Citrus Sinensis ID: 038667

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-

LIHRDSILSPYNNPNENPAHRVQRGINISIARLAYLQEKIRSHNTYQAQILPSNDISNSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYPSRSSSYAYVPCDSEHCRYFPYARCSAYKHRCIYTQLYLIGPETSVFVSTEQLTFKNTDESTIHVQDVVFGCGFSTNRNFKFSGIFGLGIGRSSLVSQLNSSFSYCIGSLHDPDYLHNKLILGDGAIIDEGDATPLQFIDGHYYITLEAISVDGRMLDINPNIFKRDDSGGGVMIDSGTDVTWLVKEAYEALRDEVMIRLEGEQMRSYSWPDKLCYHGIMSSDLKGFPTVRFHFRGGAKLALEKDSMFYQPRPDAFCMAVNPASINNRYVNFSLIGMMAQQFYNVGYDIGRKQKTFQRMDCEVLDDD

cccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEEEcccccEEEEEEEccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccEEEEEEEEEEEEEcccccccEEEccEEEEccccccccccccEEEcccccccHHHHHHcccccEEEcccccccccccEEEEccccccccccccccccccccEEEEEEEEEEccEEEcccccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHcccccccccccccccEEEcccccccccccEEEEEEcccEEEEccccEEEEEccccEEEEEEEcccccccccEEEEEEEEEEEEEEEEEccccEEEEEcccccccccc

cccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEEEccccccEEEEEEccccEEEEEccccHHHHccccccccccccccccccccccHHHHHccccccccccccEEEEEEEcccccccEEEEEEEEEEccccccccEcccEEEEEcccccccccccEEEEccccccEEHHcccccEEEEEcccccccccccEEEEcccccccccEEEEccccccEEEEEEEEEEEccEEEccccHHEEccccccEEEEEcccEEEEccHHHHHHHHHHHHHHHcccccccccccccccEccccccccccccEEEEEEEcccEEEcccccEEEEEcccEEEEEEEccccccccccEEEEEEEEEccEEEEEEccccEEEEccccHHHHccc

lihrdsilspynnpnenpahrvqRGINISIARLAYLQEKIRShntyqaqilpsndisnsLFYVNisigqppvpqftamdtgssllwvhcypcrdcspqlgtifypsrsssyayvpcdsehcryfpyarcsaykhrciytqlyligpetsvfvsteqltfkntdestihVQDVVFgcgfstnrnfkfsgifglgigRSSLVSQLNSSFsycigslhdpdylhnklilgdgaiidegdatplqfidgHYYITLEAIsvdgrmldinpnifkrddsgggvmidsgtDVTWLVKEAYEALRDEVMIRLEGeqmrsyswpdklcyhgimssdlkgfptvrfhfrggaklalekdsmfyqprpdafcmavnpasinnrYVNFSLIGMMAQQFYNvgydigrkqktfqrmdcevlddd

lihrdsilspynnpnenpahrvQRGINISIARLAYLQEKIRSHNTYQAQILPSNDISNSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYPSRSSSYAYVPCDSEHCRYFPYARCSAYKHRCIYTQLYLIGPETSVFVSTEQLTfkntdestiHVQDVVFGCGFSTNRNFKFSGIFGLGIGRSSLVSQLNSSFSYCIGSLHDPDYLHNKLILGDGAIIDEGDATPLQFIDGHYYITLEAISVDGRMLDINPNifkrddsgggvmidsgtdVTWLVKEAYEALRDEVMIRLEGEQMRSYSWPDKLCYHGIMSSDLKGFPTVRFHFRGGAKLALEKDSMFYQPRPDAFCMAVNPASINNRYVNFSLIGMMAQQFYNVGYDIGRKQKtfqrmdcevlddd

LIHRDSILSPYNNPNENPAHRVQRGINISIARLAYLQEKIRSHNTYQAQILPSNDISNSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYPSRSSSYAYVPCDSEHCRYFPYARCSAYKHRCIYTQLYLIGPETSVFVSTEQLTFKNTDESTIHVQDVVFGCGFSTNRNFKFSGIFGLGIGRsslvsqlnssfsYCIGSLHDPDYLHNKLILGDGAIIDEGDATPLQFIDGHYYITLEAISVDGRMLDINPNIFKRDDSGGGVMIDSGTDVTWLVKEAYEALRDEVMIRLEGEQMRSYSWPDKLCYHGIMSSDLKGFPTVRFHFRGGAKLALEKDSMFYQPRPDAFCMAVNPASINNRYVNFSLIGMMAQQFYNVGYDIGRKQKTFQRMDCEVLDDD

*********************VQRGINISIARLAYLQEKIRSHNTYQAQILPSNDISNSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYPSRSSSYAYVPCDSEHCRYFPYARCSAYKHRCIYTQLYLIGPETSVFVSTEQLTFKNTDESTIHVQDVVFGCGFSTNRNFKFSGIFGLGIGRSSLVSQLNSSFSYCIGSLHDPDYLHNKLILGDGAIIDEGDATPLQFIDGHYYITLEAISVDGRMLDINPNIFKRDDSGGGVMIDSGTDVTWLVKEAYEALRDEVMIRLEGEQMRSYSWPDKLCYHGIMSSDLKGFPTVRFHFRGGAKLALEKDSMFYQPRPDAFCMAVNPASINNRYVNFSLIGMMAQQFYNVGYDIGRKQKTFQRM********

LIHRDS*********************I**************************DISNSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYP*RSSSYAYVPCDSEHCR*F**********RCIYTQLYLIGPETSVFVSTEQLTFKNTDESTIHVQDVVFGCGFSTNRNFKFSGIFGLGIGRSSLVSQLNSSFSYCIGSLH*******KLILGDGAIIDEGDATPLQFIDGHYYITLEAISVDGRMLDINPNIFKRDDSGGGVMIDSGTDVTWLVKEAYEALRDEVMI**********SWPDKLCYHGIMSSDLKGFPTVRFHFRGGAKLALEKDSMFYQPRPDAFCMAVNPASINNRYVNFSLIGMMAQQFYNVGYDIGRKQKTFQRMDCEVL***

*****SILSPYNNPNENPAHRVQRGINISIARLAYLQEKI*************NDISNSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYPSRSSSYAYVPCDSEHCRYFPYARCSAYKHRCIYTQLYLIGPETSVFVSTEQLTFKNTDESTIHVQDVVFGCGFSTNRNFKFSGIFGLGIGRSSLVSQLNSSFSYCIGSLHDPDYLHNKLILGDGAIIDEGDATPLQFIDGHYYITLEAISVDGRMLDINPNIFKRDDSGGGVMIDSGTDVTWLVKEAYEALRDEVMIRLEGEQMRSYSWPDKLCYHGIMSSDLKGFPTVRFHFRGGAKLALEKDSMFYQPRPDAFCMAVNPASINNRYVNFSLIGMMAQQFYNVGYDIGRKQKTFQRMDCE*****

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		411	2.2.26 [Sep-21-2011]
Q6XBF8		437	Aspartic proteinase CDR1	no	no	0.948	0.892	0.342	2e-45
Q766C3		437	Aspartic proteinase nepen	N/A	no	0.800	0.752	0.334	9e-40
Q3EBM5		447	Probable aspartic proteas	no	no	0.946	0.870	0.304	6e-38
Q766C2		438	Aspartic proteinase nepen	N/A	no	0.802	0.753	0.315	6e-37
Q9LS40		500	Protein ASPARTIC PROTEASE	no	no	0.773	0.636	0.320	3e-31
Q9LHE3		470	Protein ASPARTIC PROTEASE	no	no	0.897	0.785	0.287	1e-24
Q9LZL3		453	Aspartic proteinase PCS1	no	no	0.768	0.697	0.290	8e-23
Q9S9K4		475	Aspartic proteinase-like	no	no	0.761	0.658	0.244	5e-20
A2ZC67		410	Aspartic proteinase Asp1	N/A	no	0.552	0.553	0.277	3e-12
Q9LX20		528	Aspartic proteinase-like	no	no	0.688	0.535	0.263	1e-11

>sp\|Q6XBF8\|CDR1_ARATH Aspartic proteinase CDR1 OS=Arabidopsis thaliana GN=CDR1 PE=1 SV=1	Back alignment and function desciption

 Score =  183 bits (465), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 144/421 (34%), Positives = 205/421 (48%), Gaps = 31/421 (7%)

Query: 1   LIHRDSILSPYNNPNENPAHRVQRGINISIARLAYLQEKIRSHNTYQAQI-LPSNDISNS 59
           LIHRDS  SP+ NP E  + R++  I+ S+ R+ +  EK    NT Q QI L SN   + 
Sbjct: 35  LIHRDSPKSPFYNPMETSSQRLRNAIHRSVNRVFHFTEK---DNTPQPQIDLTSN---SG 88

Query: 60  LFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYPSRSSSYAYVPCDSE 119
            + +N+SIG PP P     DTGS LLW  C PC DC  Q+  +F P  SS+Y  V C S 
Sbjct: 89  EYLMNVSIGTPPFPIMAIADTGSDLLWTQCAPCDDCYTQVDPLFDPKTSSTYKDVSCSSS 148

