_pred             ccChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee--cCCCCcC
Confidence            344557788888888888888876 6888888888888888888876  7888888888888876 44454  7888888


Q ss_pred             cccccCCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCC
Q 038658          265 HHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNST  344 (831)
Q Consensus       265 ~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~  344 (831)
                      ++|++++|. +..+|  ++.+++|++|...                     .+.+..   ..+..+++|+.|+++.|...
T Consensus       109 ~~L~L~~N~-l~~l~--~~~l~~L~~L~l~---------------------~N~l~~---l~l~~l~~L~~L~l~~n~~~  161 (457)
T 3bz5_A          109 TYLNCDTNK-LTKLD--VSQNPLLTYLNCA---------------------RNTLTE---IDVSHNTQLTELDCHLNKKI  161 (457)
T ss_dssp             CEEECCSSC-CSCCC--CTTCTTCCEEECT---------------------TSCCSC---CCCTTCTTCCEEECTTCSCC
T ss_pred             CEEECCCCc-CCeec--CCCCCcCCEEECC---------------------CCccce---eccccCCcCCEEECCCCCcc
Confidence            888888887 44454  7777777777211                     111111   12445566666666555322


Q ss_pred             CCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCCCCCCCCCcceEEeccc
Q 038658          345 DGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHLAVRRM  424 (831)
Q Consensus       345 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~  424 (831)
                      ..           .  .+..+++|+.|++++|.+..+|  +.  .+++|+.|++++|.+.+.  .++.+++|+.|+++++
T Consensus       162 ~~-----------~--~~~~l~~L~~L~ls~n~l~~l~--l~--~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N  222 (457)
T 3bz5_A          162 TK-----------L--DVTPQTQLTTLDCSFNKITELD--VS--QNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSN  222 (457)
T ss_dssp             CC-----------C--CCTTCTTCCEEECCSSCCCCCC--CT--TCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSS
T ss_pred             cc-----------c--ccccCCcCCEEECCCCccceec--cc--cCCCCCEEECcCCcCCee--ccccCCCCCEEECcCC
Confidence            11           0  2444566666666666665555  22  256666666666655443  3555556666655543


Q ss_pred             cCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCCCCCCcccEEEEcc
Q 038658          425 SRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPEHLPALEMLVIGG  504 (831)
Q Consensus       425 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~  504 (831)
                      . +                              ..     .+  ++.+++|+.|++++ +.+++..+..+++|+.|++++
T Consensus       223 ~-l------------------------------~~-----ip--~~~l~~L~~L~l~~-N~l~~~~~~~l~~L~~L~l~~  263 (457)
T 3bz5_A          223 K-L------------------------------TE-----ID--VTPLTQLTYFDCSV-NPLTELDVSTLSKLTTLHCIQ  263 (457)
T ss_dssp             C-C------------------------------SC-----CC--CTTCTTCSEEECCS-SCCSCCCCTTCTTCCEEECTT
T ss_pred             c-c------------------------------cc-----cC--ccccCCCCEEEeeC-CcCCCcCHHHCCCCCEEeccC
Confidence            2 1                              11     01  34577888888887 466644445677777777654


Q ss_pred             ccCccccCCCCCccceEEEcCCCCccccccccccCCCCceeeccccchhhccCCCCCCCCCCcEEEEccCCCcchhcccC
Q 038658          505 CEELLVSITSLPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRH  584 (831)
Q Consensus       505 ~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~  584 (831)
                      +           +|+.|++++|.......                          ...+++|+.|++++|..+..   .+
T Consensus       264 n-----------~L~~L~l~~n~~~~~~~--------------------------~~~l~~L~~L~Ls~n~~l~~---l~  303 (457)
T 3bz5_A          264 T-----------DLLEIDLTHNTQLIYFQ--------------------------AEGCRKIKELDVTHNTQLYL---LD  303 (457)
T ss_dssp             C-----------CCSCCCCTTCTTCCEEE--------------------------CTTCTTCCCCCCTTCTTCCE---EE
T ss_pred             C-----------CCCEEECCCCccCCccc--------------------------ccccccCCEEECCCCcccce---ec
Confidence            3           45666777766332111                          13467888888888876654   22


Q ss_pred             CcccccCCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEeccCCCCcccccccCCCCCCCeEEEecCCCCccc
Q 038658          585 NGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSLLSLSSLREIEIYNCSSFVSF  664 (831)
Q Consensus       585 ~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~l  664 (831)
                          ...++|+.|++++|                     ++|++|++++|...+ ++  +..+++|+.|++++| .++.+
T Consensus       304 ----~~~~~L~~L~l~~~---------------------~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N-~l~~l  354 (457)
T 3bz5_A          304 ----CQAAGITELDLSQN---------------------PKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNA-HIQDF  354 (457)
T ss_dssp             ----CTTCCCSCCCCTTC---------------------TTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSS-CCCBC
T ss_pred             ----cCCCcceEechhhc---------------------ccCCEEECCCCcccc-cc--cccCCcCcEEECCCC-CCCCc
Confidence                24466676766665                     368899999988655 43  888999999999998 55554


Q ss_pred             cCCCCCCCccEEEEecCCCCcccccccccCCCCCcCeEEEccCCCcceecc
Q 038658          665 PEVALPSKVRSISIHRCDALKSLPEAWMCDANLSLEILTISRCHSLTYIAE  715 (831)
Q Consensus       665 ~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~  715 (831)
                      +      +|..|.++++. +...+    .  +.+|+.++++++.--..+|.
T Consensus       355 ~------~L~~L~l~~n~-l~g~~----~--~~~l~~l~l~~N~l~g~ip~  392 (457)
T 3bz5_A          355 S------SVGKIPALNNN-FEAEG----Q--TITMPKETLTNNSLTIAVSP  392 (457)
T ss_dssp             T------TGGGSSGGGTS-EEEEE----E--EEECCCBCCBTTBEEEECCT
T ss_pred             c------ccccccccCCc-EEecc----e--eeecCccccccCcEEEEcCh
Confidence            3      44444444422 11111    1  45566677776533334543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.93  E-value=4.8e-25  Score=242.62  Aligned_cols=118  Identities=21%  Similarity=0.336  Sum_probs=93.2

Q ss_pred             cCCcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCC
Q 038658          160 NIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYN  239 (831)
Q Consensus       160 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~  239 (831)
                      .+++++.|.+.+..      + ..+ +.+..+++|++|++++|.++.+|. ++.+++|++|++++|.+..+|. ++++++
T Consensus        44 ~l~~l~~L~l~~~~------i-~~l-~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~  113 (466)
T 1o6v_A           44 DLDQVTTLQADRLG------I-KSI-DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTN  113 (466)
T ss_dssp             HHHTCCEEECCSSC------C-CCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTT
T ss_pred             HhccccEEecCCCC------C-ccC-cchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCC
Confidence            34566777554322      1 122 345688999999999999999876 9999999999999999998877 999999


Q ss_pred             ccEEeecCcCccccccccccCcccccccccCCCCCcccccCCCCCccccccc
Q 038658          240 LHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTL  291 (831)
Q Consensus       240 L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L  291 (831)
                      |++|++++|. +..+|. ++++++|++|++++|. +..+| .++.+++|+.|
T Consensus       114 L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L  161 (466)
T 1o6v_A          114 LTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQL  161 (466)
T ss_dssp             CCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEEE-ECCCG-GGTTCTTCSEE
T ss_pred             CCEEECCCCC-CCCChH-HcCCCCCCEEECCCCc-cCCCh-hhccCCcccEe
Confidence            9999999975 556665 8999999999999997 55555 36777777766

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.93  E-value=4.7e-25  Score=240.08  Aligned_cols=226  Identities=20%  Similarity=0.180  Sum_probs=159.3

Q ss_pred             ccccCCcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhc
Q 038658          157 DLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNK  236 (831)
Q Consensus       157 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~  236 (831)
                      .+.++++|++|.+.+      +.+.+ +| .+..+++|++|++++|.++.+|  ++.+++|++|++++|.++.+|  +++
T Consensus        37 ~~~~l~~L~~L~Ls~------n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~  104 (457)
T 3bz5_A           37 SEEQLATLTSLDCHN------SSITD-MT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTP  104 (457)
T ss_dssp             EHHHHTTCCEEECCS------SCCCC-CT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTT
T ss_pred             ChhHcCCCCEEEccC------CCccc-Ch-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCC
Confidence            456678888886543      23332 33 5668899999999999988886  888999999999999998885  889


Q ss_pred             cCCccEEeecCcCccccccccccCcccccccccCCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCe
Q 038658          237 LYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGT  316 (831)
Q Consensus       237 L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~  316 (831)
                      +++|++|++++|. +..+|  ++.+++|++|++++|. +..++  ++++++|++|......                   
T Consensus       105 l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~-------------------  159 (457)
T 3bz5_A          105 LTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNK-------------------  159 (457)
T ss_dssp             CTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCS-------------------
T ss_pred             CCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCC-------------------
Confidence            9999999999975 45565  8899999999999988 54454  7788888877321110                   


Q ss_pred             eeEcccccccccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEE
Q 038658          317 LTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTL  396 (831)
Q Consensus       317 l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L  396 (831)
                       .+..   ..+..+++|+.|++++|.....             . +..+++|+.|++++|.+..++  +.  .+++|+.|
T Consensus       160 -~~~~---~~~~~l~~L~~L~ls~n~l~~l-------------~-l~~l~~L~~L~l~~N~l~~~~--l~--~l~~L~~L  217 (457)
T 3bz5_A          160 -KITK---LDVTPQTQLTTLDCSFNKITEL-------------D-VSQNKLLNRLNCDTNNITKLD--LN--QNIQLTFL  217 (457)
T ss_dssp             -CCCC---CCCTTCTTCCEEECCSSCCCCC-------------C-CTTCTTCCEEECCSSCCSCCC--CT--TCTTCSEE
T ss_pred             -cccc---cccccCCcCCEEECCCCcccee-------------c-cccCCCCCEEECcCCcCCeec--cc--cCCCCCEE
Confidence             0111   1355667788888877765321             1 556678888888888877764  33  37888888


Q ss_pred             EEecCCCCCCCCCCCCCCCcceEEeccccCceeeCccccCCCCCCCCCCcceeecc
Q 038658          397 KFEDCGMCTTLPSVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFE  452 (831)
Q Consensus       397 ~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~  452 (831)
                      ++++|.+.+ +| ++.+++|+.|+++++. +..++        ...+++|+.|.+.
T Consensus       218 ~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~-l~~~~--------~~~l~~L~~L~l~  262 (457)
T 3bz5_A          218 DCSSNKLTE-ID-VTPLTQLTYFDCSVNP-LTELD--------VSTLSKLTTLHCI  262 (457)
T ss_dssp             ECCSSCCSC-CC-CTTCTTCSEEECCSSC-CSCCC--------CTTCTTCCEEECT
T ss_pred             ECcCCcccc-cC-ccccCCCCEEEeeCCc-CCCcC--------HHHCCCCCEEecc
Confidence            888888776 55 7788888888888763 22221        2336666666553

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.91  E-value=1.1e-23  Score=222.72  Aligned_cols=80  Identities=24%  Similarity=0.429  Sum_probs=62.6

Q ss_pred             CCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCccccccccc
Q 038658          190 KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNN  269 (831)
Q Consensus       190 ~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l  269 (831)
                      .+++|++|+++++.+..+|. +..+++|++|++++|.++.+|. +..+++|++|++++|. +..+| .++.+++|++|++
T Consensus        42 ~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~-~~~~l~~L~~L~l  117 (347)
T 4fmz_A           42 ELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK-ITDIS-ALQNLTNLRELYL  117 (347)
T ss_dssp             HHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSEEEC
T ss_pred             hcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCc-ccCch-HHcCCCcCCEEEC
Confidence            66778888888888887764 7788888888888888888776 8888888888888874 45554 4778888888888


Q ss_pred             CCCC
Q 038658          270 SNTD  273 (831)
Q Consensus       270 ~~~~  273 (831)
                      ++|.
T Consensus       118 ~~n~  121 (347)
T 4fmz_A          118 NEDN  121 (347)
T ss_dssp             TTSC
T ss_pred             cCCc
Confidence            7776

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.91  E-value=1.7e-23  Score=224.84  Aligned_cols=90  Identities=18%  Similarity=0.183  Sum_probs=67.7

Q ss_pred             CCcceEEEEeCCCCccccCcc-ccCCCCCceeecCCCCCCccch-hhhccCCccEEeecCcCccccccccccCccccccc
Q 038658          190 KLQRLRVFSLCGYWISELPDS-IGDLRYLRYLNLSGTQIRTLPE-SVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHL  267 (831)
Q Consensus       190 ~l~~L~~L~L~~~~i~~lp~~-~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L  267 (831)
                      .++++++|+++++.++.+|.. +..+++|++|++++|.++.+|. .++.+++|++|++++|......|..++++++|++|
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            567788888888888888765 4778888888888888887754 77888888888888876444445557888888888


Q ss_pred             ccCCCCCcccccC
Q 038658          268 NNSNTDSLEEMPL  280 (831)
Q Consensus       268 ~l~~~~~~~~~p~  280 (831)
                      ++++|. +..+|.
T Consensus       123 ~L~~n~-l~~l~~  134 (390)
T 3o6n_A          123 VLERND-LSSLPR  134 (390)
T ss_dssp             ECCSSC-CCCCCT
T ss_pred             ECCCCc-cCcCCH
Confidence            888776 444543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.91  E-value=2e-23  Score=231.07  Aligned_cols=105  Identities=24%  Similarity=0.311  Sum_probs=72.9

Q ss_pred             ccccccCCcceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCCcc-chhhhccCCccEEeecCcCccccccc-cccC
Q 038658          184 ILPKLFKLQRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTL-PESVNKLYNLHTLSLEGCRGLRKLCA-GMGN  260 (831)
Q Consensus       184 ~~~~~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~-~i~~  260 (831)
                      +|..+.  +.+++|+|++|.++.+ |..|.++++|++|+|++|.++.+ |..++++++|++|++++|. +..+|. .+++
T Consensus        26 ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~  102 (477)
T 2id5_A           26 VPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTG  102 (477)
T ss_dssp             CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTT
T ss_pred             CCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccC
Confidence            444443  4677888888888777 56778888888888888888766 6677888888888888765 445554 3677


Q ss_pred             cccccccccCCCCCcccccCCCCCccccccc
Q 038658          261 LIKLHHLNNSNTDSLEEMPLGIGKLTCLQTL  291 (831)
Q Consensus       261 L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L  291 (831)
                      +++|++|++++|.+....|..++++++|++|
T Consensus       103 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  133 (477)
T 2id5_A          103 LSNLTKLDISENKIVILLDYMFQDLYNLKSL  133 (477)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCccccCChhHccccccCCEE
Confidence            8888888888877444444455555555555

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.90  E-value=1.9e-23  Score=224.46  Aligned_cols=302  Identities=17%  Similarity=0.126  Sum_probs=222.6

Q ss_pred             cCCcceEEccccccCCCccccccccccccc-CCcceEEEEeCCCCccccC-ccccCCCCCceeecCCCCCCccc-hhhhc
Q 038658          160 NIQHLRTFLPVCLSNSSQGFLAHSILPKLF-KLQRLRVFSLCGYWISELP-DSIGDLRYLRYLNLSGTQIRTLP-ESVNK  236 (831)
Q Consensus       160 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~lp-~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~  236 (831)
                      .+++++.+.+.+.       ....+|+.++ .+++|++|++++|.++.++ ..|+.+++|++|++++|.++.+| ..+++
T Consensus        43 ~l~~l~~l~l~~~-------~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  115 (390)
T 3o6n_A           43 TLNNQKIVTFKNS-------TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN  115 (390)
T ss_dssp             GGCCCSEEEEESC-------EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             ccCCceEEEecCC-------chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcC
Confidence            4567777755432       2345676665 8899999999999998885 58899999999999999999775 55799


Q ss_pred             cCCccEEeecCcCcccccccc-ccCcccccccccCCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccC
Q 038658          237 LYNLHTLSLEGCRGLRKLCAG-MGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRG  315 (831)
Q Consensus       237 L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~  315 (831)
                      +++|++|++++|. +..+|.. ++++++|++|++++|.+....|..++.+++|++|....                    
T Consensus       116 l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~--------------------  174 (390)
T 3o6n_A          116 VPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS--------------------  174 (390)
T ss_dssp             CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCS--------------------
T ss_pred             CCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCC--------------------
Confidence            9999999999975 5677766 58999999999999985444455688899998883211                    


Q ss_pred             eeeEcccccccccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeE
Q 038658          316 TLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVT  395 (831)
Q Consensus       316 ~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~  395 (831)
                          ..+....+..+++|+.|++++|...                .+....+|+.|+++++.+..+|...    +++|+.
T Consensus       175 ----n~l~~~~~~~l~~L~~L~l~~n~l~----------------~~~~~~~L~~L~l~~n~l~~~~~~~----~~~L~~  230 (390)
T 3o6n_A          175 ----NRLTHVDLSLIPSLFHANVSYNLLS----------------TLAIPIAVEELDASHNSINVVRGPV----NVELTI  230 (390)
T ss_dssp             ----SCCSBCCGGGCTTCSEEECCSSCCS----------------EEECCSSCSEEECCSSCCCEEECCC----CSSCCE
T ss_pred             ----CcCCccccccccccceeeccccccc----------------ccCCCCcceEEECCCCeeeeccccc----cccccE
Confidence                1111223455677788887665432                2334568899999998888776543    578999


Q ss_pred             EEEecCCCCCCCCCCCCCCCcceEEeccccCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcc
Q 038658          396 LKFEDCGMCTTLPSVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKL  475 (831)
Q Consensus       396 L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L  475 (831)
                      |++++|.+.. .+.++.+++|+.|+++++......+..+      ..+++|+.|++.+. .+..+     +.....+++|
T Consensus       231 L~l~~n~l~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~~------~~l~~L~~L~L~~n-~l~~~-----~~~~~~l~~L  297 (390)
T 3o6n_A          231 LKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPF------VKMQRLERLYISNN-RLVAL-----NLYGQPIPTL  297 (390)
T ss_dssp             EECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEEESGGG------TTCSSCCEEECCSS-CCCEE-----ECSSSCCTTC
T ss_pred             EECCCCCCcc-cHHHcCCCCccEEECCCCcCCCcChhHc------cccccCCEEECCCC-cCccc-----CcccCCCCCC
Confidence            9999998765 3677888999999998875333323222      23789999999874 23222     1224578999


Q ss_pred             cEEeEcCCcCcccCCCC---CCCcccEEEEccccCccccCCCCCccceEEEcCCCC
Q 038658          476 RELEVIGCSKLKGTFPE---HLPALEMLVIGGCEELLVSITSLPALSKLEIGGCKK  528 (831)
Q Consensus       476 ~~L~l~~c~~l~~~~p~---~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~  528 (831)
                      ++|++++| .++ .+|.   .+++|+.|++++|......+..+++|+.|++++|+.
T Consensus       298 ~~L~L~~n-~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~  351 (390)
T 3o6n_A          298 KVLDLSHN-HLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDW  351 (390)
T ss_dssp             CEEECCSS-CCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCE
T ss_pred             CEEECCCC-cce-ecCccccccCcCCEEECCCCccceeCchhhccCCEEEcCCCCc
Confidence            99999995 676 6664   568999999999996665678899999999999984

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.90  E-value=1.6e-22  Score=213.84  Aligned_cols=123  Identities=20%  Similarity=0.318  Sum_probs=93.0

Q ss_pred             cccccCCcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhh
Q 038658          156 EDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVN  235 (831)
Q Consensus       156 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~  235 (831)
                      ..+..+++|+.|.+.+..      + ..+ +.+..+++|++|++++|.++.+|. +..+++|++|++++|.++.+| .+.
T Consensus        38 ~~~~~l~~L~~L~l~~~~------i-~~~-~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~  107 (347)
T 4fmz_A           38 VTQEELESITKLVVAGEK------V-ASI-QGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQ  107 (347)
T ss_dssp             ECHHHHTTCSEEECCSSC------C-CCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGT
T ss_pred             ccchhcccccEEEEeCCc------c-ccc-hhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHc
Confidence            344567788888665432      1 122 346689999999999999999876 899999999999999999886 699


Q ss_pred             ccCCccEEeecCcCccccccccccCcccccccccCCCCCcccccCCCCCccccccc
Q 038658          236 KLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTL  291 (831)
Q Consensus       236 ~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L  291 (831)
                      ++++|++|++++|. +..+|. +..+++|++|++++|.....++ .++.+++|++|
T Consensus       108 ~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L  160 (347)
T 4fmz_A          108 NLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYL  160 (347)
T ss_dssp             TCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEE
T ss_pred             CCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEE
Confidence            99999999999976 556665 8899999999999986444433 24444444433

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.89  E-value=1.3e-22  Score=224.48  Aligned_cols=224  Identities=19%  Similarity=0.148  Sum_probs=163.9

Q ss_pred             CcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCCccch-hhhccCC
Q 038658          162 QHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTLPE-SVNKLYN  239 (831)
Q Consensus       162 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~  239 (831)
                      ++++.|.+.      .+.+....+..+..+++|++|+|++|.++.+ |..|+++++|++|+|++|.++.+|. .+.++++
T Consensus        32 ~~l~~L~L~------~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  105 (477)
T 2id5_A           32 TETRLLDLG------KNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN  105 (477)
T ss_dssp             TTCSEEECC------SSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTT
T ss_pred             CCCcEEECC------CCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCC
Confidence            578888553      3445444455666999999999999999987 8899999999999999999999986 4799999


Q ss_pred             ccEEeecCcCccccccccccCcccccccccCCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeE
Q 038658          240 LHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTI  319 (831)
Q Consensus       240 L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i  319 (831)
                      |++|++++|......|..+..+++|++|++++|......|..++.+++|++|...                     ...+
T Consensus       106 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~---------------------~n~l  164 (477)
T 2id5_A          106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLE---------------------KCNL  164 (477)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEE---------------------SCCC
T ss_pred             CCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECC---------------------CCcC
Confidence            9999999988666677889999999999999998555556678888888888221                     1223


Q ss_pred             cccccccccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecC-CCCCccCCCCCCCceeEEEE
Q 038658          320 SKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGG-TKFPIWLGDSSFSNLVTLKF  398 (831)
Q Consensus       320 ~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~p~~~~~~~~~~L~~L~l  398 (831)
                      ..+....+..+++|+.|++++|.....           ....+..+++|+.|+++++.. ..+|.....  ..+|+.|++
T Consensus       165 ~~~~~~~l~~l~~L~~L~l~~n~i~~~-----------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--~~~L~~L~l  231 (477)
T 2id5_A          165 TSIPTEALSHLHGLIVLRLRHLNINAI-----------RDYSFKRLYRLKVLEISHWPYLDTMTPNCLY--GLNLTSLSI  231 (477)
T ss_dssp             SSCCHHHHTTCTTCCEEEEESCCCCEE-----------CTTCSCSCTTCCEEEEECCTTCCEECTTTTT--TCCCSEEEE
T ss_pred             cccChhHhcccCCCcEEeCCCCcCcEe-----------ChhhcccCcccceeeCCCCccccccCccccc--CccccEEEC
Confidence            333445567778888888877664321           223466677788888877653 334444433  347888888


Q ss_pred             ecCCCCCCCC-CCCCCCCcceEEecccc
Q 038658          399 EDCGMCTTLP-SVGQLPSLKHLAVRRMS  425 (831)
Q Consensus       399 ~~~~~~~~~~-~l~~l~~L~~L~L~~~~  425 (831)
                      ++|.+....+ .+..+++|+.|+++++.
T Consensus       232 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  259 (477)
T 2id5_A          232 THCNLTAVPYLAVRHLVYLRFLNLSYNP  259 (477)
T ss_dssp             ESSCCCSCCHHHHTTCTTCCEEECCSSC
T ss_pred             cCCcccccCHHHhcCccccCeeECCCCc
Confidence            8777653332 46677777777777654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=6.9e-23  Score=232.43  Aligned_cols=302  Identities=17%  Similarity=0.120  Sum_probs=224.6

Q ss_pred             cCCcceEEccccccCCCccccccccccccc-CCcceEEEEeCCCCccccC-ccccCCCCCceeecCCCCCCccch-hhhc
Q 038658          160 NIQHLRTFLPVCLSNSSQGFLAHSILPKLF-KLQRLRVFSLCGYWISELP-DSIGDLRYLRYLNLSGTQIRTLPE-SVNK  236 (831)
Q Consensus       160 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~lp-~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~  236 (831)
                      .+.+++.+.+.+.       ....+|+.++ .+++|++|+|++|.++.+| ..|+.+++|++|+|++|.++.+|+ .+++
T Consensus        49 ~l~~l~~l~l~~~-------~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  121 (597)
T 3oja_B           49 TLNNQKIVTFKNS-------TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN  121 (597)
T ss_dssp             GGCCCSEEEESSC-------EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             cCCCceEEEeeCC-------CCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcC
Confidence            3567777754332       2345677766 8999999999999999884 588999999999999999998865 5699


Q ss_pred             cCCccEEeecCcCcccccccc-ccCcccccccccCCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccC
Q 038658          237 LYNLHTLSLEGCRGLRKLCAG-MGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRG  315 (831)
Q Consensus       237 L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~  315 (831)
                      +++|++|++++|. +..+|.. ++++++|++|++++|.+.+..|..++.+++|++|....                    
T Consensus       122 l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~--------------------  180 (597)
T 3oja_B          122 VPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS--------------------  180 (597)
T ss_dssp             CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTT--------------------
T ss_pred             CCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcC--------------------
Confidence            9999999999986 5567665 68999999999999985555556699999999883211                    


Q ss_pred             eeeEcccccccccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeE
Q 038658          316 TLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVT  395 (831)
Q Consensus       316 ~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~  395 (831)
                          ..+....+..+++|+.|++++|...                .+..+.+|+.|++++|.+..+|..+    .++|+.
T Consensus       181 ----N~l~~~~~~~l~~L~~L~l~~n~l~----------------~l~~~~~L~~L~ls~n~l~~~~~~~----~~~L~~  236 (597)
T 3oja_B          181 ----NRLTHVDLSLIPSLFHANVSYNLLS----------------TLAIPIAVEELDASHNSINVVRGPV----NVELTI  236 (597)
T ss_dssp             ----SCCSBCCGGGCTTCSEEECCSSCCS----------------EEECCTTCSEEECCSSCCCEEECSC----CSCCCE
T ss_pred             ----CCCCCcChhhhhhhhhhhcccCccc----------------cccCCchhheeeccCCccccccccc----CCCCCE
Confidence                1111123445677888887665432                2344568899999998887776654    468999


Q ss_pred             EEEecCCCCCCCCCCCCCCCcceEEeccccCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcc
Q 038658          396 LKFEDCGMCTTLPSVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKL  475 (831)
Q Consensus       396 L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L  475 (831)
                      |++++|.+.+ .+.++.+++|+.|+++++......+..+.      .+++|+.|++.+. .+..+     +.....+++|
T Consensus       237 L~L~~n~l~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~------~l~~L~~L~Ls~N-~l~~l-----~~~~~~l~~L  303 (597)
T 3oja_B          237 LKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFV------KMQRLERLYISNN-RLVAL-----NLYGQPIPTL  303 (597)
T ss_dssp             EECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEEESGGGT------TCSSCCEEECTTS-CCCEE-----ECSSSCCTTC
T ss_pred             EECCCCCCCC-ChhhccCCCCCEEECCCCccCCCCHHHhc------CccCCCEEECCCC-CCCCC-----CcccccCCCC
Confidence            9999998765 36788889999999988654333333322      3889999999874 23322     2224578999


Q ss_pred             cEEeEcCCcCcccCCCC---CCCcccEEEEccccCccccCCCCCccceEEEcCCCC
Q 038658          476 RELEVIGCSKLKGTFPE---HLPALEMLVIGGCEELLVSITSLPALSKLEIGGCKK  528 (831)
Q Consensus       476 ~~L~l~~c~~l~~~~p~---~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~  528 (831)
                      +.|++++| .++ .+|.   .+++|+.|++++|......+..+++|+.|++++|+.
T Consensus       304 ~~L~Ls~N-~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~  357 (597)
T 3oja_B          304 KVLDLSHN-HLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDW  357 (597)
T ss_dssp             CEEECCSS-CCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCE
T ss_pred             cEEECCCC-CCC-ccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCC
Confidence            99999995 676 6665   578999999999996666678899999999999983

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=7.9e-22  Score=223.70  Aligned_cols=89  Identities=18%  Similarity=0.193  Sum_probs=62.9

Q ss_pred             CCcceEEEEeCCCCccccCcc-ccCCCCCceeecCCCCCCccch-hhhccCCccEEeecCcCccccccccccCccccccc
Q 038658          190 KLQRLRVFSLCGYWISELPDS-IGDLRYLRYLNLSGTQIRTLPE-SVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHL  267 (831)
Q Consensus       190 ~l~~L~~L~L~~~~i~~lp~~-~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L  267 (831)
                      .+.++++|++++|.+..+|.. +..+++|++|+|++|.++.+|. .++.+++|++|++++|......|..++++++|++|
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            456778888888887777654 4677888888888888776653 77778888888888776444444456777777777


Q ss_pred             ccCCCCCccccc
Q 038658          268 NNSNTDSLEEMP  279 (831)
Q Consensus       268 ~l~~~~~~~~~p  279 (831)
                      ++++|. +..+|
T Consensus       129 ~L~~n~-l~~l~  139 (597)
T 3oja_B          129 VLERND-LSSLP  139 (597)
T ss_dssp             ECCSSC-CCCCC
T ss_pred             EeeCCC-CCCCC
Confidence            777776 44444

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.87  E-value=5.8e-22  Score=206.26  Aligned_cols=216  Identities=22%  Similarity=0.343  Sum_probs=154.5

Q ss_pred             CCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCccccccccc
Q 038658          190 KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNN  269 (831)
Q Consensus       190 ~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l  269 (831)
                      ...++++|+|++|.++.+|..++++++|++|+|++|.++.+|..++++++|++|++++|. +..+|..++++++|++|++
T Consensus        79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSI  157 (328)
T ss_dssp             TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEE
T ss_pred             cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEEC
Confidence            457899999999999999999999999999999999999999999999999999999986 5589999999999999999


Q ss_pred             CCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCCh
Q 038658          270 SNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSL  349 (831)
Q Consensus       270 ~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~  349 (831)
                      ++|...+.+|..++...-.                                    ..+.++++|+.|++++|....    
T Consensus       158 ~~n~~~~~~p~~~~~~~~~------------------------------------~~~~~l~~L~~L~L~~n~l~~----  197 (328)
T 4fcg_A          158 RACPELTELPEPLASTDAS------------------------------------GEHQGLVNLQSLRLEWTGIRS----  197 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-C------------------------------------CCEEESTTCCEEEEEEECCCC----
T ss_pred             CCCCCccccChhHhhccch------------------------------------hhhccCCCCCEEECcCCCcCc----
Confidence            9988788888766431100                                    113344566666776665431    


Q ss_pred             hhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCC-CCCCCCCcceEEeccccCce
Q 038658          350 REAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLP-SVGQLPSLKHLAVRRMSRVR  428 (831)
Q Consensus       350 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~  428 (831)
                              .+..+..+++|+.|++++|.+..+|..+..  +++|+.|++++|.+.+.+| .++.+++|+.|++++|+...
T Consensus       198 --------lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~--l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~  267 (328)
T 4fcg_A          198 --------LPASIANLQNLKSLKIRNSPLSALGPAIHH--LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL  267 (328)
T ss_dssp             --------CCGGGGGCTTCCEEEEESSCCCCCCGGGGG--CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC
T ss_pred             --------chHhhcCCCCCCEEEccCCCCCcCchhhcc--CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchh
Confidence                    223345556666666666666666655543  5666666666666666555 45666666666666654333


Q ss_pred             eeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCCC
Q 038658          429 RLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPE  492 (831)
Q Consensus       429 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~  492 (831)
                      .++                                   ..+..+++|++|++++|+.+. .+|.
T Consensus       268 ~~p-----------------------------------~~~~~l~~L~~L~L~~n~~~~-~iP~  295 (328)
T 4fcg_A          268 TLP-----------------------------------LDIHRLTQLEKLDLRGCVNLS-RLPS  295 (328)
T ss_dssp             BCC-----------------------------------TTGGGCTTCCEEECTTCTTCC-CCCG
T ss_pred             hcc-----------------------------------hhhhcCCCCCEEeCCCCCchh-hccH
Confidence            222                                   113456777777777765543 6665

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.87  E-value=4.6e-21  Score=200.72  Aligned_cols=282  Identities=18%  Similarity=0.190  Sum_probs=167.1

Q ss_pred             ceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccch-hhhccCCccEEeecCcCccccccccccCcccccccccCC
Q 038658          193 RLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPE-SVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSN  271 (831)
Q Consensus       193 ~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~  271 (831)
                      ++++++++++.++.+|..+.  ++|++|++++|.++.+|. .++++++|++|++++|......|..++.+++|++|++++
T Consensus        32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  109 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK  109 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence            45556666665655555443  455666666666665543 456666666666666543333355566666666666666


Q ss_pred             CCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCChhh
Q 038658          272 TDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLRE  351 (831)
Q Consensus       272 ~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  351 (831)
                      |. ++.+|..+.  ++|++|..                    . ...+..+....+.++++|+.|+++.|.....     
T Consensus       110 n~-l~~l~~~~~--~~L~~L~l--------------------~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----  160 (330)
T 1xku_A          110 NQ-LKELPEKMP--KTLQELRV--------------------H-ENEITKVRKSVFNGLNQMIVVELGTNPLKSS-----  160 (330)
T ss_dssp             SC-CSBCCSSCC--TTCCEEEC--------------------C-SSCCCBBCHHHHTTCTTCCEEECCSSCCCGG-----
T ss_pred             Cc-CCccChhhc--ccccEEEC--------------------C-CCcccccCHhHhcCCccccEEECCCCcCCcc-----
Confidence            55 445554433  34444411                    1 1122223333455556666666655543210     


Q ss_pred             hhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCC-CCCCCCCcceEEeccccCceee
Q 038658          352 AETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLP-SVGQLPSLKHLAVRRMSRVRRL  430 (831)
Q Consensus       352 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~~~  430 (831)
                          ......+..+++|+.|+++++....+|..+    +++|+.|++++|.+.+..+ .+..+++|+.|+++++. +..+
T Consensus       161 ----~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~  231 (330)
T 1xku_A          161 ----GIENGAFQGMKKLSYIRIADTNITTIPQGL----PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAV  231 (330)
T ss_dssp             ----GBCTTGGGGCTTCCEEECCSSCCCSCCSSC----CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEE
T ss_pred             ----CcChhhccCCCCcCEEECCCCccccCCccc----cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-Ccee
Confidence                012234566788888888888888877665    3788889998888776655 67888889999988764 3333


Q ss_pred             CccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCCC----------CCCcccEE
Q 038658          431 GSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPE----------HLPALEML  500 (831)
Q Consensus       431 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~----------~l~~L~~L  500 (831)
                      +...+     ..+++|+.|++.+.. +.     ..+..+..+++|++|++++| .++ .+|.          ..+.++.|
T Consensus       232 ~~~~~-----~~l~~L~~L~L~~N~-l~-----~lp~~l~~l~~L~~L~l~~N-~i~-~~~~~~f~~~~~~~~~~~l~~l  298 (330)
T 1xku_A          232 DNGSL-----ANTPHLRELHLNNNK-LV-----KVPGGLADHKYIQVVYLHNN-NIS-AIGSNDFCPPGYNTKKASYSGV  298 (330)
T ss_dssp             CTTTG-----GGSTTCCEEECCSSC-CS-----SCCTTTTTCSSCCEEECCSS-CCC-CCCTTSSSCSSCCTTSCCCSEE
T ss_pred             Chhhc-----cCCCCCCEEECCCCc-Cc-----cCChhhccCCCcCEEECCCC-cCC-ccChhhcCCcccccccccccce
Confidence            32222     237788888888742 22     23333667889999999984 666 4432          23677888


Q ss_pred             EEccccCc-----cccCCCCCccceEEEcCCC
Q 038658          501 VIGGCEEL-----LVSITSLPALSKLEIGGCK  527 (831)
Q Consensus       501 ~l~~~~~l-----~~~~~~l~~L~~L~l~~~~  527 (831)
                      ++.+|+..     +..+..+++++.+++++|+
T Consensus       299 ~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          299 SLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             ECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             EeecCcccccccCccccccccceeEEEecccC
Confidence            88888742     2345667888888887763

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.86  E-value=2.9e-21  Score=202.34  Aligned_cols=281  Identities=16%  Similarity=0.154  Sum_probs=189.2

Q ss_pred             ceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccc-hhhhccCCccEEeecCcCccccccccccCcccccccccCC
Q 038658          193 RLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLP-ESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSN  271 (831)
Q Consensus       193 ~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~  271 (831)
                      ++++++++++.++.+|..+.  ++|++|++++|.++.+| ..++++++|++|++++|......|..++++++|++|++++
T Consensus        34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  111 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK  111 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred             cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence            57777777777777776663  57778888887777664 4677788888888877764444466777788888888877


Q ss_pred             CCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCChhh
Q 038658          272 TDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLRE  351 (831)
Q Consensus       272 ~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  351 (831)
                      |. +..+|..+.  ++|++|..                    . .+.+..+....+.++++|+.|++++|.....     
T Consensus       112 n~-l~~l~~~~~--~~L~~L~l--------------------~-~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-----  162 (332)
T 2ft3_A          112 NH-LVEIPPNLP--SSLVELRI--------------------H-DNRIRKVPKGVFSGLRNMNCIEMGGNPLENS-----  162 (332)
T ss_dssp             SC-CCSCCSSCC--TTCCEEEC--------------------C-SSCCCCCCSGGGSSCSSCCEEECCSCCCBGG-----
T ss_pred             Cc-CCccCcccc--ccCCEEEC--------------------C-CCccCccCHhHhCCCccCCEEECCCCccccC-----
Confidence            76 556666554  56666621                    1 2233334444566777788888876654210     


Q ss_pred             hhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCC-CCCCCCCcceEEeccccCceee
Q 038658          352 AETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLP-SVGQLPSLKHLAVRRMSRVRRL  430 (831)
Q Consensus       352 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~~~  430 (831)
                          ......+..+ +|+.|++++|....+|..+    +++|+.|++++|.+....+ .+..+++|+.|+++++. +..+
T Consensus       163 ----~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~----~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~-l~~~  232 (332)
T 2ft3_A          163 ----GFEPGAFDGL-KLNYLRISEAKLTGIPKDL----PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMI  232 (332)
T ss_dssp             ----GSCTTSSCSC-CCSCCBCCSSBCSSCCSSS----CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC-CCCC
T ss_pred             ----CCCcccccCC-ccCEEECcCCCCCccCccc----cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CCcC
Confidence                0122344455 8899999999988888765    3789999999998877665 78889999999998864 3333


Q ss_pred             CccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCCC----------CCCcccEE
Q 038658          431 GSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPE----------HLPALEML  500 (831)
Q Consensus       431 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~----------~l~~L~~L  500 (831)
                      ....+     ..+++|+.|++.+.. +.     ..+..+..+++|++|++++ +.++ .+|.          ..++|+.|
T Consensus       233 ~~~~~-----~~l~~L~~L~L~~N~-l~-----~lp~~l~~l~~L~~L~l~~-N~l~-~~~~~~~~~~~~~~~~~~l~~L  299 (332)
T 2ft3_A          233 ENGSL-----SFLPTLRELHLDNNK-LS-----RVPAGLPDLKLLQVVYLHT-NNIT-KVGVNDFCPVGFGVKRAYYNGI  299 (332)
T ss_dssp             CTTGG-----GGCTTCCEEECCSSC-CC-----BCCTTGGGCTTCCEEECCS-SCCC-BCCTTSSSCSSCCSSSCCBSEE
T ss_pred             ChhHh-----hCCCCCCEEECCCCc-Ce-----ecChhhhcCccCCEEECCC-CCCC-ccChhHccccccccccccccce
Confidence            32222     237889999988742 22     2333366789999999998 4676 3432          14668899


Q ss_pred             EEccccCc-----cccCCCCCccceEEEcCCC
Q 038658          501 VIGGCEEL-----LVSITSLPALSKLEIGGCK  527 (831)
Q Consensus       501 ~l~~~~~l-----~~~~~~l~~L~~L~l~~~~  527 (831)
                      ++.+|+..     +..+..+++|+.+++++|+
T Consensus       300 ~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          300 SLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             ECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             EeecCcccccccCcccccccchhhhhhccccc
Confidence            99988733     2456678889999988875

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.85  E-value=1.2e-21  Score=202.71  Aligned_cols=149  Identities=20%  Similarity=0.225  Sum_probs=79.1

Q ss_pred             CCeeEEEEEccccCcc-ccccccccCCcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCcc-ccCccccCC
Q 038658          137 KNLRHLSCICGKYDGV-KRFEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWIS-ELPDSIGDL  214 (831)
Q Consensus       137 ~~~r~l~~~~~~~~~~-~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~-~lp~~~~~l  214 (831)
                      ..++++.+..+..... .....+.++++|++|.+.+     .+.+.+.+|..+..+++|++|++++|.++ .+|..|+++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~-----~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l  124 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGG-----INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI  124 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEE-----ETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCC-----CCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCC
Confidence            3456666655544320 1123445555555554431     12234445555555666666666666655 445555666


Q ss_pred             CCCceeecCCCCCC-ccchhhhccCCccEEeecCcCccccccccccCcc-cccccccCCCCCcccccCCCCCccccccc
Q 038658          215 RYLRYLNLSGTQIR-TLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLI-KLHHLNNSNTDSLEEMPLGIGKLTCLQTL  291 (831)
Q Consensus       215 ~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~-~L~~L~l~~~~~~~~~p~~~~~L~~L~~L  291 (831)
                      ++|++|++++|.++ .+|..++++++|++|++++|.....+|..++.++ +|++|++++|.+.+.+|..++.++ |+.|
T Consensus       125 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L  202 (313)
T 1ogq_A          125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFV  202 (313)
T ss_dssp             TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEE
T ss_pred             CCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEE
Confidence            66666666666555 4555566666666666666554445555555555 566666666654445555555544 4444

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.84  E-value=5.7e-21  Score=198.78  Aligned_cols=206  Identities=25%  Similarity=0.379  Sum_probs=165.1

Q ss_pred             CCcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCc
Q 038658          161 IQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNL  240 (831)
Q Consensus       161 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L  240 (831)
                      ..+++.|.+.+.      .+. .+|+.++.+++|++|+|++|.++.+|..++++++|++|+|++|.++.+|..++++++|
T Consensus        80 ~~~l~~L~L~~n------~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L  152 (328)
T 4fcg_A           80 QPGRVALELRSV------PLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRL  152 (328)
T ss_dssp             STTCCEEEEESS------CCS-SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTC
T ss_pred             ccceeEEEccCC------Cch-hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCC
Confidence            456677755432      232 6788888999999999999999999999999999999999999999999999999999


Q ss_pred             cEEeecCcCccccccccccC---------cccccccccCCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccc
Q 038658          241 HTLSLEGCRGLRKLCAGMGN---------LIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLT  311 (831)
Q Consensus       241 ~~L~l~~~~~~~~lp~~i~~---------L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~  311 (831)
                      ++|++++|...+.+|..++.         +++|++|++++|. +..+|..++++++|++|                    
T Consensus       153 ~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L--------------------  211 (328)
T 4fcg_A          153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSL--------------------  211 (328)
T ss_dssp             CEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEE--------------------
T ss_pred             CEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEE--------------------
Confidence            99999999989999987765         8999999999987 55777766666655555                    


Q ss_pred             cccCeeeEcccccccccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecC-CCCCccCCCCCC
Q 038658          312 HLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGG-TKFPIWLGDSSF  390 (831)
Q Consensus       312 ~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~p~~~~~~~~  390 (831)
                                               ++++|....            .+..+..+++|+.|++++|.. ..+|.++..  +
T Consensus       212 -------------------------~L~~N~l~~------------l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~--l  252 (328)
T 4fcg_A          212 -------------------------KIRNSPLSA------------LGPAIHHLPKLEELDLRGCTALRNYPPIFGG--R  252 (328)
T ss_dssp             -------------------------EEESSCCCC------------CCGGGGGCTTCCEEECTTCTTCCBCCCCTTC--C
T ss_pred             -------------------------EccCCCCCc------------CchhhccCCCCCEEECcCCcchhhhHHHhcC--C
Confidence                                     444443321            122355667888888888664 356777765  8


Q ss_pred             CceeEEEEecCCCCCCCC-CCCCCCCcceEEeccccCceeeCcc
Q 038658          391 SNLVTLKFEDCGMCTTLP-SVGQLPSLKHLAVRRMSRVRRLGSE  433 (831)
Q Consensus       391 ~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~~~~~~  433 (831)
                      ++|+.|++++|...+.+| .++.+++|+.|++++|+....++..
T Consensus       253 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~  296 (328)
T 4fcg_A          253 APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL  296 (328)
T ss_dssp             CCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred             CCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH
Confidence            999999999999999888 7899999999999998877766544

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.84  E-value=2e-21  Score=201.05  Aligned_cols=223  Identities=17%  Similarity=0.165  Sum_probs=151.1

