Citrus Sinensis ID: 038699

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------
Protein Sequence
MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCGKVQGLRPCNALSTDKGGGHKDNKLVVAIVAPLA
Secondary Structure (PSIPRED)
cEEEcccccEEcccHHHHccccccEEEccccEEcccccccccccccccccccccccccccccHHHHccccccccccccccccccccHHHHccccccccccccccccccccHHHcccHHHHHHHccccccccccccHHHHcccccccccccccccccccHHHHHccccccEEEccccccccccccccccccccHHHHccccccccccccccccccccccccccccccEEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccccEEccccccccccccccEEEcccccccccccccccccccccEEEcccccccEEccccccccccccEEEcccccccEEccccccccccccEEEccccccccccHHHHcccccccEEEEccccEEEEEccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHcccccccEEEccccccccccccccccccccEEEcccccccccccHHHHccc
Coil and Loop (DISEMBL)
mlglagnsiggkipaeIGSLSQLVELHLssnqlsgeipahignltelstlslngnnisgqipeeiggllnldsldlsmnrlsgpipnqigelRDLRILNLSqnnligtipfqignlvglqdlqdlsynsltgeipaqlgkltrlqslnlshnnlsgeipASLSSMLSLVAVNLSynnlegplpdgsvfsssqssaftnnkdlcgkvqglrpcnalstdkggghkdnKLVVAIVAPLA
Flexible Loop (DISEMBL)
mlglagnsiggkiPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCGKVQGLRPCNAlstdkggghkdnkLVVAIVAPLA
Low Complexity Region (SEG)
MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGllnldsldlsmnrlsGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQslnlshnnlsGEIPaslssmlslvavnlsYNNLEGPLPDGsvfsssqssAFTNNKDLCGKVQGLRPCNALSTDKGGGHKDNKLVVAIVAPLA
Disordered region (IsUnstruct)
*******************LSQLVELHL****LSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSH******I**SLSSMLSLVAVNLSYNNL***********************LCGKVQGLRPCN*************KLVVAIV****
Disordered Region (DISOPRED)
MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCGKVQ**********************VAIVAPLA
Disordered Region (DISEMBL)
MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCGKVQGLRPCNALSTDKGGGHKDNKLVVAIVAPLA
Disordered Region (DISPRO)
MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCGKVQGLRPCNALSTDKGGGHKDNKLVVAIVAPLA
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCGKVQGLRPCNALSTDKGGGHKDNKLVVAIVAPLA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	237	2.2.26 [Sep-21-2011]
Q8VZG8	1045	Probable LRR receptor-lik	yes	no	0.970	0.220	0.495	8e-54
Q9LP24	1120	Probable leucine-rich rep	no	no	0.966	0.204	0.468	5e-47
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.848	0.160	0.492	8e-43
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.966	0.183	0.437	7e-41
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.848	0.182	0.460	7e-39
O49318	1124	Probable leucine-rich rep	no	no	0.877	0.185	0.397	6e-38
Q00874	372	DNA-damage-repair/tolerat	no	no	0.856	0.545	0.434	6e-38
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.957	0.205	0.445	9e-38
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.873	0.173	0.409	6e-36
C0LGF5	1072	Probable LRR receptor-lik	no	no	0.983	0.217	0.373	3e-35

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  210 bits (534), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 117/236 (49%), Positives = 156/236 (66%), Gaps = 6/236 (2%)

Query: 4   LAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPE 63
           L+ NSI G IP EI +++QL +L LSSN+++GE+P  I N+  +S L LNGN +SG+IP 
Sbjct: 485 LSNNSITGAIPPEIWNMTQLSQLDLSSNRITGELPESISNINRISKLQLNGNRLSGKIPS 544

Query: 64  EIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQ 123
            I  L NL+ LDLS NR S  IP  +  L  L  +NLS+N+L  TIP  +  L  LQ L 
Sbjct: 545 GIRLLTNLEYLDLSSNRFSSEIPPTLNNLPRLYYMNLSRNDLDQTIPEGLTKLSQLQML- 603

Query: 124 DLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLP 183
           DLSYN L GEI +Q   L  L+ L+LSHNNLSG+IP S   ML+L  V++S+NNL+GP+P
Sbjct: 604 DLSYNQLDGEISSQFRSLQNLERLDLSHNNLSGQIPPSFKDMLALTHVDVSHNNLQGPIP 663

Query: 184 DGSVFSSSQSSAFTNNKDLCGKV---QGLRPCNALSTDKGGGHKDNKLVVAIVAPL 236
           D + F ++   AF  NKDLCG V   QGL+PC+  S+ K   HKD  L++ I+ P+
Sbjct: 664 DNAAFRNAPPDAFEGNKDLCGSVNTTQGLKPCSITSSKK--SHKDRNLIIYILVPI 717

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  187 bits (476), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 111/237 (46%), Positives = 144/237 (60%), Gaps = 8/237 (3%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L ++ N+I G IP EI +++QLVEL LS+N L GE+P  IGNLT LS L LNGN +SG++
Sbjct: 563 LIMSNNNITGAIPTEIWNMTQLVELDLSTNNLFGELPEAIGNLTNLSRLRLNGNQLSGRV 622

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
           P  +  L NL+SLDLS N  S  IP        L  +NLS+N   G+IP ++  L  L  
Sbjct: 623 PAGLSFLTNLESLDLSSNNFSSEIPQTFDSFLKLHDMNLSRNKFDGSIP-RLSKLTQLTQ 681

Query: 122 LQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGP 181
           L DLS+N L GEIP+QL  L  L  L+LSHNNLSG IP +   M++L  V++S N LEGP
Sbjct: 682 L-DLSHNQLDGEIPSQLSSLQSLDKLDLSHNNLSGLIPTTFEGMIALTNVDISNNKLEGP 740

Query: 182 LPDGSVFSSSQSSAFTNNKDLCGKV--QGLRPCNALSTDKGGGHKDNKLVVAIVAPL 236
           LPD   F  + + A   N  LC  +  Q L+PC  L   K  G+    LVV I+ P+
Sbjct: 741 LPDTPTFRKATADALEENIGLCSNIPKQRLKPCRELKKPKKNGN----LVVWILVPI 793

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  173 bits (439), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 100/203 (49%), Positives = 131/203 (64%), Gaps = 2/203 (0%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           + L  N + G IP  +G L  L EL LSSN+  G +P  I +LT + TL L+GN+++G I
Sbjct: 653 IDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSI 712

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
           P+EIG L  L++L+L  N+LSGP+P+ IG+L  L  L LS+N L G IP +IG L  LQ 
Sbjct: 713 PQEIGNLQALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQS 772

Query: 122 LQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGP 181
             DLSYN+ TG IP+ +  L +L+SL+LSHN L GE+P  +  M SL  +NLSYNNLEG 
Sbjct: 773 ALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGK 832

Query: 182 LPDGSVFSSSQSSAFTNNKDLCG 204
           L     FS  Q+ AF  N  LCG
Sbjct: 833 LKKQ--FSRWQADAFVGNAGLCG 853

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  167 bits (423), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 102/233 (43%), Positives = 143/233 (61%), Gaps = 4/233 (1%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           + L  N + G IP  +G LSQL EL LSSNQ    +P  + N T+L  LSL+GN+++G I
Sbjct: 652 IDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSI 711

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
           P+EIG L  L+ L+L  N+ SG +P  +G+L  L  L LS+N+L G IP +IG L  LQ 
Sbjct: 712 PQEIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQS 771

Query: 122 LQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGP 181
             DLSYN+ TG+IP+ +G L++L++L+LSHN L+GE+P S+  M SL  +N+S+NNL G 
Sbjct: 772 ALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGK 831

Query: 182 LPDGSVFSSSQSSAFTNNKDLCGKVQGLRPCNALSTDKGGGHKDNKLVVAIVA 234
           L     FS   + +F  N  LCG    L  CN + ++        + VV I A
Sbjct: 832 LKKQ--FSRWPADSFLGNTGLCGS--PLSRCNRVRSNNKQQGLSARSVVIISA 880

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  160 bits (405), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 93/202 (46%), Positives = 130/202 (64%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L LA N+  G+IP EIG+L+++V  ++SSNQL+G IP  +G+   +  L L+GN  SG I
Sbjct: 504 LRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELGSCVTIQRLDLSGNKFSGYI 563

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
            +E+G L+ L+ L LS NRL+G IP+  G+L  L  L L  N L   IP ++G L  LQ 
Sbjct: 564 AQELGQLVYLEILRLSDNRLTGEIPHSFGDLTRLMELQLGGNLLSENIPVELGKLTSLQI 623

Query: 122 LQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGP 181
             ++S+N+L+G IP  LG L  L+ L L+ N LSGEIPAS+ +++SL+  N+S NNL G 
Sbjct: 624 SLNISHNNLSGTIPDSLGNLQMLEILYLNDNKLSGEIPASIGNLMSLLICNISNNNLVGT 683

Query: 182 LPDGSVFSSSQSSAFTNNKDLC 203
           +PD +VF    SS F  N  LC
Sbjct: 684 VPDTAVFQRMDSSNFAGNHGLC 705

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  157 bits (397), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 93/234 (39%), Positives = 128/234 (54%), Gaps = 26/234 (11%)

Query: 4   LAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPE 63
           L  N   G +P EIG+  +L  LHL++NQ S  +P  I  L+ L T +++ N+++G IP 
Sbjct: 500 LDQNRFSGPLPPEIGTCQKLQRLHLAANQFSSNLPNEISKLSNLVTFNVSSNSLTGPIPS 559

Query: 64  EIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQ 123
           EI     L  LDLS N   G +P ++G L  L IL LS+N   G IPF IGNL  L +LQ
Sbjct: 560 EIANCKMLQRLDLSRNSFIGSLPPELGSLHQLEILRLSENRFSGNIPFTIGNLTHLTELQ 619

Query: 124 ------------------------DLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIP 159
                                   +LSYN  +GEIP ++G L  L  L+L++N+LSGEIP
Sbjct: 620 MGGNLFSGSIPPQLGLLSSLQIAMNLSYNDFSGEIPPEIGNLHLLMYLSLNNNHLSGEIP 679

Query: 160 ASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCGKVQGLRPCN 213
            +  ++ SL+  N SYNNL G LP   +F +   ++F  NK LCG    LR C+
Sbjct: 680 TTFENLSSLLGCNFSYNNLTGQLPHTQIFQNMTLTSFLGNKGLCGG--HLRSCD 731

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q00874|DR100_ARATH DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2

 Score =  157 bits (397), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 99/228 (43%), Positives = 135/228 (59%), Gaps = 25/228 (10%)

Query: 1   MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNI--- 57
           +L LAGN I G+IPAEIG LS+L  L+L+ NQ+SGEIPA + +L EL  L L  N I   
Sbjct: 139 ILDLAGNKITGEIPAEIGKLSKLAVLNLAENQMSGEIPASLTSLIELKHLELTENGITGV 198

Query: 58  ---------------------SGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLR 96
                                +G IPE I G+  L  LDLS N + GPIP  +G ++ L 
Sbjct: 199 IPADFGSLKMLSRVLLGRNELTGSIPESISGMERLADLDLSKNHIEGPIPEWMGNMKVLS 258

Query: 97  ILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSG 156
           +LNL  N+L G IP  + +  GL D+ +LS N+L G IP   G  T L SL+LSHN+LSG
Sbjct: 259 LLNLDCNSLTGPIPGSLLSNSGL-DVANLSRNALEGTIPDVFGSKTYLVSLDLSHNSLSG 317

Query: 157 EIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCG 204
            IP SLSS   +  +++S+N L G +P G  F   ++++F++N+ LCG
Sbjct: 318 RIPDSLSSAKFVGHLDISHNKLCGRIPTGFPFDHLEATSFSDNQCLCG 365

This protein is able to complement bacterial recA mutations, but its native function in the plant is not known.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  157 bits (396), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 107/240 (44%), Positives = 146/240 (60%), Gaps = 13/240 (5%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L LA N   G++P EIG LSQL  L++SSN+L+GE+P+ I N   L  L +  NN SG +
Sbjct: 510 LQLADNGFTGELPREIGMLSQLGTLNISSNKLTGEVPSEIFNCKMLQRLDMCCNNFSGTL 569

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
           P E+G L  L+ L LS N LSG IP  +G L  L  L +  N   G+IP ++G+L GLQ 
Sbjct: 570 PSEVGSLYQLELLKLSNNNLSGTIPVALGNLSRLTELQMGGNLFNGSIPRELGSLTGLQI 629

Query: 122 LQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGP 181
             +LSYN LTGEIP +L  L  L+ L L++NNLSGEIP+S +++ SL+  N SYN+L GP
Sbjct: 630 ALNLSYNKLTGEIPPELSNLVMLEFLLLNNNNLSGEIPSSFANLSSLLGYNFSYNSLTGP 689

Query: 182 LPDGSVFSSSQSSAFTNNKDLCG-------KVQGLRPCNALSTDKGGGHKDNKLVVAIVA 234
           +P   +  +   S+F  N+ LCG       + Q   P    ST K GG + +K ++AI A
Sbjct: 690 IP---LLRNISMSSFIGNEGLCGPPLNQCIQTQPFAPSQ--STGKPGGMRSSK-IIAITA 743

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  150 bits (380), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 95/232 (40%), Positives = 135/232 (58%), Gaps = 25/232 (10%)

Query: 1   MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ 60
           +  L+ N + G IP E+G    LVE+ LS+N LSGEIPA +  LT L+ L L+GN ++G 
Sbjct: 584 IFDLSYNRLSGPIPEELGECLVLVEISLSNNHLSGEIPASLSRLTNLTILDLSGNALTGS 643

Query: 61  IPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQ 120
           IP+E+G  L L  L+L+ N+L+G IP   G L  L  LNL++N L G +P  +GNL  L 
Sbjct: 644 IPKEMGNSLKLQGLNLANNQLNGHIPESFGLLGSLVKLNLTKNKLDGPVPASLGNLKELT 703

Query: 121 DLQDLSYNSL------------------------TGEIPAQLGKLTRLQSLNLSHNNLSG 156
            + DLS+N+L                        TGEIP++LG LT+L+ L++S N LSG
Sbjct: 704 HM-DLSFNNLSGELSSELSTMEKLVGLYIEQNKFTGEIPSELGNLTQLEYLDVSENLLSG 762

Query: 157 EIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCGKVQG 208
           EIP  +  + +L  +NL+ NNL G +P   V      +  + NK+LCG+V G
Sbjct: 763 EIPTKICGLPNLEFLNLAKNNLRGEVPSDGVCQDPSKALLSGNKELCGRVVG 814

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGF5|Y1341_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g34110 OS=Arabidopsis thaliana GN=At1g34110 PE=2 SV=2

 Score =  148 bits (374), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 97/260 (37%), Positives = 139/260 (53%), Gaps = 27/260 (10%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L +  N + G+IP EIG L  LV L L  N  SG +P  I N+T L  L ++ N I+G I
Sbjct: 457 LRVGENQLSGQIPKEIGELQNLVFLDLYMNHFSGGLPYEISNITVLELLDVHNNYITGDI 516

Query: 62  PEEIGGLLNLDSLDLSMNRLSG------------------------PIPNQIGELRDLRI 97
           P ++G L+NL+ LDLS N  +G                         IP  I  L+ L +
Sbjct: 517 PAQLGNLVNLEQLDLSRNSFTGNIPLSFGNLSYLNKLILNNNLLTGQIPKSIKNLQKLTL 576

Query: 98  LNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGE 157
           L+LS N+L G IP ++G +  L    DLSYN+ TG IP     LT+LQSL+LS N+L G+
Sbjct: 577 LDLSYNSLSGEIPQELGQVTSLTINLDLSYNTFTGNIPETFSDLTQLQSLDLSSNSLHGD 636

Query: 158 IPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCGKVQGLRPCNALST 217
           I   L S+ SL ++N+S NN  GP+P    F +  ++++  N +LC  + G+  C++  T
Sbjct: 637 IKV-LGSLTSLASLNISCNNFSGPIPSTPFFKTISTTSYLQNTNLCHSLDGIT-CSS-HT 693

Query: 218 DKGGGHKDNKLVVAIVAPLA 237
            +  G K  K+V      LA
Sbjct: 694 GQNNGVKSPKIVALTAVILA 713

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
255539801	949	receptor protein kinase, putative [Ricin	0.995	0.248	0.638	8e-73
224074641	949	predicted protein [Populus trichocarpa]	0.780	0.194	0.606	1e-70
356544283	944	PREDICTED: probable LRR receptor-like se	0.995	0.25	0.594	8e-66
356544279	945	PREDICTED: probable LRR receptor-like se	0.991	0.248	0.610	3e-63
449460868	956	PREDICTED: probable LRR receptor-like se	1.0	0.247	0.550	9e-58
449521547	756	PREDICTED: probable LRR receptor-like se	1.0	0.313	0.550	1e-57
449460870	961	PREDICTED: probable LRR receptor-like se	0.978	0.241	0.525	1e-53
449515301	961	PREDICTED: probable LRR receptor-like se	0.978	0.241	0.525	2e-53
224129576	1220	predicted protein [Populus trichocarpa]	0.987	0.191	0.508	4e-53
7267528	1027	receptor protein kinase-like protein [Ar	0.970	0.223	0.495	5e-52

>gi|255539801|ref|XP_002510965.1| receptor protein kinase, putative [Ricinus communis] gi|223550080|gb|EEF51567.1| receptor protein kinase, putative [Ricinus communis]

 Score =  279 bits (713), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 152/238 (63%), Positives = 192/238 (80%), Gaps = 2/238 (0%)

Query: 1   MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ 60
           +L +AGN IGGKI  +I  L+QLV L LSSNQ+SGE+PA +G L++L  LSL GN +SGQ
Sbjct: 379 LLRIAGNMIGGKIAVQISQLNQLVVLDLSSNQISGEMPAQLGKLSKLLFLSLKGNRLSGQ 438

Query: 61  IPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQ 120
           +P EIG L +L SLDLSMN LSGPIP QIG+   L++L+L +N L GTIP+QIGNLV LQ
Sbjct: 439 VPVEIGELSDLQSLDLSMNMLSGPIPYQIGDCSRLQLLSLGKNKLNGTIPYQIGNLVALQ 498

Query: 121 DLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEG 180
           +L DLSYN LTG+IP+QLGKLT L+ LNLSHNNLSG +PASLS+MLSL+A+NLSYN+L+G
Sbjct: 499 NLLDLSYNFLTGDIPSQLGKLTSLEQLNLSHNNLSGSVPASLSNMLSLLAINLSYNSLQG 558

Query: 181 PLPDGSVFSSSQSSAFTNNKDLCGK-VQGLRPCNALSTDKGGGHKDNKLVVAIVAPLA 237
           PLPD ++F ++Q SA++NNKDLC   VQ LRPCN  +    GG+K+NK+V+A VAP+A
Sbjct: 559 PLPDSNIFHTAQPSAYSNNKDLCSAFVQVLRPCNVTTGRYNGGNKENKVVIA-VAPIA 615

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074641|ref|XP_002304404.1| predicted protein [Populus trichocarpa] gi|222841836|gb|EEE79383.1| predicted protein [Populus trichocarpa]

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 142/234 (60%), Positives = 179/234 (76%)

Query: 1   MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ 60
           +L +AGN +GGKIP E+  L+QL  + LSSNQ+ GE+PA +G L+ L  L+L  N +SGQ
Sbjct: 380 VLRVAGNLLGGKIPDEVVLLNQLRVIDLSSNQIFGELPAQLGKLSNLLVLNLKDNMLSGQ 439

Query: 61  IPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQ 120
           +P  I GL +L++LDLS+N LSGPIP QIGE   LR L+L +N L GTIP+QIGNLVGL 
Sbjct: 440 VPVGIDGLSSLENLDLSLNMLSGPIPYQIGECSKLRFLSLGRNRLNGTIPYQIGNLVGLH 499

Query: 121 DLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEG 180
           DL DL YN L+G IP+QL KLT L  LNLSHNNLSG IPASLS+MLSLVAVN SYNNLEG
Sbjct: 500 DLLDLGYNLLSGGIPSQLAKLTSLAQLNLSHNNLSGSIPASLSNMLSLVAVNFSYNNLEG 559

Query: 181 PLPDGSVFSSSQSSAFTNNKDLCGKVQGLRPCNALSTDKGGGHKDNKLVVAIVA 234
           PLPD S+F   + ++++NN+DLCG+VQGLR C   + +KGGG K +KLV+ + +
Sbjct: 560 PLPDSSIFHLVEPNSYSNNRDLCGEVQGLRRCTIRANEKGGGDKKSKLVIIVAS 613

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544283|ref|XP_003540583.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Glycine max]

 Score =  256 bits (653), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 141/237 (59%), Positives = 175/237 (73%), Gaps = 1/237 (0%)

Query: 1   MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ 60
            L +AGN + G IP EI  L QL EL LSSNQ+SGEIP  I N + L  LSL+ N +SG 
Sbjct: 374 YLNMAGNGVSGNIPGEIFQLDQLRELDLSSNQISGEIPPQIVNSSNLYELSLSDNKLSGM 433

Query: 61  IPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQ 120
           +P +IG L NL SLD+SMN L GPIP+QIG++ +L+ LN+S NN  GTIP+Q+GNL  LQ
Sbjct: 434 VPADIGKLSNLRSLDISMNMLLGPIPDQIGDIYNLQNLNMSNNNFNGTIPYQVGNLASLQ 493

Query: 121 DLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEG 180
           D  DLSYNSL+G+IP+ LGKL+ L SLN+SHNNLSG IP SLS M+SL A+NLSYNNLEG
Sbjct: 494 DFLDLSYNSLSGQIPSDLGKLSNLISLNISHNNLSGSIPDSLSEMVSLSAINLSYNNLEG 553

Query: 181 PLPDGSVFSSSQSSAFTNNKDLCGKVQGLRPCN-ALSTDKGGGHKDNKLVVAIVAPL 236
           P+P+G VF+SS     +NNKDLCG +QGLRPCN +L+   GG     K+++ I A L
Sbjct: 554 PVPEGGVFNSSHPLDLSNNKDLCGNIQGLRPCNVSLTKPNGGSSNKKKVLIPIAASL 610

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544279|ref|XP_003540581.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Glycine max]

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 144/236 (61%), Positives = 175/236 (74%), Gaps = 1/236 (0%)

Query: 1   MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ 60
           +L +AGN I G IP EI  L QL +L LSSNQ+SG+IP+ IGN   L  L+L+ N +SG 
Sbjct: 377 VLNMAGNEISGYIPGEIFQLDQLHKLDLSSNQISGDIPSQIGNSFNLYELNLSDNKLSGI 436

Query: 61  IPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQ 120
           IP EIG L NL SLDLSMN+L GPIPNQIG++ DL+ LNLS N+L GTIP+QIGNL  LQ
Sbjct: 437 IPAEIGNLSNLHSLDLSMNKLLGPIPNQIGDISDLQNLNLSNNDLNGTIPYQIGNLRDLQ 496

Query: 121 DLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEG 180
              DLSYNSL+GEIP  LGKL+ L SLN+SHNNLSG IP SLS M SL  +NLSYNNLEG
Sbjct: 497 YFLDLSYNSLSGEIPTDLGKLSNLISLNMSHNNLSGSIPHSLSEMFSLSTINLSYNNLEG 556

Query: 181 PLPDGSVFSSSQSSAFTNNKDLCGKVQGLRPCNALSTDKGGGHKDNKLVVAIVAPL 236
            +P   +F+SS     +NNKDLCG+++GL+PCN L+   GG  + NK+V+ IVA L
Sbjct: 557 MVPKSGIFNSSYPLDLSNNKDLCGQIRGLKPCN-LTNPNGGSSERNKVVIPIVASL 611

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460868|ref|XP_004148166.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Cucumis sativus]

 Score =  229 bits (583), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 131/238 (55%), Positives = 169/238 (71%), Gaps = 1/238 (0%)

Query: 1   MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ 60
           +L L GN + G+IP EI  L  LVEL LSSN LSG IP  IGNL++LS LSL  N +SG 
Sbjct: 386 LLRLTGNKVSGEIPNEITQLENLVELELSSNNLSGSIPKSIGNLSKLSVLSLRNNRLSGS 445

Query: 61  IPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQ 120
           IP E+G + NL  LDLSMN LSG IP++IG    L+ L+LS N L G+IPF+IG+LV LQ
Sbjct: 446 IPVELGSIENLAELDLSMNMLSGSIPSEIGNNVKLQSLSLSMNQLNGSIPFRIGSLVTLQ 505

Query: 121 DLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEG 180
           DL DLS+NSL+GEIP+ LG L  L++LNLS+N+LSG IP SL  M+SLV++NLS NNLEG
Sbjct: 506 DLLDLSHNSLSGEIPSLLGNLQSLENLNLSNNDLSGSIPNSLGKMVSLVSINLSNNNLEG 565

Query: 181 PLPDGSVFSSSQSSAFTNNKDLCGKVQGLRPCNA-LSTDKGGGHKDNKLVVAIVAPLA 237
           PLP+  +F +++  AF+NN+ LCG + GL  C++ ++T        NKLV  +V  L 
Sbjct: 566 PLPNEGIFKTAKLEAFSNNRGLCGNMNGLPHCSSVVNTQDDKESSKNKLVKVLVPALV 623

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449521547|ref|XP_004167791.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like, partial [Cucumis sativus]

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 131/238 (55%), Positives = 169/238 (71%), Gaps = 1/238 (0%)

Query: 1   MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ 60
           +L L GN + G+IP EI  L  LVEL LSSN LSG IP  IGNL++LS LSL  N +SG 
Sbjct: 386 LLRLTGNKVSGEIPNEITQLENLVELELSSNNLSGSIPKSIGNLSKLSVLSLRNNRLSGS 445

Query: 61  IPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQ 120
           IP E+G + NL  LDLSMN LSG IP++IG    L+ L+LS N L G+IPF+IG+LV LQ
Sbjct: 446 IPVELGSIENLAELDLSMNMLSGSIPSEIGNNVKLQSLSLSMNQLNGSIPFRIGSLVTLQ 505

Query: 121 DLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEG 180
           DL DLS+NSL+GEIP+ LG L  L++LNLS+N+LSG IP SL  M+SLV++NLS NNLEG
Sbjct: 506 DLLDLSHNSLSGEIPSLLGNLQSLENLNLSNNDLSGSIPNSLGKMVSLVSINLSNNNLEG 565

Query: 181 PLPDGSVFSSSQSSAFTNNKDLCGKVQGLRPCNA-LSTDKGGGHKDNKLVVAIVAPLA 237
           PLP+  +F +++  AF+NN+ LCG + GL  C++ ++T        NKLV  +V  L 
Sbjct: 566 PLPNEGIFKTAKLEAFSNNRGLCGNMNGLPHCSSVVNTQDDKESSKNKLVKVLVPALV 623

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460870|ref|XP_004148167.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Cucumis sativus]

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 124/236 (52%), Positives = 157/236 (66%), Gaps = 4/236 (1%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L +  N + GKIP EI  L  LVEL LS N LSG IP  I NL++LS L L  N  SG +
Sbjct: 384 LRIDNNKVSGKIPEEIIKLKNLVELELSYNNLSGSIPKSIRNLSKLSMLGLRDNRFSGSL 443

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
           P EIG L NL  LD+S N LSG IP++IG+L  L+ L L  N L G+IPF IG L  +Q 
Sbjct: 444 PIEIGSLENLKCLDISKNMLSGSIPSEIGDLSRLQFLGLRGNQLNGSIPFNIGLLDSIQI 503

Query: 122 LQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGP 181
           + DLS NSL+GEIP+  G L  L++LNLSHNNLSG +P SL +M SLV+V+LSYN+LEGP
Sbjct: 504 MIDLSNNSLSGEIPSSFGNLKSLENLNLSHNNLSGSVPNSLGTMFSLVSVDLSYNSLEGP 563

Query: 182 LPDGSVFSSSQSSAFTNNKDLCGK-VQGLRPCNALS---TDKGGGHKDNKLVVAIV 233
           LPD  +F+ +  SAF++NK LCG  ++GL  CN       D  G  K++KLV  ++
Sbjct: 564 LPDEGIFTRADPSAFSHNKGLCGDNIKGLPSCNDDRNGLNDNSGNIKESKLVTILI 619

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449515301|ref|XP_004164688.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Cucumis sativus]

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 124/236 (52%), Positives = 157/236 (66%), Gaps = 4/236 (1%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L +  N + GKIP EI  L  LVEL LS N LSG IP  I NL++LS L L  N  SG +
Sbjct: 384 LRIDNNKVSGKIPEEIIKLKNLVELELSYNNLSGSIPKSIRNLSKLSMLGLRDNRFSGSL 443

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
           P EIG L NL  LD+S N LSG IP++IG+L  L+ L L  N L G+IPF IG L  +Q 
Sbjct: 444 PIEIGSLENLKCLDISKNMLSGSIPSEIGDLSRLQFLGLRGNQLNGSIPFNIGLLDSIQI 503

Query: 122 LQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGP 181
           + DLS NSL+GEIP+  G L  L++LNLSHNNLSG +P SL +M SLV+V+LSYN+LEGP
Sbjct: 504 MIDLSNNSLSGEIPSSFGNLKSLENLNLSHNNLSGSVPNSLGTMFSLVSVDLSYNSLEGP 563

Query: 182 LPDGSVFSSSQSSAFTNNKDLCGK-VQGLRPCNALS---TDKGGGHKDNKLVVAIV 233
           LPD  +F+ +  SAF++NK LCG  ++GL  CN       D  G  K++KLV  ++
Sbjct: 564 LPDEGIFTRADPSAFSHNKGLCGDNIKGLPSCNDDRNGLNDNSGNIKESKLVTILI 619

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129576|ref|XP_002320620.1| predicted protein [Populus trichocarpa] gi|222861393|gb|EEE98935.1| predicted protein [Populus trichocarpa]

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 120/236 (50%), Positives = 162/236 (68%), Gaps = 2/236 (0%)

Query: 4   LAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPE 63
           +AGN + G IP E+G+L++L  L LS NQL G+IP  + + ++L+  +L+ N +SG IPE
Sbjct: 625 IAGNIMSGNIPPELGNLTELQNLDLSGNQLIGKIPIELFSSSKLNRFNLSNNQLSGHIPE 684

Query: 64  EIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQ 123
           E+G L  L  LD S N LSG IP ++G+ + L  L+LS N L GT+P+QIGNLV LQ + 
Sbjct: 685 EVGMLSQLQYLDFSQNNLSGRIPEELGDCQALIFLDLSNNRLNGTMPYQIGNLVALQIVL 744

Query: 124 DLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLP 183
           DLS N +TGEI +QL KLTRL+ LN+SHN+LSG IP+SL  +LSL  V++S+NNLEGPLP
Sbjct: 745 DLSQNLITGEISSQLRKLTRLEILNISHNHLSGPIPSSLQDLLSLQQVDISHNNLEGPLP 804

Query: 184 DGSVFSSSQSSAFTNNKDLCG-KVQGLRPC-NALSTDKGGGHKDNKLVVAIVAPLA 237
           D   F  + +++   N  LCG K QGL PC    S++K       KL+VAIV PL+
Sbjct: 805 DNKAFRRAPAASLVGNTGLCGEKAQGLNPCRRETSSEKHNKGNRRKLIVAIVIPLS 860

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7267528|emb|CAB78010.1| receptor protein kinase-like protein [Arabidopsis thaliana] gi|7321074|emb|CAB82121.1| receptor protein kinase-like protein [Arabidopsis thaliana]

 Score =  210 bits (534), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 117/236 (49%), Positives = 156/236 (66%), Gaps = 6/236 (2%)

Query: 4   LAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPE 63
           L+ NSI G IP EI +++QL +L LSSN+++GE+P  I N+  +S L LNGN +SG+IP 
Sbjct: 467 LSNNSITGAIPPEIWNMTQLSQLDLSSNRITGELPESISNINRISKLQLNGNRLSGKIPS 526

Query: 64  EIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQ 123
            I  L NL+ LDLS NR S  IP  +  L  L  +NLS+N+L  TIP  +  L  LQ L 
Sbjct: 527 GIRLLTNLEYLDLSSNRFSSEIPPTLNNLPRLYYMNLSRNDLDQTIPEGLTKLSQLQML- 585

Query: 124 DLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLP 183
           DLSYN L GEI +Q   L  L+ L+LSHNNLSG+IP S   ML+L  V++S+NNL+GP+P
Sbjct: 586 DLSYNQLDGEISSQFRSLQNLERLDLSHNNLSGQIPPSFKDMLALTHVDVSHNNLQGPIP 645

Query: 184 DGSVFSSSQSSAFTNNKDLCGKV---QGLRPCNALSTDKGGGHKDNKLVVAIVAPL 236
           D + F ++   AF  NKDLCG V   QGL+PC+  S+ K   HKD  L++ I+ P+
Sbjct: 646 DNAAFRNAPPDAFEGNKDLCGSVNTTQGLKPCSITSSKK--SHKDRNLIIYILVPI 699

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
TAIR|locus:2138268	1045	AT4G08850 [Arabidopsis thalian	0.970	0.220	0.389	1.6e-35
TAIR|locus:2011339	1120	AT1G35710 [Arabidopsis thalian	0.957	0.202	0.370	2.4e-30
TAIR|locus:2160791	1102	AT5G63930 [Arabidopsis thalian	0.966	0.207	0.361	8.1e-30
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.949	0.180	0.356	3.4e-29
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.962	0.182	0.369	3.4e-29
TAIR|locus:2090754	711	RLP43 "receptor like protein 4	0.599	0.199	0.440	4.9e-27
TAIR|locus:2091260	372	DRT100 "DNA-DAMAGE REPAIR/TOLE	0.864	0.551	0.359	9.4e-27
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.772	0.194	0.375	2.7e-26
TAIR|locus:2046525	1124	AT2G33170 [Arabidopsis thalian	0.974	0.205	0.326	2.8e-26
TAIR|locus:2020417	1101	AT1G17230 [Arabidopsis thalian	0.928	0.199	0.334	1.2e-25

TAIR|locus:2138268 AT4G08850 [Arabidopsis thaliana (taxid:3702)]

 Score = 395 (144.1 bits), Expect = 1.6e-35, P = 1.6e-35
 Identities = 92/236 (38%), Positives = 123/236 (52%)

Query:     4 LAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPE 63
             L+ NSI G IP EI +++QL +L LSSN+++GE+P  I N+  +S L LNGN +SG+IP 
Sbjct:   485 LSNNSITGAIPPEIWNMTQLSQLDLSSNRITGELPESISNINRISKLQLNGNRLSGKIPS 544

Query:    64 EIGGXXXXXXXXXXXXXXXGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQ 123
              I                   IP  +  L  L  +NLS+N+L  TIP  +  L  LQ L 
Sbjct:   545 GIRLLTNLEYLDLSSNRFSSEIPPTLNNLPRLYYMNLSRNDLDQTIPEGLTKLSQLQML- 603

Query:   124 DLSYNSLTGEIPAQLGKLTRLQXXXXXXXXXXGEIPXXXXXXXXXXXXXXXYNNLEGPLP 183
             DLSYN L GEI +Q   L  L+          G+IP               +NNL+GP+P
Sbjct:   604 DLSYNQLDGEISSQFRSLQNLERLDLSHNNLSGQIPPSFKDMLALTHVDVSHNNLQGPIP 663

Query:   184 DGXXXXXXXXXAFTNNKDLCGKV---QGLRPCNALSTDKGGGHKDNKLVVAIVAPL 236
             D          AF  NKDLCG V   QGL+PC+  S+ K   HKD  L++ I+ P+
Sbjct:   664 DNAAFRNAPPDAFEGNKDLCGSVNTTQGLKPCSITSSKKS--HKDRNLIIYILVPI 717

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 2.4e-30, P = 2.4e-30
 Identities = 87/235 (37%), Positives = 111/235 (47%)

Query:     4 LAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPE 63
             ++ N+I G IP EI +++QLVEL LS+N L GE+P  IGNLT LS L LNGN +SG++P 
Sbjct:   565 MSNNNITGAIPTEIWNMTQLVELDLSTNNLFGELPEAIGNLTNLSRLRLNGNQLSGRVPA 624

Query:    64 EIGGXXXXXXXXXXXXXXXGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQ 123
              +                   IP        L  +NLS+N   G+IP ++  L  L  L 
Sbjct:   625 GLSFLTNLESLDLSSNNFSSEIPQTFDSFLKLHDMNLSRNKFDGSIP-RLSKLTQLTQL- 682

Query:   124 DLSYNSLTGEIPAQLGKLTRLQXXXXXXXXXXGEIPXXXXXXXXXXXXXXXYNNLEGPLP 183
             DLS+N L GEIP+QL  L  L           G IP                N LEGPLP
Sbjct:   683 DLSHNQLDGEIPSQLSSLQSLDKLDLSHNNLSGLIPTTFEGMIALTNVDISNNKLEGPLP 742

Query:   184 DGXXXXXXXXXAFTNNKDLCGKV--QGLRPCNALSTDKGGGHKDNKLVVAIVAPL 236
             D          A   N  LC  +  Q L+PC  L   K    K+  LVV I+ P+
Sbjct:   743 DTPTFRKATADALEENIGLCSNIPKQRLKPCRELKKPK----KNGNLVVWILVPI 793

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

TAIR|locus:2160791 AT5G63930 [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 8.1e-30, P = 8.1e-30
 Identities = 86/238 (36%), Positives = 116/238 (48%)

Query:     2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
             L LA N   G++P EIG LSQL  L++SSN+L+GE+P+ I N   L  L +  NN SG +
Sbjct:   510 LQLADNGFTGELPREIGMLSQLGTLNISSNKLTGEVPSEIFNCKMLQRLDMCCNNFSGTL 569

Query:    62 PEEIGGXXXXXXXXXXXXXXXGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
             P E+G                G IP  +G L  L  L +  N   G+IP ++G+L GLQ 
Sbjct:   570 PSEVGSLYQLELLKLSNNNLSGTIPVALGNLSRLTELQMGGNLFNGSIPRELGSLTGLQI 629

Query:   122 LQDLSYNSLTGEIPAQLGKLTRLQXXXXXXXXXXGEIPXXXXXXXXXXXXXXXYNNLEGP 181
               +LSYN LTGEIP +L  L  L+          GEIP               YN+L GP
Sbjct:   630 ALNLSYNKLTGEIPPELSNLVMLEFLLLNNNNLSGEIPSSFANLSSLLGYNFSYNSLTGP 689

Query:   182 LPDGXXXXXXXXXAFTNNKDLCGK-----VQGLRPCNALSTDKGGGHKDNKLVVAIVA 234
             +P           +F  N+ LCG      +Q      + ST K GG + +K ++AI A
Sbjct:   690 IP---LLRNISMSSFIGNEGLCGPPLNQCIQTQPFAPSQSTGKPGGMRSSK-IIAITA 743

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 82/230 (35%), Positives = 113/230 (49%)

Query:     2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
             + L  N + G IP  +G LSQL EL LSSNQ    +P  + N T+L  LSL+GN+++G I
Sbjct:   652 IDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSI 711

Query:    62 PEEIGGXXXXXXXXXXXXXXXGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
             P+EIG                G +P  +G+L  L  L LS+N+L G IP +IG L  LQ 
Sbjct:   712 PQEIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQS 771

Query:   122 LQDLSYNSLTGEIPAQLGKLTRLQXXXXXXXXXXGEIPXXXXXXXXXXXXXXXYNNLEGP 181
               DLSYN+ TG+IP+ +G L++L+          GE+P               +NNL G 
Sbjct:   772 ALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGK 831

Query:   182 LPDGXXXXXXXXXAFTNNKDLCGKVQGLRPCNAL-STDKGGGHKDNKLVV 230
             L            +F  N  LCG    L  CN + S +K  G     +V+
Sbjct:   832 LKK--QFSRWPADSFLGNTGLCGSP--LSRCNRVRSNNKQQGLSARSVVI 877

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 86/233 (36%), Positives = 110/233 (47%)

Query:     2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
             + L  N + G IP  +G L  L EL LSSN+  G +P  I +LT + TL L+GN+++G I
Sbjct:   653 IDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSI 712

Query:    62 PEEIGGXXXXXXXXXXXXXXXGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
             P+EIG                GP+P+ IG+L  L  L LS+N L G IP +IG L  LQ 
Sbjct:   713 PQEIGNLQALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQS 772

Query:   122 LQDLSYNSLTGEIPAQLGKLTRLQXXXXXXXXXXGEIPXXXXXXXXXXXXXXXYNNLEGP 181
               DLSYN+ TG IP+ +  L +L+          GE+P               YNNLEG 
Sbjct:   773 ALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGK 832

Query:   182 LPDGXXXXXXXXXAFTNNKDLCGKVQGLRPCNALSTDKGGGHKDNKLVVAIVA 234
             L            AF  N  LCG    L  CN   + K       K VV I A
Sbjct:   833 LKK--QFSRWQADAFVGNAGLCGSP--LSHCNRAGS-KNQRSLSPKTVVIISA 880

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2090754 RLP43 "receptor like protein 43" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 4.9e-27, Sum P(2) = 4.9e-27
 Identities = 63/143 (44%), Positives = 78/143 (54%)

Query:     2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
             L L+ N   G++P+ IG+LS L  L L  NQ SG++P+ IGNL+ L+TL L+ N   GQ 
Sbjct:   150 LDLSFNHFSGQVPSSIGNLSHLTFLDLYCNQFSGQVPSSIGNLSHLTTLELSFNRFFGQF 209

Query:    62 PEEIGGXXXXXXXXXXXXXXXGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
             P  IGG               G IP+ IG L +L  L L +NN  G IP  IGNL  L  
Sbjct:   210 PSSIGGLSHLTTLNLFVNNFLGQIPSSIGNLSNLTSLYLCKNNFSGQIPSFIGNLSQLTR 269

Query:   122 LQDLSYNSLTGEIPAQLGKLTRL 144
             L DLS N+  GEIP  L  L  L
Sbjct:   270 L-DLSSNNFFGEIPGWLWTLPNL 291

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2091260 DRT100 "DNA-DAMAGE REPAIR/TOLERATION 100" [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 74/206 (35%), Positives = 100/206 (48%)

Query:     1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ 60
             +L LAGN I G+IPAEIG LS+L  L+L+ NQ+SGEIPA + +L EL  L L  N I+G 
Sbjct:   139 ILDLAGNKITGEIPAEIGKLSKLAVLNLAENQMSGEIPASLTSLIELKHLELTENGITGV 198

Query:    61 IPEEIGGXXXXXXXXXXXXXXXGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQ 120
             IP + G                G IP  I  +  L  L+LS+N++ G IP  +GN+  L 
Sbjct:   199 IPADFGSLKMLSRVLLGRNELTGSIPESISGMERLADLDLSKNHIEGPIPEWMGNMKVLS 258

Query:   121 DLQDLSYNSLTGEIPAQLGKLTRLQXXXXXXXXXXGEIPXXXXXXXXXXXXXXXYNNLEG 180
              L +L  NSLTG IP  L   + L           G IP               +N+L G
Sbjct:   259 -LLNLDCNSLTGPIPGSLLSNSGLDVANLSRNALEGTIPDVFGSKTYLVSLDLSHNSLSG 317

Query:   181 PLPDGXXXXXXXXXAFTNNKDLCGKV 206
              +PD             ++  LCG++
Sbjct:   318 RIPDSLSSAKFVGHLDISHNKLCGRI 343

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

GO:0009650 "UV protection" evidence=IGI

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009411 "response to UV" evidence=IGI

GO:0009507 "chloroplast" evidence=ISS

GO:0042493 "response to drug" evidence=IGI

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 308 (113.5 bits), Expect = 2.7e-26, P = 2.7e-26
 Identities = 69/184 (37%), Positives = 90/184 (48%)

Query:     1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ 60
             +L L  N + G+IP+ IG+LS L  LHLS NQ  G IP+ I NL+ L++L L+ N  SGQ
Sbjct:   129 VLDLTQNDLDGEIPSSIGNLSHLTSLHLSYNQFLGLIPSSIENLSRLTSLHLSSNQFSGQ 188

Query:    61 IPEEIGGXXXXXXXXXXXXXXXGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQ 120
             IP  IG                G IP+ IG L +L  L+L  N+  G IP  IGNL  L 
Sbjct:   189 IPSSIGNLSHLTSLELSSNQFSGQIPSSIGNLSNLTFLSLPSNDFFGQIPSSIGNLARLT 248

Query:   121 DLQDLSYNSLTGEIPAQLGKLTRLQXXXXXXXXXXGEIPXXXXXXXXXXXXXXXYNNLEG 180
              L  LSYN+  GEIP+  G L +L           G +P               +N   G
Sbjct:   249 YLY-LSYNNFVGEIPSSFGNLNQLIVLQVDSNKLSGNVPISLLNLTRLSALLLSHNQFTG 307

Query:   181 PLPD 184
              +P+
Sbjct:   308 TIPN 311

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046525 AT2G33170 [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 2.8e-26, P = 2.8e-26
 Identities = 77/236 (32%), Positives = 106/236 (44%)

Query:     2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
             L LA N     +P EI  LS LV  ++SSN L+G IP+ I N   L  L L+ N+  G +
Sbjct:   522 LHLAANQFSSNLPNEISKLSNLVTFNVSSNSLTGPIPSEIANCKMLQRLDLSRNSFIGSL 581

Query:    62 PEEIGGXXXXXXXXXXXXXXXGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
             P E+G                G IP  IG L  L  L +  N   G+IP Q+G L  LQ 
Sbjct:   582 PPELGSLHQLEILRLSENRFSGNIPFTIGNLTHLTELQMGGNLFSGSIPPQLGLLSSLQI 641

Query:   122 LQDLSYNSLTGEIPAQLGKLTRLQXXXXXXXXXXGEIPXXXXXXXXXXXXXXXYNNLEGP 181
               +LSYN  +GEIP ++G L  L           GEIP               YNNL G 
Sbjct:   642 AMNLSYNDFSGEIPPEIGNLHLLMYLSLNNNHLSGEIPTTFENLSSLLGCNFSYNNLTGQ 701

Query:   182 LPDGXXXXXXXXXAFTNNKDLCG-KVQGLRPCNA----LSTDKGGGHKDNKLVVAI 232
             LP           +F  NK LCG  ++   P ++    +S+ K G  +  ++++ +
Sbjct:   702 LPHTQIFQNMTLTSFLGNKGLCGGHLRSCDPSHSSWPHISSLKAGSARRGRIIIIV 757

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006486 "protein glycosylation" evidence=RCA

TAIR|locus:2020417 AT1G17230 [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 1.2e-25, P = 1.2e-25
 Identities = 76/227 (33%), Positives = 104/227 (45%)

Query:     2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
             L LA N+  G+IP EIG+L+++V  ++SSNQL+G IP  +G+   +  L L+GN  SG I
Sbjct:   504 LRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELGSCVTIQRLDLSGNKFSGYI 563

Query:    62 PEEIGGXXXXXXXXXXXXXXXGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
              +E+G                G IP+  G+L  L  L L  N L   IP ++G L  LQ 
Sbjct:   564 AQELGQLVYLEILRLSDNRLTGEIPHSFGDLTRLMELQLGGNLLSENIPVELGKLTSLQI 623

Query:   122 LQDLSYNSLTGEIPAQLGKLTRLQXXXXXXXXXXGEIPXXXXXXXXXXXXXXXYNNLEGP 181
               ++S+N+L+G IP  LG L  L+          GEIP                NNL G 
Sbjct:   624 SLNISHNNLSGTIPDSLGNLQMLEILYLNDNKLSGEIPASIGNLMSLLICNISNNNLVGT 683

Query:   182 LPDGXXXXXXXXXAFTNNKDLCGKVQGLRPCNALSTDKGGGHKDNKL 228
             +PD           F  N  LC   +    C  L       H D+KL
Sbjct:   684 VPDTAVFQRMDSSNFAGNHGLCNSQRS--HCQPLVP-----HSDSKL 723

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00030806 hypothetical protein (949 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	237
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-39
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-39
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-39
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-37
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-31
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-29
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-28
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-26
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-25
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-24
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-17
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-14
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-07
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	1e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  144 bits (364), Expect = 2e-39
 Identities = 86/180 (47%), Positives = 108/180 (60%), Gaps = 1/180 (0%)

Query: 4   LAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPE 63
           L  N++ G+IP EIG L+ L  L L  N L+G IP+ +GNL  L  L L  N +SG IP 
Sbjct: 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP 278

Query: 64  EIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQ 123
            I  L  L SLDLS N LSG IP  + +L++L IL+L  NN  G IP  + +L  LQ LQ
Sbjct: 279 SIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQ 338

Query: 124 DLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLP 183
            L  N  +GEIP  LGK   L  L+LS NNL+GEIP  L S  +L  + L  N+LEG +P
Sbjct: 339 -LWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIP 397

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  143 bits (362), Expect = 4e-39
 Identities = 82/184 (44%), Positives = 108/184 (58%), Gaps = 1/184 (0%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L L+ N + G+IP +IGS S L  L L  N L G+IP  + NLT L  L+L  N + GQI
Sbjct: 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI 204

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
           P E+G + +L  + L  N LSG IP +IG L  L  L+L  NNL G IP  +GNL  LQ 
Sbjct: 205 PRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQY 264

Query: 122 LQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGP 181
           L  L  N L+G IP  +  L +L SL+LS N+LSGEIP  +  + +L  ++L  NN  G 
Sbjct: 265 LF-LYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGK 323

Query: 182 LPDG 185
           +P  
Sbjct: 324 IPVA 327

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  142 bits (359), Expect = 9e-39
 Identities = 83/183 (45%), Positives = 116/183 (63%), Gaps = 3/183 (1%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L L+ N+  G IP   GS+  L  L LS+N LSGEIP  IG+ + L  L L GN + G+I
Sbjct: 123 LNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKI 180

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
           P  +  L +L+ L L+ N+L G IP ++G+++ L+ + L  NNL G IP++IG L  L  
Sbjct: 181 PNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNH 240

Query: 122 LQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGP 181
           L DL YN+LTG IP+ LG L  LQ L L  N LSG IP S+ S+  L++++LS N+L G 
Sbjct: 241 L-DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE 299

Query: 182 LPD 184
           +P+
Sbjct: 300 IPE 302

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  138 bits (349), Expect = 2e-37
 Identities = 82/183 (44%), Positives = 116/183 (63%), Gaps = 4/183 (2%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLT-ELSTLSLNGNNISGQ 60
           + L+G +I GKI + I  L  +  ++LS+NQLSG IP  I   +  L  L+L+ NN +G 
Sbjct: 74  IDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGS 133

Query: 61  IPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQ 120
           IP   G + NL++LDLS N LSG IPN IG    L++L+L  N L+G IP  + NL  L+
Sbjct: 134 IPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLE 191

Query: 121 DLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEG 180
            L  L+ N L G+IP +LG++  L+ + L +NNLSGEIP  +  + SL  ++L YNNL G
Sbjct: 192 FLT-LASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG 250

Query: 181 PLP 183
           P+P
Sbjct: 251 PIP 253

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  120 bits (303), Expect = 3e-31
 Identities = 78/184 (42%), Positives = 102/184 (55%), Gaps = 1/184 (0%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L L  N++ G IP+ +G+L  L  L L  N+LSG IP  I +L +L +L L+ N++SG+I
Sbjct: 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
           PE +  L NL+ L L  N  +G IP  +  L  L++L L  N   G IP  +G    L  
Sbjct: 301 PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTV 360

Query: 122 LQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGP 181
           L DLS N+LTGEIP  L     L  L L  N+L GEIP SL +  SL  V L  N+  G 
Sbjct: 361 L-DLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE 419

Query: 182 LPDG 185
           LP  
Sbjct: 420 LPSE 423

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  115 bits (290), Expect = 1e-29
 Identities = 78/214 (36%), Positives = 102/214 (47%), Gaps = 52/214 (24%)

Query: 1   MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ 60
           ML LA N   G +P   GS  +L  L LS NQ SG +P  +G+L+EL  L L+ N +SG+
Sbjct: 456 MLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGE 514

Query: 61  IPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQ 120
           IP+E+     L SLDLS N+LS                                      
Sbjct: 515 IPDELSSCKKLVSLDLSHNQLS-------------------------------------- 536

Query: 121 DLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEG 180
                      G+IPA   ++  L  L+LS N LSGEIP +L ++ SLV VN+S+N+L G
Sbjct: 537 -----------GQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585

Query: 181 PLPDGSVFSSSQSSAFTNNKDLCG--KVQGLRPC 212
            LP    F +  +SA   N DLCG     GL PC
Sbjct: 586 SLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPC 619

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  110 bits (277), Expect = 8e-28
 Identities = 75/186 (40%), Positives = 102/186 (54%), Gaps = 7/186 (3%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L L  N + G IP  I SL +L+ L LS N LSGEIP  +  L  L  L L  NN +G+I
Sbjct: 265 LFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI 324

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQI---GNLVG 118
           P  +  L  L  L L  N+ SG IP  +G+  +L +L+LS NNL G IP  +   GNL  
Sbjct: 325 PVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFK 384

Query: 119 LQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 178
           L     L  NSL GEIP  LG    L+ + L  N+ SGE+P+  + +  +  +++S NNL
Sbjct: 385 LI----LFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNL 440

Query: 179 EGPLPD 184
           +G +  
Sbjct: 441 QGRINS 446

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score =  106 bits (266), Expect = 2e-26
 Identities = 59/142 (41%), Positives = 79/142 (55%), Gaps = 24/142 (16%)

Query: 71  LDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSL 130
           +D L L    L G IPN I +LR L+ +NLS N++ G IP  +G++  L+ L DLSYNS 
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVL-DLSYNSF 478

Query: 131 TGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSS 190
            G IP  LG+LT L+ LNL+ N+LSG +PA+L                 G L   + F+ 
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALG----------------GRLLHRASFN- 521

Query: 191 SQSSAFTNNKDLCGKVQGLRPC 212
                FT+N  LCG + GLR C
Sbjct: 522 -----FTDNAGLCG-IPGLRAC 537

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  103 bits (258), Expect = 3e-25
 Identities = 69/185 (37%), Positives = 98/185 (52%), Gaps = 2/185 (1%)

Query: 1   MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ 60
           +L L  N+  GKIP  + SL +L  L L SN+ SGEIP ++G    L+ L L+ NN++G+
Sbjct: 312 ILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGE 371

Query: 61  IPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQ 120
           IPE +    NL  L L  N L G IP  +G  R LR + L  N+  G +P +   L  L 
Sbjct: 372 IPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL-PLV 430

Query: 121 DLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEG 180
              D+S N+L G I ++   +  LQ L+L+ N   G +P S  S   L  ++LS N   G
Sbjct: 431 YFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSK-RLENLDLSRNQFSG 489

Query: 181 PLPDG 185
            +P  
Sbjct: 490 AVPRK 494

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 99.2 bits (247), Expect = 7e-24
 Identities = 61/142 (42%), Positives = 89/142 (62%), Gaps = 4/142 (2%)

Query: 43  NLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGEL-RDLRILNLS 101
           N + + ++ L+G NISG+I   I  L  + +++LS N+LSGPIP+ I      LR LNLS
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 102 QNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPAS 161
            NN  G+IP   G++  L+ L DLS N L+GEIP  +G  + L+ L+L  N L G+IP S
Sbjct: 127 NNNFTGSIPR--GSIPNLETL-DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS 183

Query: 162 LSSMLSLVAVNLSYNNLEGPLP 183
           L+++ SL  + L+ N L G +P
Sbjct: 184 LTNLTSLEFLTLASNQLVGQIP 205

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 79.9 bits (197), Expect = 3e-17
 Identities = 39/89 (43%), Positives = 56/89 (62%)

Query: 26  LHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPI 85
           L L +  L G IP  I  L  L +++L+GN+I G IP  +G + +L+ LDLS N  +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 86  PNQIGELRDLRILNLSQNNLIGTIPFQIG 114
           P  +G+L  LRILNL+ N+L G +P  +G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 75.2 bits (185), Expect = 1e-15
 Identities = 33/68 (48%), Positives = 46/68 (67%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           + L+GNSI G IP  +GS++ L  L LS N  +G IP  +G LT L  L+LNGN++SG++
Sbjct: 447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Query: 62  PEEIGGLL 69
           P  +GG L
Sbjct: 507 PAALGGRL 514

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 71.8 bits (176), Expect = 2e-14
 Identities = 36/89 (40%), Positives = 53/89 (59%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           LGL    + G IP +I  L  L  ++LS N + G IP  +G++T L  L L+ N+ +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIPNQIG 90
           PE +G L +L  L+L+ N LSG +P  +G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 51.5 bits (123), Expect = 1e-07
 Identities = 60/165 (36%), Positives = 91/165 (55%), Gaps = 8/165 (4%)

Query: 16  EIGSLSQLVELHLSSNQLSGEIPAHIGNLT-ELSTLSLNGNNISGQIPEEIGGLLNLDSL 74
           E+  L+ L  L L +N ++ +IP  IG L   L  L L+ N I   +P  +  L NL +L
Sbjct: 111 ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNL 168

Query: 75  DLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEI 134
           DLS N LS  +P  +  L +L  L+LS  N I  +P +I  L  L++L DLS NS+  E+
Sbjct: 169 DLSFNDLSD-LPKLLSNLSNLNNLDLS-GNKISDLPPEIELLSALEEL-DLSNNSII-EL 224

Query: 135 PAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 179
            + L  L  L  L LS+N L  ++P S+ ++ +L  ++LS N + 
Sbjct: 225 LSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS 268

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 55/186 (29%), Positives = 81/186 (43%), Gaps = 24/186 (12%)

Query: 18  GSLSQLVELHLSSNQLSGEIPAHIGNLTELSTL---SLNGNNISGQIPEEIGGLL----- 69
                L EL LS N L  +    + +L   S+L    LN N +  +    +   L     
Sbjct: 78  TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPP 137

Query: 70  NLDSLDLSMNRLSG----PIPNQIGELRDLRILNLSQNNLIGT-IPFQIGNLVGLQDLQ- 123
            L+ L L  NRL G     +   +   RDL+ LNL+ N +    I      L    +L+ 
Sbjct: 138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEV 197

Query: 124 -DLSYNSLTGEIPAQLG----KLTRLQSLNLSHNNLSGEIPASLSSML-----SLVAVNL 173
            DL+ N LT E  + L      L  L+ LNL  NNL+    A+L+S L     SL+ ++L
Sbjct: 198 LDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSL 257

Query: 174 SYNNLE 179
           S N++ 
Sbjct: 258 SCNDIT 263

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.2 bits (95), Expect = 4e-05
 Identities = 23/55 (41%), Positives = 31/55 (56%)

Query: 124 DLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 178
           DLS N LT         L  L+ L+LS NNL+   P + S + SL +++LS NNL
Sbjct: 6   DLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.8 bits (94), Expect = 5e-05
 Identities = 25/60 (41%), Positives = 32/60 (53%)

Query: 22 QLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL 81
           L  L LS+N+L+         L  L  L L+GNN++   PE   GL +L SLDLS N L
Sbjct: 1  NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 21/57 (36%), Positives = 38/57 (66%), Gaps = 1/57 (1%)

Query: 142 TRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTN 198
           +R+ S++LS  N+SG+I +++  +  +  +NLS N L GP+PD  +F++S S  + N
Sbjct: 69  SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPD-DIFTTSSSLRYLN 124