Query: 120 HCRYFP-YARCSAYKHRCIYTQLYLIGPETSVFVSTEQLTFKNTDESTIHVQDVVFGCGF 178
            C      A CS   + C Y+  Y     T   ++ + LT  ++D   + +++++ GCG 
Sbjct: 149 QCTALENQASCSTNDNTCSYSLSYGDNSYTKGNIAVDTLTLGSSDTRPMQLKNIIIGCGH 208

Query: 179 STNRNF--KFSGIFGLGIGRSSLVSQLNSS----FSYCIGSLHDPDYLHNKLILGDGAII 232
           +    F  K SGI GLG G  SL+ QL  S    FSYC+  L       +K+  G  AI+
Sbjct: 209 NNAGTFNKKGSGIVGLGGGPVSLIKQLGDSIDGKFSYCLVPLTSKKDQTSKINFGTNAIV 268

Query: 233 DEGDATPLQFI-----DGHYYITLEAISVDGRMLDINPNIFKRDDSGGGVMIDSGTDVTW 287
                     I     +  YY+TL++ISV  +   I  +    + S G ++IDSGT +T 
Sbjct: 269 SGSGVVSTPLIAKASQETFYYLTLKSISVGSKQ--IQYSGSDSESSEGNIIIDSGTTLTL 326

Query: 288 LVKEAYEALRDEVMIRLEGEQMRSYSWPDKLCYHGIMSSDLKGFPTVRFHFRGGAKLALE 347
           L  E Y  L D V   ++ E+ +       LCY    + DLK  P +  HF  GA + L+
Sbjct: 327 LPTEFYSELEDAVASSIDAEKKQDPQSGLSLCYSA--TGDLK-VPVITMHFD-GADVKLD 382

Query: 348 KDSMFYQPRPDAFCMAVNPASINNRYVNFSLIGMMAQQFYNVGYDIGRKQKTFQRMDCEV 407
             + F Q   D  C A   +       +FS+ G +AQ  + VGYD   K  +F+  DC  
Sbjct: 383 SSNAFVQVSEDLVCFAFRGSP------SFSIYGNVAQMNFLVGYDTVSKTVSFKPTDCAK 436

Query: 408 L 408
           +
Sbjct: 437 M 437

Involved in salicylic acid-dependent inducible resistance responses. May release an endogenous peptide elicitor required for the activation of inducible resistance mechanisms. Possesses protease activity in vitro.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -

>sp\|Q766C3\|NEP1_NEPGR Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1	Back alignment and function description

>sp\|Q3EBM5\|ASPR1_ARATH Probable aspartic protease At2g35615 OS=Arabidopsis thaliana GN=At2g35615 PE=3 SV=1	Back alignment and function description

>sp\|Q766C2\|NEP2_NEPGR Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1	Back alignment and function description

>sp\|Q9LS40\|ASPG1_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1	Back alignment and function description

>sp\|Q9LHE3\|ASPG2_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana GN=ASPG2 PE=2 SV=1	Back alignment and function description

>sp\|Q9LZL3\|PCS1L_ARATH Aspartic proteinase PCS1 OS=Arabidopsis thaliana GN=PCS1 PE=2 SV=1	Back alignment and function description

>sp\|Q9S9K4\|ASPL2_ARATH Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2	Back alignment and function description

>sp\|A2ZC67\|ASP1_ORYSI Aspartic proteinase Asp1 OS=Oryza sativa subsp. indica GN=ASP1 PE=2 SV=2	Back alignment and function description

>sp\|Q9LX20\|ASPL1_ARATH Aspartic proteinase-like protein 1 OS=Arabidopsis thaliana GN=At5g10080 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		411
255585473		448	Aspartic proteinase nepenthesin-1 precur	0.982	0.901	0.448	6e-96
224091849		438	predicted protein [Populus trichocarpa]	0.948	0.890	0.442	6e-88
297825301		430	hypothetical protein ARALYDRAFT_481251 [	0.982	0.939	0.421	1e-87
296090291		408	unnamed protein product [Vitis vinifera]	0.946	0.953	0.443	7e-87
225446261		440	PREDICTED: aspartic proteinase nepenthes	0.946	0.884	0.443	7e-87
147786881		408	hypothetical protein VITISV_008929 [Viti	0.946	0.953	0.443	9e-87
18400416		458	aspartyl protease family protein [Arabid	0.990	0.888	0.426	9e-87
449516339		456	PREDICTED: probable aspartic protease At	0.982	0.885	0.413	2e-82
356498789		446	PREDICTED: probable aspartic protease At	0.941	0.867	0.432	2e-82
356532674		446	PREDICTED: aspartic proteinase nepenthes	0.958	0.883	0.428	7e-82

>gi\|255585473\|ref\|XP_002533429.1\| Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis] gi\|223526717\|gb\|EEF28949.1\| Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  357 bits (916), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 187/417 (44%), Positives = 260/417 (62%), Gaps = 13/417 (3%)

Query: 1   LIHRDSILSPYNNPNENPAHRVQRGINISIARLAYLQEKIRS---HNTYQAQILPSNDIS 57
           LIH  SILSPY NPN + A R +R +  S  R+AYL  +I+     N ++  +LPS    
Sbjct: 38  LIHWGSILSPYFNPNASVAERAERIVKTSATRIAYLYAQIKGDIHMNDFELNLLPST--Y 95

Query: 58  NSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYPSRSSSYAYVPCD 117
             LF VN S+GQP  PQ   MDTGS++LWV C PC+ C+ Q G +  PS+SS+YA +PC 
Sbjct: 96  EPLFLVNFSMGQPATPQLAIMDTGSNILWVRCAPCKRCTQQNGPLLDPSKSSTYASLPCT 155

Query: 118 SEHCRYFPYARCSAYKHRCIYTQLYLIGPETSVFVSTEQLTFKNTDESTIHVQDVVFGCG 177
           +  C Y P A C+   ++C Y   Y  G  ++  ++TEQL F ++DE    V  VVFGC 
Sbjct: 156 NTMCHYAPSAYCNRL-NQCGYNLSYATGLSSAGVLATEQLIFHSSDEGVNAVPSVVFGCS 214

Query: 178 FSTN--RNFKFSGIFGLGIGRSSLVSQLNSSFSYCIGSLHDPDYLHNKLILGDGAIIDEG 235
                 ++ +F+G+FGLG G +S V+++ S FSYC+G++ DP Y +N+L+ G+ A   EG
Sbjct: 215 HENGDYKDRRFTGVFGLGKGITSFVTRMGSKFSYCLGNIADPHYGYNQLVFGEKANF-EG 273

Query: 236 DATPLQFIDGHYYITLEAISVDGRMLDINPNIFKRDDSGGGVMIDSGTDVTWLVKEAYEA 295
            +TPL+ ++GHYY+TLE ISV  + LDI+   F    +    +IDSGT +TWL + A+ A
Sbjct: 274 YSTPLKVVNGHYYVTLEGISVGEKRLDIDSTAFSMKGNEKSALIDSGTALTWLAESAFRA 333

Query: 296 LRDEVMIRLEGEQMRSYSWPDKL-CYHGIMSSDLKGFPTVRFHFRGGAKLALEKDSMFYQ 354
           L +EV   L+G  M    W     CY G +S DL GFP V FHF GGA L L+ +SMFYQ
Sbjct: 334 LDNEVRQLLDGVLMP--FWRGSFACYKGTVSQDLIGFPVVTFHFSGGADLDLDTESMFYQ 391

Query: 355 PRPDAFCMAVNPASI-NNRYVNFSLIGMMAQQFYNVGYDIGRKQKTFQRMDCEVLDD 410
             PD  C+AV  AS   N + +FS+IG+MAQQ+YN+ YD+   +  FQR+DC++L D
Sbjct: 392 ATPDILCIAVRQASAYGNDFKSFSVIGLMAQQYYNMAYDLNSNKLFFQRIDCQLLVD 448

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224091849\|ref\|XP_002309371.1\| predicted protein [Populus trichocarpa] gi\|222855347\|gb\|EEE92894.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|297825301\|ref\|XP_002880533.1\| hypothetical protein ARALYDRAFT_481251 [Arabidopsis lyrata subsp. lyrata] gi\|297326372\|gb\|EFH56792.1\| hypothetical protein ARALYDRAFT_481251 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|296090291\|emb\|CBI40110.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225446261\|ref\|XP_002265547.1\| PREDICTED: aspartic proteinase nepenthesin-1-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147786881\|emb\|CAN62311.1\| hypothetical protein VITISV_008929 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|18400416\|ref\|NP_565559.1\| aspartyl protease family protein [Arabidopsis thaliana] gi\|20197296\|gb\|AAM15014.1\| predicted protein [Arabidopsis thaliana] gi\|330252412\|gb\|AEC07506.1\| aspartyl protease family protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|449516339\|ref\|XP_004165204.1\| PREDICTED: probable aspartic protease At2g35615-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356498789\|ref\|XP_003518231.1\| PREDICTED: probable aspartic protease At2g35615-like [Glycine max]	Back alignment and taxonomy information