Q ss_pred             CcceEEccccccCCCcccccc--cccccccCCcceEEEEeCC-CCcc-ccCccccCCCCCceeecCCCCCC-ccchhhhc
Q 038658          162 QHLRTFLPVCLSNSSQGFLAH--SILPKLFKLQRLRVFSLCG-YWIS-ELPDSIGDLRYLRYLNLSGTQIR-TLPESVNK  236 (831)
Q Consensus       162 ~~Lr~L~~~~~~~~~~~~~~~--~~~~~~~~l~~L~~L~L~~-~~i~-~lp~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~  236 (831)
                      .+++.|.+.+      +.+.+  .+|+.+..+++|++|++++ |.+. .+|..|+++++|++|++++|.++ .+|..+++
T Consensus        50 ~~l~~L~L~~------~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~  123 (313)
T 1ogq_A           50 YRVNNLDLSG------LNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ  123 (313)
T ss_dssp             CCEEEEEEEC------CCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG
T ss_pred             ceEEEEECCC------CCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC
Confidence            4677775543      34455  6778888999999999995 7766 67888999999999999999988 78888999


Q ss_pred             cCCccEEeecCcCccccccccccCcccccccccCCCCCcccccCCCCCcc-ccccccceEecCCCCCcchhhhccccccC
Q 038658          237 LYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLT-CLQTLCNFVVGKDSGSRLRELKLLTHLRG  315 (831)
Q Consensus       237 L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~-~L~~L~~~~~~~~~~~~~~~l~~L~~L~~  315 (831)
                      +++|++|++++|.....+|..++.+++|++|++++|.+.+.+|..+++++ +|+.|..                    . 
T Consensus       124 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L--------------------~-  182 (313)
T 1ogq_A          124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI--------------------S-  182 (313)
T ss_dssp             CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEEC--------------------C-
T ss_pred             CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEEC--------------------c-
Confidence            99999999999876668888899999999999999986668888888887 7887721                    1 


Q ss_pred             eeeEcccccccccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeE
Q 038658          316 TLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVT  395 (831)
Q Consensus       316 ~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~  395 (831)
                      .+.+.......+..+. |+.|++++|.....           .+..+..+++|+.|++++|.+...+..+..  +++|++
T Consensus       183 ~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~-----------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--l~~L~~  248 (313)
T 1ogq_A          183 RNRLTGKIPPTFANLN-LAFVDLSRNMLEGD-----------ASVLFGSDKNTQKIHLAKNSLAFDLGKVGL--SKNLNG  248 (313)
T ss_dssp             SSEEEEECCGGGGGCC-CSEEECCSSEEEEC-----------CGGGCCTTSCCSEEECCSSEECCBGGGCCC--CTTCCE
T ss_pred             CCeeeccCChHHhCCc-ccEEECcCCcccCc-----------CCHHHhcCCCCCEEECCCCceeeecCcccc--cCCCCE
Confidence            1122222223333343 66666655543211           233455556666666666665544333332  566666


Q ss_pred             EEEecCCCCCCCC-CCCCCCCcceEEecccc
Q 038658          396 LKFEDCGMCTTLP-SVGQLPSLKHLAVRRMS  425 (831)
Q Consensus       396 L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~  425 (831)
                      |++++|.+.+.+| .+..+++|+.|+++++.
T Consensus       249 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  279 (313)
T 1ogq_A          249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN  279 (313)
T ss_dssp             EECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred             EECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence            6666666654555 45566666666666543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.84  E-value=7.7e-23  Score=233.41  Aligned_cols=112  Identities=15%  Similarity=0.134  Sum_probs=63.9

Q ss_pred             cccCCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEeccCCCCc-ccccccCCCCCCCeEEEecCCCCcc--c
Q 038658          588 LQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLV-KLPQSLLSLSSLREIEIYNCSSFVS--F  664 (831)
Q Consensus       588 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~-~l~~~l~~l~~L~~L~L~~~~~l~~--l  664 (831)
                      +.++++|++|++++|.+  .+....   ...+....++|++|++++|.... .++..+..+++|++|+|++|+ ++.  +
T Consensus       432 ~~~~~~L~~L~L~~~~~--~l~~~~---~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~  505 (592)
T 3ogk_B          432 LIGCKKLRRFAFYLRQG--GLTDLG---LSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAI  505 (592)
T ss_dssp             HHHCTTCCEEEEECCGG--GCCHHH---HHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHH
T ss_pred             HHhCCCCCEEEEecCCC--CccHHH---HHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHH
Confidence            35577778888776653  111111   12223333578888888877543 345556777888888888886 432  1


Q ss_pred             cCC-CCCCCccEEEEecCCCCcccccccccCCCCCcCeEEEcc
Q 038658          665 PEV-ALPSKVRSISIHRCDALKSLPEAWMCDANLSLEILTISR  706 (831)
Q Consensus       665 ~~~-~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~  706 (831)
                      +.. ..+++|++|++++|. ++..........++.+....+..
T Consensus       506 ~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~~  547 (592)
T 3ogk_B          506 AAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIPS  547 (592)
T ss_dssp             HHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEECC
T ss_pred             HHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEecC
Confidence            211 126788888888887 44332211122366666665554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.83  E-value=4.1e-22  Score=227.45  Aligned_cols=61  Identities=21%  Similarity=0.309  Sum_probs=38.4

Q ss_pred             CCCCCceeecCCCCCC-ccchhhhcc--CCccEEeecCcCccc--cccccccCcccccccccCCCC
Q 038658          213 DLRYLRYLNLSGTQIR-TLPESVNKL--YNLHTLSLEGCRGLR--KLCAGMGNLIKLHHLNNSNTD  273 (831)
Q Consensus       213 ~l~~Lr~L~L~~~~i~-~lp~~i~~L--~~L~~L~l~~~~~~~--~lp~~i~~L~~L~~L~l~~~~  273 (831)
                      .+++|++|+|++|.++ ..+..+..+  .+|++|++++|....  .++..+.++++|++|++++|.
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~  175 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS  175 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCE
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcccc
Confidence            6777888888877766 234555553  348888887775322  123334467778888887775

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.82  E-value=1.3e-19  Score=189.84  Aligned_cols=196  Identities=17%  Similarity=0.148  Sum_probs=93.5

Q ss_pred             ccCCcceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCcccccc-ccccCccccc
Q 038658          188 LFKLQRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLC-AGMGNLIKLH  265 (831)
Q Consensus       188 ~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~  265 (831)
                      +..+++|++|++++|.++.+ |..|+++++|++|++++|.++.+|..+.  ++|++|++++|. +..+| ..++.+++|+
T Consensus        74 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~  150 (332)
T 2ft3_A           74 FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMN  150 (332)
T ss_dssp             TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCC
T ss_pred             hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCC
Confidence            33555555555555555544 4455555555555555555555554443  455555555543 22332 2345555555


Q ss_pred             ccccCCCCCc--ccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecC
Q 038658          266 HLNNSNTDSL--EEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNS  343 (831)
Q Consensus       266 ~L~l~~~~~~--~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~  343 (831)
                      +|++++|...  +..|..++.+ +|+.|...                     ...+..+....   .++|+.|++++|..
T Consensus       151 ~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~---------------------~n~l~~l~~~~---~~~L~~L~l~~n~i  205 (332)
T 2ft3_A          151 CIEMGGNPLENSGFEPGAFDGL-KLNYLRIS---------------------EAKLTGIPKDL---PETLNELHLDHNKI  205 (332)
T ss_dssp             EEECCSCCCBGGGSCTTSSCSC-CCSCCBCC---------------------SSBCSSCCSSS---CSSCSCCBCCSSCC
T ss_pred             EEECCCCccccCCCCcccccCC-ccCEEECc---------------------CCCCCccCccc---cCCCCEEECCCCcC
Confidence            5555555421  1223334444 44444110                     11111111111   13555555555543


Q ss_pred             CCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCc-cCCCCCCCceeEEEEecCCCCCCCCCCCCCCCcceEEec
Q 038658          344 TDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPI-WLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHLAVR  422 (831)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~  422 (831)
                      ...           ....+..+++|+.|++++|.+..++. ++..  +++|+.|++++|.+....+.+..+++|+.|+++
T Consensus       206 ~~~-----------~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~--l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~  272 (332)
T 2ft3_A          206 QAI-----------ELEDLLRYSKLYRLGLGHNQIRMIENGSLSF--LPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLH  272 (332)
T ss_dssp             CCC-----------CTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG--CTTCCEEECCSSCCCBCCTTGGGCTTCCEEECC
T ss_pred             Ccc-----------CHHHhcCCCCCCEEECCCCcCCcCChhHhhC--CCCCCEEECCCCcCeecChhhhcCccCCEEECC
Confidence            322           22345555666666666666555543 3332  566666666666555222245566666666666


Q ss_pred             cc
Q 038658          423 RM  424 (831)
Q Consensus       423 ~~  424 (831)
                      ++
T Consensus       273 ~N  274 (332)
T 2ft3_A          273 TN  274 (332)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.82  E-value=9e-20  Score=192.77  Aligned_cols=87  Identities=18%  Similarity=0.211  Sum_probs=65.0

Q ss_pred             CCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccch-hhhccCCccEEeecCcCccccccccccCcccccccc
Q 038658          190 KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPE-SVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLN  268 (831)
Q Consensus       190 ~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~  268 (831)
                      .++...+.+++++.++.+|..+.  .+|++|++++|.++.+|. .+.++++|++|++++|......|..++++++|++|+
T Consensus        29 ~C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (353)
T 2z80_A           29 SCDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD  106 (353)
T ss_dssp             EECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence            34445567888888888887665  488888888888888765 788888888888888764444456688888888888


Q ss_pred             cCCCCCccccc
Q 038658          269 NSNTDSLEEMP  279 (831)
Q Consensus       269 l~~~~~~~~~p  279 (831)
                      +++|. +..+|
T Consensus       107 Ls~n~-l~~~~  116 (353)
T 2z80_A          107 LSYNY-LSNLS  116 (353)
T ss_dssp             CCSSC-CSSCC
T ss_pred             CCCCc-CCcCC
Confidence            88886 33443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.81  E-value=2.3e-19  Score=187.73  Aligned_cols=96  Identities=21%  Similarity=0.251  Sum_probs=46.6

Q ss_pred             ceEEEEeCCCCccccCc-cccCCCCCceeecCCCCCCcc-chhhhccCCccEEeecCcCccccccccccCcccccccccC
Q 038658          193 RLRVFSLCGYWISELPD-SIGDLRYLRYLNLSGTQIRTL-PESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNS  270 (831)
Q Consensus       193 ~L~~L~L~~~~i~~lp~-~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~  270 (831)
                      .+++|++++|.++.++. .|+++++|++|++++|.++.+ |..++++++|++|++++|. +..+|..+.  ++|++|+++
T Consensus        53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~  129 (330)
T 1xku_A           53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMP--KTLQELRVH  129 (330)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCC--TTCCEEECC
T ss_pred             CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhhc--ccccEEECC
Confidence            45555555555555432 445555555555555555544 4455555555555555543 334444433  455555555


Q ss_pred             CCCCcccccCCCCCccccccc
Q 038658          271 NTDSLEEMPLGIGKLTCLQTL  291 (831)
Q Consensus       271 ~~~~~~~~p~~~~~L~~L~~L  291 (831)
                      +|.+....+..++++++|++|
T Consensus       130 ~n~l~~~~~~~~~~l~~L~~L  150 (330)
T 1xku_A          130 ENEITKVRKSVFNGLNQMIVV  150 (330)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEE
T ss_pred             CCcccccCHhHhcCCccccEE
Confidence            554222222224455555544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.81  E-value=1.6e-18  Score=194.04  Aligned_cols=78  Identities=22%  Similarity=0.272  Sum_probs=64.5

Q ss_pred             cceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcccccccccCC
Q 038658          192 QRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSN  271 (831)
Q Consensus       192 ~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~  271 (831)
                      .++++|++++|.++.+|..+.  ++|++|++++|.|+.+|.   .+++|++|++++|. +..+|.   .+++|++|++++
T Consensus        40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~  110 (622)
T 3g06_A           40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSIFS  110 (622)
T ss_dssp             HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEECS
T ss_pred             CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEECcC
Confidence            458999999999999998776  899999999999999987   67899999999976 667776   678888888888


Q ss_pred             CCCccccc
Q 038658          272 TDSLEEMP  279 (831)
Q Consensus       272 ~~~~~~~p  279 (831)
                      |. +..+|
T Consensus       111 N~-l~~l~  117 (622)
T 3g06_A          111 NP-LTHLP  117 (622)
T ss_dssp             CC-CCCCC
T ss_pred             Cc-CCCCC
Confidence            86 44444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.78  E-value=3.9e-19  Score=187.87  Aligned_cols=187  Identities=21%  Similarity=0.188  Sum_probs=123.6

Q ss_pred             cccccccCCcceEEEEeCCCCccccCc-cccCCCCCceeecCCCCCCccc-hhhhccCCccEEeecCcCcccccccc-cc
Q 038658          183 SILPKLFKLQRLRVFSLCGYWISELPD-SIGDLRYLRYLNLSGTQIRTLP-ESVNKLYNLHTLSLEGCRGLRKLCAG-MG  259 (831)
Q Consensus       183 ~~~~~~~~l~~L~~L~L~~~~i~~lp~-~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~-i~  259 (831)
                      .+|..++  ++|++|++++|.++.+|. .|.++++|++|++++|.++.++ ..++++++|++|++++|. +..+|.. ++
T Consensus        45 ~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~  121 (353)
T 2z80_A           45 SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFK  121 (353)
T ss_dssp             SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHT
T ss_pred             ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhC
Confidence            3455444  478999999999888865 7889999999999999988774 568899999999999876 5556655 88


Q ss_pred             CcccccccccCCCCCcccccC--CCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEE
Q 038658          260 NLIKLHHLNNSNTDSLEEMPL--GIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLM  337 (831)
Q Consensus       260 ~L~~L~~L~l~~~~~~~~~p~--~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~  337 (831)
                      ++++|++|++++|. +..+|.  .++++++|++|......                    .+..+....+.++++|+.|+
T Consensus       122 ~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~--------------------~~~~~~~~~~~~l~~L~~L~  180 (353)
T 2z80_A          122 PLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMD--------------------TFTKIQRKDFAGLTFLEELE  180 (353)
T ss_dssp             TCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESS--------------------SCCEECTTTTTTCCEEEEEE
T ss_pred             CCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCc--------------------cccccCHHHccCCCCCCEEE
Confidence            89999999999987 556765  57777777777221110                    11222233455556666666


Q ss_pred             EEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCC
Q 038658          338 LRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCT  405 (831)
Q Consensus       338 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~  405 (831)
                      +++|.....           .+..+..+++|+.|++++|....+|..+.. .+++|+.|++++|.+.+
T Consensus       181 l~~n~l~~~-----------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~L~~n~l~~  236 (353)
T 2z80_A          181 IDASDLQSY-----------EPKSLKSIQNVSHLILHMKQHILLLEIFVD-VTSSVECLELRDTDLDT  236 (353)
T ss_dssp             EEETTCCEE-----------CTTTTTTCSEEEEEEEECSCSTTHHHHHHH-HTTTEEEEEEESCBCTT
T ss_pred             CCCCCcCcc-----------CHHHHhccccCCeecCCCCccccchhhhhh-hcccccEEECCCCcccc
Confidence            666543221           233455566666666666666555543321 24666666666665543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.78  E-value=3.7e-21  Score=219.64  Aligned_cols=84  Identities=20%  Similarity=0.349  Sum_probs=56.3

Q ss_pred             CCcceEEEEeCCCC-cccc---C------------ccccCCCCCceeecCCCCCCc-cchhhh-ccCCccEEeecCcCcc
Q 038658          190 KLQRLRVFSLCGYW-ISEL---P------------DSIGDLRYLRYLNLSGTQIRT-LPESVN-KLYNLHTLSLEGCRGL  251 (831)
Q Consensus       190 ~l~~L~~L~L~~~~-i~~l---p------------~~~~~l~~Lr~L~L~~~~i~~-lp~~i~-~L~~L~~L~l~~~~~~  251 (831)
                      .+++|+.|+++++. +..+   |            .....+++|++|+|++|.++. .+..+. .+++|++|++++|..+
T Consensus        64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~  143 (594)
T 2p1m_B           64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF  143 (594)
T ss_dssp             HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred             hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence            56667777777664 2211   1            112457788888888887763 345554 6888888888888555


Q ss_pred             cc--ccccccCcccccccccCCCC
Q 038658          252 RK--LCAGMGNLIKLHHLNNSNTD  273 (831)
Q Consensus       252 ~~--lp~~i~~L~~L~~L~l~~~~  273 (831)
                      ..  ++..+.++++|++|++++|.
T Consensus       144 ~~~~l~~~~~~~~~L~~L~L~~~~  167 (594)
T 2p1m_B          144 STDGLAAIAATCRNLKELDLRESD  167 (594)
T ss_dssp             EHHHHHHHHHHCTTCCEEECTTCE
T ss_pred             CHHHHHHHHHhCCCCCEEeCcCCc
Confidence            44  45545578888888888886

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.77  E-value=2.6e-17  Score=184.18  Aligned_cols=85  Identities=25%  Similarity=0.222  Sum_probs=70.9

Q ss_pred             cccccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcc
Q 038658          183 SILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLI  262 (831)
Q Consensus       183 ~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~  262 (831)
                      .+|..++  ++|++|++++|.++.+|.   .+++|++|+|++|.|+.+|.   .+++|++|++++|. +..+|.   .++
T Consensus        54 ~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-l~~l~~---~l~  121 (622)
T 3g06_A           54 TLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP-LTHLPA---LPS  121 (622)
T ss_dssp             CCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC-CCCCCC---CCT
T ss_pred             ccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc-CCCCCC---CCC
Confidence            4555554  789999999999999987   57899999999999999987   78999999999975 666776   678


Q ss_pred             cccccccCCCCCcccccC
Q 038658          263 KLHHLNNSNTDSLEEMPL  280 (831)
Q Consensus       263 ~L~~L~l~~~~~~~~~p~  280 (831)
                      +|+.|++++|. +..+|.
T Consensus       122 ~L~~L~L~~N~-l~~lp~  138 (622)
T 3g06_A          122 GLCKLWIFGNQ-LTSLPV  138 (622)
T ss_dssp             TCCEEECCSSC-CSCCCC
T ss_pred             CcCEEECCCCC-CCcCCC
Confidence            89999999987 555664

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.77  E-value=1.5e-18  Score=179.45  Aligned_cols=180  Identities=20%  Similarity=0.224  Sum_probs=120.5

Q ss_pred             cccccccCCcceEEEEeCCCCccccCcc-ccCCCCCceeecCCCCCCcc---chhhhccCCccEEeecCcCccccccccc
Q 038658          183 SILPKLFKLQRLRVFSLCGYWISELPDS-IGDLRYLRYLNLSGTQIRTL---PESVNKLYNLHTLSLEGCRGLRKLCAGM  258 (831)
Q Consensus       183 ~~~~~~~~l~~L~~L~L~~~~i~~lp~~-~~~l~~Lr~L~L~~~~i~~l---p~~i~~L~~L~~L~l~~~~~~~~lp~~i  258 (831)
                      .+|..+.  ++|++|++++|.++.+|.. |+++++|++|++++|.++.+   |..+..+++|++|++++|. +..+|..+
T Consensus        21 ~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~   97 (306)
T 2z66_A           21 SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNF   97 (306)
T ss_dssp             SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEE
T ss_pred             cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhc
Confidence            3444443  5788899999988888754 68889999999999888755   6777888999999999875 56678888


Q ss_pred             cCcccccccccCCCCCcccccC--CCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceE
Q 038658          259 GNLIKLHHLNNSNTDSLEEMPL--GIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVL  336 (831)
Q Consensus       259 ~~L~~L~~L~l~~~~~~~~~p~--~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L  336 (831)
                      ..+++|++|++++|. +..++.  .+..+++|++|                                             
T Consensus        98 ~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L---------------------------------------------  131 (306)
T 2z66_A           98 LGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYL---------------------------------------------  131 (306)
T ss_dssp             ETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEE---------------------------------------------
T ss_pred             CCCCCCCEEECCCCc-ccccccchhhhhccCCCEE---------------------------------------------
Confidence            888999999998887 444442  45666655555                                             


Q ss_pred             EEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCC--CCccCCCCCCCceeEEEEecCCCCCCCC-CCCCC
Q 038658          337 MLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTK--FPIWLGDSSFSNLVTLKFEDCGMCTTLP-SVGQL  413 (831)
Q Consensus       337 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~p~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l  413 (831)
                      ++++|.....           ....+..+++|+.|++++|....  +|.++..  +++|+.|++++|.+.+..| .+..+
T Consensus       132 ~l~~n~l~~~-----------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~l  198 (306)
T 2z66_A          132 DISHTHTRVA-----------FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE--LRNLTFLDLSQCQLEQLSPTAFNSL  198 (306)
T ss_dssp             ECTTSCCEEC-----------STTTTTTCTTCCEEECTTCEEGGGEECSCCTT--CTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             ECCCCcCCcc-----------chhhcccCcCCCEEECCCCccccccchhHHhh--CcCCCEEECCCCCcCCcCHHHhcCC
Confidence            2222211100           12234445666666666665543  4555543  6777777777777665544 56667


Q ss_pred             CCcceEEeccc
Q 038658          414 PSLKHLAVRRM  424 (831)
Q Consensus       414 ~~L~~L~L~~~  424 (831)
                      ++|+.|+++++
T Consensus       199 ~~L~~L~L~~N  209 (306)
T 2z66_A          199 SSLQVLNMSHN  209 (306)
T ss_dssp             TTCCEEECTTS
T ss_pred             CCCCEEECCCC
Confidence            77777777664

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.77  E-value=1.3e-21  Score=215.73  Aligned_cols=94  Identities=26%  Similarity=0.210  Sum_probs=51.3

Q ss_pred             CCCCcEEEEccCCCcchhcccCCcccccCCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEeccCCCCc----
Q 038658          563 LPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLV----  638 (831)
Q Consensus       563 l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~----  638 (831)
                      .++|++|++++|.--..........+..+++|++|+++++ .+.........  ..+....++|++|++++|....    
T Consensus       312 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~--~~l~~~~~~L~~L~L~~n~i~~~~~~  388 (461)
T 1z7x_W          312 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELC--QGLGQPGSVLRVLWLADCDVSDSSCS  388 (461)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHH--HHHTSTTCCCCEEECTTSCCCHHHHH
T ss_pred             CccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHH--HHHcCCCCceEEEECCCCCCChhhHH
Confidence            3567777777665211100001122355678888888775 44432211110  1111112468888888887553    


Q ss_pred             ccccccCCCCCCCeEEEecCC
Q 038658          639 KLPQSLLSLSSLREIEIYNCS  659 (831)
Q Consensus       639 ~l~~~l~~l~~L~~L~L~~~~  659 (831)
                      .+|..+..+++|++|++++|+
T Consensus       389 ~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          389 SLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             HHHHHHHHCCCCCEEECCSSS
T ss_pred             HHHHHHHhCCCccEEECCCCC
Confidence            566667777888888888873

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.76  E-value=3.6e-18  Score=186.95  Aligned_cols=98  Identities=27%  Similarity=0.331  Sum_probs=76.1

Q ss_pred             cceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCCccc-hhhhccCCccEEeecCcCccccccc-cccCcccccccc
Q 038658          192 QRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTLP-ESVNKLYNLHTLSLEGCRGLRKLCA-GMGNLIKLHHLN  268 (831)
Q Consensus       192 ~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~  268 (831)
                      +++++|+|++|.++.+ |..|+++++|++|+|++|.|+.++ ..+.++++|++|+|++|. +..+|. .++.+++|++|+
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~  153 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELW  153 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEE
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEEE
Confidence            5788888888888877 677888888888888888888765 678888888888888876 445544 478888888888


Q ss_pred             cCCCCCcccccC-CCCCccccccc
Q 038658          269 NSNTDSLEEMPL-GIGKLTCLQTL  291 (831)
Q Consensus       269 l~~~~~~~~~p~-~~~~L~~L~~L  291 (831)
                      +++|. +..+|. .++++++|+.|
T Consensus       154 L~~N~-l~~~~~~~~~~l~~L~~L  176 (452)
T 3zyi_A          154 LRNNP-IESIPSYAFNRVPSLMRL  176 (452)
T ss_dssp             CCSCC-CCEECTTTTTTCTTCCEE
T ss_pred             CCCCC-cceeCHhHHhcCCcccEE
Confidence            88887 455554 47777777777

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.76  E-value=1.5e-17  Score=181.31  Aligned_cols=225  Identities=22%  Similarity=0.245  Sum_probs=143.8

Q ss_pred             cccccccCCcceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCCccc-hhhhccCCccEEeecCcCccccccc-ccc
Q 038658          183 SILPKLFKLQRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTLP-ESVNKLYNLHTLSLEGCRGLRKLCA-GMG  259 (831)
Q Consensus       183 ~~~~~~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~-~i~  259 (831)
                      .+|..+.  +++++|+|++|.++.+ +..|.++++|++|+|++|.+..++ ..+.++++|++|++++|. +..+|. .+.
T Consensus        57 ~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~  133 (440)
T 3zyj_A           57 EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFV  133 (440)
T ss_dssp             SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSC
T ss_pred             cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeCHhHhh
Confidence            4555444  5678888888888877 467788888888888888888765 567888888888888875 445544 578


Q ss_pred             CcccccccccCCCCCcccccC-CCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEE
Q 038658          260 NLIKLHHLNNSNTDSLEEMPL-GIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLML  338 (831)
Q Consensus       260 ~L~~L~~L~l~~~~~~~~~p~-~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l  338 (831)
                      .+++|++|++++|. +..+|. .+.++++|++|                                             ++
T Consensus       134 ~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L---------------------------------------------~l  167 (440)
T 3zyj_A          134 YLSKLKELWLRNNP-IESIPSYAFNRIPSLRRL---------------------------------------------DL  167 (440)
T ss_dssp             SCSSCCEEECCSCC-CCEECTTTTTTCTTCCEE---------------------------------------------EC
T ss_pred             ccccCceeeCCCCc-ccccCHHHhhhCcccCEe---------------------------------------------CC
Confidence            88888888888887 444443 46666666666                                             22


Q ss_pred             EeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCC-CCCCCCCcc
Q 038658          339 RWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLP-SVGQLPSLK  417 (831)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~  417 (831)
                      +.++....          .....+..+++|+.|++++|.+..+|.. .  .+++|+.|++++|.+....| .+..+++|+
T Consensus       168 ~~~~~l~~----------i~~~~~~~l~~L~~L~L~~n~l~~~~~~-~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  234 (440)
T 3zyj_A          168 GELKRLSY----------ISEGAFEGLSNLRYLNLAMCNLREIPNL-T--PLIKLDELDLSGNHLSAIRPGSFQGLMHLQ  234 (440)
T ss_dssp             CCCTTCCE----------ECTTTTTTCSSCCEEECTTSCCSSCCCC-T--TCSSCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             CCCCCcce----------eCcchhhcccccCeecCCCCcCcccccc-C--CCcccCEEECCCCccCccChhhhccCccCC
Confidence            11111000          0112345556677777777766666642 2  26777777777777766555 667777777


Q ss_pred             eEEeccccCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCCC----C
Q 038658          418 HLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPE----H  493 (831)
Q Consensus       418 ~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~----~  493 (831)
                      .|+++++. +..+..                                  ..+..+++|+.|++++ ++++ .+|.    .
T Consensus       235 ~L~L~~n~-l~~~~~----------------------------------~~~~~l~~L~~L~L~~-N~l~-~~~~~~~~~  277 (440)
T 3zyj_A          235 KLWMIQSQ-IQVIER----------------------------------NAFDNLQSLVEINLAH-NNLT-LLPHDLFTP  277 (440)
T ss_dssp             EEECTTCC-CCEECT----------------------------------TSSTTCTTCCEEECTT-SCCC-CCCTTTTSS
T ss_pred             EEECCCCc-eeEECh----------------------------------hhhcCCCCCCEEECCC-CCCC-ccChhHhcc
Confidence            77777643 222211                                  1144567777777777 4565 3432    4


Q ss_pred             CCcccEEEEcccc
Q 038658          494 LPALEMLVIGGCE  506 (831)
Q Consensus       494 l~~L~~L~l~~~~  506 (831)
                      +++|+.|++++|+
T Consensus       278 l~~L~~L~L~~Np  290 (440)
T 3zyj_A          278 LHHLERIHLHHNP  290 (440)
T ss_dssp             CTTCCEEECCSSC
T ss_pred             ccCCCEEEcCCCC
Confidence            5677777777766

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.75  E-value=1.2e-17  Score=182.65  Aligned_cols=240  Identities=21%  Similarity=0.210  Sum_probs=159.0

Q ss_pred             ceEEEEeCCCCccccCccccCCCCCceeecCCCCCCcc-chhhhccCCccEEeecCcCccccccccccCcccccccccCC
Q 038658          193 RLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTL-PESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSN  271 (831)
Q Consensus       193 ~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~  271 (831)
                      ..+.++.++..++.+|..+.  .+|++|+|++|+|+.+ |..+.++++|++|++++|......|..+.++++|++|++++
T Consensus        55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            35678888888999998775  7999999999999977 57899999999999999875555567899999999999999


Q ss_pred             CCCcccccCC-CCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCChh
Q 038658          272 TDSLEEMPLG-IGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLR  350 (831)
Q Consensus       272 ~~~~~~~p~~-~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~  350 (831)
                      |. +..+|.+ ++.+++|++|..                    . .+.+..+....+..+++|+.|+++.++....    
T Consensus       133 n~-l~~~~~~~~~~l~~L~~L~L--------------------~-~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~----  186 (452)
T 3zyi_A          133 NW-LTVIPSGAFEYLSKLRELWL--------------------R-NNPIESIPSYAFNRVPSLMRLDLGELKKLEY----  186 (452)
T ss_dssp             SC-CSBCCTTTSSSCTTCCEEEC--------------------C-SCCCCEECTTTTTTCTTCCEEECCCCTTCCE----
T ss_pred             Cc-CCccChhhhcccCCCCEEEC--------------------C-CCCcceeCHhHHhcCCcccEEeCCCCCCccc----
Confidence            98 5566654 888888888822                    1 2233344445566667777777755332211    


Q ss_pred             hhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCC-CCCCCCCcceEEeccccCcee
Q 038658          351 EAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLP-SVGQLPSLKHLAVRRMSRVRR  429 (831)
Q Consensus       351 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~~  429 (831)
                            .....+..+++|+.|++++|.+..+|.. .  .+++|+.|++++|.+.+..| .+..+++|+.|+++++. +..
T Consensus       187 ------i~~~~~~~l~~L~~L~L~~n~l~~~~~~-~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~  256 (452)
T 3zyi_A          187 ------ISEGAFEGLFNLKYLNLGMCNIKDMPNL-T--PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ-VSL  256 (452)
T ss_dssp             ------ECTTTTTTCTTCCEEECTTSCCSSCCCC-T--TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC-CCE
T ss_pred             ------cChhhccCCCCCCEEECCCCcccccccc-c--ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCc-Cce
Confidence                  0112344555666666666665555432 1  24556666666655554444 45555555555555432 111


Q ss_pred             eCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCCC----CCCcccEEEEccc
Q 038658          430 LGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPE----HLPALEMLVIGGC  505 (831)
Q Consensus       430 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~----~l~~L~~L~l~~~  505 (831)
                      +.                                  +..+..+++|+.|++++ ++++ .+|.    .+++|+.|++++|
T Consensus       257 ~~----------------------------------~~~~~~l~~L~~L~L~~-N~l~-~~~~~~~~~l~~L~~L~L~~N  300 (452)
T 3zyi_A          257 IE----------------------------------RNAFDGLASLVELNLAH-NNLS-SLPHDLFTPLRYLVELHLHHN  300 (452)
T ss_dssp             EC----------------------------------TTTTTTCTTCCEEECCS-SCCS-CCCTTSSTTCTTCCEEECCSS
T ss_pred             EC----------------------------------HHHhcCCCCCCEEECCC-CcCC-ccChHHhccccCCCEEEccCC
Confidence            11                                  11245678888888888 4676 4442    4678888888887


Q ss_pred             c
Q 038658          506 E  506 (831)
Q Consensus       506 ~  506 (831)
                      +
T Consensus       301 p  301 (452)
T 3zyi_A          301 P  301 (452)
T ss_dssp             C
T ss_pred             C
Confidence            6

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.75  E-value=5.3e-18  Score=184.86  Aligned_cols=124  Identities=18%  Similarity=0.178  Sum_probs=101.0

Q ss_pred             CcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCCccch-hhhccCC
Q 038658          162 QHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTLPE-SVNKLYN  239 (831)
Q Consensus       162 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~  239 (831)
                      ++++.|.+..      +.+....+..+.++++|++|+|++|.+..+ +..|.++++|++|+|++|+++.+|. .+..+++
T Consensus        64 ~~l~~L~L~~------n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  137 (440)
T 3zyj_A           64 TNTRLLNLHE------NQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSK  137 (440)
T ss_dssp             TTCSEEECCS------CCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSS
T ss_pred             CCCcEEEccC------CcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhcccc
Confidence            5778875543      444444455666999999999999999988 4789999999999999999999976 6899999


Q ss_pred             ccEEeecCcCccccccccccCcccccccccCCCCCcccccCC-CCCccccccc
Q 038658          240 LHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLG-IGKLTCLQTL  291 (831)
Q Consensus       240 L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~-~~~L~~L~~L  291 (831)
                      |++|++++|......+..+.++++|++|++++|..++.++.. ++++++|+.|
T Consensus       138 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L  190 (440)
T 3zyj_A          138 LKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL  190 (440)
T ss_dssp             CCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEE
T ss_pred             CceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCee
Confidence            999999998744433446999999999999997767777754 7778777777

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.75  E-value=2.8e-18  Score=177.41  Aligned_cols=222  Identities=18%  Similarity=0.140  Sum_probs=145.6

Q ss_pred             CcceEEccccccCCCccccccccccccc-CCcceEEEEeCCCCcccc---CccccCCCCCceeecCCCCCCccchhhhcc
Q 038658          162 QHLRTFLPVCLSNSSQGFLAHSILPKLF-KLQRLRVFSLCGYWISEL---PDSIGDLRYLRYLNLSGTQIRTLPESVNKL  237 (831)
Q Consensus       162 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~l---p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L  237 (831)
                      ++++.|.+.+      +.+. .+|..++ ++++|++|++++|.++.+   |..+..+++|++|++++|.+..+|..+..+
T Consensus        28 ~~l~~L~L~~------n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l  100 (306)
T 2z66_A           28 SSATRLELES------NKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL  100 (306)
T ss_dssp             TTCCEEECCS------SCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETC
T ss_pred             CCCCEEECCC------CccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCC
Confidence            4677775433      2232 4565544 888888888888887754   566677888888888888888888888888


Q ss_pred             CCccEEeecCcCcccccc--ccccCcccccccccCCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccC
Q 038658          238 YNLHTLSLEGCRGLRKLC--AGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRG  315 (831)
Q Consensus       238 ~~L~~L~l~~~~~~~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~  315 (831)
                      ++|++|++++|. +..+|  ..+..+++|++|++++|......|..++.+++|++|..                    . 
T Consensus       101 ~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l--------------------~-  158 (306)
T 2z66_A          101 EQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM--------------------A-  158 (306)
T ss_dssp             TTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEEC--------------------T-
T ss_pred             CCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEEC--------------------C-
Confidence            888888888865 44444  35788888888888888755555666777777777721                    1 


Q ss_pred             eeeEcc-cccccccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCc-cCCCCCCCce
Q 038658          316 TLTISK-LENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPI-WLGDSSFSNL  393 (831)
Q Consensus       316 ~l~i~~-l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~~~~L  393 (831)
                      ...+.. .....+..+++|+.|++++|.....           .+..+..+++|+.|++++|.+..++. .+.  .+++|
T Consensus       159 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L  225 (306)
T 2z66_A          159 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQL-----------SPTAFNSLSSLQVLNMSHNNFFSLDTFPYK--CLNSL  225 (306)
T ss_dssp             TCEEGGGEECSCCTTCTTCCEEECTTSCCCEE-----------CTTTTTTCTTCCEEECTTSCCSBCCSGGGT--TCTTC
T ss_pred             CCccccccchhHHhhCcCCCEEECCCCCcCCc-----------CHHHhcCCCCCCEEECCCCccCccChhhcc--CcccC
Confidence            111211 1223455566667776665543221           23445566777777777777666654 333  26777


Q ss_pred             eEEEEecCCCCCCCC-CCCCCC-CcceEEecccc
Q 038658          394 VTLKFEDCGMCTTLP-SVGQLP-SLKHLAVRRMS  425 (831)
Q Consensus       394 ~~L~l~~~~~~~~~~-~l~~l~-~L~~L~L~~~~  425 (831)
                      +.|++++|.+.+..+ .+..++ +|+.|++++++
T Consensus       226 ~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          226 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             CEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred             CEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence            777777777766555 566664 77777777654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.74  E-value=6.8e-18  Score=172.49  Aligned_cols=200  Identities=21%  Similarity=0.202  Sum_probs=117.3

Q ss_pred             cceEEEEeCCCCccccC-ccccCCCCCceeecCCCCCCcc-chhhhccCCccEEeecCcCccccc-cccccCcccccccc
Q 038658          192 QRLRVFSLCGYWISELP-DSIGDLRYLRYLNLSGTQIRTL-PESVNKLYNLHTLSLEGCRGLRKL-CAGMGNLIKLHHLN  268 (831)
Q Consensus       192 ~~L~~L~L~~~~i~~lp-~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~l-p~~i~~L~~L~~L~  268 (831)
                      ++|++|++++|.++.+| ..|..+++|++|++++|.++.+ |..+.++++|++|++++|..+..+ |..+..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            46777777777777764 4567777777777777777766 566777777777777776544444 55677777777777


Q ss_pred             cCCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCC
Q 038658          269 NSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSS  348 (831)
Q Consensus       269 l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~  348 (831)
                      +++|.+....|..++++++|++|..                    . ...+..+....+..+++|+.|++++|.....  
T Consensus       112 l~~n~l~~~~~~~~~~l~~L~~L~l--------------------~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--  168 (285)
T 1ozn_A          112 LDRCGLQELGPGLFRGLAALQYLYL--------------------Q-DNALQALPDDTFRDLGNLTHLFLHGNRISSV--  168 (285)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEEC--------------------C-SSCCCCCCTTTTTTCTTCCEEECCSSCCCEE--
T ss_pred             CCCCcCCEECHhHhhCCcCCCEEEC--------------------C-CCcccccCHhHhccCCCccEEECCCCccccc--
Confidence            7777744333455666666666621                    1 1112222223344455555555554433211  


Q ss_pred             hhhhhhHHhhhcCCCCCCCccEEEEeeecCCCC-CccCCCCCCCceeEEEEecCCCCCCCC-CCCCCCCcceEEecccc
Q 038658          349 LREAETQKGVLDMLKPHKNLEQFFISGYGGTKF-PIWLGDSSFSNLVTLKFEDCGMCTTLP-SVGQLPSLKHLAVRRMS  425 (831)
Q Consensus       349 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~  425 (831)
                               ....+..+++|+.|++++|.+..+ |.++..  +++|+.|++++|.+.+..+ .+..+++|+.|++++++
T Consensus       169 ---------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          169 ---------PERAFRGLHSLDRLLLHQNRVAHVHPHAFRD--LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             ---------CTTTTTTCTTCCEEECCSSCCCEECTTTTTT--CTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             ---------CHHHhcCccccCEEECCCCcccccCHhHccC--cccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence                     112244556666666666655544 444433  5666666666666554333 35566666666666543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.74  E-value=2e-21  Score=214.23  Aligned_cols=149  Identities=14%  Similarity=0.087  Sum_probs=79.5

Q ss_pred             CCeeEEEEEccccCccccccccccCCcceEEccccccCCCcccccc----cccccccCCcceEEEEeCCCCcccc-Cccc
Q 038658          137 KNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAH----SILPKLFKLQRLRVFSLCGYWISEL-PDSI  211 (831)
Q Consensus       137 ~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~----~~~~~~~~l~~L~~L~L~~~~i~~l-p~~~  211 (831)
                      ..++++.+..+..........+..+++|++|.+.+..      +..    .++..+..+++|++|++++|.+... +..+
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~------l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l   76 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG------LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCV   76 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC------CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHH
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCC------CCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHH
Confidence            3456666665544332212225566677776554322      221    2334444667777777777776542 2222


Q ss_pred             -cCCC----CCceeecCCCCCC-----ccchhhhccCCccEEeecCcCcccccccccc-----CcccccccccCCCCCcc
Q 038658          212 -GDLR----YLRYLNLSGTQIR-----TLPESVNKLYNLHTLSLEGCRGLRKLCAGMG-----NLIKLHHLNNSNTDSLE  276 (831)
Q Consensus       212 -~~l~----~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~-----~L~~L~~L~l~~~~~~~  276 (831)
                       ..+.    +|++|++++|.++     .+|..+..+++|++|++++|......+..+.     ..++|++|++++|....
T Consensus        77 ~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~  156 (461)
T 1z7x_W           77 LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA  156 (461)
T ss_dssp             HHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred             HHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCH
Confidence             2333    5777777777766     3466677777777777777653322222222     24567777777776332


Q ss_pred             c----ccCCCCCccccccc
Q 038658          277 E----MPLGIGKLTCLQTL  291 (831)
Q Consensus       277 ~----~p~~~~~L~~L~~L  291 (831)
                      .    ++..++.+++|++|
T Consensus       157 ~~~~~l~~~l~~~~~L~~L  175 (461)
T 1z7x_W          157 ASCEPLASVLRAKPDFKEL  175 (461)
T ss_dssp             GGHHHHHHHHHHCTTCCEE
T ss_pred             HHHHHHHHHHhhCCCCCEE
Confidence            1    23334444555555

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.74  E-value=3e-19  Score=185.27  Aligned_cols=248  Identities=14%  Similarity=0.129  Sum_probs=145.5

Q ss_pred             CCcceEEEEeCCCCccccC-ccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcccccccc
Q 038658          190 KLQRLRVFSLCGYWISELP-DSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLN  268 (831)
Q Consensus       190 ~l~~L~~L~L~~~~i~~lp-~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~  268 (831)
                      .+++|++|++++|.++.++ ..|+.+++|++|++++|.++.+++ +..+++|++|++++|. +..+|    ..++|++|+
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~----~~~~L~~L~  105 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL----VGPSIETLH  105 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEE----ECTTCCEEE
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-ccccc----CCCCcCEEE
Confidence            6677888888888887764 677888888888888888876654 7888888888888865 44443    347888888


Q ss_pred             cCCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCC
Q 038658          269 NSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSS  348 (831)
Q Consensus       269 l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~  348 (831)
                      +++|. +..++..  .+++|++|..                    . .+.+..+....+..+++|+.|++++|.....  
T Consensus       106 l~~n~-l~~~~~~--~~~~L~~L~l--------------------~-~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--  159 (317)
T 3o53_A          106 AANNN-ISRVSCS--RGQGKKNIYL--------------------A-NNKITMLRDLDEGCRSRVQYLDLKLNEIDTV--  159 (317)
T ss_dssp             CCSSC-CSEEEEC--CCSSCEEEEC--------------------C-SSCCCSGGGBCTGGGSSEEEEECTTSCCCEE--
T ss_pred             CCCCc-cCCcCcc--ccCCCCEEEC--------------------C-CCCCCCccchhhhccCCCCEEECCCCCCCcc--
Confidence            88887 4434322  2455555511                    1 2233333344455566666776665544321  


Q ss_pred             hhhhhhHHhhhcCC-CCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCCCCCCCCCcceEEeccccCc
Q 038658          349 LREAETQKGVLDML-KPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHLAVRRMSRV  427 (831)
Q Consensus       349 ~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~l  427 (831)
                               .+..+ ..+++|+.|++++|.+..+|....   +++|+.|++++|.+....+.+..+++|+.|+++++ .+
T Consensus       160 ---------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N-~l  226 (317)
T 3o53_A          160 ---------NFAELAASSDTLEHLNLQYNFIYDVKGQVV---FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KL  226 (317)
T ss_dssp             ---------EGGGGGGGTTTCCEEECTTSCCCEEECCCC---CTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS-CC
T ss_pred             ---------cHHHHhhccCcCCEEECCCCcCcccccccc---cccCCEEECCCCcCCcchhhhcccCcccEEECcCC-cc
Confidence                     11112 245677777777777666654432   56777777777776654445666777777777765 33


Q ss_pred             eeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCCC
Q 038658          428 RRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPE  492 (831)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~  492 (831)
                      ..++..+      ..+++|+.|++.+.+-.....    +..+..+++|+.+++.+|+.+++..|.
T Consensus       227 ~~l~~~~------~~l~~L~~L~l~~N~~~~~~~----~~~~~~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          227 VLIEKAL------RFSQNLEHFDLRGNGFHCGTL----RDFFSKNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             CEECTTC------CCCTTCCEEECTTCCCBHHHH----HHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred             cchhhHh------hcCCCCCEEEccCCCccCcCH----HHHHhccccceEEECCCchhccCCchh
Confidence            3443221      125566666665532210110    111335566666666665556554443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.72  E-value=4.7e-18  Score=175.83  Aligned_cols=200  Identities=20%  Similarity=0.197  Sum_probs=145.3

Q ss_pred             CCcceEEEEeCCCCcc-ccCccc--cCCCCCceeecCCCCCCccchhhhcc-----CCccEEeecCcCccccccccccCc
Q 038658          190 KLQRLRVFSLCGYWIS-ELPDSI--GDLRYLRYLNLSGTQIRTLPESVNKL-----YNLHTLSLEGCRGLRKLCAGMGNL  261 (831)
Q Consensus       190 ~l~~L~~L~L~~~~i~-~lp~~~--~~l~~Lr~L~L~~~~i~~lp~~i~~L-----~~L~~L~l~~~~~~~~lp~~i~~L  261 (831)
                      .+++|++|++++|.++ .+|..+  +.+++|++|++++|.++.+|..++.+     ++|++|++++|......|..++.+
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            6889999999999987 568776  88999999999999998888888887     899999999987555555788999