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 24/59 (40%), Positives = 30/59 (50%)

Query: 47  LSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNL 105
           L +L L+ N ++        GL NL  LDLS N L+   P     L  LR L+LS NNL
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	237
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.93
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.92
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.86
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.85
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.81
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.78
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.78
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.75
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.74
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.72
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.68
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.64
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.61
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.6
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.59
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.59
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.57
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.57
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.55
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.47
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.47
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.44
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.43
PLN03150	623	hypothetical protein; Provisional	99.42
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.4
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.37
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.34
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.32
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.32
PLN03150	623	hypothetical protein; Provisional	99.23
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.18
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.18
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.07
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.06
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.04
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.02
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.02
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.95
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.88
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.84
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.76
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.59
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.54
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.51
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.45
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.4
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.37
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.36
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.35
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.3
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.3
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.29
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.26
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.21
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.14
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.09
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.02
PRK15386	426	type III secretion protein GogB; Provisional	97.95
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.86
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.74
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.61
PRK15386	426	type III secretion protein GogB; Provisional	97.49
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.48
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.43
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.25
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.69
KOG4308	478	consensus LRR-containing protein [Function unknown	96.04
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.38
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.42
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.96
KOG1947	482	consensus Leucine rich repeat proteins, some prote	92.24
KOG4308	478	consensus LRR-containing protein [Function unknown	91.69
KOG1947	482	consensus Leucine rich repeat proteins, some prote	91.66
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.3
smart00370	26	LRR Leucine-rich repeats, outliers.	91.3
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.1
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.79
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	88.4
KOG3864	221	consensus Uncharacterized conserved protein [Funct	88.26
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	83.53
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	82.39

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.93  E-value=1.1e-25  Score=207.74  Aligned_cols=209  Identities=42%  Similarity=0.673  Sum_probs=149.9

Q ss_pred             EecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCc
Q 038699            3 GLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLS   82 (237)
Q Consensus         3 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~   82 (237)
                      ++++|++++..|..|..++.|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+ ..++|+.|++++|.+.
T Consensus       410 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~  488 (968)
T PLN00113        410 RLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFS  488 (968)
T ss_pred             ECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccC
Confidence            344444444444444444444444444444444444444444555555555555544444433 3456777777777777


Q ss_pred             CcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccc
Q 038699           83 GPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASL  162 (237)
Q Consensus        83 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  162 (237)
                      +..|..+..+++|+.|++++|.+.+..|..+..+++|+.| ++++|.+++..|..+..+++|+.|++++|.+++..|..+
T Consensus       489 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L-~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l  567 (968)
T PLN00113        489 GAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSL-DLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNL  567 (968)
T ss_pred             CccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEE-ECCCCcccccCChhHhCcccCCEEECCCCcccccCChhH
Confidence            6777777888888888888888888888888888899999 999999888888888889999999999999988888888


Q ss_pred             cCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCCcccccCC--CCCCCC
Q 038699          163 SSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCGKVQ--GLRPCN  213 (237)
Q Consensus       163 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~l~~~~~--~~~~C~  213 (237)
                      ..+++|++|++++|++.+.+|....+..+....+.+|+.+||..+  ....|.
T Consensus       568 ~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~~c~  620 (968)
T PLN00113        568 GNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCK  620 (968)
T ss_pred             hcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCccccCCCCCc
Confidence            888999999999999998898887888888888889999998653  234564

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.92  E-value=1.4e-24  Score=200.57  Aligned_cols=197  Identities=43%  Similarity=0.625  Sum_probs=124.2

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL   81 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i   81 (237)
                      |+|++|.+++..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+
T Consensus       145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  224 (968)
T PLN00113        145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL  224 (968)
T ss_pred             EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence            56666666666666666666777777776666666666666666666666666666666666666666666666666666


Q ss_pred             cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCcc
Q 038699           82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPAS  161 (237)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  161 (237)
                      .+.+|..+..+++|++|++++|.+.+..|..+..+++|+.| ++++|.+.+..|..+..+++|+.|++++|.+.+..|..
T Consensus       225 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L-~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~  303 (968)
T PLN00113        225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYL-FLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL  303 (968)
T ss_pred             CCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEE-ECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChh
Confidence            66666666666666666666666665666666666666666 66666665555555666666666666666665555555


Q ss_pred             ccCCCCCCEEEcCCCcCcCCCCCC-CccCCCccchhccC
Q 038699          162 LSSMLSLVAVNLSYNNLEGPLPDG-SVFSSSQSSAFTNN  199 (237)
Q Consensus       162 ~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~l~~~~l~~n  199 (237)
                      +..+++|++|++++|.+.+.+|.. ..+++++.+++.+|
T Consensus       304 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n  342 (968)
T PLN00113        304 VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSN  342 (968)
T ss_pred             HcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCC
Confidence            556666666666666665544432 33455555555554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.86  E-value=3.5e-23  Score=172.01  Aligned_cols=204  Identities=26%  Similarity=0.277  Sum_probs=129.2

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL   81 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i   81 (237)
                      |||+.|.|+.+.-+.|..-.++++|+|+.|+|+....+.|..+.+|-.|.|++|.++...+..|..++.|+.|++..|.|
T Consensus       154 lDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i  233 (873)
T KOG4194|consen  154 LDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI  233 (873)
T ss_pred             hhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccce
Confidence            56666666655556666666666666666666666666666666666666666666655555555566666666665554


Q ss_pred             c------------------------CcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChh
Q 038699           82 S------------------------GPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQ  137 (237)
Q Consensus        82 ~------------------------~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~  137 (237)
                      .                        ..-...|..+.++++|++..|++...-..++.++..|+.| +++.|.|.++.++.
T Consensus       234 rive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L-~lS~NaI~rih~d~  312 (873)
T KOG4194|consen  234 RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQL-DLSYNAIQRIHIDS  312 (873)
T ss_pred             eeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhh-ccchhhhheeecch
Confidence            3                        2222344555666677777777765556677777777777 77888777777777


Q ss_pred             hcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCC-CccCCCccchhccCCcccccCC
Q 038699          138 LGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDG-SVFSSSQSSAFTNNKDLCGKVQ  207 (237)
Q Consensus       138 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~l~~~~l~~n~~l~~~~~  207 (237)
                      +..+++|+.|+|++|.|+...+..|..+..|++|.|++|.+...-... ..+.++..+++..| .+.+.+.
T Consensus       313 WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N-~ls~~IE  382 (873)
T KOG4194|consen  313 WSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSN-ELSWCIE  382 (873)
T ss_pred             hhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCC-eEEEEEe
Confidence            777777888888888777666666666666666666666665222111 23455556666555 3444443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.85  E-value=2.1e-22  Score=167.48  Aligned_cols=197  Identities=25%  Similarity=0.270  Sum_probs=163.3

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL   81 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i   81 (237)
                      |+|.+|.|+.+-.+.++.++.|+.|+|+.|.|....-..|..-.++++|+|++|.|+..-.+.|..+.+|..|.++.|.+
T Consensus       130 L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNri  209 (873)
T KOG4194|consen  130 LDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRI  209 (873)
T ss_pred             EeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcc
Confidence            89999999999999999999999999999999966667788878999999999999988889999999999999999999


Q ss_pred             cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCcc
Q 038699           82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPAS  161 (237)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  161 (237)
                      +...+..|..+++|+.|++.+|.+.-..--.|.++++|+.| .+..|.+.....++|..+.++++|+|+.|+++..-..+
T Consensus       210 ttLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nl-klqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~  288 (873)
T KOG4194|consen  210 TTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNL-KLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGW  288 (873)
T ss_pred             cccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhh-hhhhcCcccccCcceeeecccceeecccchhhhhhccc
Confidence            96666789899999999999999874435578888888888 88888887777777777888888888888777666677


Q ss_pred             ccCCCCCCEEEcCCCcCcCCCCC-CCccCCCccchhccC
Q 038699          162 LSSMLSLVAVNLSYNNLEGPLPD-GSVFSSSQSSAFTNN  199 (237)
Q Consensus       162 ~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~l~~~~l~~n  199 (237)
                      +.+++.|+.|++++|.|...-+. +..-+.++++++.+|
T Consensus       289 lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N  327 (873)
T KOG4194|consen  289 LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN  327 (873)
T ss_pred             ccccchhhhhccchhhhheeecchhhhcccceeEecccc
Confidence            77777777777777777643333 334455777777666

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.81  E-value=3.7e-22  Score=142.75  Aligned_cols=181  Identities=30%  Similarity=0.471  Sum_probs=160.8

Q ss_pred             cCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCC
Q 038699           17 IGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLR   96 (237)
Q Consensus        17 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~   96 (237)
                      +..+.+++.|.|++|+++ .+|..++.+.+|+.|++.+|+++ .+|..+..+++|+.|++..|.+. ..|..|+.++.|+
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le  105 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE  105 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence            456788999999999999 77778999999999999999999 88999999999999999999998 8899999999999


Q ss_pred             EEEccCCcccc-cCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCC
Q 038699           97 ILNLSQNNLIG-TIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSY  175 (237)
Q Consensus        97 ~L~l~~n~~~~-~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~  175 (237)
                      .|++.+|.+.. .+|..|..+..|+.| ++++|.+. ..|...+.+++|+.|.+..|.+- .+|..++.+..|++|++++
T Consensus       106 vldltynnl~e~~lpgnff~m~tlral-yl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg  182 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRAL-YLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG  182 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHH-HhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence            99999999863 578889999999999 99999998 88888999999999999999988 7899999999999999999


Q ss_pred             CcCcCCCCCCCcc---CCCccchhccCCccc
Q 038699          176 NNLEGPLPDGSVF---SSSQSSAFTNNKDLC  203 (237)
Q Consensus       176 n~l~~~~~~~~~~---~~l~~~~l~~n~~l~  203 (237)
                      |+++-.+|+...+   .+-..+.+..|||..
T Consensus       183 nrl~vlppel~~l~l~~~k~v~r~E~NPwv~  213 (264)
T KOG0617|consen  183 NRLTVLPPELANLDLVGNKQVMRMEENPWVN  213 (264)
T ss_pred             ceeeecChhhhhhhhhhhHHHHhhhhCCCCC
Confidence            9999777776433   334456677787765

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.78  E-value=1.4e-21  Score=164.15  Aligned_cols=211  Identities=30%  Similarity=0.399  Sum_probs=121.3

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL   81 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i   81 (237)
                      |||++|+++ ..|..+..-+++-.|+|++|+|..+....|.++..|-.|+|++|++. .+|..+..+..|++|.+++|.+
T Consensus       108 lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL  185 (1255)
T KOG0444|consen  108 LDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPL  185 (1255)
T ss_pred             eecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChh
Confidence            555555554 44444555555555555555555333333344555555555555554 4444444444444444444443


Q ss_pred             c-------------------------CcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccCh
Q 038699           82 S-------------------------GPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPA  136 (237)
Q Consensus        82 ~-------------------------~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~  136 (237)
                      .                         ..+|..+..+.+|..++++.|.+. .+|+++..+.+|+.| ++++|+++ ....
T Consensus       186 ~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrL-NLS~N~it-eL~~  262 (1255)
T KOG0444|consen  186 NHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRL-NLSGNKIT-ELNM  262 (1255)
T ss_pred             hHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhhee-ccCcCcee-eeec
Confidence            2                         234555666667777777777776 667777777777777 77777776 3333


Q ss_pred             hhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCc--CCCCCCCccCCCccchhccCCcccccCCCCCCCCC
Q 038699          137 QLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE--GPLPDGSVFSSSQSSAFTNNKDLCGKVQGLRPCNA  214 (237)
Q Consensus       137 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~~~l~~~~l~~n~~l~~~~~~~~~C~~  214 (237)
                      ......+|++|+++.|+++ .+|+++..++.|+.|.+.+|+++  |.+.....+..+..+...+| .+-=.|.++..|..
T Consensus       263 ~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LElVPEglcRC~k  340 (1255)
T KOG0444|consen  263 TEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVK  340 (1255)
T ss_pred             cHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-ccccCchhhhhhHH
Confidence            3445567777777777777 67777777777777777777765  33333355666666666555 23323334445554


Q ss_pred             CccCC
Q 038699          215 LSTDK  219 (237)
Q Consensus       215 ~~~~~  219 (237)
                      +....
T Consensus       341 L~kL~  345 (1255)
T KOG0444|consen  341 LQKLK  345 (1255)
T ss_pred             HHHhc
Confidence            43333

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.78  E-value=5e-21  Score=152.54  Aligned_cols=202  Identities=27%  Similarity=0.325  Sum_probs=157.0

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccC-CcccccCcccccC-------------
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNG-NNISGQIPEEIGG-------------   67 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~-------------   67 (237)
                      ++|..|+|+.+++.+|..+++|+.|+|+.|.|+.+.|++|.+++.+..|.+.+ |+|++...+.|++             
T Consensus        72 irLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~  151 (498)
T KOG4237|consen   72 IRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANH  151 (498)
T ss_pred             EEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhh
Confidence            67889999999999999999999999999999988999999999988887766 8888544444444             


Q ss_pred             -----------CCCCCEEEccCCcCcCcccc-cccCCCCCCEEEccCCccc-----------------------------
Q 038699           68 -----------LLNLDSLDLSMNRLSGPIPN-QIGELRDLRILNLSQNNLI-----------------------------  106 (237)
Q Consensus        68 -----------l~~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~l~~n~~~-----------------------------  106 (237)
                                 +++|..|.+.+|.+. .+++ .+..+..++++++..|.+.                             
T Consensus       152 i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~r  230 (498)
T KOG4237|consen  152 INCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYR  230 (498)
T ss_pred             hcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHH
Confidence                       445555555555554 2232 4555566666665555310                             


Q ss_pred             --------------------------------ccCC-ccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCc
Q 038699          107 --------------------------------GTIP-FQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNN  153 (237)
Q Consensus       107 --------------------------------~~~~-~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~  153 (237)
                                                      ...| ..|..+++|+.+ ++++|+++++.+.+|.+..++++|.|..|+
T Consensus       231 l~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~l-nlsnN~i~~i~~~aFe~~a~l~eL~L~~N~  309 (498)
T KOG4237|consen  231 LYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKL-NLSNNKITRIEDGAFEGAAELQELYLTRNK  309 (498)
T ss_pred             HHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEe-ccCCCccchhhhhhhcchhhhhhhhcCcch
Confidence                                            0011 246677899999 999999999999999999999999999999


Q ss_pred             CcCccCccccCCCCCCEEEcCCCcCcCCCCCC-CccCCCccchhccCCccccc
Q 038699          154 LSGEIPASLSSMLSLVAVNLSYNNLEGPLPDG-SVFSSSQSSAFTNNKDLCGK  205 (237)
Q Consensus       154 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~l~~~~l~~n~~l~~~  205 (237)
                      +.......|.++..|+.|+|.+|+|+..-|.. .....+.++.+.+||+.|..
T Consensus       310 l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC  362 (498)
T KOG4237|consen  310 LEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNC  362 (498)
T ss_pred             HHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCcc
Confidence            98666778999999999999999999766654 34566888999999999943

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.75  E-value=4.4e-20  Score=155.25  Aligned_cols=193  Identities=35%  Similarity=0.386  Sum_probs=154.0

Q ss_pred             EEecCCcCC-CCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699            2 LGLAGNSIG-GKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR   80 (237)
Q Consensus         2 L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   80 (237)
                      +++++|++. .-+|+.+..+..|+.|+|++|++. ..|..+....++-.|+|++|+|..+....|.++.-|-.||+++|.
T Consensus        83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr  161 (1255)
T KOG0444|consen   83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR  161 (1255)
T ss_pred             HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence            356777776 446677788999999999999999 889889999999999999999995555567789999999999999


Q ss_pred             CcCcccccccCCCCCCEEEccCCccc-------------------------ccCCccccCccCccccccCcCcccccccC
Q 038699           81 LSGPIPNQIGELRDLRILNLSQNNLI-------------------------GTIPFQIGNLVGLQDLQDLSYNSLTGEIP  135 (237)
Q Consensus        81 i~~~~~~~~~~l~~L~~L~l~~n~~~-------------------------~~~~~~~~~l~~L~~L~~l~~n~~~~~~~  135 (237)
                      +. .+|..+..+..|++|.+++|.+.                         ..+|..+..+.+|..+ +++.|.+. ..|
T Consensus       162 Le-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dv-DlS~N~Lp-~vP  238 (1255)
T KOG0444|consen  162 LE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDV-DLSENNLP-IVP  238 (1255)
T ss_pred             hh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhc-cccccCCC-cch
Confidence            98 66666788888888888888542                         1345666667777777 88888887 778


Q ss_pred             hhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccC
Q 038699          136 AQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNN  199 (237)
Q Consensus       136 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n  199 (237)
                      ..+..+++|+.|+|++|.|+ .+.-....+.+|++|+++.|+++..+.....++.+..+...+|
T Consensus       239 ecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~N  301 (1255)
T KOG0444|consen  239 ECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNN  301 (1255)
T ss_pred             HHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccC
Confidence            88888888888888888888 5555666778888888888888855556677788887776665

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.74  E-value=2.2e-20  Score=149.33  Aligned_cols=215  Identities=27%  Similarity=0.382  Sum_probs=150.0

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL   81 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i   81 (237)
                      |+.++|++. ..++.++.+-.+..++..+|++. ..|.++..+..+..+++.+|.++...|+ .-.++.|++||...|.+
T Consensus       119 l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~-~i~m~~L~~ld~~~N~L  195 (565)
T KOG0472|consen  119 LDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPEN-HIAMKRLKHLDCNSNLL  195 (565)
T ss_pred             hhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHH-HHHHHHHHhcccchhhh
Confidence            344555554 44444555555555555555555 4455555555666666666666633333 33467777777777777


Q ss_pred             cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCcc
Q 038699           82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPAS  161 (237)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  161 (237)
                      + .+|+.++.+.+|..|++.+|.+. .+| .|+++..|.++ .++.|.+........+.++++..||+.+|+++ ..|+.
T Consensus       196 ~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~El-h~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde  270 (565)
T KOG0472|consen  196 E-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKEL-HVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDE  270 (565)
T ss_pred             h-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHH-HhcccHHHhhHHHHhcccccceeeeccccccc-cCchH
Confidence            6 66777778888888888888876 556 67788888888 88888887444555668999999999999999 88999


Q ss_pred             ccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCCccc--------ccC------CCCCCCCCCccCCCCCccc
Q 038699          162 LSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLC--------GKV------QGLRPCNALSTDKGGGHKD  225 (237)
Q Consensus       162 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~l~--------~~~------~~~~~C~~~~~~~~~~~~~  225 (237)
                      +..+.+|..||+++|.+++..+....+ .++.+.+.|||--.        |+.      .+-..|...+..+++....
T Consensus       271 ~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~  347 (565)
T KOG0472|consen  271 ICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETA  347 (565)
T ss_pred             HHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccccccc
Confidence            999999999999999999888888777 88999999997433        211      1223466666666665443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.72  E-value=4.4e-20  Score=132.18  Aligned_cols=175  Identities=31%  Similarity=0.541  Sum_probs=151.3

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL   81 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i   81 (237)
                      |.|++|.++ ..|+.++.+.+|+.|++.+|+++ ..|..++.+++|+.|++..|++. ..|..|+.+|.|+.||+.+|++
T Consensus        38 LtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl  114 (264)
T KOG0617|consen   38 LTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNL  114 (264)
T ss_pred             hhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcccccc
Confidence            678999998 66778899999999999999999 78889999999999999999998 8999999999999999999988


Q ss_pred             c-CcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCc
Q 038699           82 S-GPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPA  160 (237)
Q Consensus        82 ~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  160 (237)
                      . ..+|..|..+..|+.|.++.|.+. .+|..++.+++|+.| .+++|.+- ..|..++.+..|++|++.+|.++ .+|.
T Consensus       115 ~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil-~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlpp  190 (264)
T KOG0617|consen  115 NENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQIL-SLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPP  190 (264)
T ss_pred             ccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEE-eeccCchh-hCcHHHHHHHHHHHHhcccceee-ecCh
Confidence            5 467888889999999999999997 888899999999999 99999987 78888999999999999999999 6776


Q ss_pred             cccCC---CCCCEEEcCCCcCcCCCC
Q 038699          161 SLSSM---LSLVAVNLSYNNLEGPLP  183 (237)
Q Consensus       161 ~~~~~---~~L~~L~l~~n~l~~~~~  183 (237)
                      .++.+   .+-+.+.+++|+....+.
T Consensus       191 el~~l~l~~~k~v~r~E~NPwv~pIa  216 (264)
T KOG0617|consen  191 ELANLDLVGNKQVMRMEENPWVNPIA  216 (264)
T ss_pred             hhhhhhhhhhHHHHhhhhCCCCChHH
Confidence            66553   233345566666554443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.68  E-value=1.8e-19  Score=144.20  Aligned_cols=198  Identities=31%  Similarity=0.487  Sum_probs=161.4

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL   81 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i   81 (237)
                      ++.++|.+. .+|+.+..+.+++.++.+.|++. ..++.+..+..++.++..+|+++ ..|.++..+.+|..+++.+|.+
T Consensus        96 l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l  172 (565)
T KOG0472|consen   96 LNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKL  172 (565)
T ss_pred             hhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccch
Confidence            345566665 56666777778888888888887 56666777778888888888887 6777777888888888888888


Q ss_pred             cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCcc
Q 038699           82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPAS  161 (237)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  161 (237)
                      . ..|...-+++.|++++...|.+. .+|..++.+.+|.-| ++..|++. ..| .|.++..|+++++..|+|. ..|..
T Consensus       173 ~-~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~L-yL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae  246 (565)
T KOG0472|consen  173 K-ALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELL-YLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAE  246 (565)
T ss_pred             h-hCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHH-Hhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHH
Confidence            8 44444445999999999999887 788899999999999 99999998 777 6899999999999999998 55654


Q ss_pred             c-cCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCCcccccCCCC
Q 038699          162 L-SSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCGKVQGL  209 (237)
Q Consensus       162 ~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~l~~~~~~~  209 (237)
                      . ..++++..||+..|+++..+++.+.+.++..+++++| .+.+.++.+
T Consensus       247 ~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN-~is~Lp~sL  294 (565)
T KOG0472|consen  247 HLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNN-DISSLPYSL  294 (565)
T ss_pred             HhcccccceeeeccccccccCchHHHHhhhhhhhcccCC-ccccCCccc
Confidence            4 4899999999999999977777788888999999887 677777654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.64  E-value=9.8e-18  Score=146.07  Aligned_cols=208  Identities=26%  Similarity=0.371  Sum_probs=153.1

Q ss_pred             CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCC----------------------ccCccccCCCCCCEEeccCCccc
Q 038699            1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSG----------------------EIPAHIGNLTELSTLSLNGNNIS   58 (237)
Q Consensus         1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~----------------------~~~~~~~~l~~L~~L~l~~n~l~   58 (237)
                      ++|+++|+++... +++..+.+|+.+...+|.++.                      .+|....++..|++|+|..|.+.
T Consensus       245 ~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~  323 (1081)
T KOG0618|consen  245 YLDISHNNLSNLP-EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP  323 (1081)
T ss_pred             eeecchhhhhcch-HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcccc
Confidence            3678888887444 888888888888888877652                      23333344567777777777666


Q ss_pred             ccCcccc--------------------------cCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCcc
Q 038699           59 GQIPEEI--------------------------GGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQ  112 (237)
Q Consensus        59 ~~~~~~~--------------------------~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  112 (237)
                       .+|+.+                          ..++.|+.|++.+|.+++..-..+.++.+|+.|++++|++.......
T Consensus       324 -~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~  402 (1081)
T KOG0618|consen  324 -SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASK  402 (1081)
T ss_pred             -ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHH
Confidence             333211                          12335666777777777665566778899999999999998666667


Q ss_pred             ccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCCCcc-CCC
Q 038699          113 IGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVF-SSS  191 (237)
Q Consensus       113 ~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-~~l  191 (237)
                      +.++..|++| ++++|+++ ..|.....++.|++|..-+|++. .+| .+..++.|+.+|++.|.++...-..... +++
T Consensus       403 ~~kle~LeeL-~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~L  478 (1081)
T KOG0618|consen  403 LRKLEELEEL-NLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNL  478 (1081)
T ss_pred             HhchHHhHHH-hcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCccc
Confidence            8899999999 99999998 66788889999999999999998 777 7889999999999999998544333333 889


Q ss_pred             ccchhccCCcccccCCCCCCCCC
Q 038699          192 QSSAFTNNKDLCGKVQGLRPCNA  214 (237)
Q Consensus       192 ~~~~l~~n~~l~~~~~~~~~C~~  214 (237)
                      +.++++||.++--.-..++.|+.
T Consensus       479 kyLdlSGN~~l~~d~~~l~~l~~  501 (1081)
T KOG0618|consen  479 KYLDLSGNTRLVFDHKTLKVLKS  501 (1081)
T ss_pred             ceeeccCCcccccchhhhHHhhh
Confidence            99999999875533333333433

>PLN03210 Resistant to P

Probab=99.61  E-value=1.8e-14  Score=134.97  Aligned_cols=193  Identities=26%  Similarity=0.299  Sum_probs=101.5

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL   81 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i   81 (237)
                      |+|+++.+. .++..+..+++|+.|+|+++...+.+|. +..+++|+.|++++|.....+|..+..+++|+.|++++|..
T Consensus       616 L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~  693 (1153)
T PLN03210        616 LQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCEN  693 (1153)
T ss_pred             EECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCC
Confidence            444445444 2334444555555555555433323332 44555555555555543335555555555666666655443


Q ss_pred             cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChh------------------------
Q 038699           82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQ------------------------  137 (237)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~------------------------  137 (237)
                      ...+|..+ ++++|+.|++++|......|..   ..+|+.| ++++|.+. ..|..                        
T Consensus       694 L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L-~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~  767 (1153)
T PLN03210        694 LEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWL-DLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQ  767 (1153)
T ss_pred             cCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCee-ecCCCccc-cccccccccccccccccccchhhcccccc
Confidence            33444333 4555666666655433222221   2334444 55555443 12211                        


Q ss_pred             ------hcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCCcc
Q 038699          138 ------LGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDL  202 (237)
Q Consensus       138 ------~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~l  202 (237)
                            +..+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|....++.+..+++.+|..+
T Consensus       768 ~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L  838 (1153)
T PLN03210        768 PLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRL  838 (1153)
T ss_pred             ccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcc
Confidence                  11134667777777765556777777788888888887755445666555666666666665443

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.60  E-value=1.9e-14  Score=134.91  Aligned_cols=78  Identities=27%  Similarity=0.325  Sum_probs=52.2

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL   81 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i   81 (237)
                      |+|+++...+.+| .+..+++|+.|++.+|.....+|..+..+++|+.|++++|...+.+|..+ .+++|+.|++++|..
T Consensus       639 L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~  716 (1153)
T PLN03210        639 IDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSR  716 (1153)
T ss_pred             EECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCC
Confidence            6777765444555 36777888888888876665777777788888888888764333555544 566666666666543

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.59  E-value=3e-17  Score=131.18  Aligned_cols=178  Identities=28%  Similarity=0.349  Sum_probs=142.5

Q ss_pred             CEEecCCcCCCCCCcccCCCCCCcEEEccC-CcCCCccCccccCC------------------------CCCCEEeccCC
Q 038699            1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSS-NQLSGEIPAHIGNL------------------------TELSTLSLNGN   55 (237)
Q Consensus         1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l------------------------~~L~~L~l~~n   55 (237)
                      .|||+.|+|+.+.|.+|.++..+..|.+.+ |+|++...+.|.++                        +++..|.+..|
T Consensus        95 rLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn  174 (498)
T KOG4237|consen   95 RLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN  174 (498)
T ss_pred             eecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch
Confidence            379999999999999999999988887776 88886555555554                        45555555555


Q ss_pred             cccccCcccccCCCCCCEEEccCCcCcC----------------------------------------------------
Q 038699           56 NISGQIPEEIGGLLNLDSLDLSMNRLSG----------------------------------------------------   83 (237)
Q Consensus        56 ~l~~~~~~~~~~l~~L~~L~l~~n~i~~----------------------------------------------------   83 (237)
                      .+....-..|..+.+++.+++..|.+..                                                    
T Consensus       175 ~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~  254 (498)
T KOG4237|consen  175 KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSR  254 (498)
T ss_pred             hhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHh
Confidence            5552222366777777777777665110                                                    


Q ss_pred             ---------ccc-ccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCc
Q 038699           84 ---------PIP-NQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNN  153 (237)
Q Consensus        84 ---------~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~  153 (237)
                               ..| ..|..+++|+.|++++|.++...+.+|.....+++| .+..|++..+....|.++..|+.|+|.+|+
T Consensus       255 ~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL-~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~  333 (498)
T KOG4237|consen  255 LSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL-YLTRNKLEFVSSGMFQGLSGLKTLSLYDNQ  333 (498)
T ss_pred             hccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh-hcCcchHHHHHHHhhhccccceeeeecCCe
Confidence                     011 235678999999999999999889999999999999 999999998888899999999999999999


Q ss_pred             CcCccCccccCCCCCCEEEcCCCcCc
Q 038699          154 LSGEIPASLSSMLSLVAVNLSYNNLE  179 (237)
Q Consensus       154 l~~~~~~~~~~~~~L~~L~l~~n~l~  179 (237)
                      |+-..|.+|..+.+|.+|++-.|++.
T Consensus       334 it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  334 ITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             eEEEecccccccceeeeeehccCccc
Confidence            99888999999999999999999885

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.59  E-value=1.2e-14  Score=129.27  Aligned_cols=175  Identities=30%  Similarity=0.510  Sum_probs=91.1

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL   81 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i   81 (237)
                      |+|++|.++. +|..+.  .+|+.|++++|.++ .+|..+.  .+|+.|++++|.+. .+|..+.  .+|+.|++++|.+
T Consensus       204 L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L  274 (754)
T PRK15370        204 LILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKI  274 (754)
T ss_pred             EEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCcc
Confidence            5666666663 333332  36777777777666 3444332  35677777777766 4555443  3677777777777


Q ss_pred             cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCccccc--------------------ccChhhcCC
Q 038699           82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTG--------------------EIPAQLGKL  141 (237)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~--------------------~~~~~~~~~  141 (237)
                      . .+|..+.  ++|+.|++++|.++. +|..+.  ++|+.| ++++|.++.                    ..|..+  .
T Consensus       275 ~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L-~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l--~  345 (754)
T PRK15370        275 S-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHL-NVQSNSLTALPETLPPGLKTLEAGENALTSLPASL--P  345 (754)
T ss_pred             C-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHH-HhcCCccccCCccccccceeccccCCccccCChhh--c
Confidence            6 4554332  467777777777763 332221  234444 444444442                    122222  1


Q ss_pred             CCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccC
Q 038699          142 TRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNN  199 (237)
Q Consensus       142 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n  199 (237)
                      ++|+.|++++|.++ .+|..+  .++|++|++++|+++. +|.. ....++.+++.+|
T Consensus       346 ~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~-LP~~-l~~sL~~LdLs~N  398 (754)
T PRK15370        346 PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTN-LPEN-LPAALQIMQASRN  398 (754)
T ss_pred             CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCC-CCHh-HHHHHHHHhhccC
Confidence            35555555555554 333332  2455556666655553 2221 1223455555554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.57  E-value=1.4e-16  Score=129.88  Aligned_cols=16  Identities=50%  Similarity=0.717  Sum_probs=7.4

Q ss_pred             CCCCCCeEeCcCCcCc
Q 038699          140 KLTRLQSLNLSHNNLS  155 (237)
Q Consensus       140 ~~~~L~~L~l~~n~l~  155 (237)
                      .+++|+.|++++|.++
T Consensus       219 ~~~~L~~L~ls~n~l~  234 (319)
T cd00116         219 SLKSLEVLNLGDNNLT  234 (319)
T ss_pred             ccCCCCEEecCCCcCc
Confidence            3444444444444444

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.57  E-value=2.3e-16  Score=128.53  Aligned_cols=198  Identities=24%  Similarity=0.333  Sum_probs=137.2

Q ss_pred             EEecCCcCCCCCCcccCCCCC---CcEEEccCCcCCC----ccCccccCC-CCCCEEeccCCcccc----cCcccccCCC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQ---LVELHLSSNQLSG----EIPAHIGNL-TELSTLSLNGNNISG----QIPEEIGGLL   69 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~---L~~L~L~~n~i~~----~~~~~~~~l-~~L~~L~l~~n~l~~----~~~~~~~~l~   69 (237)
                      |++++|.+....+..+..+.+   |++|++++|.+.+    .+...+..+ ++|+.|++++|.+++    .++..+..++
T Consensus        86 L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~  165 (319)
T cd00116          86 LDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANR  165 (319)
T ss_pred             EEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCC
Confidence            678888887666655554444   8888888888773    223344556 788999999888773    2334556677


Q ss_pred             CCCEEEccCCcCcCc----ccccccCCCCCCEEEccCCccccc----CCccccCccCccccccCcCcccccccChhhc--
Q 038699           70 NLDSLDLSMNRLSGP----IPNQIGELRDLRILNLSQNNLIGT----IPFQIGNLVGLQDLQDLSYNSLTGEIPAQLG--  139 (237)
Q Consensus        70 ~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~--  139 (237)
                      +|++|++++|.+.+.    ++..+..+++|++|++++|.+.+.    ....+..+++|+.| ++++|.+.+.....+.  
T Consensus       166 ~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L-~ls~n~l~~~~~~~l~~~  244 (319)
T cd00116         166 DLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVL-NLGDNNLTDAGAAALASA  244 (319)
T ss_pred             CcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEE-ecCCCcCchHHHHHHHHH
Confidence            899999999888732    233455667999999999988633    33456678899999 9999988753332222  


Q ss_pred             ---CCCCCCeEeCcCCcCcC----ccCccccCCCCCCEEEcCCCcCcCC----CCC-CCcc-CCCccchhccCC
Q 038699          140 ---KLTRLQSLNLSHNNLSG----EIPASLSSMLSLVAVNLSYNNLEGP----LPD-GSVF-SSSQSSAFTNNK  200 (237)
Q Consensus       140 ---~~~~L~~L~l~~n~l~~----~~~~~~~~~~~L~~L~l~~n~l~~~----~~~-~~~~-~~l~~~~l~~n~  200 (237)
                         ..+.|++|++++|.+++    .+...+..+++|+++++++|.+...    +.. ...+ +.+..+++..|+
T Consensus       245 ~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         245 LLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             HhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence               24799999999999973    2344566678999999999999843    111 1222 456666666654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.55  E-value=9.2e-15  Score=129.93  Aligned_cols=183  Identities=28%  Similarity=0.398  Sum_probs=120.4

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL   81 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i   81 (237)
                      |++++|.++. +|..+.  ..|+.|++++|.+. .+|..+.  .+|+.|++++|.++ .+|+.+.  ++|+.|++++|.+
T Consensus       225 L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~L  295 (754)
T PRK15370        225 LYANSNQLTS-IPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSI  295 (754)
T ss_pred             EECCCCcccc-CChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcc
Confidence            6777777773 344332  35777777777766 4454432  35677777777666 4454432  3566666666666


Q ss_pred             cCcccccc-------------------cCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCC
Q 038699           82 SGPIPNQI-------------------GELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLT  142 (237)
Q Consensus        82 ~~~~~~~~-------------------~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~  142 (237)
                      +. +|..+                   .-.++|+.|++++|.++. +|..+.  ++|+.| ++++|++. ..|..+  .+
T Consensus       296 t~-LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L-~Ls~N~L~-~LP~~l--p~  367 (754)
T PRK15370        296 RT-LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS-LPASLP--PELQVL-DVSKNQIT-VLPETL--PP  367 (754)
T ss_pred             cc-CcccchhhHHHHHhcCCccccCCccccccceeccccCCcccc-CChhhc--CcccEE-ECCCCCCC-cCChhh--cC
Confidence            52 22211                   112568888888888773 555443  689999 99999998 566554  36


Q ss_pred             CCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCC-----CccCCCccchhccCCccccc
Q 038699          143 RLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDG-----SVFSSSQSSAFTNNKDLCGK  205 (237)
Q Consensus       143 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-----~~~~~l~~~~l~~n~~l~~~  205 (237)
                      +|+.|++++|.++ .+|..+.  ..|+.|++++|++++ +|..     ...+.+..+.+.+|+.-.+.
T Consensus       368 ~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~~Npls~~t  431 (754)
T PRK15370        368 TITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVR-LPESLPHFRGEGPQPTRIIVEYNPFSERT  431 (754)
T ss_pred             CcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCccc-CchhHHHHhhcCCCccEEEeeCCCccHHH
Confidence            8999999999998 5565543  479999999999984 4432     22356778888898754443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.47  E-value=1e-13  Score=122.93  Aligned_cols=161  Identities=27%  Similarity=0.358  Sum_probs=84.0

Q ss_pred             CCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccC----------------C-CCCCEEEccCCcCcCc
Q 038699           22 QLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGG----------------L-LNLDSLDLSMNRLSGP   84 (237)
Q Consensus        22 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------------l-~~L~~L~l~~n~i~~~   84 (237)
                      .|+.|++++|+++ .+|.   ..++|+.|++++|.+++ +|.....                + .+|+.|++++|.+. .
T Consensus       283 ~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls-~  356 (788)
T PRK15387        283 GLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA-S  356 (788)
T ss_pred             hcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCCcccccccccccCccccccccccccceEecCCCccC-C
Confidence            4555566666655 3332   23567777777777763 3321110                0 24555555555554 2


Q ss_pred             ccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccC
Q 038699           85 IPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSS  164 (237)
Q Consensus        85 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  164 (237)
                      +|..   ..+|+.|++++|.+. .+|..   ..+|+.| ++++|.++ ..|..   .++|+.|++++|.++ .+|..   
T Consensus       357 LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~L-dLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---  420 (788)
T PRK15387        357 LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKEL-IVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---  420 (788)
T ss_pred             CCCC---Ccccceehhhccccc-cCccc---ccccceE-EecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---
Confidence            2321   223444455555444 22321   2345666 66666665 23321   245677777777766 34432   


Q ss_pred             CCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCCccccc
Q 038699          165 MLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCGK  205 (237)
Q Consensus       165 ~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~l~~~  205 (237)
                      ..+|+.|++++|+++..+.....++.+..+++.+|+ ++|.
T Consensus       421 ~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~-Ls~~  460 (788)
T PRK15387        421 PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP-LSER  460 (788)
T ss_pred             hhhhhhhhhccCcccccChHHhhccCCCeEECCCCC-CCch
Confidence            235667777777777333334456677778877775 4444

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.47  E-value=5.1e-13  Score=118.62  Aligned_cols=171  Identities=26%  Similarity=0.339  Sum_probs=95.8

Q ss_pred             CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699            1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR   80 (237)
Q Consensus         1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   80 (237)
                      +|++++++++ .+|..+.  ++|+.|++.+|.++ .+|.   .+++|++|++++|.++ .+|..   .++|+.|++++|.
T Consensus       205 ~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~  273 (788)
T PRK15387        205 VLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNP  273 (788)
T ss_pred             EEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCCc
Confidence            3788999998 4565554  47888899888888 4553   3578888888888887 44532   2456666666665


Q ss_pred             CcCccccccc-----------------CCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCC
Q 038699           81 LSGPIPNQIG-----------------ELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTR  143 (237)
Q Consensus        81 i~~~~~~~~~-----------------~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~  143 (237)
                      +. .+|..+.                 .+++|+.|++++|.+.+ +|..   ..+|+.| ++++|.++ .+|.   ...+
T Consensus       274 L~-~Lp~lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L-~Ls~N~L~-~LP~---lp~~  343 (788)
T PRK15387        274 LT-HLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS-LPAL---PSELCKL-WAYNNQLT-SLPT---LPSG  343 (788)
T ss_pred             hh-hhhhchhhcCEEECcCCccccccccccccceeECCCCcccc-CCCC---ccccccc-ccccCccc-cccc---cccc
Confidence            55 2222110                 12445555555555542 2221   1234445 55555554 2222   1246


Q ss_pred             CCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccC
Q 038699          144 LQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNN  199 (237)
Q Consensus       144 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n  199 (237)
                      |+.|++++|.++ .+|..   ..+|+.|++++|+++. +|..  ...+..+++.+|
T Consensus       344 Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~-LP~l--~~~L~~LdLs~N  392 (788)
T PRK15387        344 LQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS-LPAL--PSGLKELIVSGN  392 (788)
T ss_pred             cceEecCCCccC-CCCCC---Ccccceehhhcccccc-Cccc--ccccceEEecCC
Confidence            777777777776 34432   2345555666666552 3332  234455555544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.44  E-value=1.6e-15  Score=126.40  Aligned_cols=173  Identities=32%  Similarity=0.523  Sum_probs=140.2

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL   81 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i   81 (237)
                      .||+.|++. .+|..+..+-.|..+.|+.|.+. .+|.+++.+..|.+++|+.|+++ .+|..+..++ |+.|-+++|++
T Consensus        80 aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl  155 (722)
T KOG0532|consen   80 ADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKL  155 (722)
T ss_pred             hhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCcc
Confidence            577888887 66767777777888888888888 67778888888999999999888 7777776654 78888888888


Q ss_pred             cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCcc
Q 038699           82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPAS  161 (237)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  161 (237)
                      + .+|..++.+..|.+|+.+.|.+. ..|..++.+.+|+.| .++.|.+. ..|..+.. -.|..||++.|++. .+|-.
T Consensus       156 ~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l-~vrRn~l~-~lp~El~~-LpLi~lDfScNkis-~iPv~  229 (722)
T KOG0532|consen  156 T-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDL-NVRRNHLE-DLPEELCS-LPLIRLDFSCNKIS-YLPVD  229 (722)
T ss_pred             c-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHH-HHhhhhhh-hCCHHHhC-CceeeeecccCcee-ecchh
Confidence            8 77888888888999999999887 677788888888888 88888887 56666663 35888999999998 78888


Q ss_pred             ccCCCCCCEEEcCCCcCcCCCCC
Q 038699          162 LSSMLSLVAVNLSYNNLEGPLPD  184 (237)
Q Consensus       162 ~~~~~~L~~L~l~~n~l~~~~~~  184 (237)
                      |..++.|++|.|++|+++.+...
T Consensus       230 fr~m~~Lq~l~LenNPLqSPPAq  252 (722)
T KOG0532|consen  230 FRKMRHLQVLQLENNPLQSPPAQ  252 (722)
T ss_pred             hhhhhhheeeeeccCCCCCChHH
Confidence            99999999999999999844433

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.43  E-value=6.6e-15  Score=128.74  Aligned_cols=169  Identities=33%  Similarity=0.392  Sum_probs=130.1

Q ss_pred             EecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCcccc--------------------------CCCCCCEEeccCCc
Q 038699            3 GLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIG--------------------------NLTELSTLSLNGNN   56 (237)
Q Consensus         3 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--------------------------~l~~L~~L~l~~n~   56 (237)
                      +..+|.+. .+|+....++.|+.|+|..|.+.. .|+.+.                          .++.|+.|++.+|.
T Consensus       293 ~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~  370 (1081)
T KOG0618|consen  293 SAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPS-LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNH  370 (1081)
T ss_pred             Hhhhhhhh-hCCCcccccceeeeeeehhccccc-cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCc
Confidence            44556665 455556667788888888777763 222211                          13467788888888


Q ss_pred             ccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccCh
Q 038699           57 ISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPA  136 (237)
Q Consensus        57 l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~  136 (237)
                      +++.....+.++..|+.|+|++|.+.......+.++..|++|++++|.++ .+|..+..+..|+.| ....|.+. ..| 
T Consensus       371 Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL-~ahsN~l~-~fP-  446 (1081)
T KOG0618|consen  371 LTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTL-RAHSNQLL-SFP-  446 (1081)
T ss_pred             ccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHH-hhcCCcee-ech-
Confidence            88877788889999999999999998444467788999999999999998 777889999999999 88889887 667 


Q ss_pred             hhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCc
Q 038699          137 QLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNN  177 (237)
Q Consensus       137 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~  177 (237)
                      .+..++.|+.+|++.|.++......-...++|++||++||.
T Consensus       447 e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  447 ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            67889999999999999885333333334899999999997

>PLN03150 hypothetical protein; Provisional

Probab=99.42  E-value=4.8e-13  Score=117.94  Aligned_cols=118  Identities=42%  Similarity=0.638  Sum_probs=105.0

Q ss_pred             CCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcC
Q 038699           95 LRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLS  174 (237)
Q Consensus        95 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~  174 (237)
                      ++.|+|++|.+.+..|..+..+++|+.| ++++|.+.+..|..+..+++|+.|++++|.+++..|..+..+++|+.|+++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L-~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSI-NLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEE-ECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            6789999999999999999999999999 999999998999999999999999999999999999999999999999999


Q ss_pred             CCcCcCCCCCCCc--cCCCccchhccCCcccccCCCCCCCCC
Q 038699          175 YNNLEGPLPDGSV--FSSSQSSAFTNNKDLCGKVQGLRPCNA  214 (237)
Q Consensus       175 ~n~l~~~~~~~~~--~~~l~~~~l~~n~~l~~~~~~~~~C~~  214 (237)
                      +|++++.+|....  +..+..+++.+|+.+||.+ .+..|..
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p-~l~~C~~  539 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP-GLRACGP  539 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCC-CCCCCcc
Confidence            9999999987532  2345678899999999864 4577853

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.40  E-value=8e-15  Score=122.33  Aligned_cols=191  Identities=35%  Similarity=0.458  Sum_probs=160.5

Q ss_pred             EEecCCcCCCCCCccc-CCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699            2 LGLAGNSIGGKIPAEI-GSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR   80 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   80 (237)
                      |.|++-++..-.-.++ ..+......+++.|++. .+|..++.+..|+.+.+..|.+. .+|..+..+..|.+|+++.|.
T Consensus        55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nq  132 (722)
T KOG0532|consen   55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQ  132 (722)
T ss_pred             cccccchhhcCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccch
Confidence            3445555543333333 34566677899999999 78888898999999999999998 889999999999999999999


Q ss_pred             CcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCc
Q 038699           81 LSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPA  160 (237)
Q Consensus        81 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  160 (237)
                      +. .+|..+..++ |+.|-+++|+++ .+|..++....|..| +.+.|.+. ..|..+.++.+|+.|.+..|.+. .+|.
T Consensus       133 lS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~l-d~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~  206 (722)
T KOG0532|consen  133 LS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHL-DVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPE  206 (722)
T ss_pred             hh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHh-hhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCH
Confidence            99 7787777666 999999999998 778888989999999 99999998 88888999999999999999998 6777


Q ss_pred             cccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCCc
Q 038699          161 SLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKD  201 (237)
Q Consensus       161 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~  201 (237)
                      .+. .-.|..||+++|+++..+-....+..++++.+.+||-
T Consensus       207 El~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPL  246 (722)
T KOG0532|consen  207 ELC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPL  246 (722)
T ss_pred             HHh-CCceeeeecccCceeecchhhhhhhhheeeeeccCCC
Confidence            776 4578999999999995555667889999999999974

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.37  E-value=6.1e-13  Score=111.71  Aligned_cols=171  Identities=38%  Similarity=0.584  Sum_probs=88.8

Q ss_pred             EEecCCcCCCCCCcccCCCC-CCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699            2 LGLAGNSIGGKIPAEIGSLS-QLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR   80 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   80 (237)
                      |++.+|.++.+.+ ...... +|+.|++++|.+. .++..+..+++|+.|++++|.+. .++.....+++|+.|++++|.
T Consensus       121 L~l~~n~i~~i~~-~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~  197 (394)
T COG4886         121 LDLDNNNITDIPP-LIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNK  197 (394)
T ss_pred             EecCCcccccCcc-ccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCc
Confidence            4455555553322 223332 5555666666555 33334455556666666666555 334333355556666666665


Q ss_pred             CcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCc
Q 038699           81 LSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPA  160 (237)
Q Consensus        81 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  160 (237)
                      +. .+|........|+++.+++|.+. ..+..+..+.++..+ .+..|++. ..+..+..++.++.|++++|.+++... 
T Consensus       198 i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l-~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~-  272 (394)
T COG4886         198 IS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGL-ELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS-  272 (394)
T ss_pred             cc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhccccccc-ccCCceee-eccchhccccccceecccccccccccc-
Confidence            55 33433334444556666655432 333445555555555 55555554 224445555666666666666653222 


Q ss_pred             cccCCCCCCEEEcCCCcCcCC
Q 038699          161 SLSSMLSLVAVNLSYNNLEGP  181 (237)
Q Consensus       161 ~~~~~~~L~~L~l~~n~l~~~  181 (237)
                       +....+++.|++++|.+...
T Consensus       273 -~~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         273 -LGSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             -ccccCccCEEeccCcccccc
Confidence             55566666666666665533

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.34  E-value=1.5e-12  Score=109.42  Aligned_cols=191  Identities=34%  Similarity=0.538  Sum_probs=147.9

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCC-CCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLT-ELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR   80 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   80 (237)
                      +++..+.+..... ....++.++.|++.+|.++ .++.....+. +|+.|+++.|.+. .++..+..+++|+.|+++.|.
T Consensus        98 l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~  174 (394)
T COG4886          98 LDLNLNRLRSNIS-ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND  174 (394)
T ss_pred             eeccccccccCch-hhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence            4455555532222 2344578999999999999 4555555663 8999999999998 666678899999999999999


Q ss_pred             CcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCc
Q 038699           81 LSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPA  160 (237)
Q Consensus        81 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  160 (237)
                      +. .++......+.|+.|++++|.+. .+|........|+++ .++.|.+. ..+..+..+.++..+.+.+|++. ..+.
T Consensus       175 l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l-~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~  249 (394)
T COG4886         175 LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEEL-DLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPE  249 (394)
T ss_pred             hh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhh-hhcCCcce-ecchhhhhcccccccccCCceee-eccc
Confidence            98 55555558899999999999998 555555566678888 99999654 55666778889999999999987 4477


Q ss_pred             cccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCCc
Q 038699          161 SLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKD  201 (237)
Q Consensus       161 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~  201 (237)
                      .+..++++++|++++|+++ .++......++..+++.+|..
T Consensus       250 ~~~~l~~l~~L~~s~n~i~-~i~~~~~~~~l~~L~~s~n~~  289 (394)
T COG4886         250 SIGNLSNLETLDLSNNQIS-SISSLGSLTNLRELDLSGNSL  289 (394)
T ss_pred             hhccccccceecccccccc-ccccccccCccCEEeccCccc
Confidence            7888999999999999999 444467778888888888743

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.32  E-value=1.7e-12  Score=95.69  Aligned_cols=108  Identities=34%  Similarity=0.439  Sum_probs=27.7

Q ss_pred             cCCCCCCcEEEccCCcCCCccCcccc-CCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccc-cCCCC
Q 038699           17 IGSLSQLVELHLSSNQLSGEIPAHIG-NLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQI-GELRD   94 (237)
Q Consensus        17 ~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~-~~l~~   94 (237)
                      +.+..++++|+|.+|.|+.. . .+. .+.+|+.|++++|.++..  +.+..++.|++|++++|.|+. +...+ ..+++
T Consensus        15 ~~n~~~~~~L~L~~n~I~~I-e-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~   89 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTI-E-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPN   89 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred             cccccccccccccccccccc-c-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCc
Confidence            33445667777777777732 2 233 456777777777777632  345666777777777777763 33233 34667


Q ss_pred             CCEEEccCCcccccC-CccccCccCccccccCcCccc
Q 038699           95 LRILNLSQNNLIGTI-PFQIGNLVGLQDLQDLSYNSL  130 (237)
Q Consensus        95 L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~~l~~n~~  130 (237)
                      |++|++++|.+.... -..+..+++|+.| ++.+|.+
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L-~L~~NPv  125 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVL-SLEGNPV  125 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EE-E-TT-GG
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCccee-eccCCcc
Confidence            777777777665221 1233334444444 4444444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.32  E-value=7.5e-13  Score=97.61  Aligned_cols=125  Identities=32%  Similarity=0.406  Sum_probs=41.3

Q ss_pred             cCCCCCCEEeccCCcccccCccccc-CCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCccc-cCccCc
Q 038699           42 GNLTELSTLSLNGNNISGQIPEEIG-GLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQI-GNLVGL  119 (237)
Q Consensus        42 ~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L  119 (237)
                      .+...+++|+|++|.|+. + +.++ .+.+|+.|++++|.|...  +.+..++.|++|++++|.++.. ...+ ..+++|
T Consensus        16 ~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L   90 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNL   90 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT-
T ss_pred             cccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCcC
Confidence            344567788888887773 3 2344 467788888888887733  3466777788888888877743 2223 356777


Q ss_pred             cccccCcCccccccc-ChhhcCCCCCCeEeCcCCcCcCcc---CccccCCCCCCEEE
Q 038699          120 QDLQDLSYNSLTGEI-PAQLGKLTRLQSLNLSHNNLSGEI---PASLSSMLSLVAVN  172 (237)
Q Consensus       120 ~~L~~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~---~~~~~~~~~L~~L~  172 (237)
                      +.| ++++|++.... -..+..+++|+.|++.+|++++..   ...+..+|+|+.||
T Consensus        91 ~~L-~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   91 QEL-YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             -EE-E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             CEE-ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence            777 77777775422 244556677777777777776321   12344567777666

>PLN03150 hypothetical protein; Provisional

Probab=99.23  E-value=2.8e-11  Score=106.88  Aligned_cols=108  Identities=37%  Similarity=0.653  Sum_probs=93.2

Q ss_pred             CCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEcc
Q 038699           22 QLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLS  101 (237)
Q Consensus        22 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~  101 (237)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47789999999998889889999999999999999988889889999999999999999998889889999999999999


Q ss_pred             CCcccccCCccccCc-cCccccccCcCccc
Q 038699          102 QNNLIGTIPFQIGNL-VGLQDLQDLSYNSL  130 (237)
Q Consensus       102 ~n~~~~~~~~~~~~l-~~L~~L~~l~~n~~  130 (237)
                      +|.+.+..|..+... .++..+ ++.+|..
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l-~~~~N~~  527 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASF-NFTDNAG  527 (623)
T ss_pred             CCcccccCChHHhhccccCceE-EecCCcc
Confidence            999988888877653 355666 7777754

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.18  E-value=4.6e-12  Score=98.86  Aligned_cols=124  Identities=31%  Similarity=0.343  Sum_probs=65.3

Q ss_pred             CCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeC
Q 038699           70 NLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNL  149 (237)
Q Consensus        70 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l  149 (237)
                      .|+++|+++|.|. .+.+...-.|.++.|++++|.+...  ..+..+++|..| ++++|.+. ....+-..+.+.+.|.+
T Consensus       285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~L-DLS~N~Ls-~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLL-DLSGNLLA-ECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEe-ecccchhH-hhhhhHhhhcCEeeeeh
Confidence            4556666666665 4444555556666666666665422  235556666666 66666655 33333334555666666


Q ss_pred             cCCcCcCccCccccCCCCCCEEEcCCCcCcC--CCCCCCccCCCccchhccCC
Q 038699          150 SHNNLSGEIPASLSSMLSLVAVNLSYNNLEG--PLPDGSVFSSSQSSAFTNNK  200 (237)
Q Consensus       150 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~l~~~~l~~n~  200 (237)
                      +.|.|.  ....+..+-+|..||+++|+|..  .+.....+|-+..+.+.+||
T Consensus       360 a~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  360 AQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             hhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence            666553  12234455556666666666541  22333444555555555554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.18  E-value=2.1e-12  Score=100.73  Aligned_cols=133  Identities=31%  Similarity=0.360  Sum_probs=108.4

Q ss_pred             CCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCccccCccCcccc
Q 038699           43 NLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDL  122 (237)
Q Consensus        43 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  122 (237)
                      ....|+++++++|.|+ .+..+..-+|+++.|+++.|.+...  +.+..+++|++|++++|.++ ....+-..+-+++.|
T Consensus       282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL  357 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL  357 (490)
T ss_pred             hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence            3457899999999998 7788888899999999999999843  34888999999999999987 444556677888888


Q ss_pred             ccCcCcccccccChhhcCCCCCCeEeCcCCcCcC-ccCccccCCCCCCEEEcCCCcCcCCC
Q 038699          123 QDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSG-EIPASLSSMLSLVAVNLSYNNLEGPL  182 (237)
Q Consensus       123 ~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~n~l~~~~  182 (237)
                       .++.|.+.+.  .-++.+-+|..||+++|+|.. .....++.+|.|+++.+.+|++.+.+
T Consensus       358 -~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  358 -KLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             -ehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence             9999998632  335677889999999999975 23467889999999999999998433

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.07  E-value=1.4e-10  Score=70.81  Aligned_cols=59  Identities=41%  Similarity=0.549  Sum_probs=30.2

Q ss_pred             CCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699           22 QLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR   80 (237)
Q Consensus        22 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   80 (237)
                      +|++|++++|++....+..|..+++|++|++++|.++...++.|..+++|++|++++|.
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            44555555555553334445555555555555555554444455555555555555543

...

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=4e-11  Score=97.64  Aligned_cols=160  Identities=28%  Similarity=0.278  Sum_probs=78.6

Q ss_pred             CCCCCCcEEEccCCcCCCc--cCccccCCCCCCEEeccCCcccccCccc--ccCCCCCCEEEccCCcCcCc-ccccccCC
Q 038699           18 GSLSQLVELHLSSNQLSGE--IPAHIGNLTELSTLSLNGNNISGQIPEE--IGGLLNLDSLDLSMNRLSGP-IPNQIGEL   92 (237)
Q Consensus        18 ~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~i~~~-~~~~~~~l   92 (237)
                      ..|++++.|+|+.|-+..-  +......+|+|+.|+++.|.+. .+.+.  -..++.|+.|.++.|++... +......+
T Consensus       143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~-~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f  221 (505)
T KOG3207|consen  143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS-NFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF  221 (505)
T ss_pred             hhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc-CCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence            4455666666666544421  1222245556666666666554 11111  11345555666666655421 11122345


Q ss_pred             CCCCEEEccCCcccccCCccccCccCccccccCcCcccccccC-hhhcCCCCCCeEeCcCCcCcC-ccCcc-----ccCC
Q 038699           93 RDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIP-AQLGKLTRLQSLNLSHNNLSG-EIPAS-----LSSM  165 (237)
Q Consensus        93 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~-~~~~~-----~~~~  165 (237)
                      |+|+.|.+..|.....-......+..|+.| ++++|++.+... .....++.|+.|+++.+++++ ..|+.     ...+
T Consensus       222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~L-dLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f  300 (505)
T KOG3207|consen  222 PSLEVLYLEANEIILIKATSTKILQTLQEL-DLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTF  300 (505)
T ss_pred             CcHHHhhhhcccccceecchhhhhhHHhhc-cccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccc
Confidence            566666666653221222233344556666 666666553321 223455666666666666654 12322     2345


Q ss_pred             CCCCEEEcCCCcCc
Q 038699          166 LSLVAVNLSYNNLE  179 (237)
Q Consensus       166 ~~L~~L~l~~n~l~  179 (237)
                      ++|++|++..|++.
T Consensus       301 ~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  301 PKLEYLNISENNIR  314 (505)
T ss_pred             ccceeeecccCccc
Confidence            66777777777665

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.04  E-value=2.3e-10  Score=69.82  Aligned_cols=61  Identities=39%  Similarity=0.621  Sum_probs=48.7

Q ss_pred             CCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCCcc
Q 038699           45 TELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNL  105 (237)
Q Consensus        45 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~  105 (237)
                      |+|++|++++|.++...+..|..+++|++|++++|.+....+..|..+++|++|++++|.+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4678888888888866667888888888888888888866667788888888888888764

...