>gi\|356532674\|ref\|XP_003534896.1\| PREDICTED: aspartic proteinase nepenthesin-1-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		411
TAIR\|locus:505006268		458	AT2G23945 [Arabidopsis thalian	0.990	0.888	0.410	5.2e-81
TAIR\|locus:2126495		424	AT4G30030 [Arabidopsis thalian	0.824	0.799	0.443	4.9e-69
TAIR\|locus:2126505		427	AT4G30040 [Arabidopsis thalian	0.929	0.894	0.389	1.4e-62
TAIR\|locus:2145954		437	CDR1 "CONSTITUTIVE DISEASE RES	0.941	0.885	0.330	7.7e-48
TAIR\|locus:2010786		431	AT1G64830 [Arabidopsis thalian	0.944	0.900	0.307	2.5e-42
TAIR\|locus:504955954		447	AT2G35615 [Arabidopsis thalian	0.951	0.874	0.296	7e-38
TAIR\|locus:2035297		485	AT1G01300 [Arabidopsis thalian	0.944	0.8	0.305	6.3e-37
TAIR\|locus:2031225		483	AT1G25510 [Arabidopsis thalian	0.880	0.749	0.317	2.7e-36
TAIR\|locus:2123196		389	UND "UNDEAD" [Arabidopsis thal	0.795	0.840	0.312	3.5e-36
TAIR\|locus:2206184		445	AT1G31450 [Arabidopsis thalian	0.941	0.869	0.304	4.4e-36

TAIR\|locus:505006268 AT2G23945 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 813 (291.2 bits), Expect = 5.2e-81, P = 5.2e-81
 Identities = 174/424 (41%), Positives = 243/424 (57%)

Query:     1 LIHRDSI--LSPYNNPNENPAHRVQRGINISIARLAYLQEKI-RSHNTYQAQILPSNDIS 57
             LIHR+S+  L+P       P   ++   +IS AR  YLQ  I +   +   Q+     I 
Sbjct:    33 LIHRESVARLNPNARVPITPEDHIKHLTDISSARFKYLQNSIDKELGSSNFQVDVEQAIK 92

Query:    58 NSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQ--LGTIFYPSRSSSYAYVP 115
              SLF VN S+GQPPVPQ T MDTGSSLLW+ C PC+ CS    +  +F P+ SS++    
Sbjct:    93 TSLFLVNFSVGQPPVPQLTIMDTGSSLLWIQCQPCKHCSSDHMIHPVFNPALSSTFVECS 152

Query:   116 CDSEHCRYFPYARCSAYKHRCIYTQLYLIGPETSVFVSTEQLTFKNTDESTIHVQDVVFG 175
             CD   CRY P   C +  ++C+Y Q+Y+ G  +   ++ E+LTF   + +T+  Q + FG
Sbjct:   153 CDDRFCRYAPNGHCGS-SNKCVYEQVYISGTGSKGVLAKERLTFTTPNGNTVVTQPIAFG 211

Query:   176 CGFSTNRNFK--FSGIFGLGIGRXXXXXXXXXXXXYCIGSLHDPDYLHNKLILGDGAIID 233
             CG+      +  F+GI GLG               YCIG L + +Y +N+L+LG+ A I 
Sbjct:   212 CGYENGEQLESHFTGILGLGAKPTSLAVQLGSKFSYCIGDLANKNYGYNQLVLGEDADI- 270

Query:   234 EGDATPLQFIDGH--YYITLEAISVDGRMLDINPNIFKRDDSGGGVMIDSGTDVTWLVKE 291
              GD TP++F   +  YY+ LE ISV    L+I P +FKR     GV++DSGT  TWL   
Sbjct:   271 LGDPTPIEFETENSIYYMNLEGISVGDTQLNIEPVVFKRRGPRTGVILDSGTLYTWLADI 330

Query:   292 AYEALRDEVMIRLEGEQMRSYSWPDKLCYHGIMSSDLKGFPTVRFHFRGGAKLALEKDSM 351
             AY  L +E+   L+  ++  + + D LCYHG +S +L GFP V FHF GGA+LA+E  SM
Sbjct:   331 AYRELYNEIKSILD-PKLERFWFRDFLCYHGRVSEELIGFPVVTFHFAGGAELAMEATSM 389

Query:   352 FY---QPRP-DAFCMAVNPASINN-RYVNFSLIGMMAQQFYNVGYDIGRKQKTFQRMDCE 406
             FY   +P   + FCM+V P   +   Y  F+ IG+MAQQ+YN+GYD+  K    QR+DC 
Sbjct:   390 FYPLSEPNTFNVFCMSVKPTKEHGGEYKEFTAIGLMAQQYYNIGYDLKEKNIYLQRIDCV 449

Query:   407 VLDD 410
              LDD
Sbjct:   450 QLDD 453

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

TAIR\|locus:2126495 AT4G30030 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2126505 AT4G30040 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2145954 CDR1 "CONSTITUTIVE DISEASE RESISTANCE 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2010786 AT1G64830 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:504955954 AT2G35615 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2035297 AT1G01300 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2031225 AT1G25510 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2123196 UND "UNDEAD" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2206184 AT1G31450 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.23	0.691
3rd Layer	3.4.23.12	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		411
PLN03146		431	PLN03146, PLN03146, aspartyl protease family prote	6e-75
cd05476		265	cd05476, pepsin_A_like_plant, Chroloplast Nucleoid	1e-69
cd05472		299	cd05472, cnd41_like, Chloroplast Nucleoids DNA-bin	5e-40
cd05471		283	cd05471, pepsin_like, Pepsin-like aspartic proteas	1e-35
cd06096		326	cd06096, Plasmepsin_5, Plasmepsins are a class of	3e-15
cd05475		273	cd05475, nucellin_like, Nucellins, plant aspartic	6e-14
cd05489		362	cd05489, xylanase_inhibitor_I_like, TAXI-I inhibit	3e-11
cd05470		109	cd05470, pepsin_retropepsin_like, Cellular and ret	2e-07
pfam00026		316	pfam00026, Asp, Eukaryotic aspartyl protease	9e-06
PTZ00165		482	PTZ00165, PTZ00165, aspartyl protease; Provisional	2e-04
cd05477		318	cd05477, gastricsin, Gastricsins, asparate proteas	7e-04
cd05488		320	cd05488, Proteinase_A_fungi, Fungal Proteinase A ,	0.001

>gnl\|CDD\|178691 PLN03146, PLN03146, aspartyl protease family protein; Provisional	Back alignment and domain information

 Score =  239 bits (612), Expect = 6e-75
 Identities = 146/415 (35%), Positives = 208/415 (50%), Gaps = 25/415 (6%)

Query: 1   LIHRDSILSPYNNPNENPAHRVQRGINISIARLAYLQEKIRSHNTYQAQILPSNDISNSL 60
           LIHRDS  SP+ NP+E P+ R++     SI+R+ + +    S N  Q+ ++ +       
Sbjct: 29  LIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPTDASPNDPQSDLISNG----GE 84

Query: 61  FYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYPSRSSSYAYVPCDSEH 120
           + +NISIG PPVP     DTGS L+W  C PC DC  Q+  +F P +SS+Y  V CDS  
Sbjct: 85  YLMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQ 144

Query: 121 CRYFPYARCSAYKHRCIYTQLYLIGPETSVFVSTEQLTFKNTDESTIHVQDVVFGCGFST 180
           C+        + ++ C Y+  Y  G  T   ++ E LT  +T    +    +VFGCG + 
Sbjct: 145 CQALGNQASCSDENTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNN 204

Query: 181 NRNF--KFSGIFGLGIGRSSLVSQLNSS----FSYCIGSLHDPDYLHNKLILGDGAIIDE 234
              F  K SGI GLG G  SL+SQL SS    FSYC+  L       +K+  G  AI+  
Sbjct: 205 GGTFDEKGSGIVGLGGGPLSLISQLGSSIGGKFSYCLVPLSSDSNGTSKINFGTNAIVSG 264

Query: 235 GDA--TPL--QFIDGHYYITLEAISVDGRMLDINPNIFKRDDSGGGVMIDSGTDVTWLVK 290
                TPL  +  D  YY+TLEAISV  + L       K     G ++IDSGT +T L  
Sbjct: 265 SGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPY-TGSSKNGVEEGNIIIDSGTTLTLLPS 323

Query: 291 EAYEALRDEVMIRLEGEQMRSYSWPDKLCYHGIMSSDLKGFPTVRFHFRGGAKLALEKDS 350
           + Y  L   V   + GE++        LCY    +SD+K  P +  HF  GA + L+  +
Sbjct: 324 DFYSELESAVEEAIGGERVSDPQGLLSLCYSS--TSDIK-LPIITAHFT-GADVKLQPLN 379

Query: 351 MFYQPRPDAFCMAVNPASINNRYVNFSLIGMMAQQFYNVGYDIGRKQKTFQRMDC 405
            F +   D  C A+ P S      + ++ G +AQ  + VGYD+  K  +F+  DC
Sbjct: 380 TFVKVSEDLVCFAMIPTS------SIAIFGNLAQMNFLVGYDLESKTVSFKPTDC 428

Length = 431

>gnl\|CDD\|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants	Back alignment and domain information

>gnl\|CDD\|133139 cd05472, cnd41_like, Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase	Back alignment and domain information

>gnl\|CDD\|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH	Back alignment and domain information