Q ss_pred             ccccccccCCCCCccc--ccCCC--CCccccccccceEecCCCCCcchhhhccccccCeeeEcc---cccccccCCCCcc
Q 038658          262 IKLHHLNNSNTDSLEE--MPLGI--GKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISK---LENAQLDGKKNLK  334 (831)
Q Consensus       262 ~~L~~L~l~~~~~~~~--~p~~~--~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~---l~~~~l~~~~~L~  334 (831)
                      ++|++|++++|...+.  +|..+  +.+++|++|...                     .+.+..   +....+..+++|+
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~---------------------~N~l~~~~~~~~~~~~~l~~L~  231 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR---------------------NAGMETPSGVCSALAAARVQLQ  231 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECT---------------------TSCCCCHHHHHHHHHHTTCCCS
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECC---------------------CCcCcchHHHHHHHHhcCCCCC
Confidence            9999999999985543  33344  777888877221                     111111   1112334567888


Q ss_pred             eEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCCCCCCCC
Q 038658          335 VLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLP  414 (831)
Q Consensus       335 ~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~  414 (831)
                      .|++++|......          ....+..+++|+.|++++|.+..+|.++.    ++|+.|++++|.+.+. |.+..++
T Consensus       232 ~L~Ls~N~l~~~~----------~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~----~~L~~L~Ls~N~l~~~-p~~~~l~  296 (312)
T 1wwl_A          232 GLDLSHNSLRDAA----------GAPSCDWPSQLNSLNLSFTGLKQVPKGLP----AKLSVLDLSYNRLDRN-PSPDELP  296 (312)
T ss_dssp             EEECTTSCCCSSC----------CCSCCCCCTTCCEEECTTSCCSSCCSSCC----SEEEEEECCSSCCCSC-CCTTTSC
T ss_pred             EEECCCCcCCccc----------chhhhhhcCCCCEEECCCCccChhhhhcc----CCceEEECCCCCCCCC-hhHhhCC
Confidence            8888777654321          11234456788888888888888887663    6888888888887655 5577888


Q ss_pred             CcceEEecccc
Q 038658          415 SLKHLAVRRMS  425 (831)
Q Consensus       415 ~L~~L~L~~~~  425 (831)
                      +|+.|++++++
T Consensus       297 ~L~~L~L~~N~  307 (312)
T 1wwl_A          297 QVGNLSLKGNP  307 (312)
T ss_dssp             EEEEEECTTCT
T ss_pred             CCCEEeccCCC
Confidence            88888887753

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.72  E-value=5.3e-17  Score=165.86  Aligned_cols=194  Identities=21%  Similarity=0.187  Sum_probs=129.5

Q ss_pred             EEEEeCCCCccccCccccCCCCCceeecCCCCCCccc-hhhhccCCccEEeecCcCccccccccccCcccccccccCCCC
Q 038658          195 RVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLP-ESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTD  273 (831)
Q Consensus       195 ~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~  273 (831)
                      ++++.+++.++.+|..+  .++|++|++++|.++.+| ..+.++++|++|++++|......|..++.+++|++|++++|.
T Consensus        14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (285)
T ss_dssp             CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence            68899999999998765  479999999999999887 568999999999999987555557889999999999999997


Q ss_pred             Ccccc-cCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCChhhh
Q 038658          274 SLEEM-PLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREA  352 (831)
Q Consensus       274 ~~~~~-p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  352 (831)
                      .++.+ |..++.+++|++|..                    . ...+..+....+.++++|++|++++|.....      
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~l--------------------~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------  144 (285)
T 1ozn_A           92 QLRSVDPATFHGLGRLHTLHL--------------------D-RCGLQELGPGLFRGLAALQYLYLQDNALQAL------  144 (285)
T ss_dssp             TCCCCCTTTTTTCTTCCEEEC--------------------T-TSCCCCCCTTTTTTCTTCCEEECCSSCCCCC------
T ss_pred             CccccCHHHhcCCcCCCEEEC--------------------C-CCcCCEECHhHhhCCcCCCEEECCCCccccc------
Confidence            45555 666888888888821                    1 1122233334455556666666655544321      


Q ss_pred             hhHHhhhcCCCCCCCccEEEEeeecCCCCCcc-CCCCCCCceeEEEEecCCCCCCCC-CCCCCCCcceEEeccc
Q 038658          353 ETQKGVLDMLKPHKNLEQFFISGYGGTKFPIW-LGDSSFSNLVTLKFEDCGMCTTLP-SVGQLPSLKHLAVRRM  424 (831)
Q Consensus       353 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~-~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~  424 (831)
                           ....+..+++|+.|++++|.+..+|.. +..  +++|+.|++++|.+.+..| .+..+++|+.|+++++
T Consensus       145 -----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  211 (285)
T 1ozn_A          145 -----PDDTFRDLGNLTHLFLHGNRISSVPERAFRG--LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN  211 (285)
T ss_dssp             -----CTTTTTTCTTCCEEECCSSCCCEECTTTTTT--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             -----CHhHhccCCCccEEECCCCcccccCHHHhcC--ccccCEEECCCCcccccCHhHccCcccccEeeCCCC
Confidence                 112344455666666666655555442 222  5556666666665554433 4555555565555553

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.71  E-value=5.8e-19  Score=201.45  Aligned_cols=160  Identities=15%  Similarity=0.187  Sum_probs=98.8

Q ss_pred             CCCCCccEEEEeeecCC----CCCc-c-------CC--CCCCCceeEEEEecCCCCCCCC-CCC-CCCCcceEEeccccC
Q 038658          363 KPHKNLEQFFISGYGGT----KFPI-W-------LG--DSSFSNLVTLKFEDCGMCTTLP-SVG-QLPSLKHLAVRRMSR  426 (831)
Q Consensus       363 ~~~~~L~~L~l~~~~~~----~~p~-~-------~~--~~~~~~L~~L~l~~~~~~~~~~-~l~-~l~~L~~L~L~~~~~  426 (831)
                      ..+++|+.|+++++...    ..|. |       +.  ...+++|++|++++|.+....+ .+. .+++|++|++.+|..
T Consensus        63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~  142 (594)
T 2p1m_B           63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG  142 (594)
T ss_dssp             HHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE
T ss_pred             hhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC
Confidence            34578999999986521    1121 1       10  0136799999999987654333 333 578999999998865


Q ss_pred             ceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCc-Cccc----CCCCCCCcccEEE
Q 038658          427 VRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCS-KLKG----TFPEHLPALEMLV  501 (831)
Q Consensus       427 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~-~l~~----~~p~~l~~L~~L~  501 (831)
                      +...+....    ...+++|++|++.++. +........+.....+++|++|++++|. .+..    .+...+++|+.|+
T Consensus       143 ~~~~~l~~~----~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~  217 (594)
T 2p1m_B          143 FSTDGLAAI----AATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLK  217 (594)
T ss_dssp             EEHHHHHHH----HHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEE
T ss_pred             CCHHHHHHH----HHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEe
Confidence            544211111    1138899999998865 2221111111113467899999999875 1210    1112468999999


Q ss_pred             EccccCcc---ccCCCCCccceEEEcCCC
Q 038658          502 IGGCEELL---VSITSLPALSKLEIGGCK  527 (831)
Q Consensus       502 l~~~~~l~---~~~~~l~~L~~L~l~~~~  527 (831)
                      +++|..+.   ..+..+++|++|.+..+.
T Consensus       218 L~~~~~~~~l~~~~~~~~~L~~L~l~~~~  246 (594)
T 2p1m_B          218 LNRAVPLEKLATLLQRAPQLEELGTGGYT  246 (594)
T ss_dssp             CCTTSCHHHHHHHHHHCTTCSEEECSBCC
T ss_pred             cCCCCcHHHHHHHHhcCCcceEccccccc
Confidence            99885433   334568889999987765

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.71  E-value=2.7e-18  Score=178.04  Aligned_cols=247  Identities=13%  Similarity=0.077  Sum_probs=177.7

Q ss_pred             ccCCcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccC
Q 038658          159 YNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLY  238 (831)
Q Consensus       159 ~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~  238 (831)
                      ..+++|+.|.+.+      +.+....+..+..+++|++|++++|.++.++. +..+++|++|++++|.++.+|    ..+
T Consensus        31 ~~~~~L~~L~L~~------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~----~~~   99 (317)
T 3o53_A           31 QSAWNVKELDLSG------NPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL----VGP   99 (317)
T ss_dssp             TTGGGCSEEECTT------SCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE----ECT
T ss_pred             ccCCCCCEEECcC------CccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc----CCC
Confidence            3466888885543      34444445566699999999999999987764 889999999999999988776    348


Q ss_pred             CccEEeecCcCccccccccccCcccccccccCCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeee
Q 038658          239 NLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLT  318 (831)
Q Consensus       239 ~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~  318 (831)
                      +|++|++++|.. ..++.  ..+++|++|++++|.+....|..++.+++|++|..                    . .+.
T Consensus       100 ~L~~L~l~~n~l-~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L--------------------s-~N~  155 (317)
T 3o53_A          100 SIETLHAANNNI-SRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL--------------------K-LNE  155 (317)
T ss_dssp             TCCEEECCSSCC-SEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEEC--------------------T-TSC
T ss_pred             CcCEEECCCCcc-CCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEEC--------------------C-CCC
Confidence            999999999864 44443  34788999999999854444556888888888822                    1 122


Q ss_pred             Ecccccccc-cCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEE
Q 038658          319 ISKLENAQL-DGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLK  397 (831)
Q Consensus       319 i~~l~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~  397 (831)
                      +..+....+ ..+++|+.|++++|....             ......+++|+.|++++|.+..+|..+..  +++|+.|+
T Consensus       156 l~~~~~~~~~~~l~~L~~L~L~~N~l~~-------------~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--l~~L~~L~  220 (317)
T 3o53_A          156 IDTVNFAELAASSDTLEHLNLQYNFIYD-------------VKGQVVFAKLKTLDLSSNKLAFMGPEFQS--AAGVTWIS  220 (317)
T ss_dssp             CCEEEGGGGGGGTTTCCEEECTTSCCCE-------------EECCCCCTTCCEEECCSSCCCEECGGGGG--GTTCSEEE
T ss_pred             CCcccHHHHhhccCcCCEEECCCCcCcc-------------cccccccccCCEEECCCCcCCcchhhhcc--cCcccEEE
Confidence            222222333 356889999997776532             12334578999999999999988887654  89999999


Q ss_pred             EecCCCCCCCCCCCCCCCcceEEeccccCceeeCccccCCCCCCCCCCcceeecccccccccc
Q 038658          398 FEDCGMCTTLPSVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDW  460 (831)
Q Consensus       398 l~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~  460 (831)
                      +++|.+....+.+..+++|+.|++++++........+.+     .+++|+.|.+.++..+...
T Consensus       221 L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~-----~~~~L~~l~l~~~~~l~~~  278 (317)
T 3o53_A          221 LRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS-----KNQRVQTVAKQTVKKLTGQ  278 (317)
T ss_dssp             CTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHH-----TCHHHHHHHHHHHHHHHSS
T ss_pred             CcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHh-----ccccceEEECCCchhccCC
Confidence            999988754447889999999999987654122222222     2788888888876655544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.70  E-value=4.1e-17  Score=165.78  Aligned_cols=203  Identities=19%  Similarity=0.100  Sum_probs=131.7

Q ss_pred             cceEEEEeCCCCccccCc-cccCCCCCceeecCCCCCCccch-hhhccCCccEEeecCcCccccccccccCccccccccc
Q 038658          192 QRLRVFSLCGYWISELPD-SIGDLRYLRYLNLSGTQIRTLPE-SVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNN  269 (831)
Q Consensus       192 ~~L~~L~L~~~~i~~lp~-~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l  269 (831)
                      +.|++|++++|.++.++. .|.++++|++|++++|.++.++. .+.++++|++|++++|......|..+.++++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            357778888887777743 67777888888888887776654 6777788888888877644444456777788888888


Q ss_pred             CCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccc-cccccCCCCcceEEEEeecCCCCCC
Q 038658          270 SNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLE-NAQLDGKKNLKVLMLRWTNSTDGSS  348 (831)
Q Consensus       270 ~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~-~~~l~~~~~L~~L~l~~~~~~~~~~  348 (831)
                      ++|......+..++++++|++|...                     .+.+..+. ...+.++++|+.|++++|.......
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~---------------------~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~  166 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVA---------------------HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC  166 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECC---------------------SSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred             CCCCccccCchhcccCCCCCEEECc---------------------CCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence            7777333333357777777777221                     11111211 2345566777777777665432200


Q ss_pred             hhhhhhHHhhhcCCCCCCCcc-EEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCC-CCCCCCCcceEEecccc
Q 038658          349 LREAETQKGVLDMLKPHKNLE-QFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLP-SVGQLPSLKHLAVRRMS  425 (831)
Q Consensus       349 ~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~  425 (831)
                              ..+..+..++.+. .|++++|.+..++.....  ..+|+.|++++|.+....+ .+..+++|+.|++++++
T Consensus       167 --------~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          167 --------TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK--EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             --------GGGHHHHTCTTCCEEEECCSSCCCEECTTSSC--SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred             --------HHhhhhhhccccceeeecCCCcccccCccccC--CCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence                    0111122223333 788888888887766554  4589999999998876555 46889999999998764

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.70  E-value=1.8e-16  Score=161.45  Aligned_cols=174  Identities=21%  Similarity=0.180  Sum_probs=97.0

Q ss_pred             cceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcccccccccC
Q 038658          192 QRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNS  270 (831)
Q Consensus       192 ~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~  270 (831)
                      +.+++|++++|.++.+ |..|..+++|++|++++|.++.+|.. +.+++|++|++++|. +..+|..+..+++|++|+++
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~  108 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVS  108 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECC
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECC
Confidence            3555566666655554 34555556666666666655555443 555556666665543 44555555555566666665


Q ss_pred             CCCCccccc-CCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCCh
Q 038658          271 NTDSLEEMP-LGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSL  349 (831)
Q Consensus       271 ~~~~~~~~p-~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~  349 (831)
                      +|. +..+| ..++.+++|++                                             |++++|.....   
T Consensus       109 ~N~-l~~l~~~~~~~l~~L~~---------------------------------------------L~L~~N~l~~~---  139 (290)
T 1p9a_G          109 FNR-LTSLPLGALRGLGELQE---------------------------------------------LYLKGNELKTL---  139 (290)
T ss_dssp             SSC-CCCCCSSTTTTCTTCCE---------------------------------------------EECTTSCCCCC---
T ss_pred             CCc-CcccCHHHHcCCCCCCE---------------------------------------------EECCCCCCCcc---
Confidence            555 33333 22444444444                                             44433333211   


Q ss_pred             hhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCCCCCCCCCcceEEecccc
Q 038658          350 REAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHLAVRRMS  425 (831)
Q Consensus       350 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~  425 (831)
                              ....+..+++|+.|++++|.+..+|..... .+++|+.|++++|.+....+.+...++|+.+++.+++
T Consensus       140 --------~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~-~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          140 --------PPGLLTPTPKLEKLSLANNNLTELPAGLLN-GLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             --------CTTTTTTCTTCCEEECTTSCCSCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             --------ChhhcccccCCCEEECCCCcCCccCHHHhc-CcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence                    122344566777777777777766654432 3677777777777766444456666677777777654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.68  E-value=3.8e-16  Score=157.85  Aligned_cols=175  Identities=23%  Similarity=0.292  Sum_probs=97.4

Q ss_pred             cceEEEEeCCCCccccC-ccccCCCCCceeecCCCCCCccchh-hhccCCccEEeecCcCcccccc-ccccCcccccccc
Q 038658          192 QRLRVFSLCGYWISELP-DSIGDLRYLRYLNLSGTQIRTLPES-VNKLYNLHTLSLEGCRGLRKLC-AGMGNLIKLHHLN  268 (831)
Q Consensus       192 ~~L~~L~L~~~~i~~lp-~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~  268 (831)
                      +.+++|++++|.++.+| ..|.++++|++|++++|.++.+|.. +.++++|++|++++|. +..+| ..+..+++|++|+
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~  115 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELR  115 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEE
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEE
Confidence            34566666666666553 3556666666666666666655543 3556666666666654 33333 3345666666666


Q ss_pred             cCCCCCccccc-CCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCC
Q 038658          269 NSNTDSLEEMP-LGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGS  347 (831)
Q Consensus       269 l~~~~~~~~~p-~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~  347 (831)
                      +++|. +..+| ..++.+++|                                             +.|++++|..... 
T Consensus       116 l~~n~-l~~~~~~~~~~l~~L---------------------------------------------~~L~Ls~n~l~~~-  148 (270)
T 2o6q_A          116 LDRNQ-LKSLPPRVFDSLTKL---------------------------------------------TYLSLGYNELQSL-  148 (270)
T ss_dssp             CCSSC-CCCCCTTTTTTCTTC---------------------------------------------CEEECCSSCCCCC-
T ss_pred             CCCCc-cCeeCHHHhCcCcCC---------------------------------------------CEEECCCCcCCcc-
Confidence            66665 22222 224444444                                             4444444433211 


Q ss_pred             ChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCC-CCCCCCCcceEEecccc
Q 038658          348 SLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLP-SVGQLPSLKHLAVRRMS  425 (831)
Q Consensus       348 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~  425 (831)
                                ....+..+++|+.|++++|.+..+|..... .+++|+.|++++|.+....+ .+..+++|+.|++++++
T Consensus       149 ----------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          149 ----------PKGVFDKLTSLKELRLYNNQLKRVPEGAFD-KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             ----------CTTTTTTCTTCCEEECCSSCCSCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ----------CHhHccCCcccceeEecCCcCcEeChhHhc-cCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence                      112245566777777777776666554221 26777777777777665444 46667777777777653

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.68  E-value=2.3e-16  Score=160.59  Aligned_cols=197  Identities=20%  Similarity=0.168  Sum_probs=143.8

Q ss_pred             CeeEEEEEccccCccccccccccCCcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCccccCccccCCCCC
Q 038658          138 NLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYL  217 (831)
Q Consensus       138 ~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L  217 (831)
                      .++.+.+..+....+.  ..+  .++++.|.+.      .+.+....+..+..+++|++|++++|.++.++.. +.+++|
T Consensus        11 ~l~~l~~~~~~l~~ip--~~~--~~~l~~L~L~------~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L   79 (290)
T 1p9a_G           11 SHLEVNCDKRNLTALP--PDL--PKDTTILHLS------ENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVL   79 (290)
T ss_dssp             TCCEEECTTSCCSSCC--SCC--CTTCCEEECT------TSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTC
T ss_pred             CccEEECCCCCCCcCC--CCC--CCCCCEEEcC------CCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcC
Confidence            4556655544443322  111  2578888554      3445544456666999999999999999998654 899999


Q ss_pred             ceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcccccccccCCCCCcccccCC-CCCccccccccceEe
Q 038658          218 RYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLG-IGKLTCLQTLCNFVV  296 (831)
Q Consensus       218 r~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~-~~~L~~L~~L~~~~~  296 (831)
                      ++|++++|.++.+|..+..+++|++|++++|......|..+..+++|++|++++|. +..+|.+ +..+++|+.|     
T Consensus        80 ~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L-----  153 (290)
T 1p9a_G           80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKL-----  153 (290)
T ss_dssp             CEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEE-----
T ss_pred             CEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEE-----
Confidence            99999999999999999999999999999987444344669999999999999998 5556654 5666666666     


Q ss_pred             cCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeee
Q 038658          297 GKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGY  376 (831)
Q Consensus       297 ~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~  376 (831)
                                                              +++.|.....           ....+..+++|+.|++++|
T Consensus       154 ----------------------------------------~L~~N~l~~l-----------~~~~~~~l~~L~~L~L~~N  182 (290)
T 1p9a_G          154 ----------------------------------------SLANNNLTEL-----------PAGLLNGLENLDTLLLQEN  182 (290)
T ss_dssp             ----------------------------------------ECTTSCCSCC-----------CTTTTTTCTTCCEEECCSS
T ss_pred             ----------------------------------------ECCCCcCCcc-----------CHHHhcCcCCCCEEECCCC
Confidence                                                    2222222111           1123456778888888888


Q ss_pred             cCCCCCccCCCCCCCceeEEEEecCCCC
Q 038658          377 GGTKFPIWLGDSSFSNLVTLKFEDCGMC  404 (831)
Q Consensus       377 ~~~~~p~~~~~~~~~~L~~L~l~~~~~~  404 (831)
                      .+..+|.++..  ..+|+.+++.+|.+.
T Consensus       183 ~l~~ip~~~~~--~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          183 SLYTIPKGFFG--SHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CCCCCCTTTTT--TCCCSEEECCSCCBC
T ss_pred             cCCccChhhcc--cccCCeEEeCCCCcc
Confidence            88888888775  678999999988753

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.67  E-value=3.2e-18  Score=177.12  Aligned_cols=81  Identities=17%  Similarity=0.117  Sum_probs=41.6

Q ss_pred             CCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCC--ccchhhh-------ccCCccEEeecCcCccccccccc--
Q 038658          190 KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIR--TLPESVN-------KLYNLHTLSLEGCRGLRKLCAGM--  258 (831)
Q Consensus       190 ~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~--~lp~~i~-------~L~~L~~L~l~~~~~~~~lp~~i--  258 (831)
                      ..++|+.|++++|.+ .+|..+...  |++|++++|.+.  .+|..+.       ++++|++|++++|...+.+|..+  
T Consensus        41 ~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  117 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE  117 (312)
T ss_dssp             EEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred             cCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence            344455555555555 455444332  555555555553  2444443       45555555555554444455543  


Q ss_pred             cCcccccccccCCCC
Q 038658          259 GNLIKLHHLNNSNTD  273 (831)
Q Consensus       259 ~~L~~L~~L~l~~~~  273 (831)
                      +.+++|++|++++|.
T Consensus       118 ~~l~~L~~L~Ls~N~  132 (312)
T 1wwl_A          118 ATGPDLNILNLRNVS  132 (312)
T ss_dssp             CCSCCCSEEEEESCB
T ss_pred             hcCCCccEEEccCCC
Confidence            555555555555555

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.67  E-value=2.4e-16  Score=162.31  Aligned_cols=190  Identities=19%  Similarity=0.265  Sum_probs=104.2

Q ss_pred             CCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCccccccccc
Q 038658          190 KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNN  269 (831)
Q Consensus       190 ~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l  269 (831)
                      .+++|++|++++|.+..+| .+..+++|++|++++|.+..+|. +..+++|++|++++|. +..+| .++.+++|++|++
T Consensus        39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l  114 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDL  114 (308)
T ss_dssp             HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEEC
T ss_pred             HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEEC
Confidence            3445555555555555554 35555555555555555555554 5555555555555544 33333 3555555555555


Q ss_pred             CCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCCh
Q 038658          270 SNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSL  349 (831)
Q Consensus       270 ~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~  349 (831)
                      ++|. +..+|. ++.+++|++|...                     .+.+..+..  +..+++|+.|+++.|.....   
T Consensus       115 ~~n~-l~~~~~-l~~l~~L~~L~l~---------------------~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~---  166 (308)
T 1h6u_A          115 TSTQ-ITDVTP-LAGLSNLQVLYLD---------------------LNQITNISP--LAGLTNLQYLSIGNAQVSDL---  166 (308)
T ss_dssp             TTSC-CCCCGG-GTTCTTCCEEECC---------------------SSCCCCCGG--GGGCTTCCEEECCSSCCCCC---
T ss_pred             CCCC-CCCchh-hcCCCCCCEEECC---------------------CCccCcCcc--ccCCCCccEEEccCCcCCCC---
Confidence            5555 333332 4445555444110                     001111111  33345556666655543221   


Q ss_pred             hhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCCCCCCCCCcceEEecccc
Q 038658          350 REAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHLAVRRMS  425 (831)
Q Consensus       350 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~  425 (831)
                                ..+..+++|+.|++++|.+..++. +.  .+++|+.|++++|.+.+.. .+..+++|+.|++++++
T Consensus       167 ----------~~l~~l~~L~~L~l~~n~l~~~~~-l~--~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          167 ----------TPLANLSKLTTLKADDNKISDISP-LA--SLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQT  228 (308)
T ss_dssp             ----------GGGTTCTTCCEEECCSSCCCCCGG-GG--GCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEE
T ss_pred             ----------hhhcCCCCCCEEECCCCccCcChh-hc--CCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCe
Confidence                      115566777788887777776665 22  3678888888888775443 46777888888887754

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.67  E-value=3.4e-16  Score=158.31  Aligned_cols=175  Identities=21%  Similarity=0.221  Sum_probs=99.5

Q ss_pred             CCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCccccccccc
Q 038658          190 KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNN  269 (831)
Q Consensus       190 ~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l  269 (831)
                      .+++|+.|++++|.++.++ .++.+++|++|++++|.++.++ .++++++|++|++++|......|..++.+++|++|++
T Consensus        39 ~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  116 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL  116 (272)
T ss_dssp             HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence            5666777777777766654 4667777777777777776653 6677777777777776533333334677777777777


Q ss_pred             CCCCCcccccCC-CCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCC
Q 038658          270 SNTDSLEEMPLG-IGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSS  348 (831)
Q Consensus       270 ~~~~~~~~~p~~-~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~  348 (831)
                      ++|. +..+|.. ++.+++|++|                                             ++++|.....  
T Consensus       117 ~~n~-l~~~~~~~~~~l~~L~~L---------------------------------------------~L~~n~l~~~--  148 (272)
T 3rfs_A          117 VENQ-LQSLPDGVFDKLTNLTYL---------------------------------------------NLAHNQLQSL--  148 (272)
T ss_dssp             TTSC-CCCCCTTTTTTCTTCCEE---------------------------------------------ECCSSCCCCC--
T ss_pred             CCCc-CCccCHHHhccCCCCCEE---------------------------------------------ECCCCccCcc--
Confidence            7776 3333322 4444444444                                             2212211100  


Q ss_pred             hhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCC-CCCCCCCcceEEeccc
Q 038658          349 LREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLP-SVGQLPSLKHLAVRRM  424 (831)
Q Consensus       349 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~  424 (831)
                               ....+..+++|+.|++++|.+..+|..... .+++|+.|++++|.+.+..+ .++.+++|+.|+++++
T Consensus       149 ---------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  215 (272)
T 3rfs_A          149 ---------PKGVFDKLTNLTELDLSYNQLQSLPEGVFD-KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN  215 (272)
T ss_dssp             ---------CTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             ---------CHHHhccCccCCEEECCCCCcCccCHHHhc-CCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence                     111233445555555555555555443211 25667777777776665444 3566666666666654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.67  E-value=4.5e-16  Score=154.24  Aligned_cols=95  Identities=18%  Similarity=0.256  Sum_probs=72.6

Q ss_pred             ceEEEEeCCCCccccCc-cccCCCCCceeecCCCC-CCccch-hhhccCCccEEeecCcCcccccc-ccccCcccccccc
Q 038658          193 RLRVFSLCGYWISELPD-SIGDLRYLRYLNLSGTQ-IRTLPE-SVNKLYNLHTLSLEGCRGLRKLC-AGMGNLIKLHHLN  268 (831)
Q Consensus       193 ~L~~L~L~~~~i~~lp~-~~~~l~~Lr~L~L~~~~-i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~  268 (831)
                      .|++|++++|.++.+|. .|+.+++|++|++++|. ++.+|. .+.++++|++|++++|..+..+| ..+..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            78899999999888854 78889999999999986 888875 67888999999998833455555 4578888899999


Q ss_pred             cCCCCCcccccCCCCCccccc
Q 038658          269 NSNTDSLEEMPLGIGKLTCLQ  289 (831)
Q Consensus       269 l~~~~~~~~~p~~~~~L~~L~  289 (831)
                      +++|. +..+|. ++.+++|+
T Consensus       112 l~~n~-l~~lp~-~~~l~~L~  130 (239)
T 2xwt_C          112 IFNTG-LKMFPD-LTKVYSTD  130 (239)
T ss_dssp             EEEEC-CCSCCC-CTTCCBCC
T ss_pred             CCCCC-Cccccc-cccccccc
Confidence            88887 555664 54444443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.66  E-value=1.4e-16  Score=175.02  Aligned_cols=241  Identities=14%  Similarity=0.116  Sum_probs=125.2

Q ss_pred             CcceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCccccccccc
Q 038658          191 LQRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNN  269 (831)
Q Consensus       191 l~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l  269 (831)
                      +++|++|+|++|.++.+ |..|+.+++|++|+|++|.++.+++ ++.+++|++|++++|. +..+|.    .++|++|++
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~----~~~L~~L~L  106 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV----GPSIETLHA  106 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE----CTTCCEEEC
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC----CCCcCEEEC
Confidence            34666666666666655 3556666666666666666665443 6666666666666653 333332    256666666


Q ss_pred             CCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCCh
Q 038658          270 SNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSL  349 (831)
Q Consensus       270 ~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~  349 (831)
                      ++|. +..+|.  ..+++|+.|..                    . .+.+..+....+..+++|+.|++++|.....   
T Consensus       107 ~~N~-l~~~~~--~~l~~L~~L~L--------------------~-~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---  159 (487)
T 3oja_A          107 ANNN-ISRVSC--SRGQGKKNIYL--------------------A-NNKITMLRDLDEGCRSRVQYLDLKLNEIDTV---  159 (487)
T ss_dssp             CSSC-CCCEEE--CCCSSCEEEEC--------------------C-SSCCCSGGGBCGGGGSSEEEEECTTSCCCEE---
T ss_pred             cCCc-CCCCCc--cccCCCCEEEC--------------------C-CCCCCCCCchhhcCCCCCCEEECCCCCCCCc---
Confidence            6665 333322  12344444411                    1 2222233333444555566666655543221   


Q ss_pred             hhhhhHHhhhcCCC-CCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCCCCCCCCCcceEEeccccCce
Q 038658          350 REAETQKGVLDMLK-PHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHLAVRRMSRVR  428 (831)
Q Consensus       350 ~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~  428 (831)
                              .+..+. .+++|+.|++++|.+..+|....   +++|+.|++++|.+.+..|.+..+++|+.|+++++. +.
T Consensus       160 --------~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~---l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~-l~  227 (487)
T 3oja_A          160 --------NFAELAASSDTLEHLNLQYNFIYDVKGQVV---FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LV  227 (487)
T ss_dssp             --------EGGGGGGGTTTCCEEECTTSCCCEEECCCC---CTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CC
T ss_pred             --------ChHHHhhhCCcccEEecCCCcccccccccc---CCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc-Cc
Confidence                    112222 34666666666666665544332   566777777776666555556666677777776643 33


Q ss_pred             eeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCc
Q 038658          429 RLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKL  486 (831)
Q Consensus       429 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l  486 (831)
                      .++..+      ..+++|+.|++.+.+-....    .+..+..++.|+.+.+..+..+
T Consensus       228 ~lp~~l------~~l~~L~~L~l~~N~l~c~~----~~~~~~~l~~L~~l~~~~~~~~  275 (487)
T 3oja_A          228 LIEKAL------RFSQNLEHFDLRGNGFHCGT----LRDFFSKNQRVQTVAKQTVKKL  275 (487)
T ss_dssp             EECTTC------CCCTTCCEEECTTCCBCHHH----HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccchhh------ccCCCCCEEEcCCCCCcCcc----hHHHHHhCCCCcEEeccccccc
Confidence            333221      22566666666653321111    1111345667777766543333

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.64  E-value=6.8e-16  Score=156.75  Aligned_cols=94  Identities=20%  Similarity=0.174  Sum_probs=76.4

Q ss_pred             EEEeCCCCccccCccccCCCCCceeecCCCCCCccch-hhhccCCccEEeecCcCccccccccccCcccccccccCCCCC
Q 038658          196 VFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPE-SVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDS  274 (831)
Q Consensus       196 ~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~  274 (831)
                      +.+..+..+..+|..+.  .+|++|++++|.++.+|. .+.++++|++|++++|......+..++++++|++|++++|.+
T Consensus        11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l   88 (276)
T 2z62_A           11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI   88 (276)
T ss_dssp             EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence            45566667888888775  689999999999998875 889999999999999864444455799999999999999984


Q ss_pred             cccccCCCCCccccccc
Q 038658          275 LEEMPLGIGKLTCLQTL  291 (831)
Q Consensus       275 ~~~~p~~~~~L~~L~~L  291 (831)
                      ....|..++++++|++|
T Consensus        89 ~~~~~~~~~~l~~L~~L  105 (276)
T 2z62_A           89 QSLALGAFSGLSSLQKL  105 (276)
T ss_dssp             CEECTTTTTTCTTCCEE
T ss_pred             CccChhhhcCCccccEE
Confidence            44444668888888887

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.64  E-value=2.1e-16  Score=173.62  Aligned_cols=217  Identities=14%  Similarity=0.079  Sum_probs=148.7

Q ss_pred             CCcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCc
Q 038658          161 IQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNL  240 (831)
Q Consensus       161 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L  240 (831)
                      +++|+.|.+.+      +.+....|..+..+++|++|+|++|.++.++. ++.+++|++|+|++|.++.+|..    ++|
T Consensus        33 ~~~L~~L~Ls~------n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~----~~L  101 (487)
T 3oja_A           33 AWNVKELDLSG------NPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG----PSI  101 (487)
T ss_dssp             GGGCCEEECCS------SCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEEC----TTC
T ss_pred             CCCccEEEeeC------CcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCC----CCc
Confidence            44778875543      34444444556688888888888888876654 78888888888888888777643    788


Q ss_pred             cEEeecCcCccccccccccCcccccccccCCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEc
Q 038658          241 HTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTIS  320 (831)
Q Consensus       241 ~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~  320 (831)
                      ++|++++|... .+|.  ..+++|+.|++++|.+.+..|..++.+++|+.|..                    . .+.+.
T Consensus       102 ~~L~L~~N~l~-~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L--------------------s-~N~l~  157 (487)
T 3oja_A          102 ETLHAANNNIS-RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL--------------------K-LNEID  157 (487)
T ss_dssp             CEEECCSSCCC-CEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEEC--------------------T-TSCCC
T ss_pred             CEEECcCCcCC-CCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEEC--------------------C-CCCCC
Confidence            88888887643 3332  24677888888888855555667788888887721                    1 22222


Q ss_pred             cccccccc-CCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEe
Q 038658          321 KLENAQLD-GKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFE  399 (831)
Q Consensus       321 ~l~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~  399 (831)
                      ......+. .+++|+.|++++|.....             .....+++|+.|++++|.+..+|..+..  +++|+.|+++
T Consensus       158 ~~~~~~l~~~l~~L~~L~Ls~N~l~~~-------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--l~~L~~L~Ls  222 (487)
T 3oja_A          158 TVNFAELAASSDTLEHLNLQYNFIYDV-------------KGQVVFAKLKTLDLSSNKLAFMGPEFQS--AAGVTWISLR  222 (487)
T ss_dssp             EEEGGGGGGGTTTCCEEECTTSCCCEE-------------ECCCCCTTCCEEECCSSCCCEECGGGGG--GTTCSEEECT
T ss_pred             CcChHHHhhhCCcccEEecCCCccccc-------------cccccCCCCCEEECCCCCCCCCCHhHcC--CCCccEEEec
Confidence            32333343 567888888877765321             2233577888888888888877776654  7888888888


Q ss_pred             cCCCCCCCCCCCCCCCcceEEeccccCc
Q 038658          400 DCGMCTTLPSVGQLPSLKHLAVRRMSRV  427 (831)
Q Consensus       400 ~~~~~~~~~~l~~l~~L~~L~L~~~~~l  427 (831)
                      +|.+.+..+.++.+++|+.|++++++..
T Consensus       223 ~N~l~~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          223 NNKLVLIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             TSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred             CCcCcccchhhccCCCCCEEEcCCCCCc
Confidence            8887754446778888888888876543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.64  E-value=1.5e-15  Score=153.38  Aligned_cols=179  Identities=20%  Similarity=0.218  Sum_probs=130.5

Q ss_pred             CcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCccccCcc-ccCCCCCceeecCCCCCCccch-hhhccCC
Q 038658          162 QHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDS-IGDLRYLRYLNLSGTQIRTLPE-SVNKLYN  239 (831)
Q Consensus       162 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~-~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~  239 (831)
                      ++++.|.+.+      +.+....+..+..+++|++|++++|.++.+|.. |..+++|++|++++|.++.+|. .+..+++
T Consensus        37 ~~l~~L~l~~------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  110 (270)
T 2o6q_A           37 ADTKKLDLQS------NKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVN  110 (270)
T ss_dssp             TTCSEEECCS------SCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSS
T ss_pred             CCCCEEECcC------CCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccC
Confidence            5688885543      333332233556999999999999999999755 5899999999999999998875 5689999


Q ss_pred             ccEEeecCcCccccccccccCcccccccccCCCCCcccccCC-CCCccccccccceEecCCCCCcchhhhccccccCeee
Q 038658          240 LHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLG-IGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLT  318 (831)
Q Consensus       240 L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~-~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~  318 (831)
                      |++|++++|......|..++.+++|++|++++|. +..+|.. ++.+++|+.|                           
T Consensus       111 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L---------------------------  162 (270)
T 2o6q_A          111 LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKEL---------------------------  162 (270)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE---------------------------
T ss_pred             CCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCccccee---------------------------
Confidence            9999999987555455668999999999999998 5566654 6667766666                           


Q ss_pred             EcccccccccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEE
Q 038658          319 ISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKF  398 (831)
Q Consensus       319 i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l  398 (831)
                                        +++.|.....           ....+..+++|+.|++++|.+..+|..... .+++|+.|++
T Consensus       163 ------------------~L~~n~l~~~-----------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~l  212 (270)
T 2o6q_A          163 ------------------RLYNNQLKRV-----------PEGAFDKLTELKTLKLDNNQLKRVPEGAFD-SLEKLKMLQL  212 (270)
T ss_dssp             ------------------ECCSSCCSCC-----------CTTTTTTCTTCCEEECCSSCCSCCCTTTTT-TCTTCCEEEC
T ss_pred             ------------------EecCCcCcEe-----------ChhHhccCCCcCEEECCCCcCCcCCHHHhc-cccCCCEEEe
Confidence                              2222222111           112355567788888888887777765332 3788999999


Q ss_pred             ecCCCC
Q 038658          399 EDCGMC  404 (831)
Q Consensus       399 ~~~~~~  404 (831)
                      ++|.+.
T Consensus       213 ~~N~~~  218 (270)
T 2o6q_A          213 QENPWD  218 (270)
T ss_dssp             CSSCBC
T ss_pred             cCCCee
Confidence            988754

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.62  E-value=5.3e-16  Score=156.87  Aligned_cols=196  Identities=20%  Similarity=0.248  Sum_probs=128.8

Q ss_pred             ccccCCcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchh-hh
Q 038658          157 DLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPES-VN  235 (831)
Q Consensus       157 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~-i~  235 (831)
                      ....+++|+.|.+.+..      +  ...+.+..+++|++|++++|.++.++ .++.+++|++|++++|.++.+|.. ++
T Consensus        36 ~~~~l~~L~~L~l~~~~------i--~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~  106 (272)
T 3rfs_A           36 TQNELNSIDQIIANNSD------I--KSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFD  106 (272)
T ss_dssp             CHHHHTTCCEEECTTSC------C--CCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred             ccccccceeeeeeCCCC------c--ccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhc
Confidence            34556777777554322      1  12345668889999999999988864 788899999999999999887654 68


Q ss_pred             ccCCccEEeecCcCccccccccccCcccccccccCCCCCcccccCC-CCCccccccccceEecCCCCCcchhhhcccccc
Q 038658          236 KLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLG-IGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLR  314 (831)
Q Consensus       236 ~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~-~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~  314 (831)
                      ++++|++|++++|......|..++.+++|++|++++|. +..+|.. ++.+++|+.|                       
T Consensus       107 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L-----------------------  162 (272)
T 3rfs_A          107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTEL-----------------------  162 (272)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE-----------------------
T ss_pred             CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEE-----------------------
Confidence            89999999999987444444457889999999999997 4455543 5666666666                       


Q ss_pred             CeeeEcccccccccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCcee
Q 038658          315 GTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLV  394 (831)
Q Consensus       315 ~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~  394 (831)
                                            ++++|.....           ....+..+++|+.|++++|.+..++..... .+++|+
T Consensus       163 ----------------------~l~~n~l~~~-----------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~  208 (272)
T 3rfs_A          163 ----------------------DLSYNQLQSL-----------PEGVFDKLTQLKDLRLYQNQLKSVPDGVFD-RLTSLQ  208 (272)
T ss_dssp             ----------------------ECCSSCCCCC-----------CTTTTTTCTTCCEEECCSSCCSCCCTTTTT-TCTTCC
T ss_pred             ----------------------ECCCCCcCcc-----------CHHHhcCCccCCEEECCCCcCCccCHHHHh-CCcCCC
Confidence                                  2222222111           112244556666666666666665543221 267777


Q ss_pred             EEEEecCCCCCCCCCCCCCCCcceEEecccc
Q 038658          395 TLKFEDCGMCTTLPSVGQLPSLKHLAVRRMS  425 (831)
Q Consensus       395 ~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~  425 (831)
                      .|++++|.+.      +.+++|+.+.+..+.
T Consensus       209 ~L~l~~N~~~------~~~~~l~~l~~~~n~  233 (272)
T 3rfs_A          209 YIWLHDNPWD------CTCPGIRYLSEWINK  233 (272)
T ss_dssp             EEECCSSCBC------CCTTTTHHHHHHHHH
T ss_pred             EEEccCCCcc------ccCcHHHHHHHHHHh
Confidence            7777777554      334566666665544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.61  E-value=1.4e-14  Score=152.31  Aligned_cols=236  Identities=18%  Similarity=0.210  Sum_probs=174.4

Q ss_pred             cEEeEcCCcCcccCCCCCC-CcccEEEEccccC--cc-ccCCCCCccceEEEcCCCCccccccccccCCCCceeeccccc
Q 038658          476 RELEVIGCSKLKGTFPEHL-PALEMLVIGGCEE--LL-VSITSLPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLN  551 (831)
Q Consensus       476 ~~L~l~~c~~l~~~~p~~l-~~L~~L~l~~~~~--l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (831)
                      ++++.++ ++++ .+|..+ +++++|++++|..  ++ ..+..+++|++|++++|......                   
T Consensus        12 ~~v~C~~-~~Lt-~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i-------------------   70 (350)
T 4ay9_X           12 RVFLCQE-SKVT-EIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI-------------------   70 (350)
T ss_dssp             TEEEEES-TTCC-SCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEE-------------------
T ss_pred             CEEEecC-CCCC-ccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCcc-------------------
Confidence            4566555 6787 888765 5799999999873  33 35678999999999999855422                   


Q ss_pred             hhhccCCCCCCCCCCcEEEEccCCCcchhcccCCcccccCCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEe
Q 038658          552 QVLLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLL  631 (831)
Q Consensus       552 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l  631 (831)
                          ....+..++++.++.+.++.+++.   ++...+..+++|++|+++++ ++..++...+...       .++..|++
T Consensus        71 ----~~~~f~~L~~l~~~l~~~~N~l~~---l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~-------~~l~~l~l  135 (350)
T 4ay9_X           71 ----EADVFSNLPKLHEIRIEKANNLLY---INPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHS-------LQKVLLDI  135 (350)
T ss_dssp             ----CTTSBCSCTTCCEEEEEEETTCCE---ECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCB-------SSCEEEEE
T ss_pred             ----ChhHhhcchhhhhhhcccCCcccc---cCchhhhhcccccccccccc-ccccCCchhhccc-------chhhhhhh
Confidence                112345677888777766666665   56667789999999999984 6666654322111       35778888


Q ss_pred             ccCCCCccccc-ccCCC-CCCCeEEEecCCCCccccCCCC-CCCccEEEEecCCCCcccccc-cccCCCCCcCeEEEccC
Q 038658          632 NDCKGLVKLPQ-SLLSL-SSLREIEIYNCSSFVSFPEVAL-PSKVRSISIHRCDALKSLPEA-WMCDANLSLEILTISRC  707 (831)
Q Consensus       632 ~~~~~~~~l~~-~l~~l-~~L~~L~L~~~~~l~~l~~~~~-~~~L~~L~l~~c~~l~~l~~~-~~~~~l~~L~~L~l~~c  707 (831)
                      .++..+..++. .+..+ ..++.|++++| .++.++...+ ..+|++|++.+++.++.+|.. +..  +++|++|+++++
T Consensus       136 ~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~--l~~L~~LdLs~N  212 (350)
T 4ay9_X          136 QDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHG--ASGPVILDISRT  212 (350)
T ss_dssp             ESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTT--EECCSEEECTTS
T ss_pred             ccccccccccccchhhcchhhhhhccccc-cccCCChhhccccchhHHhhccCCcccCCCHHHhcc--CcccchhhcCCC
Confidence            88777777764 44554 46888999998 7888887666 678999999998999999865 444  899999999996


Q ss_pred             CCcceeccCCCCCCCceEEEecCCCCCccccccCccCCcccccCccccceEEEec
Q 038658          708 HSLTYIAEVQLPPSLKNVVIRNCDNVRTLTVEEGIQSSSSRRYTSSLLEHLHIES  762 (831)
Q Consensus       708 ~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~l~~~~L~~L~i~~  762 (831)
                       .++.+|... +.+|++|.+.+|++++.+  |. +..     +++  |+.+++.+
T Consensus       213 -~l~~lp~~~-~~~L~~L~~l~~~~l~~l--P~-l~~-----l~~--L~~l~l~~  255 (350)
T 4ay9_X          213 -RIHSLPSYG-LENLKKLRARSTYNLKKL--PT-LEK-----LVA--LMEASLTY  255 (350)
T ss_dssp             -CCCCCCSSS-CTTCCEEECTTCTTCCCC--CC-TTT-----CCS--CCEEECSC
T ss_pred             -CcCccChhh-hccchHhhhccCCCcCcC--CC-chh-----CcC--hhhCcCCC
Confidence             688888654 568999999999999988  42 444     666  88888865