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.02  E-value=1.6e-11  Score=97.33  Aligned_cols=184  Identities=21%  Similarity=0.185  Sum_probs=108.2

Q ss_pred             cCCCCCCcEEEccCCcCCCccCccc----cCCCCCCEEeccCCcccccCc-------------ccccCCCCCCEEEccCC
Q 038699           17 IGSLSQLVELHLSSNQLSGEIPAHI----GNLTELSTLSLNGNNISGQIP-------------EEIGGLLNLDSLDLSMN   79 (237)
Q Consensus        17 ~~~l~~L~~L~L~~n~i~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~-------------~~~~~l~~L~~L~l~~n   79 (237)
                      +..+++|+.++|++|-+....+..|    ..+..|++|.|.+|.+.....             ...+.-+.|+.+...+|
T Consensus        88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN  167 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN  167 (382)
T ss_pred             HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence            3456678888888887764433333    456777888888877652111             11233457777777777


Q ss_pred             cCcCc----ccccccCCCCCCEEEccCCccccc----CCccccCccCccccccCcCccccccc----ChhhcCCCCCCeE
Q 038699           80 RLSGP----IPNQIGELRDLRILNLSQNNLIGT----IPFQIGNLVGLQDLQDLSYNSLTGEI----PAQLGKLTRLQSL  147 (237)
Q Consensus        80 ~i~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~~l~~n~~~~~~----~~~~~~~~~L~~L  147 (237)
                      .+...    +...++..+.|+.+.+.+|.|...    ....+.++++|+.| ++++|.++...    ..+++.+++|+.+
T Consensus       168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevL-dl~DNtft~egs~~LakaL~s~~~L~El  246 (382)
T KOG1909|consen  168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVL-DLRDNTFTLEGSVALAKALSSWPHLREL  246 (382)
T ss_pred             ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceee-ecccchhhhHHHHHHHHHhcccchheee
Confidence            76532    233456667777777777776422    23456677777777 77777765322    2345566777777


Q ss_pred             eCcCCcCcCccCccc----c-CCCCCCEEEcCCCcCcCCC-----CCCCccCCCccchhccCCc
Q 038699          148 NLSHNNLSGEIPASL----S-SMLSLVAVNLSYNNLEGPL-----PDGSVFSSSQSSAFTNNKD  201 (237)
Q Consensus       148 ~l~~n~l~~~~~~~~----~-~~~~L~~L~l~~n~l~~~~-----~~~~~~~~l~~~~l~~n~~  201 (237)
                      ++++|.+......+|    . ..++|+.|.+++|.++..-     -.....+.+..+.+++|..
T Consensus       247 ~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  247 NLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            777777654322222    1 2567777777777775211     0112245566666666643

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=3.5e-11  Score=97.93  Aligned_cols=178  Identities=28%  Similarity=0.323  Sum_probs=128.4

Q ss_pred             EEecCCcCCCCCC--cccCCCCCCcEEEccCCcCCCccCcc-ccCCCCCCEEeccCCccccc-CcccccCCCCCCEEEcc
Q 038699            2 LGLAGNSIGGKIP--AEIGSLSQLVELHLSSNQLSGEIPAH-IGNLTELSTLSLNGNNISGQ-IPEEIGGLLNLDSLDLS   77 (237)
Q Consensus         2 L~l~~n~~~~~~~--~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~   77 (237)
                      |||++|-+....+  .-...+++|+.|+++.|++.-..... -..+++|+.|.++.|.++.. +-.....+|+|+.|++.
T Consensus       151 LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~  230 (505)
T KOG3207|consen  151 LDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLE  230 (505)
T ss_pred             ecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhh
Confidence            6777776664333  22357899999999999887221111 12568999999999998832 22234578999999999


Q ss_pred             CCcCcCcccccccCCCCCCEEEccCCcccccC-CccccCccCccccccCcCcccccccChh------hcCCCCCCeEeCc
Q 038699           78 MNRLSGPIPNQIGELRDLRILNLSQNNLIGTI-PFQIGNLVGLQDLQDLSYNSLTGEIPAQ------LGKLTRLQSLNLS  150 (237)
Q Consensus        78 ~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~~l~~n~~~~~~~~~------~~~~~~L~~L~l~  150 (237)
                      .|............++.|+.|+|++|.+.... -.....++.|+.| +++.+.+.......      ...+++|+.|++.
T Consensus       231 ~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L-nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~  309 (505)
T KOG3207|consen  231 ANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL-NLSSTGIASIAEPDVESLDKTHTFPKLEYLNIS  309 (505)
T ss_pred             cccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh-hccccCcchhcCCCccchhhhcccccceeeecc
Confidence            99533243444567889999999999986432 1457788999999 99999987543222      3557899999999


Q ss_pred             CCcCcCc-cCccccCCCCCCEEEcCCCcCcC
Q 038699          151 HNNLSGE-IPASLSSMLSLVAVNLSYNNLEG  180 (237)
Q Consensus       151 ~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~  180 (237)
                      .|+|.+. ....+..+++|+.|.+..|.++.
T Consensus       310 ~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  310 ENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             cCccccccccchhhccchhhhhhcccccccc
Confidence            9999642 23456667888999999999874

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.95  E-value=1.1e-10  Score=98.74  Aligned_cols=165  Identities=31%  Similarity=0.415  Sum_probs=107.5

Q ss_pred             ecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcC
Q 038699            4 LAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSG   83 (237)
Q Consensus         4 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~   83 (237)
                      ++.|.+.. .-..+..+.+++.+++.+|.|.. +...+..+++|++|++++|.|+..  ..+..++.|+.|++.+|.|..
T Consensus        79 l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~  154 (414)
T KOG0531|consen   79 LRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISD  154 (414)
T ss_pred             cchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchhhheeccCcchh
Confidence            45555553 23346677888889999998884 333367788899999999988754  445677778899999998874


Q ss_pred             cccccccCCCCCCEEEccCCcccccCC-ccccCccCccccccCcCcccccccChhhcCCCC-------------------
Q 038699           84 PIPNQIGELRDLRILNLSQNNLIGTIP-FQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTR-------------------  143 (237)
Q Consensus        84 ~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~-------------------  143 (237)
                      .  ..+..++.|+.+++++|.+....+ . ...+..++.+ .+.+|.+.....  +..+..                   
T Consensus       155 ~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l-~l~~n~i~~i~~--~~~~~~l~~~~l~~n~i~~~~~l~~  228 (414)
T KOG0531|consen  155 I--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEEL-DLGGNSIREIEG--LDLLKKLVLLSLLDNKISKLEGLNE  228 (414)
T ss_pred             c--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHH-hccCCchhcccc--hHHHHHHHHhhcccccceeccCccc
Confidence            3  345668888889999988875544 2 4666777777 777777653211  111111                   


Q ss_pred             -----CCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCc
Q 038699          144 -----LQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE  179 (237)
Q Consensus       144 -----L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  179 (237)
                           |+.+++++|.+. ..+..+..+..+..|++..|++.
T Consensus       229 ~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  229 LVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             chhHHHHHHhcccCccc-cccccccccccccccchhhcccc
Confidence                 455666666655 22234445566666666666665

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.88  E-value=2.7e-10  Score=96.24  Aligned_cols=193  Identities=30%  Similarity=0.299  Sum_probs=131.1

Q ss_pred             CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699            1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR   80 (237)
Q Consensus         1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   80 (237)
                      +|++.+|.|+++.. .+..+++|++|++++|.|++..+  +..++.|+.|++.+|.+...  ..+..++.|+.+++++|.
T Consensus        99 ~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~  173 (414)
T KOG0531|consen   99 ALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNR  173 (414)
T ss_pred             eeeccccchhhccc-chhhhhcchheeccccccccccc--hhhccchhhheeccCcchhc--cCCccchhhhcccCCcch
Confidence            47888999986544 26678999999999999995543  56777899999999999743  456668999999999999


Q ss_pred             CcCccccc-ccCCCCCCEEEccCCcccccC--------------Ccc------ccCccC--ccccccCcCcccccccChh
Q 038699           81 LSGPIPNQ-IGELRDLRILNLSQNNLIGTI--------------PFQ------IGNLVG--LQDLQDLSYNSLTGEIPAQ  137 (237)
Q Consensus        81 i~~~~~~~-~~~l~~L~~L~l~~n~~~~~~--------------~~~------~~~l~~--L~~L~~l~~n~~~~~~~~~  137 (237)
                      +... ... ...+.+++.+.+..|.+....              ...      +.....  |+.+ ++.+|.+.. .+..
T Consensus       174 i~~i-e~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l-~l~~n~i~~-~~~~  250 (414)
T KOG0531|consen  174 IVDI-ENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLREL-YLSGNRISR-SPEG  250 (414)
T ss_pred             hhhh-hhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccchhHHHHHH-hcccCcccc-cccc
Confidence            8843 221 467777887777777654210              011      111122  6777 888888873 3244


Q ss_pred             hcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCC---CCC--CCccCCCccchhccCCccc
Q 038699          138 LGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGP---LPD--GSVFSSSQSSAFTNNKDLC  203 (237)
Q Consensus       138 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~--~~~~~~l~~~~l~~n~~l~  203 (237)
                      +..+..+..+++.+|.+...  ..+...+.+..+....|++...   ...  ....+.+....+.+|+.-.
T Consensus       251 ~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (414)
T KOG0531|consen  251 LENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK  319 (414)
T ss_pred             ccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccc
Confidence            56678899999999988632  2234556677777778877622   111  3445666677777775444

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.84  E-value=4.4e-10  Score=89.25  Aligned_cols=137  Identities=22%  Similarity=0.222  Sum_probs=63.5

Q ss_pred             cCCCCCCEEeccCCcccccCcccc----cCCCCCCEEEccCCcCcCcc-------------cccccCCCCCCEEEccCCc
Q 038699           42 GNLTELSTLSLNGNNISGQIPEEI----GGLLNLDSLDLSMNRLSGPI-------------PNQIGELRDLRILNLSQNN  104 (237)
Q Consensus        42 ~~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n~i~~~~-------------~~~~~~l~~L~~L~l~~n~  104 (237)
                      ..+++|++++|+.|.+....+..|    ..+..|++|++.+|.+...-             ......-+.|+.+...+|+
T Consensus        89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr  168 (382)
T KOG1909|consen   89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR  168 (382)
T ss_pred             hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence            344555566666555543333222    23455555555555554110             0112223455555555555


Q ss_pred             cccc----CCccccCccCccccccCcCccccccc----ChhhcCCCCCCeEeCcCCcCcC----ccCccccCCCCCCEEE
Q 038699          105 LIGT----IPFQIGNLVGLQDLQDLSYNSLTGEI----PAQLGKLTRLQSLNLSHNNLSG----EIPASLSSMLSLVAVN  172 (237)
Q Consensus       105 ~~~~----~~~~~~~l~~L~~L~~l~~n~~~~~~----~~~~~~~~~L~~L~l~~n~l~~----~~~~~~~~~~~L~~L~  172 (237)
                      +...    ....+...+.|+.+ .+..|.|....    ...|.++++|+.||+.+|.++.    .+...+..+++|++|+
T Consensus       169 len~ga~~~A~~~~~~~~leev-r~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~  247 (382)
T KOG1909|consen  169 LENGGATALAEAFQSHPTLEEV-RLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN  247 (382)
T ss_pred             cccccHHHHHHHHHhccccceE-EEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence            5321    12234444555555 55555543211    1234555556666665555542    1223344455555555


Q ss_pred             cCCCcCc
Q 038699          173 LSYNNLE  179 (237)
Q Consensus       173 l~~n~l~  179 (237)
                      +++|-+.
T Consensus       248 l~dcll~  254 (382)
T KOG1909|consen  248 LGDCLLE  254 (382)
T ss_pred             ccccccc
Confidence            5555554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.76  E-value=3.6e-11  Score=103.60  Aligned_cols=127  Identities=32%  Similarity=0.364  Sum_probs=71.4

Q ss_pred             CCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeC
Q 038699           70 NLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNL  149 (237)
Q Consensus        70 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l  149 (237)
                      +|...++++|.+. .+...++-++.|+.|+|++|++++.  +.+..+++|+.| |++.|.++ .+|..-..-.+|..|.+
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhL-DlsyN~L~-~vp~l~~~gc~L~~L~l  239 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHL-DLSYNCLR-HVPQLSMVGCKLQLLNL  239 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhccccccc-ccccchhc-cccccchhhhhheeeee
Confidence            4445555566555 4445555566666666666666533  256666666666 66666665 33322222234666666


Q ss_pred             cCCcCcCccCccccCCCCCCEEEcCCCcCcC--CCCCCCccCCCccchhccCCccc
Q 038699          150 SHNNLSGEIPASLSSMLSLVAVNLSYNNLEG--PLPDGSVFSSSQSSAFTNNKDLC  203 (237)
Q Consensus       150 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~l~~~~l~~n~~l~  203 (237)
                      ++|.++ . ...+.++.+|+.||+++|-+.+  ..-....+..+..+++.|||..|
T Consensus       240 rnN~l~-t-L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  240 RNNALT-T-LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             cccHHH-h-hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            666665 2 2234566666777777776652  12222344556666667776555

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.59  E-value=2.3e-08  Score=91.00  Aligned_cols=100  Identities=33%  Similarity=0.443  Sum_probs=46.5

Q ss_pred             CCcEEEccCCc--CCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEE
Q 038699           22 QLVELHLSSNQ--LSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILN   99 (237)
Q Consensus        22 ~L~~L~L~~n~--i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~   99 (237)
                      .|+.|-+.+|.  +.......|..++.|+.|++++|.-.+.+|+.++.+-+|++|+++++.+. .+|..+.++..|.+|+
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln  624 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN  624 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence            45555555443  23222223444555555555544333345555555555555555555555 4455555555555555


Q ss_pred             ccCCcccccCCccccCccCcccc
Q 038699          100 LSQNNLIGTIPFQIGNLVGLQDL  122 (237)
Q Consensus       100 l~~n~~~~~~~~~~~~l~~L~~L  122 (237)
                      +..+......+.....+.+|+.|
T Consensus       625 l~~~~~l~~~~~i~~~L~~Lr~L  647 (889)
T KOG4658|consen  625 LEVTGRLESIPGILLELQSLRVL  647 (889)
T ss_pred             cccccccccccchhhhcccccEE
Confidence            55444332333333334444444

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.54  E-value=2.5e-08  Score=90.76  Aligned_cols=174  Identities=28%  Similarity=0.358  Sum_probs=110.3

Q ss_pred             EecCCc--CCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699            3 GLAGNS--IGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR   80 (237)
Q Consensus         3 ~l~~n~--~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   80 (237)
                      -+.+|.  +.......|..++.|+.|+|++|.-.+.+|..++.+-+||+|+++.+.+. .+|..++++.+|.+|++..+.
T Consensus       551 ll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~  629 (889)
T KOG4658|consen  551 LLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTG  629 (889)
T ss_pred             EEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheecccccc
Confidence            344443  33333444778899999999988766688888889999999999999988 888899999999999998887


Q ss_pred             CcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccc-cChhhcCCCCCC----eEeCcCCcCc
Q 038699           81 LSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGE-IPAQLGKLTRLQ----SLNLSHNNLS  155 (237)
Q Consensus        81 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~-~~~~~~~~~~L~----~L~l~~n~l~  155 (237)
                      ....++.....+++|++|.+...... .....+..+.+|+.|..++. ..... ....+..+..|.    .+.+.++...
T Consensus       630 ~l~~~~~i~~~L~~Lr~L~l~~s~~~-~~~~~l~el~~Le~L~~ls~-~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~  707 (889)
T KOG4658|consen  630 RLESIPGILLELQSLRVLRLPRSALS-NDKLLLKELENLEHLENLSI-TISSVLLLEDLLGMTRLRSLLQSLSIEGCSKR  707 (889)
T ss_pred             ccccccchhhhcccccEEEeeccccc-cchhhHHhhhcccchhhhee-ecchhHhHhhhhhhHHHHHHhHhhhhcccccc
Confidence            66555666667899999888665422 11122333344444422221 11111 111122222222    3333333322


Q ss_pred             CccCccccCCCCCCEEEcCCCcCcC
Q 038699          156 GEIPASLSSMLSLVAVNLSYNNLEG  180 (237)
Q Consensus       156 ~~~~~~~~~~~~L~~L~l~~n~l~~  180 (237)
                       ..+..+..+.+|+.|.+.++.+..
T Consensus       708 -~~~~~~~~l~~L~~L~i~~~~~~e  731 (889)
T KOG4658|consen  708 -TLISSLGSLGNLEELSILDCGISE  731 (889)
T ss_pred             -eeecccccccCcceEEEEcCCCch
Confidence             455567778899999999888863

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.51  E-value=8.5e-10  Score=95.34  Aligned_cols=156  Identities=31%  Similarity=0.323  Sum_probs=114.0

Q ss_pred             CcccCCCCCCcEEEccCCcCCCccCccccC---------------------------------CCCCCEEeccCCccccc
Q 038699           14 PAEIGSLSQLVELHLSSNQLSGEIPAHIGN---------------------------------LTELSTLSLNGNNISGQ   60 (237)
Q Consensus        14 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~---------------------------------l~~L~~L~l~~n~l~~~   60 (237)
                      |-.+....+|+.|.+.++.+...  ..+..                                 ...|...+.++|.+. .
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~  178 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-L  178 (1096)
T ss_pred             CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-h
Confidence            33456678999999999887521  01110                                 124555666777776 6


Q ss_pred             CcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCc-cccCccCccccccCcCcccccccChhhc
Q 038699           61 IPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPF-QIGNLVGLQDLQDLSYNSLTGEIPAQLG  139 (237)
Q Consensus        61 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~~l~~n~~~~~~~~~~~  139 (237)
                      +..++.-++.|+.|+|+.|+++..  +.+..+++|++||+++|.+. .+|. ....+. |..| .+++|.++...  .+.
T Consensus       179 mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L-~lrnN~l~tL~--gie  251 (1096)
T KOG1859|consen  179 MDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLL-NLRNNALTTLR--GIE  251 (1096)
T ss_pred             HHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heee-eecccHHHhhh--hHH
Confidence            777888889999999999999844  37889999999999999998 4443 333343 8888 99999987332  245


Q ss_pred             CCCCCCeEeCcCCcCcCc-cCccccCCCCCCEEEcCCCcCc
Q 038699          140 KLTRLQSLNLSHNNLSGE-IPASLSSMLSLVAVNLSYNNLE  179 (237)
Q Consensus       140 ~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~  179 (237)
                      ++.+|..||+++|.+.+. ....+..+..|+.|.|.||++.
T Consensus       252 ~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  252 NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            788999999999988742 1223445678899999999997

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.45  E-value=4.1e-08  Score=76.92  Aligned_cols=161  Identities=27%  Similarity=0.276  Sum_probs=81.0

Q ss_pred             CCCCCcEEEccCCcCCC--ccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCc-CcccccccCCCCC
Q 038699           19 SLSQLVELHLSSNQLSG--EIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLS-GPIPNQIGELRDL   95 (237)
Q Consensus        19 ~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~-~~~~~~~~~l~~L   95 (237)
                      .++.+++++|.+|.|.+  .+...+.++|.|+.|+++.|++...+...-..+.+|+.|-+.+..+. ......+..+|.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            45667777777777662  23333456777777777777665222111124456666666666543 1222334556666


Q ss_pred             CEEEccCCccccc--CCccc---------------------------cCccCccccccCcCcccccc-cChhhcCCCCCC
Q 038699           96 RILNLSQNNLIGT--IPFQI---------------------------GNLVGLQDLQDLSYNSLTGE-IPAQLGKLTRLQ  145 (237)
Q Consensus        96 ~~L~l~~n~~~~~--~~~~~---------------------------~~l~~L~~L~~l~~n~~~~~-~~~~~~~~~~L~  145 (237)
                      +.++++.|.+...  .....                           ..++++..+ .+..|.+... ....+...+.+.
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv-~v~e~PlK~~s~ek~se~~p~~~  227 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV-FVCEGPLKTESSEKGSEPFPSLS  227 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe-eeecCcccchhhcccCCCCCcch
Confidence            6666666633210  00001                           112333333 3344433321 112233345555


Q ss_pred             eEeCcCCcCcCc-cCccccCCCCCCEEEcCCCcCcC
Q 038699          146 SLNLSHNNLSGE-IPASLSSMLSLVAVNLSYNNLEG  180 (237)
Q Consensus       146 ~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~  180 (237)
                      .|+++.++|.+. -.+.+.++++|..|.+++|++..
T Consensus       228 ~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  228 CLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             hhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            666666666542 23455666777777777777654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.40  E-value=2.9e-08  Score=69.17  Aligned_cols=131  Identities=22%  Similarity=0.247  Sum_probs=85.7

Q ss_pred             CCCEEEccCCcCcCccccc---ccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCe
Q 038699           70 NLDSLDLSMNRLSGPIPNQ---IGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQS  146 (237)
Q Consensus        70 ~L~~L~l~~n~i~~~~~~~---~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~  146 (237)
                      .+..++++.|.+. .+++.   +.....|+.+++++|.+.+..+..-..++..+.+ ++++|.+. .+|..+..++.|+.
T Consensus        28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~l-Nl~~neis-dvPeE~Aam~aLr~  104 (177)
T KOG4579|consen   28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTL-NLANNEIS-DVPEELAAMPALRS  104 (177)
T ss_pred             Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhh-hcchhhhh-hchHHHhhhHHhhh
Confidence            4455667777665 33333   3445566677888887764433334445577888 88888887 66766888888999


Q ss_pred             EeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCCCccCC-CccchhccCCccccc
Q 038699          147 LNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSS-SQSSAFTNNKDLCGK  205 (237)
Q Consensus       147 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-l~~~~l~~n~~l~~~  205 (237)
                      ++++.|.+. ..|..+..+.++..|+..+|.+. .+|-....+. .-...+.++++-.+.
T Consensus       105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~  162 (177)
T KOG4579|consen  105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDET  162 (177)
T ss_pred             cccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccC
Confidence            999998887 67777777888888998888887 4544323333 334444444433333

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=4e-09  Score=82.48  Aligned_cols=157  Identities=23%  Similarity=0.215  Sum_probs=101.5

Q ss_pred             CCCcEEEccCCcCCC-ccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCccc--ccccCCCCCCE
Q 038699           21 SQLVELHLSSNQLSG-EIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIP--NQIGELRDLRI   97 (237)
Q Consensus        21 ~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~--~~~~~l~~L~~   97 (237)
                      ..+++|+|+...|+. .+...+..+.+|+.|.+.++.+.+.+...++.-.+|+.|+++.+.-.....  -.+.+++.|..
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            357888888887773 244456678888888888888887777777788888888888764321211  24567888888


Q ss_pred             EEccCCccccc-CCccccCc-cCccccccCcCcccc---cccChhhcCCCCCCeEeCcCC-cCcCccCccccCCCCCCEE
Q 038699           98 LNLSQNNLIGT-IPFQIGNL-VGLQDLQDLSYNSLT---GEIPAQLGKLTRLQSLNLSHN-NLSGEIPASLSSMLSLVAV  171 (237)
Q Consensus        98 L~l~~n~~~~~-~~~~~~~l-~~L~~L~~l~~n~~~---~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L  171 (237)
                      |++++|..... +.-.+.+. ++|+.| +++++.-.   .....-.+.+++|.+||+++| .++......|..++.|++|
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~L-NlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l  343 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQL-NLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL  343 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhh-hhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence            88888866422 11122222 456667 77765421   111222356788888888877 3444444556677888888


Q ss_pred             EcCCCcC
Q 038699          172 NLSYNNL  178 (237)
Q Consensus       172 ~l~~n~l  178 (237)
                      .++.|..
T Consensus       344 SlsRCY~  350 (419)
T KOG2120|consen  344 SLSRCYD  350 (419)
T ss_pred             ehhhhcC
Confidence            8887754

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.36  E-value=4.1e-09  Score=82.45  Aligned_cols=173  Identities=25%  Similarity=0.187  Sum_probs=123.3

Q ss_pred             CEEecCCcCCCCCCc-ccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCc-cccc-CcccccCCCCCCEEEcc
Q 038699            1 MLGLAGNSIGGKIPA-EIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNN-ISGQ-IPEEIGGLLNLDSLDLS   77 (237)
Q Consensus         1 ~L~l~~n~~~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~   77 (237)
                      +|||+...|+..--. -++.|.+|+.|.+.++++.+.+...+++-.+|+.|+++.+. ++.. ..-.+..+..|++|+++
T Consensus       189 ~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNls  268 (419)
T KOG2120|consen  189 HLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLS  268 (419)
T ss_pred             HhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCch
Confidence            367777777743332 35778999999999999998888888899999999999864 3311 12345688999999999


Q ss_pred             CCcCcCcccccc-c-CCCCCCEEEccCCccc---ccCCccccCccCccccccCcCcc-cccccChhhcCCCCCCeEeCcC
Q 038699           78 MNRLSGPIPNQI-G-ELRDLRILNLSQNNLI---GTIPFQIGNLVGLQDLQDLSYNS-LTGEIPAQLGKLTRLQSLNLSH  151 (237)
Q Consensus        78 ~n~i~~~~~~~~-~-~l~~L~~L~l~~n~~~---~~~~~~~~~l~~L~~L~~l~~n~-~~~~~~~~~~~~~~L~~L~l~~  151 (237)
                      +|.........+ . --++|+.|+++++.-.   ..+..-...+++|..| |+++|. ++......|..++.|++|.++.
T Consensus       269 Wc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L-DLSD~v~l~~~~~~~~~kf~~L~~lSlsR  347 (419)
T KOG2120|consen  269 WCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL-DLSDSVMLKNDCFQEFFKFNYLQHLSLSR  347 (419)
T ss_pred             HhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee-ccccccccCchHHHHHHhcchheeeehhh
Confidence            998864322211 1 1357888999887532   1122234567899999 999876 4433344577889999999999


Q ss_pred             CcCcCccCc---cccCCCCCCEEEcCCC
Q 038699          152 NNLSGEIPA---SLSSMLSLVAVNLSYN  176 (237)
Q Consensus       152 n~l~~~~~~---~~~~~~~L~~L~l~~n  176 (237)
                      |..  ..|.   .+...|+|.+||+-++
T Consensus       348 CY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  348 CYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hcC--CChHHeeeeccCcceEEEEeccc
Confidence            864  3343   3556789999998775

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.35  E-value=8.2e-07  Score=65.93  Aligned_cols=105  Identities=24%  Similarity=0.213  Sum_probs=50.9

Q ss_pred             CCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCccccccc-ChhhcCCCCCCeEe
Q 038699           70 NLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEI-PAQLGKLTRLQSLN  148 (237)
Q Consensus        70 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~-~~~~~~~~~L~~L~  148 (237)
                      ....+|+++|.+...  ..|..++.|.+|.+++|.|+...|.--..+++|..| .+.+|.+.... -..+..+++|+.|.
T Consensus        43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L-~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTL-ILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceE-EecCcchhhhhhcchhccCCccceee
Confidence            344445555544411  234444555555555555554444333334445555 55555544221 12244556666666


Q ss_pred             CcCCcCcCc---cCccccCCCCCCEEEcCCCc
Q 038699          149 LSHNNLSGE---IPASLSSMLSLVAVNLSYNN  177 (237)
Q Consensus       149 l~~n~l~~~---~~~~~~~~~~L~~L~l~~n~  177 (237)
                      +-+|.++..   -...+..+|+|+.||++.-.
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            666655521   11234456777777766543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.30  E-value=2.9e-08  Score=69.17  Aligned_cols=80  Identities=30%  Similarity=0.450  Sum_probs=33.8

Q ss_pred             CCEEeccCCcccccCccccc-CCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccC
Q 038699           47 LSTLSLNGNNISGQIPEEIG-GLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDL  125 (237)
Q Consensus        47 L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l  125 (237)
                      |...++++|.+. .+|..|. ..+.+++|++++|.+. .+|..+..++.|+.|+++.|.+. ..|+.+..+.++..| +.
T Consensus        55 l~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L-ds  130 (177)
T KOG4579|consen   55 LTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML-DS  130 (177)
T ss_pred             EEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh-cC
Confidence            333444444444 2333222 2234444444444444 33333444444444444444443 333333334444444 44


Q ss_pred             cCccc
Q 038699          126 SYNSL  130 (237)
Q Consensus       126 ~~n~~  130 (237)
                      .+|.+
T Consensus       131 ~~na~  135 (177)
T KOG4579|consen  131 PENAR  135 (177)
T ss_pred             CCCcc
Confidence            44443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.30  E-value=1.3e-07  Score=74.13  Aligned_cols=189  Identities=25%  Similarity=0.247  Sum_probs=112.8

Q ss_pred             CCCCcccCCCCCCcEEEccCCcCCCcc-Cccc-cCCCCCCEEeccCCccccc--CcccccCCCCCCEEEccCCcCcCccc
Q 038699           11 GKIPAEIGSLSQLVELHLSSNQLSGEI-PAHI-GNLTELSTLSLNGNNISGQ--IPEEIGGLLNLDSLDLSMNRLSGPIP   86 (237)
Q Consensus        11 ~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~-~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~i~~~~~   86 (237)
                      +..+-.++....+..+.+.++.|-... ...| ..+..++.++|..|.+++.  +...+..+|.|++|+++.|.+...+.
T Consensus        35 g~s~~~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~  114 (418)
T KOG2982|consen   35 GLSYLGVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK  114 (418)
T ss_pred             ccceeeeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc
Confidence            333434444455656777777665221 1122 3567899999999998742  34456789999999999999874333


Q ss_pred             ccccCCCCCCEEEccCCccccc-CCccccCccCccccccCcCcccccccCh-----------------------------
Q 038699           87 NQIGELRDLRILNLSQNNLIGT-IPFQIGNLVGLQDLQDLSYNSLTGEIPA-----------------------------  136 (237)
Q Consensus        87 ~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~~l~~n~~~~~~~~-----------------------------  136 (237)
                      .......+|+.|.+.+..+... ....+..+|.++.+ .++.|..+....+                             
T Consensus       115 ~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel-HmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~  193 (418)
T KOG2982|consen  115 SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL-HMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNK  193 (418)
T ss_pred             cCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhh-hhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHh
Confidence            2224567899999999877533 33456677888888 8888744321100                             


Q ss_pred             hhcCCCCCCeEeCcCCcCcCc-cCccccCCCCCCEEEcCCCcCcC--CCCCCCccCCCccchhccCC
Q 038699          137 QLGKLTRLQSLNLSHNNLSGE-IPASLSSMLSLVAVNLSYNNLEG--PLPDGSVFSSSQSSAFTNNK  200 (237)
Q Consensus       137 ~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~l~~~~l~~n~  200 (237)
                      --+.++++..+-+..|.+.+. ....+..++.+..|+|+.|+|..  .+++...|+.+..+....+|
T Consensus       194 l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~P  260 (418)
T KOG2982|consen  194 LSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENP  260 (418)
T ss_pred             HHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCc
Confidence            011234555555555544421 12233445566666777666652  33444556666666666654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.29  E-value=1.3e-06  Score=64.85  Aligned_cols=123  Identities=27%  Similarity=0.293  Sum_probs=86.9

Q ss_pred             EEecCCcCCCCCCcccC-CCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699            2 LGLAGNSIGGKIPAEIG-SLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR   80 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   80 (237)
                      +||++..+..+.-  ++ -......++|++|.+.. . +.|..++.|.+|.+.+|.|+...|..-.-+++|+.|.+.+|.
T Consensus        24 ~~LR~lkip~ien--lg~~~d~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs   99 (233)
T KOG1644|consen   24 LDLRGLKIPVIEN--LGATLDQFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS   99 (233)
T ss_pred             cccccccccchhh--ccccccccceecccccchhh-c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence            4666666664333  21 23567788999998883 2 347788999999999999996666655667889999999998


Q ss_pred             CcCccc-ccccCCCCCCEEEccCCcccccC---CccccCccCccccccCcCcc
Q 038699           81 LSGPIP-NQIGELRDLRILNLSQNNLIGTI---PFQIGNLVGLQDLQDLSYNS  129 (237)
Q Consensus        81 i~~~~~-~~~~~l~~L~~L~l~~n~~~~~~---~~~~~~l~~L~~L~~l~~n~  129 (237)
                      +..... +.+..++.|++|.+-+|.++..-   -..+..+++|+.| |+..-.
T Consensus       100 i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~L-DF~kVt  151 (233)
T KOG1644|consen  100 IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTL-DFQKVT  151 (233)
T ss_pred             hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEe-ehhhhh
Confidence            873211 34567889999999998876331   2346677888888 776543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.26  E-value=7.6e-08  Score=74.57  Aligned_cols=205  Identities=19%  Similarity=0.205  Sum_probs=129.5

Q ss_pred             EEecCCcCCCCCCccc----CCCCCCcEEEccCCcCC---Cc-------cCccccCCCCCCEEeccCCcccccCccc---
Q 038699            2 LGLAGNSIGGKIPAEI----GSLSQLVELHLSSNQLS---GE-------IPAHIGNLTELSTLSLNGNNISGQIPEE---   64 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~----~~l~~L~~L~L~~n~i~---~~-------~~~~~~~l~~L~~L~l~~n~l~~~~~~~---   64 (237)
                      +|||||-|......++    .+-.+|+..++++-...   +.       ..+++.+||+|+.++|+.|.+....|..   
T Consensus        35 vdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d  114 (388)
T COG5238          35 VDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGD  114 (388)
T ss_pred             EeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHH
Confidence            5788888875544443    34466777777654322   11       2344567889999999999887655543   


Q ss_pred             -ccCCCCCCEEEccCCcCcCc----ccc---------cccCCCCCCEEEccCCcccccC----CccccCccCccccccCc
Q 038699           65 -IGGLLNLDSLDLSMNRLSGP----IPN---------QIGELRDLRILNLSQNNLIGTI----PFQIGNLVGLQDLQDLS  126 (237)
Q Consensus        65 -~~~l~~L~~L~l~~n~i~~~----~~~---------~~~~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~~l~  126 (237)
                       +.....|.+|.+++|.+...    +..         ....-|.|+.+...+|++..-.    ...+....+|+.+ .+.
T Consensus       115 ~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~v-ki~  193 (388)
T COG5238         115 LISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEV-KIQ  193 (388)
T ss_pred             HHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeE-Eee
Confidence             34567889999998887521    111         1234577888888888875221    1123333567777 777


Q ss_pred             CcccccccCh-----hhcCCCCCCeEeCcCCcCcC----ccCccccCCCCCCEEEcCCCcCcCCCC-------CCCccCC
Q 038699          127 YNSLTGEIPA-----QLGKLTRLQSLNLSHNNLSG----EIPASLSSMLSLVAVNLSYNNLEGPLP-------DGSVFSS  190 (237)
Q Consensus       127 ~n~~~~~~~~-----~~~~~~~L~~L~l~~n~l~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~-------~~~~~~~  190 (237)
                      .|.|......     -+.++.+|+.||++.|.++-    .+..++..++.|++|.+..|-++..-.       .-..+++
T Consensus       194 qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~  273 (388)
T COG5238         194 QNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPN  273 (388)
T ss_pred             ecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCC
Confidence            7877643221     23467889999999998874    233455667788999998887763211       1134667


Q ss_pred             CccchhccCCcccccCC
Q 038699          191 SQSSAFTNNKDLCGKVQ  207 (237)
Q Consensus       191 l~~~~l~~n~~l~~~~~  207 (237)
                      +..+.+++|..--|.+.
T Consensus       274 l~~L~~~Yne~~~~~i~  290 (388)
T COG5238         274 LMPLPGDYNERRGGIIL  290 (388)
T ss_pred             ccccccchhhhcCceee
Confidence            77777777765555443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.21  E-value=4.3e-06  Score=58.73  Aligned_cols=124  Identities=14%  Similarity=0.190  Sum_probs=53.1

Q ss_pred             CcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCC
Q 038699           14 PAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELR   93 (237)
Q Consensus        14 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~   93 (237)
                      ..+|.++.+|+.+.+.. .+......+|..+.+|+.+.+..+ +.......|..+++++.+.+.. .+.......|..++
T Consensus         5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~   81 (129)
T PF13306_consen    5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT   81 (129)
T ss_dssp             TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred             HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence            34567777777777764 455455666777777777777664 5444455666666677777754 33323334555566


Q ss_pred             CCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCC
Q 038699           94 DLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRL  144 (237)
Q Consensus        94 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L  144 (237)
                      +|+.+.+..+ +.......+... +++.+ .+.. .+.......|.++++|
T Consensus        82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i-~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEI-NIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             TECEEEETTT--BEEHTTTTTT--T--EE-E-TT-B-SS----GGG-----
T ss_pred             cccccccCcc-ccEEchhhhcCC-CceEE-EECC-CccEECCccccccccC
Confidence            6666666544 332333344444 55555 4443 2222334444444443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.14  E-value=2.8e-06  Score=47.76  Aligned_cols=37  Identities=35%  Similarity=0.629  Sum_probs=28.4

Q ss_pred             CCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCc
Q 038699          142 TRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE  179 (237)
Q Consensus       142 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  179 (237)
                      ++|++|++++|+|+ .+|..+..+++|+.|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            46788888888888 45656788888888888888887

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.09  E-value=5.1e-06  Score=46.71  Aligned_cols=36  Identities=47%  Similarity=0.745  Sum_probs=15.2

Q ss_pred             CCcEEEccCCcCCCccCccccCCCCCCEEeccCCccc
Q 038699           22 QLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNIS   58 (237)
Q Consensus        22 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~   58 (237)
                      +|++|++++|+|+ .++..+.++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3444444444444 23333444444444444444444

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.02  E-value=2.1e-05  Score=55.25  Aligned_cols=124  Identities=16%  Similarity=0.226  Sum_probs=65.0

Q ss_pred             CccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCccccCcc
Q 038699           38 PAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLV  117 (237)
Q Consensus        38 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~  117 (237)
                      ..+|..+.+|+.+.+.. .+.......|..+++|+.+.+..+ +.......|..+++++.+.+.. .+.......+..++
T Consensus         5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~   81 (129)
T PF13306_consen    5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT   81 (129)
T ss_dssp             TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred             HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence            45677888888888875 455566677888888888888775 5534445677777888888865 33334445677778


Q ss_pred             CccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCC
Q 038699          118 GLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSL  168 (237)
Q Consensus       118 ~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L  168 (237)
                      +++.+ .+..+ +.......|.++ +++.+.+.. .+.......|.++++|
T Consensus        82 ~l~~i-~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   82 NLKNI-DIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             TECEE-EETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccccc-ccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            88887 77655 444566667776 788887765 3333555566666554

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.95  E-value=8.5e-05  Score=61.94  Aligned_cols=136  Identities=20%  Similarity=0.285  Sum_probs=81.5

Q ss_pred             CCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCC-cCcCcccccccCCCCCC
Q 038699           18 GSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMN-RLSGPIPNQIGELRDLR   96 (237)
Q Consensus        18 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~i~~~~~~~~~~l~~L~   96 (237)
                      ..+.+++.|++++|.++ .+|.   -..+|+.|.+++|.-...+|+.+.  ++|+.|++++| .+. .+|.      .|+
T Consensus        49 ~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe  115 (426)
T PRK15386         49 EEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVR  115 (426)
T ss_pred             HHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------ccc
Confidence            34678889999988777 4552   224689999987544336665442  57899999887 443 3443      467


Q ss_pred             EEEccCCcccccCCccccCc-cCccccccCcCcc-cc-cccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEc
Q 038699           97 ILNLSQNNLIGTIPFQIGNL-VGLQDLQDLSYNS-LT-GEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNL  173 (237)
Q Consensus        97 ~L~l~~n~~~~~~~~~~~~l-~~L~~L~~l~~n~-~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l  173 (237)
                      .|++..+... .    +..+ ++|+.| .+..+. .. ...+..  -.++|+.|++++|... ..|..+.  .+|+.|++
T Consensus       116 ~L~L~~n~~~-~----L~~LPssLk~L-~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~l  184 (426)
T PRK15386        116 SLEIKGSATD-S----IKNVPNGLTSL-SINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITL  184 (426)
T ss_pred             eEEeCCCCCc-c----cccCcchHhhe-eccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEe
Confidence            7777665432 1    1122 245566 554322 11 011111  1367999999988765 4444332  68889998


Q ss_pred             CCCc
Q 038699          174 SYNN  177 (237)
Q Consensus       174 ~~n~  177 (237)
                      +.+.
T Consensus       185 s~n~  188 (426)
T PRK15386        185 HIEQ  188 (426)
T ss_pred             cccc
Confidence            8763

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.86  E-value=1.1e-05  Score=72.00  Aligned_cols=133  Identities=19%  Similarity=0.194  Sum_probs=86.3

Q ss_pred             CCCCEEeccCCcccc--cCcccccCCCCCCEEEccCCcCc-CcccccccCCCCCCEEEccCCcccccCCccccCccCccc
Q 038699           45 TELSTLSLNGNNISG--QIPEEIGGLLNLDSLDLSMNRLS-GPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD  121 (237)
Q Consensus        45 ~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  121 (237)
                      .+|++|++++...-.  .....-.-+|+|+.|.+.+-.+. +.+.....++++|..||++++.++..  ..++.+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            478888887743221  11122235788888888876654 22344566788899999988888643  56778888888


Q ss_pred             cccCcCccccc-ccChhhcCCCCCCeEeCcCCcCcCcc------CccccCCCCCCEEEcCCCcCcC
Q 038699          122 LQDLSYNSLTG-EIPAQLGKLTRLQSLNLSHNNLSGEI------PASLSSMLSLVAVNLSYNNLEG  180 (237)
Q Consensus       122 L~~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~------~~~~~~~~~L~~L~l~~n~l~~  180 (237)
                      | .+.+=.+.. ..-..+..+.+|+.||+|.....+..      .+....+|.|+.||.++..+..
T Consensus       200 L-~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  200 L-SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             H-hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            7 666655442 12234557889999999876544211      1223347899999999877763

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.74  E-value=9.9e-06  Score=72.36  Aligned_cols=149  Identities=24%  Similarity=0.309  Sum_probs=95.3

Q ss_pred             CCCcEEEccCCcCCCc-cCccc-cCCCCCCEEeccCCcccc-cCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCE
Q 038699           21 SQLVELHLSSNQLSGE-IPAHI-GNLTELSTLSLNGNNISG-QIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRI   97 (237)
Q Consensus        21 ~~L~~L~L~~n~i~~~-~~~~~-~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~   97 (237)
                      .+|++|++++...... .+..+ ..+|.|+.|.+.+-.+.. .+.....++|+|..||++++++...  ..++.+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            5688888888654422 22222 357899999998866542 2234456788999999999988844  56788888888


Q ss_pred             EEccCCcccc-cCCccccCccCccccccCcCccccccc------ChhhcCCCCCCeEeCcCCcCcCccCccc-cCCCCCC
Q 038699           98 LNLSQNNLIG-TIPFQIGNLVGLQDLQDLSYNSLTGEI------PAQLGKLTRLQSLNLSHNNLSGEIPASL-SSMLSLV  169 (237)
Q Consensus        98 L~l~~n~~~~-~~~~~~~~l~~L~~L~~l~~n~~~~~~------~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~~~~L~  169 (237)
                      |.+.+=.+.. ..-..+..+++|+.| |++........      -+-...+|+|+.||.+++.+.....+.+ ..-++|+
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vL-DIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~  278 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVL-DISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ  278 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCee-eccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence            8877644432 112356678888888 88876543211      1123457899999999988765433322 2234444


Q ss_pred             EEE
Q 038699          170 AVN  172 (237)
Q Consensus       170 ~L~  172 (237)
                      .+.
T Consensus       279 ~i~  281 (699)
T KOG3665|consen  279 QIA  281 (699)
T ss_pred             hhh
Confidence            443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.61  E-value=2.1e-05  Score=61.33  Aligned_cols=166  Identities=23%  Similarity=0.235  Sum_probs=111.4

Q ss_pred             cccCCCCCCcEEEccCCcCCCccCcc----ccCCCCCCEEeccCCcccccCcc-------------cccCCCCCCEEEcc
Q 038699           15 AEIGSLSQLVELHLSSNQLSGEIPAH----IGNLTELSTLSLNGNNISGQIPE-------------EIGGLLNLDSLDLS   77 (237)
Q Consensus        15 ~~~~~l~~L~~L~L~~n~i~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~-------------~~~~l~~L~~L~l~   77 (237)
                      +++..|++++..+|++|-+....|..    ++.-..|.+|.+++|.+....-.             ....-|.|+...+.
T Consensus        86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg  165 (388)
T COG5238          86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG  165 (388)
T ss_pred             HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence            34567899999999999888655543    35567899999999987622111             12345789999999


Q ss_pred             CCcCcCcccc-----cccCCCCCCEEEccCCcccccC-----CccccCccCccccccCcCccccccc----ChhhcCCCC
Q 038699           78 MNRLSGPIPN-----QIGELRDLRILNLSQNNLIGTI-----PFQIGNLVGLQDLQDLSYNSLTGEI----PAQLGKLTR  143 (237)
Q Consensus        78 ~n~i~~~~~~-----~~~~l~~L~~L~l~~n~~~~~~-----~~~~~~l~~L~~L~~l~~n~~~~~~----~~~~~~~~~  143 (237)
                      .|++. ..+.     .+.....|+.+.+.+|.|....     -..+..+.+|+.| ++.+|.++-..    ..++..++.
T Consensus       166 rNRle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevL-DlqDNtft~~gS~~La~al~~W~~  243 (388)
T COG5238         166 RNRLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVL-DLQDNTFTLEGSRYLADALCEWNL  243 (388)
T ss_pred             cchhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceee-eccccchhhhhHHHHHHHhcccch
Confidence            99886 2222     2334467888888888876331     1234456788888 99998876322    344566778


Q ss_pred             CCeEeCcCCcCcCccCc----ccc--CCCCCCEEEcCCCcCcCCC
Q 038699          144 LQSLNLSHNNLSGEIPA----SLS--SMLSLVAVNLSYNNLEGPL  182 (237)
Q Consensus       144 L~~L~l~~n~l~~~~~~----~~~--~~~~L~~L~l~~n~l~~~~  182 (237)
                      |+.|.+..|-+......    .|.  ..++|..|-..+|...+.+
T Consensus       244 lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~  288 (388)
T COG5238         244 LRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGI  288 (388)
T ss_pred             hhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCce
Confidence            88898888877543222    221  2478888888888876433

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.49  E-value=0.00099  Score=55.74  Aligned_cols=129  Identities=23%  Similarity=0.273  Sum_probs=78.3

Q ss_pred             CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCC-cccccCcccccCCCCCCEEEccCC
Q 038699            1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGN-NISGQIPEEIGGLLNLDSLDLSMN   79 (237)
Q Consensus         1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n   79 (237)
                      .|++++|.++.. | .+  -.+|++|.+.++.-...+|+.+.  ++|+.|.+++| .+. .+|.      +|+.|++..+
T Consensus        56 ~L~Is~c~L~sL-P-~L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~~n  122 (426)
T PRK15386         56 RLYIKDCDIESL-P-VL--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVRSLEIKGS  122 (426)
T ss_pred             EEEeCCCCCccc-C-CC--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------ccceEEeCCC
Confidence            378999988744 4 22  24699999988644446665443  58999999998 554 4443      5777887766


Q ss_pred             cCcCcccccccCC-CCCCEEEccCCccc--ccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCc
Q 038699           80 RLSGPIPNQIGEL-RDLRILNLSQNNLI--GTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNN  153 (237)
Q Consensus        80 ~i~~~~~~~~~~l-~~L~~L~l~~n~~~--~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~  153 (237)
                      ... .    +..+ ++|+.|.+.++...  ...+.  .-.++|+.| .+++|... ..|..+.  .+|+.|+++.+.
T Consensus       123 ~~~-~----L~~LPssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L-~Is~c~~i-~LP~~LP--~SLk~L~ls~n~  188 (426)
T PRK15386        123 ATD-S----IKNVPNGLTSLSINSYNPENQARIDN--LISPSLKTL-SLTGCSNI-ILPEKLP--ESLQSITLHIEQ  188 (426)
T ss_pred             CCc-c----cccCcchHhheecccccccccccccc--ccCCcccEE-EecCCCcc-cCccccc--ccCcEEEecccc
Confidence            543 1    2223 24666766443211  01111  112578888 88887755 3443332  578888887763

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.48  E-value=9.2e-05  Score=57.26  Aligned_cols=88  Identities=30%  Similarity=0.346  Sum_probs=46.0

Q ss_pred             ccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCC--cCcCcccccccCCCCCCEEEccCCccccc-CCccccCcc
Q 038699           41 IGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMN--RLSGPIPNQIGELRDLRILNLSQNNLIGT-IPFQIGNLV  117 (237)
Q Consensus        41 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~i~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~  117 (237)
                      ......|+.+.+.+..++..  ..+..+++|++|.++.|  .+...+.-....+++|+++++++|++... .-..+..+.
T Consensus        39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~  116 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE  116 (260)
T ss_pred             cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc
Confidence            33445566666666655522  33445666677777666  44333333334456677777777666421 112234445


Q ss_pred             CccccccCcCcccc
Q 038699          118 GLQDLQDLSYNSLT  131 (237)
Q Consensus       118 ~L~~L~~l~~n~~~  131 (237)
                      +|..| ++.+|..+
T Consensus       117 nL~~L-dl~n~~~~  129 (260)
T KOG2739|consen  117 NLKSL-DLFNCSVT  129 (260)
T ss_pred             chhhh-hcccCCcc
Confidence            55555 66665544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.43  E-value=8.5e-06  Score=63.65  Aligned_cols=100  Identities=23%  Similarity=0.224  Sum_probs=64.9

Q ss_pred             CCCCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccC-hhhcCCCCCCe
Q 038699           68 LLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIP-AQLGKLTRLQS  146 (237)
Q Consensus        68 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~-~~~~~~~~L~~  146 (237)
                      +.+.+.|++.++.+.++  .....++.|+.|.|+-|.|+..  ..+..+++|++| +|+.|.|.+... ..+.++++|+.
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkEl-YLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKEL-YLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHH-HHHhcccccHHHHHHHhcCchhhh
Confidence            44566677777777644  3456777777777777777633  346677777777 788777764322 34667788888


Q ss_pred             EeCcCCcCcCccC-----ccccCCCCCCEEE
Q 038699          147 LNLSHNNLSGEIP-----ASLSSMLSLVAVN  172 (237)
Q Consensus       147 L~l~~n~l~~~~~-----~~~~~~~~L~~L~  172 (237)
                      |+|..|.-.+.-+     ..+..+|+|++||
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            8887775443222     2344567777776

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.25  E-value=9.4e-05  Score=57.21  Aligned_cols=107  Identities=21%  Similarity=0.211  Sum_probs=64.7

Q ss_pred             cccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCC--cccccCCccccCccCccccccCcCcccccc-cChhhcC
Q 038699           64 EIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQN--NLIGTIPFQIGNLVGLQDLQDLSYNSLTGE-IPAQLGK  140 (237)
Q Consensus        64 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n--~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~-~~~~~~~  140 (237)
                      ....+..|+.|.+.+..++..  ..+-.+++|+.|.++.|  .+.+.++.....+++|+.+ ++++|++... .-..+..
T Consensus        38 l~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l-~ls~Nki~~lstl~pl~~  114 (260)
T KOG2739|consen   38 LTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVL-NLSGNKIKDLSTLRPLKE  114 (260)
T ss_pred             ccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEE-eecCCccccccccchhhh
Confidence            334456677777766666522  23556778888888888  5554444455556888888 8888887631 1122445


Q ss_pred             CCCCCeEeCcCCcCcCc---cCccccCCCCCCEEEc
Q 038699          141 LTRLQSLNLSHNNLSGE---IPASLSSMLSLVAVNL  173 (237)
Q Consensus       141 ~~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~L~l  173 (237)
                      +.+|..|++.+|..+..   --..|.-+++|.+||-
T Consensus       115 l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  115 LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             hcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            56677788877765531   1123455666666653

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.69  E-value=5.9e-05  Score=59.08  Aligned_cols=98  Identities=24%  Similarity=0.235  Sum_probs=63.8

Q ss_pred             CCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCccc--ccccCCCCCCE
Q 038699           20 LSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIP--NQIGELRDLRI   97 (237)
Q Consensus        20 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~--~~~~~l~~L~~   97 (237)
                      +.+++.|++-++.+.++.  ....|+.|+.|.|+-|+|+..  ..+..+++|++|+|..|.|.+ +.  ..+.++++|+.
T Consensus        18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhh
Confidence            445677777787777432  235778888888888888744  335677888888888888773 22  24567778888


Q ss_pred             EEccCCcccccCCc-----cccCccCcccc
Q 038699           98 LNLSQNNLIGTIPF-----QIGNLVGLQDL  122 (237)
Q Consensus        98 L~l~~n~~~~~~~~-----~~~~l~~L~~L  122 (237)
                      |-|..|.-.+..+.     .+..+++|++|
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKL  122 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKL  122 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhc
Confidence            87777765433221     23445566555

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=96.04  E-value=2.2e-05  Score=67.22  Aligned_cols=177  Identities=28%  Similarity=0.329  Sum_probs=102.7

Q ss_pred             EEecCCcCCCCCC----cccCCCCCCcEEEccCCcCCCcc----CccccCC-CCCCEEeccCCccccc----CcccccCC
Q 038699            2 LGLAGNSIGGKIP----AEIGSLSQLVELHLSSNQLSGEI----PAHIGNL-TELSTLSLNGNNISGQ----IPEEIGGL   68 (237)
Q Consensus         2 L~l~~n~~~~~~~----~~~~~l~~L~~L~L~~n~i~~~~----~~~~~~l-~~L~~L~l~~n~l~~~----~~~~~~~l   68 (237)
                      |+|.+|++.....    .++..+..|+.|++++|.+.+..    -..+... ..+++|.+..|.++..    +...+...
T Consensus        92 L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~  171 (478)
T KOG4308|consen   92 LSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKN  171 (478)
T ss_pred             hhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcc
Confidence            4556666664333    23445677777788877776331    1222222 4566667766766633    23444456


Q ss_pred             CCCCEEEccCCcCcC----ccccccc----CCCCCCEEEccCCccccc----CCccccCccC-ccccccCcCcccccccC
Q 038699           69 LNLDSLDLSMNRLSG----PIPNQIG----ELRDLRILNLSQNNLIGT----IPFQIGNLVG-LQDLQDLSYNSLTGEIP  135 (237)
Q Consensus        69 ~~L~~L~l~~n~i~~----~~~~~~~----~l~~L~~L~l~~n~~~~~----~~~~~~~l~~-L~~L~~l~~n~~~~~~~  135 (237)
                      ..++.++++.|.+..    .++..+.    ...++++|.+.+|.++..    ....+...+. +..+ ++..|++.+...
T Consensus       172 ~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el-~l~~n~l~d~g~  250 (478)
T KOG4308|consen  172 EHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLREL-DLASNKLGDVGV  250 (478)
T ss_pred             cchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHH-HHHhcCcchHHH
Confidence            677777777777631    1222222    466777788887776522    1223444444 5566 777777764322


Q ss_pred             ----hhhcCC-CCCCeEeCcCCcCcCc----cCccccCCCCCCEEEcCCCcCc
Q 038699          136 ----AQLGKL-TRLQSLNLSHNNLSGE----IPASLSSMLSLVAVNLSYNNLE  179 (237)
Q Consensus       136 ----~~~~~~-~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~  179 (237)
                          ..+..+ ++++.++++.|.|++.    ....+..++.++++.+++|++.
T Consensus       251 ~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  251 EKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence                223334 5678888888888753    3344556678888888888876

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.38  E-value=0.0091  Score=27.87  Aligned_cols=21  Identities=43%  Similarity=0.619  Sum_probs=14.8

Q ss_pred             CCcEEEccCCcCCCccCccccC
Q 038699           22 QLVELHLSSNQLSGEIPAHIGN   43 (237)
Q Consensus        22 ~L~~L~L~~n~i~~~~~~~~~~   43 (237)
                      +|++|++++|.++ .+|..|.+
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            4778888888888 56655554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.42  E-value=0.026  Score=24.50  Aligned_cols=13  Identities=38%  Similarity=0.521  Sum_probs=6.2

Q ss_pred             CCCEEEcCCCcCc
Q 038699          167 SLVAVNLSYNNLE  179 (237)
Q Consensus       167 ~L~~L~l~~n~l~  179 (237)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4566666666654

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.96  E-value=0.0013  Score=50.41  Aligned_cols=87  Identities=22%  Similarity=0.244  Sum_probs=62.7

Q ss_pred             cCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCC
Q 038699           17 IGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLR   96 (237)
Q Consensus        17 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~   96 (237)
                      +......+.|+++.|++. .....|+.+..+..|+++.|.+. ..|..++.+..+..+++..|... ..|..+...++++
T Consensus        38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k  114 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK  114 (326)
T ss_pred             hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence            445566777888877776 44445666677777788887777 67777777777777777777766 6677777888888


Q ss_pred             EEEccCCccc
Q 038699           97 ILNLSQNNLI  106 (237)
Q Consensus        97 ~L~l~~n~~~  106 (237)
                      +++.-.|.+.
T Consensus       115 ~~e~k~~~~~  124 (326)
T KOG0473|consen  115 KNEQKKTEFF  124 (326)
T ss_pred             hhhhccCcch
Confidence            8877777654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=92.24  E-value=0.03  Score=48.12  Aligned_cols=89  Identities=24%  Similarity=0.176  Sum_probs=53.5

Q ss_pred             cCCCCCCcEEEccCC-cCCCcc----CccccCCCCCCEEeccCCc-ccccCccccc-CCCCCCEEEccCCc-CcCc-ccc
Q 038699           17 IGSLSQLVELHLSSN-QLSGEI----PAHIGNLTELSTLSLNGNN-ISGQIPEEIG-GLLNLDSLDLSMNR-LSGP-IPN   87 (237)
Q Consensus        17 ~~~l~~L~~L~L~~n-~i~~~~----~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~-~l~~L~~L~l~~n~-i~~~-~~~   87 (237)
                      ...++.|+.|+++++ ......    ......+++|+.|+++.+. +++..-..+. .+++|+.|.+..+. +++. +..
T Consensus       210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~  289 (482)
T KOG1947|consen  210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS  289 (482)
T ss_pred             HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH
Confidence            456788888888763 111111    1223456788888888877 5533333333 26788888877666 4422 122


Q ss_pred             cccCCCCCCEEEccCCcc
Q 038699           88 QIGELRDLRILNLSQNNL  105 (237)
Q Consensus        88 ~~~~l~~L~~L~l~~n~~  105 (237)
                      ....++.|++|+++++..
T Consensus       290 i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  290 IAERCPSLRELDLSGCHG  307 (482)
T ss_pred             HHHhcCcccEEeeecCcc
Confidence            334577788888887754