>gnl\|CDD\|133160 cd06096, Plasmepsin_5, Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite	Back alignment and domain information

>gnl\|CDD\|133142 cd05475, nucellin_like, Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation	Back alignment and domain information

>gnl\|CDD\|133156 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibits degradation of xylan in the cell wall	Back alignment and domain information

>gnl\|CDD\|133137 cd05470, pepsin_retropepsin_like, Cellular and retroviral pepsin-like aspartate proteases	Back alignment and domain information

>gnl\|CDD\|215663 pfam00026, Asp, Eukaryotic aspartyl protease	Back alignment and domain information

>gnl\|CDD\|240300 PTZ00165, PTZ00165, aspartyl protease; Provisional	Back alignment and domain information

>gnl\|CDD\|133144 cd05477, gastricsin, Gastricsins, asparate proteases produced in gastric mucosa	Back alignment and domain information

>gnl\|CDD\|133155 cd05488, Proteinase_A_fungi, Fungal Proteinase A , aspartic proteinase superfamily	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		411
PLN03146		431	aspartyl protease family protein; Provisional	100.0
KOG1339		398	consensus Aspartyl protease [Posttranslational mod	100.0
cd06096		326	Plasmepsin_5 Plasmepsins are a class of aspartic p	100.0
cd05472		299	cnd41_like Chloroplast Nucleoids DNA-binding Prote	100.0
PTZ00165		482	aspartyl protease; Provisional	100.0
cd05490		325	Cathepsin_D2 Cathepsin_D2, pepsin family of protei	100.0
cd05478		317	pepsin_A Pepsin A, aspartic protease produced in g	100.0
cd05489		362	xylanase_inhibitor_I_like TAXI-I inhibits degradat	100.0
cd05486		316	Cathespin_E Cathepsin E, non-lysosomal aspartic pr	100.0
cd05477		318	gastricsin Gastricsins, asparate proteases produce	100.0
cd06098		317	phytepsin Phytepsin, a plant homolog of mammalian	100.0
cd05488		320	Proteinase_A_fungi Fungal Proteinase A , aspartic	100.0
cd05485		329	Cathepsin_D_like Cathepsin_D_like, pepsin family o	100.0
cd05487		326	renin_like Renin stimulates production of angioten	100.0
PTZ00147		453	plasmepsin-1; Provisional	100.0
cd05473		364	beta_secretase_like Beta-secretase, aspartic-acid	100.0
PTZ00013		450	plasmepsin 4 (PM4); Provisional	100.0
cd05475		273	nucellin_like Nucellins, plant aspartic proteases	100.0
cd05476		265	pepsin_A_like_plant Chroloplast Nucleoids DNA-bind	100.0
cd06097		278	Aspergillopepsin_like Aspergillopepsin_like, aspar	100.0
cd05474		295	SAP_like SAPs, pepsin-like proteinases secreted fr	100.0
PF00026		317	Asp: Eukaryotic aspartyl protease The Prosite entr	100.0
cd05471		283	pepsin_like Pepsin-like aspartic proteases, biloba	100.0
PF14543		164	TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A	100.0
PF14541		161	TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D	99.95
cd05470		109	pepsin_retropepsin_like Cellular and retroviral pe	99.91
cd05483		96	retropepsin_like_bacteria Bacterial aspartate prot	98.13
TIGR02281		121	clan_AA_DTGA clan AA aspartic protease, TIGR02281	96.91
PF13650		90	Asp_protease_2: Aspartyl protease	96.35
cd05479		124	RP_DDI RP_DDI; retropepsin-like domain of DNA dama	94.88
cd05479		124	RP_DDI RP_DDI; retropepsin-like domain of DNA dama	92.85
PF08284		135	RVP_2: Retroviral aspartyl protease; InterPro: IPR	92.0
cd05484		91	retropepsin_like_LTR_2 Retropepsins_like_LTR, peps	91.89
PF13975		72	gag-asp_proteas: gag-polyprotein putative aspartyl	88.62
cd06095		86	RP_RTVL_H_like Retropepsin of the RTVL_H family of	88.44
TIGR03698		107	clan_AA_DTGF clan AA aspartic protease, AF_0612 fa	87.31
PF00077		100	RVP: Retroviral aspartyl protease The Prosite entr	84.94
COG3577		215	Predicted aspartyl protease [General function pred	83.76
PF13650		90	Asp_protease_2: Aspartyl protease	81.03

>PLN03146 aspartyl protease family protein; Provisional	Back alignment and domain information

Probab=100.00  E-value=7.6e-75  Score=576.72  Aligned_cols=392  Identities=36%  Similarity=0.591  Sum_probs=323.6

Q ss_pred             CCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhhcCCCcceeccccccCCCceEEEEEEeCCCCceEEEEEeC
Q 038667            1 LIHRDSILSPYNNPNENPAHRVQRGINISIARLAYLQEKIRSHNTYQAQILPSNDISNSLFYVNISIGQPPVPQFTAMDT   80 (411)
Q Consensus         1 ~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~Y~~~i~iGtP~q~~~~i~DT   80 (411)
                      |+||+++|||+++++.++.++++++++|+++|++++.++.....  .+.. +. ..++++|+++|.||||||++.|++||
T Consensus        29 l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~--~~~~-~~-~~~~~~Y~v~i~iGTPpq~~~vi~DT  104 (431)
T PLN03146         29 LIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPTDASPN--DPQS-DL-ISNGGEYLMNISIGTPPVPILAIADT  104 (431)
T ss_pred             EEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhccccCC--cccc-Cc-ccCCccEEEEEEcCCCCceEEEEECC
Confidence            68999999999988888899999999999999999965532211  1111 11 24678999999999999999999999


Q ss_pred             CCCceeEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCcCCCCCCC-CCCCCCCcceeeEeeCCCCeeeeeEEEEEEEe
Q 038667           81 GSSLLWVHCYPCRDCSPQLGTIFYPSRSSSYAYVPCDSEHCRYFPYA-RCSAYKHRCIYTQLYLIGPETSVFVSTEQLTF  159 (411)
Q Consensus        81 GSs~~wv~~~~C~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~-~C~~~~~~~~~~~~Y~~gs~~~G~~~~D~v~~  159 (411)
                      ||+++||+|.+|..|+.+.++.|||++|+||+.++|+++.|..+... .|... +.|.|.+.|+||+.+.|.+++|+|+|
T Consensus       105 GS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~-~~c~y~i~Ygdgs~~~G~l~~Dtltl  183 (431)
T PLN03146        105 GSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDE-NTCTYSYSYGDGSFTKGNLAVETLTI  183 (431)
T ss_pred             CCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCC-CCCeeEEEeCCCCceeeEEEEEEEEe
Confidence            99999999999999998889999999999999999999999877643 47554 57999999999998899999999999


Q ss_pred             eCCCCCceeeecEEEEeEeeec--cCCCcceEEecCCCCCchHHhh----cCceEEecCCCCCCCCCCcceecCCCCCCC
Q 038667          160 KNTDESTIHVQDVVFGCGFSTN--RNFKFSGIFGLGIGRSSLVSQL----NSSFSYCIGSLHDPDYLHNKLILGDGAIID  233 (411)
Q Consensus       160 ~~~~~~~~~~~~~~fg~~~~~~--~~~~~~GilGLg~~~~S~~~ql----~~~FS~~l~~~~~~~~~~g~l~fGg~~~~~  233 (411)
                      ++..+..++++++.|||++.+.  +...++||||||+++.|+++||    .++|||||.+..++....|.|+||+.++..
T Consensus       184 g~~~~~~~~v~~~~FGc~~~~~g~f~~~~~GilGLG~~~~Sl~sql~~~~~~~FSycL~~~~~~~~~~g~l~fG~~~~~~  263 (431)
T PLN03146        184 GSTSGRPVSFPGIVFGCGHNNGGTFDEKGSGIVGLGGGPLSLISQLGSSIGGKFSYCLVPLSSDSNGTSKINFGTNAIVS  263 (431)
T ss_pred             ccCCCCcceeCCEEEeCCCCCCCCccCCCceeEecCCCCccHHHHhhHhhCCcEEEECCCCCCCCCCcceEEeCCccccC
Confidence            8755445678999999999765  5445899999999999999998    468999998654333345899999965431


Q ss_pred             -C-Cccccccc--CCCceEEEeeEEEECCeEEecCCCcccccCCCCcEEEecccccccccHHHHHHHHHHHHHHhhcCCC
Q 038667          234 -E-GDATPLQF--IDGHYYITLEAISVDGRMLDINPNIFKRDDSGGGVMIDSGTDVTWLVKEAYEALRDEVMIRLEGEQM  309 (411)
Q Consensus       234 -~-~~~~pl~~--~~~~y~v~l~~i~v~g~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~g~~~  309 (411)
                       . ..|+||..  ++.+|+|.|++|+||++++.+++..|. ..+.+++||||||++++||+++|++|+++|.+++.+...
T Consensus       264 ~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~-~~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~  342 (431)
T PLN03146        264 GSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKN-GVEEGNIIIDSGTTLTLLPSDFYSELESAVEEAIGGERV  342 (431)
T ss_pred             CCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccc-cCCCCcEEEeCCccceecCHHHHHHHHHHHHHHhccccC
Confidence             2 35899952  357999999999999999988766654 233468999999999999999999999999998853111