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.60  E-value=2.7e-15  Score=154.39  Aligned_cols=195  Identities=19%  Similarity=0.228  Sum_probs=140.2

Q ss_pred             cccCCcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhcc
Q 038658          158 LYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKL  237 (831)
Q Consensus       158 ~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L  237 (831)
                      ..++++|+.|.+.+..      +. .+ +.+..+++|++|++++|.++.++. +..+++|++|++++|.++.+| .+..+
T Consensus        37 ~~~l~~L~~L~l~~~~------i~-~l-~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l  106 (308)
T 1h6u_A           37 QADLDGITTLSAFGTG------VT-TI-EGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGL  106 (308)
T ss_dssp             HHHHHTCCEEECTTSC------CC-CC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTC
T ss_pred             HHHcCCcCEEEeeCCC------cc-Cc-hhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCC
Confidence            3456677777554322      11 22 345678889999999998888876 888899999999999888875 68888


Q ss_pred             CCccEEeecCcCccccccccccCcccccccccCCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCee
Q 038658          238 YNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTL  317 (831)
Q Consensus       238 ~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l  317 (831)
                      ++|++|++++|. +..+|. +..+++|++|++++|. +..++. ++.+++|+.|...                     .+
T Consensus       107 ~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~---------------------~n  161 (308)
T 1h6u_A          107 QSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIG---------------------NA  161 (308)
T ss_dssp             TTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECC---------------------SS
T ss_pred             CCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEcc---------------------CC
Confidence            999999999876 555654 8888999999998887 555554 7777777777221                     11


Q ss_pred             eEcccccccccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEE
Q 038658          318 TISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLK  397 (831)
Q Consensus       318 ~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~  397 (831)
                      .+..+..  +..+++|+.|++++|.....             ..+..+++|+.|++++|.+..++. +.  .+++|+.|+
T Consensus       162 ~l~~~~~--l~~l~~L~~L~l~~n~l~~~-------------~~l~~l~~L~~L~L~~N~l~~~~~-l~--~l~~L~~L~  223 (308)
T 1h6u_A          162 QVSDLTP--LANLSKLTTLKADDNKISDI-------------SPLASLPNLIEVHLKNNQISDVSP-LA--NTSNLFIVT  223 (308)
T ss_dssp             CCCCCGG--GTTCTTCCEEECCSSCCCCC-------------GGGGGCTTCCEEECTTSCCCBCGG-GT--TCTTCCEEE
T ss_pred             cCCCChh--hcCCCCCCEEECCCCccCcC-------------hhhcCCCCCCEEEccCCccCcccc-cc--CCCCCCEEE
Confidence            2222222  56677888888877765432             115667899999999999888774 33  389999999


Q ss_pred             EecCCCCC
Q 038658          398 FEDCGMCT  405 (831)
Q Consensus       398 l~~~~~~~  405 (831)
                      +++|.+..
T Consensus       224 l~~N~i~~  231 (308)
T 1h6u_A          224 LTNQTITN  231 (308)
T ss_dssp             EEEEEEEC
T ss_pred             ccCCeeec
Confidence            99987643

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.60  E-value=1.7e-14  Score=151.67  Aligned_cols=241  Identities=17%  Similarity=0.156  Sum_probs=147.9

Q ss_pred             cEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCC-CCCCCCCcceEEeccccCceeeCccccCCCCCCCCCCcc
Q 038658          369 EQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLP-SVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLE  447 (831)
Q Consensus       369 ~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~  447 (831)
                      +.++.++++.+.+|..+    .+++++|++++|.+....+ .+.++++|++|+|+++...+.++...             
T Consensus        12 ~~v~C~~~~Lt~iP~~l----~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~-------------   74 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL----PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV-------------   74 (350)
T ss_dssp             TEEEEESTTCCSCCTTC----CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTS-------------
T ss_pred             CEEEecCCCCCccCcCc----CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhH-------------
Confidence            45666777778888765    3678889999888765444 57888888888888876444443211             


Q ss_pred             eeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCCCCCCcccEEEEccccCccccCCCCCccceEEEcCCC
Q 038658          448 TLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPEHLPALEMLVIGGCEELLVSITSLPALSKLEIGGCK  527 (831)
Q Consensus       448 ~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~  527 (831)
                                           +..+++++++.+.++++++ .+|.                 ..+..+++|+.|++++|.
T Consensus        75 ---------------------f~~L~~l~~~l~~~~N~l~-~l~~-----------------~~f~~l~~L~~L~l~~n~  115 (350)
T 4ay9_X           75 ---------------------FSNLPKLHEIRIEKANNLL-YINP-----------------EAFQNLPNLQYLLISNTG  115 (350)
T ss_dssp             ---------------------BCSCTTCCEEEEEEETTCC-EECT-----------------TSBCCCTTCCEEEEEEEC
T ss_pred             ---------------------hhcchhhhhhhcccCCccc-ccCc-----------------hhhhhccccccccccccc
Confidence                                 2345555555555555665 3321                 123344555555555544


Q ss_pred             CccccccccccCCCCceeeccccchhhccCCCCCCCCCCcEEEEccCCCcchhcccCCcccccC-CCccEEeeecCCCcc
Q 038658          528 KVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQDI-SSLKRLTIGWCPTLQ  606 (831)
Q Consensus       528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l-~~L~~L~l~~c~~l~  606 (831)
                      ......                        .......++..+++.++..++.   .+...+..+ ..++.|++++ ++++
T Consensus       116 l~~~~~------------------------~~~~~~~~l~~l~l~~~~~i~~---l~~~~f~~~~~~l~~L~L~~-N~i~  167 (350)
T 4ay9_X          116 IKHLPD------------------------VHKIHSLQKVLLDIQDNINIHT---IERNSFVGLSFESVILWLNK-NGIQ  167 (350)
T ss_dssp             CSSCCC------------------------CTTCCBSSCEEEEEESCTTCCE---ECTTSSTTSBSSCEEEECCS-SCCC
T ss_pred             cccCCc------------------------hhhcccchhhhhhhcccccccc---ccccchhhcchhhhhhcccc-cccc
Confidence            221110                        0111233455555555554443   333333343 4577788877 5777


Q ss_pred             cchhhhhhhHhhhhcccCCccEEEeccCCCCccccc-ccCCCCCCCeEEEecCCCCccccCCCCCCCccEEEEecCCCCc
Q 038658          607 SLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQ-SLLSLSSLREIEIYNCSSFVSFPEVALPSKVRSISIHRCDALK  685 (831)
Q Consensus       607 ~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~L~~L~l~~c~~l~  685 (831)
                      .++...+..        .+|++|++.+++.++.+|. .+..+++|++|++++| .++.+|.. .+.+|+.|.+.+|..++
T Consensus       168 ~i~~~~f~~--------~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~-~~~~L~~L~~l~~~~l~  237 (350)
T 4ay9_X          168 EIHNSAFNG--------TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSY-GLENLKKLRARSTYNLK  237 (350)
T ss_dssp             EECTTSSTT--------EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSS-SCTTCCEEECTTCTTCC
T ss_pred             CCChhhccc--------cchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChh-hhccchHhhhccCCCcC
Confidence            776554332        2588888887777777775 4677888888888887 67777753 36778888888888888


Q ss_pred             ccccccccCCCCCcCeEEEcc
Q 038658          686 SLPEAWMCDANLSLEILTISR  706 (831)
Q Consensus       686 ~l~~~~~~~~l~~L~~L~l~~  706 (831)
                      .+|. +..  +++|+.+++.+
T Consensus       238 ~lP~-l~~--l~~L~~l~l~~  255 (350)
T 4ay9_X          238 KLPT-LEK--LVALMEASLTY  255 (350)
T ss_dssp             CCCC-TTT--CCSCCEEECSC
T ss_pred             cCCC-chh--CcChhhCcCCC
Confidence            8774 333  77888887754

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.60  E-value=1.5e-14  Score=143.21  Aligned_cols=175  Identities=15%  Similarity=0.128  Sum_probs=90.5

Q ss_pred             CCCCcEEEEccCCCcchhcccCCcccccCCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEeccCCCCccccc
Q 038658          563 LPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQ  642 (831)
Q Consensus       563 l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~  642 (831)
                      +++|++|+++++..++.   .+...+..+++|++|++++|+.++.++...+...       ++|++|++++|... .+|.
T Consensus        54 l~~L~~L~l~~n~~l~~---i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l-------~~L~~L~l~~n~l~-~lp~  122 (239)
T 2xwt_C           54 LPNISRIYVSIDVTLQQ---LESHSFYNLSKVTHIEIRNTRNLTYIDPDALKEL-------PLLKFLGIFNTGLK-MFPD  122 (239)
T ss_dssp             CTTCCEEEEECCSSCCE---ECTTTEESCTTCCEEEEEEETTCCEECTTSEECC-------TTCCEEEEEEECCC-SCCC
T ss_pred             CCCCcEEeCCCCCCcce---eCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCC-------CCCCEEeCCCCCCc-cccc
Confidence            44444444444432222   3333345556666666665555555543332222       35666666665533 3554


Q ss_pred             ccCCCCCCC---eEEEecCCCCccccCCCC--CCCcc-EEEEecCCCCcccccccccCCCCCcCeEEEccCCCcceeccC
Q 038658          643 SLLSLSSLR---EIEIYNCSSFVSFPEVAL--PSKVR-SISIHRCDALKSLPEAWMCDANLSLEILTISRCHSLTYIAEV  716 (831)
Q Consensus       643 ~l~~l~~L~---~L~L~~~~~l~~l~~~~~--~~~L~-~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~  716 (831)
                       +..+++|+   +|++++|+.++.++...+  +++|+ +|++++|. ++.+|.....  .++|++|++++|+.++.++..
T Consensus       123 -~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~--~~~L~~L~L~~n~~l~~i~~~  198 (239)
T 2xwt_C          123 -LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFN--GTKLDAVYLNKNKYLTVIDKD  198 (239)
T ss_dssp             -CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTT--TCEEEEEECTTCTTCCEECTT
T ss_pred             -cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcC--CCCCCEEEcCCCCCcccCCHH
Confidence             55555555   666666655555554433  56666 66666643 4455544433  356666666666556666543


Q ss_pred             C--CC-CCCceEEEecCCCCCccccccCccCCcccccCccccceEEEecCC
Q 038658          717 Q--LP-PSLKNVVIRNCDNVRTLTVEEGIQSSSSRRYTSSLLEHLHIESCP  764 (831)
Q Consensus       717 ~--~~-~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~l~~~~L~~L~i~~c~  764 (831)
                      .  .. ++|++|++++ ++++.+  +..  .     ++.  |++|++.++.
T Consensus       199 ~~~~l~~~L~~L~l~~-N~l~~l--~~~--~-----~~~--L~~L~l~~~~  237 (239)
T 2xwt_C          199 AFGGVYSGPSLLDVSQ-TSVTAL--PSK--G-----LEH--LKELIARNTW  237 (239)
T ss_dssp             TTTTCSBCCSEEECTT-CCCCCC--CCT--T-----CTT--CSEEECTTC-
T ss_pred             HhhccccCCcEEECCC-CccccC--Chh--H-----hcc--CceeeccCcc
Confidence            2  23 5666666665 455555  322  1     333  6666666553

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.60  E-value=1.6e-15  Score=156.76  Aligned_cols=199  Identities=19%  Similarity=0.132  Sum_probs=137.1

Q ss_pred             CCcceEEEEeCCCCccc-cCccc--cCCCCCceeecCCCCCCcc-c----hhhhccCCccEEeecCcCccccccccccCc
Q 038658          190 KLQRLRVFSLCGYWISE-LPDSI--GDLRYLRYLNLSGTQIRTL-P----ESVNKLYNLHTLSLEGCRGLRKLCAGMGNL  261 (831)
Q Consensus       190 ~l~~L~~L~L~~~~i~~-lp~~~--~~l~~Lr~L~L~~~~i~~l-p----~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L  261 (831)
                      .+++|++|++++|.+.. .|..+  +.+++|++|++++|.+... |    ..+..+++|++|++++|......|..++.+
T Consensus        89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l  168 (310)
T 4glp_A           89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF  168 (310)
T ss_dssp             HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred             ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence            45679999999999874 47777  8899999999999998842 2    345679999999999988655566779999


Q ss_pred             ccccccccCCCCCccc--cc--CCCCCccccccccceEecCCCCCcchhhhccccccCeeeEccccc---ccccCCCCcc
Q 038658          262 IKLHHLNNSNTDSLEE--MP--LGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLEN---AQLDGKKNLK  334 (831)
Q Consensus       262 ~~L~~L~l~~~~~~~~--~p--~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~---~~l~~~~~L~  334 (831)
                      ++|++|++++|...+.  ++  ..++.+++|++|....                     +.+..+..   ..+..+++|+
T Consensus       169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~---------------------N~l~~l~~~~~~l~~~l~~L~  227 (310)
T 4glp_A          169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRN---------------------TGMETPTGVCAALAAAGVQPH  227 (310)
T ss_dssp             TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCS---------------------SCCCCHHHHHHHHHHHTCCCS
T ss_pred             CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCC---------------------CCCCchHHHHHHHHhcCCCCC
Confidence            9999999999985432  33  2247788888883211                     11111111   1234556777


Q ss_pred             eEEEEeecCCCCCChhhhhhHHhhhcCCCC---CCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCCCCC
Q 038658          335 VLMLRWTNSTDGSSLREAETQKGVLDMLKP---HKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVG  411 (831)
Q Consensus       335 ~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~~l~  411 (831)
                      +|++++|.....           .+..+..   +++|+.|++++|.+..+|.++    +++|+.|++++|.+.+. |.+.
T Consensus       228 ~L~Ls~N~l~~~-----------~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~----~~~L~~L~Ls~N~l~~~-~~~~  291 (310)
T 4glp_A          228 SLDLSHNSLRAT-----------VNPSAPRCMWSSALNSLNLSFAGLEQVPKGL----PAKLRVLDLSSNRLNRA-PQPD  291 (310)
T ss_dssp             SEECTTSCCCCC-----------CCSCCSSCCCCTTCCCEECCSSCCCSCCSCC----CSCCSCEECCSCCCCSC-CCTT
T ss_pred             EEECCCCCCCcc-----------chhhHHhccCcCcCCEEECCCCCCCchhhhh----cCCCCEEECCCCcCCCC-chhh
Confidence            888877765432           1222222   367888888888877777665    36788888888877643 4456


Q ss_pred             CCCCcceEEecccc
Q 038658          412 QLPSLKHLAVRRMS  425 (831)
Q Consensus       412 ~l~~L~~L~L~~~~  425 (831)
                      .+++|+.|++++++
T Consensus       292 ~l~~L~~L~L~~N~  305 (310)
T 4glp_A          292 ELPEVDNLTLDGNP  305 (310)
T ss_dssp             SCCCCSCEECSSTT
T ss_pred             hCCCccEEECcCCC
Confidence            77777888777653

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.57  E-value=4.6e-17  Score=170.99  Aligned_cols=205  Identities=21%  Similarity=0.218  Sum_probs=131.9

Q ss_pred             ccCC--cceEEEEeCCCCccccCccccCCCCCceeecCCCCCCc--cchhhhccCCccEEeecCcCccccccccccCccc
Q 038658          188 LFKL--QRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRT--LPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIK  263 (831)
Q Consensus       188 ~~~l--~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~--lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~  263 (831)
                      +..+  +.+++|++++|.+...+..+..+++|++|++++|.+..  +|..+..+++|++|++++|......|..++.+++
T Consensus        64 ~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~  143 (336)
T 2ast_B           64 TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSN  143 (336)
T ss_dssp             HHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTT
T ss_pred             HHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCC
Confidence            3355  78999999999988776667789999999999998873  7888899999999999998755567788888999


Q ss_pred             ccccccCCCCCcc--cccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEee
Q 038658          264 LHHLNNSNTDSLE--EMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWT  341 (831)
Q Consensus       264 L~~L~l~~~~~~~--~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~  341 (831)
                      |++|++++|..++  .+|..++++++|                                             ++|++++|
T Consensus       144 L~~L~L~~~~~l~~~~l~~~~~~~~~L---------------------------------------------~~L~l~~~  178 (336)
T 2ast_B          144 LVRLNLSGCSGFSEFALQTLLSSCSRL---------------------------------------------DELNLSWC  178 (336)
T ss_dssp             CSEEECTTCBSCCHHHHHHHHHHCTTC---------------------------------------------CEEECCCC
T ss_pred             CCEEECCCCCCCCHHHHHHHHhcCCCC---------------------------------------------CEEcCCCC
Confidence            9999999884233  234334444444                                             44444444


Q ss_pred             -cCCCCCChhhhhhHHhhhcCCCCCC-CccEEEEeeec--C--CCCCccCCCCCCCceeEEEEecCC-CCCC-CCCCCCC
Q 038658          342 -NSTDGSSLREAETQKGVLDMLKPHK-NLEQFFISGYG--G--TKFPIWLGDSSFSNLVTLKFEDCG-MCTT-LPSVGQL  413 (831)
Q Consensus       342 -~~~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~--~--~~~p~~~~~~~~~~L~~L~l~~~~-~~~~-~~~l~~l  413 (831)
                       ....          ......+..++ +|+.|++++|.  .  ..+|..+..  +++|+.|++++|. +... ++.+..+
T Consensus       179 ~~l~~----------~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~--~~~L~~L~l~~~~~l~~~~~~~l~~l  246 (336)
T 2ast_B          179 FDFTE----------KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR--CPNLVHLDLSDSVMLKNDCFQEFFQL  246 (336)
T ss_dssp             TTCCH----------HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH--CTTCSEEECTTCTTCCGGGGGGGGGC
T ss_pred             CCcCh----------HHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh--CCCCCEEeCCCCCcCCHHHHHHHhCC
Confidence             2210          00112233445 67777777663  2  223443332  6778888888877 3322 3366777


Q ss_pred             CCcceEEeccccCceeeCccccCCCCCCCCCCcceeecccc
Q 038658          414 PSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENL  454 (831)
Q Consensus       414 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  454 (831)
                      ++|++|++++|..+...+...+     ..+++|+.|++.++
T Consensus       247 ~~L~~L~l~~~~~~~~~~~~~l-----~~~~~L~~L~l~~~  282 (336)
T 2ast_B          247 NYLQHLSLSRCYDIIPETLLEL-----GEIPTLKTLQVFGI  282 (336)
T ss_dssp             TTCCEEECTTCTTCCGGGGGGG-----GGCTTCCEEECTTS
T ss_pred             CCCCEeeCCCCCCCCHHHHHHH-----hcCCCCCEEeccCc
Confidence            8888888887753322211111     22666666666654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.56  E-value=2.4e-14  Score=142.85  Aligned_cols=172  Identities=18%  Similarity=0.177  Sum_probs=90.6

Q ss_pred             ceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccc-hhhhccCCccEEeecCcCccccccccccCcccccccccCC
Q 038658          193 RLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLP-ESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSN  271 (831)
Q Consensus       193 ~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~  271 (831)
                      ..++++++++.++.+|..+.  .+|++|++++|.+..++ ..+.++++|++|++++|......|..+..+++|++|++++
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence            34556666666666665554  45666666666666553 3456666666666666543333344456666666666666


Q ss_pred             CCCccccc-CCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCChh
Q 038658          272 TDSLEEMP-LGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLR  350 (831)
Q Consensus       272 ~~~~~~~p-~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~  350 (831)
                      |. +..+| ..++.+++|++|                                             ++++|.....    
T Consensus        93 n~-l~~~~~~~~~~l~~L~~L---------------------------------------------~L~~N~l~~~----  122 (251)
T 3m19_A           93 NQ-LASLPLGVFDHLTQLDKL---------------------------------------------YLGGNQLKSL----  122 (251)
T ss_dssp             SC-CCCCCTTTTTTCTTCCEE---------------------------------------------ECCSSCCCCC----
T ss_pred             Cc-ccccChhHhcccCCCCEE---------------------------------------------EcCCCcCCCc----
Confidence            65 33333 224444444444                                             1211111100    


Q ss_pred             hhhhHHhhhcCCCCCCCccEEEEeeecCCCCCc-cCCCCCCCceeEEEEecCCCCCCCC-CCCCCCCcceEEecccc
Q 038658          351 EAETQKGVLDMLKPHKNLEQFFISGYGGTKFPI-WLGDSSFSNLVTLKFEDCGMCTTLP-SVGQLPSLKHLAVRRMS  425 (831)
Q Consensus       351 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~  425 (831)
                             ....+..+++|+.|++++|.+..+|. .+..  +++|+.|++++|.+....+ .+..+++|+.|++++++
T Consensus       123 -------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          123 -------PSGVFDRLTKLKELRLNTNQLQSIPAGAFDK--LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             -------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             -------ChhHhccCCcccEEECcCCcCCccCHHHcCc--CcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence                   01113334555555555655555554 2332  5667777777766665444 46666777777776653

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.51  E-value=1.4e-15  Score=169.50  Aligned_cols=100  Identities=15%  Similarity=0.256  Sum_probs=83.5

Q ss_pred             CCCchHHHHhccccCChhhhhHhh-----------hhCCCCCCCccCHHHHHHHHHHc--CCcCCCCCCCchHHHHHHHH
Q 038658           17 RCDIIPALRVSYYYLSAPLKQCFA-----------YCSLFPKDYEFEEEEIILLWSAV--GFLDHRKSENPCEDLGRKFF   83 (831)
Q Consensus        17 ~~~i~~~L~lSY~~L~~~~k~cfl-----------~~~~fp~~~~i~~~~Li~~wi~~--G~i~~~~~~~~~~~~~~~~~   83 (831)
                      .++|.++|++||++||.++|.||+           |||+||+|+.|+    ++.|+|+  ||+...+....++++++ +|
T Consensus       360 ~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l  434 (549)
T 2a5y_B          360 LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RL  434 (549)
T ss_dssp             SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HH
T ss_pred             HHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HH
Confidence            357999999999999999999999           999999999999    8999999  99987654667888888 99


Q ss_pred             HHHHhcccceeecC-CcccEeecHHHHHHHHHHhcCcEE
Q 038658           84 QELRARSFFQQSSN-NKSLFVMHDLINDLAHWAAGEIYF  121 (831)
Q Consensus        84 ~~Lv~~~ll~~~~~-~~~~~~mHdlv~d~a~~i~~~~~~  121 (831)
                      ++|+++||++..+. ....|+|||+|||+|++++++++.
T Consensus       435 ~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~  473 (549)
T 2a5y_B          435 KRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI  473 (549)
T ss_dssp             HHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred             HHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence            99999999998653 356799999999999999987653

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.50  E-value=1.2e-13  Score=137.60  Aligned_cols=175  Identities=16%  Similarity=0.165  Sum_probs=132.0

Q ss_pred             CCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcccccccccCCCCCcccccCCCCCccccccccce
Q 038658          215 RYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNF  294 (831)
Q Consensus       215 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~  294 (831)
                      ...++++++++.++.+|..+.  .+|+.|++++|......|..++++++|++|++++|.+.+..|..++.+++|++|   
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L---   88 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTL---   88 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE---
T ss_pred             CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEE---
Confidence            467899999999999998776  699999999987655566679999999999999998444444446777766666   


Q ss_pred             EecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEe
Q 038658          295 VVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFIS  374 (831)
Q Consensus       295 ~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~  374 (831)
                                                                +++.|.....           ....+..+++|+.|+++
T Consensus        89 ------------------------------------------~L~~n~l~~~-----------~~~~~~~l~~L~~L~L~  115 (251)
T 3m19_A           89 ------------------------------------------GLANNQLASL-----------PLGVFDHLTQLDKLYLG  115 (251)
T ss_dssp             ------------------------------------------ECTTSCCCCC-----------CTTTTTTCTTCCEEECC
T ss_pred             ------------------------------------------ECCCCccccc-----------ChhHhcccCCCCEEEcC
Confidence                                                      2222222111           22345677899999999


Q ss_pred             eecCCCCCccCCCCCCCceeEEEEecCCCCCCCC-CCCCCCCcceEEeccccCceeeCccccCCCCCCCCCCcceeeccc
Q 038658          375 GYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLP-SVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFEN  453 (831)
Q Consensus       375 ~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~  453 (831)
                      +|.+..+|..... .+++|+.|++++|.+....+ .++.+++|+.|+++++. +..++...+     ..+++|+.|++.+
T Consensus       116 ~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~-----~~l~~L~~L~l~~  188 (251)
T 3m19_A          116 GNQLKSLPSGVFD-RLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAF-----DRLGKLQTITLFG  188 (251)
T ss_dssp             SSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTT-----TTCTTCCEEECCS
T ss_pred             CCcCCCcChhHhc-cCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc-CCccCHHHH-----hCCCCCCEEEeeC
Confidence            9999988875432 38999999999999887666 68999999999999864 444443222     3388999999987


Q ss_pred             c
Q 038658          454 L  454 (831)
Q Consensus       454 ~  454 (831)
                      .
T Consensus       189 N  189 (251)
T 3m19_A          189 N  189 (251)
T ss_dssp             C
T ss_pred             C
Confidence            4

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.50  E-value=3.1e-14  Score=135.99  Aligned_cols=100  Identities=16%  Similarity=0.242  Sum_probs=76.7

Q ss_pred             CCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCccccccccc
Q 038658          190 KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNN  269 (831)
Q Consensus       190 ~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l  269 (831)
                      .+++|++|++++|.++.+| .+..+++|++|++++|.++.++ .+..+++|++|++++|......|..++.+++|++|++
T Consensus        42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            6778889999999888887 6888899999999998777664 7888899999999988765557778888888999998


Q ss_pred             CCCCCcccccCCCCCccccccc
Q 038658          270 SNTDSLEEMPLGIGKLTCLQTL  291 (831)
Q Consensus       270 ~~~~~~~~~p~~~~~L~~L~~L  291 (831)
                      ++|.+....|..++.+++|++|
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L  141 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSI  141 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEE
T ss_pred             cCCccCcHhHHHHhhCCCCCEE
Confidence            8887444444444444444443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.50  E-value=2.1e-13  Score=140.77  Aligned_cols=201  Identities=16%  Similarity=0.139  Sum_probs=126.4

Q ss_pred             CCcccEEeEcCCcCcccCCCC-----CCCcccEEEEccccCcc-------ccCCCCCccceEEEcCCCCccccccccccC
Q 038658          472 FPKLRELEVIGCSKLKGTFPE-----HLPALEMLVIGGCEELL-------VSITSLPALSKLEIGGCKKVVWRSETDHLG  539 (831)
Q Consensus       472 ~~~L~~L~l~~c~~l~~~~p~-----~l~~L~~L~l~~~~~l~-------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  539 (831)
                      +++|++|++++| .+.+..|.     .+++|+.|++++|....       ..+..+++|++|++++|.....        
T Consensus        90 ~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~--------  160 (310)
T 4glp_A           90 YSRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAF--------  160 (310)
T ss_dssp             HSCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCC--------
T ss_pred             cCceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchh--------
Confidence            345777777774 45444443     35667777777666321       2334577888888888774321        


Q ss_pred             CCCceeeccccchhhccCCCCCCCCCCcEEEEccCCCcchhcccCCcccccCCCccEEeeecCCCcccchhhhhhhHhhh
Q 038658          540 SQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQL  619 (831)
Q Consensus       540 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l  619 (831)
                                      .......+++|++|+++++................+++|++|++++| +++.++........  
T Consensus       161 ----------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~--  221 (310)
T 4glp_A          161 ----------------SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAA--  221 (310)
T ss_dssp             ----------------CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHH--
T ss_pred             ----------------hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHh--
Confidence                            11234467888888888887433211122333467888999999885 66655432111111  


Q ss_pred             hcccCCccEEEeccCCCCcccccccCCC---CCCCeEEEecCCCCccccCCCCCCCccEEEEecCCCCcccccccccCCC
Q 038658          620 CELSCRLEYLLLNDCKGLVKLPQSLLSL---SSLREIEIYNCSSFVSFPEVALPSKVRSISIHRCDALKSLPEAWMCDAN  696 (831)
Q Consensus       620 ~~~~~~L~~L~l~~~~~~~~l~~~l~~l---~~L~~L~L~~~~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l  696 (831)
                        -.++|++|++++|......|..+..+   ++|++|++++| .++.+|... +++|++|++++|. ++.+|. +..  +
T Consensus       222 --~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~-~~~L~~L~Ls~N~-l~~~~~-~~~--l  293 (310)
T 4glp_A          222 --AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGL-PAKLRVLDLSSNR-LNRAPQ-PDE--L  293 (310)
T ss_dssp             --HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCC-CSCCSCEECCSCC-CCSCCC-TTS--C
T ss_pred             --cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchhhhh-cCCCCEEECCCCc-CCCCch-hhh--C
Confidence              12578999999988766667666665   68999999888 566777543 4788888888854 555543 333  7


Q ss_pred             CCcCeEEEccCC
Q 038658          697 LSLEILTISRCH  708 (831)
Q Consensus       697 ~~L~~L~l~~c~  708 (831)
                      ++|+.|++++++
T Consensus       294 ~~L~~L~L~~N~  305 (310)
T 4glp_A          294 PEVDNLTLDGNP  305 (310)
T ss_dssp             CCCSCEECSSTT
T ss_pred             CCccEEECcCCC
Confidence            778888887764

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.49  E-value=5.6e-14  Score=143.15  Aligned_cols=168  Identities=20%  Similarity=0.270  Sum_probs=105.2

Q ss_pred             CCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCccccccccc
Q 038658          190 KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNN  269 (831)
Q Consensus       190 ~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l  269 (831)
                      .+++|++|++++|.+..++ .+..+++|++|++++|.++.++. +.++++|++|++++|. +..+|. ++.+++|++|++
T Consensus        44 ~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~L  119 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLKKLKSLSL  119 (291)
T ss_dssp             HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCTTCCEEEC
T ss_pred             hcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChh-hccCCCCCEEEC
Confidence            5667777788777777775 36777788888888887777766 7777888888887765 444543 777777888888


Q ss_pred             CCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCCh
Q 038658          270 SNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSL  349 (831)
Q Consensus       270 ~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~  349 (831)
                      ++|. +..++ .++.+++|+.|                                             ++++|....    
T Consensus       120 ~~n~-i~~~~-~l~~l~~L~~L---------------------------------------------~l~~n~l~~----  148 (291)
T 1h6t_A          120 EHNG-ISDIN-GLVHLPQLESL---------------------------------------------YLGNNKITD----  148 (291)
T ss_dssp             TTSC-CCCCG-GGGGCTTCCEE---------------------------------------------ECCSSCCCC----
T ss_pred             CCCc-CCCCh-hhcCCCCCCEE---------------------------------------------EccCCcCCc----
Confidence            7776 33332 34444444444                                             332222211    


Q ss_pred             hhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCCCCCCCCCcceEEecccc
Q 038658          350 REAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHLAVRRMS  425 (831)
Q Consensus       350 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~  425 (831)
                               ...+..+++|+.|++++|.+..++. +.  .+++|+.|++++|.+.. ++.+..+++|+.|++++++
T Consensus       149 ---------~~~l~~l~~L~~L~L~~N~l~~~~~-l~--~l~~L~~L~L~~N~i~~-l~~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          149 ---------ITVLSRLTKLDTLSLEDNQISDIVP-LA--GLTKLQNLYLSKNHISD-LRALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             ---------CGGGGGCTTCSEEECCSSCCCCCGG-GT--TCTTCCEEECCSSCCCB-CGGGTTCTTCSEEEEEEEE
T ss_pred             ---------chhhccCCCCCEEEccCCccccchh-hc--CCCccCEEECCCCcCCC-ChhhccCCCCCEEECcCCc
Confidence                     0123344566666666666665554 33  26777777777776543 4556677777777777653

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.49  E-value=1.9e-15  Score=161.61  Aligned_cols=112  Identities=12%  Similarity=0.123  Sum_probs=65.3

Q ss_pred             ccccCCcceEEccccccCCCcccccccc----cccccCCcceEEEEeCCCCccc----cCccc-------cCCCCCceee
Q 038658          157 DLYNIQHLRTFLPVCLSNSSQGFLAHSI----LPKLFKLQRLRVFSLCGYWISE----LPDSI-------GDLRYLRYLN  221 (831)
Q Consensus       157 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~----~~~~~~l~~L~~L~L~~~~i~~----lp~~~-------~~l~~Lr~L~  221 (831)
                      .+..+++|+.|.+.+      +.+....    +..+..+++|++|+|++|.+..    +|..+       ..+++|++|+
T Consensus        27 ~l~~~~~L~~L~L~~------n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~  100 (386)
T 2ca6_A           27 VLLEDDSVKEIVLSG------NTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR  100 (386)
T ss_dssp             HHHHCSCCCEEECTT------SEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred             HHhcCCCccEEECCC------CCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence            345566677764433      2333322    2224467777777777764432    23333       5677777777


Q ss_pred             cCCCCCCc-----cchhhhccCCccEEeecCcCcccc----ccccccCc---------ccccccccCCCCC
Q 038658          222 LSGTQIRT-----LPESVNKLYNLHTLSLEGCRGLRK----LCAGMGNL---------IKLHHLNNSNTDS  274 (831)
Q Consensus       222 L~~~~i~~-----lp~~i~~L~~L~~L~l~~~~~~~~----lp~~i~~L---------~~L~~L~l~~~~~  274 (831)
                      |++|.+..     +|..+..+++|++|++++|.....    ++..+..+         ++|++|++++|.+
T Consensus       101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l  171 (386)
T 2ca6_A          101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL  171 (386)
T ss_dssp             CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred             CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCC
Confidence            77777764     566777777777777777654322    22233333         6777777777763

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.46  E-value=2.7e-15  Score=160.55  Aligned_cols=92  Identities=23%  Similarity=0.236  Sum_probs=74.2

Q ss_pred             cccccccCCcceEEEEeCCCCccc-----cCccccCCCCCceeecCCCCCC----ccchhh-------hccCCccEEeec
Q 038658          183 SILPKLFKLQRLRVFSLCGYWISE-----LPDSIGDLRYLRYLNLSGTQIR----TLPESV-------NKLYNLHTLSLE  246 (831)
Q Consensus       183 ~~~~~~~~l~~L~~L~L~~~~i~~-----lp~~~~~l~~Lr~L~L~~~~i~----~lp~~i-------~~L~~L~~L~l~  246 (831)
                      .++..+..+++|++|+|++|.++.     ++..+..+++|++|+|++|.+.    .+|..+       ..+++|++|+++
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            345556688899999999999874     3455788999999999998655    345544       788999999999


Q ss_pred             CcCccc----cccccccCcccccccccCCCCC
Q 038658          247 GCRGLR----KLCAGMGNLIKLHHLNNSNTDS  274 (831)
Q Consensus       247 ~~~~~~----~lp~~i~~L~~L~~L~l~~~~~  274 (831)
                      +|....    .+|..+..+++|++|++++|.+
T Consensus       103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l  134 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL  134 (386)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred             CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence            987554    4788899999999999999984

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.44  E-value=1.2e-14  Score=153.61  Aligned_cols=96  Identities=14%  Similarity=0.095  Sum_probs=67.6

Q ss_pred             ccccccccccccCCcceEEEEeCCCCccccC-----ccccCCC-CCceeecCCCCCCcc-chhhhcc-----CCccEEee
Q 038658          178 GFLAHSILPKLFKLQRLRVFSLCGYWISELP-----DSIGDLR-YLRYLNLSGTQIRTL-PESVNKL-----YNLHTLSL  245 (831)
Q Consensus       178 ~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp-----~~~~~l~-~Lr~L~L~~~~i~~l-p~~i~~L-----~~L~~L~l  245 (831)
                      +.+.+.+|..+...++|++|+|++|.++..+     ..+..++ +|++|+|++|.++.. +..+..+     ++|++|++
T Consensus         8 n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L   87 (362)
T 3goz_A            8 HPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNL   87 (362)
T ss_dssp             CTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred             ccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEEC
Confidence            3444444444445566888899888888764     5667777 888888888888755 5566665     88888888


Q ss_pred             cCcCcccccccccc----Cc-ccccccccCCCC
Q 038658          246 EGCRGLRKLCAGMG----NL-IKLHHLNNSNTD  273 (831)
Q Consensus       246 ~~~~~~~~lp~~i~----~L-~~L~~L~l~~~~  273 (831)
                      ++|......+..+.    .+ ++|++|++++|.
T Consensus        88 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  120 (362)
T 3goz_A           88 SGNFLSYKSSDELVKTLAAIPFTITVLDLGWND  120 (362)
T ss_dssp             CSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred             cCCcCChHHHHHHHHHHHhCCCCccEEECcCCc
Confidence            88874444444443    33 788888888887

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.44  E-value=3.8e-13  Score=136.93  Aligned_cols=121  Identities=21%  Similarity=0.353  Sum_probs=89.0

Q ss_pred             ccccCCcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhc
Q 038658          157 DLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNK  236 (831)
Q Consensus       157 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~  236 (831)
                      ...++++|+.|.+.+..      +. .+ +.+..+++|++|++++|.++.++. +..+++|++|++++|.++.+|. +..
T Consensus        41 ~~~~l~~L~~L~l~~~~------i~-~~-~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~  110 (291)
T 1h6t_A           41 TQNELNSIDQIIANNSD------IK-SV-QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKD  110 (291)
T ss_dssp             CHHHHHTCCEEECTTSC------CC-CC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTT
T ss_pred             chhhcCcccEEEccCCC------cc-cC-hhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hcc
Confidence            34456777777554322      21 22 345688899999999999988866 8899999999999999888764 889


Q ss_pred             cCCccEEeecCcCccccccccccCcccccccccCCCCCcccccCCCCCccccccc
Q 038658          237 LYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTL  291 (831)
Q Consensus       237 L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L  291 (831)
                      +++|++|++++|. +..+ ..+..+++|++|++++|. +..+ ..++.+++|+.|
T Consensus       111 l~~L~~L~L~~n~-i~~~-~~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L  161 (291)
T 1h6t_A          111 LKKLKSLSLEHNG-ISDI-NGLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTL  161 (291)
T ss_dssp             CTTCCEEECTTSC-CCCC-GGGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEE
T ss_pred             CCCCCEEECCCCc-CCCC-hhhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEE
Confidence            9999999999876 5555 458889999999999887 4444 345555555555

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.43  E-value=4.5e-13  Score=147.96  Aligned_cols=176  Identities=18%  Similarity=0.186  Sum_probs=98.2

Q ss_pred             ceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcccccccccCCC
Q 038658          193 RLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNT  272 (831)
Q Consensus       193 ~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~  272 (831)
                      +|++|++++|.++.+|..+.  ++|++|+|++|.|+.+|   ..+++|++|++++|. +..+|. +.+  +|++|++++|
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~Ls~N  130 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLDVDNN  130 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEECCSS
T ss_pred             CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCEEECCCC
Confidence            56666666666666655442  55666666666666665   345666666666654 333555 444  6666666666


Q ss_pred             CCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCChhhh
Q 038658          273 DSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREA  352 (831)
Q Consensus       273 ~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  352 (831)
                      . ++.+|.   .+++|+.|...                     .+.+..+..    .+++|+.|++++|.....      
T Consensus       131 ~-l~~lp~---~l~~L~~L~Ls---------------------~N~l~~lp~----~l~~L~~L~Ls~N~L~~l------  175 (571)
T 3cvr_A          131 Q-LTMLPE---LPALLEYINAD---------------------NNQLTMLPE----LPTSLEVLSVRNNQLTFL------  175 (571)
T ss_dssp             C-CSCCCC---CCTTCCEEECC---------------------SSCCSCCCC----CCTTCCEEECCSSCCSCC------
T ss_pred             c-CCCCCC---cCccccEEeCC---------------------CCccCcCCC----cCCCcCEEECCCCCCCCc------
Confidence            5 333554   34444444110                     111111111    234566666666554321      


Q ss_pred             hhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCce-------eEEEEecCCCCCCCCCCCCCCCcceEEecccc
Q 038658          353 ETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNL-------VTLKFEDCGMCTTLPSVGQLPSLKHLAVRRMS  425 (831)
Q Consensus       353 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L-------~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~  425 (831)
                            +. +.  ++|+.|++++|.+..+|. +.    .+|       +.|++++|.+....+.+..+++|+.|++++|+
T Consensus       176 ------p~-l~--~~L~~L~Ls~N~L~~lp~-~~----~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~  241 (571)
T 3cvr_A          176 ------PE-LP--ESLEALDVSTNLLESLPA-VP----VRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP  241 (571)
T ss_dssp             ------CC-CC--TTCCEEECCSSCCSSCCC-CC------------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred             ------ch-hh--CCCCEEECcCCCCCchhh-HH----HhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCc
Confidence                  11 22  678888888888777776 43    255       88888888776433356668888888887765


Q ss_pred             C
Q 038658          426 R  426 (831)
Q Consensus       426 ~  426 (831)
                      .
T Consensus       242 l  242 (571)
T 3cvr_A          242 L  242 (571)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.43  E-value=1.9e-13  Score=152.86  Aligned_cols=96  Identities=22%  Similarity=0.325  Sum_probs=54.9

Q ss_pred             CCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCccccccccc
Q 038658          190 KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNN  269 (831)
Q Consensus       190 ~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l  269 (831)
                      .+++|+.|++++|.+..+| .+..+++|++|+|++|.+..+|. +..+++|+.|+|++|. +..+| .+..+++|++|++
T Consensus        41 ~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~L  116 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLSL  116 (605)
T ss_dssp             HHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEEC
T ss_pred             cCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEEe
Confidence            4555666666666666654 45666666666666666666654 6666666666666654 33343 4666666666666


Q ss_pred             CCCCCcccccCCCCCccccccc
Q 038658          270 SNTDSLEEMPLGIGKLTCLQTL  291 (831)
Q Consensus       270 ~~~~~~~~~p~~~~~L~~L~~L  291 (831)
                      ++|. +..+| .++.+++|+.|
T Consensus       117 s~N~-l~~l~-~l~~l~~L~~L  136 (605)
T 1m9s_A          117 EHNG-ISDIN-GLVHLPQLESL  136 (605)
T ss_dssp             TTSC-CCCCG-GGGGCTTCSEE
T ss_pred             cCCC-CCCCc-cccCCCccCEE
Confidence            6665 33332 24444444444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.42  E-value=1.2e-12  Score=127.09  Aligned_cols=83  Identities=16%  Similarity=0.256  Sum_probs=57.5

Q ss_pred             EEEEeCCCCccccCccccCCCCCceeecCCCCCCccch-hhhccCCccEEeecCcCccccccccccCcccccccccCCCC
Q 038658          195 RVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPE-SVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTD  273 (831)
Q Consensus       195 ~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~  273 (831)
                      +.++++++.++.+|..+.  .+|++|++++|.|+.+|. .+..+++|++|++++|......|..|..+++|++|++++|.
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            456777777777776654  577777777777777654 66777777777777766444446667777777777777776


Q ss_pred             CcccccC
Q 038658          274 SLEEMPL  280 (831)
Q Consensus       274 ~~~~~p~  280 (831)
                       +..+|.
T Consensus        92 -l~~l~~   97 (220)
T 2v9t_B           92 -ITELPK   97 (220)
T ss_dssp             -CCCCCT
T ss_pred             -CCccCH
Confidence             444543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.41  E-value=2.8e-13  Score=130.80  Aligned_cols=98  Identities=30%  Similarity=0.442  Sum_probs=63.1

Q ss_pred             cceEEEEeCCCCccccCc-cccCCCCCceeecCCCCCCccchh-hhccCCccEEeecCcCccccccc-cccCcccccccc
Q 038658          192 QRLRVFSLCGYWISELPD-SIGDLRYLRYLNLSGTQIRTLPES-VNKLYNLHTLSLEGCRGLRKLCA-GMGNLIKLHHLN  268 (831)
Q Consensus       192 ~~L~~L~L~~~~i~~lp~-~~~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~  268 (831)
                      ++|++|++++|.++.+|. .|..+++|++|++++|+++.+|.. +..+++|++|++++|. +..+|. .++.+++|++|+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCCEEE
Confidence            467777777777776643 456777777777777777776643 4677777777777765 334443 357777777777


Q ss_pred             cCCCCCcccccCC-CCCccccccc
Q 038658          269 NSNTDSLEEMPLG-IGKLTCLQTL  291 (831)
Q Consensus       269 l~~~~~~~~~p~~-~~~L~~L~~L  291 (831)
                      +++|. +..+|.. ++.+++|++|
T Consensus       107 L~~N~-l~~~~~~~~~~l~~L~~L  129 (208)
T 2o6s_A          107 LNTNQ-LQSLPDGVFDKLTQLKDL  129 (208)
T ss_dssp             CCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred             cCCCc-CcccCHhHhccCCcCCEE
Confidence            77776 3444432 4444444444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.41  E-value=1.4e-14  Score=151.93  Aligned_cols=200  Identities=22%  Similarity=0.271  Sum_probs=139.9

Q ss_pred             CcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCccc--cCccccCCCCCceeecCCCCCC-ccchhhhccC
Q 038658          162 QHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISE--LPDSIGDLRYLRYLNLSGTQIR-TLPESVNKLY  238 (831)
Q Consensus       162 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~--lp~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~L~  238 (831)
                      ++++.+.+.+      +.+.. .++.++.+++|++|++++|.+..  +|..+..+++|++|++++|.++ ..|..++.++
T Consensus        70 ~~l~~L~l~~------n~l~~-~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~  142 (336)
T 2ast_B           70 QGVIAFRCPR------SFMDQ-PLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS  142 (336)
T ss_dssp             TTCSEEECTT------CEECS-CCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCT
T ss_pred             ccceEEEcCC------ccccc-cchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCC
Confidence            7788875533      33333 34456789999999999999874  7888899999999999999988 6788999999