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=91.69  E-value=0.0013  Score=56.53  Aligned_cols=178  Identities=24%  Similarity=0.302  Sum_probs=111.1

Q ss_pred             CcEEEccCCcCCCc----cCccccCCCCCCEEeccCCcccccCcc----cccCC-CCCCEEEccCCcCcCc----ccccc
Q 038699           23 LVELHLSSNQLSGE----IPAHIGNLTELSTLSLNGNNISGQIPE----EIGGL-LNLDSLDLSMNRLSGP----IPNQI   89 (237)
Q Consensus        23 L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l-~~L~~L~l~~n~i~~~----~~~~~   89 (237)
                      +..+.|.+|.+.+.    +..++...+.|+.|+++.|.+.+....    .+... ..+++|++..|.++..    +...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            67788888888743    345566778888899999888743222    22222 5677788888877643    33445


Q ss_pred             cCCCCCCEEEccCCcccc----cCCcccc----CccCccccccCcCccccccc----ChhhcCCCC-CCeEeCcCCcCcC
Q 038699           90 GELRDLRILNLSQNNLIG----TIPFQIG----NLVGLQDLQDLSYNSLTGEI----PAQLGKLTR-LQSLNLSHNNLSG  156 (237)
Q Consensus        90 ~~l~~L~~L~l~~n~~~~----~~~~~~~----~l~~L~~L~~l~~n~~~~~~----~~~~~~~~~-L~~L~l~~n~l~~  156 (237)
                      .....++.++++.|.+..    ..+..+.    ...++++| .+..|.++...    ...+...+. +..+++..|.+.+
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L-~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d  247 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETL-KLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD  247 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHH-hhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence            567788888888887731    1223333    36678888 88888776322    123444454 6668888888875


Q ss_pred             c----cCccccCC-CCCCEEEcCCCcCcCCCCCC-----CccCCCccchhccCCc
Q 038699          157 E----IPASLSSM-LSLVAVNLSYNNLEGPLPDG-----SVFSSSQSSAFTNNKD  201 (237)
Q Consensus       157 ~----~~~~~~~~-~~L~~L~l~~n~l~~~~~~~-----~~~~~l~~~~l~~n~~  201 (237)
                      .    ....+..+ ..+++++++.|.++..-...     ..-+.+..+.+++|+.
T Consensus       248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l  302 (478)
T KOG4308|consen  248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL  302 (478)
T ss_pred             HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence            3    23344444 67789999999987422221     1122556666666643

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=91.66  E-value=0.071  Score=45.82  Aligned_cols=110  Identities=27%  Similarity=0.181  Sum_probs=50.6

Q ss_pred             CCCCCEEeccCCccccc--CcccccCCCCCCEEEccCC-cCcCccc----ccccCCCCCCEEEccCCc-ccccCCcccc-
Q 038699           44 LTELSTLSLNGNNISGQ--IPEEIGGLLNLDSLDLSMN-RLSGPIP----NQIGELRDLRILNLSQNN-LIGTIPFQIG-  114 (237)
Q Consensus        44 l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n-~i~~~~~----~~~~~l~~L~~L~l~~n~-~~~~~~~~~~-  114 (237)
                      ++.|+.+.+..+.-...  ........+.|++|+++++ ......+    .....+++|+.++++++. +++..-..+. 
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            45666666655532211  2233345566666666652 1110111    122334566666666665 3332222222 


Q ss_pred             CccCccccccCcCcc-cccccC-hhhcCCCCCCeEeCcCCcC
Q 038699          115 NLVGLQDLQDLSYNS-LTGEIP-AQLGKLTRLQSLNLSHNNL  154 (237)
Q Consensus       115 ~l~~L~~L~~l~~n~-~~~~~~-~~~~~~~~L~~L~l~~n~l  154 (237)
                      .+++|+.| .+..+. +++..- .....++.|++|+++++..
T Consensus       267 ~c~~L~~L-~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  267 RCPNLETL-SLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hCCCcceE-ccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            14566666 555554 332222 2233455666666666543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.30  E-value=0.19  Score=24.18  Aligned_cols=14  Identities=64%  Similarity=0.736  Sum_probs=7.0

Q ss_pred             CCCcEEEccCCcCC
Q 038699           21 SQLVELHLSSNQLS   34 (237)
Q Consensus        21 ~~L~~L~L~~n~i~   34 (237)
                      ++|+.|+|.+|.+.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34455555555555

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.30  E-value=0.19  Score=24.18  Aligned_cols=14  Identities=64%  Similarity=0.736  Sum_probs=7.0

Q ss_pred             CCCcEEEccCCcCC
Q 038699           21 SQLVELHLSSNQLS   34 (237)
Q Consensus        21 ~~L~~L~L~~n~i~   34 (237)
                      ++|+.|+|.+|.+.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34455555555555

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.10  E-value=0.025  Score=42.51  Aligned_cols=82  Identities=18%  Similarity=0.165  Sum_probs=40.9

Q ss_pred             CCEEEccCCcccccCCccccCccCccccccCcCccc-ccccChhh-cCCCCCCeEeCcCC-cCcCccCccccCCCCCCEE
Q 038699           95 LRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSL-TGEIPAQL-GKLTRLQSLNLSHN-NLSGEIPASLSSMLSLVAV  171 (237)
Q Consensus        95 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~-~~~~~~~~-~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L  171 (237)
                      ++.++-++..|..+--+.+..++.++.| .+.+|.- .+..-+-+ ...++|+.|++++| +||+.....+..+++|+.|
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l-~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSL-SLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhh-eeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            4455555555544433444455555555 4444431 11000011 12356777777766 5665555556666667666


Q ss_pred             EcCCCc
Q 038699          172 NLSYNN  177 (237)
Q Consensus       172 ~l~~n~  177 (237)
                      .+.+-+
T Consensus       182 ~l~~l~  187 (221)
T KOG3864|consen  182 HLYDLP  187 (221)
T ss_pred             HhcCch
Confidence            665533

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.79  E-value=0.0083  Score=46.18  Aligned_cols=86  Identities=20%  Similarity=0.196  Sum_probs=47.8

Q ss_pred             cCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCC
Q 038699           66 GGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQ  145 (237)
Q Consensus        66 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~  145 (237)
                      ........||++.|.+. .+-..|+.++.+..|+++.|.+. ..|..+.....+..+ ++..|... ..|..+...++++
T Consensus        39 ~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~-~~~~n~~~-~~p~s~~k~~~~k  114 (326)
T KOG0473|consen   39 ASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNA-ASHKNNHS-QQPKSQKKEPHPK  114 (326)
T ss_pred             hccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHH-Hhhccchh-hCCccccccCCcc
Confidence            34445556666666554 33344555566666666666654 445555555555555 55555554 4555556666666


Q ss_pred             eEeCcCCcCc
Q 038699          146 SLNLSHNNLS  155 (237)
Q Consensus       146 ~L~l~~n~l~  155 (237)
                      .+++..|.++
T Consensus       115 ~~e~k~~~~~  124 (326)
T KOG0473|consen  115 KNEQKKTEFF  124 (326)
T ss_pred             hhhhccCcch
Confidence            6666665544

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=88.40  E-value=0.12  Score=24.40  Aligned_cols=11  Identities=55%  Similarity=0.758  Sum_probs=3.5

Q ss_pred             CCEEeccCCcc
Q 038699           47 LSTLSLNGNNI   57 (237)
Q Consensus        47 L~~L~l~~n~l   57 (237)
                      |++|++++|.+
T Consensus         4 L~~L~l~~n~i   14 (24)
T PF13516_consen    4 LETLDLSNNQI   14 (24)
T ss_dssp             -SEEE-TSSBE
T ss_pred             CCEEEccCCcC
Confidence            33333333333

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.26  E-value=0.099  Score=39.41  Aligned_cols=77  Identities=18%  Similarity=0.153  Sum_probs=37.1

Q ss_pred             CCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCccc-ccc-cCCCCCCEEEccCCc-ccccCCccccCccCcccc
Q 038699           46 ELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIP-NQI-GELRDLRILNLSQNN-LIGTIPFQIGNLVGLQDL  122 (237)
Q Consensus        46 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~-~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L  122 (237)
                      .++.++-++..|....-+.+..+++++.|.+.++.-.+... +.+ .-.++|+.|++++|. |++.--..+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            34555555555554444555556666666665554321100 001 134566666666553 443333344455555554

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=83.53  E-value=1.2  Score=21.67  Aligned_cols=14  Identities=29%  Similarity=0.449  Sum_probs=11.5

Q ss_pred             CCCCEEEcCCCcCc
Q 038699          166 LSLVAVNLSYNNLE  179 (237)
Q Consensus       166 ~~L~~L~l~~n~l~  179 (237)
                      .+|+.|++++|+|+
T Consensus         2 ~~L~~L~L~~NkI~   15 (26)
T smart00365        2 TNLEELDLSQNKIK   15 (26)
T ss_pred             CccCEEECCCCccc
Confidence            57888888888886

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=82.39  E-value=1.3  Score=21.83  Aligned_cols=14  Identities=43%  Similarity=0.442  Sum_probs=10.9

Q ss_pred             CCCCEEEcCCCcCc
Q 038699          166 LSLVAVNLSYNNLE  179 (237)
Q Consensus       166 ~~L~~L~l~~n~l~  179 (237)
                      ++|++|+|++|.+.
T Consensus         2 ~~L~~LdL~~N~i~   15 (28)
T smart00368        2 PSLRELDLSNNKLG   15 (28)
T ss_pred             CccCEEECCCCCCC
Confidence            46788888888875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	237
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		5e-18
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		6e-18
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		9e-11
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		6e-11

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 92/250 (36%), Gaps = 71/250 (28%)
Query: 1   MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHI------------------- 41
           +L L+ NS  G IPAE+G    L+ L L++N  +G IPA +                   
Sbjct: 518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY 577
Query: 42  -------------GNLTELSTL---------SLNGNNIS-----GQIPEEIGGXXXXXXX 74
                        GNL E   +         + N  NI+     G               
Sbjct: 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637
Query: 75  XXXXXXXXGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEI 134
                   G IP +IG +  L ILNL  N++ G+IP ++G+L GL  L DLS N L G I
Sbjct: 638 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL-DLSSNKLDGRI 696
Query: 135 PAQLGKLTRLQXXXXXXXXXXGEIPXXXXXXXXXXXXXXXYNNLEGPLPDGXXXXXXXXX 194
           P  +  LT L            EI                 NNL GP+P+          
Sbjct: 697 PQAMSALTMLT-----------EIDLSN-------------NNLSGPIPEMGQFETFPPA 732
Query: 195 AFTNNKDLCG 204
            F NN  LCG
Sbjct: 733 KFLNNPGLCG 742

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 87.4 bits (215), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 80/158 (50%), Gaps = 1/158 (0%)
Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L L  N   GKIP  + + S+LV LHLS N LSG IP+ +G+L++L  L L  N + G+I
Sbjct: 396 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 455
Query: 62  PEEIGGXXXXXXXXXXXXXXXGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
           P+E+                 G IP+ +    +L  ++LS N L G IP  IG L  L  
Sbjct: 456 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 515
Query: 122 LQDLSYNSLTGEIPAQLGKLTRLQXXXXXXXXXXGEIP 159
           L+ LS NS +G IPA+LG    L           G IP
Sbjct: 516 LK-LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 552

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 63.5 bits (153), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 99/270 (36%), Gaps = 73/270 (27%)
Query: 1   MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHI------------------- 41
           +L L+ NS  G IPAE+G    L+ L L++N  +G IPA +                   
Sbjct: 515 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY 574
Query: 42  -------------GNLTELSTL---------SLNGNNIS-----GQIPEEIGGXXXXXXX 74
                        GNL E   +         + N  NI+     G               
Sbjct: 575 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 634
Query: 75  XXXXXXXXGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEI 134
                   G IP +IG +  L ILNL  N++ G+IP ++G+L GL  L DLS N L G I
Sbjct: 635 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL-DLSSNKLDGRI 693
Query: 135 PAQLGKLTRLQXXXXXXXXXXGEIPXXXXXXXXXXXXXXXYNNLEGPLPDGXXXXXXXXX 194
           P  +  LT L            EI                 NNL GP+P+          
Sbjct: 694 PQAMSALTMLT-----------EIDLSN-------------NNLSGPIPEMGQFETFPPA 729
Query: 195 AFTNNKDLCGKVQGLRPCNALSTDKGGGHK 224
            F NN  LCG    L  C+  + D    H+
Sbjct: 730 KFLNNPGLCG--YPLPRCDPSNADGYAHHQ 757

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 83/205 (40%), Gaps = 4/205 (1%)
Query: 1   MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ 60
            L +   ++ G IP  +  +  LV L  S N LSG +P  I +L  L  ++ +GN ISG 
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164
Query: 61  IPEEIGGXXXXXXXXXXXX-XXXGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGL 119
           IP+  G                 G IP     L +L  ++LS+N L G      G+    
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNT 223
Query: 120 QDLQDLSYNSLTGEIPAQLGKLTRLQXXXXXXXXXXGEIPXXXXXXXXXXXXXXXYNNLE 179
           Q +  L+ NSL  ++  ++G    L           G +P               +NNL 
Sbjct: 224 QKIH-LAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
Query: 180 GPLPDGXXXXXXXXXAFTNNKDLCG 204
           G +P G         A+ NNK LCG
Sbjct: 282 GEIPQGGNLQRFDVSAYANNKCLCG 306

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	237
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-71
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-61
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-55
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-47
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-55
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-54
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-53
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-52
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-52
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-50
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-48
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-48
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-47
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-46
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-42
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-36
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-29
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-22
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-39
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-38
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-32
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-38
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-36
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-34
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-34
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-33
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-33
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-32
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-29
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-36
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-35
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-32
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-32
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-31
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-22
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-35
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-35
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-34
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-31
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-31
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-30
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-34
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-33
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-33
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-28
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-32
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-32
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-30
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-28
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-27
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-30
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-29
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-29
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-26
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-29
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-29
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-28
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-27
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-22
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-18
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-25
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-24
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-24
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-23
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-23
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-20
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-22
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-22
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-22
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-22
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-21
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-21
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-20
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-20
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-22
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-21
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-21
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-19
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-19
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-17
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-19
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-19
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-17
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-17
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-16
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-16
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-15
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-12
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	9e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	5e-05

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  220 bits (562), Expect = 1e-71
 Identities = 73/213 (34%), Positives = 110/213 (51%), Gaps = 6/213 (2%)

Query: 1   MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ 60
            L +   ++ G IP  +  +  LV L  S N LSG +P  I +L  L  ++ +GN ISG 
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

Query: 61  IPEEIGGLLNLD-SLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGL 119
           IP+  G    L  S+ +S NRL+G IP     L +L  ++LS+N L G      G+    
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 120 QDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 179
           Q +  L+ NSL  ++  ++G    L  L+L +N + G +P  L+ +  L ++N+S+NNL 
Sbjct: 224 QKI-HLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

Query: 180 GPLPDGSVFSSSQSSAFTNNKDLCGKVQGLRPC 212
           G +P G        SA+ NNK LCG    L  C
Sbjct: 282 GEIPQGGNLQRFDVSAYANNKCLCGS--PLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  194 bits (495), Expect = 2e-61
 Identities = 60/185 (32%), Positives = 90/185 (48%), Gaps = 4/185 (2%)

Query: 2   LGLAGNSIGG--KIPAEIGSLSQLVELHLSS-NQLSGEIPAHIGNLTELSTLSLNGNNIS 58
           L L+G ++     IP+ + +L  L  L++   N L G IP  I  LT+L  L +   N+S
Sbjct: 55  LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114

Query: 59  GQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVG 118
           G IP+ +  +  L +LD S N LSG +P  I  L +L  +    N + G IP   G+   
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174

Query: 119 LQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 178
           L     +S N LTG+IP     L  L  ++LS N L G+      S  +   ++L+ N+L
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233

Query: 179 EGPLP 183
              L 
Sbjct: 234 AFDLG 238

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  177 bits (452), Expect = 4e-55
 Identities = 57/182 (31%), Positives = 91/182 (50%), Gaps = 6/182 (3%)

Query: 7   NSIGGKIPAEIGSLSQLVELHLSSNQLSGE--IPAHIGNLTELSTLSL-NGNNISGQIPE 63
            +  G +        ++  L LS   L     IP+ + NL  L+ L +   NN+ G IP 
Sbjct: 36  RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP 95

Query: 64  EIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQ 123
            I  L  L  L ++   +SG IP+ + +++ L  L+ S N L GT+P  I +L  L  + 
Sbjct: 96  AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI- 154

Query: 124 DLSYNSLTGEIPAQLGKLTRL-QSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPL 182
               N ++G IP   G  ++L  S+ +S N L+G+IP + ++ L+L  V+LS N LEG  
Sbjct: 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-LNLAFVDLSRNMLEGDA 213

Query: 183 PD 184
             
Sbjct: 214 SV 215

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  158 bits (401), Expect = 2e-47
 Identities = 51/181 (28%), Positives = 80/181 (44%), Gaps = 9/181 (4%)

Query: 12  KIPAEIGSLSQLV----ELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ--IPEEI 65
           +I  ++G+ + L          +    G +         ++ L L+G N+     IP  +
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 66  GGLLNLDSLDLS-MNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQD 124
             L  L+ L +  +N L GPIP  I +L  L  L ++  N+ G IP  +  +  L  L D
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL-D 131

Query: 125 LSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAV-NLSYNNLEGPLP 183
            SYN+L+G +P  +  L  L  +    N +SG IP S  S   L     +S N L G +P
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191

Query: 184 D 184
            
Sbjct: 192 P 192

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  188 bits (479), Expect = 1e-55
 Identities = 71/186 (38%), Positives = 102/186 (54%), Gaps = 3/186 (1%)

Query: 2   LGLAGNSIGGKIPAEIG--SLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISG 59
           L L+ N+  G I   +     + L EL+L +N  +G+IP  + N +EL +L L+ N +SG
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432

Query: 60  QIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGL 119
            IP  +G L  L  L L +N L G IP ++  ++ L  L L  N+L G IP  + N   L
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492

Query: 120 QDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 179
             +  LS N LTGEIP  +G+L  L  L LS+N+ SG IPA L    SL+ ++L+ N   
Sbjct: 493 NWI-SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551

Query: 180 GPLPDG 185
           G +P  
Sbjct: 552 GTIPAA 557

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  184 bits (469), Expect = 5e-54
 Identities = 72/186 (38%), Positives = 101/186 (54%), Gaps = 4/186 (2%)

Query: 2   LGLAGNSIGGKIPAEIGSLS-QLVELHLSSNQLSGEIPAHIGN--LTELSTLSLNGNNIS 58
           L L+ N   G++P  + +LS  L+ L LSSN  SG I  ++       L  L L  N  +
Sbjct: 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407

Query: 59  GQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVG 118
           G+IP  +     L SL LS N LSG IP+ +G L  LR L L  N L G IP ++  +  
Sbjct: 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 467

Query: 119 LQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 178
           L+ L  L +N LTGEIP+ L   T L  ++LS+N L+GEIP  +  + +L  + LS N+ 
Sbjct: 468 LETL-ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526

Query: 179 EGPLPD 184
            G +P 
Sbjct: 527 SGNIPA 532

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  181 bits (461), Expect = 6e-53
 Identities = 64/226 (28%), Positives = 97/226 (42%), Gaps = 29/226 (12%)

Query: 1   MLGLAGNSIGGKIPAEIGSLSQLVELHLSSN--QLSGEIPAHIGNLTELSTLSLNGNNIS 58
              +A N I GK    I +     E H + N  +  G     +  L+  +  ++      
Sbjct: 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621

Query: 59  GQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVG 118
           G          ++  LD+S N LSG IP +IG +  L ILNL  N++             
Sbjct: 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI------------- 668

Query: 119 LQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 178
                       +G IP ++G L  L  L+LS N L G IP ++S++  L  ++LS NNL
Sbjct: 669 ------------SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716

Query: 179 EGPLPDGSVFSSSQSSAFTNNKDLCGKVQGLRPCNALSTDKGGGHK 224
            GP+P+   F +   + F NN  LCG    L  C+  + D    H+
Sbjct: 717 SGPIPEMGQFETFPPAKFLNNPGLCGYP--LPRCDPSNADGYAHHQ 760

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  180 bits (458), Expect = 1e-52
 Identities = 73/188 (38%), Positives = 105/188 (55%), Gaps = 5/188 (2%)

Query: 1   MLGLAGNSIGGKIPAE-IGSLSQLVELHLSSNQLSGEIPAHIGNLT-ELSTLSLNGNNIS 58
            L L+ N+  G++P + +  +  L  L LS N+ SGE+P  + NL+  L TL L+ NN S
Sbjct: 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381

Query: 59  GQIPEEIGG--LLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNL 116
           G I   +       L  L L  N  +G IP  +    +L  L+LS N L GTIP  +G+L
Sbjct: 382 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 441

Query: 117 VGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYN 176
             L+DL  L  N L GEIP +L  +  L++L L  N+L+GEIP+ LS+  +L  ++LS N
Sbjct: 442 SKLRDL-KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 500

Query: 177 NLEGPLPD 184
            L G +P 
Sbjct: 501 RLTGEIPK 508

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  178 bits (454), Expect = 5e-52
 Identities = 71/199 (35%), Positives = 104/199 (52%), Gaps = 1/199 (0%)

Query: 1   MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ 60
            L L  N   GKIP  + + S+LV LHLS N LSG IP+ +G+L++L  L L  N + G+
Sbjct: 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 457

Query: 61  IPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQ 120
           IP+E+  +  L++L L  N L+G IP+ +    +L  ++LS N L G IP  IG L  L 
Sbjct: 458 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517

Query: 121 DLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEG 180
            L  LS NS +G IPA+LG    L  L+L+ N  +G IPA++      +A N        
Sbjct: 518 IL-KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV 576

Query: 181 PLPDGSVFSSSQSSAFTNN 199
            + +  +      +     
Sbjct: 577 YIKNDGMKKECHGAGNLLE 595

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  173 bits (440), Expect = 4e-50
 Identities = 68/187 (36%), Positives = 103/187 (55%), Gaps = 7/187 (3%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L ++ N+    IP  +G  S L  L +S N+LSG+    I   TEL  L+++ N   G I
Sbjct: 205 LDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 263

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIPNQI-GELRDLRILNLSQNNLIGTIPFQIGNLVGLQ 120
           P     L +L  L L+ N+ +G IP+ + G    L  L+LS N+  G +P   G+   L+
Sbjct: 264 PPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 321

Query: 121 DLQDLSYNSLTGEIPAQ-LGKLTRLQSLNLSHNNLSGEIPASLSSML-SLVAVNLSYNNL 178
            L  LS N+ +GE+P   L K+  L+ L+LS N  SGE+P SL+++  SL+ ++LS NN 
Sbjct: 322 SL-ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 380

Query: 179 EGPLPDG 185
            GP+   
Sbjct: 381 SGPILPN 387

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  169 bits (431), Expect = 1e-48
 Identities = 65/206 (31%), Positives = 97/206 (47%), Gaps = 23/206 (11%)

Query: 1   MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ 60
            L L+ N + G IP+ +GSLS+L +L L  N L GEIP  +  +  L TL L+ N+++G+
Sbjct: 422 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE 481

Query: 61  IPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQ 120
           IP  +    NL+ + LS NRL+G IP  IG L +L IL LS N+  G IP ++G+   L 
Sbjct: 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI 541

Query: 121 DLQDLSYNSLTGEIPAQLGKLTRLQSLNL----------------------SHNNLSGEI 158
            L DL+ N   G IPA + K +   + N                       +     G  
Sbjct: 542 WL-DLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR 600

Query: 159 PASLSSMLSLVAVNLSYNNLEGPLPD 184
              L+ + +    N++     G    
Sbjct: 601 SEQLNRLSTRNPCNITSRVYGGHTSP 626

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  169 bits (430), Expect = 1e-48
 Identities = 66/192 (34%), Positives = 92/192 (47%), Gaps = 10/192 (5%)

Query: 2   LGLAGNSIGGKIPAEI---GSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNIS 58
           L L+ NSI G             +L  L +S N++SG++   +     L  L ++ NN S
Sbjct: 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFS 213

Query: 59  GQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVG 118
             IP  +G    L  LD+S N+LSG     I    +L++LN+S N  +G IP     L  
Sbjct: 214 TGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP--PLPLKS 270

Query: 119 LQDLQDLSYNSLTGEIPAQL-GKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNN 177
           LQ L  L+ N  TGEIP  L G    L  L+LS N+  G +P    S   L ++ LS NN
Sbjct: 271 LQYL-SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329

Query: 178 LEGPLPDGSVFS 189
             G LP  ++  
Sbjct: 330 FSGELPMDTLLK 341

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  164 bits (418), Expect = 5e-47
 Identities = 63/197 (31%), Positives = 92/197 (46%), Gaps = 12/197 (6%)

Query: 2   LGLAGNSIGGKIPA--EIGSLSQLVELHLSSNQLSGEIPAHIG-NLTELSTLSLNGNNIS 58
           L L+ NS+ G +     +GS S L  L++SSN L        G  L  L  L L+ N+IS
Sbjct: 105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164

Query: 59  GQIPEEI---GGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGN 115
           G          G   L  L +S N++SG +   +    +L  L++S NN    IPF +G+
Sbjct: 165 GANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGD 221

Query: 116 LVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSY 175
              LQ L D+S N L+G+    +   T L+ LN+S N   G IP       SL  ++L+ 
Sbjct: 222 CSALQHL-DISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLK--SLQYLSLAE 278

Query: 176 NNLEGPLPDGSVFSSSQ 192
           N   G +PD    +   
Sbjct: 279 NKFTGEIPDFLSGACDT 295

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  162 bits (412), Expect = 4e-46
 Identities = 57/191 (29%), Positives = 92/191 (48%), Gaps = 11/191 (5%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPA--HIGNLTELSTLSLNGNNISG 59
           L L+ + I G +       + L  L LS N LSG +     +G+ + L  L+++ N +  
Sbjct: 82  LFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDF 140

Query: 60  QIPEEIGGLL-NLDSLDLSMNRLSGPIPNQI---GELRDLRILNLSQNNLIGTIPFQIGN 115
                 G  L +L+ LDLS N +SG             +L+ L +S N + G +   +  
Sbjct: 141 PGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSR 198

Query: 116 LVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSY 175
            V L+ L D+S N+ +  IP  LG  + LQ L++S N LSG+   ++S+   L  +N+S 
Sbjct: 199 CVNLEFL-DVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256

Query: 176 NNLEGPLPDGS 186
           N   GP+P   
Sbjct: 257 NQFVGPIPPLP 267

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  150 bits (382), Expect = 4e-42
 Identities = 48/183 (26%), Positives = 87/183 (47%), Gaps = 9/183 (4%)

Query: 7   NSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPE--E 64
           N     + + + SL+ L  L LS++ ++G +         L++L L+ N++SG +     
Sbjct: 63  NVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTTLTS 121

Query: 65  IGGLLNLDSLDLSMNRLSGPIPNQIG-ELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQ 123
           +G    L  L++S N L  P     G +L  L +L+LS N++ G          G  +L+
Sbjct: 122 LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELK 181

Query: 124 --DLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGP 181
              +S N ++G++   + +   L+ L++S NN S  IP  L    +L  +++S N L G 
Sbjct: 182 HLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGD 238

Query: 182 LPD 184
              
Sbjct: 239 FSR 241

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  135 bits (341), Expect = 2e-36
 Identities = 51/174 (29%), Positives = 85/174 (48%), Gaps = 13/174 (7%)

Query: 19  SLSQLVELHLSSNQLS---GEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLD 75
              ++  + LSS  L+     + + + +LT L +L L+ ++I+G +        +L SLD
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLD 106

Query: 76  LSMNRLSGPIP--NQIGELRDLRILNLSQNNLIGTIPFQIG-NLVGLQDLQDLSYNSLTG 132
           LS N LSGP+     +G    L+ LN+S N L        G  L  L+ L DLS NS++G
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL-DLSANSISG 165

Query: 133 EIPAQL---GKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLP 183
                         L+ L +S N +SG++   +S  ++L  +++S NN    +P
Sbjct: 166 ANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP 217

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  115 bits (290), Expect = 1e-29
 Identities = 38/151 (25%), Positives = 65/151 (43%), Gaps = 8/151 (5%)

Query: 42  GNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLS 101
             +T +   S   N     +   +  L  L+SL LS + ++G +         L  L+LS
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLS 108

Query: 102 QNNLIGTIP--FQIGNLVGLQDLQDLSYNSLTGEIPAQLG-KLTRLQSLNLSHNNLSGEI 158
           +N+L G +     +G+  GL+ L ++S N+L        G KL  L+ L+LS N++SG  
Sbjct: 109 RNSLSGPVTTLTSLGSCSGLKFL-NVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGAN 167

Query: 159 PASL---SSMLSLVAVNLSYNNLEGPLPDGS 186
                       L  + +S N + G +    
Sbjct: 168 VVGWVLSDGCGELKHLAISGNKISGDVDVSR 198

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 94.2 bits (235), Expect = 2e-22
 Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 8/128 (6%)

Query: 73  SLDLSMNRLS---GPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNS 129
           S+DLS   L+     + + +  L  L  L LS +++ G++         L  L DLS NS
Sbjct: 54  SIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSL-DLSRNS 111

Query: 130 LTGEIPA--QLGKLTRLQSLNLSHNNLSGEIPASLSSML-SLVAVNLSYNNLEGPLPDGS 186
           L+G +     LG  + L+ LN+S N L      S    L SL  ++LS N++ G    G 
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW 171

Query: 187 VFSSSQSS 194
           V S     
Sbjct: 172 VLSDGCGE 179

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 76.1 bits (188), Expect = 3e-16
 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 4/105 (3%)

Query: 90  GELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNL 149
            ++  + + +   N     +   + +L GL+ L  LS + + G +         L SL+L
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESL-FLSNSHINGSVS-GFKCSASLTSLDL 107

Query: 150 SHNNLSGEIPA--SLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQ 192
           S N+LSG +    SL S   L  +N+S N L+ P         + 
Sbjct: 108 SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS 152

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  138 bits (351), Expect = 5e-38
 Identities = 48/195 (24%), Positives = 72/195 (36%), Gaps = 3/195 (1%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L L  N +     A     SQL  L +  N +S   P     L  L  L+L  N +S   
Sbjct: 30  LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 89

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
            +      NL  L L  N +     N   + ++L  L+LS N L  T       L  LQ+
Sbjct: 90  DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQE 149

Query: 122 LQDLSYNSLTGEIPA--QLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 179
           L  LS N +         +   + L+ L LS N +    P    ++  L  + L+   L 
Sbjct: 150 L-LLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG 208

Query: 180 GPLPDGSVFSSSQSS 194
             L +      + +S
Sbjct: 209 PSLTEKLCLELANTS 223

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  133 bits (336), Expect = 6e-36
 Identities = 48/194 (24%), Positives = 75/194 (38%), Gaps = 12/194 (6%)

Query: 2   LGLAGNSIGGKIPA-EIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISG- 59
           L L  N IG ++   E   L  + E++LS N+           +  L  L L    +   
Sbjct: 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469

Query: 60  -QIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNL--------IGTIP 110
              P     L NL  LDLS N ++    + +  L  L IL+L  NNL         G   
Sbjct: 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI 529

Query: 111 FQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVA 170
           + +  L  L  L +L  N            L  L+ ++L  NNL+    +  ++ +SL +
Sbjct: 530 YFLKGLSHLHIL-NLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS 588

Query: 171 VNLSYNNLEGPLPD 184
           +NL  N +      
Sbjct: 589 LNLQKNLITSVEKK 602

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  129 bits (326), Expect = 2e-34
 Identities = 48/206 (23%), Positives = 78/206 (37%), Gaps = 13/206 (6%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIG---NLTELSTLSLNGNNIS 58
           L L+ N I    P    ++ +L  L L++ QL   +   +      T +  LSL+ + +S
Sbjct: 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS 235

Query: 59  GQIPEEIGGL--LNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNL 116
                   GL   NL  LDLS N L+    +    L  L    L  NN+       +  L
Sbjct: 236 TTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL 295

Query: 117 VGLQDL--------QDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSL 168
             ++ L        Q +S  SL          L  L+ LN+  N++ G      + +++L
Sbjct: 296 FNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINL 355

Query: 169 VAVNLSYNNLEGPLPDGSVFSSSQSS 194
             ++LS +           F S   S
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSLAHS 381

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  128 bits (323), Expect = 4e-34
 Identities = 48/216 (22%), Positives = 78/216 (36%), Gaps = 12/216 (5%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSG--EIPAHIGNLTELSTLSLNGNNISG 59
           + L+ N            +  L  L L    L      P+    L  L+ L L+ NNI+ 
Sbjct: 435 IYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494

Query: 60  QIPEEIGGLLNLDSLDLSMNRLS--------GPIPNQIGELRDLRILNLSQNNLIGTIPF 111
              + + GL  L+ LDL  N L+        G     +  L  L ILNL  N        
Sbjct: 495 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE 554

Query: 112 QIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSML-SLVA 170
              +L  L+ + DL  N+L     +       L+SLNL  N ++            +L  
Sbjct: 555 VFKDLFELKII-DLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTE 613

Query: 171 VNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCGKV 206
           +++ +N  +      + F +  +   TN  +L    
Sbjct: 614 LDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHY 649

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  126 bits (318), Expect = 2e-33
 Identities = 49/231 (21%), Positives = 78/231 (33%), Gaps = 31/231 (13%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L L  NSI             L+ L LS N LS         L  L  L L+ N I    
Sbjct: 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK 161

Query: 62  PEEIG--GLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGL 119
            EE+      +L  L+LS N++    P     +  L  L L+   L  ++  ++   +  
Sbjct: 162 SEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELAN 221

Query: 120 QDLQ----------------------------DLSYNSLTGEIPAQLGKLTRLQSLNLSH 151
             ++                            DLSYN+L          L +L+   L +
Sbjct: 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281

Query: 152 NNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDL 202
           NN+      SL  + ++  +NL  +  +  +   S        +F   K L
Sbjct: 282 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLAS-LPKIDDFSFQWLKCL 331

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  126 bits (318), Expect = 2e-33
 Identities = 46/174 (26%), Positives = 72/174 (41%), Gaps = 5/174 (2%)

Query: 13  IPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLD 72
           +P ++   + +  L+L+ NQL     A+    ++L++L +  N IS   PE    L  L 
Sbjct: 19  VPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK 76

Query: 73  SLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTG 132
            L+L  N LS           +L  L+L  N++             L  L DLS+N L+ 
Sbjct: 77  VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL-DLSHNGLSS 135

Query: 133 EIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSM--LSLVAVNLSYNNLEGPLPD 184
                  +L  LQ L LS+N +       L      SL  + LS N ++   P 
Sbjct: 136 TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG 189

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  121 bits (306), Expect = 8e-32
 Identities = 37/197 (18%), Positives = 72/197 (36%), Gaps = 13/197 (6%)

Query: 1   MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGN----- 55
           ML L+ N++          L QL    L  N +       +  L  +  L+L  +     
Sbjct: 252 MLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS 311

Query: 56  ----NISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNL-IGTIP 110
               ++          L  L+ L++  N + G   N    L +L+ L+LS +   + T+ 
Sbjct: 312 ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLT 371

Query: 111 FQIGNLVGLQDLQ--DLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPAS-LSSMLS 167
            +    +    L   +L+ N ++         L  L+ L+L  N +  E+       + +
Sbjct: 372 NETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLEN 431

Query: 168 LVAVNLSYNNLEGPLPD 184
           +  + LSYN       +
Sbjct: 432 IFEIYLSYNKYLQLTRN 448

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  113 bits (284), Expect = 6e-29
 Identities = 48/201 (23%), Positives = 74/201 (36%), Gaps = 18/201 (8%)

Query: 2   LGLAGNSIGGKIPAEIGSL--SQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISG 59
           L L+ + +          L  + L  L LS N L+         L +L    L  NNI  
Sbjct: 227 LSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH 286

Query: 60  QIPEEIGGLLNLDSLDL---------SMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIP 110
                + GL N+  L+L         S+  L          L+ L  LN+  N++ G   
Sbjct: 287 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS 346

Query: 111 FQIGNLVGLQDLQDLSYN-----SLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSM 165
                L+ L+ L  LS +     +LT E    L   + L  LNL+ N +S     + S +
Sbjct: 347 NMFTGLINLKYL-SLSNSFTSLRTLTNETFVSLA-HSPLHILNLTKNKISKIESDAFSWL 404

Query: 166 LSLVAVNLSYNNLEGPLPDGS 186
             L  ++L  N +   L    
Sbjct: 405 GHLEVLDLGLNEIGQELTGQE 425

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 91.6 bits (228), Expect = 2e-21
 Identities = 35/185 (18%), Positives = 59/185 (31%), Gaps = 13/185 (7%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLS--------GEIPAHIGNLTELSTLSLN 53
           L L+ N+I       +  L +L  L L  N L+        G     +  L+ L  L+L 
Sbjct: 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE 544

Query: 54  GNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQI 113
            N       E    L  L  +DL +N L+    +       L+ LNL +N +        
Sbjct: 545 SNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 604

Query: 114 GNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEI----PASLSSMLSLV 169
           G         D+ +N       +    +  +   + +   LS       P        + 
Sbjct: 605 GPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGF-PVR 663

Query: 170 AVNLS 174
             + S
Sbjct: 664 LFDTS 668

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 82.7 bits (205), Expect = 2e-18
 Identities = 27/115 (23%), Positives = 53/115 (46%), Gaps = 4/115 (3%)

Query: 70  NLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNS 129
           + +  D S  +L+  +P+ +    ++ +LNL+ N L             L  L D+ +N+
Sbjct: 5   SHEVADCSHLKLTQ-VPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSL-DVGFNT 60

Query: 130 LTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPD 184
           ++   P    KL  L+ LNL HN LS     + +   +L  ++L  N+++    +
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN 115

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 1/106 (0%)

Query: 1   MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ 60
           +L L  N            L +L  + L  N L+    +   N   L +L+L  N I+  
Sbjct: 540 ILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV 599

Query: 61  IPEEIGGLL-NLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNL 105
             +  G    NL  LD+  N       +    +  +   + +   L
Sbjct: 600 EKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPEL 645

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  132 bits (335), Expect = 7e-36
 Identities = 45/187 (24%), Positives = 68/187 (36%), Gaps = 6/187 (3%)

Query: 2   LGLAGNSIG--GKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISG 59
           L L+ N +   G         + L  L LS N +   + ++   L +L  L    +N+  
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQ 410

Query: 60  QIPEEI-GGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTI-PFQIGNLV 117
                +   L NL  LD+S              L  L +L ++ N+      P     L 
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470

Query: 118 GLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNN 177
            L  L DLS   L    P     L+ LQ LN+SHNN           + SL  ++ S N+
Sbjct: 471 NLTFL-DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 529

Query: 178 LEGPLPD 184
           +      
Sbjct: 530 IMTSKKQ 536

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  129 bits (326), Expect = 9e-35
 Identities = 48/196 (24%), Positives = 76/196 (38%), Gaps = 7/196 (3%)

Query: 4   LAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPE 63
           L+ N +         S  +L  L LS  ++         +L+ LSTL L GN I      
Sbjct: 35  LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94

Query: 64  EIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGT-IPFQIGNLVGLQDL 122
              GL +L  L      L+      IG L+ L+ LN++ N +    +P    NL  L+ L
Sbjct: 95  AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154

Query: 123 QDLSYNSLTGEIPAQLGKLTRLQ----SLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 178
            DLS N +       L  L ++     SL+LS N ++   P +    + L  + L  N  
Sbjct: 155 -DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFD 212

Query: 179 EGPLPDGSVFSSSQSS 194
              +    +   +   
Sbjct: 213 SLNVMKTCIQGLAGLE 228

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  122 bits (308), Expect = 3e-32
 Identities = 47/208 (22%), Positives = 70/208 (33%), Gaps = 10/208 (4%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L L+   I         SLS L  L L+ N +          L+ L  L     N++   
Sbjct: 57  LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116

Query: 62  PEEIGGLLNLDSLDLSMNRL-SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQ 120
              IG L  L  L+++ N + S  +P     L +L  L+LS N +       +  L  + 
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176

Query: 121 DLQ---DLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLS-LVAVNLSYN 176
            L    DLS N +   I     K  RL  L L +N  S  +  +    L+ L    L   
Sbjct: 177 LLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235

Query: 177 NLEG----PLPDGSVFSSSQSSAFTNNK 200
                      D S      +      +
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFR 263

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  121 bits (306), Expect = 6e-32
 Identities = 43/178 (24%), Positives = 72/178 (40%), Gaps = 8/178 (4%)

Query: 12  KIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNL 71
           KIP  +        L LS N L         +  EL  L L+   I          L +L
Sbjct: 21  KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 72  DSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLT 131
            +L L+ N +          L  L+ L   + NL     F IG+L  L++L ++++N + 
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL-NVAHNLIQ 137

Query: 132 G-EIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSL----VAVNLSYNNLEGPLPD 184
             ++P     LT L+ L+LS N +       L  +  +    ++++LS N +    P 
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  120 bits (303), Expect = 1e-31
 Identities = 45/187 (24%), Positives = 69/187 (36%), Gaps = 6/187 (3%)

Query: 2   LGLAGNSIGGKIPAEI-GSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ 60
           L    +++       +  SL  L+ L +S              L+ L  L + GN+    
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460

Query: 61  I-PEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGL 119
             P+    L NL  LDLS  +L    P     L  L++LN+S NN      F    L  L
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 520

Query: 120 QDLQDLSYNSLTGEIPAQLGKL-TRLQSLNLSHNNLSGEIPAS--LSSMLSLVAVNLSYN 176
           Q L D S N +      +L    + L  LNL+ N+ +        L  +     + +   
Sbjct: 521 QVL-DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVE 579

Query: 177 NLEGPLP 183
            +E   P
Sbjct: 580 RMECATP 586

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 93.2 bits (232), Expect = 5e-22
 Identities = 38/153 (24%), Positives = 62/153 (40%), Gaps = 6/153 (3%)

Query: 2   LGLAGNSIGGKIPAEI-GSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ 60
           L +AGNS       +I   L  L  L LS  QL    P    +L+ L  L+++ NN    
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 509

Query: 61  IPEEIGGLLNLDSLDLSMNRLSGPIPNQIGEL-RDLRILNLSQNNLIGTIPFQ--IGNLV 117
                  L +L  LD S+N +      ++      L  LNL+QN+   T   Q  +  + 
Sbjct: 510 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIK 569

Query: 118 GLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLS 150
             + L  +    +    P+   +   + SLN++
Sbjct: 570 DQRQL-LVEVERMECATPSDK-QGMPVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 83.9 bits (208), Expect = 7e-19
 Identities = 37/216 (17%), Positives = 61/216 (28%), Gaps = 43/216 (19%)

Query: 2   LGLAGNSI-GGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELS----TLSLNGNN 56
           L +A N I   K+P    +L+ L  L LSSN++       +  L ++     +L L+ N 
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 57  ISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQI--------------------------- 89
           ++  I       + L  L L  N  S  +                               
Sbjct: 189 MNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247

Query: 90  -GELRDLRILNLSQNNL------IGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLT 142
              L  L  L + +  L      +  I      L  +     L   ++            
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF-SLVSVTIERVKD--FSYNF 304

Query: 143 RLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 178
             Q L L +          L S+  L   +    N 
Sbjct: 305 GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA 340

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 81.2 bits (201), Expect = 6e-18
 Identities = 44/207 (21%), Positives = 70/207 (33%), Gaps = 29/207 (14%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAH-IGNLTELSTLSLNGNNISGQ 60
           L L+ N +   I        +L +L L +N  S  +    I  L  L    L       +
Sbjct: 182 LDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240

Query: 61  IPEE---IGGLLNLDSLDLSMNRLS------GPIPNQIGELRDLRILNLSQNNLIGTIPF 111
              E      L  L +L +   RL+        I +    L ++   +L    +     F
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF 300

Query: 112 --------------QIGNLVG--LQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLS 155
                         + G      L+ L+ L++ S  G        L  L+ L+LS N LS
Sbjct: 301 SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLS 360

Query: 156 --GEIPASLSSMLSLVAVNLSYNNLEG 180
             G    S     SL  ++LS+N +  
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVIT 387

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 73.9 bits (182), Expect = 2e-15
 Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 3/119 (2%)

Query: 1   MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ 60
            L L+   +    P    SLS L  L++S N            L  L  L  + N+I   
Sbjct: 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 533

Query: 61  IPEEIGGLL-NLDSLDLSMNRLSGPIPNQ--IGELRDLRILNLSQNNLIGTIPFQIGNL 116
             +E+     +L  L+L+ N  +    +Q  +  ++D R L +    +    P     +
Sbjct: 534 KKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM 592

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  130 bits (329), Expect = 4e-35
 Identities = 36/209 (17%), Positives = 77/209 (36%), Gaps = 14/209 (6%)

Query: 1   MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNI--- 57
                          +  +L  L ++ + +     ++P  +  L E+  +++  N     
Sbjct: 229 NENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG 288

Query: 58  -----SGQIPEEIGGLLNLDSLDLSMNRL-SGPIPNQIGELRDLRILNLSQNNLIGTIPF 111
                  Q   +      +  + +  N L + P+   + +++ L +L    N L G +P 
Sbjct: 289 EQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP- 347

Query: 112 QIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLS--SMLSLV 169
             G+ + L  L +L+YN +T       G   ++++L+ +HN L   IP      S+  + 
Sbjct: 348 AFGSEIKLASL-NLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMS 405

Query: 170 AVNLSYNNLEGPLPDGSVFSSSQSSAFTN 198
           A++ SYN +                   N
Sbjct: 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGIN 434

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  129 bits (327), Expect = 8e-35
 Identities = 45/239 (18%), Positives = 86/239 (35%), Gaps = 28/239 (11%)

Query: 1   MLGLAGNSIGG-------KIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLN 53
            +  + N IG         +         +  ++LS+NQ+S          + LS+++L 
Sbjct: 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLM 465

Query: 54  GNNISG-------QIPEEIGGLLNLDSLDLSMNRLSG-PIPNQIGELRDLRILNLSQNNL 105
           GN ++           E       L S+DL  N+L+      +   L  L  ++LS N+ 
Sbjct: 466 GNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF 525

Query: 106 IGTIPFQIGNLVGLQDL-----QDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPA 160
               P Q  N   L+       +D   N    E P  +     L  L +  N++   +  
Sbjct: 526 -SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNE 583

Query: 161 SLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCGKVQGLRPCNALSTDK 219
            ++   ++  +++  N          V    ++  +    D   K Q +R C+AL   +
Sbjct: 584 KITP--NISVLDIKDNPNISIDLS-YVCPYIEAGMYMLFYD---KTQDIRGCDALDIKR 636

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  128 bits (324), Expect = 2e-34
 Identities = 36/220 (16%), Positives = 82/220 (37%), Gaps = 32/220 (14%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGE-------------------IPAHIG 42
           +G   N+I   +   +  L++L + ++ ++    E                         
Sbjct: 188 IGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWD 246

Query: 43  NLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL--------SGPIPNQIGELRD 94
           NL +L+ + +       ++P  +  L  +  ++++ NR                      
Sbjct: 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306

Query: 95  LRILNLSQNNLI-GTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNN 153
           ++I+ +  NNL    +   +  +  L  L +  YN L G++PA  G   +L SLNL++N 
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKMKKLGML-ECLYNQLEGKLPA-FGSEIKLASLNLAYNQ 364

Query: 154 LSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQS 193
           ++            +  ++ ++N L+  +P+     S   
Sbjct: 365 ITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSV 403

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  120 bits (304), Expect = 1e-31
 Identities = 43/206 (20%), Positives = 72/206 (34%), Gaps = 26/206 (12%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAH--IGNLTELSTLSLNGNNISG 59
           L LA N I        G   Q+  L  + N+L   IP      +++ +S +  + N I  
Sbjct: 358 LNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGS 416

Query: 60  -------QIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNL------- 105
                   +       +N+ S++LS N++S            L  +NL  N L       
Sbjct: 417 VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNS 476

Query: 106 IGTIPFQIGNLVGLQDLQDLSYNSLTGEIPA-QLGKLTRLQSLNLSHNNLSGEIPASLSS 164
           +        N   L  + DL +N LT      +   L  L  ++LS+N+ S   P    +
Sbjct: 477 LKDENENFKNTYLLTSI-DLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLN 534

Query: 165 MLSLVA------VNLSYNNLEGPLPD 184
             +L         +   N      P+
Sbjct: 535 SSTLKGFGIRNQRDAQGNRTLREWPE 560

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  118 bits (299), Expect = 5e-31
 Identities = 19/204 (9%), Positives = 55/204 (26%), Gaps = 13/204 (6%)

Query: 2   LGLAGNSIGG----KIPAEIGSLSQLVELHLSSNQLSGEIPAHIG--NLTELSTLSLNGN 55
           L L  +          P  I +     +              +    + ++L    +N +
Sbjct: 110 LALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSD 169

Query: 56  NISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGN 115
                I +     L    +    N ++  +   +  L  LR   +  +  +     +   
Sbjct: 170 PQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWE 228

Query: 116 LVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSY 175
                  ++  Y         +   L  L  + + +     ++P  L ++  +  +N++ 
Sbjct: 229 N------ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC 282

Query: 176 NNLEGPLPDGSVFSSSQSSAFTNN 199
           N           + +   +     
Sbjct: 283 NRGISGEQLKDDWQALADAPVGEK 306

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  116 bits (292), Expect = 4e-30
 Identities = 28/183 (15%), Positives = 57/183 (31%), Gaps = 13/183 (7%)

Query: 7   NSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ----IP 62
           +  G +    + S  ++  L L     SG +P  IG LTEL  L+L  +          P
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP 126

Query: 63  EEIGGLLNLDSLDLSMNRLSGPIPNQIGELR--DLRILNLSQNNLIGTIPFQIGNLVGLQ 120
           + I   ++ +              +        DL    ++ +    +I       +   
Sbjct: 127 KGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDT 186

Query: 121 DLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEG 180
            +     N++T  +   + +LT+L+   + ++    E              N  Y     
Sbjct: 187 QI-GQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE-----NSEYAQQYK 239

Query: 181 PLP 183
              
Sbjct: 240 TED 242

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 76.6 bits (189), Expect = 2e-16
 Identities = 20/138 (14%), Positives = 39/138 (28%), Gaps = 7/138 (5%)

Query: 49  TLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIG- 107
             +   +    Q    +     +  L L     SG +P+ IG+L +L +L L  +     
Sbjct: 61  NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN 120

Query: 108 ---TIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKL--TRLQSLNLSHNNLSGEIPASL 162
                P  I   +  +                   +   + L    ++ +     I  S 
Sbjct: 121 ERLFGPKGISANMSDEQK-QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS 179

Query: 163 SSMLSLVAVNLSYNNLEG 180
              L    +    NN+  
Sbjct: 180 RITLKDTQIGQLSNNITF 197

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  123 bits (312), Expect = 4e-34
 Identities = 44/192 (22%), Positives = 78/192 (40%), Gaps = 14/192 (7%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           + +    +  ++P  +   + L  L L+ N L   +PA I +L  L  LS+       ++
Sbjct: 109 MTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTEL 166

Query: 62  PEEIG---------GLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQ 112
           PE +          GL+NL SL L    +   +P  I  L++L+ L +  + L   +   
Sbjct: 167 PEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLS-ALGPA 224

Query: 113 IGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVN 172
           I +L  L++L DL   +     P   G    L+ L L   +    +P  +  +  L  ++
Sbjct: 225 IHHLPKLEEL-DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283

Query: 173 LSYNNLEGPLPD 184
           L        LP 
Sbjct: 284 LRGCVNLSRLPS 295

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  120 bits (304), Expect = 5e-33
 Identities = 38/185 (20%), Positives = 68/185 (36%), Gaps = 15/185 (8%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L L    +  + P +   LS L  + + +  L  E+P  +     L TL+L  N +   +
Sbjct: 86  LELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-AL 142

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIPNQIG---------ELRDLRILNLSQNNLIGTIPFQ 112
           P  I  L  L  L +        +P  +           L +L+ L L    +  ++P  
Sbjct: 143 PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPAS 201

Query: 113 IGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVN 172
           I NL  L+ L  +  + L+  +   +  L +L+ L+L         P        L  + 
Sbjct: 202 IANLQNLKSL-KIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259

Query: 173 LSYNN 177
           L   +
Sbjct: 260 LKDCS 264

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  120 bits (303), Expect = 7e-33
 Identities = 45/191 (23%), Positives = 79/191 (41%), Gaps = 13/191 (6%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGN---------LTELSTLSL 52
           L LA N +   +PA I SL++L EL + +     E+P  + +         L  L +L L
Sbjct: 132 LTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL 190

Query: 53  NGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQ 112
               I   +P  I  L NL SL +  + LS  +   I  L  L  L+L     +   P  
Sbjct: 191 EWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPI 248

Query: 113 IGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVN 172
            G    L+ L     ++L   +P  + +LT+L+ L+L        +P+ ++ + +   + 
Sbjct: 249 FGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307

Query: 173 LSYNNLEGPLP 183
           +  +       
Sbjct: 308 VPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  108 bits (272), Expect = 2e-28
 Identities = 36/157 (22%), Positives = 58/157 (36%), Gaps = 6/157 (3%)

Query: 12  KIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNL 71
               E   L  L  L L    +   +PA I NL  L +L +  + +S  +   I  L  L
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKL 231

Query: 72  DSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLT 131
           + LDL         P   G    L+ L L   + + T+P  I  L  L+ L DL      
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL-DLRGCVNL 290

Query: 132 GEIPAQLGKLTRLQSLNLSHN---NLSGEIPASLSSM 165
             +P+ + +L     + +  +    L    P +  + 
Sbjct: 291 SRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 86.9 bits (216), Expect = 2e-20
 Identities = 30/194 (15%), Positives = 60/194 (30%), Gaps = 34/194 (17%)

Query: 16  EIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPE------------ 63
                S    L+   +         +           N  + + +               
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGR 66

Query: 64  ---------EIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIG 114
                    E        +L+L    L    P+Q   L  L+ + +    L+  +P  + 
Sbjct: 67  ALKATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ 124

Query: 115 NLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASL---------SSM 165
              GL+ L  L+ N L   +PA +  L RL+ L++       E+P  L           +
Sbjct: 125 QFAGLETL-TLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182

Query: 166 LSLVAVNLSYNNLE 179
           ++L ++ L +  + 
Sbjct: 183 VNLQSLRLEWTGIR 196

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 78.4 bits (194), Expect = 3e-17
 Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 1/105 (0%)

Query: 1   MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ 60
            L +  + +   +   I  L +L EL L         P   G    L  L L   +    
Sbjct: 210 SLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT 268

Query: 61  IPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNL 105
           +P +I  L  L+ LDL        +P+ I +L    I+ +  +  
Sbjct: 269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 78.1 bits (193), Expect = 3e-17
 Identities = 28/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 40  HIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPN------------ 87
           H  + +    L   G+       + +       + D +    +    N            
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGR 66

Query: 88  ---------QIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQL 138
                    +         L L    L    P Q   L  LQ +  +    L  E+P  +
Sbjct: 67  ALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHM-TIDAAGLM-ELPDTM 123

Query: 139 GKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPD 184
            +   L++L L+ N L   +PAS++S+  L  +++        LP+
Sbjct: 124 QQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPE 168

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  123 bits (310), Expect = 2e-32
 Identities = 42/222 (18%), Positives = 80/222 (36%), Gaps = 36/222 (16%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSG-------------------EIPAHIG 42
           +G   N I   I   I  L++L  ++ +++  +                           
Sbjct: 430 IGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWS 488

Query: 43  NLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGP---------IPNQIGELR 93
           NL +L+ + L       Q+P+ +  L  L SL+++ NR             + +      
Sbjct: 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGP 548

Query: 94  DLRILNLSQNNLIG-TIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHN 152
            ++I  +  NNL        +  +V L  L D  +N +   + A  G   +L  L L +N
Sbjct: 549 KIQIFYMGYNNLEEFPASASLQKMVKLGLL-DCVHNKVR-HLEA-FGTNVKLTDLKLDYN 605

Query: 153 NLSGEIPASLSSMLS-LVAVNLSYNNLEGPLPDGSVFSSSQS 193
            +  EIP    +    +  +  S+N L+  +P+     S   
Sbjct: 606 QIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYV 645

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  122 bits (308), Expect = 3e-32
 Identities = 40/201 (19%), Positives = 73/201 (36%), Gaps = 18/201 (8%)

Query: 4   LAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISG---- 59
                          +L  L ++ L +     ++P  + +L EL +L++  N        
Sbjct: 474 SDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQL 533

Query: 60  -----QIPEEIGGLLNLDSLDLSMNRLSG-PIPNQIGELRDLRILNLSQNNLIGTIPFQI 113
                ++ ++      +    +  N L   P    + ++  L +L+   N +        
Sbjct: 534 KADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAF 591

Query: 114 GNLVGLQDLQDLSYNSLTGEIPAQLGKLTR-LQSLNLSHNNLSGEIP--ASLSSMLSLVA 170
           G  V L DL  L YN +  EIP      T  ++ L  SHN L   IP   +  S+  + +
Sbjct: 592 GTNVKLTDL-KLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGS 648

Query: 171 VNLSYNNLEGPLPDGSVFSSS 191
           V+ SYN +     + S     
Sbjct: 649 VDFSYNKIGSEGRNISCSMDD 669

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  118 bits (297), Expect = 1e-30
 Identities = 37/227 (16%), Positives = 79/227 (34%), Gaps = 31/227 (13%)

Query: 2   LGLAGNSIGGKIPAEIGS------LSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGN 55
           +  + N IG      I              + LS N++           + +ST+ L+ N
Sbjct: 649 VDFSYNKIGS-EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN 707

Query: 56  NIS-------GQIPEEIGGLLNLDSLDLSMNRLSGPIPNQI--GELRDLRILNLSQNNLI 106
            ++                   L ++DL  N+L+  + +      L  L  +++S N   
Sbjct: 708 LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCF- 765

Query: 107 GTIPFQIGNLVGLQDL-----QDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPAS 161
            + P Q  N   L+       +D   N +  + P  +     L  L +  N++  ++   
Sbjct: 766 SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEK 824

Query: 162 LSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFT----NNKDLCG 204
           L+    L  ++++ N     +   SV    ++  +       +D+ G
Sbjct: 825 LTP--QLYILDIADNPNIS-IDVTSVCPYIEAGMYVLLYDKTQDIRG 868

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  115 bits (289), Expect = 1e-29
 Identities = 41/208 (19%), Positives = 72/208 (34%), Gaps = 30/208 (14%)

Query: 2   LGLAGNSIGGKIPAEIGS-LSQLVELHLSSNQLSGEIP--AHIGNLTELSTLSLNGNNIS 58
           L L  N I   IP +  +   Q+  L  S N+L   IP   +  ++  + ++  + N I 
Sbjct: 600 LKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIG 657

Query: 59  GQIPEEIGG------LLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNL------- 105
                 I         +N  ++ LS N +             +  + LS N +       
Sbjct: 658 S-EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENS 716