Q ss_pred             cCCCCCCCCccccccCCCccCCCeEEEEEcCCcEEEEcCCceEEEcCCCeEEEEEEeCCCCCCcccceeeehhhcceeEE
Q 038667          310 RSYSWPDKLCYHGIMSSDLKGFPTVRFHFRGGAKLALEKDSMFYQPRPDAFCMAVNPASINNRYVNFSLIGMMAQQFYNV  389 (411)
Q Consensus       310 ~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~~g~~~~l~~~~y~~~~~~~~~C~~~~~~~~~~~~~~~~IlG~~fl~~~yv  389 (411)
                      .......++|+....   ...+|+|+|+|+ |+++.|++++|++....+.+|+++....+      .+|||+.|||++||
T Consensus       343 ~~~~~~~~~C~~~~~---~~~~P~i~~~F~-Ga~~~l~~~~~~~~~~~~~~Cl~~~~~~~------~~IlG~~~q~~~~v  412 (431)
T PLN03146        343 SDPQGLLSLCYSSTS---DIKLPIITAHFT-GADVKLQPLNTFVKVSEDLVCFAMIPTSS------IAIFGNLAQMNFLV  412 (431)
T ss_pred             CCCCCCCCccccCCC---CCCCCeEEEEEC-CCeeecCcceeEEEcCCCcEEEEEecCCC------ceEECeeeEeeEEE
Confidence            111112279996321   247999999998 99999999999998877789999875422      39999999999999


Q ss_pred             EEECCCCEEEEecCCCCCc
Q 038667          390 GYDIGRKQKTFQRMDCEVL  408 (411)
Q Consensus       390 vfD~~~~riGfa~~~c~~~  408 (411)
                      |||++++|||||+.+|+++
T Consensus       413 vyDl~~~~igFa~~~C~~~  431 (431)
T PLN03146        413 GYDLESKTVSFKPTDCTKM  431 (431)
T ss_pred             EEECCCCEEeeecCCcCcC
Confidence            9999999999999999975

>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite	Back alignment and domain information

>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase	Back alignment and domain information

>PTZ00165 aspartyl protease; Provisional	Back alignment and domain information

>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases	Back alignment and domain information

>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals	Back alignment and domain information

>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall	Back alignment and domain information

>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease	Back alignment and domain information

>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa	Back alignment and domain information

>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins	Back alignment and domain information

>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily	Back alignment and domain information

>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases	Back alignment and domain information

>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure	Back alignment and domain information

>PTZ00147 plasmepsin-1; Provisional	Back alignment and domain information

>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease	Back alignment and domain information

>PTZ00013 plasmepsin 4 (PM4); Provisional	Back alignment and domain information

>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation	Back alignment and domain information

>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants	Back alignment and domain information

>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin	Back alignment and domain information

>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins	Back alignment and domain information

>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077	Back alignment and domain information

>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH	Back alignment and domain information

>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A	Back alignment and domain information

>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A	Back alignment and domain information

>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases	Back alignment and domain information

>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family	Back alignment and domain information

>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family	Back alignment and domain information

>PF13650 Asp_protease_2: Aspartyl protease	Back alignment and domain information

>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein	Back alignment and domain information

>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein	Back alignment and domain information

>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses)	Back alignment and domain information

>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases	Back alignment and domain information

>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease	Back alignment and domain information

>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements	Back alignment and domain information

>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family	Back alignment and domain information

>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>COG3577 Predicted aspartyl protease [General function prediction only]	Back alignment and domain information

>PF13650 Asp_protease_2: Aspartyl protease	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		411
3aup_A		403	SBG7S, BG, basic 7S globulin; pepsin-like fold, pl	5e-69
1t6e_X		381	Xylanase inhibitor; two beta-barrel domain structu	1e-62
3vla_A		413	EDGP; extracellular, inhibitor, plant protein; HET	5e-61
3lpj_A		455	Beta-secretase 1; alzheimer'S, aspartyl protease,	3e-16
2qp8_A		395	Beta-secretase 1; BACE1, protease, alternative spl	3e-13
2ewy_A		383	Beta-secretase 2; BACE2, aspartic protease, hydrol	2e-12
2qzx_A		342	Candidapepsin-5; aspartic proteinase, aspartyl pro	7e-12
1qdm_A		478	Prophytepsin; aspartic proteinases, saposin-like d	8e-12
3pvk_A		342	Candidapepsin-2; hydrolase; 1.27A {Candida albican	1e-11
1j71_A		334	Candidapepsin, aspartic proteinase; candida tropic	2e-11
3fv3_A		339	SAPP1P-secreted aspartic protease 1; secreted aspa	2e-10
1dpj_A		329	Proteinase A; proteinase A, hydrolase-hydrolase in	6e-10
1b5f_A		239	Protein (cardosin A); hydrolase, aspartic proteina	7e-10
3psg_A		370	Pepsinogen; hydrolase(acid proteinase zymogen); 1.	1e-09
3c9x_A		329	Trichoderma reesei aspartic protease; aspartic pro	2e-09
1miq_A		375	Plasmepsin; aspartic proteinase zymogen, domain op	2e-09
2x0b_A		383	Renin; hydrolase-hormone complex, hydrolase hormon	2e-09
3qvc_A		451	Histo-aspartic protease; HAP, plasmepsin, zymogen,	2e-09
1tzs_A		351	Cathepsin E; hydrolase, aspartic protease, activat	2e-09
2bju_A		453	Plasmepsin II; aspartic proteinase, drug design, m	4e-09
1mpp_A		361	Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu	5e-09
1am5_A		324	Pepsin, acid proteinase; aspartyl protease, hydrol	6e-09
1lya_A		97	Cathepsin D; lysosomal aspartic protease; HET: NAG	6e-09
3k1w_A		341	Renin; protease, alternative splicing, aspartyl pr	1e-08
3cms_A		323	Chymosin B; hydrolase, acid proteinase; 2.00A {Bos	3e-08
1htr_B		329	Gastricsin; aspartyl protease; 1.62A {Homo sapiens	3e-08
1oew_A		329	Endothiapepsin; hydrolase, aspartic proteinase mec	7e-08
2apr_A		325	Rhizopuspepsin; hydrolase (aspartic proteinase); 1	9e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
1yg9_A		330	Aspartic protease BLA G 2; allegren, hydrolase, al	2e-06
1bxo_A		323	Protein (penicillopepsin); hydrolase, phosphonate	2e-06
1ibq_A		325	Aspergillopepsin; aspartic proteinase, hydrolase;	4e-06
1wkr_A		340	Polyporopepsin; hydrolase, hydrolase-hydrolase inh	3e-05
1izd_A		323	Aspartic proteinase; sugar binding, acid protease,	9e-05

>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403	Back alignment and structure

 Score =  222 bits (567), Expect = 5e-69
 Identities = 69/391 (17%), Positives = 120/391 (30%), Gaps = 43/391 (10%)

Query: 47  QAQILP-SNDISNSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYP 105
              +LP  ND S  L + N+    P +     +D   + LWV+C              + 
Sbjct: 8   NLVVLPVQNDGSTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYSSKTYQAPFCHS 67

Query: 106 SRSSSYAYVPCDSEHCRYFPYARCSAYKHRCIYTQLYLIGPETSVFVSTEQLTFKNTDES 165
           ++ S      C S  C       C       + +   +        +  + L    T  S
Sbjct: 68  TQCSRANTHQCLS--CPAASRPGCHK-NTCGLMSTNPITQQTGLGELGEDVLAIHATQGS 124

Query: 166 T------IHVQDVVFGCGFSTNRNFKF----SGIFGLGIGRSSLVSQLNSS------FSY 209
           T      + V   +F C  S            G+ GLG    SL +QL S       F+ 
Sbjct: 125 TQQLGPLVTVPQFLFSCAPSFLVQKGLPRNTQGVAGLGHAPISLPNQLASHFGLQRQFTT 184

Query: 210 CIGSLHDPDYLHNKLILGDGAIIDEGDAT-----------PLQFIDGHYYITLEAISVDG 258
           C+            +I GD                         + G Y + + +I ++ 
Sbjct: 185 CLSRYPTSK---GAIIFGDAPNNMRQFQNQDIFHDLAFTPLTITLQGEYNVRVNSIRINQ 241

Query: 259 RMLDINPNIFKRDDS--GGGVMIDSGTDVTWLVKEAYEALRDEVMIRLEGEQMRSYSWPD 316
             +     I         GG MI + T    L +  Y+A       +L  +       P 
Sbjct: 242 HSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVKSVAPF 301

Query: 317 KLCYHGIMSSDLKGFPTVR--FHFRGGAKLALEKDSMFYQPRPDAFCMAVNPASINNRYV 374
            LC++    + +  +P+V        G    +  + +  Q +P   C+ V    +  R  
Sbjct: 302 GLCFNS---NKINAYPSVDLVMDKPNGPVWRISGEDLMVQAQPGVTCLGVMNGGMQPR-- 356