Q ss_pred             CccEEeecCcCccc--cccccccCcccccccccCCC-CCccc-ccCCCCCcc-ccccccceEecCCCCCcchhhhccccc
Q 038658          239 NLHTLSLEGCRGLR--KLCAGMGNLIKLHHLNNSNT-DSLEE-MPLGIGKLT-CLQTLCNFVVGKDSGSRLRELKLLTHL  313 (831)
Q Consensus       239 ~L~~L~l~~~~~~~--~lp~~i~~L~~L~~L~l~~~-~~~~~-~p~~~~~L~-~L~~L~~~~~~~~~~~~~~~l~~L~~L  313 (831)
                      +|++|++++|..+.  .+|..+.++++|++|++++| ..... ++..++.++ +|++                       
T Consensus       143 ~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~-----------------------  199 (336)
T 2ast_B          143 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ-----------------------  199 (336)
T ss_dssp             TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCE-----------------------
T ss_pred             CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCE-----------------------
Confidence            99999999995455  37777899999999999999 52221 343344444 4444                       


Q ss_pred             cCeeeEcccccccccCCCCcceEEEEeecC-CCCCChhhhhhHHhhhcCCCCCCCccEEEEeeec-CC-CCCccCCCCCC
Q 038658          314 RGTLTISKLENAQLDGKKNLKVLMLRWTNS-TDGSSLREAETQKGVLDMLKPHKNLEQFFISGYG-GT-KFPIWLGDSSF  390 (831)
Q Consensus       314 ~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~-~~p~~~~~~~~  390 (831)
                                            |++++|.. ..         .......+..+++|+.|++++|. .+ ..+..+..  +
T Consensus       200 ----------------------L~l~~~~~~~~---------~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~--l  246 (336)
T 2ast_B          200 ----------------------LNLSGYRKNLQ---------KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ--L  246 (336)
T ss_dssp             ----------------------EECCSCGGGSC---------HHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG--C
T ss_pred             ----------------------EEeCCCcccCC---------HHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhC--C
Confidence                                  44433320 00         01122233456788888888877 33 34445543  7


Q ss_pred             CceeEEEEecCCCCCC--CCCCCCCCCcceEEeccc
Q 038658          391 SNLVTLKFEDCGMCTT--LPSVGQLPSLKHLAVRRM  424 (831)
Q Consensus       391 ~~L~~L~l~~~~~~~~--~~~l~~l~~L~~L~L~~~  424 (831)
                      ++|+.|++++|.....  +..++.+++|+.|++++|
T Consensus       247 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          247 NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             TTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            8899999998862211  124677899999999887

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.41  E-value=1.3e-13  Score=138.07  Aligned_cols=59  Identities=20%  Similarity=0.192  Sum_probs=37.9

Q ss_pred             CCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCCCCCCCCCcceEEecccc
Q 038658          363 KPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHLAVRRMS  425 (831)
Q Consensus       363 ~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~  425 (831)
                      ..+++|+.|++++|.+..++ .+..  +++|+.|++++|.+.+. +.+..+++|+.|+++++.
T Consensus       125 ~~l~~L~~L~Ls~N~i~~~~-~l~~--l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          125 IHLKNLEILSIRNNKLKSIV-MLGF--LSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             TTCTTCCEEECTTSCCCBCG-GGGG--CTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEE
T ss_pred             cCcccccEEECCCCcCCCCh-HHcc--CCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCc
Confidence            34455566666666655554 2322  67777777777776554 667777888888887753

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.40  E-value=1.8e-12  Score=126.78  Aligned_cols=76  Identities=24%  Similarity=0.266  Sum_probs=43.3

Q ss_pred             EEEEeCCCCccccCccccCCCCCceeecCCCCCCcc-chhhhccCCccEEeecCcCccccccc-cccCcccccccccCCC
Q 038658          195 RVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTL-PESVNKLYNLHTLSLEGCRGLRKLCA-GMGNLIKLHHLNNSNT  272 (831)
Q Consensus       195 ~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~l~~~  272 (831)
                      +.++.+++.++.+|..+.  .+|++|+|++|.|+.+ |..+..+++|++|++++|. +..+|. .+..+++|++|++++|
T Consensus        22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCC
Confidence            345555666666665443  5666666666666654 4455666666666666654 344443 2456666666666666


Q ss_pred             C
Q 038658          273 D  273 (831)
Q Consensus       273 ~  273 (831)
                      .
T Consensus        99 ~   99 (229)
T 3e6j_A           99 Q   99 (229)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.40  E-value=4.2e-13  Score=148.19  Aligned_cols=174  Identities=20%  Similarity=0.203  Sum_probs=116.7

Q ss_pred             ccccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCccc
Q 038658          184 ILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIK  263 (831)
Q Consensus       184 ~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~  263 (831)
                      +|..++  ++|++|+|++|.++.+|   ..+++|++|++++|.|+.+|. +.+  +|++|++++|. +..+|.   .+++
T Consensus        74 lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~-l~~lp~---~l~~  141 (571)
T 3cvr_A           74 LPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ-LTMLPE---LPAL  141 (571)
T ss_dssp             CCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC-CSCCCC---CCTT
T ss_pred             cCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc-CCCCCC---cCcc
Confidence            555443  67888888888888877   456888888888888888877 655  88888888875 445776   6778


Q ss_pred             ccccccCCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecC
Q 038658          264 LHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNS  343 (831)
Q Consensus       264 L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~  343 (831)
                      |++|++++|. +..+|.   .+++|+.|..                    . .+.+..+..  +.  ++|+.|+++.|..
T Consensus       142 L~~L~Ls~N~-l~~lp~---~l~~L~~L~L--------------------s-~N~L~~lp~--l~--~~L~~L~Ls~N~L  192 (571)
T 3cvr_A          142 LEYINADNNQ-LTMLPE---LPTSLEVLSV--------------------R-NNQLTFLPE--LP--ESLEALDVSTNLL  192 (571)
T ss_dssp             CCEEECCSSC-CSCCCC---CCTTCCEEEC--------------------C-SSCCSCCCC--CC--TTCCEEECCSSCC
T ss_pred             ccEEeCCCCc-cCcCCC---cCCCcCEEEC--------------------C-CCCCCCcch--hh--CCCCEEECcCCCC
Confidence            8888888887 555765   4566666621                    1 112222222  22  6788888877765


Q ss_pred             CCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCC
Q 038658          344 TDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLP  408 (831)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~  408 (831)
                      ...+.  . .     .......+.|+.|++++|.+..+|.++..  +++|+.|++++|.+.+..|
T Consensus       193 ~~lp~--~-~-----~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~--l~~L~~L~L~~N~l~~~~p  247 (571)
T 3cvr_A          193 ESLPA--V-P-----VRNHHSEETEIFFRCRENRITHIPENILS--LDPTCTIILEDNPLSSRIR  247 (571)
T ss_dssp             SSCCC--C-C-------------CCEEEECCSSCCCCCCGGGGG--SCTTEEEECCSSSCCHHHH
T ss_pred             Cchhh--H-H-----HhhhcccccceEEecCCCcceecCHHHhc--CCCCCEEEeeCCcCCCcCH
Confidence            42210  0 0     00011223349999999999999998876  8999999999999876655

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.38  E-value=3.8e-13  Score=128.38  Aligned_cols=86  Identities=16%  Similarity=0.218  Sum_probs=43.4

Q ss_pred             cccCCcceEEEEeCCCCccc-cCccccCCCCCceeecCCCCCCc-cchhhhccCCccEEeecCcCccccccccccCcccc
Q 038658          187 KLFKLQRLRVFSLCGYWISE-LPDSIGDLRYLRYLNLSGTQIRT-LPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKL  264 (831)
Q Consensus       187 ~~~~l~~L~~L~L~~~~i~~-lp~~~~~l~~Lr~L~L~~~~i~~-lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L  264 (831)
                      .+..+++|++|++++|.++. .|..++.+++|++|++++|.++. .|..++.+++|++|++++|..+..+| .+..+++|
T Consensus        83 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L  161 (197)
T 4ezg_A           83 PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPEL  161 (197)
T ss_dssp             GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSC
T ss_pred             hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCC
Confidence            33355555555555555543 34445555555555555555542 34445555555555555544344444 35555555


Q ss_pred             cccccCCCC
Q 038658          265 HHLNNSNTD  273 (831)
Q Consensus       265 ~~L~l~~~~  273 (831)
                      ++|++++|.
T Consensus       162 ~~L~l~~n~  170 (197)
T 4ezg_A          162 KSLNIQFDG  170 (197)
T ss_dssp             CEEECTTBC
T ss_pred             CEEECCCCC
Confidence            555555554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.38  E-value=3.2e-13  Score=151.06  Aligned_cols=189  Identities=17%  Similarity=0.194  Sum_probs=142.6

Q ss_pred             CcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcccccccccC
Q 038658          191 LQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNS  270 (831)
Q Consensus       191 l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~  270 (831)
                      +..+..+.+..+.+..++ .+..+.+|++|++++|.+..+| .+..+++|+.|+|++|. +..+|. +..+++|+.|+++
T Consensus        20 l~~l~~l~l~~~~i~~~~-~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls   95 (605)
T 1m9s_A           20 FAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLD   95 (605)
T ss_dssp             HHHHHHHHTTCSCTTSEE-CHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECC
T ss_pred             HHHHHHHhccCCCccccc-chhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECc
Confidence            444555566666666653 3578999999999999999987 69999999999999986 555655 9999999999999


Q ss_pred             CCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCChh
Q 038658          271 NTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLR  350 (831)
Q Consensus       271 ~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~  350 (831)
                      +|. +..+| .++.+++|+.|....                     +.+..+  ..+..+++|+.|+++.|.....    
T Consensus        96 ~N~-l~~l~-~l~~l~~L~~L~Ls~---------------------N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l----  146 (605)
T 1m9s_A           96 ENK-IKDLS-SLKDLKKLKSLSLEH---------------------NGISDI--NGLVHLPQLESLYLGNNKITDI----  146 (605)
T ss_dssp             SSC-CCCCT-TSTTCTTCCEEECTT---------------------SCCCCC--GGGGGCTTCSEEECCSSCCCCC----
T ss_pred             CCC-CCCCh-hhccCCCCCEEEecC---------------------CCCCCC--ccccCCCccCEEECCCCccCCc----
Confidence            998 55555 688888888883211                     111121  2355677888898877765321    


Q ss_pred             hhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCCCCCCCCCcceEEecccc
Q 038658          351 EAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHLAVRRMS  425 (831)
Q Consensus       351 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~  425 (831)
                               ..+..+++|+.|+|++|.+..++. +..  +++|+.|+|++|.+.. ++.+..+++|+.|+|++|+
T Consensus       147 ---------~~l~~l~~L~~L~Ls~N~l~~~~~-l~~--l~~L~~L~Ls~N~i~~-l~~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          147 ---------TVLSRLTKLDTLSLEDNQISDIVP-LAG--LTKLQNLYLSKNHISD-LRALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             ---------GGGGSCTTCSEEECCSSCCCCCGG-GTT--CTTCCEEECCSSCCCB-CGGGTTCTTCSEEECCSEE
T ss_pred             ---------hhhcccCCCCEEECcCCcCCCchh-hcc--CCCCCEEECcCCCCCC-ChHHccCCCCCEEEccCCc
Confidence                     346677889999999988887766 443  7899999999987764 4678888999999998764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.37  E-value=6.6e-13  Score=128.15  Aligned_cols=121  Identities=30%  Similarity=0.421  Sum_probs=73.0

Q ss_pred             CcceEEccccccCCCccccccccccccc-CCcceEEEEeCCCCccccCc-cccCCCCCceeecCCCCCCccchh-hhccC
Q 038658          162 QHLRTFLPVCLSNSSQGFLAHSILPKLF-KLQRLRVFSLCGYWISELPD-SIGDLRYLRYLNLSGTQIRTLPES-VNKLY  238 (831)
Q Consensus       162 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~lp~-~~~~l~~Lr~L~L~~~~i~~lp~~-i~~L~  238 (831)
                      ++++.|.+.+      +.+. .+++..+ .+++|++|++++|.++.+|. .|..+++|++|++++|.++.+|.. +.+++
T Consensus        28 ~~l~~L~l~~------n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  100 (208)
T 2o6s_A           28 AQTTYLDLET------NSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLT  100 (208)
T ss_dssp             TTCSEEECCS------SCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             CCCcEEEcCC------CccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCcc
Confidence            4566664433      2232 3344433 67777777777777776654 356777777777777777766643 57777


Q ss_pred             CccEEeecCcCccccccc-cccCcccccccccCCCCCcccccCC-CCCccccccc
Q 038658          239 NLHTLSLEGCRGLRKLCA-GMGNLIKLHHLNNSNTDSLEEMPLG-IGKLTCLQTL  291 (831)
Q Consensus       239 ~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~-~~~L~~L~~L  291 (831)
                      +|++|++++|. +..+|. .++.+++|++|++++|. +..+|.. ++.+++|+.|
T Consensus       101 ~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L  153 (208)
T 2o6s_A          101 QLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYI  153 (208)
T ss_dssp             TCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEE
T ss_pred             CCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEE
Confidence            77777777765 334443 36777777777777776 3344432 4444444333

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.35  E-value=1.7e-12  Score=126.10  Aligned_cols=99  Identities=23%  Similarity=0.276  Sum_probs=62.7

Q ss_pred             cceEEEEeCCCCccccC-ccccCCCCCceeecCCCCCCcc-chhhhccCCccEEeecCcCcccccccc-ccCcccccccc
Q 038658          192 QRLRVFSLCGYWISELP-DSIGDLRYLRYLNLSGTQIRTL-PESVNKLYNLHTLSLEGCRGLRKLCAG-MGNLIKLHHLN  268 (831)
Q Consensus       192 ~~L~~L~L~~~~i~~lp-~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~  268 (831)
                      +.|++|++++|.++.+| ..|..+++|++|+|++|.|+.+ |..+.++++|++|+|++|. +..+|.. +..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~  110 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQLLL  110 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc-CCccCHhHccCCCCCCEEE
Confidence            45677777777776664 3566677777777777777655 5566777777777777754 4445444 56677777777


Q ss_pred             cCCCCCcccccCCCCCccccccc
Q 038658          269 NSNTDSLEEMPLGIGKLTCLQTL  291 (831)
Q Consensus       269 l~~~~~~~~~p~~~~~L~~L~~L  291 (831)
                      +++|.+....|..++.+++|+.|
T Consensus       111 L~~N~l~~~~~~~~~~l~~L~~L  133 (220)
T 2v9t_B          111 LNANKINCLRVDAFQDLHNLNLL  133 (220)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCCCEeCHHHcCCCCCCCEE
Confidence            77776333334445555555555

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.35  E-value=1.3e-12  Score=127.93  Aligned_cols=98  Identities=30%  Similarity=0.400  Sum_probs=67.8

Q ss_pred             cceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCCccch-hhhccCCccEEeecCcCccccccc-cccCcccccccc
Q 038658          192 QRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTLPE-SVNKLYNLHTLSLEGCRGLRKLCA-GMGNLIKLHHLN  268 (831)
Q Consensus       192 ~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~  268 (831)
                      ++|++|+|++|.++.+ |..|..+++|++|+|++|.|..+|. .+..+++|++|++++|. +..+|. .+..+++|++|+
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~  118 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLKELF  118 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc-CCccChhHhCcchhhCeEe
Confidence            5677777777777766 5667777777777777777777764 35777777777777765 444443 356777777777


Q ss_pred             cCCCCCcccccCCCCCccccccc
Q 038658          269 NSNTDSLEEMPLGIGKLTCLQTL  291 (831)
Q Consensus       269 l~~~~~~~~~p~~~~~L~~L~~L  291 (831)
                      +++|. +..+|..++.+++|++|
T Consensus       119 Ls~N~-l~~lp~~~~~l~~L~~L  140 (229)
T 3e6j_A          119 MCCNK-LTELPRGIERLTHLTHL  140 (229)
T ss_dssp             CCSSC-CCSCCTTGGGCTTCSEE
T ss_pred             ccCCc-ccccCcccccCCCCCEE
Confidence            77776 55677666666666666

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.34  E-value=1.9e-12  Score=129.52  Aligned_cols=97  Identities=26%  Similarity=0.263  Sum_probs=63.1

Q ss_pred             ccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCccccccc
Q 038658          188 LFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHL  267 (831)
Q Consensus       188 ~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L  267 (831)
                      +..+++|++|++++|.++.+| .++.+++|++|++++|.++.+|. +.++++|++|++++|. +..+|.. .. ++|++|
T Consensus        37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~~-~~-~~L~~L  111 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR-LKNLNGI-PS-ACLSRL  111 (263)
T ss_dssp             HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC-CSCCTTC-CC-SSCCEE
T ss_pred             hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc-cCCcCcc-cc-CcccEE
Confidence            346667777777777777766 56677777777777777777765 7777777777777764 4445542 23 677777


Q ss_pred             ccCCCCCcccccCCCCCccccccc
Q 038658          268 NNSNTDSLEEMPLGIGKLTCLQTL  291 (831)
Q Consensus       268 ~l~~~~~~~~~p~~~~~L~~L~~L  291 (831)
                      ++++|. +..+| .++.+++|+.|
T Consensus       112 ~L~~N~-l~~~~-~l~~l~~L~~L  133 (263)
T 1xeu_A          112 FLDNNE-LRDTD-SLIHLKNLEIL  133 (263)
T ss_dssp             ECCSSC-CSBSG-GGTTCTTCCEE
T ss_pred             EccCCc-cCCCh-hhcCcccccEE
Confidence            777776 44443 35555555555

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.33  E-value=2.4e-12  Score=124.90  Aligned_cols=98  Identities=16%  Similarity=0.069  Sum_probs=52.0

Q ss_pred             eEEEEeCCCCccccC--ccccCCCCCceeecCCCCCCccch-hhhccCCccEEeecCcCccccccccccCcccccccccC
Q 038658          194 LRVFSLCGYWISELP--DSIGDLRYLRYLNLSGTQIRTLPE-SVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNS  270 (831)
Q Consensus       194 L~~L~L~~~~i~~lp--~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~  270 (831)
                      +++|+|++|.++.++  ..|..+++|++|+|++|.|+.+|. .+.++++|++|++++|......|..++.+++|++|+++
T Consensus        34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  113 (220)
T 2v70_A           34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR  113 (220)
T ss_dssp             CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred             CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence            456666666665552  235566666666666666665543 55666666666666654333333345566666666666


Q ss_pred             CCCCcccccCCCCCccccccc
Q 038658          271 NTDSLEEMPLGIGKLTCLQTL  291 (831)
Q Consensus       271 ~~~~~~~~p~~~~~L~~L~~L  291 (831)
                      +|.+.+..|..++.+++|++|
T Consensus       114 ~N~l~~~~~~~~~~l~~L~~L  134 (220)
T 2v70_A          114 SNRITCVGNDSFIGLSSVRLL  134 (220)
T ss_dssp             TSCCCCBCTTSSTTCTTCSEE
T ss_pred             CCcCCeECHhHcCCCccCCEE
Confidence            665333223334444444333

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.33  E-value=1.5e-12  Score=137.24  Aligned_cols=93  Identities=23%  Similarity=0.262  Sum_probs=45.7

Q ss_pred             EEEeCCCCccccCccccCCCCCceeecCCCCCCccchh-hh-ccCCccEEeecCcCccccccccccCcccccccccCCCC
Q 038658          196 VFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPES-VN-KLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTD  273 (831)
Q Consensus       196 ~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~-i~-~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~  273 (831)
                      +++++++.++.+|..+.  ..+++|+|++|+|+.+|.. +. ++++|++|+|++|......|..+..+++|++|++++|.
T Consensus        22 ~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~   99 (361)
T 2xot_A           22 ILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH   99 (361)
T ss_dssp             EEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence            45555555555555443  2355555555555555433 33 55555555555554222222345555555555555555


Q ss_pred             CcccccC-CCCCccccccc
Q 038658          274 SLEEMPL-GIGKLTCLQTL  291 (831)
Q Consensus       274 ~~~~~p~-~~~~L~~L~~L  291 (831)
                       +..+|. .++.+++|+.|
T Consensus       100 -l~~~~~~~~~~l~~L~~L  117 (361)
T 2xot_A          100 -LHTLDEFLFSDLQALEVL  117 (361)
T ss_dssp             -CCEECTTTTTTCTTCCEE
T ss_pred             -CCcCCHHHhCCCcCCCEE
Confidence             333332 24444444444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.29  E-value=5.2e-12  Score=122.59  Aligned_cols=114  Identities=18%  Similarity=0.160  Sum_probs=84.3

Q ss_pred             cccccccccccc-CCcceEEEEeCCCCccccC-ccccCCCCCceeecCCCCCCccch-hhhccCCccEEeecCcCccccc
Q 038658          178 GFLAHSILPKLF-KLQRLRVFSLCGYWISELP-DSIGDLRYLRYLNLSGTQIRTLPE-SVNKLYNLHTLSLEGCRGLRKL  254 (831)
Q Consensus       178 ~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~lp-~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~l  254 (831)
                      |.+....+..++ .+++|++|+|++|.++.++ ..|..+++|++|+|++|.++.+|. .+..+++|++|++++|......
T Consensus        42 N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  121 (220)
T 2v70_A           42 NEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVG  121 (220)
T ss_dssp             SCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBC
T ss_pred             CcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeEC
Confidence            344443344434 8888888888888888774 478888888888888888887764 4788888888888887755555


Q ss_pred             cccccCcccccccccCCCCCcccccCCCCCccccccc
Q 038658          255 CAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTL  291 (831)
Q Consensus       255 p~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L  291 (831)
                      |..+..+++|++|++++|.+.+..|..++.+++|+.|
T Consensus       122 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  158 (220)
T 2v70_A          122 NDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTL  158 (220)
T ss_dssp             TTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEE
T ss_pred             HhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEE
Confidence            7778888888888888887444446667666666665

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.29  E-value=5.7e-12  Score=116.79  Aligned_cols=124  Identities=22%  Similarity=0.199  Sum_probs=93.1

Q ss_pred             CcceEEccccccCCCccccc-ccccccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCc-cchhhhccCC
Q 038658          162 QHLRTFLPVCLSNSSQGFLA-HSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRT-LPESVNKLYN  239 (831)
Q Consensus       162 ~~Lr~L~~~~~~~~~~~~~~-~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~-lp~~i~~L~~  239 (831)
                      ++|+.|.+.+      +.+. +.+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..+.++++
T Consensus        24 ~~L~~L~l~~------n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   96 (168)
T 2ell_A           24 AAVRELVLDN------CKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN   96 (168)
T ss_dssp             TSCSEEECCS------CBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTT
T ss_pred             ccCCEEECCC------CCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCC
Confidence            5666664433      2233 35555556888889999998888877 778888889999999988886 6777778889


Q ss_pred             ccEEeecCcCcccccc--ccccCcccccccccCCCCCcccccC----CCCCccccccccce
Q 038658          240 LHTLSLEGCRGLRKLC--AGMGNLIKLHHLNNSNTDSLEEMPL----GIGKLTCLQTLCNF  294 (831)
Q Consensus       240 L~~L~l~~~~~~~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~----~~~~L~~L~~L~~~  294 (831)
                      |++|++++|. +..+|  ..++.+++|++|++++|. +..+|.    .+..+++|+.|+..
T Consensus        97 L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~  155 (168)
T 2ell_A           97 LTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGY  155 (168)
T ss_dssp             CCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTE
T ss_pred             CCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCC
Confidence            9999998875 55555  668888889999998887 555665    57888888888443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.28  E-value=1.9e-12  Score=120.00  Aligned_cols=100  Identities=24%  Similarity=0.307  Sum_probs=85.0

Q ss_pred             CCcceEEEEeCCCCcc--ccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCccccccc
Q 038658          190 KLQRLRVFSLCGYWIS--ELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHL  267 (831)
Q Consensus       190 ~l~~L~~L~L~~~~i~--~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L  267 (831)
                      ..++|++|++++|.++  .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.....+|..++.+++|++|
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            4578999999999998  8898899999999999999999988 889999999999999987655588878889999999


Q ss_pred             ccCCCCCccccc--CCCCCccccccc
Q 038658          268 NNSNTDSLEEMP--LGIGKLTCLQTL  291 (831)
Q Consensus       268 ~l~~~~~~~~~p--~~~~~L~~L~~L  291 (831)
                      ++++|. +..+|  ..++.+++|++|
T Consensus       101 ~Ls~N~-l~~~~~~~~l~~l~~L~~L  125 (168)
T 2ell_A          101 NLSGNK-LKDISTLEPLKKLECLKSL  125 (168)
T ss_dssp             ECBSSS-CCSSGGGGGGSSCSCCCEE
T ss_pred             eccCCc-cCcchhHHHHhcCCCCCEE
Confidence            999998 55554  445555555555

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.28  E-value=1.7e-13  Score=144.83  Aligned_cols=108  Identities=15%  Similarity=0.119  Sum_probs=72.4

Q ss_pred             CcceEEccccccCCCccccccccc----ccccCCc-ceEEEEeCCCCcccc-CccccCC-----CCCceeecCCCCCCcc
Q 038658          162 QHLRTFLPVCLSNSSQGFLAHSIL----PKLFKLQ-RLRVFSLCGYWISEL-PDSIGDL-----RYLRYLNLSGTQIRTL  230 (831)
Q Consensus       162 ~~Lr~L~~~~~~~~~~~~~~~~~~----~~~~~l~-~L~~L~L~~~~i~~l-p~~~~~l-----~~Lr~L~L~~~~i~~l  230 (831)
                      ++|+.|.+.+      +.+....+    ..+..++ +|++|+|++|.++.. +..+..+     ++|++|+|++|.++..
T Consensus        22 ~~L~~L~Ls~------n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~   95 (362)
T 3goz_A           22 HGVTSLDLSL------NNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYK   95 (362)
T ss_dssp             TTCCEEECTT------SCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred             CCceEEEccC------CCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChH
Confidence            3488885533      33433333    4444777 899999999988765 5555554     8899999999988854


Q ss_pred             c-hh----hhcc-CCccEEeecCcCccccccccc----cC-cccccccccCCCCCc
Q 038658          231 P-ES----VNKL-YNLHTLSLEGCRGLRKLCAGM----GN-LIKLHHLNNSNTDSL  275 (831)
Q Consensus       231 p-~~----i~~L-~~L~~L~l~~~~~~~~lp~~i----~~-L~~L~~L~l~~~~~~  275 (831)
                      + ..    +..+ ++|++|++++|......+..+    .. .++|++|++++|.+.
T Consensus        96 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  151 (362)
T 3goz_A           96 SSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG  151 (362)
T ss_dssp             CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred             HHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence            3 43    3444 889999999987444333333    33 258999999988733

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.28  E-value=3.4e-12  Score=115.62  Aligned_cols=122  Identities=18%  Similarity=0.194  Sum_probs=97.0

Q ss_pred             CcceEEccccccCCCccccc-ccccccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCc-cchhhhccCC
Q 038658          162 QHLRTFLPVCLSNSSQGFLA-HSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRT-LPESVNKLYN  239 (831)
Q Consensus       162 ~~Lr~L~~~~~~~~~~~~~~-~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~-lp~~i~~L~~  239 (831)
                      ++++.|.+.+      +.+. +.+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..++.+++
T Consensus        17 ~~l~~L~l~~------n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~   89 (149)
T 2je0_A           17 SDVKELVLDN------SRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN   89 (149)
T ss_dssp             GGCSEEECTT------CBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred             ccCeEEEccC------CcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence            5666664433      2343 45666666899999999999999888 778999999999999999997 7888888999


Q ss_pred             ccEEeecCcCcccccc--ccccCcccccccccCCCCCcccccC----CCCCcccccccc
Q 038658          240 LHTLSLEGCRGLRKLC--AGMGNLIKLHHLNNSNTDSLEEMPL----GIGKLTCLQTLC  292 (831)
Q Consensus       240 L~~L~l~~~~~~~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~----~~~~L~~L~~L~  292 (831)
                      |++|++++|. +..+|  ..++.+++|++|++++|. +..+|.    .++.+++|+.|+
T Consensus        90 L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~  146 (149)
T 2je0_A           90 LTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLD  146 (149)
T ss_dssp             CCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEET
T ss_pred             CCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCccccc
Confidence            9999999986 55544  779999999999999997 555654    577888888773

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.25  E-value=1.5e-11  Score=116.33  Aligned_cols=99  Identities=24%  Similarity=0.309  Sum_probs=56.1

Q ss_pred             cceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccc-hhhhccCCccEEeecCcCccccccccccCcccccccccC
Q 038658          192 QRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLP-ESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNS  270 (831)
Q Consensus       192 ~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~  270 (831)
                      ++|++|++++|.++.+|..|..+++|++|+|++|.|+.++ ..+.++++|++|++++|......|..+..+++|++|+++
T Consensus        31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  110 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH  110 (193)
T ss_dssp             TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence            3566666666666666666666666666666666666554 345666666666666655333333446666666666666


Q ss_pred             CCCCcccccCC-CCCccccccc
Q 038658          271 NTDSLEEMPLG-IGKLTCLQTL  291 (831)
Q Consensus       271 ~~~~~~~~p~~-~~~L~~L~~L  291 (831)
                      +|. +..+|.+ +..+++|+.|
T Consensus       111 ~N~-l~~~~~~~~~~l~~L~~L  131 (193)
T 2wfh_A          111 GND-ISVVPEGAFNDLSALSHL  131 (193)
T ss_dssp             SSC-CCBCCTTTTTTCTTCCEE
T ss_pred             CCC-CCeeChhhhhcCccccEE
Confidence            665 3344432 4444444443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.24  E-value=2.3e-12  Score=116.73  Aligned_cols=100  Identities=20%  Similarity=0.240  Sum_probs=87.5

Q ss_pred             CCcceEEEEeCCCCcc--ccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCccccccc
Q 038658          190 KLQRLRVFSLCGYWIS--ELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHL  267 (831)
Q Consensus       190 ~l~~L~~L~L~~~~i~--~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L  267 (831)
                      ..++|++|++++|.++  .+|..++.+++|++|++++|.++.+ ..++.+++|++|++++|.....+|..++.+++|++|
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            4578999999999998  8899899999999999999999988 789999999999999987555588888889999999


Q ss_pred             ccCCCCCccccc--CCCCCccccccc
Q 038658          268 NNSNTDSLEEMP--LGIGKLTCLQTL  291 (831)
Q Consensus       268 ~l~~~~~~~~~p--~~~~~L~~L~~L  291 (831)
                      ++++|. +..+|  ..++.+++|++|
T Consensus        94 ~ls~N~-i~~~~~~~~~~~l~~L~~L  118 (149)
T 2je0_A           94 NLSGNK-IKDLSTIEPLKKLENLKSL  118 (149)
T ss_dssp             ECTTSC-CCSHHHHGGGGGCTTCCEE
T ss_pred             ECCCCc-CCChHHHHHHhhCCCCCEE
Confidence            999998 55543  667777777777

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.23  E-value=1.2e-11  Score=117.10  Aligned_cols=99  Identities=19%  Similarity=0.183  Sum_probs=52.5

Q ss_pred             ceEEEEeCCCCccccCcc--ccCCCCCceeecCCCCCCcc-chhhhccCCccEEeecCcCccccccccccCccccccccc
Q 038658          193 RLRVFSLCGYWISELPDS--IGDLRYLRYLNLSGTQIRTL-PESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNN  269 (831)
Q Consensus       193 ~L~~L~L~~~~i~~lp~~--~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l  269 (831)
                      .|++|++++|.++.++..  |+.+++|++|+|++|.|+.+ |..+.++++|++|++++|......|..++.+++|++|++
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            555566666655555432  55556666666666655544 445555666666666655433333334555566666666


Q ss_pred             CCCCCcccccCCCCCccccccc
Q 038658          270 SNTDSLEEMPLGIGKLTCLQTL  291 (831)
Q Consensus       270 ~~~~~~~~~p~~~~~L~~L~~L  291 (831)
                      ++|.+.+..|..++.+++|++|
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L  131 (192)
T 1w8a_A          110 YDNQISCVMPGSFEHLNSLTSL  131 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEE
T ss_pred             CCCcCCeeCHHHhhcCCCCCEE
Confidence            6555333334444444444444

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.22  E-value=1.4e-11  Score=114.97  Aligned_cols=127  Identities=20%  Similarity=0.127  Sum_probs=101.0

Q ss_pred             cccccCCcceEEccccccCCCcccccccccccccCCc-ceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhh
Q 038658          156 EDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQ-RLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESV  234 (831)
Q Consensus       156 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i  234 (831)
                      +.+.++.+|+.|.+.+.      .+. .+ +.+..+. +|++|++++|.++.+ ..++.+++|++|++++|.|+.+|+.+
T Consensus        13 ~~~~~~~~L~~L~l~~n------~l~-~i-~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~   83 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGY------KIP-VI-ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGL   83 (176)
T ss_dssp             CEEECTTSCEEEECTTS------CCC-SC-CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCH
T ss_pred             HhcCCcCCceEEEeeCC------CCc-hh-HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcch
Confidence            44566788888866443      232 23 3455444 999999999999988 67899999999999999999998665


Q ss_pred             -hccCCccEEeecCcCccccccc--cccCcccccccccCCCCCcccccCC----CCCccccccccc
Q 038658          235 -NKLYNLHTLSLEGCRGLRKLCA--GMGNLIKLHHLNNSNTDSLEEMPLG----IGKLTCLQTLCN  293 (831)
Q Consensus       235 -~~L~~L~~L~l~~~~~~~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~----~~~L~~L~~L~~  293 (831)
                       +.+++|++|++++|. +..+|.  .++.+++|++|++++|. +..+|..    ++.+++|+.|+.
T Consensus        84 ~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~  147 (176)
T 1a9n_A           84 DQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDF  147 (176)
T ss_dssp             HHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETT
T ss_pred             hhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCC
Confidence             899999999999976 577776  78899999999999998 5677764    788888888844

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.21  E-value=9.9e-12  Score=131.01  Aligned_cols=105  Identities=22%  Similarity=0.141  Sum_probs=77.4

Q ss_pred             ccccccCCcceEEEEeCCCCccccCc-ccc-CCCCCceeecCCCCCCccc-hhhhccCCccEEeecCcCcccccc-cccc
Q 038658          184 ILPKLFKLQRLRVFSLCGYWISELPD-SIG-DLRYLRYLNLSGTQIRTLP-ESVNKLYNLHTLSLEGCRGLRKLC-AGMG  259 (831)
Q Consensus       184 ~~~~~~~l~~L~~L~L~~~~i~~lp~-~~~-~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp-~~i~  259 (831)
                      +|..+.  +.+++|+|++|.++.++. .+. .+.+|++|+|++|+|+.+| ..+.++++|++|+|++|. +..+| ..+.
T Consensus        33 iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~  109 (361)
T 2xot_A           33 VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFS  109 (361)
T ss_dssp             CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTT
T ss_pred             cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc-CCcCCHHHhC
Confidence            444443  347888999888888754 455 8888999999988888776 468888899999998876 44444 4588


Q ss_pred             CcccccccccCCCCCcccccCCCCCccccccc
Q 038658          260 NLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTL  291 (831)
Q Consensus       260 ~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L  291 (831)
                      .+++|++|++++|.+....|..++.+++|+.|
T Consensus       110 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L  141 (361)
T 2xot_A          110 DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL  141 (361)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             CCcCCCEEECCCCcccEECHHHhCCcccCCEE
Confidence            88889999998888444445557777766666

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.20  E-value=3.1e-11  Score=138.71  Aligned_cols=106  Identities=25%  Similarity=0.346  Sum_probs=95.3

Q ss_pred             cccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcccc
Q 038658          185 LPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKL  264 (831)
Q Consensus       185 ~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L  264 (831)
                      +..+..++.|++|+|++|.+..+|..+..+++|++|+|++|.|+.+|..+++|++|++|+|++|. +..+|..|++|++|
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L  295 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQL  295 (727)
T ss_dssp             -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTC
T ss_pred             hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCC
Confidence            34444999999999999999999988889999999999999999999999999999999999987 55899999999999


Q ss_pred             cccccCCCCCcccccCCCCCcccccccc
Q 038658          265 HHLNNSNTDSLEEMPLGIGKLTCLQTLC  292 (831)
Q Consensus       265 ~~L~l~~~~~~~~~p~~~~~L~~L~~L~  292 (831)
                      ++|+|++|. ++.+|.+|++|++|++|.
T Consensus       296 ~~L~L~~N~-l~~lp~~~~~l~~L~~L~  322 (727)
T 4b8c_D          296 KYFYFFDNM-VTTLPWEFGNLCNLQFLG  322 (727)
T ss_dssp             SEEECCSSC-CCCCCSSTTSCTTCCCEE
T ss_pred             CEEECCCCC-CCccChhhhcCCCccEEe
Confidence            999999998 679999999999999983

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.18  E-value=3.9e-11  Score=113.59  Aligned_cols=109  Identities=17%  Similarity=0.129  Sum_probs=88.1

Q ss_pred             cceEEccccccCCCccccccccccc-ccCCcceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCCccch-hhhccCC
Q 038658          163 HLRTFLPVCLSNSSQGFLAHSILPK-LFKLQRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTLPE-SVNKLYN  239 (831)
Q Consensus       163 ~Lr~L~~~~~~~~~~~~~~~~~~~~-~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~  239 (831)
                      +++.|.+.+      +.+....+.. +..+++|++|+|++|.++.+ |..|..+++|++|+|++|.|+.+|. .+..+++
T Consensus        30 ~l~~L~l~~------n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  103 (192)
T 1w8a_A           30 HTTELLLND------NELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQ  103 (192)
T ss_dssp             TCSEEECCS------CCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTT
T ss_pred             CCCEEECCC------CcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCC
Confidence            777875543      3343333333 45899999999999999988 7889999999999999999998765 5899999


Q ss_pred             ccEEeecCcCccccccccccCcccccccccCCCCCccc
Q 038658          240 LHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEE  277 (831)
Q Consensus       240 L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~  277 (831)
                      |++|++++|......|..++.+++|++|++++|.....
T Consensus       104 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A          104 LKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            99999999886666788899999999999999985433

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.15  E-value=6.7e-12  Score=144.28  Aligned_cols=122  Identities=22%  Similarity=0.264  Sum_probs=103.3

Q ss_pred             cccccCCcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhh
Q 038658          156 EDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVN  235 (831)
Q Consensus       156 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~  235 (831)
                      ..+..++.|+.|.+..      +.+. .+|..++.+++|++|+|++|.++.+|..|+++++|++|+|++|.|+.+|..++
T Consensus       218 ~~~~~l~~L~~L~Ls~------n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~  290 (727)
T 4b8c_D          218 DSKYDDQLWHALDLSN------LQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELG  290 (727)
T ss_dssp             ----CCCCCCEEECTT------SCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGG
T ss_pred             hhhccCCCCcEEECCC------CCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhc
Confidence            3466778888885543      3333 67888889999999999999999999999999999999999999999999999


Q ss_pred             ccCCccEEeecCcCccccccccccCcccccccccCCCCCcccccCCCCCc
Q 038658          236 KLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKL  285 (831)
Q Consensus       236 ~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L  285 (831)
                      +|++|++|+|++|. +..+|..|++|++|++|+|++|.+.+.+|..++.+
T Consensus       291 ~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~  339 (727)
T 4b8c_D          291 SCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEK  339 (727)
T ss_dssp             GGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHH
T ss_pred             CCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHHhhc
Confidence            99999999999985 67899999999999999999999666677655443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.15  E-value=2.1e-11  Score=113.86  Aligned_cols=101  Identities=26%  Similarity=0.352  Sum_probs=84.9

Q ss_pred             cccCCcceEEEEeCCCCccccCccccCCC-CCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccc-cCcccc
Q 038658          187 KLFKLQRLRVFSLCGYWISELPDSIGDLR-YLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGM-GNLIKL  264 (831)
Q Consensus       187 ~~~~l~~L~~L~L~~~~i~~lp~~~~~l~-~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i-~~L~~L  264 (831)
                      .+..+.+|++|++++|.++.+|. +..+. +|++|++++|.++.+ ..++.+++|++|++++|. +..+|..+ +.+++|
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDL   90 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTC
T ss_pred             hcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCC
Confidence            34578899999999999998865 55555 999999999999988 689999999999999986 55677554 899999


Q ss_pred             cccccCCCCCcccccC--CCCCccccccc
Q 038658          265 HHLNNSNTDSLEEMPL--GIGKLTCLQTL  291 (831)
Q Consensus       265 ~~L~l~~~~~~~~~p~--~~~~L~~L~~L  291 (831)
                      ++|++++|. ++.+|.  .++.+++|+.|
T Consensus        91 ~~L~L~~N~-i~~~~~~~~l~~l~~L~~L  118 (176)
T 1a9n_A           91 TELILTNNS-LVELGDLDPLASLKSLTYL  118 (176)
T ss_dssp             CEEECCSCC-CCCGGGGGGGGGCTTCCEE
T ss_pred             CEEECCCCc-CCcchhhHhhhcCCCCCEE
Confidence            999999998 677775  57777777766

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.15  E-value=8.1e-11  Score=111.33  Aligned_cols=105  Identities=22%  Similarity=0.283  Sum_probs=83.0

Q ss_pred             CcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCccccC-ccccCCCCCceeecCCCCCCccch-hhhccCC
Q 038658          162 QHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELP-DSIGDLRYLRYLNLSGTQIRTLPE-SVNKLYN  239 (831)
Q Consensus       162 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp-~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~  239 (831)
                      ++++.|.+.+      +.+ ..+|..+..+++|++|+|++|.++.++ ..|..+++|++|+|++|.|+.+|. .+..+++
T Consensus        31 ~~l~~L~L~~------n~i-~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~  103 (193)
T 2wfh_A           31 RDVTELYLDG------NQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKS  103 (193)
T ss_dssp             TTCCEEECCS------SCC-CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTT
T ss_pred             CCCCEEECCC------CcC-chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCC
Confidence            5777775543      333 356666668999999999999998884 568899999999999999988764 6889999


Q ss_pred             ccEEeecCcCccccccc-cccCcccccccccCCCCC
Q 038658          240 LHTLSLEGCRGLRKLCA-GMGNLIKLHHLNNSNTDS  274 (831)
Q Consensus       240 L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~  274 (831)
                      |++|++++|. +..+|. .+..+++|++|++++|..
T Consensus       104 L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A          104 LRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCe
Confidence            9999999976 555555 488899999999998873

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.11  E-value=9.6e-11  Score=130.21  Aligned_cols=97  Identities=24%  Similarity=0.257  Sum_probs=83.6

Q ss_pred             ceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcccccccccCCC
Q 038658          193 RLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNT  272 (831)
Q Consensus       193 ~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~  272 (831)
                      .|++|+|++|.++.+|. |+.+++|++|+|++|.|+.+|..++++++|++|+|++|. +..+| .++.+++|++|++++|
T Consensus       442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~Ls~N  518 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNN  518 (567)
T ss_dssp             TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSS
T ss_pred             CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEECCCC
Confidence            58899999999999886 899999999999999999999999999999999999976 55688 7999999999999999


Q ss_pred             CCcccc-cCCCCCcccccccc
Q 038658          273 DSLEEM-PLGIGKLTCLQTLC  292 (831)
Q Consensus       273 ~~~~~~-p~~~~~L~~L~~L~  292 (831)
                      .+.+.. |..++.+++|+.|.
T Consensus       519 ~l~~~~~p~~l~~l~~L~~L~  539 (567)
T 1dce_A          519 RLQQSAAIQPLVSCPRLVLLN  539 (567)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEE
T ss_pred             CCCCCCCcHHHhcCCCCCEEE
Confidence            844433 88899999998884

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.09  E-value=8e-11  Score=130.85  Aligned_cols=138  Identities=22%  Similarity=0.252  Sum_probs=104.3

Q ss_pred             ccccccccCCcceEEEE-eCCCCccccCc------cccC--CCCCceeecCCCCCCccchhhhccCCccEEeecCcCccc
Q 038658          182 HSILPKLFKLQRLRVFS-LCGYWISELPD------SIGD--LRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLR  252 (831)
Q Consensus       182 ~~~~~~~~~l~~L~~L~-L~~~~i~~lp~------~~~~--l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~  252 (831)
                      +..|..+..+++|+.|+ ++.|.+..++.      .+..  ...|++|+|++|.++.+|. ++.+++|++|++++|. +.
T Consensus       399 ~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~-l~  476 (567)
T 1dce_A          399 LYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR-LR  476 (567)
T ss_dssp             GGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSC-CC
T ss_pred             cCCHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccc-cc
Confidence            33445555888888888 56554433321      1111  1359999999999999997 9999999999999986 56


Q ss_pred             cccccccCcccccccccCCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccc-cccccCCC
Q 038658          253 KLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLE-NAQLDGKK  331 (831)
Q Consensus       253 ~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~-~~~l~~~~  331 (831)
                      .+|..++.+++|++|++++|. +..+| .++.+++|+.|.                    |. .+.+..+. ...+..++
T Consensus       477 ~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~--------------------Ls-~N~l~~~~~p~~l~~l~  533 (567)
T 1dce_A          477 ALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELL--------------------LC-NNRLQQSAAIQPLVSCP  533 (567)
T ss_dssp             CCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEE--------------------CC-SSCCCSSSTTGGGGGCT
T ss_pred             ccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEE--------------------CC-CCCCCCCCCcHHHhcCC
Confidence            899999999999999999998 66688 899999999992                    22 33344444 45677788