Query: 106 IGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQL--GKLTRLQSLNLSHNNLSGEIPASLS 163
           +        N   L  + DL +N LT  +        L  L ++++S+N  S   P    
Sbjct: 717 LKPKDGNYKNTYLLTTI-DLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPL 773

Query: 164 SMLSLVAVNLSY------NNLEGPLPDG 185
           +   L A  + +      N +    P G
Sbjct: 774 NSSQLKAFGIRHQRDAEGNRILRQWPTG 801

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  110 bits (277), Expect = 5e-28
 Identities = 32/214 (14%), Positives = 65/214 (30%), Gaps = 27/214 (12%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L LAG    G++P  IG L++L  L   ++  +                    + I    
Sbjct: 328 LSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHY 387

Query: 62  PEEIGGLL-NLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQ------NNLIGTIPFQIG 114
            +        L+  DL  + ++     ++  ++    ++L         N I  I   I 
Sbjct: 388 KKMFLDYDQRLNLSDLLQDAINR--NPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQ 445

Query: 115 NLVGLQDL------------------QDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSG 156
            L  LQ +                   +  Y             L  L  + L +     
Sbjct: 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT 505

Query: 157 EIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSS 190
           ++P  L  +  L ++N++ N         + ++ 
Sbjct: 506 QLPDFLYDLPELQSLNIACNRGISAAQLKADWTR 539

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  108 bits (271), Expect = 3e-27
 Identities = 36/202 (17%), Positives = 73/202 (36%), Gaps = 23/202 (11%)

Query: 7   NSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIG 66
           +  G +   ++ +  ++  L L+     G +P  IG LTEL  LS   ++ +        
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 67  GLLNLDSLDLSMNRLSGPIPN-QIGELRDLRILNLSQNNLIG---TIPFQIGNLVGLQDL 122
             L  D  +   +R+        +   + L + +L Q+ +       P +  + + L+D 
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDT 428

Query: 123 QDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSG-------------------EIPASLS 163
           Q  +  +    I   + +LT+LQ +  +++  +                        S S
Sbjct: 429 QIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWS 488

Query: 164 SMLSLVAVNLSYNNLEGPLPDG 185
           ++  L  V L        LPD 
Sbjct: 489 NLKDLTDVELYNCPNMTQLPDF 510

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 10/111 (9%), Positives = 34/111 (30%), Gaps = 2/111 (1%)

Query: 73  SLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTG 132
           ++ + +   +  I +          L+               + +     ++L  +    
Sbjct: 256 NVPIQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKEL--DMWGD 313

Query: 133 EIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLP 183
           +    L    R+  L+L+     G +P ++  +  L  ++   ++      
Sbjct: 314 QPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGR 364

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  117 bits (294), Expect = 2e-30
 Identities = 44/188 (23%), Positives = 75/188 (39%), Gaps = 6/188 (3%)

Query: 2   LGLAGNSIG--GKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISG 59
           L L+ + I        ++ +LS L  L+LS N+             +L  L L    +  
Sbjct: 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414

Query: 60  QIPEEI-GGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVG 118
           +  +     L  L  L+LS + L          L  L+ LNL  N+       +  +L  
Sbjct: 415 KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT 474

Query: 119 LQDLQ--DLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYN 176
           L  L+   LS+  L+         L  +  ++LSHN L+     +LS +  +  +NL+ N
Sbjct: 475 LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASN 533

Query: 177 NLEGPLPD 184
           ++   LP 
Sbjct: 534 HISIILPS 541

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  112 bits (283), Expect = 8e-29
 Identities = 36/194 (18%), Positives = 62/194 (31%), Gaps = 4/194 (2%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L  + N +          L  L  L L+  Q+         +   L TL L  N +    
Sbjct: 38  LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMA 97

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
              + G   L  L      +S      +   + L  L L  N++      +      L+ 
Sbjct: 98  ETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKV 157

Query: 122 LQDLSYNSLTGEIPAQLGKLTRLQ--SLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 179
           L D   N++       +  L +    SLNL+ N+++  I           ++N       
Sbjct: 158 L-DFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQSLNFGGTQNL 215

Query: 180 GPLPDGSVFSSSQS 193
             +  G   S+ QS
Sbjct: 216 LVIFKGLKNSTIQS 229

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  112 bits (282), Expect = 9e-29
 Identities = 37/186 (19%), Positives = 58/186 (31%), Gaps = 4/186 (2%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L L    I         S  +L  L L++N L       +     L  L      IS   
Sbjct: 62  LDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSID 121

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
              +     L+SL L  N +S     +      L++L+   N +       + +L    +
Sbjct: 122 FIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATN 181

Query: 122 LQ-DLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLS--SMLSLVAVNLSYNNL 178
           L  +L+ N +   I          QSLN         I   L   ++ SL        + 
Sbjct: 182 LSLNLNGNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD 240

Query: 179 EGPLPD 184
           E   P 
Sbjct: 241 EDISPA 246

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  111 bits (280), Expect = 2e-28
 Identities = 42/206 (20%), Positives = 76/206 (36%), Gaps = 5/206 (2%)

Query: 13  IPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLD 72
           IP  +   +    L  S N L          L  L+ L L    I     +       LD
Sbjct: 27  IPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLD 84

Query: 73  SLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTG 132
           +L L+ N L       +   + L+ L   Q  +       + N   L+ L  L  N ++ 
Sbjct: 85  TLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESL-YLGSNHISS 143

Query: 133 EIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSM--LSLVAVNLSYNNLEGPLPDGSVFSS 190
               +     +L+ L+  +N +       +SS+   + +++NL+ N++ G  P     + 
Sbjct: 144 IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAV 203

Query: 191 SQSSAFTNNKDLCGKVQGLRPCNALS 216
            QS  F   ++L    +GL+     S
Sbjct: 204 FQSLNFGGTQNLLVIFKGLKNSTIQS 229

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  110 bits (277), Expect = 5e-28
 Identities = 47/183 (25%), Positives = 72/183 (39%), Gaps = 6/183 (3%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHI-GNLTELSTLSLNGNNISGQ 60
           L L+ N              QL  L L+  +L  +       NL  L  L+L+ + +   
Sbjct: 381 LNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS 440

Query: 61  IPEEIGGLLNLDSLDLSMNRLSGPI---PNQIGELRDLRILNLSQNNLIGTIPFQIGNLV 117
             +   GL  L  L+L  N          N +  L  L IL LS  +L         +L 
Sbjct: 441 SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK 500

Query: 118 GLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNN 177
            +  + DLS+N LT      L  L  +  LNL+ N++S  +P+ L  +     +NL  N 
Sbjct: 501 MMNHV-DLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNP 558

Query: 178 LEG 180
           L+ 
Sbjct: 559 LDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  109 bits (275), Expect = 8e-28
 Identities = 46/186 (24%), Positives = 71/186 (38%), Gaps = 8/186 (4%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAH-IGNLTELSTLSLNGNNI--S 58
           L L+ N           +   L  L +  N    E+    + NL  L  L L+ ++I  S
Sbjct: 306 LVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS 365

Query: 59  GQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPF-QIGNLV 117
                ++  L +L SL+LS N           E   L +L+L+   L          NL 
Sbjct: 366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425

Query: 118 GLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEI---PASLSSMLSLVAVNLS 174
            L+ L +LS++ L          L  LQ LNL  N+          SL ++  L  + LS
Sbjct: 426 LLKVL-NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS 484

Query: 175 YNNLEG 180
           + +L  
Sbjct: 485 FCDLSS 490

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  106 bits (266), Expect = 2e-26
 Identities = 41/191 (21%), Positives = 72/191 (37%), Gaps = 9/191 (4%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQL--VELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISG 59
           L    N+I      ++ SL Q   + L+L+ N ++  I     +     +L+  G     
Sbjct: 158 LDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQSLNFGGTQNLL 216

Query: 60  QIPEEIGG--LLNLDSLDLSMNRLSGPIPNQIGELRD--LRILNLSQNNLIGTIPFQIGN 115
            I + +    + +L              P     L +  +  +NL ++            
Sbjct: 217 VIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHC 276

Query: 116 LVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSY 175
             GLQ+L DL+   L+ E+P+ L  L+ L+ L LS N        S S+  SL  +++  
Sbjct: 277 FSGLQEL-DLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334

Query: 176 NNLEGPLPDGS 186
           N     L  G 
Sbjct: 335 NTKRLELGTGC 345

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 74.7 bits (184), Expect = 1e-15
 Identities = 36/157 (22%), Positives = 60/157 (38%), Gaps = 9/157 (5%)

Query: 2   LGLAGNSIGGKIPAEIGS---LSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNIS 58
           L L GN        +  S   L +L  L LS   LS        +L  ++ + L+ N ++
Sbjct: 454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513

Query: 59  GQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVG 118
               E +  L  +  L+L+ N +S  +P+ +  L   R +NL QN L  T      + + 
Sbjct: 514 SSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC-----SNIY 567

Query: 119 LQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLS 155
             +    +   L             L+ + LS   LS
Sbjct: 568 FLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  114 bits (288), Expect = 1e-29
 Identities = 45/187 (24%), Positives = 66/187 (35%), Gaps = 6/187 (3%)

Query: 2   LGLAGNSIGGKIPA--EIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISG 59
           L L+ N++             + L  L LS N     + A+   L EL  L    + +  
Sbjct: 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKR 413

Query: 60  QIPEE-IGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQI-GNLV 117
                    L  L  LD+S              L  L  L ++ N+        +  N  
Sbjct: 414 VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT 473

Query: 118 GLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNN 177
            L  L DLS   L          L RLQ LN+SHNNL     +  + + SL  ++ S+N 
Sbjct: 474 NLTFL-DLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532

Query: 178 LEGPLPD 184
           +E     
Sbjct: 533 IETSKGI 539

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  113 bits (285), Expect = 5e-29
 Identities = 39/179 (21%), Positives = 69/179 (38%), Gaps = 4/179 (2%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAH-IGNLTELSTLSLNGNNISGQ 60
           L L+ N     + A    L +L  L    + L          +L +L  L ++  N    
Sbjct: 381 LDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID 439

Query: 61  IPEEIGGLLNLDSLDLSMNRLSGPIPNQI-GELRDLRILNLSQNNLIGTIPFQIGNLVGL 119
                 GL +L++L ++ N       + +     +L  L+LS+  L          L  L
Sbjct: 440 FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL 499

Query: 120 QDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 178
           Q L ++S+N+L     +   +L  L +L+ S N +            SL   NL+ N++
Sbjct: 500 QLL-NMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  111 bits (279), Expect = 2e-28
 Identities = 47/188 (25%), Positives = 72/188 (38%), Gaps = 7/188 (3%)

Query: 4   LAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPE 63
           L+ N +         + S+L  L LS  ++          L  LS L L GN I    P 
Sbjct: 39  LSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG 98

Query: 64  EIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIG-TIPFQIGNLVGLQDL 122
              GL +L++L     +L+      IG+L  L+ LN++ N +    +P    NL  L  +
Sbjct: 99  SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHV 158

Query: 123 QDLSYNSLTGEIPAQLGKLTRL----QSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 178
            DLSYN +       L  L        SL++S N +   I       + L  + L  N  
Sbjct: 159 -DLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFN 216

Query: 179 EGPLPDGS 186
              +    
Sbjct: 217 SSNIMKTC 224

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  107 bits (270), Expect = 4e-27
 Identities = 40/184 (21%), Positives = 64/184 (34%), Gaps = 6/184 (3%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L L+   I          L  L  L L+ N +    P     LT L  L      ++   
Sbjct: 61  LDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE 120

Query: 62  PEEIGGLLNLDSLDLSMNRLSG-PIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQ 120
              IG L+ L  L+++ N +    +P     L +L  ++LS N +       +  L    
Sbjct: 121 SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP 180

Query: 121 DLQ---DLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLS-LVAVNLSYN 176
            +    D+S N +   I  Q  +  +L  L L  N  S  I  +    L+ L    L   
Sbjct: 181 QVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILG 239

Query: 177 NLEG 180
             + 
Sbjct: 240 EFKD 243

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  105 bits (265), Expect = 2e-26
 Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 8/172 (4%)

Query: 13  IPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLD 72
           +P +I S      + LS N L         N +EL  L L+   I     +   GL +L 
Sbjct: 26  VPDDIPS--STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS 83

Query: 73  SLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTG 132
           +L L+ N +    P     L  L  L   +  L     F IG L+ L+ L ++++N +  
Sbjct: 84  NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL-NVAHNFIHS 142

Query: 133 -EIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSM----LSLVAVNLSYNNLE 179
            ++PA    LT L  ++LS+N +       L  +       +++++S N ++
Sbjct: 143 CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID 194

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 92.8 bits (231), Expect = 6e-22
 Identities = 37/192 (19%), Positives = 72/192 (37%), Gaps = 16/192 (8%)

Query: 2   LGLAGNSIGG-KIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELS----TLSLNGNN 56
           L +A N I   K+PA   +L+ LV + LS N +       +  L E      +L ++ N 
Sbjct: 133 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP 192

Query: 57  ISGQIPEEIGGLLNLDSLDLSMNRLSGPIP-NQIGELRDLRILNLSQNNLIGTIP---FQ 112
           I   I ++    + L  L L  N  S  I    +  L  L +  L             F+
Sbjct: 193 ID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFE 251

Query: 113 IGNLVGLQDLQ----DLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSL 168
              + GL D+      L+Y +   +   +   L  + +++L+  ++       +      
Sbjct: 252 PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKW 309

Query: 169 VAVNLSYNNLEG 180
            ++++    L+ 
Sbjct: 310 QSLSIIRCQLKQ 321

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 90.1 bits (224), Expect = 6e-21
 Identities = 49/203 (24%), Positives = 69/203 (33%), Gaps = 12/203 (5%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISG-Q 60
           L L GN I    P     L+ L  L     +L+      IG L  L  L++  N I   +
Sbjct: 85  LILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK 144

Query: 61  IPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLS---QNNLIGTIPFQIGNLV 117
           +P     L NL  +DLS N +     N +  LR+   +NLS     N I  I  Q    +
Sbjct: 145 LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI 204

Query: 118 GLQDLQDLSYNSLTGEIPA-QLGKLTRLQSLNLS------HNNLSGEIPASLSSMLSLVA 170
            L +L  L  N  +  I    L  L  L    L         NL    P+ +  +  +  
Sbjct: 205 KLHEL-TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI 263

Query: 171 VNLSYNNLEGPLPDGSVFSSSQS 193
                        D   F    +
Sbjct: 264 DEFRLTYTNDFSDDIVKFHCLAN 286

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 89.3 bits (222), Expect = 1e-20
 Identities = 48/187 (25%), Positives = 75/187 (40%), Gaps = 12/187 (6%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           + LAG SI  K   ++    +   L +   QL  + P    +L  L +L+L  N  S  I
Sbjct: 290 MSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLK-QFPT--LDLPFLKSLTLTMNKGS--I 342

Query: 62  PEEIGGLLNLDSLDLSMNRLS--GPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGL 119
             +   L +L  LDLS N LS  G           LR L+LS N  I  +      L  L
Sbjct: 343 SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEEL 401

Query: 120 QDLQDLSYNSLTGEIPAQ-LGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 178
           Q L D  +++L           L +L  L++S+ N   +       + SL  + ++ N+ 
Sbjct: 402 QHL-DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460

Query: 179 EGPLPDG 185
           +      
Sbjct: 461 KDNTLSN 467

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 82.0 bits (203), Expect = 3e-18
 Identities = 25/131 (19%), Positives = 47/131 (35%), Gaps = 2/131 (1%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHI-GNLTELSTLSLNGNNISGQ 60
           L ++  +           L+ L  L ++ N       +++  N T L+ L L+   +   
Sbjct: 429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI 488

Query: 61  IPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQ 120
                  L  L  L++S N L     +   +L  L  L+ S N +  +          L 
Sbjct: 489 SWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLA 548

Query: 121 DLQDLSYNSLT 131
              +L+ NS+ 
Sbjct: 549 FF-NLTNNSVA 558

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  101 bits (255), Expect = 8e-26
 Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 13/179 (7%)

Query: 1   MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ 60
            L L  N I    P  + SL+ L       NQ++   P  + N+T L++L +  N I+  
Sbjct: 181 SLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD- 235

Query: 61  IPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQ 120
               +  L  L  L++  N++S      + +L  L++LN+  +N I  I   + NL  L 
Sbjct: 236 -LSPLANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVG-SNQISDISV-LNNLSQLN 290

Query: 121 DLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 179
            L  L+ N L  E    +G LT L +L LS N+++   P  L+S+  + + + +   ++
Sbjct: 291 SL-FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  101 bits (254), Expect = 1e-25
 Identities = 43/179 (24%), Positives = 83/179 (46%), Gaps = 13/179 (7%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L +  + +    P  I +L+ L  L L+ NQ+    P  + +LT L   +   N I+   
Sbjct: 160 LTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDIT 215

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
           P  +  +  L+SL +  N+++   P  +  L  L  L +  N +  +    + +L  L+ 
Sbjct: 216 P--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQI--SDINAVKDLTKLKM 269

Query: 122 LQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEG 180
           L ++  N ++ +I   L  L++L SL L++N L  E    +  + +L  + LS N++  
Sbjct: 270 L-NVGSNQIS-DISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 98.8 bits (247), Expect = 1e-24
 Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 14/183 (7%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L L  N       + + +++ L  L ++ +++    P  I NLT+L +LSLN N I    
Sbjct: 137 LNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDIS 193

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
           P  +  L +L      +N+++   P  +  +  L  L +  N +    P    NL  L  
Sbjct: 194 P--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPL--ANLSQLTW 247

Query: 122 LQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGP 181
           L ++  N ++  I A +  LT+L+ LN+  N +S    + L+++  L ++ L+ N L   
Sbjct: 248 L-EIGTNQISD-INA-VKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNE 302

Query: 182 LPD 184
             +
Sbjct: 303 DME 305

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 93.0 bits (232), Expect = 1e-22
 Identities = 42/179 (23%), Positives = 84/179 (46%), Gaps = 14/179 (7%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
             L   S+   +      L  + +L ++  +++  I   I  LT L  L+LNGN I+   
Sbjct: 27  AVLQKASVTDVVT--QEELESITKLVVAGEKVA-SIQG-IEYLTNLEYLNLNGNQITDIS 82

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
           P  +  L+ L +L +  N+++      +  L +LR L L+++N+    P    NL  +  
Sbjct: 83  P--LSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDISPL--ANLTKMYS 136

Query: 122 LQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEG 180
           L +L  N    ++   L  +T L  L ++ + +    P  ++++  L +++L+YN +E 
Sbjct: 137 L-NLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED 191

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 92.6 bits (231), Expect = 2e-22
 Identities = 39/179 (21%), Positives = 80/179 (44%), Gaps = 14/179 (7%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L      I    P     L++ +   L    ++  +      L  ++ L + G  ++   
Sbjct: 5   LATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS-- 58

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
            + I  L NL+ L+L+ N+++   P  +  L  L  L +  N +  T    + NL  L++
Sbjct: 59  IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTNLRE 114

Query: 122 LQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEG 180
           L  L+ ++++   P  L  LT++ SLNL  N+   ++   LS+M  L  + ++ + ++ 
Sbjct: 115 L-YLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKD 169

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 68.3 bits (168), Expect = 1e-13
 Identities = 28/137 (20%), Positives = 57/137 (41%), Gaps = 11/137 (8%)

Query: 47  LSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLI 106
            +TL+     I+   P     L       L    ++  +     EL  +  L ++    +
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEK-V 56

Query: 107 GTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSML 166
            +I   I  L  L+ L +L+ N +T   P  L  L +L +L +  N ++    ++L ++ 
Sbjct: 57  ASIQG-IEYLTNLEYL-NLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLT 110

Query: 167 SLVAVNLSYNNLEGPLP 183
           +L  + L+ +N+    P
Sbjct: 111 NLRELYLNEDNISDISP 127

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 99.3 bits (248), Expect = 5e-25
 Identities = 41/179 (22%), Positives = 76/179 (42%), Gaps = 12/179 (6%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
             +  +S+   + +   S   + EL LS N LS    A +   T+L  L+L+ N +    
Sbjct: 15  EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-- 72

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
             ++  L  L +LDL+ N +      ++     +  L+ + NN I  +        G ++
Sbjct: 73  TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAA-NNNISRVSC--SRGQGKKN 124

Query: 122 LQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSG-EIPASLSSMLSLVAVNLSYNNLE 179
           +  L+ N +T       G  +R+Q L+L  N +         +S  +L  +NL YN + 
Sbjct: 125 I-YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 98.1 bits (245), Expect = 1e-24
 Identities = 37/179 (20%), Positives = 63/179 (35%), Gaps = 14/179 (7%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L L  N +      E+     +  LH ++N +S  +            + L  N I+   
Sbjct: 85  LDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSC--SRGQGKKNIYLANNKITMLR 136

Query: 62  PEEIGGLLNLDSLDLSMNRLSG-PIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQ 120
             + G    +  LDL +N +              L  LNL  N +   +  Q+     L+
Sbjct: 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLK 194

Query: 121 DLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 179
            L DLS N L   +  +      +  ++L +N L   I  +L    +L   +L  N   
Sbjct: 195 TL-DLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 96.2 bits (240), Expect = 7e-24
 Identities = 27/181 (14%), Positives = 74/181 (40%), Gaps = 12/181 (6%)

Query: 13  IPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLD 72
           I     + ++     ++ + L   + +   +   +  L L+GN +S     ++     L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 73  SLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTG 132
            L+LS N L   +   +  L  LR L+L+ N +      ++     ++ L   + N+++ 
Sbjct: 62  LLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSIETL-HAANNNIS- 112

Query: 133 EIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQ 192
            +     +    +++ L++N ++            +  ++L  N ++  +    + +SS 
Sbjct: 113 RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT-VNFAELAASSD 169

Query: 193 S 193
           +
Sbjct: 170 T 170

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.1 bits (123), Expect = 7e-08
 Identities = 20/130 (15%), Positives = 40/130 (30%), Gaps = 11/130 (8%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNIS-GQ 60
           L L+ N +   +  E  S + +  + L +N+L   I   +     L    L GN    G 
Sbjct: 196 LDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGT 253

Query: 61  IPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQ 120
           + +       + ++     +    +  Q  E   +  L          +P          
Sbjct: 254 LRDFFSKNQRVQTVAKQTVKK---LTGQNEEECTVPTLGHYGAYCCEDLPAPFA-----D 305

Query: 121 DLQDLSYNSL 130
            L  L ++  
Sbjct: 306 RLIALGHHHH 315

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 97.5 bits (243), Expect = 8e-24
 Identities = 49/181 (27%), Positives = 72/181 (39%), Gaps = 8/181 (4%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHI-GNLTELSTLSLNGNNISGQ 60
           L L  N I          L  L  L LS N +   I       L  L+TL L  N ++  
Sbjct: 69  LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLT-T 126

Query: 61  IPEEI-GGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQI-GNLVG 118
           IP      L  L  L L  N +          +  LR L+L +   +  I       L  
Sbjct: 127 IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN 186

Query: 119 LQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 178
           L+ L +L+  +L  EIP  L  L +L  L+LS N+LS   P S   ++ L  + +  + +
Sbjct: 187 LRYL-NLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243

Query: 179 E 179
           +
Sbjct: 244 Q 244

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 89.4 bits (222), Expect = 6e-21
 Identities = 59/182 (32%), Positives = 83/182 (45%), Gaps = 10/182 (5%)

Query: 2   LGLAGNSIGGKIPAEI-GSLSQLVELHLSSNQLSGEIPAHI-GNLTELSTLSLNGNNISG 59
           L L+ N I   I       L+ L  L L  N+L+  IP      L++L  L L  N I  
Sbjct: 93  LQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE- 149

Query: 60  QIPEEI-GGLLNLDSLDLS-MNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLV 117
            IP      + +L  LDL  + RLS         L +LR LNL+  NL   IP  +  L+
Sbjct: 150 SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLI 207

Query: 118 GLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNN 177
            L +L DLS N L+   P     L  LQ L +  + +      +  ++ SLV +NL++NN
Sbjct: 208 KLDEL-DLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN 266

Query: 178 LE 179
           L 
Sbjct: 267 LT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 85.2 bits (211), Expect = 2e-19
 Identities = 53/180 (29%), Positives = 77/180 (42%), Gaps = 8/180 (4%)

Query: 2   LGLAGNSIGGKIPAEI-GSLSQLVELHLSSNQLSGEIPAHI-GNLTELSTLSLNGNNISG 59
           L L  N +   IP      LS+L EL L +N +   IP++    +  L  L L       
Sbjct: 117 LELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLS 174

Query: 60  QIPEEI-GGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVG 118
            I E    GL NL  L+L+M  L   IPN +  L  L  L+LS N+L    P     L+ 
Sbjct: 175 YISEGAFEGLSNLRYLNLAMCNLRE-IPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMH 232

Query: 119 LQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 178
           LQ L  +  + +          L  L  +NL+HNNL+       + +  L  ++L +N  
Sbjct: 233 LQKL-WMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 73.6 bits (181), Expect = 2e-15
 Identities = 40/161 (24%), Positives = 65/161 (40%), Gaps = 9/161 (5%)

Query: 21  SQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR 80
           +Q  ++      L  E+P  I   T    L+L+ N I          L +L+ L LS N 
Sbjct: 43  NQFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 81  LSGPIPNQIGELRDLRILNLSQNNLIGTIPFQI-GNLVGLQDLQDLSYNSLTGEIPAQL- 138
           +          L +L  L L  +N + TIP      L  L++L  L  N +   IP+   
Sbjct: 100 IRTIEIGAFNGLANLNTLELF-DNRLTTIPNGAFVYLSKLKEL-WLRNNPIE-SIPSYAF 156

Query: 139 GKLTRLQSLNLSHNNLSGEIPA-SLSSMLSLVAVNLSYNNL 178
            ++  L+ L+L        I   +   + +L  +NL+  NL
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL 197

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 65.9 bits (161), Expect = 9e-13
 Identities = 40/144 (27%), Positives = 63/144 (43%), Gaps = 10/144 (6%)

Query: 46  ELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNL 105
           + S +     N+  ++P+ I    N   L+L  N++     N    LR L IL LS  N 
Sbjct: 44  QFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLS-RNH 99

Query: 106 IGTIPFQI-GNLVGLQDLQDLSYNSLTGEIPAQ-LGKLTRLQSLNLSHNNLSGEIPASL- 162
           I TI       L  L  L +L  N LT  IP      L++L+ L L +N +   IP+   
Sbjct: 100 IRTIEIGAFNGLANLNTL-ELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAF 156

Query: 163 SSMLSLVAVNLSYNNLEGPLPDGS 186
           + + SL  ++L        + +G+
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGA 180

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 97.1 bits (242), Expect = 2e-23
 Identities = 44/182 (24%), Positives = 72/182 (39%), Gaps = 9/182 (4%)

Query: 2   LGLAGNSIGGKIPAEI-GSLSQLVELHLSSNQLSGEIPAHI-GNLTELSTLSLNGNNISG 59
           L ++ N I   +   +   L  L  L +  N L   I       L  L  L+L   N++ 
Sbjct: 109 LDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT- 165

Query: 60  QIPEEI-GGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVG 118
            IP E    L  L  L L    ++         L  L++L +S    + T+       + 
Sbjct: 166 SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225

Query: 119 LQDLQDLSYNSLTGEIPAQ-LGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNN 177
           L  L  +++ +LT  +P   +  L  L+ LNLS+N +S    + L  +L L  + L    
Sbjct: 226 LTSL-SITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ 283

Query: 178 LE 179
           L 
Sbjct: 284 LA 285

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 96.3 bits (240), Expect = 3e-23
 Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 9/182 (4%)

Query: 2   LGLAGNSIGGKIPAEI-GSLSQLVELHLSSNQLSGEIPAHI-GNLTELSTLSLNGNNISG 59
           L L  N +   +      +L  L  L L SN+L   IP  +   L+ L+ L ++ N I  
Sbjct: 61  LELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV- 117

Query: 60  QIPEEI-GGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQI-GNLV 117
            + + +   L NL SL++  N L          L  L  L L + N + +IP +   +L 
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLH 176

Query: 118 GLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNN 177
           GL  L  L + ++         +L RL+ L +SH      +  +    L+L ++++++ N
Sbjct: 177 GLIVL-RLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN 235

Query: 178 LE 179
           L 
Sbjct: 236 LT 237

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 95.2 bits (237), Expect = 7e-23
 Identities = 46/180 (25%), Positives = 70/180 (38%), Gaps = 7/180 (3%)

Query: 2   LGLAGNSIGGKIPAEI-GSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ 60
           L L   ++   IP E    L  L+ L L    ++         L  L  L ++       
Sbjct: 157 LTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDT 215

Query: 61  IPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQI-GNLVGL 119
           +       LNL SL ++   L+      +  L  LR LNLS  N I TI   +   L+ L
Sbjct: 216 MTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLS-YNPISTIEGSMLHELLRL 274

Query: 120 QDLQDLSYNSLTGEIPAQ-LGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 178
           Q++  L    L   +       L  L+ LN+S N L+    +   S+ +L  + L  N L
Sbjct: 275 QEI-QLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 94.4 bits (235), Expect = 1e-22
 Identities = 52/189 (27%), Positives = 78/189 (41%), Gaps = 9/189 (4%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHI-GNLTELSTLSLNGNNISGQ 60
           L L  N I      E  S   L EL L+ N +S  +      NL  L TL L  N +   
Sbjct: 37  LDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLK-L 94

Query: 61  IPEEI-GGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQI-GNLVG 118
           IP  +  GL NL  LD+S N++   +     +L +L+ L +  N+ +  I  +    L  
Sbjct: 95  IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNS 153

Query: 119 LQDLQDLSYNSLTGEIPAQ-LGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNN 177
           L+ L  L   +LT  IP + L  L  L  L L H N++     S   +  L  + +S+  
Sbjct: 154 LEQL-TLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211

Query: 178 LEGPLPDGS 186
               +    
Sbjct: 212 YLDTMTPNC 220

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 86.3 bits (214), Expect = 9e-20
 Identities = 46/181 (25%), Positives = 73/181 (40%), Gaps = 7/181 (3%)

Query: 2   LGLAGNSIGGKIPAEI-GSLSQLVELHLSSNQLSGEIPAHI-GNLTELSTLSLNGNNISG 59
           L +  N +   I       L+ L +L L    L+  IP     +L  L  L L   NI+ 
Sbjct: 133 LEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINA 190

Query: 60  QIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGL 119
                   L  L  L++S       +        +L  L+++  NL       + +LV L
Sbjct: 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250

Query: 120 QDLQDLSYNSLTGEIPAQ-LGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 178
           + L +LSYN ++  I    L +L RLQ + L    L+   P +   +  L  +N+S N L
Sbjct: 251 RFL-NLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308

Query: 179 E 179
            
Sbjct: 309 T 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 77.4 bits (191), Expect = 1e-16
 Identities = 42/160 (26%), Positives = 65/160 (40%), Gaps = 6/160 (3%)

Query: 21  SQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR 80
           +Q   +     +    +P  I   TE   L L  N I     +E     +L+ L+L+ N 
Sbjct: 11  AQDRAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI 67

Query: 81  LSGPIPNQIGELRDLRILNLSQNNLIGTIPFQI-GNLVGLQDLQDLSYNSLTGEIPAQLG 139
           +S   P     L +LR L L  +N +  IP  +   L  L  L D+S N +   +     
Sbjct: 68  VSAVEPGAFNNLFNLRTLGLR-SNRLKLIPLGVFTGLSNLTKL-DISENKIVILLDYMFQ 125

Query: 140 KLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 179
            L  L+SL +  N+L      + S + SL  + L   NL 
Sbjct: 126 DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT 165

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 94.3 bits (235), Expect = 3e-23
 Identities = 42/164 (25%), Positives = 65/164 (39%), Gaps = 8/164 (4%)

Query: 20  LSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEE--IGGLLNLDSLDLS 77
            + L  L LS N +   + ++   L +L  L    +N+  Q+ E      L NL  LD+S
Sbjct: 77  TTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDIS 134

Query: 78  MNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQI-GNLVGLQDLQDLSYNSLTGEIPA 136
                         L  L +L ++ N+        I   L  L  L DLS   L  ++  
Sbjct: 135 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL-DLSQCQLE-QLSP 192

Query: 137 Q-LGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 179
                L+ LQ LN+SHNN           + SL  ++ S N++ 
Sbjct: 193 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 82.4 bits (204), Expect = 7e-19
 Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 10/172 (5%)

Query: 13  IPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ--IPEEIGGLLN 70
           +P  I   S    L L SN+L          LT+L+ LSL+ N +S +    +   G  +
Sbjct: 22  VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS 79

Query: 71  LDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQI-GNLVGLQDLQDLSYNS 129
           L  LDLS N +   + +    L  L  L+   +NL     F +  +L  L  L D+S+  
Sbjct: 80  LKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL-DISHTH 137

Query: 130 LTGEIPAQ-LGKLTRLQSLNLSHNNLSGEIPA-SLSSMLSLVAVNLSYNNLE 179
                       L+ L+ L ++ N+          + + +L  ++LS   LE
Sbjct: 138 TR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 78.9 bits (195), Expect = 1e-17
 Identities = 43/159 (27%), Positives = 62/159 (38%), Gaps = 8/159 (5%)

Query: 2   LGLAGNSIGGKIPAEI-GSLSQLVELHLSSNQLSGEIPAHI-GNLTELSTLSLNGNNISG 59
           L    +++       +  SL  L+ L +S           I   L+ L  L + GN+   
Sbjct: 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQE 164

Query: 60  QIPEEI-GGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVG 118
               +I   L NL  LDLS  +L    P     L  L++LN+S NN      F    L  
Sbjct: 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 224

Query: 119 LQDLQDLSYNSLTGEIPAQL--GKLTRLQSLNLSHNNLS 155
           LQ L D S N +      Q      + L  LNL+ N+ +
Sbjct: 225 LQVL-DYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 67.3 bits (165), Expect = 2e-13
 Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 8/135 (5%)

Query: 48  STLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNL-- 105
           + +  N   ++  +P  I    +   L+L  N+L         +L  L  L+LS N L  
Sbjct: 10  TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 106 IGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASL-SS 164
            G           L+ L DLS+N +   + +    L +L+ L+  H+NL      S+  S
Sbjct: 67  KGCCSQSDFGTTSLKYL-DLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 124

Query: 165 MLSLVAVNLSYNNLE 179
           + +L+ +++S+ +  
Sbjct: 125 LRNLIYLDISHTHTR 139

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 38.8 bits (91), Expect = 7e-04
 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 94  DLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNN 153
               +  +   L  ++P  I        L +L  N L         KLT+L  L+LS N 
Sbjct: 8   SGTEIRCNSKGLT-SVPTGI--PSSATRL-ELESNKLQSLPHGVFDKLTQLTKLSLSSNG 63

Query: 154 LS--GEIPASLSSMLSLVAVNLSYNNL 178
           LS  G    S     SL  ++LS+N +
Sbjct: 64  LSFKGCCSQSDFGTTSLKYLDLSFNGV 90

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 96.3 bits (240), Expect = 4e-23
 Identities = 49/190 (25%), Positives = 74/190 (38%), Gaps = 7/190 (3%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L L+ N +         S  +L  L LS  ++         +L+ LSTL L GN I    
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNL-IGTIPFQIGNLVGLQ 120
                GL +L  L      L+      IG L+ L+ LN++ N +    +P    NL  L+
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152

Query: 121 DLQDLSYNSLTGEIPAQLGKLTRLQ----SLNLSHNNLSGEIPASLSSMLSLVAVNLSYN 176
            L DLS N +       L  L ++     SL+LS N ++  I       + L  + L  N
Sbjct: 153 HL-DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNN 210

Query: 177 NLEGPLPDGS 186
                +    
Sbjct: 211 FDSLNVMKTC 220

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 95.6 bits (238), Expect = 8e-23
 Identities = 43/181 (23%), Positives = 64/181 (35%), Gaps = 6/181 (3%)

Query: 2   LGLAGNSIG--GKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISG 59
           L L+ N +   G         + L  L LS N +   + ++   L +L  L    +N+  
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQ 410

Query: 60  QIPEEI-GGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQI-GNLV 117
                +   L NL  LD+S              L  L +L ++ N+        I   L 
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470

Query: 118 GLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNN 177
            L  L DLS   L    P     L+ LQ LN++ N L          + SL  + L  N 
Sbjct: 471 NLTFL-DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529

Query: 178 L 178
            
Sbjct: 530 W 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 93.6 bits (233), Expect = 4e-22
 Identities = 49/206 (23%), Positives = 73/206 (35%), Gaps = 10/206 (4%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L L+   I         SLS L  L L+ N +          L+ L  L     N++   
Sbjct: 57  LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116

Query: 62  PEEIGGLLNLDSLDLSMNRL-SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQ 120
              IG L  L  L+++ N + S  +P     L +L  L+LS N +       +  L  + 
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176

Query: 121 DLQ---DLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNN 177
            L    DLS N +   I     K  RL  L L +N  S  +  +    L+     L  + 
Sbjct: 177 LLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLA----GLEVHR 231

Query: 178 LE-GPLPDGSVFSSSQSSAFTNNKDL 202
           L  G   +         SA     +L
Sbjct: 232 LVLGEFRNEGNLEKFDKSALEGLCNL 257

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 91.7 bits (228), Expect = 1e-21
 Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 8/172 (4%)

Query: 13  IPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLD 72
           IP  +        L LS N L         +  EL  L L+   I          L +L 
Sbjct: 22  IPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79

Query: 73  SLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLT- 131
           +L L+ N +          L  L+ L   + NL     F IG+L  L++L ++++N +  
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL-NVAHNLIQS 138

Query: 132 GEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSL----VAVNLSYNNLE 179
            ++P     LT L+ L+LS N +       L  +  +    ++++LS N + 
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 87.5 bits (217), Expect = 4e-20
 Identities = 40/165 (24%), Positives = 66/165 (40%), Gaps = 8/165 (4%)

Query: 19  SLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNIS--GQIPEEIGGLLNLDSLDL 76
            L  L  L  +SN+          +L  L  L L+ N +S  G   +   G  +L  LDL
Sbjct: 323 KLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380

Query: 77  SMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQI-GNLVGLQDLQDLSYNSLTGEIP 135
           S N +   + +    L  L  L+   +NL     F +  +L  L  L D+S+        
Sbjct: 381 SFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL-DISHTHTRVAFN 438

Query: 136 AQLGKLTRLQSLNLSHNNLSGEIPASLSSML-SLVAVNLSYNNLE 179
                L+ L+ L ++ N+        + + L +L  ++LS   LE
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 84.4 bits (209), Expect = 6e-19
 Identities = 39/156 (25%), Positives = 61/156 (39%), Gaps = 4/156 (2%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHI-GNLTELSTLSLNGNNISGQ 60
           L L+ N +   + +    L QL  L    + L       +  +L  L  L ++  +    
Sbjct: 378 LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436

Query: 61  IPEEIGGLLNLDSLDLSMNRLSGPIPNQI-GELRDLRILNLSQNNLIGTIPFQIGNLVGL 119
                 GL +L+ L ++ N         I  ELR+L  L+LSQ  L    P    +L  L
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496

Query: 120 QDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLS 155
           Q L +++ N L         +LT LQ + L  N   
Sbjct: 497 QVL-NMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 75.5 bits (186), Expect = 6e-16
 Identities = 47/213 (22%), Positives = 82/213 (38%), Gaps = 16/213 (7%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQL-SGEIPAHIGNLTELSTLSLNGNNISGQ 60
           L     ++       IG L  L EL+++ N + S ++P +  NLT L  L L+ N I   
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

Query: 61  IPEEIGGLLNLD----SLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIP-FQIGN 115
              ++  L  +     SLDLS+N ++  I     +   L  L L  N     +    I  
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQG 223

Query: 116 LVGLQDL-----QDLSYNSLTGEIPAQLGKLTRLQ--SLNLSHNNLSG-EIPASLSSMLS 167
           L GL+       +  +  +L     + L  L  L      L++ +    +I    + + +
Sbjct: 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283

Query: 168 LVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNK 200
           + + +L    +E  + D S     Q     N K
Sbjct: 284 VSSFSLVSVTIER-VKDFSYNFGWQHLELVNCK 315

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 74.8 bits (184), Expect = 1e-15
 Identities = 38/170 (22%), Positives = 62/170 (36%), Gaps = 10/170 (5%)

Query: 20  LSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMN 79
                 L L + +   + P     L  L  L+   N       E    L +L+ LDLS N
Sbjct: 303 NFGWQHLELVNCKFG-QFPTL--KLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRN 357

Query: 80  RLS--GPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPA- 136
            LS  G           L+ L+LS N +I T+      L  L+ L D  +++L       
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL-DFQHSNLKQMSEFS 415

Query: 137 QLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGS 186
               L  L  L++SH +         + + SL  + ++ N+ +       
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.0 bits (143), Expect = 3e-10
 Identities = 22/111 (19%), Positives = 38/111 (34%), Gaps = 3/111 (2%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHI-GNLTELSTLSLNGNNISGQ 60
           L ++              LS L  L ++ N         I   L  L+ L L+   +  Q
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-Q 484

Query: 61  IPEEI-GGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIP 110
           +       L +L  L+++ N+L          L  L+ + L  N    + P
Sbjct: 485 LSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 96.1 bits (239), Expect = 5e-23
 Identities = 42/184 (22%), Positives = 70/184 (38%), Gaps = 29/184 (15%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L +  + +   +P  + +   +  L +  N L+  +PA    L    TL ++GN ++  +
Sbjct: 45  LNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SLPALPPELR---TLEVSGNQLT-SL 96

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
           P    GLL L      +  L             L  L +  N L  ++P     L  L  
Sbjct: 97  PVLPPGLLELSIFSNPLTHLPALPSG-------LCKLWIFGNQLT-SLPVLPPGLQEL-- 146

Query: 122 LQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGP 181
              +S N L   +PA   +L     L   +N L+  +P   S +  L   ++S N L   
Sbjct: 147 --SVSDNQLA-SLPALPSELC---KLWAYNNQLT-SLPMLPSGLQEL---SVSDNQLAS- 195

Query: 182 LPDG 185
           LP  
Sbjct: 196 LPTL 199

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 90.3 bits (224), Expect = 5e-21
 Identities = 41/180 (22%), Positives = 74/180 (41%), Gaps = 28/180 (15%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L ++ N +   +PA      +L +L   +NQL+  +P     L ELS   ++ N ++  +
Sbjct: 146 LSVSDNQLA-SLPALPS---ELCKLWAYNNQLT-SLPMLPSGLQELS---VSDNQLA-SL 196

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIP---------NQIGEL----RDLRILNLSQNNLIGT 108
           P     L  L + +  +  L              N++  L     +L+ L +S  N + +
Sbjct: 197 PTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVS-GNRLTS 255

Query: 109 IPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSL 168
           +P     L+ L     +  N LT  +P  L  L+   ++NL  N LS     +L  + S 
Sbjct: 256 LPMLPSGLLSL----SVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSA 310

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 76.5 bits (188), Expect = 3e-16
 Identities = 33/174 (18%), Positives = 66/174 (37%), Gaps = 18/174 (10%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L ++ N +   +P       +L +L   +N+L+  +PA    L EL    ++GN ++  +
Sbjct: 186 LSVSDNQLA-SLPTLPS---ELYKLWAYNNRLT-SLPALPSGLKELI---VSGNRLT-SL 236

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
           P        L  L +S NRL+  +P     L  L +      N +  +P  + +L     
Sbjct: 237 PVLPS---ELKELMVSGNRLTS-LPMLPSGLLSLSV----YRNQLTRLPESLIHLSSETT 288

Query: 122 LQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSY 175
           + +L  N L+      L ++T     +           ++     +L      +
Sbjct: 289 V-NLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADW 341

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 68.0 bits (166), Expect = 2e-13
 Identities = 28/152 (18%), Positives = 55/152 (36%), Gaps = 12/152 (7%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L ++GN +   +P       +L EL +S N+L+  +P     L  LS   +  N ++ ++
Sbjct: 226 LIVSGNRLTS-LPVLPS---ELKELMVSGNRLT-SLPMLPSGLLSLS---VYRNQLT-RL 276

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
           PE +  L +  +++L  N LS      +   R++         +I             + 
Sbjct: 277 PESLIHLSSETTVNLEGNPLSERTLQAL---REITSAPGYSGPIIRFDMAGASAPRETRA 333

Query: 122 LQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNN 153
           L   + + L      +     R        N 
Sbjct: 334 LHLAAADWLVPAREGEPAPADRWHMFGQEDNA 365

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 63.0 bits (153), Expect = 1e-11
 Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 16/110 (14%)

Query: 70  NLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNS 129
               L++  + L+  +P+ +     +  L +  NNL  ++P     L  L    ++S N 
Sbjct: 41  GNAVLNVGESGLTT-LPDCLPA--HITTLVIPDNNLT-SLPALPPELRTL----EVSGNQ 92

Query: 130 LTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 179
           LT  +P     L  L   +    +L   +P+ L  +       +  N L 
Sbjct: 93  LT-SLPVLPPGLLELSIFSNPLTHLP-ALPSGLCKL------WIFGNQLT 134

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 95.3 bits (237), Expect = 8e-23
 Identities = 41/179 (22%), Positives = 76/179 (42%), Gaps = 12/179 (6%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
             +  +S+   + +   S   + EL LS N LS    A +   T+L  L+L+ N +    
Sbjct: 15  EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-- 72

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
             ++  L  L +LDL+ N +      ++     +  L+ + NN I  +        G ++
Sbjct: 73  TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAA-NNNISRVSC--SRGQGKKN 124

Query: 122 LQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSG-EIPASLSSMLSLVAVNLSYNNLE 179
           +  L+ N +T       G  +R+Q L+L  N +         +S  +L  +NL YN + 
Sbjct: 125 I-YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 93.4 bits (232), Expect = 3e-22
 Identities = 37/199 (18%), Positives = 65/199 (32%), Gaps = 14/199 (7%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L L  N +      E+     +  LH ++N +S  +            + L  N I+   
Sbjct: 85  LDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSC--SRGQGKKNIYLANNKITMLR 136

Query: 62  PEEIGGLLNLDSLDLSMNRLSG-PIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQ 120
             + G    +  LDL +N +              L  LNL  N +   +  Q+     L+
Sbjct: 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLK 194

Query: 121 DLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEG 180
            L DLS N L   +  +      +  ++L +N L   I  +L    +L   +L  N    
Sbjct: 195 TL-DLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC 251

Query: 181 PLPDGSVFSSSQSSAFTNN 199
                    + +       
Sbjct: 252 GTLRDFFSKNQRVQTVAKQ 270

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 91.8 bits (228), Expect = 1e-21
 Identities = 26/177 (14%), Positives = 73/177 (41%), Gaps = 12/177 (6%)

Query: 17  IGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDL 76
             + ++     ++ + L   + +   +   +  L L+GN +S     ++     L+ L+L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 77  SMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPA 136
           S N L   +   +  L  LR L+L+ N +      ++     ++ L   + N+++  +  
Sbjct: 66  SSNVLYETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSIETL-HAANNNIS-RVSC 116

Query: 137 QLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQS 193
              +    +++ L++N ++            +  ++L  N ++  +    + +SS +
Sbjct: 117 --SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT-VNFAELAASSDT 170

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 88.4 bits (219), Expect = 2e-20
 Identities = 44/198 (22%), Positives = 83/198 (41%), Gaps = 29/198 (14%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNIS--- 58
           L L+GN +     A++   ++L  L+LSSN L       + +L+ L TL LN N +    
Sbjct: 39  LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQELL 96

Query: 59  ---------------GQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQN 103
                           ++           ++ L+ N+++       G    ++ L+L  N
Sbjct: 97  VGPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154

Query: 104 NLIGTIPFQ--IGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPAS 161
             I T+ F     +   L+ L +L YN +  ++  Q+    +L++L+LS N L+  +   
Sbjct: 155 E-IDTVNFAELAASSDTLEHL-NLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPE 209

Query: 162 LSSMLSLVAVNLSYNNLE 179
             S   +  ++L  N L 
Sbjct: 210 FQSAAGVTWISLRNNKLV 227

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 73.7 bits (181), Expect = 2e-15
 Identities = 26/204 (12%), Positives = 61/204 (29%), Gaps = 30/204 (14%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L L  N I   +  ++   ++L  L LSSN+L+  +     +   ++ +SL  N +   I
Sbjct: 174 LNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LI 229

Query: 62  PEEIGGLLNLDSLDLSMNRLS-GPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQ 120
            + +    NL+  DL  N    G + +   + + ++ +       +     +   +  L 
Sbjct: 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

Query: 121 DLQDLSYNSLT-------------------------GEIPAQLGKLTRLQSLNLSHNNLS 155
                    L                            +  +     R + ++       
Sbjct: 290 HYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYR 349

Query: 156 GEIPASLSSMLSLVAVNLSYNNLE 179
             I        + + +      L+
Sbjct: 350 TVIDQVTLRKQAKITLEQKKKALD 373

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 69.5 bits (170), Expect = 6e-14
 Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 8/119 (6%)

Query: 61  IPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQ 120
           I E            ++ + L   + +      +++ L+LS N L       +     L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 121 DLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 179
            L +LS N L  E    L  L+ L++L+L++N +       L    S+  ++ + NN+ 
Sbjct: 62  LL-NLSSNVLY-ETLD-LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS 112

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 65.6 bits (160), Expect = 1e-12
 Identities = 22/204 (10%), Positives = 45/204 (22%), Gaps = 30/204 (14%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L L+ N +   +  E  S + +  + L +N+L   I   +     L    L GN      
Sbjct: 196 LDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGT 253

Query: 62  PEEIGGLLN-----------------------LDSLDLSMNRLSGPIPNQIGELRDLRIL 98
             +                                                  L  L+  
Sbjct: 254 LRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRK 313

Query: 99  NLS----QNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNL 154
             +    Q +    +  +  N    +++ D         I     +     +L      L
Sbjct: 314 EHALLSGQGSETERLECERENQARQREI-DALKEQYRTVIDQVTLRKQAKITLEQKKKAL 372

Query: 155 SGEIPASLSSMLSLVAVNLSYNNL 178
             ++     +   L          
Sbjct: 373 DEQVSNGRRAHAELDGTLQQAVGQ 396

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 27/158 (17%), Positives = 46/158 (29%), Gaps = 6/158 (3%)

Query: 1   MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ 60
           +L   G+    ++  E  + ++  E+     Q    I           TL      +  Q
Sbjct: 317 LLSGQGSETE-RLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQ 375

Query: 61  IPEEIGGLLNLDSL---DLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLV 117
           +         LD      +    L      Q   L+ LR +      +         N +
Sbjct: 376 VSNGRRAHAELDGTLQQAVGQIELQHATEEQ-SPLQLLRAIVKRYEEMYVEQQSVQNNAI 434

Query: 118 GLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLS 155
              D+       L  E  A+L KL     L L+  N +
Sbjct: 435 RDWDMYQHKETQLAEEN-ARLKKLNGEADLALASANAT 471

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 94.0 bits (234), Expect = 2e-22
 Identities = 36/181 (19%), Positives = 67/181 (37%), Gaps = 3/181 (1%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L L+ N I      ++ + + L  L L S++++        +L  L  L L+ N++S   
Sbjct: 31  LDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS 90

Query: 62  PEEIGGLLNLDSLDLSMNRLSG-PIPNQIGELRDLRILNLSQNNLIGTIPFQ-IGNLVGL 119
               G L +L  L+L  N      + +    L +L+ L +        I       L  L
Sbjct: 91  SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSL 150

Query: 120 QDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 179
            +L ++   SL       L  +  +  L L  +  +  +      + S+  + L   NL 
Sbjct: 151 NEL-EIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLA 209

Query: 180 G 180
            
Sbjct: 210 R 210

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 82.5 bits (204), Expect = 2e-18
 Identities = 45/192 (23%), Positives = 71/192 (36%), Gaps = 6/192 (3%)

Query: 12  KIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNL 71
            IP+ +   + +  L LS N+++      +     L  L L  + I+    +    L +L
Sbjct: 19  SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL 76

Query: 72  DSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIG-TIPFQIGNLVGLQDLQDLSYNSL 130
           + LDLS N LS    +  G L  L+ LNL  N      +     NL  LQ L  +     
Sbjct: 77  EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL-RIGNVET 135

Query: 131 TGEIPAQ-LGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPD-GSVF 188
             EI       LT L  L +   +L      SL S+  +  + L  +     L     + 
Sbjct: 136 FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADIL 195

Query: 189 SSSQSSAFTNNK 200
           SS +     +  
Sbjct: 196 SSVRYLELRDTN 207

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 78.6 bits (194), Expect = 5e-17
 Identities = 47/202 (23%), Positives = 72/202 (35%), Gaps = 32/202 (15%)

Query: 2   LGLAGNSIGGKIPAEIGS-LSQLVELHLSSNQLSGEI---PAHIGNLTELSTLSLNGNNI 57
           + +  + +   +P      L  L  L LS N +  E     A  G    L TL L+ N++
Sbjct: 315 ITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL 373

Query: 58  S--GQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGN 115
               +  E +  L NL SLD+S N    P+P+       +R LNLS   +   +      
Sbjct: 374 RSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI-RVVKT--CI 429

Query: 116 LVGLQDLQDLSYNSLTGEIPAQLGKLT-------------------RLQSLNLSHNNLSG 156
              L+ L D+S N+L       L +L                     L  + +S N L  
Sbjct: 430 PQTLEVL-DVSNNNLD-SFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKS 487

Query: 157 EIPASLSSMLSLVAVNLSYNNL 178
                   + SL  + L  N  
Sbjct: 488 VPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 74.8 bits (184), Expect = 9e-16
 Identities = 30/165 (18%), Positives = 60/165 (36%), Gaps = 7/165 (4%)

Query: 19  SLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSM 78
           +L+ L + + S + +  E+         +  L +    +   +      L  +  + +  
Sbjct: 262 TLNGLGDFNPSESDVVSELGKV--ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN 319

Query: 79  NRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQ--DLSYNSLT--GEI 134
           +++     +    L+ L  L+LS+N ++               LQ   LS N L    + 
Sbjct: 320 SKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKT 379

Query: 135 PAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 179
              L  L  L SL++S N     +P S      +  +NLS   + 
Sbjct: 380 GEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 70.9 bits (174), Expect = 2e-14
 Identities = 29/235 (12%), Positives = 74/235 (31%), Gaps = 42/235 (17%)

Query: 2   LGLAGNSIGGKIPAE-IGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ 60
           L +       +I       L+ L EL + +  L       + ++ ++  L+L+ +  +  
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL 187

Query: 61  IPEEIGGLLNLDSLDLSMNRLSG----------------------------------PIP 86
           +      L ++  L+L    L+                                    + 
Sbjct: 188 LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL 247

Query: 87  NQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQ-------DLSYNSLTGEIPAQLG 139
             I EL ++   + + N L    P +   +  L  ++        +    L  ++     
Sbjct: 248 RYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS 307

Query: 140 KLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSS 194
            L +++ + + ++ +     +    + SL  ++LS N +       S    +  S
Sbjct: 308 LLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS 362

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 53.6 bits (129), Expect = 1e-08
 Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 22/129 (17%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHI------------------GN 43
           L ++ N+    +P       ++  L+LSS  +   +   I                    
Sbjct: 392 LDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDSFSLF 449

Query: 44  LTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQN 103
           L  L  L ++ N +   +P+       L  + +S N+L          L  L+ + L  N
Sbjct: 450 LPRLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

Query: 104 NLIGTIPFQ 112
               + P  
Sbjct: 508 PWDCSCPRI 516

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 93.1 bits (232), Expect = 4e-22
 Identities = 55/201 (27%), Positives = 90/201 (44%), Gaps = 15/201 (7%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L L GN +  K    + SL+ L +L L++NQ+S   P  +  LT+L+ L L  N IS   
Sbjct: 226 LSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-- 279

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
              + GL  L +L+L+ N+L    P  I  L++L  L L  NN+    P  + +L  LQ 
Sbjct: 280 ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 335

Query: 122 LQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGP 181
           L     N ++    + L  LT +  L+  HN +S   P  L+++  +  + L+       
Sbjct: 336 L-FFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390

Query: 182 LPDGSVFSSSQSSAFTNNKDL 202
             +     S  ++       L
Sbjct: 391 PVNYKANVSIPNTVKNVTGAL 411

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 92.7 bits (231), Expect = 6e-22
 Identities = 56/182 (30%), Positives = 86/182 (47%), Gaps = 15/182 (8%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L    N I    P  +G L+ L EL L+ NQL       + +LT L+ L L  N IS   
Sbjct: 204 LIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA 259

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
           P  + GL  L  L L  N++S   P  +  L  L  L L++N L    P  I NL  L  
Sbjct: 260 P--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTY 313

Query: 122 LQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGP 181
           L  L +N+++   P  +  LT+LQ L   +N +S    +SL+++ ++  ++  +N +   
Sbjct: 314 L-TLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDL 368

Query: 182 LP 183
            P
Sbjct: 369 TP 370

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 90.8 bits (226), Expect = 2e-21
 Identities = 49/180 (27%), Positives = 73/180 (40%), Gaps = 13/180 (7%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L LA N I    P  +  L++L EL L +NQ+S   P  +  LT L+ L LN N +    
Sbjct: 248 LDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED-- 301

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
              I  L NL  L L  N +S   P  +  L  L+ L    N +  +    + NL  +  
Sbjct: 302 ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV--SDVSSLANLTNINW 357

Query: 122 LQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGP 181
           L    +N ++   P  L  LTR+  L L+    +       +++     V      L  P
Sbjct: 358 L-SAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAP 414

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 89.3 bits (222), Expect = 8e-21
 Identities = 53/179 (29%), Positives = 80/179 (44%), Gaps = 16/179 (8%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L L  N I    P  + +L+ L  L LSSN +S      +  LT L  LS   N ++   
Sbjct: 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFG-NQVTDLK 171

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
           P  +  L  L+ LD+S N++S      + +L +L  L  + N +    P  +G L  L +
Sbjct: 172 P--LANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITP--LGILTNLDE 225

Query: 122 LQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEG 180
           L  L+ N L       L  LT L  L+L++N +S   P  LS +  L  + L  N +  
Sbjct: 226 L-SLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 279

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 88.5 bits (220), Expect = 2e-20
 Identities = 52/199 (26%), Positives = 87/199 (43%), Gaps = 32/199 (16%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L      I  K    +  L+ L +++ S+NQL+   P  + NLT+L  + +N N I+   
Sbjct: 51  LQADRLGI--KSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-- 104

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQ--------- 112
              +  L NL  L L  N+++   P  +  L +L  L LS N +                
Sbjct: 105 ITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLS 162

Query: 113 ----------IGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASL 162
                     + NL  L+ L D+S N ++    + L KLT L+SL  ++N +S   P  L
Sbjct: 163 FGNQVTDLKPLANLTTLERL-DISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--L 217

Query: 163 SSMLSLVAVNLSYNNLEGP 181
             + +L  ++L+ N L+  
Sbjct: 218 GILTNLDELSLNGNQLKDI 236

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 87.7 bits (218), Expect = 3e-20
 Identities = 40/167 (23%), Positives = 73/167 (43%), Gaps = 14/167 (8%)