Query: 375 NFSLIGMMAQQFYNVGYDIGRKQKTFQRMDC 405
               +G    +   V +D+ R +  F     
Sbjct: 357 AEITLGARQLEENLVVFDLARSRVGFSTSSL 387

PyMOL of 3aup

>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Length = 381	Back alignment and structure

>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Length = 413	Back alignment and structure

>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455	Back alignment and structure

>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395	Back alignment and structure

>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383	Back alignment and structure

>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342	Back alignment and structure

>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478	Back alignment and structure

>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342	Back alignment and structure

>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334	Back alignment and structure

>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339	Back alignment and structure

>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Length = 329	Back alignment and structure

>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 239	Back alignment and structure

>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370	Back alignment and structure

>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329	Back alignment and structure

>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Length = 375	Back alignment and structure

>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Length = 383	Back alignment and structure

>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Length = 451	Back alignment and structure

>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Length = 351	Back alignment and structure

>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Length = 453	Back alignment and structure

>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361	Back alignment and structure

>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324	Back alignment and structure

>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Length = 97	Back alignment and structure

>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Length = 341	Back alignment and structure

>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Length = 323	Back alignment and structure

>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Length = 329	Back alignment and structure

>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Length = 329	Back alignment and structure

>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Length = 325	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Length = 330	Back alignment and structure

>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Length = 323	Back alignment and structure

>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Length = 325	Back alignment and structure

>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Length = 340	Back alignment and structure

>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Length = 323	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		411
3vla_A		413	EDGP; extracellular, inhibitor, plant protein; HET	100.0
3aup_A		403	SBG7S, BG, basic 7S globulin; pepsin-like fold, pl	100.0
3psg_A		370	Pepsinogen; hydrolase(acid proteinase zymogen); 1.	100.0
1tzs_A		351	Cathepsin E; hydrolase, aspartic protease, activat	100.0
2apr_A		325	Rhizopuspepsin; hydrolase (aspartic proteinase); 1	100.0
3c9x_A		329	Trichoderma reesei aspartic protease; aspartic pro	100.0
1j71_A		334	Candidapepsin, aspartic proteinase; candida tropic	100.0
1oew_A		329	Endothiapepsin; hydrolase, aspartic proteinase mec	100.0
2x0b_A		383	Renin; hydrolase-hormone complex, hydrolase hormon	100.0
1dpj_A		329	Proteinase A; proteinase A, hydrolase-hydrolase in	100.0
1mpp_A		361	Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu	100.0
2qzx_A		342	Candidapepsin-5; aspartic proteinase, aspartyl pro	100.0
3cms_A		323	Chymosin B; hydrolase, acid proteinase; 2.00A {Bos	100.0
4aa9_A		320	Chymosin; hydrolase, aspartic peptidase, rennet; H	100.0
1am5_A		324	Pepsin, acid proteinase; aspartyl protease, hydrol	100.0
3fv3_A		339	SAPP1P-secreted aspartic protease 1; secreted aspa	100.0
1htr_B		329	Gastricsin; aspartyl protease; 1.62A {Homo sapiens	100.0
3pvk_A		342	Candidapepsin-2; hydrolase; 1.27A {Candida albican	100.0
3k1w_A		341	Renin; protease, alternative splicing, aspartyl pr	100.0
1miq_A		375	Plasmepsin; aspartic proteinase zymogen, domain op	100.0
1ibq_A		325	Aspergillopepsin; aspartic proteinase, hydrolase;	100.0
1izd_A		323	Aspartic proteinase; sugar binding, acid protease,	100.0
1qdm_A		478	Prophytepsin; aspartic proteinases, saposin-like d	100.0
2ewy_A		383	Beta-secretase 2; BACE2, aspartic protease, hydrol	100.0
1bxo_A		323	Protein (penicillopepsin); hydrolase, phosphonate	100.0
2qp8_A		395	Beta-secretase 1; BACE1, protease, alternative spl	100.0
1yg9_A		330	Aspartic protease BLA G 2; allegren, hydrolase, al	100.0
3qvc_A		451	Histo-aspartic protease; HAP, plasmepsin, zymogen,	100.0
2bju_A		453	Plasmepsin II; aspartic proteinase, drug design, m	100.0
3lpj_A		455	Beta-secretase 1; alzheimer'S, aspartyl protease,	100.0
1t6e_X		381	Xylanase inhibitor; two beta-barrel domain structu	100.0
3vf3_A		402	Beta-secretase 1; structure-based drug design, hyd	100.0
1wkr_A		340	Polyporopepsin; hydrolase, hydrolase-hydrolase inh	100.0
1b5f_A		239	Protein (cardosin A); hydrolase, aspartic proteina	100.0
1lya_B		241	Cathepsin D; lysosomal aspartic protease; HET: NAG	100.0
1lya_A		97	Cathepsin D; lysosomal aspartic protease; HET: NAG	99.89
1b5f_B		87	Protein (cardosin A); hydrolase, aspartic proteina	99.66
3s8i_A		148	Protein DDI1 homolog 1; protease, structural genom	93.74
2i1a_A		148	DNA damage-inducible protein DDI1; acid protease f	92.78
2i1a_A		148	DNA damage-inducible protein DDI1; acid protease f	91.72
3s8i_A		148	Protein DDI1 homolog 1; protease, structural genom	88.85
2hs1_A		99	HIV-1 protease; ultra-high resolution active site	85.24
1fmb_A		104	EIAV protease; hydrolase (acid proteinase), RNA-di	85.09
3liy_A		116	Protease; hydrolase, hydrolase-hydrolase inhibitor	83.06
3ec0_A		99	Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1	82.0

>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A	Back alignment and structure

Probab=100.00  E-value=1.7e-60  Score=472.07  Aligned_cols=332  Identities=20%  Similarity=0.317  Sum_probs=265.8

Q ss_pred             cCCCceEEEEEEeCCCCceEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCcCCCCCCCCCCC---
Q 038667           55 DISNSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYPSRSSSYAYVPCDSEHCRYFPYARCSA---  131 (411)
Q Consensus        55 ~~~~~~Y~~~i~iGtP~q~~~~i~DTGSs~~wv~~~~C~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~~C~~---  131 (411)
                      +..+++|+++|.||||||++.|+|||||+++||+|.+|             .+|+||+.++|.++.|.......|..   
T Consensus        16 d~~~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~c~~c-------------~~Sst~~~v~C~s~~C~~~~~~~~~~c~s   82 (413)
T 3vla_A           16 DASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQN-------------YVSSTYRPVRCRTSQCSLSGSIACGDCFN   82 (413)
T ss_dssp             CTTTCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSS-------------CCCTTCEECBTTSHHHHHTTCCEEECCSS
T ss_pred             cCCCCeEEEEEEcCCCCcceEEEEeCCChhhhcccCCC-------------CCCCCcCccCCCcccccccccCCCccccc
Confidence            35789999999999999999999999999999999865             48999999999999998765333311   


Q ss_pred             ------CCCcceeeEee-CCCCeeeeeEEEEEEEeeCCCCC----ceeeecEEEEeEeeec---cCCCcceEEecCCCCC
Q 038667          132 ------YKHRCIYTQLY-LIGPETSVFVSTEQLTFKNTDES----TIHVQDVVFGCGFSTN---RNFKFSGIFGLGIGRS  197 (411)
Q Consensus       132 ------~~~~~~~~~~Y-~~gs~~~G~~~~D~v~~~~~~~~----~~~~~~~~fg~~~~~~---~~~~~~GilGLg~~~~  197 (411)
                            .++.|.|.+.| ++++.+.|.+++|+|+|+..++.    .++++++.|||++...   +...++||||||++.+
T Consensus        83 ~~~~~c~~~~c~~~i~Y~~d~~~~~G~l~~Dtv~l~~~~g~~~~~~~~v~~~~FGc~~~~~~~g~~~~~dGIlGLg~~~l  162 (413)
T 3vla_A           83 GPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRI  162 (413)
T ss_dssp             CCBTTBCSSEEEECCEETTTTEECCEEEEEEEEEEEEECSSBEEEEEEEEEEEEEEECGGGGTTSCTTCCEEEECSSSSS
T ss_pred             CCCCCCCCCcCcceeecCcCCceeeeEEEEEEEEecccCCCCcccceeeCCEEEECcccccccCcccccccccccCCCCc
Confidence                  12579999999 48877899999999999854332    4788999999999863   3346899999999999


Q ss_pred             chHHhh------cCceEEecCCCCCCCCCCcceecCCCCCC--------CC-CcccccccC-------------CCceEE
Q 038667          198 SLVSQL------NSSFSYCIGSLHDPDYLHNKLILGDGAII--------DE-GDATPLQFI-------------DGHYYI  249 (411)
Q Consensus       198 S~~~ql------~~~FS~~l~~~~~~~~~~g~l~fGg~~~~--------~~-~~~~pl~~~-------------~~~y~v  249 (411)
                      |+++||      .++|||||.+..   ...|.|+||+.+..        .. ..|+||...             ..+|+|
T Consensus       163 Sl~sql~~~~~i~~~FS~cL~~~~---~~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl~~~~~~~~~~~~~~~~~~~y~V  239 (413)
T 3vla_A          163 ALPSQFASAFSFKRKFAMCLSGST---SSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFI  239 (413)
T ss_dssp             SHHHHHHHHHTCCSEEEEECCSCS---SSCEEEEEESCCEEETTTEEECTTTSEEEECBCCSSCCSSSCCTTCCCCSCEE
T ss_pred             chHHHHhhhcCCCceEEEeCCCCC---CCceEEEECCCcccccccccccCCceeEeecccCCccccccccccCCCceEEE
Confidence            999998      389999999842   23599999997631        13 569999532             279999