Q ss_pred             CcceEEEEeecCC
Q 038658          332 NLKVLMLRWTNST  344 (831)
Q Consensus       332 ~L~~L~l~~~~~~  344 (831)
                      +|+.|+++.|...
T Consensus       534 ~L~~L~L~~N~l~  546 (567)
T 1dce_A          534 RLVLLNLQGNSLC  546 (567)
T ss_dssp             TCCEEECTTSGGG
T ss_pred             CCCEEEecCCcCC
Confidence            8999999877653

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=99.06  E-value=5.6e-11  Score=134.38  Aligned_cols=84  Identities=15%  Similarity=0.197  Sum_probs=75.1

Q ss_pred             CCchHHHHhccccCChhh-hhHhhhhCCCCCCCccCHHHHHHHHHHcCCcCCCCCCCchHHHHHHHHHHHHhcccceeec
Q 038658           18 CDIIPALRVSYYYLSAPL-KQCFAYCSLFPKDYEFEEEEIILLWSAVGFLDHRKSENPCEDLGRKFFQELRARSFFQQSS   96 (831)
Q Consensus        18 ~~i~~~L~lSY~~L~~~~-k~cfl~~~~fp~~~~i~~~~Li~~wi~~G~i~~~~~~~~~~~~~~~~~~~Lv~~~ll~~~~   96 (831)
                      +.|..+|++||+.||++. |.||+|||+||+++.|+++.++.+|+++|           ++.++.++++|+++||++.. 
T Consensus       353 ~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eedAe~~L~eLvdRSLLq~d-  420 (1221)
T 1vt4_I          353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSDVMVVVNKLHKYSLVEKQ-  420 (1221)
T ss_dssp             HHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHHHHHHHHHHHTSSSSSBC-
T ss_pred             hHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HHHHHHHHHHHHhhCCEEEe-
Confidence            579999999999999998 99999999999999999999999999988           13488999999999999985 


Q ss_pred             CCcccEeecHHHHHHHH
Q 038658           97 NNKSLFVMHDLINDLAH  113 (831)
Q Consensus        97 ~~~~~~~mHdlv~d~a~  113 (831)
                      +....|+|||++++++.
T Consensus       421 ~~~~rYrMHDLllELr~  437 (1221)
T 1vt4_I          421 PKESTISIPSIYLELKV  437 (1221)
T ss_dssp             SSSSEEBCCCHHHHHHH
T ss_pred             CCCCEEEehHHHHHHhc
Confidence            34568999999999663

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.03  E-value=2e-12  Score=123.52  Aligned_cols=101  Identities=22%  Similarity=0.283  Sum_probs=75.2

Q ss_pred             cccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcccccc
Q 038658          187 KLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHH  266 (831)
Q Consensus       187 ~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~  266 (831)
                      .+..+++|++|++++|.++.+| .++.+++|++|++++|.++.+|..+..+++|++|++++|. +..+| .++.+++|++
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~~~l~~L~~  119 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS-GIEKLVNLRV  119 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HHHHHHHSSE
T ss_pred             HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCC-ccccCCCCCE
Confidence            5667888888888888888877 7788888888888888888888877778888888888874 55566 5778888888


Q ss_pred             cccCCCCCcccccC--CCCCccccccc
Q 038658          267 LNNSNTDSLEEMPL--GIGKLTCLQTL  291 (831)
Q Consensus       267 L~l~~~~~~~~~p~--~~~~L~~L~~L  291 (831)
                      |++++|. +..+|.  .++.+++|++|
T Consensus       120 L~l~~N~-i~~~~~~~~l~~l~~L~~L  145 (198)
T 1ds9_A          120 LYMSNNK-ITNWGEIDKLAALDKLEDL  145 (198)
T ss_dssp             EEESEEE-CCCHHHHHHHTTTTTCSEE
T ss_pred             EECCCCc-CCchhHHHHHhcCCCCCEE
Confidence            8888876 444332  35555555554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.01  E-value=7.8e-10  Score=103.27  Aligned_cols=98  Identities=30%  Similarity=0.422  Sum_probs=62.3

Q ss_pred             cceEEEEeCCCCccccCc-cccCCCCCceeecCCCCCCccchh-hhccCCccEEeecCcCccccccc-cccCcccccccc
Q 038658          192 QRLRVFSLCGYWISELPD-SIGDLRYLRYLNLSGTQIRTLPES-VNKLYNLHTLSLEGCRGLRKLCA-GMGNLIKLHHLN  268 (831)
Q Consensus       192 ~~L~~L~L~~~~i~~lp~-~~~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~  268 (831)
                      ++|++|++++|.++.+|. .|+.+++|++|++++|.++.+|.. ++.+++|++|++++|. +..+|. .++.+++|++|+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~  106 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKELA  106 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC-ccccCHHHhhCCcccCEEE
Confidence            467777777777776643 456777777777777777766643 4677777777777765 334433 356777777777


Q ss_pred             cCCCCCcccccCC-CCCccccccc
Q 038658          269 NSNTDSLEEMPLG-IGKLTCLQTL  291 (831)
Q Consensus       269 l~~~~~~~~~p~~-~~~L~~L~~L  291 (831)
                      +++|. +..+|.+ ++.+++|++|
T Consensus       107 l~~N~-l~~~~~~~~~~l~~L~~L  129 (177)
T 2o6r_A          107 LDTNQ-LKSVPDGIFDRLTSLQKI  129 (177)
T ss_dssp             CCSSC-CSCCCTTTTTTCTTCCEE
T ss_pred             CcCCc-ceEeCHHHhcCCcccCEE
Confidence            77776 4445543 3445444444

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.00  E-value=4.1e-10  Score=104.35  Aligned_cols=94  Identities=22%  Similarity=0.294  Sum_probs=69.4

Q ss_pred             cccccccCCcceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCCccchh-hhccCCccEEeecCcCcccccccc-cc
Q 038658          183 SILPKLFKLQRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTLPES-VNKLYNLHTLSLEGCRGLRKLCAG-MG  259 (831)
Q Consensus       183 ~~~~~~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~~-i~  259 (831)
                      .+|..+.  ++|++|+|++|.++.+ |..|+.+++|++|+|++|+|+.+|.. +.++++|++|+|++|. +..+|.. ++
T Consensus        26 ~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~  102 (174)
T 2r9u_A           26 SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFD  102 (174)
T ss_dssp             SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTT
T ss_pred             ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc-cceeCHHHhc
Confidence            4455443  6788888888888877 56778888888888888888888765 4788888888888865 5555554 78


Q ss_pred             CcccccccccCCCCCcccccC
Q 038658          260 NLIKLHHLNNSNTDSLEEMPL  280 (831)
Q Consensus       260 ~L~~L~~L~l~~~~~~~~~p~  280 (831)
                      .+++|++|++++|. +...+.
T Consensus       103 ~l~~L~~L~L~~N~-~~c~~~  122 (174)
T 2r9u_A          103 NLKSLTHIYLYNNP-WDCECR  122 (174)
T ss_dssp             TCTTCSEEECCSSC-BCTTBG
T ss_pred             cccCCCEEEeCCCC-cccccc
Confidence            88888888888887 443443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.97  E-value=1.8e-09  Score=112.07  Aligned_cols=95  Identities=8%  Similarity=0.097  Sum_probs=59.9

Q ss_pred             CcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccc-hhhhc--------cCCccEEeecCcCccccccc-cccC
Q 038658          191 LQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLP-ESVNK--------LYNLHTLSLEGCRGLRKLCA-GMGN  260 (831)
Q Consensus       191 l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~--------L~~L~~L~l~~~~~~~~lp~-~i~~  260 (831)
                      +++|++|||++|.+......-+.+..++++.+..+   .+| ..|.+        +.+|+.|++.+  .+..++. .|.+
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~  122 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKG  122 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTT
T ss_pred             hccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhhc
Confidence            77899999999988722111122333555665555   344 34566        88888888887  3555554 4888


Q ss_pred             cccccccccCCCCCcccccC-CCCCccccccc
Q 038658          261 LIKLHHLNNSNTDSLEEMPL-GIGKLTCLQTL  291 (831)
Q Consensus       261 L~~L~~L~l~~~~~~~~~p~-~~~~L~~L~~L  291 (831)
                      +++|+.+++++|. +..++. .|....++..+
T Consensus       123 ~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l  153 (329)
T 3sb4_A          123 CDNLKICQIRKKT-APNLLPEALADSVTAIFI  153 (329)
T ss_dssp             CTTCCEEEBCCSS-CCEECTTSSCTTTCEEEE
T ss_pred             CcccceEEcCCCC-ccccchhhhcCCCceEEe
Confidence            8888888888887 434443 36665555554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.97  E-value=1.1e-09  Score=101.47  Aligned_cols=94  Identities=23%  Similarity=0.402  Sum_probs=82.7

Q ss_pred             EEEEeCCCCccccCccccCCCCCceeecCCCCCCcc-chhhhccCCccEEeecCcCcccccccc-ccCcccccccccCCC
Q 038658          195 RVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTL-PESVNKLYNLHTLSLEGCRGLRKLCAG-MGNLIKLHHLNNSNT  272 (831)
Q Consensus       195 ~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~l~~~  272 (831)
                      ++++++++.++.+|..+.  .+|++|+|++|.|+.+ |..++++++|++|+|++|. +..+|.. ++++++|++|++++|
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCC
Confidence            689999999999998875  8999999999999988 5688999999999999986 6667765 689999999999999


Q ss_pred             CCcccccCC-CCCcccccccc
Q 038658          273 DSLEEMPLG-IGKLTCLQTLC  292 (831)
Q Consensus       273 ~~~~~~p~~-~~~L~~L~~L~  292 (831)
                      . +..+|.+ ++.+++|+.|.
T Consensus        92 ~-l~~l~~~~~~~l~~L~~L~  111 (174)
T 2r9u_A           92 H-LKSIPRGAFDNLKSLTHIY  111 (174)
T ss_dssp             C-CCCCCTTTTTTCTTCSEEE
T ss_pred             c-cceeCHHHhccccCCCEEE
Confidence            8 6677765 89999999883

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.95  E-value=1.8e-09  Score=100.81  Aligned_cols=108  Identities=24%  Similarity=0.274  Sum_probs=87.0

Q ss_pred             CCcceEEccccccCCCcccccccccccc-cCCcceEEEEeCCCCccccCc-cccCCCCCceeecCCCCCCccchh-hhcc
Q 038658          161 IQHLRTFLPVCLSNSSQGFLAHSILPKL-FKLQRLRVFSLCGYWISELPD-SIGDLRYLRYLNLSGTQIRTLPES-VNKL  237 (831)
Q Consensus       161 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~L~~~~i~~lp~-~~~~l~~Lr~L~L~~~~i~~lp~~-i~~L  237 (831)
                      .++++.|.+.+      +.+. .+++.. ..+++|++|++++|.++.+|. .|+.+++|++|++++|.++.+|.. +..+
T Consensus        27 ~~~l~~L~l~~------n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l   99 (177)
T 2o6r_A           27 PSSATRLELES------NKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKL   99 (177)
T ss_dssp             CTTCSEEECCS------SCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CCCCcEEEeCC------Cccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCC
Confidence            36788886543      3333 445554 489999999999999999865 468999999999999999988764 6899


Q ss_pred             CCccEEeecCcCcccccccc-ccCcccccccccCCCCCcc
Q 038658          238 YNLHTLSLEGCRGLRKLCAG-MGNLIKLHHLNNSNTDSLE  276 (831)
Q Consensus       238 ~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~~~  276 (831)
                      ++|++|++++|. +..+|.. +..+++|++|++++|....
T Consensus       100 ~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A          100 TQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             TTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCeec
Confidence            999999999986 5566665 6889999999999998444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.94  E-value=1.4e-09  Score=100.36  Aligned_cols=81  Identities=30%  Similarity=0.406  Sum_probs=40.3

Q ss_pred             cceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCCccchh-hhccCCccEEeecCcCccccccc-cccCcccccccc
Q 038658          192 QRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTLPES-VNKLYNLHTLSLEGCRGLRKLCA-GMGNLIKLHHLN  268 (831)
Q Consensus       192 ~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~  268 (831)
                      +.|++|+|++|.++.+ |..|..+++|++|+|++|+|+.+|.. +.++++|++|+|++|. +..+|. .+..+++|++|+
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~  108 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIW  108 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc-cCEeCHHHhcCCCCCCEEE
Confidence            4455555555555544 34455555555555555555555432 3455555555555543 333332 245555555555


Q ss_pred             cCCCC
Q 038658          269 NSNTD  273 (831)
Q Consensus       269 l~~~~  273 (831)
                      +++|.
T Consensus       109 L~~N~  113 (170)
T 3g39_A          109 LLNNP  113 (170)
T ss_dssp             CCSSC
T ss_pred             eCCCC
Confidence            55554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.94  E-value=1.1e-11  Score=118.18  Aligned_cols=126  Identities=21%  Similarity=0.233  Sum_probs=103.3

Q ss_pred             ccccCCcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhc
Q 038658          157 DLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNK  236 (831)
Q Consensus       157 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~  236 (831)
                      .+..+++|+.|.+.+      +.+.. +| .+..+++|++|++++|.++.+|..+..+++|++|++++|.++.+| .++.
T Consensus        43 ~~~~l~~L~~L~ls~------n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~  113 (198)
T 1ds9_A           43 TLSTLKACKHLALST------NNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEK  113 (198)
T ss_dssp             HHHHTTTCSEEECSE------EEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHH
T ss_pred             HHhcCCCCCEEECCC------CCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cccc
Confidence            567889999996543      33333 45 666999999999999999999988888999999999999999987 7999


Q ss_pred             cCCccEEeecCcCccccccc--cccCcccccccccCCCCCcccccCC----------CCCcccccccc
Q 038658          237 LYNLHTLSLEGCRGLRKLCA--GMGNLIKLHHLNNSNTDSLEEMPLG----------IGKLTCLQTLC  292 (831)
Q Consensus       237 L~~L~~L~l~~~~~~~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~----------~~~L~~L~~L~  292 (831)
                      +++|++|++++|. +..+|.  .+..+++|++|++++|...+..|..          +..+++|+.|+
T Consensus       114 l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          114 LVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             CCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            9999999999976 555543  6899999999999999855554543          67788888874

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.92  E-value=6.5e-10  Score=138.37  Aligned_cols=90  Identities=18%  Similarity=0.254  Sum_probs=79.5

Q ss_pred             CCchHHHHhccccCChhhhhHhhhhCCCCCCCccCHHHHHHHHHHcCCcCCCCCCCchHHHHHHHHHHHHhcccceeec-
Q 038658           18 CDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWSAVGFLDHRKSENPCEDLGRKFFQELRARSFFQQSS-   96 (831)
Q Consensus        18 ~~i~~~L~lSY~~L~~~~k~cfl~~~~fp~~~~i~~~~Li~~wi~~G~i~~~~~~~~~~~~~~~~~~~Lv~~~ll~~~~-   96 (831)
                      +.+..+|++||+.||.++|.||+|||+||+++.|+++.++..|.++            ++.++.++++|++++|++... 
T Consensus       362 ~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~~~l~~L~~~sl~~~~~~  429 (1249)
T 3sfz_A          362 EALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEEVEDILQEFVNKSLLFCNRN  429 (1249)
T ss_dssp             HHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSCEEEES
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HHHHHHHHHHHHhccceEEecC
Confidence            3589999999999999999999999999999999999999999554            366899999999999999764 


Q ss_pred             CCcccEeecHHHHHHHHHHhcCc
Q 038658           97 NNKSLFVMHDLINDLAHWAAGEI  119 (831)
Q Consensus        97 ~~~~~~~mHdlv~d~a~~i~~~~  119 (831)
                      +....|+|||+||++|+..+.++
T Consensus       430 ~~~~~~~~h~l~~~~~~~~~~~~  452 (1249)
T 3sfz_A          430 GKSFCYYLHDLQVDFLTEKNRSQ  452 (1249)
T ss_dssp             SSSEEEECCHHHHHHHHHHTGGG
T ss_pred             CCceEEEecHHHHHHHHhhhhHH
Confidence            23346999999999999987765

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.89  E-value=2.8e-09  Score=98.41  Aligned_cols=96  Identities=26%  Similarity=0.392  Sum_probs=81.5

Q ss_pred             eEEEEeCCCCccccCccccCCCCCceeecCCCCCCcc-chhhhccCCccEEeecCcCcccccccc-ccCcccccccccCC
Q 038658          194 LRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTL-PESVNKLYNLHTLSLEGCRGLRKLCAG-MGNLIKLHHLNNSN  271 (831)
Q Consensus       194 L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~l~~  271 (831)
                      .++++++++.++.+|..+.  .+|++|+|++|.|+.+ |..+.++++|++|++++|. +..+|.. +..+++|++|++++
T Consensus        11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCC
Confidence            4689999999999998774  8999999999999988 5678999999999999986 5566554 68999999999999


Q ss_pred             CCCcccccCC-CCCccccccccc
Q 038658          272 TDSLEEMPLG-IGKLTCLQTLCN  293 (831)
Q Consensus       272 ~~~~~~~p~~-~~~L~~L~~L~~  293 (831)
                      |. +..+|.+ ++.+++|+.|..
T Consensus        88 N~-l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           88 NQ-LKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             SC-CCCCCTTTTTTCTTCCEEEC
T ss_pred             Cc-cCEeCHHHhcCCCCCCEEEe
Confidence            98 6666654 889999998843

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.81  E-value=6.6e-08  Score=100.28  Aligned_cols=36  Identities=11%  Similarity=0.063  Sum_probs=20.6

Q ss_pred             CCcccEEEEcccc-Ccc-ccCCCCCccceEEEcCCCCc
Q 038658          494 LPALEMLVIGGCE-ELL-VSITSLPALSKLEIGGCKKV  529 (831)
Q Consensus       494 l~~L~~L~l~~~~-~l~-~~~~~l~~L~~L~l~~~~~~  529 (831)
                      +++|+.+.+.+.- .+. ..|..+++|+.+++.++...
T Consensus       100 ~~~L~~l~L~~~i~~I~~~aF~~~~~L~~l~l~~n~i~  137 (329)
T 3sb4_A          100 KQTLEKVILSEKIKNIEDAAFKGCDNLKICQIRKKTAP  137 (329)
T ss_dssp             CTTCCC-CBCTTCCEECTTTTTTCTTCCEEEBCCSSCC
T ss_pred             cCCCcEEECCccccchhHHHhhcCcccceEEcCCCCcc
Confidence            6677777776611 111 34556777777777766533

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.70  E-value=2.2e-06  Score=91.28  Aligned_cols=64  Identities=8%  Similarity=0.166  Sum_probs=36.8

Q ss_pred             cccc-CccccCCCCCceeecCCCCCCccc-hhhhccCCccEEeecCcCccccccc-cccCcccccccccC
Q 038658          204 ISEL-PDSIGDLRYLRYLNLSGTQIRTLP-ESVNKLYNLHTLSLEGCRGLRKLCA-GMGNLIKLHHLNNS  270 (831)
Q Consensus       204 i~~l-p~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~l~  270 (831)
                      ++++ ..+|.++.+|+.+.+..+ ++.++ .++.++.+|+.+++..+  +..++. .+.++.+|+.+.+.
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p  125 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLP  125 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCC
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhccc
Confidence            3444 345667777777777543 66664 35667777777777542  333332 35566666655544

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=98.66  E-value=1.7e-08  Score=114.29  Aligned_cols=88  Identities=18%  Similarity=0.263  Sum_probs=75.7

Q ss_pred             CCchHHHHhccccCChhhhhHhhhhCCCCCCCccCHHHHHHHHHHcCCcCCCCCCCchHHHHHHHHHHHHhcccceeec-
Q 038658           18 CDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWSAVGFLDHRKSENPCEDLGRKFFQELRARSFFQQSS-   96 (831)
Q Consensus        18 ~~i~~~L~lSY~~L~~~~k~cfl~~~~fp~~~~i~~~~Li~~wi~~G~i~~~~~~~~~~~~~~~~~~~Lv~~~ll~~~~-   96 (831)
                      ..+..+++.||+.||.+.|.||++||+||+|+.|+.+.++..|.++            .+.+..++++|++++|++... 
T Consensus       362 ~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~~~~~~l~~L~~~~Ll~~~~~  429 (591)
T 1z6t_A          362 EALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------TEEVEDILQEFVNKSLLFCDRN  429 (591)
T ss_dssp             HHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSSEEEEE
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC------------HHHHHHHHHHHHhCcCeEEecC
Confidence            4688999999999999999999999999999999999999999533            234788999999999998653 


Q ss_pred             CCcccEeecHHHHHHHHHHhc
Q 038658           97 NNKSLFVMHDLINDLAHWAAG  117 (831)
Q Consensus        97 ~~~~~~~mHdlv~d~a~~i~~  117 (831)
                      +....|.|||+||+++...+.
T Consensus       430 ~~~~~~~~H~lv~~~~~~~~~  450 (591)
T 1z6t_A          430 GKSFRYYLHDLQVDFLTEKNC  450 (591)
T ss_dssp             TTEEEEECCHHHHHHHHHHTG
T ss_pred             CCccEEEEcHHHHHHHHhhhh
Confidence            344579999999999987743

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.66  E-value=4e-08  Score=102.96  Aligned_cols=88  Identities=18%  Similarity=0.133  Sum_probs=49.5

Q ss_pred             ccccccCCcceEEEEeCC-CCccccC-ccccCCCCCceeecCCCCCCccch-hhhccCCccEEeecCcCccccccccccC
Q 038658          184 ILPKLFKLQRLRVFSLCG-YWISELP-DSIGDLRYLRYLNLSGTQIRTLPE-SVNKLYNLHTLSLEGCRGLRKLCAGMGN  260 (831)
Q Consensus       184 ~~~~~~~l~~L~~L~L~~-~~i~~lp-~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~i~~  260 (831)
                      +|. +..+++|++|+|++ |.++.+| ..|+.+.+|++|+|++|+|+.+|+ .|.+|++|++|+|++|. +..+|..+..
T Consensus        24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~  101 (347)
T 2ifg_A           24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTVQ  101 (347)
T ss_dssp             TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-CSCCCSTTTC
T ss_pred             cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc-cceeCHHHcc
Confidence            444 44566666666664 6666554 455666666666666666665543 45666666666666654 3344443322


Q ss_pred             cccccccccCCCC
Q 038658          261 LIKLHHLNNSNTD  273 (831)
Q Consensus       261 L~~L~~L~l~~~~  273 (831)
                      ..+|+.|++.+|.
T Consensus       102 ~~~L~~l~l~~N~  114 (347)
T 2ifg_A          102 GLSLQELVLSGNP  114 (347)
T ss_dssp             SCCCCEEECCSSC
T ss_pred             cCCceEEEeeCCC
Confidence            2226666666654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.62  E-value=3.8e-07  Score=96.54  Aligned_cols=233  Identities=13%  Similarity=0.120  Sum_probs=112.6

Q ss_pred             ceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCCccc-hhhhccCCccEEeecCcCccccccccccCcccccccccC
Q 038658          193 RLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTLP-ESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNS  270 (831)
Q Consensus       193 ~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~  270 (831)
                      +|+.+.+..+ ++.+ ..+|.+. +|+.+.+.. .++.++ .++.++.+|+.+++.+|. +..+|...-...+|+.+.+.
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp  211 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLP  211 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECC
T ss_pred             CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCc-ceEechhhEeecccCEEEeC
Confidence            5666666554 5555 3455553 566666664 455554 456666777777776543 45555443334666666665


Q ss_pred             CCCCcccccCC-CCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCCh
Q 038658          271 NTDSLEEMPLG-IGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSL  349 (831)
Q Consensus       271 ~~~~~~~~p~~-~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~  349 (831)
                      .+  +..++.. |..+++|+.+..-                      -.+..+....|.+ .+|+.+.+.. ....    
T Consensus       212 ~~--l~~I~~~aF~~~~~L~~l~l~----------------------~~l~~I~~~aF~~-~~L~~i~lp~-~i~~----  261 (401)
T 4fdw_A          212 VT--LKEIGSQAFLKTSQLKTIEIP----------------------ENVSTIGQEAFRE-SGITTVKLPN-GVTN----  261 (401)
T ss_dssp             TT--CCEECTTTTTTCTTCCCEECC----------------------TTCCEECTTTTTT-CCCSEEEEET-TCCE----
T ss_pred             Cc--hheehhhHhhCCCCCCEEecC----------------------CCccCcccccccc-CCccEEEeCC-CccE----
Confidence            43  4444433 5666666655110                      0011222233333 3444444411 1100    


Q ss_pred             hhhhhHHhhhcCCCCCCCccEEEEeeecCC-----CCCccCCCCCCCceeEEEEecCCCCCCCC--CCCCCCCcceEEec
Q 038658          350 REAETQKGVLDMLKPHKNLEQFFISGYGGT-----KFPIWLGDSSFSNLVTLKFEDCGMCTTLP--SVGQLPSLKHLAVR  422 (831)
Q Consensus       350 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-----~~p~~~~~~~~~~L~~L~l~~~~~~~~~~--~l~~l~~L~~L~L~  422 (831)
                             .....+..+++|+.+.+.++...     .++..... .+++|+.+.+.++  ...++  .+.++++|+.+.|.
T Consensus       262 -------I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~-~c~~L~~l~l~~~--i~~I~~~aF~~c~~L~~l~lp  331 (401)
T 4fdw_A          262 -------IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE-GCPKLARFEIPES--IRILGQGLLGGNRKVTQLTIP  331 (401)
T ss_dssp             -------ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTT-TCTTCCEECCCTT--CCEECTTTTTTCCSCCEEEEC
T ss_pred             -------EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhh-CCccCCeEEeCCc--eEEEhhhhhcCCCCccEEEEC
Confidence                   01123444455555555544332     23322222 2566666666632  22232  56667777777774


Q ss_pred             cccCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCC-cccEEeEcC
Q 038658          423 RMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFP-KLRELEVIG  482 (831)
Q Consensus       423 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~-~L~~L~l~~  482 (831)
                      .  .++.++...+..     + +|+.+.+.+.. ..... .   ..+.+++ .++.|.+-.
T Consensus       332 ~--~l~~I~~~aF~~-----~-~L~~l~l~~n~-~~~l~-~---~~F~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          332 A--NVTQINFSAFNN-----T-GIKEVKVEGTT-PPQVF-E---KVWYGFPDDITVIRVPA  379 (401)
T ss_dssp             T--TCCEECTTSSSS-----S-CCCEEEECCSS-CCBCC-C---SSCCCSCTTCCEEEECG
T ss_pred             c--cccEEcHHhCCC-----C-CCCEEEEcCCC-Ccccc-c---ccccCCCCCccEEEeCH
Confidence            3  355554443332     4 67777766531 11111 1   1133443 567777754

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.60  E-value=1.1e-06  Score=92.97  Aligned_cols=256  Identities=11%  Similarity=0.136  Sum_probs=167.5

Q ss_pred             CcceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCCccch-hhhccCCccEEeecCcCcccccc-ccccCccccccc
Q 038658          191 LQRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTLPE-SVNKLYNLHTLSLEGCRGLRKLC-AGMGNLIKLHHL  267 (831)
Q Consensus       191 l~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L  267 (831)
                      +..++.+.+.. .++.+ ..+|.+. +|+.+.+..+ ++.++. ++.+ .+|+.+.+..  .+..++ ..|.++.+|+.+
T Consensus       112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l  185 (401)
T 4fdw_A          112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNLKKA  185 (401)
T ss_dssp             CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTCCEE
T ss_pred             cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccCCee
Confidence            45666666654 36666 4567765 7999999876 888864 5666 4799999986  355554 458999999999


Q ss_pred             ccCCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCC
Q 038658          268 NNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGS  347 (831)
Q Consensus       268 ~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~  347 (831)
                      ++.+|. +..+|.+.-..++|+.+.                    +  ...+..+....|.++.+|+.+.+..+ ...  
T Consensus       186 ~l~~n~-l~~I~~~aF~~~~L~~l~--------------------l--p~~l~~I~~~aF~~~~~L~~l~l~~~-l~~--  239 (401)
T 4fdw_A          186 DLSKTK-ITKLPASTFVYAGIEEVL--------------------L--PVTLKEIGSQAFLKTSQLKTIEIPEN-VST--  239 (401)
T ss_dssp             ECTTSC-CSEECTTTTTTCCCSEEE--------------------C--CTTCCEECTTTTTTCTTCCCEECCTT-CCE--
T ss_pred             ecCCCc-ceEechhhEeecccCEEE--------------------e--CCchheehhhHhhCCCCCCEEecCCC-ccC--
Confidence            999887 777776633356666661                    1  11244556678889999999988432 100  


Q ss_pred             ChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCC----CCCC--CCCCCCCcceEEe
Q 038658          348 SLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMC----TTLP--SVGQLPSLKHLAV  421 (831)
Q Consensus       348 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~----~~~~--~l~~l~~L~~L~L  421 (831)
                               .....+.. .+|+.+.+. +....++..... .+++|+.+.+.++...    ..++  .+.++++|+.+.+
T Consensus       240 ---------I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~-~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l  307 (401)
T 4fdw_A          240 ---------IGQEAFRE-SGITTVKLP-NGVTNIASRAFY-YCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEI  307 (401)
T ss_dssp             ---------ECTTTTTT-CCCSEEEEE-TTCCEECTTTTT-TCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECC
T ss_pred             ---------cccccccc-CCccEEEeC-CCccEEChhHhh-CCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEe
Confidence                     01123444 689999984 445555544433 3789999999887654    1233  6889999999999


Q ss_pred             ccccCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCCC----CC-Cc
Q 038658          422 RRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPE----HL-PA  496 (831)
Q Consensus       422 ~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~----~l-~~  496 (831)
                      .+  .++.++...+..     +++|+.+.+..  ++..+-.    ..+..+ +|+.+.+.++ .+. .++.    .+ .+
T Consensus       308 ~~--~i~~I~~~aF~~-----c~~L~~l~lp~--~l~~I~~----~aF~~~-~L~~l~l~~n-~~~-~l~~~~F~~~~~~  371 (401)
T 4fdw_A          308 PE--SIRILGQGLLGG-----NRKVTQLTIPA--NVTQINF----SAFNNT-GIKEVKVEGT-TPP-QVFEKVWYGFPDD  371 (401)
T ss_dssp             CT--TCCEECTTTTTT-----CCSCCEEEECT--TCCEECT----TSSSSS-CCCEEEECCS-SCC-BCCCSSCCCSCTT
T ss_pred             CC--ceEEEhhhhhcC-----CCCccEEEECc--cccEEcH----HhCCCC-CCCEEEEcCC-CCc-ccccccccCCCCC
Confidence            73  577776555433     78888888854  2322221    226667 9999999884 444 3332    23 36


Q ss_pred             ccEEEEcccc
Q 038658          497 LEMLVIGGCE  506 (831)
Q Consensus       497 L~~L~l~~~~  506 (831)
                      ++.|.+-...
T Consensus       372 l~~l~vp~~~  381 (401)
T 4fdw_A          372 ITVIRVPAES  381 (401)
T ss_dssp             CCEEEECGGG
T ss_pred             ccEEEeCHHH
Confidence            7788776543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.54  E-value=1.1e-07  Score=99.70  Aligned_cols=94  Identities=18%  Similarity=0.138  Sum_probs=77.9

Q ss_pred             EEEeCCC-CccccCccccCCCCCceeecCC-CCCCccc-hhhhccCCccEEeecCcCccccccccccCcccccccccCCC
Q 038658          196 VFSLCGY-WISELPDSIGDLRYLRYLNLSG-TQIRTLP-ESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNT  272 (831)
Q Consensus       196 ~L~L~~~-~i~~lp~~~~~l~~Lr~L~L~~-~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~  272 (831)
                      .++++++ .++.+|. |+.+.+|++|+|++ |.|+.+| ..+++|.+|++|+|++|......|..|++|++|++|+|++|
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            4588888 8999999 99999999999996 9999887 57899999999999998755555667899999999999999


Q ss_pred             CCcccccCC-CCCcccccccc
Q 038658          273 DSLEEMPLG-IGKLTCLQTLC  292 (831)
Q Consensus       273 ~~~~~~p~~-~~~L~~L~~L~  292 (831)
                      . +..+|.+ +..+. |+.|.
T Consensus        91 ~-l~~~~~~~~~~~~-L~~l~  109 (347)
T 2ifg_A           91 A-LESLSWKTVQGLS-LQELV  109 (347)
T ss_dssp             C-CSCCCSTTTCSCC-CCEEE
T ss_pred             c-cceeCHHHcccCC-ceEEE
Confidence            8 6677766 44444 77774

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.44  E-value=1.4e-05  Score=84.88  Aligned_cols=62  Identities=13%  Similarity=0.208  Sum_probs=46.4

Q ss_pred             cccccc-CCcceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCCccc-hhhhccCCccEEeecC
Q 038658          184 ILPKLF-KLQRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTLP-ESVNKLYNLHTLSLEG  247 (831)
Q Consensus       184 ~~~~~~-~l~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~  247 (831)
                      +....| ++.+|+.+.+..+ ++.+ ..+|.++.+|+.+++..+ ++.++ .++.++.+|+.+.+..
T Consensus        62 Ig~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~  126 (394)
T 4fs7_A           62 IGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPL  126 (394)
T ss_dssp             ECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             hHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccC
Confidence            444444 8889999998743 7777 467889999999999765 67775 4678888888776654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.34  E-value=3e-07  Score=83.03  Aligned_cols=38  Identities=5%  Similarity=0.228  Sum_probs=19.6

Q ss_pred             CCcCeEEEccCCCcceec--cCCCCCCCceEEEecCCCCCc
Q 038658          697 LSLEILTISRCHSLTYIA--EVQLPPSLKNVVIRNCDNVRT  735 (831)
Q Consensus       697 ~~L~~L~l~~c~~l~~l~--~~~~~~~L~~L~l~~c~~l~~  735 (831)
                      .+|++|++++|. ++...  ....+++|++|++++|..++.
T Consensus        61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD  100 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIED  100 (176)
T ss_dssp             CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCH
T ss_pred             ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCH
Confidence            356666666664 43311  112345666666666665553

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.25  E-value=6e-08  Score=101.68  Aligned_cols=82  Identities=20%  Similarity=0.250  Sum_probs=39.0

Q ss_pred             cceEEEEeCCCCcccc-Ccc----cc-CCCCCceeecCCCCCCc--cchhhhccCCccEEeecCcCccccccccc-----
Q 038658          192 QRLRVFSLCGYWISEL-PDS----IG-DLRYLRYLNLSGTQIRT--LPESVNKLYNLHTLSLEGCRGLRKLCAGM-----  258 (831)
Q Consensus       192 ~~L~~L~L~~~~i~~l-p~~----~~-~l~~Lr~L~L~~~~i~~--lp~~i~~L~~L~~L~l~~~~~~~~lp~~i-----  258 (831)
                      +.|++|+|++|.++.. ...    +. ...+|++|+|++|.+..  +..-...+.+|++|+|++|.....-...+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            4456666666665432 111    11 22466666666666542  11222344566666666654322211112     


Q ss_pred             cCcccccccccCCCC
Q 038658          259 GNLIKLHHLNNSNTD  273 (831)
Q Consensus       259 ~~L~~L~~L~l~~~~  273 (831)
                      ...++|++|++++|.
T Consensus       152 ~~~~~L~~L~Ls~n~  166 (372)
T 3un9_A          152 HDQCQITTLRLSNNP  166 (372)
T ss_dssp             STTCCCCEEECCSSC
T ss_pred             hcCCccceeeCCCCC
Confidence            123556666666665

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.21  E-value=7.8e-07  Score=80.30  Aligned_cols=85  Identities=13%  Similarity=0.090  Sum_probs=39.7

Q ss_pred             CccEEEeccCCCCcccccccCCCCCCCeEEEecCCCCccccCCCC------CCCccEEEEecCCCCccccc-ccccCCCC
Q 038658          625 RLEYLLLNDCKGLVKLPQSLLSLSSLREIEIYNCSSFVSFPEVAL------PSKVRSISIHRCDALKSLPE-AWMCDANL  697 (831)
Q Consensus       625 ~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~l~~~~~------~~~L~~L~l~~c~~l~~l~~-~~~~~~l~  697 (831)
                      +|+.|++++|.....--..+..+++|++|+|++|..+++-.-..+      .++|++|++++|..+++-.- .+..  ++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~--~~  139 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH--FR  139 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG--CT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc--CC
Confidence            466666666653322223345566666666666665543211000      12455555555555444221 1111  44


Q ss_pred             CcCeEEEccCCCcc
Q 038658          698 SLEILTISRCHSLT  711 (831)
Q Consensus       698 ~L~~L~l~~c~~l~  711 (831)
                      +|++|++++|+.++
T Consensus       140 ~L~~L~L~~c~~It  153 (176)
T 3e4g_A          140 NLKYLFLSDLPGVK  153 (176)
T ss_dssp             TCCEEEEESCTTCC
T ss_pred             CCCEEECCCCCCCC
Confidence            44444444444443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.02  E-value=8.1e-06  Score=84.61  Aligned_cols=88  Identities=17%  Similarity=0.155  Sum_probs=45.4

Q ss_pred             cccCCCCCCCeEEEecCCCCccccCCCCCCCccEEEEecCCCCcccccccccCCCCCcCeEEEccCC-------Ccceec
Q 038658          642 QSLLSLSSLREIEIYNCSSFVSFPEVALPSKVRSISIHRCDALKSLPEAWMCDANLSLEILTISRCH-------SLTYIA  714 (831)
Q Consensus       642 ~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~-------~l~~l~  714 (831)
                      ..+..+++|+.|+|++|..+ .++.. ..++|++|++..|..-......+....+|+|+.|+++.+.       .++.+.
T Consensus       166 ~ll~~~P~L~~L~L~g~~~l-~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~  243 (362)
T 2ra8_A          166 PVLDAMPLLNNLKIKGTNNL-SIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR  243 (362)
T ss_dssp             HHHHTCTTCCEEEEECCBTC-BCCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred             HHHhcCCCCcEEEEeCCCCc-eeccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence            34455677777777776333 23321 2667777777765532222222221237777777775321       121111


Q ss_pred             ---cCCCCCCCceEEEecCC
Q 038658          715 ---EVQLPPSLKNVVIRNCD  731 (831)
Q Consensus       715 ---~~~~~~~L~~L~l~~c~  731 (831)
                         ....+|+|+.|.+.+|.
T Consensus       244 ~~l~~~~~p~Lr~L~L~~~~  263 (362)
T 2ra8_A          244 PLFSKDRFPNLKWLGIVDAE  263 (362)
T ss_dssp             GGSCTTTCTTCCEEEEESCT
T ss_pred             HHHhcCCCCCcCEEeCCCCC
Confidence               11234677777777764

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.97  E-value=1.7e-06  Score=90.52  Aligned_cols=84  Identities=20%  Similarity=0.108  Sum_probs=42.0

Q ss_pred             CCcceEEEEeCCCCcccc-Ccc----c-cCCCCCceeecCCCCCCc-----cchhhhccCCccEEeecCcCccc----cc
Q 038658          190 KLQRLRVFSLCGYWISEL-PDS----I-GDLRYLRYLNLSGTQIRT-----LPESVNKLYNLHTLSLEGCRGLR----KL  254 (831)
Q Consensus       190 ~l~~L~~L~L~~~~i~~l-p~~----~-~~l~~Lr~L~L~~~~i~~-----lp~~i~~L~~L~~L~l~~~~~~~----~l  254 (831)
                      .+++|++|+|++|.++.. ...    + ....+|++|+|++|.|+.     ++..+..+++|++|+|++|....    .+
T Consensus       124 ~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L  203 (372)
T 3un9_A          124 VFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELL  203 (372)
T ss_dssp             HHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHH
T ss_pred             HHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHH
Confidence            344566666666655422 111    1 234556666666665542     33444555566666666654221    12


Q ss_pred             cccccCcccccccccCCCC
Q 038658          255 CAGMGNLIKLHHLNNSNTD  273 (831)
Q Consensus       255 p~~i~~L~~L~~L~l~~~~  273 (831)
                      +..+...++|++|++++|.
T Consensus       204 ~~~L~~~~~L~~L~Ls~N~  222 (372)
T 3un9_A          204 AAQLDRNRQLQELNVAYNG  222 (372)
T ss_dssp             HHHGGGCSCCCEEECCSSC
T ss_pred             HHHHhcCCCcCeEECCCCC
Confidence            3344455556666666655

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.93  E-value=0.0005  Score=72.84  Aligned_cols=63  Identities=17%  Similarity=0.269  Sum_probs=29.7

Q ss_pred             CcccccCCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEeccCCCCcccc-cccCCCCCCCeEEEecC
Q 038658          585 NGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLP-QSLLSLSSLREIEIYNC  658 (831)
Q Consensus       585 ~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~L~L~~~  658 (831)
                      ...+.++.+|+++.+..  +++.+....|..-       .+|+.+.+..+  ++.+. ..|.+|++|+.+++.++
T Consensus       304 ~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C-------~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          304 ESVFAGCISLKSIDIPE--GITQILDDAFAGC-------EQLERIAIPSS--VTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             TTTTTTCTTCCEEECCT--TCCEECTTTTTTC-------TTCCEEEECTT--CCBCCGGGGTTCTTCCEEEESSC
T ss_pred             ceeecCCCCcCEEEeCC--cccEehHhHhhCC-------CCCCEEEECcc--cCEEhHhHhhCCCCCCEEEECCc
Confidence            33444555555555532  3444433333222       34555555432  23332 34666666666666654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.89  E-value=8.5e-06  Score=79.71  Aligned_cols=62  Identities=27%  Similarity=0.323  Sum_probs=28.4

Q ss_pred             CCCCCceeecCCCCCCcc---chhhhccCCccEEeecCcCccccccccccCcc--cccccccCCCCCcc
Q 038658          213 DLRYLRYLNLSGTQIRTL---PESVNKLYNLHTLSLEGCRGLRKLCAGMGNLI--KLHHLNNSNTDSLE  276 (831)
Q Consensus       213 ~l~~Lr~L~L~~~~i~~l---p~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~--~L~~L~l~~~~~~~  276 (831)
                      ++++|++|+|++|.|+.+   |..+..+++|++|+|++|. +..+ ..+..+.  +|++|++++|...+
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDGNSLCD  234 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEEECTTSTTGG
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceEEccCCcCcc
Confidence            345555555555555433   2334455555555555543 2222 1233333  55555555555333

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.85  E-value=0.00042  Score=73.41  Aligned_cols=105  Identities=10%  Similarity=0.117  Sum_probs=64.7

Q ss_pred             ccccCC-cceEEccccccCCCccccccccccccc-CCcceEEEEeCCCC---cccc-CccccCCCCCceeecCCCCCCcc
Q 038658          157 DLYNIQ-HLRTFLPVCLSNSSQGFLAHSILPKLF-KLQRLRVFSLCGYW---ISEL-PDSIGDLRYLRYLNLSGTQIRTL  230 (831)
Q Consensus       157 ~~~~~~-~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~---i~~l-p~~~~~l~~Lr~L~L~~~~i~~l  230 (831)
                      +|.+++ .|+.+.+...        ...+....| ++.+|+.+.+..+.   ++.+ ..+|..+..|+.+.+..+ ++.+
T Consensus        58 aF~~~~~~L~sI~iP~s--------vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I  128 (394)
T 4gt6_A           58 VFCNYKYVLTSVQIPDT--------VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI  128 (394)
T ss_dssp             TTTTCCSCCCEEEECTT--------CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred             hccCCCCcCEEEEECCC--------eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence            455553 4666644221        123334444 78888888887653   5566 456777888888777654 5555


Q ss_pred             c-hhhhccCCccEEeecCcCcccccc-ccccCcccccccccCCC
Q 038658          231 P-ESVNKLYNLHTLSLEGCRGLRKLC-AGMGNLIKLHHLNNSNT  272 (831)
Q Consensus       231 p-~~i~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~l~~~  272 (831)
                      + ..+..+.+|+.+.+...  ...++ ..+....+|+.+.+..+
T Consensus       129 ~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~  170 (394)
T 4gt6_A          129 DSEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS  170 (394)
T ss_dssp             CTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT
T ss_pred             hhhhhhhhcccccccccce--eeeecccceecccccccccccce
Confidence            4 45677888888888652  33333 33667777777777654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.81  E-value=2e-05  Score=81.69  Aligned_cols=128  Identities=12%  Similarity=0.133  Sum_probs=62.0

Q ss_pred             CccEEEeccCCCCcccccccCCCCCCCeEEEecCCCCcccc--C--CCCCCCccEEEEecCC-------CCccccccccc
Q 038658          625 RLEYLLLNDCKGLVKLPQSLLSLSSLREIEIYNCSSFVSFP--E--VALPSKVRSISIHRCD-------ALKSLPEAWMC  693 (831)
Q Consensus       625 ~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~l~--~--~~~~~~L~~L~l~~c~-------~l~~l~~~~~~  693 (831)
                      +|+.|.|++|.... ++. + .+++|++|+|..|. +..-.  .  ...+|+|++|+++.+.       .++.+...+..
T Consensus       173 ~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~-l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~  248 (362)
T 2ra8_A          173 LLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGG-LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK  248 (362)
T ss_dssp             TCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSB-CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT
T ss_pred             CCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCC-CChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhc
Confidence            56666665553221 222 2 25566666666552 22110  0  0125666666664211       12222222222