Query: 17  IGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDL 76
             +L++ ++  L    ++  +     +L +++TL  +   I     + +  L NL  ++ 
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQINF 75

Query: 77  SMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPA 136
           S N+L+   P  +  L  L  + ++ N +    P  + NL  L  L  L  N +T   P 
Sbjct: 76  SNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL-TLFNNQITDIDP- 129

Query: 137 QLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLP 183
            L  LT L  L LS N +S    ++LS + SL  ++   N +    P
Sbjct: 130 -LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQVTDLKP 172

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 85.4 bits (212), Expect = 2e-19
 Identities = 37/180 (20%), Positives = 74/180 (41%), Gaps = 16/180 (8%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
             L   ++   +      L Q+  L      +       +  L  L+ ++ + N ++   
Sbjct: 29  TVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQINFSNNQLTDIT 84

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
           P  +  L  L  + ++ N+++   P  +  L +L  L L  N +    P    NL  L  
Sbjct: 85  P--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPL--KNLTNLNR 138

Query: 122 LQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGP 181
           L +LS N+++      L  LT LQ L+   N ++   P  L+++ +L  +++S N +   
Sbjct: 139 L-ELSSNTISDISA--LSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSDI 192

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 68.5 bits (168), Expect = 1e-13
 Identities = 33/161 (20%), Positives = 61/161 (37%), Gaps = 10/161 (6%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L L  N+I    P  + SL++L  L   +N++S    + + NLT ++ LS   N IS   
Sbjct: 314 LTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLT 369

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
           P  +  L  +  L L+    +    N    +     +      LI   P  I +     +
Sbjct: 370 P--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--APATISDGGSYTE 425

Query: 122 LQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASL 162
             D+++N  +          ++  ++       SG +   L
Sbjct: 426 P-DITWNLPS-YTNEVSYTFSQPVTIGKGTTTFSGTVTQPL 464

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 6/86 (6%)

Query: 95  LRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNL 154
           L    ++Q+  I  I F    L        L   ++T  +      L ++ +L      +
Sbjct: 3   LGSATITQDTPINQI-FTDTALAEKMKT-VLGKTNVTDTVS--QTDLDQVTTLQADRLGI 58

Query: 155 SGEIPASLSSMLSLVAVNLSYNNLEG 180
                  +  + +L  +N S N L  
Sbjct: 59  K--SIDGVEYLNNLTQINFSNNQLTD 82

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 90.8 bits (226), Expect = 5e-22
 Identities = 47/181 (25%), Positives = 65/181 (35%), Gaps = 6/181 (3%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHI-GNLTELSTLSLNGNNISGQ 60
           + L GN I     A   +   L  L L SN L+  I A     L  L  L L+ N     
Sbjct: 37  IFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRS 95

Query: 61  IPEEI-GGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQI-GNLVG 118
           +      GL  L +L L    L    P     L  L+ L L  N  +  +P     +L  
Sbjct: 96  VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGN 154

Query: 119 LQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 178
           L  L  L  N ++         L  L  L L  N ++   P +   +  L+ + L  NNL
Sbjct: 155 LTHL-FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213

Query: 179 E 179
            
Sbjct: 214 S 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 79.3 bits (196), Expect = 8e-18
 Identities = 41/170 (24%), Positives = 64/170 (37%), Gaps = 10/170 (5%)

Query: 13  IPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEI-GGLLNL 71
           +P  I   +    + L  N++S    A       L+ L L+ N ++ +I      GL  L
Sbjct: 26  VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALL 82

Query: 72  DSLDLSMNRLSGPIPNQI-GELRDLRILNLSQNNLIGTIPFQI-GNLVGLQDLQDLSYNS 129
           + LDLS N     +       L  L  L+L     +  +   +   L  LQ L  L  N+
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLD-RCGLQELGPGLFRGLAALQYL-YLQDNA 140

Query: 130 LTGEIPAQ-LGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 178
           L   +P      L  L  L L  N +S     +   + SL  + L  N +
Sbjct: 141 LQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 77.7 bits (192), Expect = 3e-17
 Identities = 44/159 (27%), Positives = 62/159 (38%), Gaps = 12/159 (7%)

Query: 2   LGLAGNSIGGKIPAEI-GSLSQLVELHLSSNQLSGEIPAHI-GNLTELSTLSLNGNNISG 59
           L L+ N+    +       L +L  LHL    L  E+   +   L  L  L L  N +  
Sbjct: 85  LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ- 142

Query: 60  QIPEEI-GGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIP---FQIGN 115
            +P++    L NL  L L  NR+S         L  L  L L QN  +  +    F+  +
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR-VAHVHPHAFR--D 199

Query: 116 LVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNL 154
           L  L  L  L  N+L+      L  L  LQ L L+ N  
Sbjct: 200 LGRLMTL-YLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 60.0 bits (146), Expect = 5e-11
 Identities = 36/141 (25%), Positives = 53/141 (37%), Gaps = 10/141 (7%)

Query: 49  TLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGT 108
           T S     +   +P  I        + L  NR+S          R+L IL L  N  +  
Sbjct: 15  TTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LAR 70

Query: 109 IPFQI-GNLVGLQDLQDLSYNSLTGEIPAQ-LGKLTRLQSLNLSHNNLSGEIPA-SLSSM 165
           I       L  L+ L DLS N+    +       L RL +L+L    L  E+       +
Sbjct: 71  IDAAAFTGLALLEQL-DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGL 128

Query: 166 LSLVAVNLSYNNLEGPLPDGS 186
            +L  + L  N L+  LPD +
Sbjct: 129 AALQYLYLQDNALQA-LPDDT 148

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 92.1 bits (229), Expect = 7e-22
 Identities = 54/182 (29%), Positives = 84/182 (46%), Gaps = 10/182 (5%)

Query: 2   LGLAGNSIGGKIPAEI-GSLSQLVELHLSSNQLSGEIPAHI-GNLTELSTLSLNGNNISG 59
           L L  NSI  +I       L+ L  L L  N L+  IP+     L++L  L L  N I  
Sbjct: 104 LQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE- 160

Query: 60  QIPEEI-GGLLNLDSLDLS-MNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLV 117
            IP      + +L  LDL  + +L          L +L+ LNL   N+   +P  +  LV
Sbjct: 161 SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLV 218

Query: 118 GLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNN 177
           GL++L ++S N      P     L+ L+ L + ++ +S     +   + SLV +NL++NN
Sbjct: 219 GLEEL-EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN 277

Query: 178 LE 179
           L 
Sbjct: 278 LS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 87.1 bits (216), Expect = 5e-20
 Identities = 51/180 (28%), Positives = 76/180 (42%), Gaps = 8/180 (4%)

Query: 2   LGLAGNSIGGKIPAEI-GSLSQLVELHLSSNQLSGEIPAHI-GNLTELSTLSLNGNNISG 59
           L L  N +   IP+     LS+L EL L +N +   IP++    +  L  L L       
Sbjct: 128 LELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLE 185

Query: 60  QIPEEI-GGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVG 118
            I E    GL NL  L+L M  +   +PN +  L  L  L +S N+     P     L  
Sbjct: 186 YISEGAFEGLFNLKYLNLGMCNIKD-MPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSS 243

Query: 119 LQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 178
           L+ L  +  + ++         L  L  LNL+HNNLS       + +  LV ++L +N  
Sbjct: 244 LKKL-WVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 84.8 bits (210), Expect = 3e-19
 Identities = 45/169 (26%), Positives = 67/169 (39%), Gaps = 8/169 (4%)

Query: 13  IPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEI-GGLLNL 71
           +P  I   S    L+L  N +         +L  L  L L  N+I  QI      GL +L
Sbjct: 69  VPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASL 125

Query: 72  DSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQI-GNLVGLQDLQDLSYNSL 130
           ++L+L  N L+         L  LR L L  NN I +IP      +  L  L       L
Sbjct: 126 NTLELFDNWLTVIPSGAFEYLSKLRELWLR-NNPIESIPSYAFNRVPSLMRLDLGELKKL 184

Query: 131 TGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 179
                     L  L+ LNL   N+  ++P  L+ ++ L  + +S N+  
Sbjct: 185 EYISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFP 231

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.0 bits (99), Expect = 8e-05
 Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 4/86 (4%)

Query: 93  RDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHN 152
                +  ++  L   +P  I      + L +L  N++          L  L+ L L  N
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGI--PSNTRYL-NLMENNIQMIQADTFRHLHHLEVLQLGRN 109

Query: 153 NLSGEIPASLSSMLSLVAVNLSYNNL 178
           ++      + + + SL  + L  N L
Sbjct: 110 SIRQIEVGAFNGLASLNTLELFDNWL 135

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 92.2 bits (229), Expect = 1e-21
 Identities = 43/165 (26%), Positives = 63/165 (38%), Gaps = 7/165 (4%)

Query: 20  LSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEI-GGLLNLDSLDLSM 78
           L+    L LS N +     +    L +L  L L        I +E    L NL  LDL  
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 79  NRLSGPIPNQIGELRDLRILNLSQNNLIGTI--PFQIGNLVGLQDLQDLSYNSLTG-EIP 135
           +++    P+    L  L  L L    L   +       NL  L  L DLS N +    + 
Sbjct: 83  SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRL-DLSKNQIRSLYLH 141

Query: 136 AQLGKLTRLQSLNLSHNNLSGEIPASLSS--MLSLVAVNLSYNNL 178
              GKL  L+S++ S N +       L      +L   +L+ N+L
Sbjct: 142 PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSL 186

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 82.9 bits (205), Expect = 2e-18
 Identities = 44/201 (21%), Positives = 76/201 (37%), Gaps = 24/201 (11%)

Query: 2   LGLAGNSIGG-KIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLT--ELSTLSLNGNNIS 58
           L L+ N I    +    G L+ L  +  SSNQ+       +  L    LS  SL  N++ 
Sbjct: 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY 187

Query: 59  GQIPEEIGGLLN------LDSLDLSMNRLSGPIPN------------QIGELRDLRILNL 100
            ++  + G  +N      L+ LD+S N  +  I               +     +     
Sbjct: 188 SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF 247

Query: 101 SQNNL--IGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEI 158
             +N+       F       ++ L DLS+  +          L  L+ LNL++N ++   
Sbjct: 248 GFHNIKDPDQNTFAGLARSSVRHL-DLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA 306

Query: 159 PASLSSMLSLVAVNLSYNNLE 179
             +   + +L  +NLSYN L 
Sbjct: 307 DEAFYGLDNLQVLNLSYNLLG 327

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 80.6 bits (199), Expect = 1e-17
 Identities = 35/156 (22%), Positives = 56/156 (35%), Gaps = 9/156 (5%)

Query: 28  LSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPI-P 86
                L+ ++P     L     L L+ N I          L  L  L+L        I  
Sbjct: 11  YRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDK 66

Query: 87  NQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEI--PAQLGKLTRL 144
                L +LRIL+L  + +    P     L  L +L  L +  L+  +        L  L
Sbjct: 67  EAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL-RLYFCGLSDAVLKDGYFRNLKAL 125

Query: 145 QSLNLSHNNLSG-EIPASLSSMLSLVAVNLSYNNLE 179
             L+LS N +    +  S   + SL +++ S N + 
Sbjct: 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 80.2 bits (198), Expect = 1e-17
 Identities = 48/224 (21%), Positives = 81/224 (36%), Gaps = 33/224 (14%)

Query: 2   LGLAGNSIGGKIPAEI-GSLSQLVELHLSSNQLSGEIPAHI-GNLTELSTLSLNGNNISG 59
           L L        I  E   +L  L  L L S+++   +       L  L  L L    +S 
Sbjct: 53  LELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSD 111

Query: 60  QI--PEEIGGLLNLDSLDLSMNRLSG-PIPNQIGELRDLRILNLSQNNLIGTIPFQIGNL 116
            +        L  L  LDLS N++    +    G+L  L+ ++ S +N I  +      L
Sbjct: 112 AVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS-SNQIFLVCE--HEL 168

Query: 117 VGLQDLQ----DLSYNSLTGEIPAQLGKL------TRLQSLNLSHNNLSGEIPA------ 160
             LQ        L+ NSL   +    GK         L+ L++S N  + +I        
Sbjct: 169 EPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAI 228

Query: 161 ------SLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTN 198
                 SL     ++     ++N++   PD + F+    S+  +
Sbjct: 229 SKSQAFSLILAHHIMGAGFGFHNIKD--PDQNTFAGLARSSVRH 270

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 79.5 bits (196), Expect = 2e-17
 Identities = 49/196 (25%), Positives = 78/196 (39%), Gaps = 18/196 (9%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           + L  N I          L +L  L L  N L+      I  +  +  + L+GN +   +
Sbjct: 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLV-TL 396

Query: 62  PEEIGGLLNLDSLDLSMNRLSG-PIPNQIGELRDLRILNLSQNNLIGTIPFQI-GNLVGL 119
           P+     L  + + LS NRL    I   +  +  L+IL L+QN        Q       L
Sbjct: 397 PK---INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSL 453

Query: 120 QDLQDLSYNSLTGEIPAQL-----GKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLS 174
           + L  L  N L      +L       L+ LQ L L+HN L+   P   S + +L  ++L+
Sbjct: 454 EQL-FLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLN 512

Query: 175 YNNLEGPLPDGSVFSS 190
            N L   L    + ++
Sbjct: 513 SNRLTV-LSHNDLPAN 527

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 79.5 bits (196), Expect = 3e-17
 Identities = 44/172 (25%), Positives = 67/172 (38%), Gaps = 13/172 (7%)

Query: 20  LSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMN 79
            S +  L LS   +          L +L  L+L  N I+    E   GL NL  L+LS N
Sbjct: 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324

Query: 80  RLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLG 139
            L     +    L  +  ++L +N++          L  LQ L DL  N+LT      + 
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTL-DLRDNALT-----TIH 378

Query: 140 KLTRLQSLNLSHNNLSGEIPASLSSM-LSLVAVNLSYNNLEGPLPDGSVFSS 190
            +  +  + LS N L      +L  + L+   ++LS N LE  L        
Sbjct: 379 FIPSIPDIFLSGNKLV-----TLPKINLTANLIHLSENRLEN-LDILYFLLR 424

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 71.0 bits (174), Expect = 2e-14
 Identities = 33/146 (22%), Positives = 53/146 (36%), Gaps = 9/146 (6%)

Query: 48  STLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIG 107
                   N++ Q+P+    L   + L LS N +     +    L  L++L L       
Sbjct: 7   RIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL 62

Query: 108 TIPFQI-GNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEI--PASLSS 164
           TI  +   NL  L+ L DL  + +    P     L  L  L L    LS  +       +
Sbjct: 63  TIDKEAFRNLPNLRIL-DLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121

Query: 165 MLSLVAVNLSYNNLEGPLPDGSVFSS 190
           + +L  ++LS N +   L     F  
Sbjct: 122 LKALTRLDLSKNQIRS-LYLHPSFGK 146

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 65.2 bits (159), Expect = 2e-12
 Identities = 40/167 (23%), Positives = 62/167 (37%), Gaps = 13/167 (7%)

Query: 2   LGLAGNSIGG-KIPAEIGSLSQLVELHLSSNQLSG-EIPAHIGNLTELSTLSLNGNNISG 59
           + L+ N +    I   +  +  L  L L+ N+ S             L  L L  N +  
Sbjct: 406 IHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQL 465

Query: 60  QIPEEI-----GGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIG 114
               E+      GL +L  L L+ N L+   P     L  LR L+L+ +N +  +     
Sbjct: 466 AWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLN-SNRLTVLSHND- 523

Query: 115 NLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPAS 161
               L+ L D+S N L    P        L  L+++HN    E   S
Sbjct: 524 LPANLEIL-DISRNQLLAPNP---DVFVSLSVLDITHNKFICECELS 566

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 59.4 bits (144), Expect = 2e-10
 Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 2/103 (1%)

Query: 92  LRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQ-LGKLTRLQSLNLS 150
           L     L LS N +          L  LQ L +L        I  +    L  L+ L+L 
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLL-ELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 151 HNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQS 193
            + +    P +   +  L  + L +  L   +     F + ++
Sbjct: 82  SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA 124

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 91.6 bits (227), Expect = 2e-21
 Identities = 41/218 (18%), Positives = 75/218 (34%), Gaps = 35/218 (16%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L +  N++   +P    SL     L    N+LS  +P    +L  L    ++ N ++  +
Sbjct: 85  LEITQNALI-SLPELPASLE---YLDACDNRLS-TLPELPASLKHLD---VDNNQLT-ML 135

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDL-----------------RILNLSQNN 104
           PE       L+ ++   N+L+  +P     L  L                   L++S  N
Sbjct: 136 PELPA---LLEYINADNNQLTM-LPELPTSLEVLSVRNNQLTFLPELPESLEALDVS-TN 190

Query: 105 LIGTIPFQIGNLVGLQDLQ---DLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPAS 161
           L+ ++P         ++ +       N +T  IP  +  L    ++ L  N LS  I  S
Sbjct: 191 LLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRES 249

Query: 162 LSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNN 199
           LS   +    +             +      + A T  
Sbjct: 250 LSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAW 287

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 76.5 bits (188), Expect = 3e-16
 Identities = 35/177 (19%), Positives = 66/177 (37%), Gaps = 36/177 (20%)

Query: 28  LSSNQLSG---EIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGP 84
              N +SG   +  +      + +    N N     + E +  +     L L+   LS  
Sbjct: 17  SFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLSS- 73

Query: 85  IPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRL 144
           +P+ +     + +L ++QN LI ++P    +L  L    D   N L+  +P     L  L
Sbjct: 74  LPDNLP--PQITVLEITQNALI-SLPELPASLEYL----DACDNRLS-TLPELPASLKHL 125

Query: 145 -----------------QSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPD 184
                            + +N  +N L+  +P   +S+  L   ++  N L   LP+
Sbjct: 126 DVDNNQLTMLPELPALLEYINADNNQLT-MLPELPTSLEVL---SVRNNQLTF-LPE 177

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 60.0 bits (145), Expect = 1e-10
 Identities = 29/158 (18%), Positives = 43/158 (27%), Gaps = 13/158 (8%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELST----LSLNGNNI 57
           L +  N +   +P    SL     L +S+N L   +PA                   N I
Sbjct: 165 LSVRNNQLT-FLPELPESLE---ALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRI 219

Query: 58  SGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLV 117
           +  IPE I  L    ++ L  N LS  I      L             I           
Sbjct: 220 T-HIPENILSLDPTCTIILEDNPLSSRIRE---SLSQQTAQPDYHGPRIYFSMSDGQQNT 275

Query: 118 GLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLS 155
             + L D           + + ++          N  S
Sbjct: 276 LHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFS 313

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 39.6 bits (92), Expect = 6e-04
 Identities = 30/178 (16%), Positives = 51/178 (28%), Gaps = 9/178 (5%)

Query: 1   MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ 60
                 N I   IP  I SL     + L  N LS  I   +   T       +G  I   
Sbjct: 211 FFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPD--YHGPRIYFS 267

Query: 61  IPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQ 120
           + +     L+    D           + + ++          N         +  L    
Sbjct: 268 MSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAF----LDRLSDTV 323

Query: 121 DLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 178
             ++ S      ++ A L KL+    L      ++ +   S    ++L   NL    L
Sbjct: 324 SARNTS--GFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLL 379

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 89.3 bits (222), Expect = 5e-21
 Identities = 41/178 (23%), Positives = 80/178 (44%), Gaps = 16/178 (8%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
             ++ N +     + +     + EL  S N ++  +   +    EL+ L L  NN++   
Sbjct: 191 ANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLT-DT 241

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
              +     L  +DLS N L   + +   +++ L  L +S NN +  +      +  L+ 
Sbjct: 242 AW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS-NNRLVALNLYGQPIPTLKV 299

Query: 122 LQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 179
           L DLS+N L   +     +  RL++L L HN++   +   LS+  +L  + LS+N+ +
Sbjct: 300 L-DLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 82.4 bits (204), Expect = 1e-18
 Identities = 43/181 (23%), Positives = 74/181 (40%), Gaps = 18/181 (9%)

Query: 1   MLGLAGNSIGGKIPAEI-GSLSQLVELHLSSNQLSGEIPAHI-GNLTELSTLSLNGNNIS 58
           +L L  N +   +P  I  +  +L  L +S+N L   I        T L  L L+ N ++
Sbjct: 121 VLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT 178

Query: 59  GQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVG 118
             +   +  + +L   ++S N LS      +     +  L+ S N+ I  +   +   V 
Sbjct: 179 -HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNS-INVVRGPV--NVE 227

Query: 119 LQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 178
           L  L  L +N+LT +    L     L  ++LS+N L   +      M  L  + +S N L
Sbjct: 228 LTIL-KLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284

Query: 179 E 179
            
Sbjct: 285 V 285

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 81.2 bits (201), Expect = 4e-18
 Identities = 28/169 (16%), Positives = 61/169 (36%), Gaps = 5/169 (2%)

Query: 13  IPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLD 72
           I + +       ++H+               L     ++   + +       +     ++
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 73  SLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQI-GNLVGLQDLQDLSYNSLT 131
            L+L+  ++             ++ L +   N I  +P  +  N+  L  L  L  N L+
Sbjct: 73  LLNLNDLQIEEIDTYAFAYAHTIQKLYMG-FNAIRYLPPHVFQNVPLLTVL-VLERNDLS 130

Query: 132 GEIPAQL-GKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 179
             +P  +     +L +L++S+NNL      +  +  SL  + LS N L 
Sbjct: 131 -SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 80.5 bits (199), Expect = 8e-18
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 8/180 (4%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           + +   +       E  +L+    +   ++ +     A + +  ++  L+LN   I  +I
Sbjct: 26  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EI 84

Query: 62  PEEI-GGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQI-GNLVGL 119
                     +  L +  N +    P+    +  L +L L   N + ++P  I  N   L
Sbjct: 85  DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE-RNDLSSLPRGIFHNTPKL 143

Query: 120 QDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 179
             L  +S N+L           T LQ+L LS N L+  +   LS + SL   N+SYN L 
Sbjct: 144 TTL-SMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS 199

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 85.8 bits (213), Expect = 7e-21
 Identities = 28/141 (19%), Positives = 58/141 (41%), Gaps = 6/141 (4%)

Query: 17  IGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDL 76
           I     + +L +++   +   P  I  L+ L  L + G +++      + GL +L  LD+
Sbjct: 62  IEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119

Query: 77  SMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPA 136
           S +     I  +I  L  +  ++LS N  I  I   +  L  L+ L ++ ++ +      
Sbjct: 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSL-NIQFDGVHDYRG- 176

Query: 137 QLGKLTRLQSLNLSHNNLSGE 157
            +    +L  L      + G+
Sbjct: 177 -IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 80.0 bits (198), Expect = 1e-18
 Identities = 31/163 (19%), Positives = 64/163 (39%), Gaps = 8/163 (4%)

Query: 16  EIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLD 75
               ++ L  + L++  ++      I     +  L++N  + +      I GL NL+ L 
Sbjct: 39  TEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATN--YNPISGLSNLERLR 94

Query: 76  LSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIP 135
           +    ++      +  L  L +L++S +    +I  +I  L  +  + DLSYN    +I 
Sbjct: 95  IMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI-DLSYNGAITDIM 153

Query: 136 AQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 178
             L  L  L+SLN+  + +       +     L  +      +
Sbjct: 154 P-LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 74.6 bits (184), Expect = 1e-16
 Identities = 27/160 (16%), Positives = 66/160 (41%), Gaps = 9/160 (5%)

Query: 19  SLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSM 78
           +    +   L  +  +         +  L+ ++L   N++      I    N+  L ++ 
Sbjct: 21  TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINN 75

Query: 79  NRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQL 138
              +   P  I  L +L  L +   ++       +  L  L  L D+S+++    I  ++
Sbjct: 76  IHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL-DISHSAHDDSILTKI 132

Query: 139 GKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 178
             L ++ S++LS+N    +I   L ++  L ++N+ ++ +
Sbjct: 133 NTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGV 171

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.3 bits (113), Expect = 6e-07
 Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 3/83 (3%)

Query: 1   MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ 60
           +L ++ ++    I  +I +L ++  + LS N    +I   +  L EL +L++  + +   
Sbjct: 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDY 174

Query: 61  IPEEIGGLLNLDSLDLSMNRLSG 83
               I     L+ L      + G
Sbjct: 175 RG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 17/110 (15%), Positives = 45/110 (40%), Gaps = 5/110 (4%)

Query: 70  NLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNS 129
              +    +   S        ++  L  + L+  N +  +   I     ++DL  ++   
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNSLTYITLANIN-VTDLTG-IEYAHNIKDL-TINNIH 77

Query: 130 LTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 179
            T   P  +  L+ L+ L +   +++ +   +LS + SL  +++S++  +
Sbjct: 78  ATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 85.1 bits (211), Expect = 1e-19
 Identities = 46/188 (24%), Positives = 84/188 (44%), Gaps = 17/188 (9%)

Query: 2   LGLAGNSIGGKIPAEI-GSLSQLVELHLSSNQL-SGEIPAHI-GNLTELSTLSLNGNNIS 58
           L +  N I  K+   +   L+Q++ + L +N L S  I       + +LS + +   NI+
Sbjct: 126 LRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184

Query: 59  GQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVG 118
             IP+  G   +L  L L  N+++      +  L +L  L LS N++       + N   
Sbjct: 185 -TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 241

Query: 119 LQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPAS-------LSSMLSLVAV 171
           L++L  L+ N L  ++P  L     +Q + L +NN+S  I ++        +   S   V
Sbjct: 242 LREL-HLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGV 298

Query: 172 NLSYNNLE 179
           +L  N ++
Sbjct: 299 SLFSNPVQ 306

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 82.7 bits (205), Expect = 7e-19
 Identities = 55/183 (30%), Positives = 86/183 (46%), Gaps = 15/183 (8%)

Query: 2   LGLAGNSIGGKIPAEIGS-LSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ 60
           L L  N I  KI     + L +L  L+LS NQL  E+P  +     L  L ++ N I+ +
Sbjct: 81  LILINNKIS-KISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEIT-K 135

Query: 61  IPEEI-GGLLNLDSLDLSMNRL-SGPIPNQI-GELRDLRILNLSQNNLIGTIPFQIGNLV 117
           + + +  GL  +  ++L  N L S  I N     ++ L  + ++  N I TIP   G   
Sbjct: 136 VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQ--GLPP 192

Query: 118 GLQDLQDLSYNSLTGEIPAQ-LGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYN 176
            L +L  L  N +T ++ A  L  L  L  L LS N++S     SL++   L  ++L+ N
Sbjct: 193 SLTEL-HLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250

Query: 177 NLE 179
            L 
Sbjct: 251 KLV 253

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 80.8 bits (200), Expect = 3e-18
 Identities = 44/189 (23%), Positives = 86/189 (45%), Gaps = 14/189 (7%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHI-GNLTELSTLSLNGNNISGQ 60
           L L  N I      +  +L  L  L L +N++S +I       L +L  L L+ N +  +
Sbjct: 57  LDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLK-E 114

Query: 61  IPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQ 120
           +PE++     L  L +  N ++    +    L  + ++ L  N  + +   + G   G++
Sbjct: 115 LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMK 171

Query: 121 DLQ--DLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPA-SLSSMLSLVAVNLSYNN 177
            L    ++  ++T  IP  L     L  L+L  N ++ ++ A SL  + +L  + LS+N+
Sbjct: 172 KLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNS 227

Query: 178 LEGPLPDGS 186
           +   + +GS
Sbjct: 228 ISA-VDNGS 235

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 74.3 bits (183), Expect = 7e-16
 Identities = 37/159 (23%), Positives = 67/159 (42%), Gaps = 13/159 (8%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHI-GNLTELSTLSLNGNNISGQ 60
           + +A  +I   IP   G    L ELHL  N+++ ++ A     L  L+ L L+ N+IS  
Sbjct: 176 IRIADTNIT-TIPQ--GLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAV 231

Query: 61  IPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNL--IGTIPF-QIGNLV 117
               +    +L  L L+ N+L   +P  + + + ++++ L  NN+  IG+  F   G   
Sbjct: 232 DNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNT 290

Query: 118 GLQDLQ--DLSYNSLT-GEIPAQL-GKLTRLQSLNLSHN 152
                    L  N +   EI       +    ++ L + 
Sbjct: 291 KKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 66.6 bits (163), Expect = 4e-13
 Identities = 35/159 (22%), Positives = 60/159 (37%), Gaps = 9/159 (5%)

Query: 22  QLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL 81
            L  +  S   L  ++P  +    + + L L  N I+     +   L NL +L L  N++
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 82  SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKL 141
           S   P     L  L  L LS  N +  +P        LQ+L  +  N +T    +    L
Sbjct: 89  SKISPGAFAPLVKLERLYLS-KNQLKELPE--KMPKTLQEL-RVHENEITKVRKSVFNGL 144

Query: 142 TRLQSLNLSHNNLSGEI--PASLSSMLSLVAVNLSYNNL 178
            ++  + L  N L        +   M  L  + ++  N+
Sbjct: 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 59.6 bits (145), Expect = 1e-10
 Identities = 33/143 (23%), Positives = 62/143 (43%), Gaps = 10/143 (6%)

Query: 46  ELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNL 105
            L  +  +   +  ++P+++    +   LDL  N+++         L++L  L L  NN 
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILI-NNK 87

Query: 106 IGTIPFQI-GNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSS 164
           I  I       LV L+ L  LS N L  E+P ++     LQ L +  N ++    +  + 
Sbjct: 88  ISKISPGAFAPLVKLERL-YLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNG 143

Query: 165 MLSLVAVNLSYNNL-EGPLPDGS 186
           +  ++ V L  N L    + +G+
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGA 166

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 83.8 bits (207), Expect = 2e-19
 Identities = 41/177 (23%), Positives = 66/177 (37%), Gaps = 13/177 (7%)

Query: 16  EIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLL------ 69
            +  +S L EL L + +++G  P  +   T      LN  N+S    +     L      
Sbjct: 90  RVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKP 149

Query: 70  NLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQI----GNLVGLQ--DLQ 123
            L  L ++          Q+     L  L+LS N  +G               LQ   L+
Sbjct: 150 GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR 209

Query: 124 DLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSML-SLVAVNLSYNNLE 179
           +    + +G   A      +LQ L+LSHN+L     A        L ++NLS+  L+
Sbjct: 210 NAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 74.5 bits (183), Expect = 5e-16
 Identities = 48/215 (22%), Positives = 72/215 (33%), Gaps = 38/215 (17%)

Query: 2   LGLAGNSIGGKIPAEIGSLS--QLVELHLSSNQLSGEIPAHIGNL-----TELSTLSLNG 54
           L L    + G  P  +   +   L  L+L +   +    A +  L       L  LS+  
Sbjct: 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKVLSIAQ 158

Query: 55  NNISGQIPEEIGGLLNLDSLDLSMNRLSGPI-------PNQIGELRDLRILNLSQNNLIG 107
            +      E++     L +LDLS N   G         P +   L+ L + N       G
Sbjct: 159 AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG 218

Query: 108 TIPFQIGNLVGLQDLQDLSYNSLTGEIPAQL-GKLTRLQSLNLSHNNLSGEIPASLSSML 166
                    V LQ L DLS+NSL     A      ++L SLNLS   L  ++P  L + L
Sbjct: 219 VCSALAAARVQLQGL-DLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPAKL 276

Query: 167 --------------------SLVAVNLSYNNLEGP 181
                                +  ++L  N     
Sbjct: 277 SVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 74.2 bits (182), Expect = 7e-16
 Identities = 39/189 (20%), Positives = 71/189 (37%), Gaps = 17/189 (8%)

Query: 14  PAEIGSLSQLVELHLSSNQLSGEIPAH---IGNLTELSTLSLNGNNISGQIPEEIGGL-- 68
             +I     L  L + + ++   I      +  ++ L  L+L    ++G  P  +     
Sbjct: 61  FTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG 120

Query: 69  LNLDSLDLSMNRLSGPIPN----QIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQD 124
            +L+ L+L     +         Q      L++L+++Q + +     Q+     L  L D
Sbjct: 121 PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTL-D 179

Query: 125 LSYNSLTGEIP----AQLGKLTRLQSLNLSHNN---LSGEIPASLSSMLSLVAVNLSYNN 177
           LS N   GE          K   LQ L L +      SG   A  ++ + L  ++LS+N+
Sbjct: 180 LSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS 239

Query: 178 LEGPLPDGS 186
           L       S
Sbjct: 240 LRDAAGAPS 248

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 50.7 bits (121), Expect = 1e-07
 Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 6/108 (5%)

Query: 1   MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHI-GNLTELSTLSLNGNNISG 59
           +      +  G   A   +  QL  L LS N L     A      ++L++L+L+   +  
Sbjct: 208 LRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK- 266

Query: 60  QIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIG 107
           Q+P+ +     L  LDLS NRL    P    EL  +  L+L  N  + 
Sbjct: 267 QVPKGLPA--KLSVLDLSYNRLDR-NP-SPDELPQVGNLSLKGNPFLD 310

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 83.1 bits (206), Expect = 2e-19
 Identities = 57/195 (29%), Positives = 84/195 (43%), Gaps = 20/195 (10%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHI-GNLTELSTLSLNGNNISGQ 60
           L L+ N +         S  +L  L LS  ++   I      +L+ LSTL L GN I   
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-S 90

Query: 61  IPEEI-GGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIP----FQIGN 115
           +      GL +L  L      L+      IG L+ L+ LN++ +NLI +      F   N
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA-HNLIQSFKLPEYFS--N 147

Query: 116 LVGLQDLQDLSYNSLTGEIPAQ----LGKLTRLQ-SLNLSHNNLSGEIPASLSSMLSLVA 170
           L  L+ L DLS N +   I       L ++  L  SL+LS N ++  I       + L  
Sbjct: 148 LTNLEHL-DLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKE 204

Query: 171 VNLSYNNLEGPLPDG 185
           + L  N L+  +PDG
Sbjct: 205 LALDTNQLKS-VPDG 218

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 77.3 bits (191), Expect = 3e-17
 Identities = 49/182 (26%), Positives = 69/182 (37%), Gaps = 11/182 (6%)

Query: 2   LGLAGNSIGGKIPAEI-GSLSQLVELHLSSNQLSGEIPAHI-GNLTELSTLSLNGNNISG 59
           L L+   I   I      SLS L  L L+ N +   +       L+ L  L     N++ 
Sbjct: 57  LDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLAS 114

Query: 60  QIPEEIGGLLNLDSLDLSMNRL-SGPIPNQIGELRDLRILNLSQNNLIGTIPFQI-GNLV 117
                IG L  L  L+++ N + S  +P     L +L  L+LS N  I +I       L 
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLH 173

Query: 118 GLQDLQ---DLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLS 174
            +  L    DLS N +   I     K  RL+ L L  N L          + SL  + L 
Sbjct: 174 QMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 232

Query: 175 YN 176
            N
Sbjct: 233 TN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 70.0 bits (172), Expect = 2e-14
 Identities = 43/182 (23%), Positives = 75/182 (41%), Gaps = 15/182 (8%)

Query: 13  IPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEI-GGLLNL 71
           IP  +   ++   L LS N L         +  EL  L L+   I   I +     L +L
Sbjct: 22  IPDNLPFSTK--NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHL 78

Query: 72  DSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNL--IGTIPFQIGNLVGLQDLQDLSYNS 129
            +L L+ N +          L  L+ L   + NL  +   P   G+L  L++L ++++N 
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI--GHLKTLKEL-NVAHNL 135

Query: 130 LTG-EIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVN----LSYNNLEGPLPD 184
           +   ++P     LT L+ L+LS N +       L  +  +  +N    LS N +   +  
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQP 194

Query: 185 GS 186
           G+
Sbjct: 195 GA 196

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 12/126 (9%)

Query: 70  NLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIP---FQIGNLVGLQDLQDLS 126
           +  +LDLS N L            +L++L+LS+   I TI    +Q  +L  L  L  L+
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQ--SLSHLSTL-ILT 84

Query: 127 YNSLTGEIPAQL-GKLTRLQSLNLSHNNLSGEIPASLSSML-SLVAVNLSYNNLEGPLPD 184
            N +   +       L+ LQ L     NL+  +       L +L  +N+++N ++     
Sbjct: 85  GNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQS-FKL 141

Query: 185 GSVFSS 190
              FS+
Sbjct: 142 PEYFSN 147

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 85.0 bits (210), Expect = 3e-19
 Identities = 41/178 (23%), Positives = 80/178 (44%), Gaps = 16/178 (8%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
             ++ N +     + +     + EL  S N ++  +   +    EL+ L L  NN++   
Sbjct: 197 ANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLT-DT 247

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
              +     L  +DLS N L   + +   +++ L  L +S NN +  +      +  L+ 
Sbjct: 248 AW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS-NNRLVALNLYGQPIPTLKV 305

Query: 122 LQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 179
           L DLS+N L   +     +  RL++L L HN++   +   LS+  +L  + LS+N+ +
Sbjct: 306 L-DLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 80.4 bits (198), Expect = 1e-17
 Identities = 43/181 (23%), Positives = 74/181 (40%), Gaps = 18/181 (9%)

Query: 1   MLGLAGNSIGGKIPAEI-GSLSQLVELHLSSNQLSGEIPAHI-GNLTELSTLSLNGNNIS 58
           +L L  N +   +P  I  +  +L  L +S+N L   I        T L  L L+ N ++
Sbjct: 127 VLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT 184

Query: 59  GQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVG 118
             +   +  + +L   ++S N LS      +     +  L+ S +N I  +   +   V 
Sbjct: 185 -HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDAS-HNSINVVRGPV--NVE 233

Query: 119 LQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 178
           L  L  L +N+LT +    L     L  ++LS+N L   +      M  L  + +S N L
Sbjct: 234 LTIL-KLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290

Query: 179 E 179
            
Sbjct: 291 V 291

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 77.3 bits (190), Expect = 2e-16
 Identities = 41/201 (20%), Positives = 80/201 (39%), Gaps = 11/201 (5%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L  + NSI   +        +L  L L  N L+ +    + N   L  + L+ N +   +
Sbjct: 216 LDASHNSIN-VVRG--PVNVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIM 270

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
                 +  L+ L +S NRL   +      +  L++L+LS +N +  +         L++
Sbjct: 271 YHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLS-HNHLLHVERNQPQFDRLEN 328

Query: 122 LQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGP 181
           L  L +NS+   +   L     L++L LSHN+       +L   ++  AV+ +  + +  
Sbjct: 329 L-YLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKID 384

Query: 182 LPDGSVFSSSQSSAFTNNKDL 202
                     +S     ++ L
Sbjct: 385 YQLEHGLCCKESDKPYLDRLL 405

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 76.5 bits (188), Expect = 2e-16
 Identities = 28/169 (16%), Positives = 61/169 (36%), Gaps = 5/169 (2%)

Query: 13  IPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLD 72
           I + +       ++H+               L     ++   + +       +     ++
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 78

Query: 73  SLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQI-GNLVGLQDLQDLSYNSLT 131
            L+L+  ++             ++ L +   N I  +P  +  N+  L  L  L  N L+
Sbjct: 79  LLNLNDLQIEEIDTYAFAYAHTIQKLYMG-FNAIRYLPPHVFQNVPLLTVL-VLERNDLS 136

Query: 132 GEIPAQL-GKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 179
             +P  +     +L +L++S+NNL      +  +  SL  + LS N L 
Sbjct: 137 -SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 64.2 bits (156), Expect = 4e-12
 Identities = 24/152 (15%), Positives = 50/152 (32%), Gaps = 1/152 (0%)

Query: 28  LSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPN 87
                    I +++        + ++          E   L N   +    + +      
Sbjct: 10  KPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAA 69

Query: 88  QIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSL 147
            +   R + +LNL+   +     +       +Q L  + +N++    P     +  L  L
Sbjct: 70  LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKL-YMGFNAIRYLPPHVFQNVPLLTVL 128

Query: 148 NLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 179
            L  N+LS        +   L  +++S NNLE
Sbjct: 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE 160

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 82.5 bits (204), Expect = 5e-19
 Identities = 53/179 (29%), Positives = 79/179 (44%), Gaps = 13/179 (7%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L L+ N +     A +   ++L +L+L   +L+ ++    G L  L TL L+ N +   +
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSHNQLQ-SL 92

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIP---FQIGNLVG 118
           P     L  L  LD+S NRL+      +  L +L+ L L  N L  T+P           
Sbjct: 93  PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL-KTLPPGLLT--PTPK 149

Query: 119 LQDLQDLSYNSLTGEIPAQL-GKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYN 176
           L+ L  L+ N+LT E+PA L   L  L +L L  N+L   IP        L    L  N
Sbjct: 150 LEKL-SLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 74.8 bits (184), Expect = 4e-16
 Identities = 53/178 (29%), Positives = 87/178 (48%), Gaps = 17/178 (9%)

Query: 13  IPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLD 72
           +P ++        LHLS N L     A +   T L+ L+L+   +     +  G L  L 
Sbjct: 25  LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLG 80

Query: 73  SLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIP---FQIGNLVGLQDLQDLSYNS 129
           +LDLS N+L   +P     L  L +L++S  N + ++P    +   L  LQ+L  L  N 
Sbjct: 81  TLDLSHNQLQS-LPLLGQTLPALTVLDVS-FNRLTSLPLGALR--GLGELQEL-YLKGNE 135

Query: 130 LTGEIPAQL-GKLTRLQSLNLSHNNLSGEIPASL-SSMLSLVAVNLSYNNLEGPLPDG 185
           L   +P  L     +L+ L+L++NNL+ E+PA L + + +L  + L  N+L   +P G
Sbjct: 136 LK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKG 190

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 82.2 bits (203), Expect = 2e-18
 Identities = 46/165 (27%), Positives = 72/165 (43%), Gaps = 9/165 (5%)

Query: 18  GSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIG---GLLNLDSL 74
             +S  + L  S+N L+  +  + G+LTEL TL L  N +  ++ +       + +L  L
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQL 379

Query: 75  DLSMNRL-SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGE 133
           D+S N +            + L  LN+S N L  TI   +     ++ L DL  N +   
Sbjct: 380 DISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVL-DLHSNKIK-S 435

Query: 134 IPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 178
           IP Q+ KL  LQ LN++ N L          + SL  + L  N  
Sbjct: 436 IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 70.3 bits (172), Expect = 3e-14
 Identities = 37/181 (20%), Positives = 63/181 (34%), Gaps = 6/181 (3%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           + L G            SL  L    + S+             + ++  +   +      
Sbjct: 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVH 316

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNL--IGTIPFQIGNLVGL 119
                 +     LD S N L+  +    G L +L  L L  N L  +  I      +  L
Sbjct: 317 MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL 376

Query: 120 QDLQDLSYNSLTGEIPAQL-GKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 178
           Q L D+S NS++ +           L SLN+S N L+  I   L   + +  ++L  N +
Sbjct: 377 QQL-DISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKV--LDLHSNKI 433

Query: 179 E 179
           +
Sbjct: 434 K 434

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 67.6 bits (165), Expect = 2e-13
 Identities = 45/213 (21%), Positives = 78/213 (36%), Gaps = 8/213 (3%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L ++ N I     ++I SLS+L  L +S N++     +      EL  L L+ N +   I
Sbjct: 26  LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-I 84

Query: 62  PEEIGGLLNLDSLDLSMNRL-SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQ 120
                  +NL  LDLS N   + PI  + G +  L+ L LS  +L  +    I +L   +
Sbjct: 85  S--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISK 142

Query: 121 DLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEG 180
            L  L       E       L    + +L     + +    +  +      NL  +N++ 
Sbjct: 143 VLLVLGETYGEKE---DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKC 199

Query: 181 PLPDGSVFSSSQSSAFTNNKDLCGKVQGLRPCN 213
            + + +  S   S       +       L    
Sbjct: 200 -VLEDNKCSYFLSILAKLQTNPKLSNLTLNNIE 231

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 64.9 bits (158), Expect = 2e-12
 Identities = 44/218 (20%), Positives = 77/218 (35%), Gaps = 10/218 (4%)

Query: 12  KIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNL 71
            +P ++   +    L++S N +S    + I +L++L  L ++ N I             L
Sbjct: 14  HVPKDLSQKTT--ILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQEL 71

Query: 72  DSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQ--IGNLVGLQDLQDLSYNS 129
           + LDLS N+L   I        +L+ L+LS N     +P     GN+  L+ L  LS   
Sbjct: 72  EYLDLSHNKLVK-IS--CHPTVNLKHLDLSFNAF-DALPICKEFGNMSQLKFL-GLSTTH 126

Query: 130 LTGEIPAQLGKLTRLQ-SLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVF 188
           L       +  L   +  L L       E P  L    +     +   N E         
Sbjct: 127 LEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSV 186

Query: 189 SSSQSSAFTNNKDLCGKVQGLRPCNALSTDKGGGHKDN 226
            +  +   +N K +    +     + L+  +      N
Sbjct: 187 KTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSN 224

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 58.0 bits (140), Expect = 4e-10
 Identities = 36/185 (19%), Positives = 63/185 (34%), Gaps = 11/185 (5%)

Query: 12  KIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLT--------ELSTLSLNGNNISGQIPE 63
            I A++ +  +L  L L++ + +      I  L          +S + L G         
Sbjct: 211 SILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDY 270

Query: 64  EIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQ 123
               L  L    +  +    P         ++ I N + +            +     L 
Sbjct: 271 SGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHL- 329

Query: 124 DLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLS--GEIPASLSSMLSLVAVNLSYNNLEGP 181
           D S N LT  +    G LT L++L L  N L    +I    + M SL  +++S N++   
Sbjct: 330 DFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD 389

Query: 182 LPDGS 186
              G 
Sbjct: 390 EKKGD 394

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 81.3 bits (200), Expect = 5e-18
 Identities = 36/161 (22%), Positives = 77/161 (47%), Gaps = 13/161 (8%)

Query: 19  SLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSM 78
           + ++ ++ +L    ++  +      L  +  +  N ++I   + + I  L N+  L L+ 
Sbjct: 19  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNG 74

Query: 79  NRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQL 138
           N+L+  I   +  L++L  L L +N +      +  +L  L+ L  L +N ++ +I   L
Sbjct: 75  NKLTD-IKP-LTNLKNLGWLFLDENKIKDLSSLK--DLKKLKSL-SLEHNGIS-DING-L 127

Query: 139 GKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 179
             L +L+SL L +N ++ +I   LS +  L  ++L  N + 
Sbjct: 128 VHLPQLESLYLGNNKIT-DIT-VLSRLTKLDTLSLEDNQIS 166

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 80.9 bits (199), Expect = 7e-18
 Identities = 45/178 (25%), Positives = 87/178 (48%), Gaps = 15/178 (8%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
             L   S+   +      L+ + ++  +++ +   +   I  L  ++ L LNGN ++  I
Sbjct: 26  DNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNGNKLT-DI 80

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
            + +  L NL  L L  N++   + + + +L+ L+ L+L  N  I  I   + +L  L+ 
Sbjct: 81  -KPLTNLKNLGWLFLDENKIKD-LSS-LKDLKKLKSLSLEHNG-ISDING-LVHLPQLES 135

Query: 122 LQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 179
           L  L  N +T +I   L +LT+L +L+L  N +S +I   L+ +  L  + LS N++ 
Sbjct: 136 L-YLGNNKIT-DITV-LSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHIS 188

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 77.5 bits (190), Expect = 1e-16
 Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 11/165 (6%)

Query: 17  IGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDL 76
           + +L  L  L L  N++  ++ + + +L +L +LSL  N IS  I   +  L  L+SL L
Sbjct: 83  LTNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYL 138

Query: 77  SMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPA 136
             N+++      +  L  L  L+L  N  I  I   +  L  LQ+L  LS N ++ ++ A
Sbjct: 139 GNNKITDITV--LSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNL-YLSKNHIS-DLRA 192

Query: 137 QLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGP 181
            L  L  L  L L       +     S+++    V  +  +L  P
Sbjct: 193 -LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 236

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 45.5 bits (107), Expect = 6e-06
 Identities = 17/133 (12%), Positives = 44/133 (33%), Gaps = 33/133 (24%)

Query: 47  LSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLI 106
           +         I    P++          +L    ++  +     EL  +  +  + +++ 
Sbjct: 1   MGETITVSTPIKQIFPDD--AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI- 55

Query: 107 GTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSML 166
                        + +Q + Y             L  +  L L+ N L+ +I   L+++ 
Sbjct: 56  -------------KSVQGIQY-------------LPNVTKLFLNGNKLT-DIK-PLTNLK 87

Query: 167 SLVAVNLSYNNLE 179
           +L  + L  N ++
Sbjct: 88  NLGWLFLDENKIK 100

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 41.2 bits (96), Expect = 1e-04
 Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 6/104 (5%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L L  N I   I   +  L++L  L+LS N +S ++ A +  L  L  L L       + 
Sbjct: 158 LSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKP 213

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNL 105
                 L+  +++  +   L    P  I +  D    N+  +  
Sbjct: 214 INHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHLP 255

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 81.2 bits (201), Expect = 6e-18
 Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 32/181 (17%)

Query: 12  KIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTE-------------LSTLSLNGNNIS 58
           ++P E  ++    E + + ++     P   G   E                L LN   +S
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84

Query: 59  GQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVG 118
             +PE      +L+SL  S N L+  +P     L+ L + N +   L    P        
Sbjct: 85  -SLPELPP---HLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPP-------L 132

Query: 119 LQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 178
           L+ L  +S N L  ++P +L   + L+ +++ +N+L  ++P    S+  +       N L
Sbjct: 133 LEYL-GVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFI---AAGNNQL 185

Query: 179 E 179
           E
Sbjct: 186 E 186

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 80.4 bits (199), Expect = 1e-17
 Identities = 34/192 (17%), Positives = 71/192 (36%), Gaps = 30/192 (15%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPA---------------HIGNLTE 46
           L  + NS+  ++P    SL  L+  + +   LS   P                 + N + 
Sbjct: 96  LVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSF 154

Query: 47  LSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLI 106
           L  + ++ N++  ++P+      +L+ +    N+L      ++  L  L  +    NN +
Sbjct: 155 LKIIDVDNNSLK-KLPDLPP---SLEFIAAGNNQLE--ELPELQNLPFLTAIYAD-NNSL 207

Query: 107 GTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSML 166
             +P    +L  +        N L      +L  L  L ++   +N L   +P    S+ 
Sbjct: 208 KKLPDLPLSLESI----VAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLE 260

Query: 167 SLVAVNLSYNNL 178
           +L   +    +L
Sbjct: 261 ALNVRDNYLTDL 272

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 78.9 bits (195), Expect = 3e-17
 Identities = 43/178 (24%), Positives = 73/178 (41%), Gaps = 27/178 (15%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           +    N +  +   E+ +L  L  ++  +N L   +P    +L  L+            +
Sbjct: 220 IVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLT----DL 272

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
           PE    L  LD  +   + LS   PN       L  LN S +N I ++     +L  L  
Sbjct: 273 PELPQSLTFLDVSENIFSGLSELPPN-------LYYLNAS-SNEIRSLCDLPPSLEEL-- 322

Query: 122 LQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 179
             ++S N L  E+PA   +   L+ L  S N+L+ E+P    ++  L   ++ YN L 
Sbjct: 323 --NVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPELPQNLKQL---HVEYNPLR 370

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 78.1 bits (193), Expect = 6e-17
 Identities = 37/167 (22%), Positives = 53/167 (31%), Gaps = 25/167 (14%)

Query: 13  IPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLD 72
           I     S + L E    S+ L+ E+P    N+   +      +      P   G    + 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 73  SLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTG 132
              L                R    L L+   L  ++P    +L  L      S NSLT 
Sbjct: 62  VSRLRDCL-----------DRQAHELELNNLGL-SSLPELPPHLESL----VASCNSLT- 104

Query: 133 EIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 179
           E+P     L  L   N +   LS   P        L  + +S N LE
Sbjct: 105 ELPELPQSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLE 144

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 68.1 bits (167), Expect = 2e-13
 Identities = 35/167 (20%), Positives = 66/167 (39%), Gaps = 22/167 (13%)

Query: 12  KIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNL 71
           +I +       L EL++S+N+L  E+PA    L  L     + N+++ ++PE      NL
Sbjct: 308 EIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLI---ASFNHLA-EVPELPQ---NL 359

Query: 72  DSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLT 131
             L +  N L    P+    + DLR+     N+ +  +P    NL  L     +  N L 
Sbjct: 360 KQLHVEYNPLRE-FPDIPESVEDLRM-----NSHLAEVPELPQNLKQL----HVETNPLR 409

Query: 132 GEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 178
            E P     +   + L ++   +      +  +   L      +++ 
Sbjct: 410 -EFPDIPESV---EDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.4 bits (108), Expect = 6e-06
 Identities = 18/120 (15%), Positives = 40/120 (33%), Gaps = 25/120 (20%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELS------------- 48
           L  + N +  ++P    +L    +LH+  N L  E P    ++ +L              
Sbjct: 342 LIASFNHLA-EVPELPQNLK---QLHVEYNPLR-EFPDIPESVEDLRMNSHLAEVPELPQ 396

Query: 49  ---TLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNL 105
               L +  N +  + P+      +++ L ++  R+  P          L       ++ 
Sbjct: 397 NLKQLHVETNPLR-EFPDIPE---SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHH 452

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 79.3 bits (196), Expect = 1e-17
 Identities = 49/182 (26%), Positives = 84/182 (46%), Gaps = 14/182 (7%)

Query: 2   LGLAGNSIGGKIPAEI-GSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ 60
           L L  N I  KI  +    L +L +L++S N L  EIP ++   + L  L ++ N I  +
Sbjct: 83  LVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIR-K 137

Query: 61  IPEEI-GGLLNLDSLDLSMNRL-SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVG 118
           +P+ +  GL N++ +++  N L +        +   L  L +S+  L   IP        
Sbjct: 138 VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPK--DLPET 194

Query: 119 LQDLQDLSYNSLTGEIPAQ-LGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNN 177
           L +L  L +N +   I  + L + ++L  L L HN +      SLS + +L  ++L  N 
Sbjct: 195 LNEL-HLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK 252

Query: 178 LE 179
           L 
Sbjct: 253 LS 254

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 78.5 bits (194), Expect = 3e-17
 Identities = 42/211 (19%), Positives = 79/211 (37%), Gaps = 26/211 (12%)

Query: 2   LGLAGNSIGGKIPAEI-GSLSQLVELHLSSNQL-SGEIPAHIGNLTELSTLSLNGNNISG 59
           L +  N I  K+P  +   L  +  + +  N L +        +  +L+ L ++   ++ 
Sbjct: 128 LRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT- 185

Query: 60  QIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQI-GNLVG 118
            IP+++     L+ L L  N++       +     L  L L  +N I  I       L  
Sbjct: 186 GIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLG-HNQIRMIENGSLSFLPT 242

Query: 119 LQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPAS-------LSSMLSLVAV 171
           L++L  L  N L+  +PA L  L  LQ + L  NN++ ++  +                +
Sbjct: 243 LREL-HLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGI 299

Query: 172 NLSYNNLEGPLPDGSVFSSSQSSAFTNNKDL 202
           +L  N +         +   Q + F    D 
Sbjct: 300 SLFNNPVP--------YWEVQPATFRCVTDR 322

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 77.7 bits (192), Expect = 4e-17
 Identities = 44/180 (24%), Positives = 72/180 (40%), Gaps = 12/180 (6%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHI-GNLTELSTLSLNGNNISGQ 60
           L L  N I      +   L  L  L L +N++S +I       L +L  L ++ N++  +
Sbjct: 59  LDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLV-E 116

Query: 61  IPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQ 120
           IP  +    +L  L +  NR+          LR++  + +   N +    F+ G   GL+
Sbjct: 117 IPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMG-GNPLENSGFEPGAFDGLK 173

Query: 121 DLQ-DLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPA-SLSSMLSLVAVNLSYNNL 178
                +S   LT  IP  L     L  L+L HN +   I    L     L  + L +N +
Sbjct: 174 LNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQI 229

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 66.2 bits (162), Expect = 5e-13
 Identities = 32/159 (20%), Positives = 57/159 (35%), Gaps = 13/159 (8%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPA-HIGNLTELSTLSLNGNNISGQ 60
           L ++   +   IP        L ELHL  N++   I    +   ++L  L L  N I   
Sbjct: 177 LRISEAKLT-GIPK--DLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMI 232

Query: 61  IPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQ 120
               +  L  L  L L  N+LS  +P  + +L+ L+++ L  NN+          +    
Sbjct: 233 ENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGV 291

Query: 121 DLQDLSYNSLTG------EIPAQL-GKLTRLQSLNLSHN 152
                +  SL        E+       +T   ++   + 
Sbjct: 292 KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 66.2 bits (162), Expect = 6e-13
 Identities = 35/158 (22%), Positives = 59/158 (37%), Gaps = 8/158 (5%)

Query: 22  QLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL 81
            L  +  S   L   +P  I    + + L L  N+IS    ++  GL +L +L L  N++
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 82  SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKL 141
           S         LR L+ L +S  N +  IP  +     L +L  +  N +          L
Sbjct: 91  SKIHEKAFSPLRKLQKLYIS-KNHLVEIPPNL--PSSLVEL-RIHDNRIRKVPKGVFSGL 146

Query: 142 TRLQSLNLSHNNL-SGEIPASLSSMLSLVAVNLSYNNL 178
             +  + +  N L +          L L  + +S   L
Sbjct: 147 RNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL 184

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 6/97 (6%)

Query: 94  DLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNN 153
            LR++  S   L   +P +I        L DL  N ++         L  L +L L +N 
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS--PDTTLL-DLQNNDISELRKDDFKGLQHLYALVLVNNK 89

Query: 154 LSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSS 190
           +S     + S +  L  + +S N+L   +P   + SS
Sbjct: 90  ISKIHEKAFSPLRKLQKLYISKNHLVE-IPPN-LPSS 124

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 78.7 bits (194), Expect = 3e-17
 Identities = 52/176 (29%), Positives = 79/176 (44%), Gaps = 21/176 (11%)

Query: 13  IPAEIGSLSQLVELHLSSNQLSGEIPAHI--GNLTELSTLSLNGNNISGQIPEEI-GGLL 69
           +P  + S +    L LS N LS  + A      LT L +L L+ N+++  I  E    + 
Sbjct: 33  VPQSLPSYTA--LLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVP 88

Query: 70  NLDSLDLSMNRLSGPIPNQI-GELRDLRILNLSQNNLIGTIP---FQIGNLVGLQDLQDL 125
           NL  LDLS N L   +   +  +L+ L +L L  NN I  +    F+  ++  LQ L  L
Sbjct: 89  NLRYLDLSSNHLHT-LDEFLFSDLQALEVLLLY-NNHIVVVDRNAFE--DMAQLQKL-YL 143

Query: 126 SYNSLTGEIPAQ----LGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNN 177
           S N ++   P +      KL +L  L+LS N L       L  + + V   L  +N
Sbjct: 144 SQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 77.6 bits (191), Expect = 6e-17
 Identities = 42/190 (22%), Positives = 65/190 (34%), Gaps = 10/190 (5%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHI-GNLTELSTLSLNGNNISGQ 60
           L      +             L ++ +S N +   I A +  NL +L  + +   N    
Sbjct: 35  LRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY 94

Query: 61  IPEEI-GGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIP---FQIGNL 116
           I  E    L NL  L +S   +               +L++  N  I TI    F    L
Sbjct: 95  INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV--GL 152