Q ss_pred             EeeEEEECCeEEecCCCcccccC-CCCcEEEecccccccccHHHHHHHHHHHHHHhhcCCCcCCCC--CCCCccccccCC
Q 038667          250 TLEAISVDGRMLDINPNIFKRDD-SGGGVMIDSGTDVTWLVKEAYEALRDEVMIRLEGEQMRSYSW--PDKLCYHGIMSS  326 (411)
Q Consensus       250 ~l~~i~v~g~~~~~~~~~~~~~~-~~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~g~~~~~~~~--~~~~C~~~~~~~  326 (411)
                      +|++|+||++.+.+++..|..+. +++++||||||++++||+++|++|+++|.+++....+++...  ..+.|+......
T Consensus       240 ~l~~IsVgg~~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~~C~~~~~~~  319 (413)
T 3vla_A          240 GVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASVAPFGACFSTDNIL  319 (413)
T ss_dssp             CCCEEEETTEEECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHHHHTTCCEECCCTTCSCEEECTTCC
T ss_pred             EEEEEEECCEEccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHhcccCCCcCCCCCCCcceeccCCcc
Confidence            99999999999998877774332 357899999999999999999999999998874211232221  227999654211


Q ss_pred             ---CccCCCeEEEEEcC-CcEEEEcCCceEEEcCCCeEEEEEEeCCCCCCcccceeeehhhcceeEEEEECCCCEEEEec
Q 038667          327 ---DLKGFPTVRFHFRG-GAKLALEKDSMFYQPRPDAFCMAVNPASINNRYVNFSLIGMMAQQFYNVGYDIGRKQKTFQR  402 (411)
Q Consensus       327 ---~~~~~P~i~~~f~~-g~~~~l~~~~y~~~~~~~~~C~~~~~~~~~~~~~~~~IlG~~fl~~~yvvfD~~~~riGfa~  402 (411)
                         ....+|+|+|+|++ +++|+|++++|+++..++.+|+++.......  ++.||||+.|||++|+|||++++|||||+
T Consensus       320 ~~~~~~~lP~i~f~f~g~~~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~~--~~~~IlGd~fl~~~~vvfD~~~~riGfa~  397 (413)
T 3vla_A          320 STRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGVVDGGSNL--RTSIVIGGHQLEDNLVQFDLATSRVGFSG  397 (413)
T ss_dssp             EETTEECCCCEEEECSSTTCEEEECHHHHEEEEETTEEEECEEEEESSC--SSSEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred             ccccccCCCcEEEEEcCCcEEEEeCccceEEEeCCCcEEEEEEecCCCc--ccceeEehhhhcCeEEEEECCCCEEEEEE
Confidence               12379999999995 4899999999999876778999887754321  23599999999999999999999999998


Q ss_pred             CC
Q 038667          403 MD  404 (411)
Q Consensus       403 ~~  404 (411)
                      +.
T Consensus       398 ~~  399 (413)
T 3vla_A          398 TL  399 (413)
T ss_dssp             EG
T ss_pred             ec
Confidence            53

PyMOL of 3vla

>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}	Back alignment and structure

>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A	Back alignment and structure

>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}	Back alignment and structure

>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A	Back alignment and structure

>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*	Back alignment and structure

>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2	Back alignment and structure

>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...	Back alignment and structure

>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}	Back alignment and structure

>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*	Back alignment and structure

>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*	Back alignment and structure

>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}	Back alignment and structure

>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A	Back alignment and structure

>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A	Back alignment and structure

>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2	Back alignment and structure

>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*	Back alignment and structure

>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A	Back alignment and structure

>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*	Back alignment and structure

>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...	Back alignment and structure

>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*	Back alignment and structure

>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2	Back alignment and structure

>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*	Back alignment and structure

>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2	Back alignment and structure

>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}	Back alignment and structure

>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A	Back alignment and structure

>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ...	Back alignment and structure

>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*	Back alignment and structure

>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*	Back alignment and structure

>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...	Back alignment and structure

>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*	Back alignment and structure

>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A	Back alignment and structure

>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...	Back alignment and structure

>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2	Back alignment and structure

>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2	Back alignment and structure

>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*	Back alignment and structure

>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*	Back alignment and structure

>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2	Back alignment and structure

>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}	Back alignment and structure

>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}	Back alignment and structure

>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}	Back alignment and structure

>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}	Back alignment and structure

>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ...	Back alignment and structure

>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A*	Back alignment and structure

>3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A*	Back alignment and structure

>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ...	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		411
d1t6ex_		381	b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr	3e-38
d2qp8a1		387	b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum	7e-25
d1miqa_		373	b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e	6e-23
d1qdma2		337	b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase	8e-23
d1dpja_		329	b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha	1e-22
g1lya.1		338	b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens)	2e-22
g1htr.1		372	b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens	4e-22
g1b5f.1		326	b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin	6e-22
d3cmsa_		323	b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos	2e-21
d1am5a_		324	b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo	2e-20
d2apra_		325	b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus	4e-20
d1smra_		335	b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu	4e-20
d1oewa_		330	b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung	7e-20
d3psga_		370	b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI	1e-19
d2bjua1		329	b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad	1e-19
d1mppa_		357	b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]	2e-19
d1j71a_		334	b.50.1.2 (A:) Acid protease {Yeast (Candida tropic	8e-18
d1bxoa_		323	b.50.1.2 (A:) Acid protease {Fungus (Penicillium j	3e-17
d1hrna_		337	b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho	3e-17
d1eaga_		342	b.50.1.2 (A:) Acid protease {Yeast (Candida albica	4e-17
d1izea_		323	b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o	8e-16
d1wkra_		340	b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo	3e-12

>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381	Back information, alignment and structure


class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score =  140 bits (352), Expect = 3e-38
 Identities = 59/384 (15%), Positives = 121/384 (31%), Gaps = 45/384 (11%)

Query: 50  ILP-SNDISNSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYPSRS 108
           + P + D + SL+ +    G   V     +D    L+W  C   +  +    +      +
Sbjct: 4   LAPVTKDPATSLYTIPFHDGASLV-----LDVAGPLVWSTCDGGQPPAEIPCSSPTCLLA 58

Query: 109 SSYAYVPCDSEHCRYFPYARCSAYKHRCIYTQLYLIGPETSVFVSTEQLTFKNTDES--- 165
           ++Y    C +  C    + +         Y    + G   +  +S  +     TD S   
Sbjct: 59  NAYPAPGCPAPSCGSDKHDKPC-----TAYPYNPVSGACAAGSLSHTRFVANTTDGSKPV 113

Query: 166 TIHVQDVVFGCGFSTNRNF---KFSGIFGLGIGRSSLVSQLNSS--FSYCIGSLHDPDYL 220
           +     V+  C  S          +G+ GL     +L +Q+ S+   +     L  P   
Sbjct: 114 SKVNVGVLAACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRF-LLCLPTGG 172

Query: 221 HNKLILGDGAIIDEGDATPLQFI-------DGHYYITLEAISVDGRMLDINPNIFKRDDS 273
               I G G +        + +           +YI+  +I V    + +         +
Sbjct: 173 PGVAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGAL----A 228

Query: 274 GGGVMIDSGTDVTWLVKEAYEALRDEVMIRLEGEQMRSYSWPD--------KLCYHG--- 322
            GGVM+ +      L  + Y  L D     L  +                  +CY     
Sbjct: 229 TGGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTL 288

Query: 323 IMSSDLKGFPTVRFHFRGGAKLALEKDSMFYQPRPDAFCMAV---NPASINNRYVNFSLI 379
             +      P V+    GG+   +   +     +    C+A       +  +      ++
Sbjct: 289 GNNLGGYAVPNVQLGLDGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVIL 348

Query: 380 GMMAQQFYNVGYDIGRKQKTFQRM 403
           G    + + + +D+ +K+  F R+
Sbjct: 349 GGAQMEDFVLDFDMEKKRLGFSRL 372

PyMOL of d1t6ex_

>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387	Back information, alignment and structure

>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373	Back information, alignment and structure

>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337	Back information, alignment and structure

>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329	Back information, alignment and structure

>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323	Back information, alignment and structure

>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324	Back information, alignment and structure

>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325	Back information, alignment and structure

>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335	Back information, alignment and structure

>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370	Back information, alignment and structure

>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329	Back information, alignment and structure

>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357	Back information, alignment and structure

>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334	Back information, alignment and structure

>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323	Back information, alignment and structure

>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337	Back information, alignment and structure

>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342	Back information, alignment and structure

>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323	Back information, alignment and structure