Q ss_pred             CCCCCcCeEEEccCCCcc----eeccCCCCCCCceEEEecCCCCCccc---cccCccCCcccccCccccceEEEecCC
Q 038658          694 DANLSLEILTISRCHSLT----YIAEVQLPPSLKNVVIRNCDNVRTLT---VEEGIQSSSSRRYTSSLLEHLHIESCP  764 (831)
Q Consensus       694 ~~l~~L~~L~l~~c~~l~----~l~~~~~~~~L~~L~l~~c~~l~~l~---~~~~~~~~~~~~l~~~~L~~L~i~~c~  764 (831)
                      ..+|+|+.|++.+|..-.    .+......++|++|+++. +.++...   .+.++.+     ++.  |++|++++|.
T Consensus       249 ~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~-----l~~--L~~L~L~~n~  318 (362)
T 2ra8_A          249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDK-----IKH--LKFINMKYNY  318 (362)
T ss_dssp             TTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHH-----HTT--CSEEECCSBB
T ss_pred             CCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhccc-----CCc--ceEEECCCCc
Confidence            236777777777764321    111123346788888854 4565421   0333333     556  8888887763

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.70  E-value=6.7e-06  Score=80.44  Aligned_cols=79  Identities=22%  Similarity=0.296  Sum_probs=63.5

Q ss_pred             CCcceEEEEeCCCCcccc---CccccCCCCCceeecCCCCCCccchhhhccC--CccEEeecCcCccccccc-------c
Q 038658          190 KLQRLRVFSLCGYWISEL---PDSIGDLRYLRYLNLSGTQIRTLPESVNKLY--NLHTLSLEGCRGLRKLCA-------G  257 (831)
Q Consensus       190 ~l~~L~~L~L~~~~i~~l---p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~--~L~~L~l~~~~~~~~lp~-------~  257 (831)
                      .+++|++|+|++|.++.+   |..+..+++|++|+|++|.|..+ ..+..+.  +|++|+|++|.....+|.       .
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            688999999999998865   45667899999999999999977 4455555  999999999986655542       3


Q ss_pred             ccCccccccccc
Q 038658          258 MGNLIKLHHLNN  269 (831)
Q Consensus       258 i~~L~~L~~L~l  269 (831)
                      +..+++|+.||-
T Consensus       247 l~~~P~L~~LDg  258 (267)
T 3rw6_A          247 RERFPKLLRLDG  258 (267)
T ss_dssp             HHHCTTCCEESS
T ss_pred             HHHCcccCeECC
Confidence            667888888763

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.52  E-value=3.8e-05  Score=71.41  Aligned_cols=84  Identities=17%  Similarity=0.152  Sum_probs=44.6

Q ss_pred             CCcceEEEEeCCCCccc-----cCccccCCCCCceeecCCCCCCc-----cchhhhccCCccEEee--cCcCcccc----
Q 038658          190 KLQRLRVFSLCGYWISE-----LPDSIGDLRYLRYLNLSGTQIRT-----LPESVNKLYNLHTLSL--EGCRGLRK----  253 (831)
Q Consensus       190 ~l~~L~~L~L~~~~i~~-----lp~~~~~l~~Lr~L~L~~~~i~~-----lp~~i~~L~~L~~L~l--~~~~~~~~----  253 (831)
                      ..+.|++|+|++|.+..     +...+...+.|++|+|++|.|..     +...+...+.|++|++  ++|.....    
T Consensus        63 ~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~  142 (185)
T 1io0_A           63 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME  142 (185)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred             hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHH
Confidence            45566666666666542     23334444566666666666652     3445555566666666  44442211    


Q ss_pred             ccccccCcccccccccCCCC
Q 038658          254 LCAGMGNLIKLHHLNNSNTD  273 (831)
Q Consensus       254 lp~~i~~L~~L~~L~l~~~~  273 (831)
                      +...+...++|++|++++|.
T Consensus       143 l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          143 IANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHhCCCcCEEeccCCC
Confidence            22334444566666666654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.48  E-value=2.8e-05  Score=72.32  Aligned_cols=105  Identities=16%  Similarity=0.119  Sum_probs=77.8

Q ss_pred             cccCCcceEEEEeCCC-Ccc-----ccCccccCCCCCceeecCCCCCCc-----cchhhhccCCccEEeecCcCcccc--
Q 038658          187 KLFKLQRLRVFSLCGY-WIS-----ELPDSIGDLRYLRYLNLSGTQIRT-----LPESVNKLYNLHTLSLEGCRGLRK--  253 (831)
Q Consensus       187 ~~~~l~~L~~L~L~~~-~i~-----~lp~~~~~l~~Lr~L~L~~~~i~~-----lp~~i~~L~~L~~L~l~~~~~~~~--  253 (831)
                      .+...+.|++|+|++| .+.     .+...+...++|++|+|++|.|..     +...+...++|++|+|++|.....  
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            3447889999999999 775     345667788999999999999873     456677789999999999864332  


Q ss_pred             --ccccccCccccccccc--CCCCCccc----ccCCCCCccccccc
Q 038658          254 --LCAGMGNLIKLHHLNN--SNTDSLEE----MPLGIGKLTCLQTL  291 (831)
Q Consensus       254 --lp~~i~~L~~L~~L~l--~~~~~~~~----~p~~~~~L~~L~~L  291 (831)
                        +...+...++|++|++  ++|.+...    +...+...++|++|
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L  156 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKF  156 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEE
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEE
Confidence              4566778889999999  77873322    22334445666666

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.21  E-value=0.064  Score=56.13  Aligned_cols=58  Identities=17%  Similarity=0.336  Sum_probs=26.1

Q ss_pred             ccCCCCCCCeEEEecCCCCccccCCCC--CCCccEEEEecCCCCccccc-ccccCCCCCcCeEEEc
Q 038658          643 SLLSLSSLREIEIYNCSSFVSFPEVAL--PSKVRSISIHRCDALKSLPE-AWMCDANLSLEILTIS  705 (831)
Q Consensus       643 ~l~~l~~L~~L~L~~~~~l~~l~~~~~--~~~L~~L~l~~c~~l~~l~~-~~~~~~l~~L~~L~l~  705 (831)
                      .+.++.+|+.+.+..  .++.++...+  +.+|+.+.+.+ ..++.++. .+..  +.+|+.+.+.
T Consensus       258 aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~aF~~--c~~L~~i~lp  318 (379)
T 4h09_A          258 LLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDN-SAIETLEPRVFMD--CVKLSSVTLP  318 (379)
T ss_dssp             TTTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECC-TTCCEECTTTTTT--CTTCCEEECC
T ss_pred             ccceeehhccccccc--cceeccccccccccccccccccc-cccceehhhhhcC--CCCCCEEEcC
Confidence            344455555555543  2444444433  45555555543 22333332 2222  4555555553

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.20  E-value=0.022  Score=59.75  Aligned_cols=77  Identities=8%  Similarity=0.109  Sum_probs=36.2

Q ss_pred             CCcceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCCccch-hhhccCCccEEeecCcCccccccccccCccccccc
Q 038658          190 KLQRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTLPE-SVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHL  267 (831)
Q Consensus       190 ~l~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L  267 (831)
                      ...+|+.+.+.. .++.+ ..+|.++.+|+.+++..+ ++.++. ++.+. +|+.+.+..+  +..++...-.-.+|+.+
T Consensus        44 ~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~~~L~~i  118 (379)
T 4h09_A           44 DRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQGTDLDDF  118 (379)
T ss_dssp             GGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT--CCEECTTTTTTCCCSEE
T ss_pred             cccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce--eeEeccceeccCCcccc
Confidence            334455555442 24444 345666666666666543 555542 44444 4555555431  33333332222355555


Q ss_pred             ccCC
Q 038658          268 NNSN  271 (831)
Q Consensus       268 ~l~~  271 (831)
                      .+..
T Consensus       119 ~lp~  122 (379)
T 4h09_A          119 EFPG  122 (379)
T ss_dssp             ECCT
T ss_pred             cCCC
Confidence            5543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.28  E-value=0.0057  Score=52.45  Aligned_cols=52  Identities=21%  Similarity=0.245  Sum_probs=42.7

Q ss_pred             EEEeCCCCcc--ccCccccCCCCCceeecCCCCCCccch-hhhccCCccEEeecCcC
Q 038658          196 VFSLCGYWIS--ELPDSIGDLRYLRYLNLSGTQIRTLPE-SVNKLYNLHTLSLEGCR  249 (831)
Q Consensus       196 ~L~L~~~~i~--~lp~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~  249 (831)
                      +++.+++.++  .+|..+.  .+|++|+|++|+|+.+|. .+..+.+|++|+|++|.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            6788888888  8887654  568999999999999975 46888899999999875

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=93.32  E-value=0.06  Score=49.40  Aligned_cols=83  Identities=16%  Similarity=0.131  Sum_probs=50.0

Q ss_pred             CCcceEEEEeCCC-Ccc-----ccCccccCCCCCceeecCCCCCC-----ccchhhhccCCccEEeecCcCcccc----c
Q 038658          190 KLQRLRVFSLCGY-WIS-----ELPDSIGDLRYLRYLNLSGTQIR-----TLPESVNKLYNLHTLSLEGCRGLRK----L  254 (831)
Q Consensus       190 ~l~~L~~L~L~~~-~i~-----~lp~~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~~~~----l  254 (831)
                      .-+.|+.|+|+++ .|.     .+-+.+..-+.|+.|+|++|.|.     .+-+.+..-+.|++|+|++|.....    +
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            4456777777764 554     23455566677777777777776     3345555667777777777653221    2


Q ss_pred             cccccCcccccccccCCC
Q 038658          255 CAGMGNLIKLHHLNNSNT  272 (831)
Q Consensus       255 p~~i~~L~~L~~L~l~~~  272 (831)
                      -+.+..-+.|++|+++++
T Consensus       119 a~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHTTTTCCCSEEECCCC
T ss_pred             HHHHhhCCceeEEECCCC
Confidence            233444455777777654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=93.28  E-value=0.077  Score=45.28  Aligned_cols=53  Identities=19%  Similarity=0.277  Sum_probs=43.2

Q ss_pred             ceeecCCCCCC--ccchhhhccCCccEEeecCcCcccccccc-ccCcccccccccCCCC
Q 038658          218 RYLNLSGTQIR--TLPESVNKLYNLHTLSLEGCRGLRKLCAG-MGNLIKLHHLNNSNTD  273 (831)
Q Consensus       218 r~L~L~~~~i~--~lp~~i~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~l~~~~  273 (831)
                      .+++.+++.++  .+|..+.  .+|++|+|++|. +..+|.+ |..+++|+.|+|++|.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence            47888999998  8986543  469999999976 6667655 7889999999999986

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=91.12  E-value=0.089  Score=48.26  Aligned_cols=88  Identities=19%  Similarity=0.166  Sum_probs=61.5

Q ss_pred             ccccCCcceEEEEeCCCCccc-----cCccccCCCCCceeecCCCCCC-----ccchhhhccCCccEEeecCcCc--cc-
Q 038658          186 PKLFKLQRLRVFSLCGYWISE-----LPDSIGDLRYLRYLNLSGTQIR-----TLPESVNKLYNLHTLSLEGCRG--LR-  252 (831)
Q Consensus       186 ~~~~~l~~L~~L~L~~~~i~~-----lp~~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~--~~-  252 (831)
                      ..+..-+.|+.|+|++|.|..     +-+.+..-+.|++|+|++|.|.     .+-+.+..-+.|++|+|++|..  ++ 
T Consensus        64 ~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~  143 (197)
T 1pgv_A           64 EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGN  143 (197)
T ss_dssp             HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCH
T ss_pred             HHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCH
Confidence            334456789999999999873     3455566688999999999987     3445666677899999986532  22 


Q ss_pred             ----cccccccCcccccccccCCCC
Q 038658          253 ----KLCAGMGNLIKLHHLNNSNTD  273 (831)
Q Consensus       253 ----~lp~~i~~L~~L~~L~l~~~~  273 (831)
                          .+...+..-+.|+.|+++.+.
T Consensus       144 ~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          144 QVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHHHhCCCcCeEeccCCC
Confidence                133344555678888887664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	831
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.004
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.001
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.004
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.002
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.003

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 3e-04
 Identities = 41/242 (16%), Positives = 78/242 (32%), Gaps = 5/242 (2%)

Query: 180 LAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQI--RTLPESVNKL 237
           L   +  +L     +  F     ++ +          +++++LS + I   TL   +++ 
Sbjct: 12  LHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQC 70

Query: 238 YNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVG 297
             L  LSLEG R    +   +     L  LN S      E  L     +C +     +  
Sbjct: 71  SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW 130

Query: 298 KDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKG 357
               +       + H+  T+T   L   + + +K+    ++R   +     L ++   K 
Sbjct: 131 CFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN 190

Query: 358 VLDM-LKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPS-VGQLPS 415
                      L+   +S          L       L TL+        TL      LP 
Sbjct: 191 DCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPH 250

Query: 416 LK 417
           L+
Sbjct: 251 LQ 252

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 3e-04
 Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 8/81 (9%)

Query: 189 FKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGC 248
                L   ++    + ELP        L  L  S   +  +PE      NL  L +E  
Sbjct: 281 DLPPSLEELNVSNNKLIELPALPP---RLERLIASFNHLAEVPEL---PQNLKQLHVEYN 334

Query: 249 RGLRKLCAGMGNLIKLHHLNN 269
             LR+      ++  L  +N+
Sbjct: 335 P-LREFPDIPESVEDL-RMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 0.004
 Identities = 18/76 (23%), Positives = 26/76 (34%), Gaps = 8/76 (10%)

Query: 214 LRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTD 273
              L  LN+S  ++  LP        L  L       L ++     NL +LH   N    
Sbjct: 283 PPSLEELNVSNNKLIELPAL---PPRLERLIASFNH-LAEVPELPQNLKQLHVEYN---- 334

Query: 274 SLEEMPLGIGKLTCLQ 289
            L E P     +  L+
Sbjct: 335 PLREFPDIPESVEDLR 350

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 4e-04
 Identities = 23/126 (18%), Positives = 44/126 (34%), Gaps = 4/126 (3%)

Query: 195 RVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKL 254
           RV  L    ++ L   +  L  + +L+LS  ++R LP ++  L  L  L           
Sbjct: 1   RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 255 CAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTL--CNFVVGKDSGSRLRELKLLTH 312
                  ++   L N+           +     L  L      + ++ G + R  ++L  
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAA-IQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

Query: 313 LRGTLT 318
           +   LT
Sbjct: 119 VSSILT 124

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 40.1 bits (92), Expect = 7e-04
 Identities = 9/46 (19%), Positives = 16/46 (34%)

Query: 206 ELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGL 251
            LP  +  L++L  LN+S   +         L      +    + L
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 0.001
 Identities = 25/133 (18%), Positives = 43/133 (32%), Gaps = 4/133 (3%)

Query: 185 LPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLS 244
             +     R R   L GY I  + +    L     ++ S  +IR L      L  L TL 
Sbjct: 11  AAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLL 69

Query: 245 L--EGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEM-PLGIGKLTCLQTLCNFVVGKDSG 301
           +       + +        +    L N++   L ++ PL   K      +    V     
Sbjct: 70  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 129

Query: 302 SRLRELKLLTHLR 314
            RL  +  +  +R
Sbjct: 130 YRLYVIYKVPQVR 142

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 0.001
 Identities = 21/125 (16%), Positives = 39/125 (31%), Gaps = 13/125 (10%)

Query: 134 SFSKNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAH----------- 182
           S    L  L     +   +     L  + +L          S    L +           
Sbjct: 260 SGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI 319

Query: 183 SILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHT 242
           S +  +  L +L+        +S++  S+ +L  + +L+    QI  L    N L  +  
Sbjct: 320 SDISPVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTPLAN-LTRITQ 377

Query: 243 LSLEG 247
           L L  
Sbjct: 378 LGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 0.002
 Identities = 47/346 (13%), Positives = 104/346 (30%), Gaps = 17/346 (4%)

Query: 191 LQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVN--KLYNLHTLSLEGC 248
           L ++         I  + D +  L  L  +N S  Q+  +    N  KL ++   + +  
Sbjct: 43  LDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIA 101

Query: 249 RGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELK 308
                        + L +   ++ D L+ +           T+ +        S  +   
Sbjct: 102 DITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF 161

Query: 309 LLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNL 368
                      +     +LD   N    +      T+  SL     Q   +  L    NL
Sbjct: 162 GNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNL 221

Query: 369 EQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHLAVRRM---- 424
           ++  ++G            +S +NL  L   +    + L  +  L  L  L +       
Sbjct: 222 DELSLNGNQLKDIGTL---ASLTNLTDLDLANN-QISNLAPLSGLTKLTELKLGANQISN 277

Query: 425 -SRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGC 483
            S +  L +             +  +     L +   +   +   +     L +L+ +  
Sbjct: 278 ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLT-LYFNNISDISPVSSLTKLQRLFF 336

Query: 484 SKLKGTFPE---HLPALEMLVIGGCE-ELLVSITSLPALSKLEIGG 525
           +  K +      +L  +  L  G  +   L  + +L  +++L +  
Sbjct: 337 ANNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.004
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 15/146 (10%)

Query: 137 KNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKL-------- 188
            NL  L     +   +     L  +  L+       + S    L      +L        
Sbjct: 241 TNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI 300

Query: 189 ---FKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSL 245
                L+ L   +L    IS++   +  L  L+ L  +  ++  +  S+  L N++ LS 
Sbjct: 301 SPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSA 358

Query: 246 EGCRGLRKLCAGMGNLIKLHHLNNSN 271
              + +  L   + NL ++  L  ++
Sbjct: 359 GHNQ-ISDL-TPLANLTRITQLGLND 382

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 30/145 (20%), Positives = 53/145 (36%), Gaps = 5/145 (3%)

Query: 204 ISELPDSIGDLRYLRYLNLSGTQIRTLPESV-NKLYNLHTLSLEGCRGLRKLCAGMGNLI 262
           + ++P  +        L+L   +I  + +     L NLHTL L   +  +        L+
Sbjct: 22  LEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV 79

Query: 263 KLHHL--NNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTIS 320
           KL  L  + +    L E      +   +       V K   + L ++ ++      L  S
Sbjct: 80  KLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS 139

Query: 321 KLENAQLDGKKNLKVLMLRWTNSTD 345
            +EN    G K L  + +  TN T 
Sbjct: 140 GIENGAFQGMKKLSYIRIADTNITT 164

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.5 bits (88), Expect = 0.003
 Identities = 24/110 (21%), Positives = 37/110 (33%), Gaps = 2/110 (1%)

Query: 182 HSILPKLF-KLQRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTLPESVNKLYN 239
             I    F  L+ L    L    IS++ P +   L  L  L LS  Q++ LPE + K   
Sbjct: 44  TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQ 103

Query: 240 LHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQ 289
              +       +RK      N + +  L  +   S          +  L 
Sbjct: 104 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 153

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	831
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.84
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.79
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.76
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.75
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.73
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.7
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.69
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.66
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.66
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.64
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.58
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.55
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.46
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.46
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.44
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.4
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.38
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.32
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.31
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.29
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.27
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.26
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.26
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.23
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.2
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.17
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.11
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.99
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.95
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.88
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.86
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.81
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.78
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.66
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.28
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.21
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.77
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.75
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.13
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.02
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.84
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.25

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.84  E-value=1.4e-19  Score=191.82  Aligned_cols=80  Identities=19%  Similarity=0.306  Sum_probs=69.3

Q ss_pred             CCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCccccccccc
Q 038658          190 KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNN  269 (831)
Q Consensus       190 ~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l  269 (831)
                      .+.+|++|+++++.|+.+ +.++.+++|++|++++|+|+.+|+ ++++++|++|++++|. +..++. ++.+++|+.|++
T Consensus        42 ~l~~l~~L~l~~~~I~~l-~gl~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~-i~~i~~-l~~l~~L~~L~~  117 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ-IADITP-LANLTNLTGLTL  117 (384)
T ss_dssp             HHTTCCEEECCSSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEEC
T ss_pred             HhCCCCEEECCCCCCCCc-cccccCCCCCEEeCcCCcCCCCcc-ccCCcccccccccccc-cccccc-cccccccccccc
Confidence            567899999999999988 578899999999999999999974 9999999999999986 555554 889999999999


Q ss_pred             CCCC
Q 038658          270 SNTD  273 (831)
Q Consensus       270 ~~~~  273 (831)
                      +++.
T Consensus       118 ~~~~  121 (384)
T d2omza2         118 FNNQ  121 (384)
T ss_dssp             CSSC
T ss_pred             cccc
Confidence            8887

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=5.6e-18  Score=179.32  Aligned_cols=76  Identities=24%  Similarity=0.375  Sum_probs=65.1

Q ss_pred             cCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcccccccccCCCCCcccccCCCCCccccccc
Q 038658          212 GDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTL  291 (831)
Q Consensus       212 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L  291 (831)
                      ..+.+|++|+++++.|+.+ +.+..|++|++|++++|. ++.+|. ++++++|++|++++|. +..++ .++++++|+.|
T Consensus        41 ~~l~~l~~L~l~~~~I~~l-~gl~~L~nL~~L~Ls~N~-l~~l~~-l~~L~~L~~L~L~~n~-i~~i~-~l~~l~~L~~L  115 (384)
T d2omza2          41 TDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQ-LTDITP-LKNLTKLVDILMNNNQ-IADIT-PLANLTNLTGL  115 (384)
T ss_dssp             HHHTTCCEEECCSSCCCCC-TTGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCCEE
T ss_pred             HHhCCCCEEECCCCCCCCc-cccccCCCCCEEeCcCCc-CCCCcc-ccCCcccccccccccc-ccccc-ccccccccccc
Confidence            5678999999999999988 578999999999999985 777775 9999999999999998 55555 37888888887


Q ss_pred             c
Q 038658          292 C  292 (831)
Q Consensus       292 ~  292 (831)
                      .
T Consensus       116 ~  116 (384)
T d2omza2         116 T  116 (384)
T ss_dssp             E
T ss_pred             c
Confidence            4

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.76  E-value=1.3e-17  Score=169.89  Aligned_cols=193  Identities=22%  Similarity=0.237  Sum_probs=105.4

Q ss_pred             ceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccch-hhhccCCccEEeecCcCccccccccccCcccccccccCC
Q 038658          193 RLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPE-SVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSN  271 (831)
Q Consensus       193 ~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~  271 (831)
                      ..+++|-++..++++|..+.  +++++|+|++|+|+++|+ ++.++++|++|++++|......|..|.++++|++|++++
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             cCCEEEecCCCCCccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            34556666666777766653  567777777777777764 567777777777777664444455677777777777777


Q ss_pred             CCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCChhh
Q 038658          272 TDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLRE  351 (831)
Q Consensus       272 ~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  351 (831)
                      |+ ++.+|..+.  ..++.|...                     .+.+..+....+.....+..+....+....      
T Consensus        89 n~-l~~l~~~~~--~~l~~L~~~---------------------~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~------  138 (305)
T d1xkua_          89 NQ-LKELPEKMP--KTLQELRVH---------------------ENEITKVRKSVFNGLNQMIVVELGTNPLKS------  138 (305)
T ss_dssp             SC-CSBCCSSCC--TTCCEEECC---------------------SSCCCBBCHHHHTTCTTCCEEECCSSCCCG------
T ss_pred             Cc-cCcCccchh--hhhhhhhcc---------------------ccchhhhhhhhhhccccccccccccccccc------
Confidence            76 555654422  222333110                     111111112222233333333332221100      


Q ss_pred             hhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCC-CCCCCCCcceEEeccc
Q 038658          352 AETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLP-SVGQLPSLKHLAVRRM  424 (831)
Q Consensus       352 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~  424 (831)
                         .......+..+++|+.+.++++....+|..+    +++|+.|++++|......+ .+..++.++.|.++++
T Consensus       139 ---~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~----~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n  205 (305)
T d1xkua_         139 ---SGIENGAFQGMKKLSYIRIADTNITTIPQGL----PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN  205 (305)
T ss_dssp             ---GGBCTTGGGGCTTCCEEECCSSCCCSCCSSC----CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS
T ss_pred             ---cCCCccccccccccCccccccCCccccCccc----CCccCEEECCCCcCCCCChhHhhccccccccccccc
Confidence               0011223445567777777777766666543    4677777777776655544 5566666777766654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.75  E-value=4e-19  Score=181.87  Aligned_cols=106  Identities=21%  Similarity=0.276  Sum_probs=83.7

Q ss_pred             cccccccCCcceEEEEeCC-CCcc-ccCccccCCCCCceeecCCCCCCcc-chhhhccCCccEEeecCcCcccccccccc
Q 038658          183 SILPKLFKLQRLRVFSLCG-YWIS-ELPDSIGDLRYLRYLNLSGTQIRTL-PESVNKLYNLHTLSLEGCRGLRKLCAGMG  259 (831)
Q Consensus       183 ~~~~~~~~l~~L~~L~L~~-~~i~-~lp~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~i~  259 (831)
                      .+|+.+.++++|++|+|++ |.+. .+|.+|+++++|++|+|++|++..+ |..+..+.+|+++++++|.....+|..++
T Consensus        67 ~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~  146 (313)
T d1ogqa_          67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS  146 (313)
T ss_dssp             ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred             CCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhc
Confidence            4677777888888888876 5655 6788888888888888888888755 45678888888888888877777888888


Q ss_pred             CcccccccccCCCCCcccccCCCCCcccc
Q 038658          260 NLIKLHHLNNSNTDSLEEMPLGIGKLTCL  288 (831)
Q Consensus       260 ~L~~L~~L~l~~~~~~~~~p~~~~~L~~L  288 (831)
                      ++++|+++++++|...+.+|..++.+.++
T Consensus       147 ~l~~L~~l~l~~n~l~~~ip~~~~~l~~l  175 (313)
T d1ogqa_         147 SLPNLVGITFDGNRISGAIPDSYGSFSKL  175 (313)
T ss_dssp             GCTTCCEEECCSSCCEEECCGGGGCCCTT
T ss_pred             cCcccceeecccccccccccccccccccc
Confidence            88888888888888666778777777665

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.73  E-value=1.2e-18  Score=178.32  Aligned_cols=101  Identities=23%  Similarity=0.369  Sum_probs=91.1

Q ss_pred             cceEEEEeCCCCcc---ccCccccCCCCCceeecCC-CCCC-ccchhhhccCCccEEeecCcCccccccccccCcccccc
Q 038658          192 QRLRVFSLCGYWIS---ELPDSIGDLRYLRYLNLSG-TQIR-TLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHH  266 (831)
Q Consensus       192 ~~L~~L~L~~~~i~---~lp~~~~~l~~Lr~L~L~~-~~i~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~  266 (831)
                      .+++.|+|+++.+.   .+|.+++++++|++|+|++ |++. .+|++|++|++|++|+|++|......|..+..+.+|++
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            46899999999876   5899999999999999997 6777 89999999999999999999877777888999999999


Q ss_pred             cccCCCCCcccccCCCCCcccccccc
Q 038658          267 LNNSNTDSLEEMPLGIGKLTCLQTLC  292 (831)
Q Consensus       267 L~l~~~~~~~~~p~~~~~L~~L~~L~  292 (831)
                      +++++|.....+|..++++++|+.+.
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~  155 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGIT  155 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred             cccccccccccCchhhccCcccceee
Confidence            99999998888999999999998883

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.70  E-value=5.9e-15  Score=153.71  Aligned_cols=88  Identities=25%  Similarity=0.322  Sum_probs=62.9

Q ss_pred             cceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcccccccccCC
Q 038658          192 QRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSN  271 (831)
Q Consensus       192 ~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~  271 (831)
                      .++++|||+++.++.+|+.   +++|++|++++|+|+++|..+   .+|+.|++++|. +..++. +  .+.|++|++++
T Consensus        38 ~~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~-l~~l~~-l--p~~L~~L~L~~  107 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPELP---QSLKSLLVDNNN-LKALSD-L--PPLLEYLGVSN  107 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSC-CSCCCS-C--CTTCCEEECCS
T ss_pred             cCCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccch---hhhhhhhhhhcc-cchhhh-h--ccccccccccc
Confidence            3688999999999999864   468999999999999998764   578888888865 444442 1  13588888888


Q ss_pred             CCCcccccCCCCCccccccc
Q 038658          272 TDSLEEMPLGIGKLTCLQTL  291 (831)
Q Consensus       272 ~~~~~~~p~~~~~L~~L~~L  291 (831)
                      |. +..+|. ++.+++|++|
T Consensus       108 n~-l~~lp~-~~~l~~L~~L  125 (353)
T d1jl5a_         108 NQ-LEKLPE-LQNSSFLKII  125 (353)
T ss_dssp             SC-CSSCCC-CTTCTTCCEE
T ss_pred             cc-cccccc-hhhhccceee
Confidence            86 555553 3444444443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.69  E-value=5.2e-15  Score=154.12  Aligned_cols=80  Identities=21%  Similarity=0.282  Sum_probs=60.2

Q ss_pred             CcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcccccccccC
Q 038658          191 LQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNS  270 (831)
Q Consensus       191 l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~  270 (831)
                      .++|++|++++|.|+++|+.+   .+|+.|++++|+++.++.-   ...|++|++++|. +..+|. ++.+++|++|+++
T Consensus        57 ~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~n~-l~~lp~-~~~l~~L~~L~l~  128 (353)
T d1jl5a_          57 PPHLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQ-LEKLPE-LQNSSFLKIIDVD  128 (353)
T ss_dssp             CTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCSC---CTTCCEEECCSSC-CSSCCC-CTTCTTCCEEECC
T ss_pred             CCCCCEEECCCCCCcccccch---hhhhhhhhhhcccchhhhh---ccccccccccccc-cccccc-hhhhccceeeccc
Confidence            467888999999998888654   5778888888888776532   1468899998875 667775 6788899999988


Q ss_pred             CCCCccccc
Q 038658          271 NTDSLEEMP  279 (831)
Q Consensus       271 ~~~~~~~~p  279 (831)
                      ++. ....|
T Consensus       129 ~~~-~~~~~  136 (353)
T d1jl5a_         129 NNS-LKKLP  136 (353)
T ss_dssp             SSC-CSCCC
T ss_pred             ccc-ccccc
Confidence            876 44444

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.66  E-value=7e-15  Score=149.21  Aligned_cols=258  Identities=17%  Similarity=0.169  Sum_probs=167.0

Q ss_pred             CccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCC-CCCCCCCcceEEeccccCceeeCccccCCCCCCCCCC
Q 038658          367 NLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLP-SVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPC  445 (831)
Q Consensus       367 ~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~  445 (831)
                      ..+.++-++.+.+.+|..+    .+++++|++++|.+....+ .+.++++|++|+++++.... +.              
T Consensus        11 ~~~~~~C~~~~L~~lP~~l----~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~-i~--------------   71 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDL----PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK-IS--------------   71 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSC----CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCC-BC--------------
T ss_pred             cCCEEEecCCCCCccCCCC----CCCCCEEECcCCcCCCcChhHhhccccccccccccccccc-cc--------------
Confidence            3455555666677788765    3678888888887766555 57788888888887764221 11              


Q ss_pred             cceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCCC-CCCcccEEEEccccCcc---ccCCCCCccceE
Q 038658          446 LETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPE-HLPALEMLVIGGCEELL---VSITSLPALSKL  521 (831)
Q Consensus       446 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~-~l~~L~~L~l~~~~~l~---~~~~~l~~L~~L  521 (831)
                                          +..+..+++|++|++++| +++ .+|. ..+.+..|.+.++....   ..+..       
T Consensus        72 --------------------~~~f~~l~~L~~L~l~~n-~l~-~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~-------  122 (305)
T d1xkua_          72 --------------------PGAFAPLVKLERLYLSKN-QLK-ELPEKMPKTLQELRVHENEITKVRKSVFNG-------  122 (305)
T ss_dssp             --------------------TTTTTTCTTCCEEECCSS-CCS-BCCSSCCTTCCEEECCSSCCCBBCHHHHTT-------
T ss_pred             --------------------hhhhhCCCccCEecccCC-ccC-cCccchhhhhhhhhccccchhhhhhhhhhc-------
Confidence                                111446777888888774 566 5553 33445555544433111   01111       


Q ss_pred             EEcCCCCccccccccccCCCCceeeccccchhhccCCCCCCCCCCcEEEEccCCCcchhcccCCcccccCCCccEEeeec
Q 038658          522 EIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGW  601 (831)
Q Consensus       522 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~  601 (831)
                                                               ...+..+....+.....  ......+..+++|+.+.+++
T Consensus       123 -----------------------------------------~~~~~~l~~~~n~~~~~--~~~~~~~~~l~~L~~l~l~~  159 (305)
T d1xkua_         123 -----------------------------------------LNQMIVVELGTNPLKSS--GIENGAFQGMKKLSYIRIAD  159 (305)
T ss_dssp             -----------------------------------------CTTCCEEECCSSCCCGG--GBCTTGGGGCTTCCEEECCS
T ss_pred             -----------------------------------------ccccccccccccccccc--CCCccccccccccCcccccc
Confidence                                                     22333333333322111  12223456677788888877


Q ss_pred             CCCcccchhhhhhhHhhhhcccCCccEEEeccCCCCcccccccCCCCCCCeEEEecCCCCccccCCCC--CCCccEEEEe
Q 038658          602 CPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSLLSLSSLREIEIYNCSSFVSFPEVAL--PSKVRSISIH  679 (831)
Q Consensus       602 c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~l~~~~~--~~~L~~L~l~  679 (831)
                      + .+..++.          ..+++|+.|++++|......+..+..++.++.|++++| .++.++...+  +++|++|+++
T Consensus       160 n-~l~~l~~----------~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n-~l~~~~~~~~~~l~~L~~L~L~  227 (305)
T d1xkua_         160 T-NITTIPQ----------GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLN  227 (305)
T ss_dssp             S-CCCSCCS----------SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECC
T ss_pred             C-CccccCc----------ccCCccCEEECCCCcCCCCChhHhhccccccccccccc-cccccccccccccccceeeecc
Confidence            4 4554442          23467999999998888888888888999999999998 6777765544  7899999999


Q ss_pred             cCCCCcccccccccCCCCCcCeEEEccCCCcceeccCC--------CCCCCceEEEecCC
Q 038658          680 RCDALKSLPEAWMCDANLSLEILTISRCHSLTYIAEVQ--------LPPSLKNVVIRNCD  731 (831)
Q Consensus       680 ~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~--------~~~~L~~L~l~~c~  731 (831)
                      +| .++.+|..+..  +++|++|++++| +++.++...        ..++|+.|++++++
T Consensus       228 ~N-~L~~lp~~l~~--l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         228 NN-KLVKVPGGLAD--HKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             SS-CCSSCCTTTTT--CSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             cc-ccccccccccc--ccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEECCCCc
Confidence            97 57788887766  899999999986 587776432        23678888888754

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=4.7e-16  Score=154.06  Aligned_cols=60  Identities=22%  Similarity=0.253  Sum_probs=33.5

Q ss_pred             CCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCC-CCCCCCCcceEEeccc
Q 038658          363 KPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLP-SVGQLPSLKHLAVRRM  424 (831)
Q Consensus       363 ~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~  424 (831)
                      ..+++++.+++++|.+..+|..... .+++|++|++++|.+. .+| .+..+++|+.|+|+++
T Consensus       145 ~~l~~l~~l~l~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~N  205 (266)
T d1p9ag_         145 TPTPKLEKLSLANNNLTELPAGLLN-GLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN  205 (266)
T ss_dssp             TTCTTCCEEECTTSCCSCCCTTTTT-TCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSC
T ss_pred             cccccchhcccccccccccCccccc-cccccceeecccCCCc-ccChhHCCCCCCCEEEecCC
Confidence            3445566666666665555443221 2566666666666655 333 4555666666666654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3.5e-16  Score=154.94  Aligned_cols=183  Identities=19%  Similarity=0.102  Sum_probs=140.8

Q ss_pred             cccccccCCcceEEEEeCCCCccccC-ccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCc
Q 038658          183 SILPKLFKLQRLRVFSLCGYWISELP-DSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNL  261 (831)
Q Consensus       183 ~~~~~~~~l~~L~~L~L~~~~i~~lp-~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L  261 (831)
                      .+|+++.  +++++|+|++|.|+.+| .+|.++++|++|+|++|+|+.+|. ++.+++|++|++++|. +...|..+..+
T Consensus        24 ~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~l   99 (266)
T d1p9ag_          24 ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQ-LQSLPLLGQTL   99 (266)
T ss_dssp             SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSC-CSSCCCCTTTC
T ss_pred             eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-cccccccccccccccc-ccccccccccc
Confidence            3455543  46889999999998885 568889999999999999988874 5788999999999875 66677778889


Q ss_pred             ccccccccCCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEee
Q 038658          262 IKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWT  341 (831)
Q Consensus       262 ~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~  341 (831)
                      ++|+.|+++++......+..+..+.++++|..                    . .+.+..+....+..+++++.++++.|
T Consensus       100 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l--------------------~-~n~l~~l~~~~~~~l~~l~~l~l~~N  158 (266)
T d1p9ag_         100 PALTVLDVSFNRLTSLPLGALRGLGELQELYL--------------------K-GNELKTLPPGLLTPTPKLEKLSLANN  158 (266)
T ss_dssp             TTCCEEECCSSCCCCCCSSTTTTCTTCCEEEC--------------------T-TSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             cccccccccccccceeeccccccccccccccc--------------------c-ccccceeccccccccccchhcccccc
Confidence            99999999988844434444677777777621                    1 23344555566777888999999877


Q ss_pred             cCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCC
Q 038658          342 NSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGM  403 (831)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~  403 (831)
                      .....           ..+.+..+++|+.|++++|++..+|..+..  +++|+.|++++|..
T Consensus       159 ~l~~~-----------~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~--~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         159 NLTEL-----------PAGLLNGLENLDTLLLQENSLYTIPKGFFG--SHLLPFAFLHGNPW  207 (266)
T ss_dssp             CCSCC-----------CTTTTTTCTTCCEEECCSSCCCCCCTTTTT--TCCCSEEECCSCCB
T ss_pred             ccccc-----------CccccccccccceeecccCCCcccChhHCC--CCCCCEEEecCCCC
Confidence            65433           334577889999999999999999988775  89999999999865

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=3.9e-15  Score=149.21  Aligned_cols=199  Identities=21%  Similarity=0.200  Sum_probs=133.5

Q ss_pred             cceEEEEeCCCCccccC-ccccCCCCCceeecCCCCCCccch-hhhccCCccEEeecCcCccccc-cccccCcccccccc
Q 038658          192 QRLRVFSLCGYWISELP-DSIGDLRYLRYLNLSGTQIRTLPE-SVNKLYNLHTLSLEGCRGLRKL-CAGMGNLIKLHHLN  268 (831)
Q Consensus       192 ~~L~~L~L~~~~i~~lp-~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~l-p~~i~~L~~L~~L~  268 (831)
                      +.+++|+|++|.|+.+| .+|.++++|++|++++|.+..++. .+..+..++.++...+..+..+ |..+.++++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            45789999999999886 468899999999999999987754 5577889999888766666666 45588899999999


Q ss_pred             cCCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCC
Q 038658          269 NSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSS  348 (831)
Q Consensus       269 l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~  348 (831)
                      +++|......+..++..++|+.+..                    . ...+..+....+...++|+.|++++|.....  
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l--------------------~-~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l--  168 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYL--------------------Q-DNALQALPDDTFRDLGNLTHLFLHGNRISSV--  168 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEEC--------------------C-SSCCCCCCTTTTTTCTTCCEEECCSSCCCEE--
T ss_pred             cCCcccccccccccchhcccchhhh--------------------c-cccccccChhHhccccchhhcccccCccccc--
Confidence            9998743333444666777766621                    1 2223333344556666677777766554221  


Q ss_pred             hhhhhhHHhhhcCCCCCCCccEEEEeeecCCCC-CccCCCCCCCceeEEEEecCCCCCCCC-CCCCCCCcceEEeccc
Q 038658          349 LREAETQKGVLDMLKPHKNLEQFFISGYGGTKF-PIWLGDSSFSNLVTLKFEDCGMCTTLP-SVGQLPSLKHLAVRRM  424 (831)
Q Consensus       349 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~  424 (831)
                               ....+..+++|+.+++++|....+ |.++..  +++|++|++++|.+.+..+ .++.+++|+.|+++++
T Consensus       169 ---------~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~--l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         169 ---------PERAFRGLHSLDRLLLHQNRVAHVHPHAFRD--LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             ---------CTTTTTTCTTCCEEECCSSCCCEECTTTTTT--CTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             ---------chhhhccccccchhhhhhccccccChhHhhh--hhhcccccccccccccccccccccccccCEEEecCC
Confidence                     223455666777777777666554 444443  6677777777776655444 4566677777777664

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2e-14  Score=143.92  Aligned_cols=94  Identities=24%  Similarity=0.195  Sum_probs=73.1

Q ss_pred             EEEeCCCCccccCccccCCCCCceeecCCCCCCccch-hhhccCCccEEeecCcCccccccccccCcccccccccCCCCC
Q 038658          196 VFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPE-SVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDS  274 (831)
Q Consensus       196 ~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~  274 (831)
                      +++.++..++++|..+.  ..+++|+|++|+|+++|. ++.++++|++|++++|......+..+..+..++.+....+..
T Consensus        15 ~v~c~~~~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          15 TTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             EEECCSSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EEEcCCCCCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            34677778899998775  678999999999999985 689999999999999765444455577888888887766554


Q ss_pred             ccccc-CCCCCccccccc
Q 038658          275 LEEMP-LGIGKLTCLQTL  291 (831)
Q Consensus       275 ~~~~p-~~~~~L~~L~~L  291 (831)
                      +..++ ..++++++|++|
T Consensus        93 ~~~l~~~~~~~l~~L~~L  110 (284)
T d1ozna_          93 LRSVDPATFHGLGRLHTL  110 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEE
T ss_pred             cccccchhhcccccCCEE
Confidence            66554 447777777777

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.46  E-value=1.3e-13  Score=132.61  Aligned_cols=80  Identities=23%  Similarity=0.370  Sum_probs=65.9

Q ss_pred             CCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCccccccccc
Q 038658          190 KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNN  269 (831)
Q Consensus       190 ~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l  269 (831)
                      .+.+|+.|++.+|.|+.+ +.+.++++|++|++++|.++.+++ +.++++|+++++++|. .+.++ ++..+++|+.+++
T Consensus        39 ~l~~L~~L~l~~~~i~~l-~~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~-~~~i~-~l~~l~~L~~l~l  114 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDL  114 (227)
T ss_dssp             HHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEEC
T ss_pred             HcCCcCEEECCCCCCCcc-hhHhcCCCCcEeecCCceeecccc-cccccccccccccccc-ccccc-ccccccccccccc
Confidence            677889999999998888 468889999999999998887753 8889999999998875 45554 4788889999988


Q ss_pred             CCCC
Q 038658          270 SNTD  273 (831)
Q Consensus       270 ~~~~  273 (831)
                      +++.
T Consensus       115 ~~~~  118 (227)
T d1h6ua2         115 TSTQ  118 (227)
T ss_dssp             TTSC
T ss_pred             cccc
Confidence            8876

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.46  E-value=1.6e-13  Score=129.80  Aligned_cols=166  Identities=20%  Similarity=0.276  Sum_probs=109.1

Q ss_pred             CCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCccccccccc
Q 038658          190 KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNN  269 (831)
Q Consensus       190 ~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l  269 (831)
                      .+..|+.|++++|.++.++ .+..+++|++|++++|.|+.++ .++.+++|++|++++|. +..+| .+..+++|+.|++
T Consensus        44 ~L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l  119 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLSL  119 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEEEC
T ss_pred             HhcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCccccCcc-ccccCcccccccccccc-ccccc-ccccccccccccc
Confidence            4667888899988888775 4788889999999999888876 46888899999998875 56666 4888888999988


Q ss_pred             CCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCCh
Q 038658          270 SNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSL  349 (831)
Q Consensus       270 ~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~  349 (831)
                      ++|. ...++ .+..+++++.+                                             +++++....    
T Consensus       120 ~~~~-~~~~~-~l~~l~~l~~l---------------------------------------------~~~~n~l~~----  148 (210)
T d1h6ta2         120 EHNG-ISDIN-GLVHLPQLESL---------------------------------------------YLGNNKITD----  148 (210)
T ss_dssp             TTSC-CCCCG-GGGGCTTCCEE---------------------------------------------ECCSSCCCC----
T ss_pred             cccc-ccccc-ccccccccccc---------------------------------------------ccccccccc----
Confidence            8886 33332 34444443333                                             222222111    


Q ss_pred             hhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCCCCCCCCCcceEEecc
Q 038658          350 REAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHLAVRR  423 (831)
Q Consensus       350 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~  423 (831)
                               ......+++|+.++++++....++. +.  .+++|+.|++++|.+. .++.+..+++|++|+|++
T Consensus       149 ---------~~~~~~l~~L~~l~l~~n~l~~i~~-l~--~l~~L~~L~Ls~N~i~-~l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         149 ---------ITVLSRLTKLDTLSLEDNQISDIVP-LA--GLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELFS  209 (210)
T ss_dssp             ---------CGGGGGCTTCSEEECCSSCCCCCGG-GT--TCTTCCEEECCSSCCC-BCGGGTTCTTCSEEEEEE
T ss_pred             ---------ccccccccccccccccccccccccc-cc--CCCCCCEEECCCCCCC-CChhhcCCCCCCEEEccC
Confidence                     0112234566666666666665543 22  2677777777777654 455667777777777753

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.44  E-value=2.1e-13  Score=127.90  Aligned_cols=80  Identities=18%  Similarity=0.275  Sum_probs=61.6

Q ss_pred             CCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCccccccccc
Q 038658          190 KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNN  269 (831)
Q Consensus       190 ~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l  269 (831)
                      .+.++++|+++++.+..++ .++.+++|++|++++|+++.++. ++++++|++|++++|. ...+| .++++++|+.|++
T Consensus        38 ~l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~l  113 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ-IADIT-PLANLTNLTGLTL  113 (199)
T ss_dssp             HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSEEEC
T ss_pred             HhcCCCEEECCCCCCCCcc-ccccCCCcCcCccccccccCccc-ccCCcccccccccccc-ccccc-ccccccccccccc
Confidence            4667888888888888773 57788888888888888887764 7888888888888865 44454 3778888888888