Query: 117 VGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPA-SLSSMLSLVAVNLSY 175
                +  L+ N +  EI       T+L  LNLS NN   E+P          V +++S 
Sbjct: 153 SFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR 211

Query: 176 NNLEGPLPDG 185
             +   LP  
Sbjct: 212 TRIH-SLPSY 220

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 67.5 bits (165), Expect = 2e-13
 Identities = 38/171 (22%), Positives = 64/171 (37%), Gaps = 12/171 (7%)

Query: 13  IPAEIGSLSQLVELHLSSNQLSGEIPAHI-GNLTELSTLSLNGNNISGQIPEEI-GGLLN 70
           IP+++      +EL     +L   I         +L  + ++ N++   I  ++   L  
Sbjct: 24  IPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80

Query: 71  LDSLDLS-MNRLSGPIPNQIGELRDLRILNLSQNNLIGTIP-FQIGNLVGLQDLQDLSYN 128
           L  + +   N L    P     L +L+ L +S N  I  +P     + +    L D+  N
Sbjct: 81  LHEIRIEKANNLLYINPEAFQNLPNLQYLLIS-NTGIKHLPDVHKIHSLQKVLL-DIQDN 138

Query: 129 SLTGEIPAQL--GKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNN 177
                I      G       L L+ N +  EI  S  +   L  +NLS NN
Sbjct: 139 INIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNN 188

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 62.5 bits (152), Expect = 1e-11
 Identities = 27/140 (19%), Positives = 53/140 (37%), Gaps = 6/140 (4%)

Query: 49  TLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGT 108
                 + ++ +IP ++    N   L   + +L            DL  + +SQN+++  
Sbjct: 13  VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 69

Query: 109 IPFQI-GNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPA-SLSSML 166
           I   +  NL  L +++    N+L    P     L  LQ L +S+  +   +P       L
Sbjct: 70  IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSL 128

Query: 167 SLVAVNLSYNNLEGPLPDGS 186
             V +++  N     +   S
Sbjct: 129 QKVLLDIQDNINIHTIERNS 148

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 62.2 bits (151), Expect = 1e-11
 Identities = 28/160 (17%), Positives = 58/160 (36%), Gaps = 10/160 (6%)

Query: 25  ELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGP 84
                 ++++ EIP+ +        L      +         G  +L+ +++S N +   
Sbjct: 13  VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 69

Query: 85  IPNQI-GELRDLRILNLSQNNLIGTIPFQI-GNLVGLQDLQDLSYNSLTGEIPAQL-GKL 141
           I   +   L  L  + + + N +  I  +   NL  LQ L  +S   +   +P       
Sbjct: 70  IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL-LISNTGIK-HLPDVHKIHS 127

Query: 142 TRLQSLNLSHNNLSGEIPASLSSMLS--LVAVNLSYNNLE 179
            +   L++  N     I  +    LS   V + L+ N ++
Sbjct: 128 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 59.5 bits (144), Expect = 1e-10
 Identities = 39/155 (25%), Positives = 60/155 (38%), Gaps = 11/155 (7%)

Query: 2   LGLAGNSIGGKIPAEI-GSLSQLVELHLSSNQLSGEIPAHI--GNLTELSTLSLNGNNIS 58
           L ++   I   +P        Q V L +  N     I  +   G   E   L LN N I 
Sbjct: 109 LLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167

Query: 59  GQIPEEIGGLLNLDSLDLS-MNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLV 117
            +I         LD L+LS  N L     +         IL++S+   I ++P     L 
Sbjct: 168 -EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPS--YGLE 223

Query: 118 GLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHN 152
            L+ L+  S  +L  ++P  L KL  L   +L++ 
Sbjct: 224 NLKKLRARSTYNLK-KLPT-LEKLVALMEASLTYP 256

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 74.7 bits (184), Expect = 2e-16
 Identities = 31/186 (16%), Positives = 66/186 (35%), Gaps = 11/186 (5%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHI-GNLTELSTLSLNGNNISGQ 60
           L L    +         +L  +  +++S +    ++ +H   NL++++ + +        
Sbjct: 36  LKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY 95

Query: 61  IPEEI-GGLLNLDSLDLSMNRLSG-PIPNQIGELRDLRILNLSQNNLIGTIPFQI-GNLV 117
           I  +    L  L  L +    L   P   ++       IL ++ N  + +IP      L 
Sbjct: 96  IDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC 155

Query: 118 GLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPAS----LSSMLSLVAVNL 173
                  L  N  T  +       T+L ++ L+ N     I       + S  SL  +++
Sbjct: 156 NETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL--LDV 212

Query: 174 SYNNLE 179
           S  ++ 
Sbjct: 213 SQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 58.5 bits (142), Expect = 1e-10
 Identities = 20/146 (13%), Positives = 48/146 (32%), Gaps = 10/146 (6%)

Query: 45  TELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNN 104
            +     +   +I  +IP       +  +L L    L     +    L ++  + +S + 
Sbjct: 11  HQEEDFRVTCKDIQ-RIP---SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV 66

Query: 105 LIGTIPFQI-GNLVGLQDLQDLSYNSLTGEIPAQ-LGKLTRLQSLNLSHNNLSGEIPA-- 160
            +  +      NL  +  + ++        I    L +L  L+ L + +  L    P   
Sbjct: 67  TLQQLESHSFYNLSKVTHI-EIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLT 124

Query: 161 SLSSMLSLVAVNLSYNNLEGPLPDGS 186
            + S      + ++ N     +P  +
Sbjct: 125 KVYSTDIFFILEITDNPYMTSIPVNA 150

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 56.2 bits (136), Expect = 7e-10
 Identities = 23/165 (13%), Positives = 48/165 (29%), Gaps = 12/165 (7%)

Query: 21  SQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR 80
            Q  +  ++   +   IP          TL L   ++          L N+  + +S++ 
Sbjct: 11  HQEEDFRVTCKDIQ-RIP---SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV 66

Query: 81  LSGPIPNQI-GELRDLRILNLSQNNLIGTIPFQI-GNLVGLQDLQDLSYNSLTGEIPAQ- 137
               + +     L  +  + +     +  I       L  L+ L  +    L    P   
Sbjct: 67  TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL-GIFNTGLK-MFPDLT 124

Query: 138 -LGKLTRLQSLNLSHNNLSGEIPASLSSMLS--LVAVNLSYNNLE 179
            +        L ++ N     IP +    L    + + L  N   
Sbjct: 125 KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.0 bits (107), Expect = 6e-06
 Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 5/104 (4%)

Query: 1   MLGLAGNSIGGKIPAEI--GSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNIS 58
           +L +  N     IP     G  ++ + L L +N  +  +  +  N T+L  + LN N   
Sbjct: 134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYL 192

Query: 59  GQIPEEI-GGLLN-LDSLDLSMNRLSGPIPNQIGELRDLRILNL 100
             I ++  GG+ +    LD+S   ++      +  L++L   N 
Sbjct: 193 TVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 75.9 bits (186), Expect = 4e-16
 Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 7/135 (5%)

Query: 22  QLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL 81
           +   L    ++   E         ++  L L   +++  +   +  LL +  LDLS NRL
Sbjct: 418 RAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRL 475

Query: 82  SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTG-EIPAQLGK 140
              +P  +  LR L +L  S +N +  +   + NL  LQ+L  L  N L        L  
Sbjct: 476 RA-LPPALAALRCLEVLQAS-DNALENVD-GVANLPRLQEL-LLCNNRLQQSAAIQPLVS 531

Query: 141 LTRLQSLNLSHNNLS 155
             RL  LNL  N+L 
Sbjct: 532 CPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 72.9 bits (178), Expect = 5e-15
 Identities = 36/187 (19%), Positives = 68/187 (36%), Gaps = 28/187 (14%)

Query: 14  PAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI------------ 61
             +  +  QL    LS  + +  + + + +  EL  L          I            
Sbjct: 342 CRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY 400

Query: 62  -PEEIGGLLNLDSLD--------LSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQ 112
             E +     L ++D           ++          E  D+R+L+L+  +L   +   
Sbjct: 401 EKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH- 458

Query: 113 IGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVN 172
           +  L+ +  L DLS+N L   +P  L  L  L+ L  S N L   +   ++++  L  + 
Sbjct: 459 LEQLLLVTHL-DLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELL 514

Query: 173 LSYNNLE 179
           L  N L+
Sbjct: 515 LCNNRLQ 521

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 59.8 bits (144), Expect = 1e-10
 Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 5/96 (5%)

Query: 1   MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISG- 59
            L L+ N +   +P  + +L  L  L  S N L   +   + NL  L  L L  N +   
Sbjct: 467 HLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQS 523

Query: 60  QIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDL 95
              + +     L  L+L  N L          L ++
Sbjct: 524 AAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEM 558

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 73.6 bits (181), Expect = 1e-15
 Identities = 45/164 (27%), Positives = 83/164 (50%), Gaps = 13/164 (7%)

Query: 16  EIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLD 75
            +  L+ L+ L L  NQ++   P  + NLT+++ L L+GN +       I GL ++ +LD
Sbjct: 58  GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK--NVSAIAGLQSIKTLD 113

Query: 76  LSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIP 135
           L+  +++   P  +  L +L++L L  N +    P  +  L  LQ L  +    ++   P
Sbjct: 114 LTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYL-SIGNAQVSDLTP 168

Query: 136 AQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 179
             L  L++L +L    N +S +I   L+S+ +L+ V+L  N + 
Sbjct: 169 --LANLSKLTTLKADDNKIS-DISP-LASLPNLIEVHLKNNQIS 208

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 71.3 bits (175), Expect = 8e-15
 Identities = 37/161 (22%), Positives = 72/161 (44%), Gaps = 13/161 (8%)

Query: 19  SLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSM 78
           +L+  +++    + ++  +     +L  ++TLS  G  ++    E +  L NL  L+L  
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 79  NRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQL 138
           N+++   P  +  L  +  L LS N L       I  L  ++ L DL+   +T   P  L
Sbjct: 73  NQITDLAP--LKNLTKITELELSGNPL--KNVSAIAGLQSIKTL-DLTSTQITDVTP--L 125

Query: 139 GKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 179
             L+ LQ L L  N ++  I   L+ + +L  +++    + 
Sbjct: 126 AGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVS 164

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 69.3 bits (170), Expect = 4e-14
 Identities = 39/178 (21%), Positives = 68/178 (38%), Gaps = 15/178 (8%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           +    +++   +      L  +  L      ++  I   +  L  L  L L  N I+   
Sbjct: 24  IAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKDNQITD-- 77

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
              +  L  +  L+LS N L       I  L+ ++ L+L+   +    P     L  LQ 
Sbjct: 78  LAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTPLA--GLSNLQV 133

Query: 122 LQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 179
           L  L  N +T  I   L  LT LQ L++ +  +S   P  L+++  L  +    N + 
Sbjct: 134 L-YLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS 186

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 68.6 bits (168), Expect = 6e-14
 Identities = 42/181 (23%), Positives = 76/181 (41%), Gaps = 13/181 (7%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L L+GN +  K  + I  L  +  L L+S Q++   P  +  L+ L  L L+ N I+   
Sbjct: 90  LELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNIS 145

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
           P  + GL NL  L +   ++S   P  +  L  L  L    +N I  I   + +L  L +
Sbjct: 146 P--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKAD-DNKISDISP-LASLPNLIE 199

Query: 122 LQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGP 181
           +  L  N ++   P  L   + L  + L++  ++ +     ++++    V         P
Sbjct: 200 V-HLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAP 256

Query: 182 L 182
            
Sbjct: 257 A 257

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 53.9 bits (130), Expect = 8e-09
 Identities = 40/155 (25%), Positives = 65/155 (41%), Gaps = 11/155 (7%)

Query: 1   MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ 60
           +L L  N I   I   +  L+ L  L + + Q+S   P  + NL++L+TL  + N IS  
Sbjct: 133 VLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD- 187

Query: 61  IPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQ 120
               +  L NL  + L  N++S   P  +    +L I+ L+   +     F   NLV   
Sbjct: 188 -ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPN 244

Query: 121 DLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLS 155
            ++  S   +     +  G      S NL+ N  S
Sbjct: 245 VVKGPSGAPIAPATISDNGTYA---SPNLTWNLTS 276

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 73.8 bits (181), Expect = 2e-15
 Identities = 40/180 (22%), Positives = 63/180 (35%), Gaps = 9/180 (5%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
             L+ +           S S    L+ + N  +  +      L  L TL L  N +    
Sbjct: 334 KMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NF 392

Query: 62  PEEIGGLLNLDSLDLSMNRL----SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLV 117
            +      N+ SL+     L    S            + +LNLS N L G++   +    
Sbjct: 393 FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PP 450

Query: 118 GLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNN 177
            ++ L DL  N +   IP  +  L  LQ LN++ N L          + SL  + L  N 
Sbjct: 451 KVKVL-DLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 67.2 bits (164), Expect = 4e-13
 Identities = 32/187 (17%), Positives = 62/187 (33%), Gaps = 7/187 (3%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L +       +      +L  L+  H+ +        A      E++   L+ ++     
Sbjct: 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIH 345

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
                   +   L+ + N  +  +      L+ L+ L L +N L             +  
Sbjct: 346 MVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL-KNFFKVALMTKNMSS 404

Query: 122 LQ--DLSYNSLT-GEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 178
           L+  D+S NSL              +  LNLS N L+G +   L     +  ++L  N +
Sbjct: 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRI 462

Query: 179 EGPLPDG 185
              +P  
Sbjct: 463 MS-IPKD 468

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 56.4 bits (136), Expect = 2e-09
 Identities = 48/202 (23%), Positives = 76/202 (37%), Gaps = 12/202 (5%)

Query: 13  IPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEI-GGLLNL 71
           +P ++    +   L LS N +S      I  L+EL  L L+ N I   +   +     +L
Sbjct: 46  VPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDL 102

Query: 72  DSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPF--QIGNLVGLQDLQDLSYNS 129
           + LD+S NRL   I      +  LR L+LS N+    +P   + GNL  L  L  LS   
Sbjct: 103 EYLDVSHNRLQN-IS--CCPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFL-GLSAAK 157

Query: 130 LTGEIPAQLGKL-TRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVF 188
                   +  L      L+L   ++ G    SL    + V   + + N    +      
Sbjct: 158 FRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSV 217

Query: 189 SSSQSSAFTNNKDLCGKVQGLR 210
           ++      +N K      Q L 
Sbjct: 218 NALGHLQLSNIKLNDENCQRLM 239

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 25/177 (14%), Positives = 64/177 (36%), Gaps = 16/177 (9%)

Query: 18  GSLSQLVELHLSSNQLSGEIPAHIGNLTE-------LSTLSLNGNNISGQIPEEIGGLLN 70
            S++ L  L LS+ +L+ E    +            L  ++L     + +   ++     
Sbjct: 215 MSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW 274

Query: 71  ---LDSLDLSMNRLSGPIPNQIG-----ELRDLRILNLSQNNLIGTIPFQIGNLVGLQDL 122
              ++ L++    ++  I  +        L+ L I ++ +N +       + ++    ++
Sbjct: 275 PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHV-KNQVFLFSKEALYSVFAEMNI 333

Query: 123 QDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 179
           + LS +             +    LN + N  +  +    S++  L  + L  N L+
Sbjct: 334 KMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.2 bits (99), Expect = 8e-05
 Identities = 29/194 (14%), Positives = 62/194 (31%), Gaps = 14/194 (7%)

Query: 13  IPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLD 72
           +  E G+L++L  L LS+ +        + +L     L    +        E   + N  
Sbjct: 138 VCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTT 197

Query: 73  SLDLSMNRLSGPIPNQIGELRDLRILNLSQNNL----IGTIPFQIGNLVGLQDLQDLSYN 128
            L L  +  S         +  L  L LS   L       +   +  L     L +++  
Sbjct: 198 VLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ 257

Query: 129 SLTGEIPA-----QLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLP 183
            +           Q      ++ LN+ +  ++  I     +       +L   +++    
Sbjct: 258 HIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQ-- 315

Query: 184 DGSVFSSSQSSAFT 197
              VF  S+ + ++
Sbjct: 316 ---VFLFSKEALYS 326

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 72.3 bits (178), Expect = 2e-15
 Identities = 54/183 (29%), Positives = 85/183 (46%), Gaps = 17/183 (9%)

Query: 2   LGLAGNSIGGKIPAEI-GSLSQLVELHLSSNQLSGEIPAHI-GNLTELSTLSLNGNNISG 59
           L L  N +   +P++    L++L  L+L+ N+L   +PA I   L  L TL +  N +  
Sbjct: 42  LDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ- 98

Query: 60  QIPEEI-GGLLNLDSLDLSMNRLSGPIPNQI-GELRDLRILNLSQNNLIGTIP---FQIG 114
            +P  +   L+NL  L L  N+L   +P ++   L  L  L+L  N L  ++P   F   
Sbjct: 99  ALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFD-- 154

Query: 115 NLVGLQDLQDLSYNSLTGEIPAQL-GKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNL 173
            L  L++L  L  N L   +P     KLT L++L L +N L      +  S+  L  + L
Sbjct: 155 KLTSLKEL-RLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212

Query: 174 SYN 176
             N
Sbjct: 213 QEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.4 bits (116), Expect = 5e-07
 Identities = 40/124 (32%), Positives = 57/124 (45%), Gaps = 9/124 (7%)

Query: 70  NLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQI-GNLVGLQDLQDLSYN 128
           +   LDL  N+LS         L  LR+L L+ N L  T+P  I   L  L+ L  ++ N
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETL-WVTDN 95

Query: 129 SLTGEIPAQL-GKLTRLQSLNLSHNNLSGEIPASL-SSMLSLVAVNLSYNNLEGPLPDGS 186
            L   +P  +  +L  L  L L  N L   +P  +  S+  L  ++L YN L+  LP G 
Sbjct: 96  KLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQS-LPKG- 151

Query: 187 VFSS 190
           VF  
Sbjct: 152 VFDK 155

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 71.7 bits (176), Expect = 8e-15
 Identities = 33/186 (17%), Positives = 67/186 (36%), Gaps = 10/186 (5%)

Query: 2   LGLAGNSIGGKIPAEI-GSLSQLVELHLSSNQLSGEIPAHI-GNLTELSTLSLNGNNISG 59
           L L GN         +   L++L  L + +     +I       LT L  L ++ +++  
Sbjct: 129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188

Query: 60  QIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQI-----G 114
             P+ +  + N+  L L M +    +   +     +  L L   +L      ++      
Sbjct: 189 YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETN 248

Query: 115 NLVGLQDLQ--DLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVN 172
           +L+     +   ++  SL  ++   L +++ L  L  S N L          + SL  + 
Sbjct: 249 SLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIW 307

Query: 173 LSYNNL 178
           L  N  
Sbjct: 308 LHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 70.9 bits (174), Expect = 1e-14
 Identities = 38/195 (19%), Positives = 79/195 (40%), Gaps = 15/195 (7%)

Query: 2   LGLAGNSIGGKIPAEI-GSLSQLVELHLSSNQLSGEIPAHI-GNLTELSTLSLNGNNISG 59
           L L+ N +   + +     LS L  L+L  N         +  +LT+L  L +   +   
Sbjct: 105 LDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT 163

Query: 60  QIPEEI-GGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVG 118
           +I  +   GL  L+ L++  + L    P  +  ++++  L L     I  +   +     
Sbjct: 164 KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSS 223

Query: 119 LQDLQDLSYNSLTG----EIPA----QLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVA 170
           ++ L +L    L      E+       L K    +++ ++  +L  ++   L+ +  L+ 
Sbjct: 224 VECL-ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLE 281

Query: 171 VNLSYNNLEGPLPDG 185
           +  S N L+  +PDG
Sbjct: 282 LEFSRNQLKS-VPDG 295

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 70.5 bits (173), Expect = 2e-14
 Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 9/170 (5%)

Query: 13  IPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEI-GGLLNL 71
           IP+ +     +  L LS+N+++    + +     L  L L  N I+  I E+    L +L
Sbjct: 46  IPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSL 102

Query: 72  DSLDLSMNRLSGPIPNQI-GELRDLRILNLSQNNLIGTIPFQI-GNLVGLQDLQDLSYNS 129
           + LDLS N LS  + +     L  L  LNL  N         +  +L  LQ L+  + ++
Sbjct: 103 EHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDT 161

Query: 130 LTGEIPAQ-LGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 178
            T +I  +    LT L+ L +  ++L    P SL S+ ++  + L     
Sbjct: 162 FT-KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 70.5 bits (173), Expect = 2e-14
 Identities = 41/230 (17%), Positives = 74/230 (32%), Gaps = 17/230 (7%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHI-GNLTELSTLSLNGNNISGQ 60
           + L+ NSI          L  L  L +        I  +    L+ L  L L+ N    Q
Sbjct: 35  VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-Q 93

Query: 61  IPEEI-GGLLNLDSLDLSMNRL-SGPIPNQI-GELRDLRILNLSQNNLIGTIPFQI-GNL 116
           +      GL NL+ L L+   L    +       L  L +L L  NN+    P     N+
Sbjct: 94  LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM 153

Query: 117 VGLQDLQDLSYNSLT----------GEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSML 166
                L DL++N +                 L +L+ +   +++   L  E   +     
Sbjct: 154 RRFHVL-DLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNT 212

Query: 167 SLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCGKVQGLRPCNALS 216
           S+  ++LS N  +  +      + + +   +        +          
Sbjct: 213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 67.5 bits (165), Expect = 3e-13
 Identities = 36/189 (19%), Positives = 64/189 (33%), Gaps = 9/189 (4%)

Query: 21  SQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEI-GGLLNLDSLDLSMN 79
           + +  + LS N ++         L +L  L +        I      GL +L  L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 80  RLSGPIPNQIGELRDLRILNLSQNNLIGTI----PFQIGNLVGLQDLQDLSYNSLTGEIP 135
           +           L +L +L L+Q NL G +     F+   L  L+ L  L  N++    P
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFK--PLTSLEML-VLRDNNIKKIQP 146

Query: 136 AQL-GKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSS 194
           A     + R   L+L+ N +       L +        L  +++     +       +  
Sbjct: 147 ASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG 206

Query: 195 AFTNNKDLC 203
               N  + 
Sbjct: 207 NPFKNTSIT 215

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 64.4 bits (157), Expect = 3e-12
 Identities = 36/160 (22%), Positives = 58/160 (36%), Gaps = 29/160 (18%)

Query: 21  SQLVELHLSSNQLSGEIPAHI-GNLTELSTLSLNGNNISGQIPEEI-GGLLNLDSLDLSM 78
           S +    LS +++   +   +  + T+L  L+L  N I+ +I +    GL +L  L+LS 
Sbjct: 275 SGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQ 332

Query: 79  NRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQL 138
           N L          L  L +L+LS N++                 + L   S         
Sbjct: 333 NFLGSIDSRMFENLDKLEVLDLSYNHI-----------------RALGDQSFL------- 368

Query: 139 GKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 178
             L  L+ L L  N L          + SL  + L  N  
Sbjct: 369 -GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 59.8 bits (145), Expect = 1e-10
 Identities = 38/185 (20%), Positives = 69/185 (37%), Gaps = 21/185 (11%)

Query: 19  SLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSL---- 74
            LS +    ++   L  E   +    T ++TL L+GN     + +     +    +    
Sbjct: 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245

Query: 75  -DLSMNRLSGPIPNQIGELRD----------LRILNLSQNNLIGTIPFQI-GNLVGLQDL 122
              S N  S        +  +          ++  +LS++  I  +   +  +   L+ L
Sbjct: 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK-IFALLKSVFSHFTDLEQL 304

Query: 123 QDLSYNSLTGEIPAQ-LGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGP 181
             L+ N +  +I       LT L  LNLS N L         ++  L  ++LSYN++   
Sbjct: 305 -TLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA- 361

Query: 182 LPDGS 186
           L D S
Sbjct: 362 LGDQS 366

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 66.6 bits (163), Expect = 2e-13
 Identities = 35/161 (21%), Positives = 75/161 (46%), Gaps = 13/161 (8%)

Query: 19  SLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSM 78
           + ++ ++ +L    ++  +      L  +  +  N ++I   + + I  L N+  L L+ 
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNG 77

Query: 79  NRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQL 138
           N+L+  I   +  L++L  L L +N +      +  +L  L+ L  L +N ++ +I   L
Sbjct: 78  NKLTD-IKP-LANLKNLGWLFLDENKVKDLSSLK--DLKKLKSL-SLEHNGIS-DING-L 130

Query: 139 GKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 179
             L +L+SL L +N ++      LS +  L  ++L  N + 
Sbjct: 131 VHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS 169

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 65.5 bits (160), Expect = 7e-13
 Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 11/165 (6%)

Query: 17  IGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDL 76
           + +L  L  L L  N++  ++ + + +L +L +LSL  N IS      +  L  L+SL L
Sbjct: 86  LANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGIS--DINGLVHLPQLESLYL 141

Query: 77  SMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPA 136
             N+++      +  L  L  L+L  N  I  I   +  L  LQ+L  LS N ++ ++ A
Sbjct: 142 GNNKITDITV--LSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNL-YLSKNHIS-DLRA 195

Query: 137 QLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGP 181
            L  L  L  L L       +     S+++    V  +  +L  P
Sbjct: 196 -LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 239

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 63.9 bits (156), Expect = 2e-12
 Identities = 45/178 (25%), Positives = 85/178 (47%), Gaps = 15/178 (8%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
             L   S+   +      L+ + ++  +++ +   +   I  L  ++ L LNGN ++  I
Sbjct: 29  DNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNGNKLT-DI 83

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
            + +  L NL  L L  N++       + +L+ L+ L+L  N  I  I   + +L  L+ 
Sbjct: 84  -KPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNG-ISDING-LVHLPQLES 138

Query: 122 LQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 179
           L  L  N +T +I   L +LT+L +L+L  N +S +I   L+ +  L  + LS N++ 
Sbjct: 139 L-YLGNNKIT-DITV-LSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHIS 191

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.0 bits (125), Expect = 3e-08
 Identities = 44/158 (27%), Positives = 69/158 (43%), Gaps = 11/158 (6%)

Query: 1   MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ 60
            L L  N I   I   +  L QL  L+L +N+++ +I   +  LT+L TLSL  N IS  
Sbjct: 116 SLSLEHNGIS-DING-LVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQISD- 170

Query: 61  IPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQ 120
               + GL  L +L LS N +S      +  L++L +L L     +        NLV   
Sbjct: 171 -IVPLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPN 227

Query: 121 DLQDLSYNSLTGEIPAQLGKLTRLQ---SLNLSHNNLS 155
            +++   + +T EI +  G   +      L    N +S
Sbjct: 228 TVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVS 265

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 65.5 bits (160), Expect = 1e-12
 Identities = 32/164 (19%), Positives = 65/164 (39%), Gaps = 18/164 (10%)

Query: 16  EIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLD 75
           ++    QL  L  SSN+L+ EI   +  LT+L+    + N ++ ++   +  L  L +L 
Sbjct: 207 DLNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLH 260

Query: 76  LSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIP 135
                L       +     L          I  +   + +   L  L D     +T E+ 
Sbjct: 261 CIQTDLLE---IDLTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLL-DCQAAGIT-ELD 313

Query: 136 AQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 179
             L +  +L  L L++  L+ E+   +S    L +++    +++
Sbjct: 314 --LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 63.6 bits (155), Expect = 5e-12
 Identities = 34/164 (20%), Positives = 69/164 (42%), Gaps = 18/164 (10%)

Query: 16  EIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLD 75
            I  L+ L +L  +SN ++  +   +   T L+ L+ + N ++  +   +  L  L  L+
Sbjct: 59  GIEKLTGLTKLICTSNNIT-TLD--LSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLN 112

Query: 76  LSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIP 135
              N+L+      + +   L  LN ++N L       + +   L +L D   N    ++ 
Sbjct: 113 CDTNKLT---KLDVSQNPLLTYLNCARNTLT---EIDVSHNTQLTEL-DCHLNKKITKLD 165

Query: 136 AQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 179
             +   T+L +L+ S N ++      +S    L  +N   NN+ 
Sbjct: 166 --VTPQTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNIT 204

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 63.2 bits (154), Expect = 7e-12
 Identities = 37/176 (21%), Positives = 67/176 (38%), Gaps = 17/176 (9%)

Query: 4   LAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPE 63
            A   +          L+ L  L   ++ ++ ++   I  LT L+ L    NNI+     
Sbjct: 25  AAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG-IEKLTGLTKLICTSNNITTL--- 79

Query: 64  EIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQ 123
           ++    NL  L    N+L+      +  L  L  LN   N L       +     L  L 
Sbjct: 80  DLSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKL---TKLDVSQNPLLTYL- 132

Query: 124 DLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 179
           + + N+LT EI   +   T+L  L+   N    ++   ++    L  ++ S+N + 
Sbjct: 133 NCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT 183

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 63.2 bits (154), Expect = 7e-12
 Identities = 39/163 (23%), Positives = 70/163 (42%), Gaps = 18/163 (11%)

Query: 17  IGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDL 76
           +     L  L+ + N L+ EI   + + T+L+ L  + N    ++   +     L +LD 
Sbjct: 123 VSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDC 177

Query: 77  SMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPA 136
           S N+++      + + + L  LN    N I  +       + L  L D S N LT EI  
Sbjct: 178 SFNKITE---LDVSQNKLLNRLNCD-TNNITKLDL--NQNIQLTFL-DCSSNKLT-EID- 228

Query: 137 QLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 179
            +  LT+L   + S N L+    ++LS + +L   +    +L 
Sbjct: 229 -VTPLTQLTYFDCSVNPLTELDVSTLSKLTTL---HCIQTDLL 267

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 61.6 bits (150), Expect = 3e-11
 Identities = 28/163 (17%), Positives = 58/163 (35%), Gaps = 18/163 (11%)

Query: 16  EIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLD 75
           ++     L  L+  +N ++ ++   +    +L+ L  + N ++ +I   +  L  L   D
Sbjct: 186 DVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFD 239

Query: 76  LSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIP 135
            S+N L+    + + +L  L          +  I      L     L             
Sbjct: 240 CSVNPLTELDVSTLSKLTTLHC----IQTDLLEID-----LTHNTQLIYFQAEGCRKIKE 290

Query: 136 AQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 178
             +   T+L  L+     ++ E+   LS    LV + L+   L
Sbjct: 291 LDVTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTEL 330

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 27/164 (16%), Positives = 61/164 (37%), Gaps = 14/164 (8%)

Query: 17  IGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDL 76
           + +LS+L  LH     L  EI   + + T+L      G     ++  ++     L  LD 
Sbjct: 250 VSTLSKLTTLHCIQTDLL-EID--LTHNTQLIYFQAEGCRKIKEL--DVTHNTQLYLLDC 304

Query: 77  SMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPA 136
               ++  +   + +   L  L L+ N  +  +   + +   L+ L       +  +  +
Sbjct: 305 QAAGIT-ELD--LSQNPKLVYLYLN-NTELTELD--VSHNTKLKSL-SCVNAHIQ-DFSS 356

Query: 137 QLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEG 180
            +GK+  L +   +          +L++    +AV+    +  G
Sbjct: 357 -VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFG 399

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 55.1 bits (133), Expect = 4e-09
 Identities = 31/164 (18%), Positives = 55/164 (33%), Gaps = 18/164 (10%)

Query: 20  LSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMN 79
            +  V                   L  L++L  + ++I+      I  L  L  L  + N
Sbjct: 20  FASEVAAAFEMQATD---TISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSN 74

Query: 80  RLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLG 139
            ++      + +  +L  L    N L       +  L  L  L +   N LT ++   + 
Sbjct: 75  NITTL---DLSQNTNLTYLACDSNKLTN---LDVTPLTKLTYL-NCDTNKLT-KLD--VS 124

Query: 140 KLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLP 183
           +   L  LN + N L+ EI   +S    L  ++   N     L 
Sbjct: 125 QNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD 165

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 63.5 bits (155), Expect = 3e-12
 Identities = 35/163 (21%), Positives = 63/163 (38%), Gaps = 14/163 (8%)

Query: 17  IGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDL 76
              L+  V+ +L    ++  +      L+ +   + + +NI       +    NL  L L
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ--SLAGMQFFTNLKELHL 70

Query: 77  SMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPA 136
           S N++S   P  + +L  L  L++++N L          L  L     L  N L      
Sbjct: 71  SHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSACLSRL----FLDNNELRDTDS- 123

Query: 137 QLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 179
            L  L  L+ L++ +N L   I   L  +  L  ++L  N + 
Sbjct: 124 -LIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEIT 163

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 60.0 bits (146), Expect = 4e-11
 Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 16/141 (11%)

Query: 17  IGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGL--LNLDSL 74
           +   + L ELHLS NQ+S ++   + +LT+L  LS+N N +       + G+    L  L
Sbjct: 59  MQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRNRLK-----NLNGIPSACLSRL 111

Query: 75  DLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEI 134
            L  N L       +  L++L IL++  NN + +I   +G L  L+ L DL  N +T   
Sbjct: 112 FLDNNELRDTDS--LIHLKNLEILSIR-NNKLKSIVM-LGFLSKLEVL-DLHGNEITNTG 166

Query: 135 PAQLGKLTRLQSLNLSHNNLS 155
              L +L ++  ++L+     
Sbjct: 167 G--LTRLKKVNWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 27/128 (21%), Positives = 51/128 (39%), Gaps = 12/128 (9%)

Query: 52  LNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPF 111
                I+ Q+     GL N    +L    ++  +     EL  ++  N   +N+      
Sbjct: 4   QRPTPIN-QV-FPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAGM 59

Query: 112 QIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAV 171
           Q      L++L  LS+N ++ ++   L  LT+L+ L+++ N L      +      L  +
Sbjct: 60  Q--FFTNLKEL-HLSHNQIS-DLSP-LKDLTKLEELSVNRNRLKN---LNGIPSACLSRL 111

Query: 172 NLSYNNLE 179
            L  N L 
Sbjct: 112 FLDNNELR 119

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 24/141 (17%), Positives = 51/141 (36%), Gaps = 14/141 (9%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L L  N +  +    +  L  L  L + +N+L   I   +G L++L  L L+GN I+   
Sbjct: 111 LFLDNNEL--RDTDSLIHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEITN-- 164

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
              +  L  ++ +DL+          +           L   N +     +  +   + +
Sbjct: 165 TGGLTRLKKVNWIDLT--------GQKCVNEPVKYQPELYITNTVKDPDGRWISPYYISN 216

Query: 122 LQDLSYNSLTGEIPAQLGKLT 142
                   +  E+P    +++
Sbjct: 217 GGSYVDGCVLWELPVYTDEVS 237

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 61.6 bits (150), Expect = 5e-12
 Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 10/144 (6%)

Query: 22  QLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL 81
           + VELH     +  ++ A +  L     L+L+ NNI  +I   + G+ NL  L L  N +
Sbjct: 26  EKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLI 82

Query: 82  SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLT--GEIPAQLG 139
              I N       L  L +S  N I ++   I  LV L+ L  +S N +T  GEI  +L 
Sbjct: 83  KK-IENLDAVADTLEELWIS-YNQIASLS-GIEKLVNLRVL-YMSNNKITNWGEI-DKLA 137

Query: 140 KLTRLQSLNLSHNNLSGEIPASLS 163
            L +L+ L L+ N L  +   + +
Sbjct: 138 ALDKLEDLLLAGNPLYNDYKENNA 161

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 6/103 (5%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L L+ N+I  KI + +  +  L  L L  N +  +I         L  L ++ N I+  +
Sbjct: 53  LALSTNNIE-KI-SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SL 108

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIP-NQIGELRDLRILNLSQN 103
              I  L+NL  L +S N+++     +++  L  L  L L+ N
Sbjct: 109 -SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 38.1 bits (89), Expect = 9e-04
 Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 5/90 (5%)

Query: 91  ELRDLRILNLS-QNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNL 149
              +   + L      I  +   +  L   + L  LS N++  +I + L  +  L+ L+L
Sbjct: 21  VATEAEKVELHGMIPPIEKMDATLSTLKACKHL-ALSTNNIE-KI-SSLSGMENLRILSL 77

Query: 150 SHNNLSGEIPASLSSMLSLVAVNLSYNNLE 179
             N +  +I    +   +L  + +SYN + 
Sbjct: 78  GRNLIK-KIENLDAVADTLEELWISYNQIA 106

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 59.6 bits (143), Expect = 1e-10
 Identities = 33/193 (17%), Positives = 64/193 (33%), Gaps = 23/193 (11%)

Query: 11  GKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGG--L 68
             +   + ++  L  L +                  L +L +    +   + E+I G  L
Sbjct: 162 VDLSPVLDAMPLLNNLKIKGTNNLSIGKKP---RPNLKSLEIISGGLPDSVVEDILGSDL 218

Query: 69  LNLDSLDLSMNRLSGPIPNQIGELRD---------LRILNLSQNNLIGTIPFQIGNLVGL 119
            NL+ L L +          +   R          L+ L +        +         L
Sbjct: 219 PNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDIL 278

Query: 120 QDLQ--DLSYNSLTGE----IPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNL 173
             L+  D+S   LT E    +   + K+  L+ +N+ +N LS E+   L   L    + +
Sbjct: 279 PQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLP---MKI 335

Query: 174 SYNNLEGPLPDGS 186
             ++ +    D S
Sbjct: 336 DVSDSQEYDDDYS 348

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 34/152 (22%), Positives = 64/152 (42%), Gaps = 10/152 (6%)

Query: 29  SSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEI-GGLLNLDSLDLSMNRLSGPIPN 87
           S+ +L+ +IP HI      + L LN N  +      I   L  L  ++ S N+++     
Sbjct: 19  SNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG 75

Query: 88  QIGELRDLRILNLSQNNLIGTIPFQI-GNLVGLQDLQDLSYNSLTGEIPAQL-GKLTRLQ 145
                  +  + L+ N L   +  ++   L  L+ L  L  N +T  +       L+ ++
Sbjct: 76  AFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTL-MLRSNRIT-CVGNDSFIGLSSVR 132

Query: 146 SLNLSHNNLSGEIPASLSSMLSLVAVNLSYNN 177
            L+L  N ++   P +  ++ SL  +NL   N
Sbjct: 133 LLSLYDNQITTVAPGAFDTLHSLSTLNL-LAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 51.2 bits (123), Expect = 4e-08
 Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 8/106 (7%)

Query: 2   LGLAGNSIGGKIPAEI-GSLSQLVELHLSSNQLSGEIPAHI-GNLTELSTLSLNGNNISG 59
           +  + N I   I        S + E+ L+SN+L   +   +   L  L TL L  N I+ 
Sbjct: 62  INFSNNKIT-DIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRIT- 118

Query: 60  QIPEEI-GGLLNLDSLDLSMNRLSGPIPNQI-GELRDLRILNLSQN 103
            +  +   GL ++  L L  N+++  +       L  L  LNL  N
Sbjct: 119 CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.4 bits (121), Expect = 7e-08
 Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 11/128 (8%)

Query: 2   LGLAGNSIGGKIP-AEIGSLSQLVELHLSSNQLSGEIPAHI-GNLTELSTLSLNGNNISG 59
           L L  N             L QL +++ S+N+++ +I        + ++ + L  N +  
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLEN 95

Query: 60  QIPEEI-GGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIP---FQIGN 115
            +  ++  GL +L +L L  NR++    +    L  +R+L+L  N +  T+    F    
Sbjct: 96  -VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI-TTVAPGAFD--T 151

Query: 116 LVGLQDLQ 123
           L  L  L 
Sbjct: 152 LHSLSTLN 159

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.0 bits (138), Expect = 4e-10
 Identities = 37/151 (24%), Positives = 58/151 (38%), Gaps = 9/151 (5%)

Query: 29  SSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQ 88
               L+ EIP ++        + L  N I    P        L  +DLS N++S   P+ 
Sbjct: 19  RGKGLT-EIPTNLPETIT--EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA 75

Query: 89  IGELRDLRILNLSQNNLIGTIPFQI-GNLVGLQDLQDLSYNSLTGEIPAQL-GKLTRLQS 146
              LR L  L L  N +   +P  +   L  LQ L  L+ N +   +       L  L  
Sbjct: 76  FQGLRSLNSLVLYGNKI-TELPKSLFEGLFSLQLL-LLNANKIN-CLRVDAFQDLHNLNL 132

Query: 147 LNLSHNNLSGEIPASLSSMLSLVAVNLSYNN 177
           L+L  N L      + S + ++  ++L   N
Sbjct: 133 LSLYDNKLQTIAKGTFSPLRAIQTMHL-AQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 56.6 bits (137), Expect = 5e-10
 Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 8/126 (6%)

Query: 2   LGLAGNSIGGKIPAEI-GSLSQLVELHLSSNQLSGEIPAHI-GNLTELSTLSLNGNNISG 59
           + L  N+I   IP        +L  + LS+NQ+S E+       L  L++L L GN I+ 
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT- 93

Query: 60  QIPEEI-GGLLNLDSLDLSMNRLSGPIPNQI-GELRDLRILNLSQNNLIGTIPFQIGNLV 117
           ++P+ +  GL +L  L L+ N+++  +      +L +L +L+L  N L          L 
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152

Query: 118 GLQDLQ 123
            +Q + 
Sbjct: 153 AIQTMH 158

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.8 bits (122), Expect = 5e-08
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 6/105 (5%)

Query: 2   LGLAGNSIGGKIPAEI-GSLSQLVELHLSSNQLSGEIPAHI-GNLTELSTLSLNGNNISG 59
           + L+ N I  ++  +    L  L  L L  N+++ E+P  +   L  L  L LN N I+ 
Sbjct: 61  IDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN- 117

Query: 60  QIPEEI-GGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQN 103
            +  +    L NL+ L L  N+L          LR ++ ++L+QN
Sbjct: 118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 57.4 bits (138), Expect = 5e-10
 Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 4/95 (4%)

Query: 13  IPAEIGSLSQLVELHLSSNQLSGEIPAH-IGNLTELSTLSLNGNNISGQIPEEI-GGLLN 70
               +     L EL++ + Q    +    +  L EL  L++  + +   +  +       
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPR 81

Query: 71  LDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNL 105
           L  L+LS N L   +  +  +   L+ L LS N L
Sbjct: 82  LSRLNLSFNALES-LSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.8 bits (126), Expect = 2e-08
 Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 1/77 (1%)

Query: 30  SNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEE-IGGLLNLDSLDLSMNRLSGPIPNQ 88
           +   + +   H+     L+ L +        +    + GL  L +L +  + L    P+ 
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 89  IGELRDLRILNLSQNNL 105
                 L  LNLS N L
Sbjct: 76  FHFTPRLSRLNLSFNAL 92

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.9 bits (108), Expect = 4e-06
 Identities = 18/122 (14%), Positives = 34/122 (27%), Gaps = 25/122 (20%)

Query: 78  MNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQ 137
               +    + +    +L  L +     +  +                            
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLE------------------------LRD 51

Query: 138 LGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFT 197
           L  L  L++L +  + L    P +      L  +NLS+N LE  L   +V   S      
Sbjct: 52  LRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES-LSWKTVQGLSLQELVL 110

Query: 198 NN 199
           + 
Sbjct: 111 SG 112

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 55.9 bits (135), Expect = 1e-09
 Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 18/172 (10%)

Query: 13  IPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEI-GGLLNL 71
           +P+ I + ++  +L L S  L+    A    LT+L+ L+L+ N +   +   +   L  L
Sbjct: 29  VPSGIPADTE--KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTEL 85

Query: 72  DSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIP---FQIGNLVGLQDLQDLSYN 128
            +L L+ N+L+         L  L  L L  N L  ++P   F    L  L++L  L+ N
Sbjct: 86  GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL-KSLPSGVFD--RLTKLKEL-RLNTN 141

Query: 129 SLTGEIPAQLG---KLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNN 177
            L   IPA  G   KLT LQ+L+LS N L      +   +  L  + L + N
Sbjct: 142 QLQ-SIPA--GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL-FGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.0 bits (125), Expect = 3e-08
 Identities = 50/158 (31%), Positives = 72/158 (45%), Gaps = 14/158 (8%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHI-GNLTELSTLSLNGNNISGQ 60
           L L    +     A    L++L  L+L  NQL   + A +  +LTEL TL L  N ++  
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLA-S 97

Query: 61  IPEEI-GGLLNLDSLDLSMNRLSGPIPNQI-GELRDLRILNLSQNNLIGTIP---FQIGN 115
           +P  +   L  LD L L  N+L   +P+ +   L  L+ L L+ N L  +IP   F    
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQL-QSIPAGAFD--K 153

Query: 116 LVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNN 153
           L  LQ L  LS N L         +L +LQ++ L   N
Sbjct: 154 LTNLQTL-SLSTNQLQSVPHGAFDRLGKLQTITL-FGN 189

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 27/135 (20%)

Query: 19  SLSQLVELHLSSNQLS-GEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLS 77
           + S + EL L +++ + G++        EL  LS     ++  I   +  L  L  L+LS
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELS 72

Query: 78  MNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQ 137
            NR+SG +     +  +L  LNLS N               ++DL  +            
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNK--------------IKDLSTIEP---------- 108

Query: 138 LGKLTRLQSLNLSHN 152
           L KL  L+SL+L + 
Sbjct: 109 LKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 4/104 (3%)

Query: 2   LGLAGNSIG-GKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ 60
           L L  +    GK+        +L  L   +  L+  I A++  L +L  L L+ N +SG 
Sbjct: 22  LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSGG 79

Query: 61  IPEEIGGLLNLDSLDLSMNRLSGP-IPNQIGELRDLRILNLSQN 103
           +        NL  L+LS N++        + +L +L+ L+L   
Sbjct: 80  LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 24/111 (21%), Positives = 41/111 (36%), Gaps = 28/111 (25%)

Query: 70  NLDSLDLSMNRLS-GPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYN 128
           ++  L L  +R + G +     E  +L  L+                  GL  + +L   
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV--------------GLTSIANLP-- 61

Query: 129 SLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 179
                      KL +L+ L LS N +SG +        +L  +NLS N ++
Sbjct: 62  -----------KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 53.6 bits (129), Expect = 3e-09
 Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 27/135 (20%)

Query: 19  SLSQLVELHLSSNQLS-GEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLS 77
           + + + EL L + + + G+I         L  LSL    +   +   +  L  L  L+LS
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELS 79

Query: 78  MNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQ 137
            NR+ G +     +L +L  LNLS N               L+D+  L            
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNK--------------LKDISTLEP---------- 115

Query: 138 LGKLTRLQSLNLSHN 152
           L KL  L+SL+L + 
Sbjct: 116 LKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.7 bits (111), Expect = 9e-07
 Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 4/103 (3%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L    ++ G KI         L  L L +  L   + +++  L +L  L L+ N I G +
Sbjct: 31  LDNCKSNDG-KIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGL 87

Query: 62  PEEIGGLLNLDSLDLSMNRLSGP-IPNQIGELRDLRILNLSQN 103
                 L NL  L+LS N+L        + +L  L+ L+L   
Sbjct: 88  DMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 5/89 (5%)

Query: 91  ELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLS 150
            +R+L +L+  ++N  G I       V L+ L  L    L   + + L KL +L+ L LS
Sbjct: 25  AVREL-VLDNCKSN-DGKIEGLTAEFVNLEFL-SLINVGLI-SV-SNLPKLPKLKKLELS 79

Query: 151 HNNLSGEIPASLSSMLSLVAVNLSYNNLE 179
            N + G +      + +L  +NLS N L+
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 55.0 bits (133), Expect = 3e-09
 Identities = 48/140 (34%), Positives = 65/140 (46%), Gaps = 7/140 (5%)

Query: 17  IGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEI-GGLLNLDSLD 75
           I  L  +  L L  N+L  +I A +  LT L+ L L GN +   +P  +   L NL  L 
Sbjct: 59  IQYLPNVRYLALGGNKLH-DISA-LKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELV 115

Query: 76  LSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIP 135
           L  N+L         +L +L  LNL+ N L          L  L +L DLSYN L   +P
Sbjct: 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL-DLSYNQLQ-SLP 173

Query: 136 AQL-GKLTRLQSLNLSHNNL 154
             +  KLT+L+ L L  N L
Sbjct: 174 EGVFDKLTQLKDLRLYQNQL 193

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 29/112 (25%), Positives = 42/112 (37%), Gaps = 7/112 (6%)

Query: 43  NLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQ 102
           N      L L G  I   I      L   D++D S N +   +      LR L+ L ++ 
Sbjct: 17  NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDG-FPLLRRLKTLLVNN 73

Query: 103 NNLIGTIPFQIGNLVGLQDLQDLSYNSLT--GEIPAQLGKLTRLQSLNLSHN 152
           N +          L  L +L  L+ NSL   G++   L  L  L  L +  N
Sbjct: 74  NRICRIGEGLDQALPDLTEL-ILTNNSLVELGDL-DPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 4/103 (3%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L L G  I   I     +L Q   +  S N++  ++      L  L TL +N N I    
Sbjct: 24  LDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIG 80

Query: 62  PEEIGGLLNLDSLDLSMNRLSGP-IPNQIGELRDLRILNLSQN 103
                 L +L  L L+ N L      + +  L+ L  L + +N
Sbjct: 81  EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.3 bits (105), Expect = 6e-06
 Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 88  QIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSL 147
           Q       R L+L +   I  I      L     + D S N +  ++      L RL++L
Sbjct: 14  QYTNAVRDRELDL-RGYKIPVIENLGATLDQFDAI-DFSDNEIR-KL-DGFPLLRRLKTL 69

Query: 148 NLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 179
            +++N +         ++  L  + L+ N+L 
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 35/196 (17%), Positives = 59/196 (30%), Gaps = 37/196 (18%)

Query: 19  SLSQLVELHLSSNQLSGEIPAHIGNL----TELSTLSLNGNNIS-------------GQI 61
              +L  + LS N         + +     T L  L L+ N +                +
Sbjct: 92  KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAV 151

Query: 62  PEEIGGLLNLDSLDLSMNRLSGP----IPNQIGELRDLRILNLSQNNL-----IGTIPFQ 112
            ++      L S+    NRL               R L  + + QN +        +   
Sbjct: 152 NKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG 211

Query: 113 IGNLVGLQDLQDLSYNSLTGE----IPAQLGKLTRLQSLNLSHNNLSGEIPASLSSML-- 166
           +     L+ L DL  N+ T      +   L     L+ L L+   LS    A++      
Sbjct: 212 LAYCQELKVL-DLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 270

Query: 167 ----SLVAVNLSYNNL 178
                L  + L YN +
Sbjct: 271 LENIGLQTLRLQYNEI 286

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 32/221 (14%), Positives = 61/221 (27%), Gaps = 45/221 (20%)

Query: 2   LGLAGNSIGGK----IPAEIGSLSQLVELHLSSNQLSGE----IPAHIGNLTELSTLSLN 53
             L  ++I  +    + A +     + E+ LS N +  E    +  +I +  +L     +
Sbjct: 9   KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 68

Query: 54  GNNISGQIPEEIGGLL----------NLDSLDLSMNRLSGPIPNQIGEL----RDLRILN 99
                    E    L            L ++ LS N         + +       L  L 
Sbjct: 69  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 128

Query: 100 LSQNNL-------------IGTIPFQIGNLVGLQDLQDLSYNSLTGE----IPAQLGKLT 142
           L  N L                +  +  N   L+ +     N L                
Sbjct: 129 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSI-ICGRNRLENGSMKEWAKTFQSHR 187

Query: 143 RLQSLNLSHNNLSGE-----IPASLSSMLSLVAVNLSYNNL 178
            L ++ +  N +  E     +   L+    L  ++L  N  
Sbjct: 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 34/173 (19%), Positives = 55/173 (31%), Gaps = 27/173 (15%)

Query: 21  SQLVELHLSSNQLSGEIPAHIG----NLTELSTLSLNGNNISGQ-IPEEIGGLL----NL 71
             L  +    N+L             +   L T+ +  N I  + I   +   L     L
Sbjct: 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL 218

Query: 72  DSLDLSMNRLSGP----IPNQIGELRDLRILNLSQNNL--IGTIPF----QIGNLVGLQD 121
             LDL  N  +      +   +    +LR L L+   L   G             +GLQ 
Sbjct: 219 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQT 278

Query: 122 LQDLSYNSLTGE-----IPAQLGKLTRLQSLNLSHNNLS--GEIPASLSSMLS 167
           L  L YN +  +           K+  L  L L+ N  S   ++   +  + S
Sbjct: 279 L-RLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFS 330

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 47.8 bits (114), Expect = 6e-07
 Identities = 39/124 (31%), Positives = 55/124 (44%), Gaps = 5/124 (4%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHI-GNLTELSTLSLNGNNISGQ 60
           L L  N I    P    SL  L EL+L SNQL   +P  +  +LT+L+ L L  N ++  
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT-V 102

Query: 61  IPEEI-GGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGL 119
           +P  +   L++L  L +  N+L+  +P  I  L  L  L L QN L          L  L
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161

Query: 120 QDLQ 123
               
Sbjct: 162 THAY 165

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 39/141 (27%), Positives = 56/141 (39%), Gaps = 6/141 (4%)

Query: 13  IPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEI-GGLLNL 71
           +PA I + +Q   L+L  NQ++   P    +L  L  L L  N +   +P  +   L  L
Sbjct: 34  VPAGIPTNAQ--ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQL 90

Query: 72  DSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLT 131
             LDL  N+L+         L  L+ L +  N L   +P  I  L  L  L  L  N L 
Sbjct: 91  TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHL-ALDQNQLK 148

Query: 132 GEIPAQLGKLTRLQSLNLSHN 152
                   +L+ L    L  N
Sbjct: 149 SIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 42/142 (29%), Positives = 61/142 (42%), Gaps = 7/142 (4%)

Query: 37  IPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLR 96
           +PA I    +   L L+ N I+   P     L+NL  L L  N+L          L  L 
Sbjct: 34  VPAGIPTNAQ--ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLT 91

Query: 97  ILNLSQNNLIGTIPFQI-GNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLS 155
           +L+L  N L   +P  +   LV L++L  +  N LT E+P  + +LT L  L L  N L 
Sbjct: 92  VLDLGTNQL-TVLPSAVFDRLVHLKEL-FMCCNKLT-ELPRGIERLTHLTHLALDQNQLK 148

Query: 156 GEIPASLSSMLSLVAVNLSYNN 177
                +   + SL    L + N
Sbjct: 149 SIPHGAFDRLSSLTHAYL-FGN 169

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 48.4 bits (116), Expect = 6e-07
 Identities = 37/208 (17%), Positives = 69/208 (33%), Gaps = 31/208 (14%)

Query: 2   LGLAGNSIGGKIPAEIGSL-----SQLVELHLSSNQLSGEIPAHIG----NLTELSTLSL 52
           L L+ N +G      +         +L +L L    LS      +        +   L++
Sbjct: 118 LHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 177

Query: 53  NGNNISGQIPEEIGGLL-----NLDSLDLSMNRLSGPIPNQIGEL----RDLRILNLSQN 103
           + N+I+      +   L      L++L L    ++      +  +      LR L L  N
Sbjct: 178 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 237

Query: 104 NL--IGTIPFQIGNLVGLQDLQ--DLSYNSLTGE----IPAQLGKLTRLQSLNLSHNNLS 155
            L  +G      G L     L+   +    +T +    +   L     L+ L+L+ N L 
Sbjct: 238 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297

Query: 156 GEIPASLSSML-----SLVAVNLSYNNL 178
            E    L   L      L ++ +   + 
Sbjct: 298 DEGARLLCETLLEPGCQLESLWVKSCSF 325

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 48.0 bits (115), Expect = 8e-07
 Identities = 38/205 (18%), Positives = 67/205 (32%), Gaps = 29/205 (14%)

Query: 2   LGLAGNSIGGKIPAEIGS-LSQLVELHLSSNQLSGE----IPAHIGNLTELSTLSLNGNN 56
           L +    +     AE+   L Q   + L    L+      I + +     L+ L+L  N 
Sbjct: 8   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 67

Query: 57  ISGQIPEEIGGLL-----NLDSLDLSMNRLSGPIPNQIGEL----RDLRILNLSQNNLIG 107
           +       +   L      +  L L    L+G     +         L+ L+LS N L  
Sbjct: 68  LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD 127

Query: 108 TIPFQIGNLV-----GLQDLQDLSYNSLTGEIPAQLGKL----TRLQSLNLSHNNLSGEI 158
                +   +      L+ L  L Y SL+      L  +       + L +S+N+++   
Sbjct: 128 AGLQLLCEGLLDPQCRLEKL-QLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG 186

Query: 159 PASLSSML-----SLVAVNLSYNNL 178
              L   L      L A+ L    +
Sbjct: 187 VRVLCQGLKDSPCQLEALKLESCGV 211

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 36/200 (18%), Positives = 61/200 (30%), Gaps = 44/200 (22%)

Query: 2   LGLAGNSIGGK----IPAEIGSLSQLVELHLSSNQLSGEIPAHIG-----NLTELSTLSL 52
           L L    + G     + + + +L  L ELHLS N L       +          L  L L
Sbjct: 90  LSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQL 149

Query: 53  NGNNISGQIPEEIGGLL----NLDSLDLSMNRLSGPIPNQIGE-LRD----LRILNLSQN 103
              ++S    E +  +L    +   L +S N ++      + + L+D    L  L L   
Sbjct: 150 EYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC 209

Query: 104 NLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGE-----I 158
            +               + +DL            +     L+ L L  N L         
Sbjct: 210 GV------------TSDNCRDLC---------GIVASKASLRELALGSNKLGDVGMAELC 248

Query: 159 PASLSSMLSLVAVNLSYNNL 178
           P  L     L  + +    +
Sbjct: 249 PGLLHPSSRLRTLWIWECGI 268

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 38/193 (19%), Positives = 69/193 (35%), Gaps = 28/193 (14%)

Query: 2   LGLAGNSIGGK----IPAEIGSLSQLVELHLSSNQLSGEIPAHIGNL-----TELSTLSL 52
           L +    I  K    +   + +   L EL L+ N+L  E    +         +L +L +
Sbjct: 261 LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320

Query: 53  NGNNISGQIPEEIGGLL----NLDSLDLSMNRLSGPIPNQIGEL-----RDLRILNLSQN 103
              + +         +L     L  L +S NRL      ++ +        LR+L L+  
Sbjct: 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC 380

Query: 104 NL----IGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKL-----TRLQSLNLSHNNL 154
           ++      ++   +     L++L DLS N L      QL +        L+ L L     
Sbjct: 381 DVSDSSCSSLAATLLANHSLREL-DLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

Query: 155 SGEIPASLSSMLS 167
           S E+   L ++  
Sbjct: 440 SEEMEDRLQALEK 452

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 40/206 (19%), Positives = 68/206 (33%), Gaps = 28/206 (13%)

Query: 2   LGLAGNSIGGK-----IPAEIGSLSQLVELHLSSNQLSGE----IPAHIGNLTELSTLSL 52
           L L  N +G        P  +   S+L  L +    ++ +    +   +     L  LSL
Sbjct: 232 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSL 291

Query: 53  NGNNISGQIPEEIGGLL-----NLDSLDLSMNRLSG----PIPNQIGELRDLRILNLSQN 103
            GN +  +    +   L      L+SL +     +        + + + R L  L +S N
Sbjct: 292 AGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN 351