>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		411
d3psga_		370	Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]}	100.0
g1htr.1		372	Pepsin(ogen) {Human (Homo sapiens), progastricsin	100.0
d1dpja_		329	Acid protease {Baker's yeast (Saccharomyces cerevi	100.0
d2apra_		325	Acid protease {Bread mold (Rhizopus chinensis) [Ta	100.0
d1j71a_		334	Acid protease {Yeast (Candida tropicalis) [TaxId:	100.0
d1oewa_		330	Endothiapepsin {Chestnut blight fungus (Endothia p	100.0
d1smra_		335	Chymosin (synonym: renin) {Mouse (Mus musculus) [T	100.0
d1am5a_		324	Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId:	100.0
d1miqa_		373	Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo	100.0
d1hrna_		337	Chymosin (synonym: renin) {Human (Homo sapiens) [T	100.0
d1eaga_		342	Acid protease {Yeast (Candida albicans) [TaxId: 54	100.0
d2qp8a1		387	beta-secretase (memapsin) {Human (Homo sapiens) [T	100.0
d1izea_		323	Acid protease {Fungus (Aspergillus oryzae) [TaxId:	100.0
d1mppa_		357	Pepsin {Mucor pusillus [TaxId: 4840]}	100.0
g1lya.1		338	Cathepsin D {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1bxoa_		323	Acid protease {Fungus (Penicillium janthinellum),	100.0
d1qdma2		337	Plant acid proteinase, phytepsin {Barley (Hordeum	100.0
d2bjua1		329	Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo	100.0
g1b5f.1		326	Plant acid proteinase, phytepsin {Cynara carduncul	100.0
d1t6ex_		381	Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu	100.0
d3cmsa_		323	Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId	100.0
d1wkra_		340	Acid protease {Irpex lacteus (Polyporus tulipifera	100.0

>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]}	Back information, alignment and structure

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=2.7e-54  Score=421.03  Aligned_cols=301  Identities=20%  Similarity=0.297  Sum_probs=243.1

Q ss_pred             cccccCCCceEEEEEEeCCCCceEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCcCCCCCCCCCC
Q 038667           51 LPSNDISNSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYPSRSSSYAYVPCDSEHCRYFPYARCS  130 (411)
Q Consensus        51 ~~~~~~~~~~Y~~~i~iGtP~q~~~~i~DTGSs~~wv~~~~C~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~~C~  130 (411)
                      .|+.++.+.+|+++|.||||||++.|+|||||+++||+|..|..|..+.++.|||++|+||+.                 
T Consensus        48 ~~l~n~~d~~Y~~~i~iGtP~Q~~~vi~DTGSs~~Wv~~~~C~~~~~~~~~~yd~~~Sst~~~-----------------  110 (370)
T d3psga_          48 EPLENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEA-----------------  110 (370)
T ss_dssp             CTTGGGTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCEE-----------------
T ss_pred             cccccccCCEEEEEEEEcCCCeEEEEEEeCCCCCeEEECccCCCcccccccccCCCccccccc-----------------
Confidence            355456789999999999999999999999999999999999998878999999999999998                 


Q ss_pred             CCCCcceeeEeeCCCCeeeeeEEEEEEEeeCCCCCceeeecEEEEeEeeec---c-CCCcceEEecCCCCCc------hH
Q 038667          131 AYKHRCIYTQLYLIGPETSVFVSTEQLTFKNTDESTIHVQDVVFGCGFSTN---R-NFKFSGIFGLGIGRSS------LV  200 (411)
Q Consensus       131 ~~~~~~~~~~~Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~---~-~~~~~GilGLg~~~~S------~~  200 (411)
                         ..|.|.+.|++|+ +.|.++.|++.+++     ++++++.|||+....   + ....+||+|||+...+      ++
T Consensus       111 ---~~~~~~~~Yg~Gs-~~G~~~~d~~~~~~-----~~~~~~~f~~~~~~~~~~~~~~~~~Gi~gl~~~~~~~~~~~~~~  181 (370)
T d3psga_         111 ---TSQELSITYGTGS-MTGILGYDTVQVGG-----ISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVF  181 (370)
T ss_dssp             ---EEEEEEEESSSCE-EEEEEEEEEEEETT-----EEEEEEEEEEECSCCCGGGGGCSCSEEEECSCGGGCGGGCCCHH
T ss_pred             ---CCCcEEEEeCCce-EEEEEEEEEEeeec-----eeeeeeEEEEEeeccCceecccccccccccccCcccccCCCchh
Confidence               7899999999998 69999999999998     899999999998765   2 3458999999987543      44


Q ss_pred             Hhh-------cCceEEecCCCCCCCCCCcceecCCCCCC-CC--CcccccccCCCceEEEeeEEEECCeEEecCCCcccc
Q 038667          201 SQL-------NSSFSYCIGSLHDPDYLHNKLILGDGAII-DE--GDATPLQFIDGHYYITLEAISVDGRMLDINPNIFKR  270 (411)
Q Consensus       201 ~ql-------~~~FS~~l~~~~~~~~~~g~l~fGg~~~~-~~--~~~~pl~~~~~~y~v~l~~i~v~g~~~~~~~~~~~~  270 (411)
                      .+|       .++||+|+.+...   ..|.|+|||.+.. +.  ..|+|+ ....+|.|.++++.|+|+.+...      
T Consensus       182 ~~l~~~~~i~~~~fs~~l~~~~~---~~g~l~~Gg~d~~~~~~~l~~~p~-~~~~~w~v~~~~i~v~g~~~~~~------  251 (370)
T d3psga_         182 DNLWDQGLVSQDLFSVYLSSNDD---SGSVVLLGGIDSSYYTGSLNWVPV-SVEGYWQITLDSITMDGETIACS------  251 (370)
T ss_dssp             HHHHHTTCSSSSEEEEEEC--------CEEEEETCCCGGGBSSCCEEEEC-SEETTEEEEECEEESSSSEEECT------
T ss_pred             hhhhhhcccccceeEEEeecCCC---CCceEecCCcCchhcccceeEEee-cccceEEEEEeeEEeCCeEEecC------
Confidence            443       6899999987532   3489999996533 33  458898 56679999999999999887654      


Q ss_pred             cCCCCcEEEecccccccccHHHHHHHHHHHHHHhhcCCCcCCCCCC-CCccccccCCCccCCCeEEEEEcCCcEEEEcCC
Q 038667          271 DDSGGGVMIDSGTDVTWLVKEAYEALRDEVMIRLEGEQMRSYSWPD-KLCYHGIMSSDLKGFPTVRFHFRGGAKLALEKD  349 (411)
Q Consensus       271 ~~~~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~g~~~~~~~~~~-~~C~~~~~~~~~~~~P~i~~~f~~g~~~~l~~~  349 (411)
                        .+..+||||||++++||++++++|+++|.+...      ..... .+|+..      ..+|+|+|+|+ |+++.|+|+
T Consensus       252 --~~~~aiiDSGTs~~~lp~~~~~~i~~~l~~~~~------~~~~~~~~C~~~------~~~P~l~f~f~-g~~~~l~~~  316 (370)
T d3psga_         252 --GGCQAIVDTGTSLLTGPTSAIANIQSDIGASEN------SDGEMVISCSSI------DSLPDIVFTID-GVQYPLSPS  316 (370)
T ss_dssp             --TCEEEEECTTCCSEEEEHHHHHHHHHHTTCEEC------TTCCEECCGGGG------GGCCCEEEEET-TEEEEECHH
T ss_pred             --CCccEEEecCCceEeCCHHHHHHHHHHhCCeee------cCCcEEEecccc------CCCceEEEEEC-CEEEEEChH
Confidence              246899999999999999999999999853221      11112 789854      27899999997 999999999


Q ss_pred             ceEEEcCCCeEEEE-EEeCCCCCCcccceeeehhhcceeEEEEECCCCEEEEecCC
Q 038667          350 SMFYQPRPDAFCMA-VNPASINNRYVNFSLIGMMAQQFYNVGYDIGRKQKTFQRMD  404 (411)
Q Consensus       350 ~y~~~~~~~~~C~~-~~~~~~~~~~~~~~IlG~~fl~~~yvvfD~~~~riGfa~~~  404 (411)
                      +|+++.++  .|+. +.........++.||||++|||++|+|||++++||||||+.
T Consensus       317 ~yi~~~~~--~c~~~~~~~~~~~~~~~~~ILG~~flr~~y~vfD~~~~~IGfAp~a  370 (370)
T d3psga_         317 AYILQDDD--SCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPVA  370 (370)
T ss_dssp             HHEEECSS--CEEESEEEECCCTTSCCEEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred             HeEEEcCC--eEEEEEEEcccCCCCCCcEEECHHhhcCEEEEEECCCCEEEEEecC
Confidence            99997533  3643 43322111223469999999999999999999999999973

PyMOL of d3psga_

>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]}	Back information, alignment and structure

>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]}	Back information, alignment and structure

>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]}	Back information, alignment and structure

>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]}	Back information, alignment and structure

>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]}	Back information, alignment and structure

>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]}	Back information, alignment and structure

>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]}	Back information, alignment and structure

>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]}	Back information, alignment and structure

>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]}	Back information, alignment and structure

>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]}	Back information, alignment and structure

>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]}	Back information, alignment and structure

>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]}	Back information, alignment and structure

>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]}	Back information, alignment and structure