Q ss_pred             CCCC
Q 038658          270 SNTD  273 (831)
Q Consensus       270 ~~~~  273 (831)
                      ++|.
T Consensus       114 ~~~~  117 (199)
T d2omxa2         114 FNNQ  117 (199)
T ss_dssp             CSSC
T ss_pred             cccc
Confidence            7776

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.1e-13  Score=132.90  Aligned_cols=105  Identities=19%  Similarity=0.268  Sum_probs=72.0

Q ss_pred             cccccccCCcceEEEEeCCCCccccCc-cccCCCCCceeecCCCCCCc-cc-hhhhccCCccEEeecCcCccccc-cccc
Q 038658          183 SILPKLFKLQRLRVFSLCGYWISELPD-SIGDLRYLRYLNLSGTQIRT-LP-ESVNKLYNLHTLSLEGCRGLRKL-CAGM  258 (831)
Q Consensus       183 ~~~~~~~~l~~L~~L~L~~~~i~~lp~-~~~~l~~Lr~L~L~~~~i~~-lp-~~i~~L~~L~~L~l~~~~~~~~l-p~~i  258 (831)
                      .+|+.++  +++++|++++|.++.+|. +|.++++||+|++++|.+.. +| ..+.+++++++|++..+..+..+ +..+
T Consensus        22 ~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~   99 (242)
T d1xwdc1          22 EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF   99 (242)
T ss_dssp             SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSE
T ss_pred             CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccc
Confidence            4555554  467888888888888864 57888888888888887764 33 45778888888887765445444 4557


Q ss_pred             cCcccccccccCCCCCcccccCCCCCccccccc
Q 038658          259 GNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTL  291 (831)
Q Consensus       259 ~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L  291 (831)
                      .++++|++|++++|. +...+ ....+.+++.+
T Consensus       100 ~~l~~L~~l~l~~~~-l~~~~-~~~~~~~l~~l  130 (242)
T d1xwdc1         100 QNLPNLQYLLISNTG-IKHLP-DVHKIHSLQKV  130 (242)
T ss_dssp             ECCTTCCEEEEESCC-CCSCC-CCTTTCBSSCE
T ss_pred             cccccccccccchhh-hcccc-ccccccccccc
Confidence            888888888888886 44333 23444444444

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.38  E-value=6.1e-13  Score=127.85  Aligned_cols=93  Identities=26%  Similarity=0.321  Sum_probs=70.4

Q ss_pred             ceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcccccccccCCC
Q 038658          193 RLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNT  272 (831)
Q Consensus       193 ~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~  272 (831)
                      ++..++++.+.++.+ ..+..+.+|++|++.+|+|+.+ +.+..+++|++|++++|. +..++. +..+++|+++++++|
T Consensus        20 ~~~~~~l~~~~~~d~-~~~~~l~~L~~L~l~~~~i~~l-~~l~~l~~L~~L~ls~n~-i~~~~~-l~~l~~l~~l~~~~n   95 (227)
T d1h6ua2          20 NAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGN   95 (227)
T ss_dssp             HHHHHHTTCSSTTSE-ECHHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSC
T ss_pred             HHHHHHhCCCCcCCc-CCHHHcCCcCEEECCCCCCCcc-hhHhcCCCCcEeecCCce-eecccc-ccccccccccccccc
Confidence            333345566666654 2456789999999999999999 469999999999999986 444443 899999999999998


Q ss_pred             CCcccccCCCCCccccccc
Q 038658          273 DSLEEMPLGIGKLTCLQTL  291 (831)
Q Consensus       273 ~~~~~~p~~~~~L~~L~~L  291 (831)
                      . .+.++ +++.+++|+.+
T Consensus        96 ~-~~~i~-~l~~l~~L~~l  112 (227)
T d1h6ua2          96 P-LKNVS-AIAGLQSIKTL  112 (227)
T ss_dssp             C-CSCCG-GGTTCTTCCEE
T ss_pred             c-ccccc-ccccccccccc
Confidence            7 55554 46667766666

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.32  E-value=7.4e-12  Score=118.12  Aligned_cols=164  Identities=14%  Similarity=0.227  Sum_probs=114.2

Q ss_pred             CCccEEEeccCCCCcccccccCCCCCCCeEEEecCCCCccccCCCCCCCccEEEEecCCCCcccccccccCCCCCcCeEE
Q 038658          624 CRLEYLLLNDCKGLVKLPQSLLSLSSLREIEIYNCSSFVSFPEVALPSKVRSISIHRCDALKSLPEAWMCDANLSLEILT  703 (831)
Q Consensus       624 ~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~  703 (831)
                      .+|++|++++|... .++ ++..+++|++|++++| .++.++....+++|+.|++++| .++.++ .+..  +++|+.|+
T Consensus        46 ~~L~~L~l~~~~i~-~l~-~l~~l~~L~~L~L~~n-~i~~l~~~~~l~~L~~L~l~~n-~i~~l~-~l~~--l~~L~~L~  118 (210)
T d1h6ta2          46 NSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGN-KLTDIKPLANLKNLGWLFLDEN-KVKDLS-SLKD--LKKLKSLS  118 (210)
T ss_dssp             HTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCGG-GGTT--CTTCCEEE
T ss_pred             cCccEEECcCCCCC-Cch-hHhhCCCCCEEeCCCc-cccCccccccCccccccccccc-cccccc-cccc--cccccccc
Confidence            36788888887643 343 4667888888888887 5677766556788888888876 466665 3444  88888888


Q ss_pred             EccCCCcceeccCCCCCCCceEEEecCCCCCccccccCccCCcccccCccccceEEEecCCCcccccchhhhhhhhhccc
Q 038658          704 ISRCHSLTYIAEVQLPPSLKNVVIRNCDNVRTLTVEEGIQSSSSRRYTSSLLEHLHIESCPSLTCIFSKNELLATLESLE  783 (831)
Q Consensus       704 l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~l~~~~L~~L~i~~c~~l~~i~~~~~~~~~l~~l~  783 (831)
                      +++|. +..++.....++++.++++++ .++...   ....     +++  |+++++++|. +..+.            +
T Consensus       119 l~~~~-~~~~~~l~~l~~l~~l~~~~n-~l~~~~---~~~~-----l~~--L~~l~l~~n~-l~~i~------------~  173 (210)
T d1h6ta2         119 LEHNG-ISDINGLVHLPQLESLYLGNN-KITDIT---VLSR-----LTK--LDTLSLEDNQ-ISDIV------------P  173 (210)
T ss_dssp             CTTSC-CCCCGGGGGCTTCCEEECCSS-CCCCCG---GGGG-----CTT--CSEEECCSSC-CCCCG------------G
T ss_pred             ccccc-ccccccccccccccccccccc-cccccc---cccc-----ccc--cccccccccc-ccccc------------c
Confidence            88874 445554455578888888764 455441   2222     566  9999998873 44422            3


Q ss_pred             cCCCCCCcCeeEEccCCchhhhhhcCCCCCCCceEEecC
Q 038658          784 VGNLPPSLKSLEVLSCSKLESIAERLDNNTSLETITIIS  822 (831)
Q Consensus       784 ~~~l~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~i~~  822 (831)
                      ...+ ++|+.|++++|. +++++ .+..+++|+.|++++
T Consensus       174 l~~l-~~L~~L~Ls~N~-i~~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         174 LAGL-TKLQNLYLSKNH-ISDLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             GTTC-TTCCEEECCSSC-CCBCG-GGTTCTTCSEEEEEE
T ss_pred             ccCC-CCCCEEECCCCC-CCCCh-hhcCCCCCCEEEccC
Confidence            3445 889999999874 77776 588899999999864

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.4e-13  Score=136.92  Aligned_cols=210  Identities=15%  Similarity=0.245  Sum_probs=139.5

Q ss_pred             ccCCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEeccCCCCcccccccCCCCCCCeEEEecCCCCccccCC-
Q 038658          589 QDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSLLSLSSLREIEIYNCSSFVSFPEV-  667 (831)
Q Consensus       589 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~l~~~-  667 (831)
                      ....+|++|++++|. +..   +.   +..+..-.++|++|++++|......+..+..+++|++|++++|..+++..-. 
T Consensus        43 ~~~~~L~~LdLs~~~-i~~---~~---l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~  115 (284)
T d2astb2          43 FSPFRVQHMDLSNSV-IEV---ST---LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT  115 (284)
T ss_dssp             CCCBCCCEEECTTCE-ECH---HH---HHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH
T ss_pred             ccCCCCCEEECCCCc-cCH---HH---HHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccch
Confidence            355689999999873 321   11   2222233358999999999876666777888999999999999887643211 


Q ss_pred             --CCCCCccEEEEecCCCCcccc--cccccCCCCCcCeEEEccCC-Ccce--eccC-CCCCCCceEEEecCCCCCccccc
Q 038658          668 --ALPSKVRSISIHRCDALKSLP--EAWMCDANLSLEILTISRCH-SLTY--IAEV-QLPPSLKNVVIRNCDNVRTLTVE  739 (831)
Q Consensus       668 --~~~~~L~~L~l~~c~~l~~l~--~~~~~~~l~~L~~L~l~~c~-~l~~--l~~~-~~~~~L~~L~l~~c~~l~~l~~~  739 (831)
                        ..+++|++|++++|..++...  ..+. ...++|+.|++++|. .++.  +... ...++|++|++++|+.++.-. .
T Consensus       116 l~~~~~~L~~L~ls~c~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~-~  193 (284)
T d2astb2         116 LLSSCSRLDELNLSWCFDFTEKHVQVAVA-HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC-F  193 (284)
T ss_dssp             HHHHCTTCCEEECCCCTTCCHHHHHHHHH-HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG-G
T ss_pred             hhHHHHhccccccccccccccccchhhhc-ccccccchhhhcccccccccccccccccccccccccccccccCCCchh-h
Confidence              127899999999998876532  2222 235789999999874 3332  1111 235799999999999887542 2


Q ss_pred             cCccCCcccccCccccceEEEecCCCcccccchhhhhhhhhccccCCCCCCcCeeEEccCCchhhhhhcCCCCCCCceEE
Q 038658          740 EGIQSSSSRRYTSSLLEHLHIESCPSLTCIFSKNELLATLESLEVGNLPPSLKSLEVLSCSKLESIAERLDNNTSLETIT  819 (831)
Q Consensus       740 ~~~~~~~~~~l~~~~L~~L~i~~c~~l~~i~~~~~~~~~l~~l~~~~l~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~  819 (831)
                      ..+..     ++.  |++|++++|..+.+--     +.     ....+ |+|+.|++++|-.-..+......+|+|+.  
T Consensus       194 ~~l~~-----~~~--L~~L~L~~C~~i~~~~-----l~-----~L~~~-~~L~~L~l~~~~~d~~l~~l~~~lp~L~i--  253 (284)
T d2astb2         194 QEFFQ-----LNY--LQHLSLSRCYDIIPET-----LL-----ELGEI-PTLKTLQVFGIVPDGTLQLLKEALPHLQI--  253 (284)
T ss_dssp             GGGGG-----CTT--CCEEECTTCTTCCGGG-----GG-----GGGGC-TTCCEEECTTSSCTTCHHHHHHHSTTSEE--
T ss_pred             hhhcc-----cCc--CCEEECCCCCCCChHH-----HH-----HHhcC-CCCCEEeeeCCCCHHHHHHHHHhCccccc--
Confidence            33433     667  9999999999886510     11     11234 78999999998443444433345677653  


Q ss_pred             ecCCCCCCCC
Q 038658          820 IISCKNLKNL  829 (831)
Q Consensus       820 i~~C~~l~~l  829 (831)
                        +|..+..+
T Consensus       254 --~~~~ls~~  261 (284)
T d2astb2         254 --NCSHFTTI  261 (284)
T ss_dssp             --SCCCSCCT
T ss_pred             --cCccCCCC
Confidence              56666543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=4.8e-13  Score=133.06  Aligned_cols=181  Identities=19%  Similarity=0.215  Sum_probs=125.3

Q ss_pred             CCCCCcEEEEccCCCcchhcccCCcccccCCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEeccCCCCcc--
Q 038658          562 RLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVK--  639 (831)
Q Consensus       562 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~--  639 (831)
                      ...+|++|++++|.....   .....+..+++|++|++++|+ +..-      ....+... ++|++|++++|..++.  
T Consensus        44 ~~~~L~~LdLs~~~i~~~---~l~~l~~~c~~L~~L~L~~~~-l~~~------~~~~l~~~-~~L~~L~Ls~c~~itd~~  112 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVS---TLHGILSQCSKLQNLSLEGLR-LSDP------IVNTLAKN-SNLVRLNLSGCSGFSEFA  112 (284)
T ss_dssp             CCBCCCEEECTTCEECHH---HHHHHHTTBCCCSEEECTTCB-CCHH------HHHHHTTC-TTCSEEECTTCBSCCHHH
T ss_pred             cCCCCCEEECCCCccCHH---HHHHHHHhCCCcccccccccC-CCcH------HHHHHhcC-CCCcCccccccccccccc
Confidence            456899999998863222   223446789999999999984 4321      12223333 4799999999987653  


Q ss_pred             cccccCCCCCCCeEEEecCCCCcccc--C--CCCCCCccEEEEecCC-CCcc--cccccccCCCCCcCeEEEccCCCcce
Q 038658          640 LPQSLLSLSSLREIEIYNCSSFVSFP--E--VALPSKVRSISIHRCD-ALKS--LPEAWMCDANLSLEILTISRCHSLTY  712 (831)
Q Consensus       640 l~~~l~~l~~L~~L~L~~~~~l~~l~--~--~~~~~~L~~L~l~~c~-~l~~--l~~~~~~~~l~~L~~L~l~~c~~l~~  712 (831)
                      +.....++++|++|++++|..++.-.  .  ....++|+.|++++|. .++.  +......  +++|++|++++|+.++.
T Consensus       113 l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~--~~~L~~L~L~~~~~itd  190 (284)
T d2astb2         113 LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR--CPNLVHLDLSDSVMLKN  190 (284)
T ss_dssp             HHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH--CTTCSEEECTTCTTCCG
T ss_pred             cchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccc--cccccccccccccCCCc
Confidence            23334568999999999998775321  1  1126799999999874 3443  2222333  89999999999998864


Q ss_pred             e--ccCCCCCCCceEEEecCCCCCccccccCccCCcccccCccccceEEEecC
Q 038658          713 I--AEVQLPPSLKNVVIRNCDNVRTLTVEEGIQSSSSRRYTSSLLEHLHIESC  763 (831)
Q Consensus       713 l--~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~l~~~~L~~L~i~~c  763 (831)
                      -  ......++|++|++++|+.++.-. ...+..     +++  |++|++.+|
T Consensus       191 ~~~~~l~~~~~L~~L~L~~C~~i~~~~-l~~L~~-----~~~--L~~L~l~~~  235 (284)
T d2astb2         191 DCFQEFFQLNYLQHLSLSRCYDIIPET-LLELGE-----IPT--LKTLQVFGI  235 (284)
T ss_dssp             GGGGGGGGCTTCCEEECTTCTTCCGGG-GGGGGG-----CTT--CCEEECTTS
T ss_pred             hhhhhhcccCcCCEEECCCCCCCChHH-HHHHhc-----CCC--CCEEeeeCC
Confidence            2  222445799999999999987542 223333     677  999999998

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=2.1e-11  Score=118.35  Aligned_cols=95  Identities=23%  Similarity=0.280  Sum_probs=72.8

Q ss_pred             EEEEeCCCCccccCccccCCCCCceeecCCCCCCccch-hhhccCCccEEeecCcCccccccc-cccCcccccccccCCC
Q 038658          195 RVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPE-SVNKLYNLHTLSLEGCRGLRKLCA-GMGNLIKLHHLNNSNT  272 (831)
Q Consensus       195 ~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~l~~~  272 (831)
                      ++++.++..++.+|..+.  .++++|++++|.|+.+|. ++.++++|++|++++|.....+|. .+..+++++++.+..+
T Consensus        11 ~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             CEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            688888888999998764  589999999999999986 579999999999999876665544 4788899999887665


Q ss_pred             CCccccc-CCCCCccccccc
Q 038658          273 DSLEEMP-LGIGKLTCLQTL  291 (831)
Q Consensus       273 ~~~~~~p-~~~~~L~~L~~L  291 (831)
                      ..+..++ ..+..+++|+++
T Consensus        89 n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          89 NNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             TTCCEECTTSEECCTTCCEE
T ss_pred             cccccccccccccccccccc
Confidence            4344443 335666666655

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.26  E-value=1.2e-11  Score=115.54  Aligned_cols=119  Identities=19%  Similarity=0.290  Sum_probs=89.1

Q ss_pred             ccCCcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccC
Q 038658          159 YNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLY  238 (831)
Q Consensus       159 ~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~  238 (831)
                      .++++++.|.+.+..      +.  -.+++..+++|++|++++|.++.++. ++++++|++|++++|.+..+| .+++++
T Consensus        37 ~~l~~l~~L~l~~~~------i~--~l~~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~  106 (199)
T d2omxa2          37 TDLDQVTTLQADRLG------IK--SIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-PLANLT  106 (199)
T ss_dssp             HHHTTCCEEECTTSC------CC--CCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCT
T ss_pred             HHhcCCCEEECCCCC------CC--CccccccCCCcCcCccccccccCccc-ccCCccccccccccccccccc-cccccc
Confidence            345677777554322      11  12345678999999999999998864 899999999999999998886 488999


Q ss_pred             CccEEeecCcCccccccccccCcccccccccCCCCCcccccCCCCCccccccc
Q 038658          239 NLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTL  291 (831)
Q Consensus       239 ~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L  291 (831)
                      +|+.|++++|.... + ..+..+++|+.|++++|. +..+| .+..+++|+.|
T Consensus       107 ~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~n~-l~~~~-~l~~~~~L~~L  155 (199)
T d2omxa2         107 NLTGLTLFNNQITD-I-DPLKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQL  155 (199)
T ss_dssp             TCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSC-CCCCG-GGTTCTTCSEE
T ss_pred             cccccccccccccc-c-cccchhhhhHHhhhhhhh-hcccc-ccccccccccc
Confidence            99999999876433 3 348889999999999987 44444 45666666655

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.26  E-value=4.2e-12  Score=107.61  Aligned_cols=93  Identities=26%  Similarity=0.308  Sum_probs=56.8

Q ss_pred             EEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcccccccccCCCCC
Q 038658          195 RVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDS  274 (831)
Q Consensus       195 ~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~  274 (831)
                      |+|+|++|.++.++ .++.+++|++|++++|.|+++|+.++.+++|++|++++|. +..+| +++.+++|++|++++|. 
T Consensus         1 R~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~-i~~l~-~~~~l~~L~~L~l~~N~-   76 (124)
T d1dcea3           1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNNR-   76 (124)
T ss_dssp             SEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSSC-
T ss_pred             CEEEcCCCCCCCCc-ccccCCCCCEEECCCCccCcchhhhhhhhccccccccccc-ccccC-ccccccccCeEECCCCc-
Confidence            46666666666664 3666666666666666666666666666666666666654 44554 36666666666666665 


Q ss_pred             ccccc--CCCCCccccccc
Q 038658          275 LEEMP--LGIGKLTCLQTL  291 (831)
Q Consensus       275 ~~~~p--~~~~~L~~L~~L  291 (831)
                      +..+|  ..++.+++|+.|
T Consensus        77 i~~~~~~~~l~~~~~L~~L   95 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLL   95 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEE
T ss_pred             cCCCCCchhhcCCCCCCEE
Confidence            44343  234555555555

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.23  E-value=7.9e-12  Score=105.86  Aligned_cols=86  Identities=23%  Similarity=0.261  Sum_probs=76.8

Q ss_pred             ccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCcccccc--ccccCccc
Q 038658          186 PKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLC--AGMGNLIK  263 (831)
Q Consensus       186 ~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp--~~i~~L~~  263 (831)
                      +.+..+++|++|++++|.++.+|.+++.+++|++|++++|.|+.+| .++++++|++|++++|. +..+|  ..++.+++
T Consensus        14 ~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~~~~   91 (124)
T d1dcea3          14 CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR-LQQSAAIQPLVSCPR   91 (124)
T ss_dssp             CCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTT
T ss_pred             cccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCc-cCCCCCchhhcCCCC
Confidence            3566889999999999999999999999999999999999999997 59999999999999976 55554  45889999


Q ss_pred             ccccccCCCC
Q 038658          264 LHHLNNSNTD  273 (831)
Q Consensus       264 L~~L~l~~~~  273 (831)
                      |++|++++|.
T Consensus        92 L~~L~l~~N~  101 (124)
T d1dcea3          92 LVLLNLQGNS  101 (124)
T ss_dssp             CCEEECTTSG
T ss_pred             CCEEECCCCc
Confidence            9999999998

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1e-11  Score=110.88  Aligned_cols=129  Identities=19%  Similarity=0.084  Sum_probs=89.3

Q ss_pred             cccccCCcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhh-
Q 038658          156 EDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESV-  234 (831)
Q Consensus       156 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i-  234 (831)
                      +.+.+..++|.|.+.+      +.+ ..++..+..+++|++|+|++|.|+.++ .|..+++|++|++++|.++.+|+.+ 
T Consensus        12 ~~~~n~~~lr~L~L~~------n~I-~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~   83 (162)
T d1a9na_          12 AQYTNAVRDRELDLRG------YKI-PVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLD   83 (162)
T ss_dssp             CEEECTTSCEEEECTT------SCC-CSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHH
T ss_pred             HhccCcCcCcEEECCC------CCC-CccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCcccc
Confidence            4455667777775443      222 233332336788888888888888874 5788888888888888888887654 


Q ss_pred             hccCCccEEeecCcCccccccc--cccCcccccccccCCCCCcccccC----CCCCccccccccce
Q 038658          235 NKLYNLHTLSLEGCRGLRKLCA--GMGNLIKLHHLNNSNTDSLEEMPL----GIGKLTCLQTLCNF  294 (831)
Q Consensus       235 ~~L~~L~~L~l~~~~~~~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~----~~~~L~~L~~L~~~  294 (831)
                      ..+++|++|++++|. +..++.  .+..+++|++|++++|. +...|.    .++.+++|+.|+..
T Consensus        84 ~~l~~L~~L~L~~N~-i~~~~~l~~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          84 QALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             HHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             ccccccccceecccc-ccccccccccccccccchhhcCCCc-cccccchHHHHHHHCCCcCeeCCC
Confidence            678888888888875 444443  47788888888888887 555553    26667777777443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1.2e-11  Score=110.50  Aligned_cols=102  Identities=25%  Similarity=0.292  Sum_probs=85.8

Q ss_pred             cccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCcccccccc-ccCccccc
Q 038658          187 KLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAG-MGNLIKLH  265 (831)
Q Consensus       187 ~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~  265 (831)
                      .+.++..+|.|+|++|.|+.+|..+..+.+|++|+|++|.|++++ .+..+++|++|++++|. +..+|.+ +..+++|+
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~-i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCC
T ss_pred             hccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhccccc-ccCCCccccccccccc
Confidence            345778899999999999999877788999999999999999995 58999999999999987 5666655 56899999


Q ss_pred             ccccCCCCCcccccC--CCCCccccccc
Q 038658          266 HLNNSNTDSLEEMPL--GIGKLTCLQTL  291 (831)
Q Consensus       266 ~L~l~~~~~~~~~p~--~~~~L~~L~~L  291 (831)
                      +|++++|. +..++.  .+..+++|++|
T Consensus        91 ~L~L~~N~-i~~~~~l~~l~~l~~L~~L  117 (162)
T d1a9na_          91 ELILTNNS-LVELGDLDPLASLKSLTYL  117 (162)
T ss_dssp             EEECCSCC-CCCGGGGGGGGGCTTCCEE
T ss_pred             cceecccc-ccccccccccccccccchh
Confidence            99999998 555553  46677777777

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.11  E-value=5e-11  Score=110.53  Aligned_cols=80  Identities=16%  Similarity=0.179  Sum_probs=40.5

Q ss_pred             ceEEEEeCCCCccc-c-CccccCCCCCceeecCCCCCCccc-hhhhccCCccEEeecCcCccccc-cccccCcccccccc
Q 038658          193 RLRVFSLCGYWISE-L-PDSIGDLRYLRYLNLSGTQIRTLP-ESVNKLYNLHTLSLEGCRGLRKL-CAGMGNLIKLHHLN  268 (831)
Q Consensus       193 ~L~~L~L~~~~i~~-l-p~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~l-p~~i~~L~~L~~L~  268 (831)
                      ++++|+|++|.|+. + +..|..+++|+.|+|++|.+..++ ..+..+++|++|++++|. +..+ |..|.++++|++|+
T Consensus        30 ~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~-l~~l~~~~F~~l~~L~~L~  108 (192)
T d1w8aa_          30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEEE
T ss_pred             CCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccc-ccccCHHHHhCCCcccccc
Confidence            45555555555543 2 234455555555555555555442 344555555555555543 2333 23355555555555


Q ss_pred             cCCCC
Q 038658          269 NSNTD  273 (831)
Q Consensus       269 l~~~~  273 (831)
                      |++|.
T Consensus       109 L~~N~  113 (192)
T d1w8aa_         109 LYDNQ  113 (192)
T ss_dssp             CCSSC
T ss_pred             cCCcc
Confidence            55555

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.99  E-value=3.9e-10  Score=104.36  Aligned_cols=106  Identities=20%  Similarity=0.240  Sum_probs=78.7

Q ss_pred             CcceEEccccccCCCccccccccccccc-CCcceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCCccch-hhhccC
Q 038658          162 QHLRTFLPVCLSNSSQGFLAHSILPKLF-KLQRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTLPE-SVNKLY  238 (831)
Q Consensus       162 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~  238 (831)
                      +++++|.+      +.|.+...++...| .+++|+.|+|++|.+..+ +..+..+++|++|+|++|+|+.+|+ .|.+++
T Consensus        29 ~~l~~L~L------s~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~  102 (192)
T d1w8aa_          29 LHTTELLL------NDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLH  102 (192)
T ss_dssp             TTCSEEEC------CSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCT
T ss_pred             CCCCEEEe------CCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCC
Confidence            46666644      33455444555554 788888888888888776 5677888888888888888888864 578888


Q ss_pred             CccEEeecCcCccccc-cccccCcccccccccCCCCC
Q 038658          239 NLHTLSLEGCRGLRKL-CAGMGNLIKLHHLNNSNTDS  274 (831)
Q Consensus       239 ~L~~L~l~~~~~~~~l-p~~i~~L~~L~~L~l~~~~~  274 (831)
                      +|++|+|++|. +..+ |..|..+++|++|++++|..
T Consensus       103 ~L~~L~L~~N~-l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_         103 QLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             TCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             cccccccCCcc-ccccCHHHhcCCccccccccccccc
Confidence            88888888876 4444 44578888888888888863

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=4.2e-12  Score=136.92  Aligned_cols=84  Identities=20%  Similarity=0.250  Sum_probs=47.7

Q ss_pred             CCcceEEEEeCCCCcc-----ccCccccCCCCCceeecCCCCCCc-----cchhhh-ccCCccEEeecCcCccc----cc
Q 038658          190 KLQRLRVFSLCGYWIS-----ELPDSIGDLRYLRYLNLSGTQIRT-----LPESVN-KLYNLHTLSLEGCRGLR----KL  254 (831)
Q Consensus       190 ~l~~L~~L~L~~~~i~-----~lp~~~~~l~~Lr~L~L~~~~i~~-----lp~~i~-~L~~L~~L~l~~~~~~~----~l  254 (831)
                      .++++++|+|++|.++     .+...+..+++|++|||++|.|+.     +...+. ...+|++|++++|....    .+
T Consensus        25 ~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l  104 (460)
T d1z7xw1          25 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL  104 (460)
T ss_dssp             HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             hCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccc
Confidence            5666677777777654     234445566677777777766642     112221 12357777777664321    13


Q ss_pred             cccccCcccccccccCCCC
Q 038658          255 CAGMGNLIKLHHLNNSNTD  273 (831)
Q Consensus       255 p~~i~~L~~L~~L~l~~~~  273 (831)
                      +..+..+++|++|++++|.
T Consensus       105 ~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1         105 SSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             HHHTTSCTTCCEEECCSSB
T ss_pred             cchhhcccccccccccccc
Confidence            4445666677777776665

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=4.2e-12  Score=136.98  Aligned_cols=110  Identities=15%  Similarity=0.125  Sum_probs=60.9

Q ss_pred             CeeEEEEEccccCccccccccccCCcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCccc-----cCcccc
Q 038658          138 NLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISE-----LPDSIG  212 (831)
Q Consensus       138 ~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~-----lp~~~~  212 (831)
                      +++.+.+.++.+....-.+-+..++++++|.+.++.- ... -...+...+..+++|++|||++|.|+.     +...+.
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i-~~~-~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL-TEA-RCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCC-CHH-HHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCC-CHH-HHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence            3455666665544322223345567777776554321 000 001223334467778888887777652     223332


Q ss_pred             -CCCCCceeecCCCCCCc-----cchhhhccCCccEEeecCcC
Q 038658          213 -DLRYLRYLNLSGTQIRT-----LPESVNKLYNLHTLSLEGCR  249 (831)
Q Consensus       213 -~l~~Lr~L~L~~~~i~~-----lp~~i~~L~~L~~L~l~~~~  249 (831)
                       ...+|++|+|++|.++.     ++..+..+++|++|++++|.
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhcccccccccccccc
Confidence             23467888888777753     34566677778888887765

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.86  E-value=1.3e-11  Score=114.58  Aligned_cols=102  Identities=22%  Similarity=0.277  Sum_probs=64.5

Q ss_pred             ccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCccccc
Q 038658          186 PKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLH  265 (831)
Q Consensus       186 ~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~  265 (831)
                      ..+..+++|++|+|++|.|+.++ .+..+++|++|+|++|.|+.+|.....+.+|++|++++|. +..++ .+..+++|+
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~-i~~l~-~~~~l~~L~  118 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS-GIEKLVNLR  118 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEE-CCCHH-HHHHHHHSS
T ss_pred             hHHhcccccceeECcccCCCCcc-cccCCccccChhhccccccccccccccccccccccccccc-ccccc-ccccccccc
Confidence            34456677777777777777764 4667777777777777777776655666677777777764 44443 366777777


Q ss_pred             ccccCCCCCccccc--CCCCCccccccc
Q 038658          266 HLNNSNTDSLEEMP--LGIGKLTCLQTL  291 (831)
Q Consensus       266 ~L~l~~~~~~~~~p--~~~~~L~~L~~L  291 (831)
                      +|++++|. +..++  ..++.+++|+.|
T Consensus       119 ~L~L~~N~-i~~~~~~~~l~~l~~L~~L  145 (198)
T d1m9la_         119 VLYMSNNK-ITNWGEIDKLAALDKLEDL  145 (198)
T ss_dssp             EEEESEEE-CCCHHHHHHHTTTTTCSEE
T ss_pred             ccccccch-hccccccccccCCCcccee
Confidence            77777765 33333  124444444444

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.81  E-value=4.1e-11  Score=111.08  Aligned_cols=128  Identities=20%  Similarity=0.236  Sum_probs=97.2

Q ss_pred             cccccCCcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhh
Q 038658          156 EDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVN  235 (831)
Q Consensus       156 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~  235 (831)
                      ..+..+++|+.|.+.      ++.+. .+ +.+..+++|++|++++|.++.+|..+..+.+|++|++++|.++.++ .+.
T Consensus        42 ~sl~~L~~L~~L~Ls------~n~I~-~i-~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~  112 (198)
T d1m9la_          42 ATLSTLKACKHLALS------TNNIE-KI-SSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIE  112 (198)
T ss_dssp             HHHHHTTTCCEEECS------EEEES-CC-CCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHH-HHH
T ss_pred             hHHhcccccceeECc------ccCCC-Cc-ccccCCccccChhhcccccccccccccccccccccccccccccccc-ccc
Confidence            356778899998553      33443 33 3566899999999999999999876667788999999999999885 588


Q ss_pred             ccCCccEEeecCcCcccccc--ccccCcccccccccCCCCCcccccCC----------CCCccccccccc
Q 038658          236 KLYNLHTLSLEGCRGLRKLC--AGMGNLIKLHHLNNSNTDSLEEMPLG----------IGKLTCLQTLCN  293 (831)
Q Consensus       236 ~L~~L~~L~l~~~~~~~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~~----------~~~L~~L~~L~~  293 (831)
                      .+++|++|++++|. +..++  ..+..+++|+.|++++|......+..          +..+++|+.|+.
T Consensus       113 ~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD~  181 (198)
T d1m9la_         113 KLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG  181 (198)
T ss_dssp             HHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEESS
T ss_pred             ccccccccccccch-hccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeCC
Confidence            99999999999975 55554  35889999999999999733332221          345666666643

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=5.1e-09  Score=92.34  Aligned_cols=90  Identities=19%  Similarity=0.144  Sum_probs=69.4

Q ss_pred             cccccccCCcceEEEEeCCCC-ccccC-ccccCCCCCceeecCCCCCCccc-hhhhccCCccEEeecCcCcccccccccc
Q 038658          183 SILPKLFKLQRLRVFSLCGYW-ISELP-DSIGDLRYLRYLNLSGTQIRTLP-ESVNKLYNLHTLSLEGCRGLRKLCAGMG  259 (831)
Q Consensus       183 ~~~~~~~~l~~L~~L~L~~~~-i~~lp-~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~i~  259 (831)
                      ..|..+..+++|+.|+++++. ++.++ .+|..+++|++|+|++|+|+.++ .++..+++|++|+|++|. ++.+|.++.
T Consensus        22 ~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~  100 (156)
T d2ifga3          22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTV  100 (156)
T ss_dssp             TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-CSCCCSTTT
T ss_pred             cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCC-CcccChhhh
Confidence            445666677888888887664 88774 56888888888888888888884 567888888888888875 667777655


Q ss_pred             CcccccccccCCCC
Q 038658          260 NLIKLHHLNNSNTD  273 (831)
Q Consensus       260 ~L~~L~~L~l~~~~  273 (831)
                      ...+|++|++++|.
T Consensus       101 ~~~~l~~L~L~~Np  114 (156)
T d2ifga3         101 QGLSLQELVLSGNP  114 (156)
T ss_dssp             CSCCCCEEECCSSC
T ss_pred             ccccccccccCCCc
Confidence            55578888888886

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=2.5e-08  Score=87.74  Aligned_cols=98  Identities=17%  Similarity=0.104  Sum_probs=81.7

Q ss_pred             cceEEEEeCCCCccccCccccCCCCCceeecCCC-CCCccc-hhhhccCCccEEeecCcCccccc-cccccCcccccccc
Q 038658          192 QRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGT-QIRTLP-ESVNKLYNLHTLSLEGCRGLRKL-CAGMGNLIKLHHLN  268 (831)
Q Consensus       192 ~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~-~i~~lp-~~i~~L~~L~~L~l~~~~~~~~l-p~~i~~L~~L~~L~  268 (831)
                      ....+++.+++.+...|..+..+++|+.|+++++ .++.++ .+|.++++|+.|++++|. +..+ |..|..+++|++|+
T Consensus         8 ~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEE
T ss_pred             CCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccc-cCCccccccccccccccee
Confidence            3445688899999999999999999999999876 599886 568999999999999986 5555 56699999999999


Q ss_pred             cCCCCCcccccCCCCCccccccc
Q 038658          269 NSNTDSLEEMPLGIGKLTCLQTL  291 (831)
Q Consensus       269 l~~~~~~~~~p~~~~~L~~L~~L  291 (831)
                      +++|. ++.+|.++-...+|+.|
T Consensus        87 Ls~N~-l~~l~~~~~~~~~l~~L  108 (156)
T d2ifga3          87 LSFNA-LESLSWKTVQGLSLQEL  108 (156)
T ss_dssp             CCSSC-CSCCCSTTTCSCCCCEE
T ss_pred             ccCCC-CcccChhhhcccccccc
Confidence            99999 77888775555567776

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.28  E-value=1.7e-08  Score=103.05  Aligned_cols=88  Identities=22%  Similarity=0.171  Sum_probs=55.0

Q ss_pred             ccccCCcceEEEEeCCCCcc-----ccCccccCCCCCceeecCCCCCCc-----------cchhhhccCCccEEeecCcC
Q 038658          186 PKLFKLQRLRVFSLCGYWIS-----ELPDSIGDLRYLRYLNLSGTQIRT-----------LPESVNKLYNLHTLSLEGCR  249 (831)
Q Consensus       186 ~~~~~l~~L~~L~L~~~~i~-----~lp~~~~~l~~Lr~L~L~~~~i~~-----------lp~~i~~L~~L~~L~l~~~~  249 (831)
                      ..+.....|+.|+|++|.+.     .+-..+...++|+.|+++++....           +...+...++|+.|++++|.
T Consensus        25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~  104 (344)
T d2ca6a1          25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  104 (344)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc
Confidence            33445677778888877764     233455677788888887664432           12334556778888888765


Q ss_pred             ccc----cccccccCcccccccccCCCC
Q 038658          250 GLR----KLCAGMGNLIKLHHLNNSNTD  273 (831)
Q Consensus       250 ~~~----~lp~~i~~L~~L~~L~l~~~~  273 (831)
                      ...    .+...+...++|++|++++|.
T Consensus       105 i~~~~~~~l~~~l~~~~~L~~L~l~~n~  132 (344)
T d2ca6a1         105 FGPTAQEPLIDFLSKHTPLEHLYLHNNG  132 (344)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             cccccccchhhhhcccccchheeccccc
Confidence            322    233445566778888887775

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.21  E-value=8.3e-08  Score=97.78  Aligned_cols=87  Identities=13%  Similarity=0.132  Sum_probs=58.0

Q ss_pred             ccccCCcceEEccccccCCCccccccc----ccccccCCcceEEEEeCCCCccc-----------cCccccCCCCCceee
Q 038658          157 DLYNIQHLRTFLPVCLSNSSQGFLAHS----ILPKLFKLQRLRVFSLCGYWISE-----------LPDSIGDLRYLRYLN  221 (831)
Q Consensus       157 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~----~~~~~~~l~~L~~L~L~~~~i~~-----------lp~~~~~l~~Lr~L~  221 (831)
                      .+.+...++.|.+.+      +.+...    +...+...+.|+.|+++++....           +...+...++|+.|+
T Consensus        26 ~L~~~~~l~~L~Ls~------n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~   99 (344)
T d2ca6a1          26 VLLEDDSVKEIVLSG------NTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR   99 (344)
T ss_dssp             HHHHCSCCCEEECTT------SEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred             HHhhCCCCCEEECcC------CcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccc
Confidence            455667777775432      333322    22334477889999998765432           223456778899999


Q ss_pred             cCCCCCCc-----cchhhhccCCccEEeecCcC
Q 038658          222 LSGTQIRT-----LPESVNKLYNLHTLSLEGCR  249 (831)
Q Consensus       222 L~~~~i~~-----lp~~i~~L~~L~~L~l~~~~  249 (831)
                      |++|.+..     +...+...++|++|++++|.
T Consensus       100 L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~  132 (344)
T d2ca6a1         100 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG  132 (344)
T ss_dssp             CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             ccccccccccccchhhhhcccccchheeccccc
Confidence            99998763     45566778899999999875

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=2.8e-06  Score=74.91  Aligned_cols=60  Identities=25%  Similarity=0.329  Sum_probs=33.2

Q ss_pred             CCcceEEEEeCCCCccccC---ccccCCCCCceeecCCCCCCccch-hhhccCCccEEeecCcC
Q 038658          190 KLQRLRVFSLCGYWISELP---DSIGDLRYLRYLNLSGTQIRTLPE-SVNKLYNLHTLSLEGCR  249 (831)
Q Consensus       190 ~l~~L~~L~L~~~~i~~lp---~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~  249 (831)
                      .++.|++|+|++|+|+.++   ..+..+++|++|+|++|.|+.+++ ...+..+|+.|++++|.
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Np  126 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNS  126 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTST
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCC
Confidence            5566666666666665542   334556666666666666665543 12223345555555554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=1.4e-06  Score=76.84  Aligned_cols=92  Identities=22%  Similarity=0.131  Sum_probs=65.6

Q ss_pred             ccccCccccCCCCCceeecCCCCCCcc---chhhhccCCccEEeecCcCccccccc-cccCcccccccccCCCCCccccc
Q 038658          204 ISELPDSIGDLRYLRYLNLSGTQIRTL---PESVNKLYNLHTLSLEGCRGLRKLCA-GMGNLIKLHHLNNSNTDSLEEMP  279 (831)
Q Consensus       204 i~~lp~~~~~l~~Lr~L~L~~~~i~~l---p~~i~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~~~p  279 (831)
                      ...++..+..+++|++|+|++|+|+.+   +..+..+++|++|++++|. +..+++ ...+..+|+.|++++|.......
T Consensus        54 ~~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~-i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~  132 (162)
T d1koha1          54 AATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGLKLEELWLDGNSLSDTFR  132 (162)
T ss_dssp             HHHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSC-CCCGGGHHHHTTCCCSSCCCTTSTTSSSSS
T ss_pred             hhhhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCc-cccchhhhhhhccccceeecCCCCcCcCcc
Confidence            333444446789999999999999876   4567899999999999976 556654 23345579999999998443322


Q ss_pred             C-------CCCCccccccccceEe
Q 038658          280 L-------GIGKLTCLQTLCNFVV  296 (831)
Q Consensus       280 ~-------~~~~L~~L~~L~~~~~  296 (831)
                      .       -+..+++|+.|+...+
T Consensus       133 ~~~~y~~~i~~~~P~L~~LDg~~v  156 (162)
T d1koha1         133 DQSTYISAIRERFPKLLRLDGHEL  156 (162)
T ss_dssp             SHHHHHHHHHTTSTTCCEETTEEC
T ss_pred             cchhHHHHHHHHCCCCCEECcCCC
Confidence            1       1556788888865443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.13  E-value=0.0014  Score=57.20  Aligned_cols=39  Identities=28%  Similarity=0.330  Sum_probs=16.4

Q ss_pred             CCcceEEEEeCCCCccc-----cCccccCCCCCceeecCCCCCC
Q 038658          190 KLQRLRVFSLCGYWISE-----LPDSIGDLRYLRYLNLSGTQIR  228 (831)
Q Consensus       190 ~l~~L~~L~L~~~~i~~-----lp~~~~~l~~Lr~L~L~~~~i~  228 (831)
                      ..+.|++|+|++|.+..     +...+...+.|++|+|++|.|.
T Consensus        42 ~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          42 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             hCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            33444455555444431     1122333344455555544443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.02  E-value=0.0022  Score=55.94  Aligned_cols=84  Identities=15%  Similarity=0.129  Sum_probs=61.9

Q ss_pred             CCcceEEEEeCCC-Ccc-----ccCccccCCCCCceeecCCCCCC-----ccchhhhccCCccEEeecCcCcccc----c
Q 038658          190 KLQRLRVFSLCGY-WIS-----ELPDSIGDLRYLRYLNLSGTQIR-----TLPESVNKLYNLHTLSLEGCRGLRK----L  254 (831)
Q Consensus       190 ~l~~L~~L~L~~~-~i~-----~lp~~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~~~~----l  254 (831)
                      +.+.|+.|+|+++ .++     .+-..+...++|++|+|++|.+.     .+...+...+.|++|++++|.....    +
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            5578999999874 354     23356678889999999999886     3345667789999999999864322    3


Q ss_pred             cccccCcccccccccCCCC
Q 038658          255 CAGMGNLIKLHHLNNSNTD  273 (831)
Q Consensus       255 p~~i~~L~~L~~L~l~~~~  273 (831)
                      -..+..-+.|++|++++|.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCS
T ss_pred             HHHHHhCCcCCEEECCCCc
Confidence            3446677889999998775

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.84  E-value=0.0073  Score=52.42  Aligned_cols=37  Identities=22%  Similarity=0.351  Sum_probs=16.4

Q ss_pred             cCCCCCceeecCCCCCC-----ccchhhhccCCccEEeecCc
Q 038658          212 GDLRYLRYLNLSGTQIR-----TLPESVNKLYNLHTLSLEGC  248 (831)
Q Consensus       212 ~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~  248 (831)
                      ...++|+.|++++|.+.     .+-..+...+.++.+++++|
T Consensus        43 ~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~   84 (166)
T d1io0a_          43 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN   84 (166)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred             hcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccc
Confidence            34444555555555443     11223344445555555444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.25  E-value=0.016  Score=50.19  Aligned_cols=113  Identities=17%  Similarity=0.131  Sum_probs=62.1

Q ss_pred             cCCcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCccc-----cCccccCCCCCceeecCCCCCC-----c
Q 038658          160 NIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISE-----LPDSIGDLRYLRYLNLSGTQIR-----T  229 (831)
Q Consensus       160 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~-----lp~~~~~l~~Lr~L~L~~~~i~-----~  229 (831)
                      +.+.|+.|.+.+....+.. ....+...+...++|+.|++++|.++.     +-..+...+.|+.+++++|.+.     .
T Consensus        15 ~~~~L~~L~L~~~~~i~~~-~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVP-TLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHH-HHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHH-HHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            4567777755432211000 011123333366778888888887652     2344556677888888887765     2


Q ss_pred             cchhhhccCCccEEeecCcC-cc-----ccccccccCcccccccccCCCC
Q 038658          230 LPESVNKLYNLHTLSLEGCR-GL-----RKLCAGMGNLIKLHHLNNSNTD  273 (831)
Q Consensus       230 lp~~i~~L~~L~~L~l~~~~-~~-----~~lp~~i~~L~~L~~L~l~~~~  273 (831)
                      +-..+...++|+.++|+.+. .+     ..+...+.+.++|+.|+++.+.
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            33556667777776665322 11     1233445566677777766543