Query: 104 NL--IGTIPFQIG---NLVGLQDLQDLSYNSLTGE----IPAQLGKLTRLQSLNLSHNNL 154
            L   G      G       L+ L  L+   ++      + A L     L+ L+LS+N L
Sbjct: 352 RLEDAGVRELCQGLGQPGSVLRVL-WLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410

Query: 155 SGEIPASLSSMLSLVAVNLSYNNLEG 180
                  L   +      L    L  
Sbjct: 411 GDAGILQLVESVRQPGCLLEQLVLYD 436

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 45.0 bits (107), Expect = 9e-06
 Identities = 35/200 (17%), Positives = 61/200 (30%), Gaps = 44/200 (22%)

Query: 2   LGLAGNSIGGK----IPAEIGSLSQLVELHLSSNQLSGE-----IPAHIGNLTELSTLSL 52
           L L    +       +   + S + L EL L SN+L         P  +   + L TL +
Sbjct: 204 LKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI 263

Query: 53  NGNNISGQIPEEIGGLL----NLDSLDLSMNRLSGPIPNQIGELRD-----LRILNLSQN 103
               I+ +   ++  +L    +L  L L+ N L       + E        L  L +   
Sbjct: 264 WECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323

Query: 104 NLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLS 163
           +                     S         + L +   L  L +S+N L       L 
Sbjct: 324 SF------------TAACCSHFS---------SVLAQNRFLLELQISNNRLEDAGVRELC 362

Query: 164 SML-----SLVAVNLSYNNL 178
             L      L  + L+  ++
Sbjct: 363 QGLGQPGSVLRVLWLADCDV 382

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 33/173 (19%), Positives = 55/173 (31%), Gaps = 36/173 (20%)

Query: 21  SQLVELHLSSNQLSGEIPAHIG-NLTELSTLSLNGNNISGQIPEEIGGLL----NLDSLD 75
             +  L +   +LS    A +   L +   + L+   ++    ++I   L     L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 76  LSMNRLSGPIPNQIGEL-----RDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSL 130
           L  N L     + + +        ++ L+L    L                   LS    
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL------------TGAGCGVLS---- 106

Query: 131 TGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSML-----SLVAVNLSYNNL 178
                + L  L  LQ L+LS N L       L   L      L  + L Y +L
Sbjct: 107 -----STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL 154

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 47.3 bits (113), Expect = 6e-07
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 5/83 (6%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHI-GNLTELSTLSLNGNNISGQ 60
           L L GN     +P E+ +   L  + LS+N++S  +      N+T+L TL L+ N +   
Sbjct: 36  LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLR-C 92

Query: 61  IPEEI-GGLLNLDSLDLSMNRLS 82
           IP     GL +L  L L  N +S
Sbjct: 93  IPPRTFDGLKSLRLLSLHGNDIS 115

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 44.6 bits (106), Expect = 6e-06
 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 10/88 (11%)

Query: 72  DSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIP---FQIGNLVGLQDLQDLSYN 128
             L L  N+ +  +P ++   + L +++LS NN I T+    F   N+  L  L  LSYN
Sbjct: 34  TELYLDGNQFTL-VPKELSNYKHLTLIDLS-NNRISTLSNQSFS--NMTQLLTL-ILSYN 88

Query: 129 SLTGEIPAQL-GKLTRLQSLNLSHNNLS 155
            L   IP +    L  L+ L+L  N++S
Sbjct: 89  RLR-CIPPRTFDGLKSLRLLSLHGNDIS 115

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 38.0 bits (89), Expect = 9e-04
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 124 DLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLP 183
            L  N  T  +P +L     L  ++LS+N +S     S S+M  L+ + LSYN L   +P
Sbjct: 37  YLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-IP 94

Query: 184 DGSVF 188
               F
Sbjct: 95  PR-TF 98

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 35/170 (20%), Positives = 62/170 (36%), Gaps = 9/170 (5%)

Query: 15  AEIGSLSQLVELHLSSNQLS-GEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDS 73
           AE  S  ++  + LS++ +    +   +   ++L  LSL G  +S  I   +    NL  
Sbjct: 87  AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVR 146

Query: 74  LDLSM-NRLSGPIPNQIGE-LRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLS----Y 127
           L+LS  +  S      +      L  LNLS          Q+      + +  L+     
Sbjct: 147 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206

Query: 128 NSLTGEIPAQLGK-LTRLQSLNLSH-NNLSGEIPASLSSMLSLVAVNLSY 175
            +L     + L +    L  L+LS    L  +       +  L  ++LS 
Sbjct: 207 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR 256

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 9/107 (8%)

Query: 2   LGLAGNSIGGKIPAE--IGSLSQLVELHLSSNQLSGEIPAHI-GNLTELSTLSLNGNNIS 58
           L L  N +G +I ++   G L  LV+L L  NQL+  I  +     + +  L L  N I 
Sbjct: 34  LLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIK 91

Query: 59  GQIPEEI-GGLLNLDSLDLSMNRLSGPIPNQI-GELRDLRILNLSQN 103
            +I  ++  GL  L +L+L  N++S  +       L  L  LNL+ N
Sbjct: 92  -EISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 7/97 (7%)

Query: 12  KIPAEIGSLSQLVELHLSSNQLSGEIPAHI-GNLTELSTLSLNGNNISGQIPEEI-GGLL 69
           +IP +I   +   EL L+ N+L       + G L  L  L L  N ++G I      G  
Sbjct: 22  EIPRDIPLHTT--ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGAS 78

Query: 70  NLDSLDLSMNRLSGPIPNQI-GELRDLRILNLSQNNL 105
           ++  L L  N++   I N++   L  L+ LNL  N +
Sbjct: 79  HIQELQLGENKIKE-ISNKMFLGLHQLKTLNLYDNQI 114

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 38/232 (16%), Positives = 80/232 (34%), Gaps = 32/232 (13%)

Query: 2   LGLAGNSIGGKIPAEIGSL-----SQLVELHLSSNQLSGEIPAHIGNL-----TELSTLS 51
           L L  N    K  +E         + +  L+L  N L  +    +  +       +++L+
Sbjct: 114 LDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLN 173

Query: 52  LNGNNISGQIPEEIGGLL-----NLDSLDLSMNRLSGPIPNQIGEL-----RDLRILNLS 101
           L GNN++ +   E+   L     ++ SLDLS N L      ++  +       +  LNL 
Sbjct: 174 LRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLC 233

Query: 102 QNNLIGTIPFQIGNLVG----LQDLQDLSYNSLTGEIPAQ-------LGKLTRLQSLNLS 150
            N L G     +  L      LQ +  L Y+ +      Q          + ++  ++ +
Sbjct: 234 LNCLHGPSLENLKLLKDSLKHLQTV-YLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKN 292

Query: 151 HNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDL 202
              +       +S+++  ++      +L       +    +         +L
Sbjct: 293 GKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDEL 344

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 42.4 bits (100), Expect = 6e-05
 Identities = 37/178 (20%), Positives = 72/178 (40%), Gaps = 40/178 (22%)

Query: 21  SQLVELHLSSNQLSGEIPAHIG-----NLTELSTLSLNGNNISGQIPEEIGGLL-----N 70
             +  L LS N L       +          +++L+L+GN++  +  +E+  +L     N
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81

Query: 71  LDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSL 130
           + SL+LS N LS    +++ +        L+                 +  L DL +N  
Sbjct: 82  VTSLNLSGNFLSYKSSDELVKT-------LAAIPF------------TITVL-DLGWNDF 121

Query: 131 TGEIPAQLGKL-----TRLQSLNLSHNNLSGEIPASLSSML-----SLVAVNLSYNNL 178
           + +  ++  +        + SLNL  N+L  +    L  +L     ++ ++NL  NNL
Sbjct: 122 SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL 179

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 36/120 (30%), Positives = 52/120 (43%), Gaps = 7/120 (5%)

Query: 37  IPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLR 96
           +P  I   T    L L  N++          L +L  L L  N+L         +L  L 
Sbjct: 22  VPTGIPAQTT--YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLT 79

Query: 97  ILNLSQNNLIGTIPFQI-GNLVGLQDLQDLSYNSLTGEIPAQL-GKLTRLQSLNLSHNNL 154
            LNLS N L  ++P  +   L  L++L  L+ N L   +P  +  KLT+L+ L L  N L
Sbjct: 80  YLNLSTNQL-QSLPNGVFDKLTQLKEL-ALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQL 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 41.6 bits (98), Expect = 7e-05
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 6/107 (5%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGN-LTELSTLSLNGNNISGQ 60
           L L  NS+          L+ L +L+L  N+L   +P  + N LT L+ L+L+ N +   
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ-S 90

Query: 61  IPEEI-GGLLNLDSLDLSMNRLSGPIPNQI-GELRDLRILNLSQNNL 105
           +P  +   L  L  L L+ N+L   +P+ +  +L  L+ L L QN L
Sbjct: 91  LPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQL 136

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.8 bits (101), Expect = 5e-05
 Identities = 36/182 (19%), Positives = 67/182 (36%), Gaps = 24/182 (13%)

Query: 20  LSQLVELHLSSNQLSGEIPAHIG-----NLTELSTLSLNGNNISGQIPEEIG-GLLNLDS 73
           LS L +L+L+  +++      +          L  ++L    +       +    L    
Sbjct: 71  LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARK 130

Query: 74  LDLSMNRLSGPIPNQIGE-LRD----LRILNLSQNNL----IGTIPFQIGNLVGLQDLQD 124
           L L +N L       + + L      +  L LS N L    +  +   +     +  L  
Sbjct: 131 LGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHL-S 189

Query: 125 LSYNSLTGE----IPAQLGKLTRLQSLNLSHNNLSGEIPASLSSML----SLVAVNLSYN 176
           L +  L  E    + AQL +  +LQ LN+++N        +L+       SL  ++L +N
Sbjct: 190 LLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN 249

Query: 177 NL 178
            L
Sbjct: 250 EL 251

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	237
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.96
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.94
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.94
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.94
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.93
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.93
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.93
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.93
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.93
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.92
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.92
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.92
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.92
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.92
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.92
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.92
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.91
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.91
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.91
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.91
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.9
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.9
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.9
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.9
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.9
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.9
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.89
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.89
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.89
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.89
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.89
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.89
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.89
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.88
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.88
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.88
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.88
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.87
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.87
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.87
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.87
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.87
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.86
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.86
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.86
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.85
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.85
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.85
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.85
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.85
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.85
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.84
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.84
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.84
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.84
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.83
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.83
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.83
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.83
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.82
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.82
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.82
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.82
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.81
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.78
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.78
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.78
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.77
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.76
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.76
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.76
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.76
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.76
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.76
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.76
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.75
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.74
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.73
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.73
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.73
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.72
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.72
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.72
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.71
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.7
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.67
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.67
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.67
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.66
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.62
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.59
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.58
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.57
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.57
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.56
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.54
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.5
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.45
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.45
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.42
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.42
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.4
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.37
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.36
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.32
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.29
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.96
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.81
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.75
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.64
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.6
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.56
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.55
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.52
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.52
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.5
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.44
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.42
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.37
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.75
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.68
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.22
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.89
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	91.65

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.97  E-value=2.7e-31  Score=238.29  Aligned_cols=214  Identities=38%  Similarity=0.626  Sum_probs=183.0

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL   81 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i   81 (237)
                      |++++|++++..|..+..+++|++|++++|++.+..|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|.+
T Consensus       471 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  550 (768)
T 3rgz_A          471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF  550 (768)
T ss_dssp             EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred             EEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence            67778888877787788888888888888888877788888888888888888888878888888888888888888877


Q ss_pred             cCcccccc----------------------------------------------------------------------cC
Q 038699           82 SGPIPNQI----------------------------------------------------------------------GE   91 (237)
Q Consensus        82 ~~~~~~~~----------------------------------------------------------------------~~   91 (237)
                      .+.+|..+                                                                      ..
T Consensus       551 ~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~  630 (768)
T 3rgz_A          551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN  630 (768)
T ss_dssp             ESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSS
T ss_pred             CCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhc
Confidence            65555432                                                                      23


Q ss_pred             CCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEE
Q 038699           92 LRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAV  171 (237)
Q Consensus        92 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  171 (237)
                      +++|+.|++++|.+++..|..++.+++|+.| ++++|.+++..|..+..+++|+.|++++|.+++..|..+..+++|++|
T Consensus       631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L-~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L  709 (768)
T 3rgz_A          631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL-NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI  709 (768)
T ss_dssp             SBCCCEEECCSSCCBSCCCGGGGGCTTCCEE-ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred             cccccEEECcCCcccccCCHHHhccccCCEE-eCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence            4678889999999998999999999999999 999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCcCcCCCCCCCccCCCccchhccCCcccccCCCCCCCCCCccC
Q 038699          172 NLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCGKVQGLRPCNALSTD  218 (237)
Q Consensus       172 ~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~l~~~~~~~~~C~~~~~~  218 (237)
                      ++++|+++|.+|....+..+....+.+|+.+||.+.  ..|.....+
T Consensus       710 ~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l--~~C~~~~~~  754 (768)
T 3rgz_A          710 DLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL--PRCDPSNAD  754 (768)
T ss_dssp             ECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTS--CCCCSCC--
T ss_pred             ECcCCcccccCCCchhhccCCHHHhcCCchhcCCCC--cCCCCCccC
Confidence            999999999999999999999999999999999874  478765333

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=1.1e-31  Score=217.17  Aligned_cols=207  Identities=34%  Similarity=0.586  Sum_probs=138.4

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCC-CCCEEEccCCc
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLL-NLDSLDLSMNR   80 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~   80 (237)
                      |++++|++++..|..|..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..|..+..++ +|++|++++|.
T Consensus       106 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~  185 (313)
T 1ogq_A          106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR  185 (313)
T ss_dssp             EEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred             EECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence            44444444444444444445555555555554444444444555555555555555444444444444 45555555555


Q ss_pred             CcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCc
Q 038699           81 LSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPA  160 (237)
Q Consensus        81 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  160 (237)
                      +.+..|..+..++ |++|++++|.+.+..+..+..+++|+.| ++++|.+.+..+. +..+++|++|++++|.+++..|.
T Consensus       186 l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L-~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~  262 (313)
T 1ogq_A          186 LTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKI-HLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQ  262 (313)
T ss_dssp             EEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEE-ECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCG
T ss_pred             eeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEE-ECCCCceeeecCc-ccccCCCCEEECcCCcccCcCCh
Confidence            5444444454444 5555555555555566667777777777 7777777644444 67788899999999999888899


Q ss_pred             cccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCCcccccCCCCCCCC
Q 038699          161 SLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCGKVQGLRPCN  213 (237)
Q Consensus       161 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~l~~~~~~~~~C~  213 (237)
                      .+..+++|++|++++|++++.+|....++++..+++.+|+.+||.+.  ..|+
T Consensus       263 ~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~--~~C~  313 (313)
T 1ogq_A          263 GLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL--PACT  313 (313)
T ss_dssp             GGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTS--SCCC
T ss_pred             HHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCC--CCCC
Confidence            99999999999999999999999988899999999999999999764  3574

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=7.7e-29  Score=197.80  Aligned_cols=205  Identities=24%  Similarity=0.219  Sum_probs=184.5

Q ss_pred             CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCc-ccccCcccccCCCCCCEEEccCC
Q 038699            1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNN-ISGQIPEEIGGLLNLDSLDLSMN   79 (237)
Q Consensus         1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n   79 (237)
                      +|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|. ++...+..+..+++|++|++++|
T Consensus        36 ~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n  115 (285)
T 1ozn_A           36 RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC  115 (285)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             EEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCC
Confidence            37899999998888889999999999999999997778899999999999999997 87666888999999999999999


Q ss_pred             cCcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccC
Q 038699           80 RLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIP  159 (237)
Q Consensus        80 ~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  159 (237)
                      .+.+..+..+..+++|++|++++|.+....+..+..+++|+.| ++++|.+++..+..+..+++|+.|++++|.+++..|
T Consensus       116 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  194 (285)
T 1ozn_A          116 GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL-FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP  194 (285)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE-ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             cCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEE-ECCCCcccccCHHHhcCccccCEEECCCCcccccCH
Confidence            9997778889999999999999999987777779999999999 999999997777789999999999999999998889


Q ss_pred             ccccCCCCCCEEEcCCCcCcCCCCC-CCccCCCccchhccCCcccccC
Q 038699          160 ASLSSMLSLVAVNLSYNNLEGPLPD-GSVFSSSQSSAFTNNKDLCGKV  206 (237)
Q Consensus       160 ~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~l~~~~l~~n~~l~~~~  206 (237)
                      ..+..+++|++|++++|++++..+. ...++.++.+++.+|+..|...
T Consensus       195 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~  242 (285)
T 1ozn_A          195 HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             hHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence            9999999999999999999976554 4667889999999999887543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=3.9e-29  Score=202.20  Aligned_cols=196  Identities=31%  Similarity=0.461  Sum_probs=124.6

Q ss_pred             EEecCCcCCC--CCCcccCCCCCCcEEEccC-CcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccC
Q 038699            2 LGLAGNSIGG--KIPAEIGSLSQLVELHLSS-NQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSM   78 (237)
Q Consensus         2 L~l~~n~~~~--~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   78 (237)
                      |+|++|++++  .+|..|..+++|++|++++ |.+.+.+|..|..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus        55 L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~  134 (313)
T 1ogq_A           55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY  134 (313)
T ss_dssp             EEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCS
T ss_pred             EECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCC
Confidence            6777777777  6777777777777777774 777766777777777777777777777766777777777777777777


Q ss_pred             CcCcCcccccccCCCCCCEEEccCCcccccCCccccCcc-CccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCc
Q 038699           79 NRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLV-GLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGE  157 (237)
Q Consensus        79 n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  157 (237)
                      |.+.+.+|..+..+++|++|++++|.+++..|..+..++ +|+.| ++++|.+.+..+..+..+. |+.|++++|.+++.
T Consensus       135 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L-~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~  212 (313)
T 1ogq_A          135 NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM-TISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGD  212 (313)
T ss_dssp             SEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEE-ECCSSEEEEECCGGGGGCC-CSEEECCSSEEEEC
T ss_pred             CccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEE-ECcCCeeeccCChHHhCCc-ccEEECcCCcccCc
Confidence            777766666777777777777777777666666666665 66666 6666666655555555544 55555555555544


Q ss_pred             cCccccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccC
Q 038699          158 IPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNN  199 (237)
Q Consensus       158 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n  199 (237)
                      .+..+..+++|++|++++|++++.++....+++++.+++.+|
T Consensus       213 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N  254 (313)
T 1ogq_A          213 ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNN  254 (313)
T ss_dssp             CGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSS
T ss_pred             CCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCC
Confidence            444444444444444444444433333333333444444333

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.96  E-value=4e-28  Score=217.82  Aligned_cols=205  Identities=40%  Similarity=0.609  Sum_probs=165.3

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL   81 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i   81 (237)
                      |++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++.+|..++.+++|++|++++|.+
T Consensus       447 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l  526 (768)
T 3rgz_A          447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF  526 (768)
T ss_dssp             EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred             EECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcc
Confidence            56777777777777777777777777777777777777777777788888888777777777777788888888888888


Q ss_pred             cCcccccccCCCCCCEEEccCCcccccCCccc------------------------------------------------
Q 038699           82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQI------------------------------------------------  113 (237)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~------------------------------------------------  113 (237)
                      .+.+|..+..+++|+.|++++|.+.+..|..+                                                
T Consensus       527 ~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  606 (768)
T 3rgz_A          527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR  606 (768)
T ss_dssp             EEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGG
T ss_pred             cCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhc
Confidence            77777778888888888888887765555432                                                


Q ss_pred             ----------------------cCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEE
Q 038699          114 ----------------------GNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAV  171 (237)
Q Consensus       114 ----------------------~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  171 (237)
                                            ..+++|+.| ++++|++++..|..+..++.|+.|++++|.+++.+|..++.+++|+.|
T Consensus       607 l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~L-dLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L  685 (768)
T 3rgz_A          607 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFL-DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL  685 (768)
T ss_dssp             GGGTCCSCTTSCEEEEECCCSCSSSBCCCEE-ECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred             cccccccccccceecccCchhhhccccccEE-ECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEE
Confidence                                  234567778 889999988899999999999999999999999999999999999999


Q ss_pred             EcCCCcCcCCCCCC-CccCCCccchhccCCcccccCCC
Q 038699          172 NLSYNNLEGPLPDG-SVFSSSQSSAFTNNKDLCGKVQG  208 (237)
Q Consensus       172 ~l~~n~l~~~~~~~-~~~~~l~~~~l~~n~~l~~~~~~  208 (237)
                      |+++|++++.+|.. ..+..++.+++++| .+.|.+|.
T Consensus       686 dLs~N~l~g~ip~~l~~l~~L~~L~ls~N-~l~g~iP~  722 (768)
T 3rgz_A          686 DLSSNKLDGRIPQAMSALTMLTEIDLSNN-NLSGPIPE  722 (768)
T ss_dssp             ECCSSCCEECCCGGGGGCCCCSEEECCSS-EEEEECCS
T ss_pred             ECCCCcccCcCChHHhCCCCCCEEECcCC-cccccCCC
Confidence            99999999888865 56788999999988 58888875

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.95  E-value=1.1e-26  Score=183.97  Aligned_cols=200  Identities=25%  Similarity=0.273  Sum_probs=171.8

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL   81 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i   81 (237)
                      +++++++++. +|..+.  +++++|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|++++|.+
T Consensus        21 l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l   97 (270)
T 2o6q_A           21 VDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL   97 (270)
T ss_dssp             EECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCC
T ss_pred             EEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcC
Confidence            7888899985 454443  6799999999999977777899999999999999999866666678899999999999999


Q ss_pred             cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCcc
Q 038699           82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPAS  161 (237)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  161 (237)
                      .+..+..+..+++|++|++++|.++...+..+..+++|+.| ++++|.++...+..|..+++|+.|++++|.+++..+..
T Consensus        98 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  176 (270)
T 2o6q_A           98 QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYL-SLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGA  176 (270)
T ss_dssp             CCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEE-ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred             CcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEE-ECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhH
Confidence            86666778899999999999999987777788999999999 99999998777777889999999999999999777777


Q ss_pred             ccCCCCCCEEEcCCCcCcCCCCC-CCccCCCccchhccCCccccc
Q 038699          162 LSSMLSLVAVNLSYNNLEGPLPD-GSVFSSSQSSAFTNNKDLCGK  205 (237)
Q Consensus       162 ~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~l~~~~l~~n~~l~~~  205 (237)
                      |..+++|++|++++|++++..+. ...++.++.+++.+|++.|..
T Consensus       177 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  221 (270)
T 2o6q_A          177 FDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC  221 (270)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred             hccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence            88999999999999999965554 345788999999999987764

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=1.7e-27  Score=193.72  Aligned_cols=208  Identities=20%  Similarity=0.282  Sum_probs=181.1

Q ss_pred             CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699            1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR   80 (237)
Q Consensus         1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   80 (237)
                      .|+|++|+++ .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.
T Consensus        85 ~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~  161 (328)
T 4fcg_A           85 ALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACP  161 (328)
T ss_dssp             EEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEET
T ss_pred             EEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCC
Confidence            3899999998 66777888999999999999999 88888999999999999999999 788899999999999999988


Q ss_pred             CcCcccccccC---------CCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcC
Q 038699           81 LSGPIPNQIGE---------LRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSH  151 (237)
Q Consensus        81 i~~~~~~~~~~---------l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~  151 (237)
                      +.+.+|..+..         +++|++|++++|.++ .+|..+..+++|+.| ++++|.+. ..+..+..+++|+.|++++
T Consensus       162 ~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L-~L~~N~l~-~l~~~l~~l~~L~~L~Ls~  238 (328)
T 4fcg_A          162 ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSL-KIRNSPLS-ALGPAIHHLPKLEELDLRG  238 (328)
T ss_dssp             TCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEE-EEESSCCC-CCCGGGGGCTTCCEEECTT
T ss_pred             CccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEE-EccCCCCC-cCchhhccCCCCCEEECcC
Confidence            87788876654         999999999999998 778889999999999 99999998 5666789999999999999


Q ss_pred             CcCcCccCccccCCCCCCEEEcCCCcCcCCCCCC-CccCCCccchhccCCcccccCCCCCCCCC
Q 038699          152 NNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDG-SVFSSSQSSAFTNNKDLCGKVQGLRPCNA  214 (237)
Q Consensus       152 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~l~~~~l~~n~~l~~~~~~~~~C~~  214 (237)
                      |.+.+..|..+..+++|++|++++|.+.+.+|.. ..++.++.+++.+|+.....|..+..+..
T Consensus       239 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~  302 (328)
T 4fcg_A          239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA  302 (328)
T ss_dssp             CTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred             CcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence            9998899999999999999999999998888854 56788999999998655544444444443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=8.6e-28  Score=191.75  Aligned_cols=207  Identities=26%  Similarity=0.228  Sum_probs=179.7

Q ss_pred             CEEecCCcCCCCCCcccCCCCCCcEEEccCCc-CCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCC
Q 038699            1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQ-LSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMN   79 (237)
Q Consensus         1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   79 (237)
                      +|++++|.+++..+..|..+++|++|++++|. +....+..|..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus        60 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  139 (285)
T 1ozn_A           60 ILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN  139 (285)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC
Confidence            48999999999889999999999999999997 77666888999999999999999999777888999999999999999


Q ss_pred             cCcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccC
Q 038699           80 RLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIP  159 (237)
Q Consensus        80 ~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  159 (237)
                      .+.+..+..+..+++|++|++++|.+++..+..+..+++|+.| ++++|.+.+..+..+..+++|+.|++++|.+++..+
T Consensus       140 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  218 (285)
T 1ozn_A          140 ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL-LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT  218 (285)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE-ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred             cccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEE-ECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH
Confidence            9996666778999999999999999987777779999999999 999999998889999999999999999999997666


Q ss_pred             ccccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCCcccccCCC
Q 038699          160 ASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCGKVQG  208 (237)
Q Consensus       160 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~l~~~~~~  208 (237)
                      ..+..+++|++|++++|++.+..+.......++.+....+...|..|..
T Consensus       219 ~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p~~  267 (285)
T 1ozn_A          219 EALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQR  267 (285)
T ss_dssp             HHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGG
T ss_pred             HHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCchH
Confidence            7799999999999999999865554333333444555566666766553

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.95  E-value=6.4e-27  Score=185.86  Aligned_cols=204  Identities=26%  Similarity=0.256  Sum_probs=177.1

Q ss_pred             CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699            1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR   80 (237)
Q Consensus         1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   80 (237)
                      +|++++|++++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus        32 ~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  111 (276)
T 2z62_A           32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN  111 (276)
T ss_dssp             EEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             EEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCC
Confidence            38999999998888889999999999999999997777789999999999999999997777889999999999999999


Q ss_pred             CcCcccccccCCCCCCEEEccCCccccc-CCccccCccCccccccCcCcccccccChhhcCCCCCC----eEeCcCCcCc
Q 038699           81 LSGPIPNQIGELRDLRILNLSQNNLIGT-IPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQ----SLNLSHNNLS  155 (237)
Q Consensus        81 i~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~----~L~l~~n~l~  155 (237)
                      +.+..+..+..+++|++|++++|.+.+. .|..+..+++|+.| ++++|.+++..+..+..+.+|+    .|++++|.++
T Consensus       112 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L-~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~  190 (276)
T 2z62_A          112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL-DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN  190 (276)
T ss_dssp             CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE-ECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCC
T ss_pred             ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEE-ECCCCCCCcCCHHHhhhhhhccccceeeecCCCccc
Confidence            9866666789999999999999999864 58899999999999 9999999977777777777777    8999999998


Q ss_pred             CccCccccCCCCCCEEEcCCCcCcCCCCCC-CccCCCccchhccCCcccccC
Q 038699          156 GEIPASLSSMLSLVAVNLSYNNLEGPLPDG-SVFSSSQSSAFTNNKDLCGKV  206 (237)
Q Consensus       156 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~l~~~~l~~n~~l~~~~  206 (237)
                      +..+..+ ...+|++|++++|++++..+.. ..++.++.+++.+|+..|..+
T Consensus       191 ~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          191 FIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             EECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             ccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            5555544 4458999999999999666554 568889999999999888653

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=1.3e-26  Score=195.74  Aligned_cols=201  Identities=27%  Similarity=0.264  Sum_probs=150.7

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL   81 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i   81 (237)
                      |+|++|+++...+..|..+++|++|+|++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|++++|.+
T Consensus        69 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i  148 (440)
T 3zyj_A           69 LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI  148 (440)
T ss_dssp             EECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCC
T ss_pred             EEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcc
Confidence            67777777777767777777777777777777765666677777777777777777755455666677777777777666


Q ss_pred             cCcccc-------------------------cccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccCh
Q 038699           82 SGPIPN-------------------------QIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPA  136 (237)
Q Consensus        82 ~~~~~~-------------------------~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~  136 (237)
                      ....+.                         .+..+++|++|++++|.++ .+| .+..+++|+.| ++++|.+++..+.
T Consensus       149 ~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L-~Ls~N~l~~~~~~  225 (440)
T 3zyj_A          149 ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDEL-DLSGNHLSAIRPG  225 (440)
T ss_dssp             CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEE-ECTTSCCCEECTT
T ss_pred             cccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEE-ECCCCccCccChh
Confidence            533332                         3445566666666666665 333 36677788888 8888888877788


Q ss_pred             hhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCC-CccCCCccchhccCCccccc
Q 038699          137 QLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDG-SVFSSSQSSAFTNNKDLCGK  205 (237)
Q Consensus       137 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~l~~~~l~~n~~l~~~  205 (237)
                      .|..+++|+.|++++|.+++..+..|..+++|++|++++|++++..+.. ..++.++.+++.+|++.|..
T Consensus       226 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC  295 (440)
T 3zyj_A          226 SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNC  295 (440)
T ss_dssp             TTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred             hhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCC
Confidence            8999999999999999999888888999999999999999999666554 45788999999999988854

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.95  E-value=4.5e-26  Score=182.30  Aligned_cols=196  Identities=26%  Similarity=0.238  Sum_probs=171.9

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL   81 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i   81 (237)
                      +++++++++.+ |..+.  ++++.|++++|.+++..+..|..+++|++|++++|.+++. +.. ..+++|++|++++|.+
T Consensus        15 l~~~~~~l~~i-p~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~L~Ls~N~l   89 (290)
T 1p9a_G           15 VNCDKRNLTAL-PPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGTLDLSHNQL   89 (290)
T ss_dssp             EECTTSCCSSC-CSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCEEECCSSCC
T ss_pred             EECCCCCCCcC-CCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCCEEECCCCcC
Confidence            78889999854 44443  6899999999999988888899999999999999999854 332 7899999999999999


Q ss_pred             cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCcc
Q 038699           82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPAS  161 (237)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  161 (237)
                      . .+|..+..+++|++|++++|.+++..+..+..+++|+.| ++++|+++...+..|..+++|+.|++++|.++...+..
T Consensus        90 ~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L-~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~  167 (290)
T 1p9a_G           90 Q-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL-YLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL  167 (290)
T ss_dssp             S-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEE-ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTT
T ss_pred             C-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEE-ECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHH
Confidence            8 678888999999999999999997777889999999999 99999999787888889999999999999999766677


Q ss_pred             ccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCCcccc
Q 038699          162 LSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCG  204 (237)
Q Consensus       162 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~l~~  204 (237)
                      +..+++|++|++++|+++...+.......+..+.+.+|++.|.
T Consensus       168 ~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          168 LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             hcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCc
Confidence            8889999999999999996666666677899999999999884

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=2.2e-26  Score=194.96  Aligned_cols=201  Identities=25%  Similarity=0.242  Sum_probs=156.9

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL   81 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i   81 (237)
                      |+|++|++++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|++++|.+
T Consensus        80 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  159 (452)
T 3zyi_A           80 LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI  159 (452)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCC
T ss_pred             EECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCc
Confidence            77888888877777788888888888888888866667777888888888888887765556677777888888877777


Q ss_pred             cCccccc-------------------------ccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccCh
Q 038699           82 SGPIPNQ-------------------------IGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPA  136 (237)
Q Consensus        82 ~~~~~~~-------------------------~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~  136 (237)
                      ....+..                         +..+++|++|++++|.+.+. | .+..+++|+.| ++++|.+++..+.
T Consensus       160 ~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L-~Ls~N~l~~~~~~  236 (452)
T 3zyi_A          160 ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEEL-EMSGNHFPEIRPG  236 (452)
T ss_dssp             CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEE-ECTTSCCSEECGG
T ss_pred             ceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEE-ECcCCcCcccCcc
Confidence            6433333                         44556666666666666532 3 46677788888 8888888877788


Q ss_pred             hhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCC-CccCCCccchhccCCccccc
Q 038699          137 QLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDG-SVFSSSQSSAFTNNKDLCGK  205 (237)
Q Consensus       137 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~l~~~~l~~n~~l~~~  205 (237)
                      .|..+++|+.|++++|.+++..+..|..+++|++|++++|++++..+.. ..+++++.+++.+|++.|..
T Consensus       237 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC  306 (452)
T 3zyi_A          237 SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDC  306 (452)
T ss_dssp             GGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECST
T ss_pred             cccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCC
Confidence            8999999999999999999888888999999999999999999666554 45788999999999987753

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.94  E-value=8.8e-26  Score=178.83  Aligned_cols=183  Identities=25%  Similarity=0.272  Sum_probs=165.9

Q ss_pred             CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699            1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR   80 (237)
Q Consensus         1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   80 (237)
                      .|++++|++++..+..|..+++|++|++++|.++...+..|..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus        41 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  120 (270)
T 2o6q_A           41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ  120 (270)
T ss_dssp             EEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSC
T ss_pred             EEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCc
Confidence            38999999998888899999999999999999997667778899999999999999997777788999999999999999


Q ss_pred             CcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCc
Q 038699           81 LSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPA  160 (237)
Q Consensus        81 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  160 (237)
                      +++..+..+..+++|++|++++|.+.+..+..+..+++|+.| ++++|.++...+..|..+++|+.|++++|.+++..+.
T Consensus       121 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L-~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  199 (270)
T 2o6q_A          121 LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKEL-RLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEG  199 (270)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE-ECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             cCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccccee-EecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHH
Confidence            997777788999999999999999997767778999999999 9999999977778899999999999999999977777


Q ss_pred             cccCCCCCCEEEcCCCcCcCCCCC
Q 038699          161 SLSSMLSLVAVNLSYNNLEGPLPD  184 (237)
Q Consensus       161 ~~~~~~~L~~L~l~~n~l~~~~~~  184 (237)
                      .+..+++|+.|++++|++....+.
T Consensus       200 ~~~~l~~L~~L~l~~N~~~c~c~~  223 (270)
T 2o6q_A          200 AFDSLEKLKMLQLQENPWDCTCNG  223 (270)
T ss_dssp             TTTTCTTCCEEECCSSCBCCSSSS
T ss_pred             HhccccCCCEEEecCCCeeCCCcc
Confidence            788999999999999999865543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=1.4e-26  Score=188.38  Aligned_cols=194  Identities=22%  Similarity=0.326  Sum_probs=174.8

Q ss_pred             CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccC---------CCCC
Q 038699            1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGG---------LLNL   71 (237)
Q Consensus         1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------l~~L   71 (237)
                      +|+|++|.++ .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+.+|..+..         +++|
T Consensus       108 ~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L  185 (328)
T 4fcg_A          108 HMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNL  185 (328)
T ss_dssp             EEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTC
T ss_pred             EEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCC
Confidence            4899999999 88888999999999999999999 77888999999999999998887788877654         9999


Q ss_pred             CEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcC
Q 038699           72 DSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSH  151 (237)
Q Consensus        72 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~  151 (237)
                      ++|++++|.++ .+|..+..+++|++|++++|.+. ..|..+..+++|+.| ++++|.+.+..|..+..+++|+.|++++
T Consensus       186 ~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L-~Ls~n~~~~~~p~~~~~l~~L~~L~L~~  262 (328)
T 4fcg_A          186 QSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEEL-DLRGCTALRNYPPIFGGRAPLKRLILKD  262 (328)
T ss_dssp             CEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEE-ECTTCTTCCBCCCCTTCCCCCCEEECTT
T ss_pred             CEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEE-ECcCCcchhhhHHHhcCCCCCCEEECCC
Confidence            99999999999 78888999999999999999998 466679999999999 9999999889999999999999999999


Q ss_pred             CcCcCccCccccCCCCCCEEEcCCCcCcCCCCCC-CccCCCccchhccC
Q 038699          152 NNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDG-SVFSSSQSSAFTNN  199 (237)
Q Consensus       152 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~l~~~~l~~n  199 (237)
                      |.+.+..|..+..+++|++|++++|++.+.+|.. ..++.+..+.+..+
T Consensus       263 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             CTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred             CCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence            9998899999999999999999999999888865 45666666666544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=2.2e-26  Score=185.27  Aligned_cols=202  Identities=28%  Similarity=0.261  Sum_probs=128.3

Q ss_pred             CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCc--cCccccCCCCCCEEeccCCcccccCcc---------------
Q 038699            1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGE--IPAHIGNLTELSTLSLNGNNISGQIPE---------------   63 (237)
Q Consensus         1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~---------------   63 (237)
                      +|++++|+++...+..|..+++|++|++++|.+...  .+..+..+++|++|++++|.++ .++.               
T Consensus        32 ~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~  110 (306)
T 2z66_A           32 RLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQH  110 (306)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTT
T ss_pred             EEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCC
Confidence            378888988866666688888888888888887632  1334444555555555555544 2333               


Q ss_pred             ----------cccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccc-cCCccccCccCccccccCcCccccc
Q 038699           64 ----------EIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIG-TIPFQIGNLVGLQDLQDLSYNSLTG  132 (237)
Q Consensus        64 ----------~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~~l~~n~~~~  132 (237)
                                .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..+++|+.| ++++|.+++
T Consensus       111 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L-~Ls~n~l~~  189 (306)
T 2z66_A          111 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL-DLSQCQLEQ  189 (306)
T ss_dssp             SEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE-ECTTSCCCE
T ss_pred             CcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEE-ECCCCCcCC
Confidence                      44455555555555555554444555566666666666666654 355566666677777 777777666


Q ss_pred             ccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCC-Ccc-CCCccchhccCCcccc
Q 038699          133 EIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDG-SVF-SSSQSSAFTNNKDLCG  204 (237)
Q Consensus       133 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~-~~l~~~~l~~n~~l~~  204 (237)
                      ..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+.. ..+ +.+..+++.+|+.-|.
T Consensus       190 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          190 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred             cCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence            65666666777777777777776555556666777777777777777655543 333 3677777777766553

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.94  E-value=5e-26  Score=192.61  Aligned_cols=120  Identities=23%  Similarity=0.182  Sum_probs=91.6

Q ss_pred             cccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCC
Q 038699           86 PNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSM  165 (237)
Q Consensus        86 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  165 (237)
                      +..+..+++|++|++++|.+.+..+..+..+++|+.| ++++|.+++..+..+..+++|+.|++++|.+++..|..+..+
T Consensus       292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L-~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  370 (455)
T 3v47_A          292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL-NLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL  370 (455)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE-ECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEE-ECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccc
Confidence            3445566777777777777776667777778888888 888888876667777888888888888888887667788888


Q ss_pred             CCCCEEEcCCCcCcCCCCCC-CccCCCccchhccCCcccccC
Q 038699          166 LSLVAVNLSYNNLEGPLPDG-SVFSSSQSSAFTNNKDLCGKV  206 (237)
Q Consensus       166 ~~L~~L~l~~n~l~~~~~~~-~~~~~l~~~~l~~n~~l~~~~  206 (237)
                      ++|++|++++|++++..+.. ..++.++.+++.+|+..|..+
T Consensus       371 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          371 PNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             ccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            88888888888888655543 467788888888888777654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=6.5e-26  Score=182.57  Aligned_cols=193  Identities=25%  Similarity=0.275  Sum_probs=129.3

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCccccc--CcccccCCCCCCEEEccCC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ--IPEEIGGLLNLDSLDLSMN   79 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n   79 (237)
                      ++.++++++.. |..+.  +++++|++++|.++...+..|..+++|++|++++|.++..  .+..+..+++|++|++++|
T Consensus        12 l~c~~~~l~~i-p~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n   88 (306)
T 2z66_A           12 IRCNSKGLTSV-PTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN   88 (306)
T ss_dssp             EECCSSCCSSC-CSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred             EEcCCCCcccC-CCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence            57788888744 44432  6899999999999965566689999999999999998733  2566677889999999999


Q ss_pred             cCcCcccccccCCCCCCEEEccCCcccccCC-ccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcC-c
Q 038699           80 RLSGPIPNQIGELRDLRILNLSQNNLIGTIP-FQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSG-E  157 (237)
Q Consensus        80 ~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~  157 (237)
                      .+. .++..+..+++|++|++++|.+.+..+ ..+..+++|+.| ++++|.+....+..+..+++|+.|++++|.+++ .
T Consensus        89 ~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  166 (306)
T 2z66_A           89 GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL-DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF  166 (306)
T ss_dssp             SEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEE-ECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred             ccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEE-ECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence            887 456567777777777777777764433 356666666666 666666655555555556666666666665553 3


Q ss_pred             cCccccCCCCCCEEEcCCCcCcCCCCC-CCccCCCccchhccC
Q 038699          158 IPASLSSMLSLVAVNLSYNNLEGPLPD-GSVFSSSQSSAFTNN  199 (237)
Q Consensus       158 ~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~l~~~~l~~n  199 (237)
                      .|..+..+++|++|++++|++++..|. ...+++++.+++.+|
T Consensus       167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N  209 (306)
T 2z66_A          167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN  209 (306)
T ss_dssp             ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred             chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCC
Confidence            455555555555555555555544332 233445555555544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.94  E-value=8.2e-26  Score=177.15  Aligned_cols=179  Identities=26%  Similarity=0.289  Sum_probs=160.1

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL   81 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i   81 (237)
                      +++++++++. +|..+.  ++++.|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus        19 l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l   95 (251)
T 3m19_A           19 VDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL   95 (251)
T ss_dssp             EECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             EecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcc
Confidence            6888999984 454443  6899999999999988888899999999999999999988888899999999999999999


Q ss_pred             cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCcc
Q 038699           82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPAS  161 (237)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  161 (237)
                      ++..+..+..+++|++|++++|.+++..+..+..+++|+.| ++++|.+++..+..|..+++|+.|++++|.+++..+..
T Consensus        96 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L-~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  174 (251)
T 3m19_A           96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKEL-RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA  174 (251)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE-ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred             cccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEE-ECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHH
Confidence            97777788999999999999999997777778999999999 99999999777778999999999999999999777778


Q ss_pred             ccCCCCCCEEEcCCCcCcCCCCC
Q 038699          162 LSSMLSLVAVNLSYNNLEGPLPD  184 (237)
Q Consensus       162 ~~~~~~L~~L~l~~n~l~~~~~~  184 (237)
                      +..+++|++|++++|++.+....
T Consensus       175 ~~~l~~L~~L~l~~N~~~c~~~~  197 (251)
T 3m19_A          175 FDRLGKLQTITLFGNQFDCSRCE  197 (251)
T ss_dssp             TTTCTTCCEEECCSCCBCTTSTT
T ss_pred             HhCCCCCCEEEeeCCceeCCccc
Confidence            99999999999999999876444

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.94  E-value=4.3e-26  Score=177.44  Aligned_cols=194  Identities=16%  Similarity=0.180  Sum_probs=160.4

Q ss_pred             CEEecCCcCCCCCCcccCCCCCCcEEEccCCc-CCCccCccccCCCCCCEEeccC-CcccccCcccccCCCCCCEEEccC
Q 038699            1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQ-LSGEIPAHIGNLTELSTLSLNG-NNISGQIPEEIGGLLNLDSLDLSM   78 (237)
Q Consensus         1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~   78 (237)
                      +|++++|++++..+..|..+++|++|++++|. ++...+..|..+++|++|++++ |.+++..+..|..+++|++|++++
T Consensus        35 ~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~  114 (239)
T 2xwt_C           35 TLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFN  114 (239)
T ss_dssp             EEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEE
T ss_pred             EEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCC
Confidence            37899999998888889999999999999997 8766666888999999999998 888876677888999999999999


Q ss_pred             CcCcCcccccccCCCCCC---EEEccCC-cccccCCccccCccCcc-ccccCcCcccccccChhhcCCCCCCeEeCcCCc
Q 038699           79 NRLSGPIPNQIGELRDLR---ILNLSQN-NLIGTIPFQIGNLVGLQ-DLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNN  153 (237)
Q Consensus        79 n~i~~~~~~~~~~l~~L~---~L~l~~n-~~~~~~~~~~~~l~~L~-~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~  153 (237)
                      |.+++ +|. +..+++|+   +|++++| .+....+..+..+++|+ .+ ++++|.++...+..|.. ++|+.|++++|.
T Consensus       115 n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L-~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~  190 (239)
T 2xwt_C          115 TGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTL-KLYNNGFTSVQGYAFNG-TKLDAVYLNKNK  190 (239)
T ss_dssp             ECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEE-ECCSCCCCEECTTTTTT-CEEEEEECTTCT
T ss_pred             CCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEE-EcCCCCCcccCHhhcCC-CCCCEEEcCCCC
Confidence            99884 565 77888887   9999999 88866667788899999 99 99999988555555655 789999999995


Q ss_pred             -CcCccCccccCC-CCCCEEEcCCCcCcCCCCCCCccCCCccchhccCC
Q 038699          154 -LSGEIPASLSSM-LSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNK  200 (237)
Q Consensus       154 -l~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~  200 (237)
                       ++...+..|..+ ++|++|++++|++++ +|.. .++.++.+.+.++.
T Consensus       191 ~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~-~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          191 YLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK-GLEHLKELIARNTW  237 (239)
T ss_dssp             TCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT-TCTTCSEEECTTC-
T ss_pred             CcccCCHHHhhccccCCcEEECCCCcccc-CChh-HhccCceeeccCcc
Confidence             886667788888 899999999999984 4443 67888888877764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.94  E-value=8.6e-25  Score=177.84  Aligned_cols=206  Identities=25%  Similarity=0.302  Sum_probs=132.7

Q ss_pred             CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCccc----------------
Q 038699            1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEE----------------   64 (237)
Q Consensus         1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----------------   64 (237)
                      +|++++|++++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|.++ .+|..                
T Consensus        56 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~~L~~L~l~~n~l~  134 (330)
T 1xku_A           56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEIT  134 (330)
T ss_dssp             EEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCCTTCCEEECCSSCCC
T ss_pred             EEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhcccccEEECCCCccc
Confidence            3788888888877778888899999999999888777888888888888888888877 33433                


Q ss_pred             ------ccCCCCCCEEEccCCcCcC--cccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccCh
Q 038699           65 ------IGGLLNLDSLDLSMNRLSG--PIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPA  136 (237)
Q Consensus        65 ------~~~l~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~  136 (237)
                            +..+++|++|++++|.+..  ..+..+..+++|++|++++|.+.. .|..+.  ++|+.| ++++|.+++..+.
T Consensus       135 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L-~l~~n~l~~~~~~  210 (330)
T 1xku_A          135 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTEL-HLDGNKITKVDAA  210 (330)
T ss_dssp             BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEE-ECTTSCCCEECTG
T ss_pred             ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEE-ECCCCcCCccCHH
Confidence                  3344445555555444431  223344445555555555554442 222221  455556 6666666655566


Q ss_pred             hhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCCcccccCCCCCCCC
Q 038699          137 QLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCGKVQGLRPCN  213 (237)
Q Consensus       137 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~l~~~~~~~~~C~  213 (237)
                      .+..+++|+.|++++|.+++..+..+..+++|++|++++|+++........++.++.+++.+|. +.+.++. .+|.
T Consensus       211 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~-~f~~  285 (330)
T 1xku_A          211 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIGSN-DFCP  285 (330)
T ss_dssp             GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC-CCCCCTT-SSSC
T ss_pred             HhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCc-CCccChh-hcCC
Confidence            6777777777777777777655666777777777777777777444445556677777777763 4433332 4443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=2.4e-25  Score=188.58  Aligned_cols=200  Identities=21%  Similarity=0.208  Sum_probs=143.5

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL   81 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i   81 (237)
                      ++.++.+++. +|..+.  ++++.|+|++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+
T Consensus        59 v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l  135 (452)
T 3zyi_A           59 VVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL  135 (452)
T ss_dssp             EECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             EEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence            4556667764 454443  6899999999999988889999999999999999999988888999999999999999999


Q ss_pred             cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcC-cccccccChhhc---------------------
Q 038699           82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSY-NSLTGEIPAQLG---------------------  139 (237)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~-n~~~~~~~~~~~---------------------  139 (237)
                      +...+..+..+++|++|++++|.+....+..+..+++|+.| ++++ +.+....+..|.                     
T Consensus       136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L-~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~  214 (452)
T 3zyi_A          136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL-DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNL  214 (452)
T ss_dssp             SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEE-ECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCC
T ss_pred             CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEE-eCCCCCCccccChhhccCCCCCCEEECCCCcccccccc
Confidence            96666779999999999999999886555556555555555 5555 223322233344                     


Q ss_pred             -CCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCC-CccCCCccchhccCCcccccC
Q 038699          140 -KLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDG-SVFSSSQSSAFTNNKDLCGKV  206 (237)
Q Consensus       140 -~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~l~~~~l~~n~~l~~~~  206 (237)
                       .+++|+.|++++|.+++..+..|..+++|++|++++|++++..+.. ..+++++.+++.+| .+.+.+
T Consensus       215 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~  282 (452)
T 3zyi_A          215 TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLP  282 (452)
T ss_dssp             TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCC
T ss_pred             cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccC
Confidence             4455555555555555555566666666666666666666544432 34566777777766 344433

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.94  E-value=8.5e-25  Score=178.04  Aligned_cols=195  Identities=23%  Similarity=0.261  Sum_probs=126.5

Q ss_pred             CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699            1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR   80 (237)
Q Consensus         1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   80 (237)
                      +|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.++ .+|..+.  ++|++|++++|.
T Consensus        58 ~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~  134 (332)
T 2ft3_A           58 LLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNR  134 (332)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSC
T ss_pred             EEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCc
Confidence            3788888888877778888899999999998888777888888888888888888887 4454433  577777777777


Q ss_pred             CcCcccccccCCCCCCEEEccCCcccc--cCCccccCc--------------------cCccccccCcCcccccccChhh
Q 038699           81 LSGPIPNQIGELRDLRILNLSQNNLIG--TIPFQIGNL--------------------VGLQDLQDLSYNSLTGEIPAQL  138 (237)
Q Consensus        81 i~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~l--------------------~~L~~L~~l~~n~~~~~~~~~~  138 (237)
                      +....+..+..+++|++|++++|.+..  ..+..+..+                    ++|+.| ++++|.+++..+..+
T Consensus       135 i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L-~l~~n~i~~~~~~~l  213 (332)
T 2ft3_A          135 IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNEL-HLDHNKIQAIELEDL  213 (332)
T ss_dssp             CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCC-BCCSSCCCCCCTTSS
T ss_pred             cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEE-ECCCCcCCccCHHHh
Confidence            765444556667777777777766642  222222222                    344555 555555554444555


Q ss_pred             cCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccC
Q 038699          139 GKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNN  199 (237)
Q Consensus       139 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n  199 (237)
                      ..+++|+.|++++|.+++..+..+..+++|++|++++|+++...+....++.++.+++.+|
T Consensus       214 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N  274 (332)
T 2ft3_A          214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTN  274 (332)
T ss_dssp             TTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSS
T ss_pred             cCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCC
Confidence            5666666666666666655555566666666666666666633333344555666666555

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.93  E-value=6.5e-25  Score=174.03  Aligned_cols=194  Identities=27%  Similarity=0.285  Sum_probs=154.2

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL   81 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i   81 (237)
                      |++++|.++..  +.+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus        46 L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  121 (272)
T 3rfs_A           46 IIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL  121 (272)
T ss_dssp             EECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             eeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcC
Confidence            67788887743  3477888899999999988853  3678888999999999988876666778888999999999988


Q ss_pred             cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCcc
Q 038699           82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPAS  161 (237)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  161 (237)
                      .+..+..+..+++|++|++++|.+++..+..+..+++|+.| ++++|.+++..+..+..+++|+.|++++|.+++..+..
T Consensus       122 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  200 (272)
T 3rfs_A          122 QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL-DLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGV  200 (272)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE-ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred             CccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEE-ECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHH
Confidence            86666667888899999999998886666677888889999 99999888777777788889999999999888777777


Q ss_pred             ccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCCcccccCC
Q 038699          162 LSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCGKVQ  207 (237)
Q Consensus       162 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~l~~~~~  207 (237)
                      +..+++|++|++++|++.+..|      .+..+.+..| .+.|.+|
T Consensus       201 ~~~l~~L~~L~l~~N~~~~~~~------~l~~l~~~~n-~~~g~ip  239 (272)
T 3rfs_A          201 FDRLTSLQYIWLHDNPWDCTCP------GIRYLSEWIN-KHSGVVR  239 (272)
T ss_dssp             TTTCTTCCEEECCSSCBCCCTT------TTHHHHHHHH-HTGGGBB
T ss_pred             HhCCcCCCEEEccCCCccccCc------HHHHHHHHHH-hCCCccc
Confidence            8888999999999998886555      3455565555 3555544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.93  E-value=2.6e-25  Score=188.19  Aligned_cols=110  Identities=21%  Similarity=0.224  Sum_probs=72.2

Q ss_pred             CEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCC
Q 038699           96 RILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSY  175 (237)
Q Consensus        96 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~  175 (237)
                      ++|++++|.+.+..+..+..+++|+.| ++++|.+.+..+..|..+++|+.|++++|.+++..+..+..+++|++|++++
T Consensus       278 ~~L~l~~n~l~~~~~~~~~~l~~L~~L-~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  356 (455)
T 3v47_A          278 KTCDLSKSKIFALLKSVFSHFTDLEQL-TLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY  356 (455)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEE-ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCS
T ss_pred             eEEEecCccccccchhhcccCCCCCEE-ECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCC
Confidence            333333333333345556666777777 7777777766666777777777777777777766667777777888888888


Q ss_pred             CcCcCCCCC-CCccCCCccchhccCCcccccCC
Q 038699          176 NNLEGPLPD-GSVFSSSQSSAFTNNKDLCGKVQ  207 (237)
Q Consensus       176 n~l~~~~~~-~~~~~~l~~~~l~~n~~l~~~~~  207 (237)
                      |++++..|. ...+++++.+++.+|. +.+.++
T Consensus       357 N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~  388 (455)
T 3v47_A          357 NHIRALGDQSFLGLPNLKELALDTNQ-LKSVPD  388 (455)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSC-CSCCCT
T ss_pred             CcccccChhhccccccccEEECCCCc-cccCCH
Confidence            877766553 3456777777777763 444433

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=3.5e-25  Score=186.94  Aligned_cols=194  Identities=23%  Similarity=0.248  Sum_probs=138.0

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL   81 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i   81 (237)
                      ++.++.+++ .+|..+.  ++++.|+|++|.+....+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+
T Consensus        48 v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l  124 (440)
T 3zyj_A           48 VICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL  124 (440)
T ss_dssp             EECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred             EEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence            455666776 4454443  6899999999999987888999999999999999999988888999999999999999999


Q ss_pred             cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCc-ccccccChhhcCCCCCCeEeCc----------
Q 038699           82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYN-SLTGEIPAQLGKLTRLQSLNLS----------  150 (237)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n-~~~~~~~~~~~~~~~L~~L~l~----------  150 (237)
                      +...+..+..+++|++|++++|.+....+..+..+++|+.| ++++| .+....+..|.++++|+.|+++          
T Consensus       125 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L-~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~  203 (440)
T 3zyj_A          125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRL-DLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNL  203 (440)
T ss_dssp             SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEE-ECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCC
T ss_pred             CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEe-CCCCCCCcceeCcchhhcccccCeecCCCCcCcccccc
Confidence            96666689999999999999999886655566666666666 66653 3333333345555555555554          


Q ss_pred             ------------CCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCC-CccCCCccchhccC
Q 038699          151 ------------HNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDG-SVFSSSQSSAFTNN  199 (237)
Q Consensus       151 ------------~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~l~~~~l~~n  199 (237)
                                  +|.+++..+..|..+++|++|++++|++++..+.. ..+++++.+++.+|
T Consensus       204 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  265 (440)
T 3zyj_A          204 TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN  265 (440)
T ss_dssp             TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS
T ss_pred             CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC
Confidence                        45444444455555555555555555555443322 33455666666666

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.93  E-value=5.3e-26  Score=198.94  Aligned_cols=203  Identities=26%  Similarity=0.198  Sum_probs=178.1

Q ss_pred             EEecCCcCCCC--CCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCc-ccccCCCCCCEEEccC
Q 038699            2 LGLAGNSIGGK--IPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIP-EEIGGLLNLDSLDLSM   78 (237)
Q Consensus         2 L~l~~n~~~~~--~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~   78 (237)
                      |++++|.+++.  .+..+..+++|++|++++|.+. ..+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++
T Consensus       355 L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~  433 (606)
T 3vq2_A          355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY  433 (606)
T ss_dssp             EECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTT
T ss_pred             EECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcC
Confidence            77888888766  3677888899999999999888 466788899999999999999987666 6788999999999999


Q ss_pred             CcCcCcccccccCCCCCCEEEccCCcccc-cCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCc
Q 038699           79 NRLSGPIPNQIGELRDLRILNLSQNNLIG-TIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGE  157 (237)
Q Consensus        79 n~i~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  157 (237)
                      |.+.+..+..+..+++|++|++++|.+.+ ..|..+..+++|+.| ++++|.+++..+..+..+++|+.|++++|.+++.
T Consensus       434 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L-~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  512 (606)
T 3vq2_A          434 TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL-DLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL  512 (606)
T ss_dssp             SCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE-ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCE
T ss_pred             CCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEE-ECCCCcCCccChhhhcccccCCEEECCCCcCCCc
Confidence            99998888889999999999999999987 478889999999999 9999999988889999999999999999999988


Q ss_pred             cCccccCCCCCCEEEcCCCcCcCCCCCCCccC-CCccchhccCCcccccC
Q 038699          158 IPASLSSMLSLVAVNLSYNNLEGPLPDGSVFS-SSQSSAFTNNKDLCGKV  206 (237)
Q Consensus       158 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-~l~~~~l~~n~~l~~~~  206 (237)
                      .|..+..+++|++|++++|+++...+....++ +++.+++.+|+..|...
T Consensus       513 ~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          513 DSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             EGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             CHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            89999999999999999999995444445555 59999999999998554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.93  E-value=3.9e-25  Score=183.82  Aligned_cols=105  Identities=22%  Similarity=0.180  Sum_probs=62.3

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL   81 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i   81 (237)
                      |++++|++++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|++++|.+
T Consensus        74 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l  153 (390)
T 3o6n_A           74 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL  153 (390)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCcc
Confidence            56666666655555666666666666666666655555566666666666666666633333345566666666666666


Q ss_pred             cCcccccccCCCCCCEEEccCCccc
Q 038699           82 SGPIPNQIGELRDLRILNLSQNNLI  106 (237)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~n~~~  106 (237)
                      .+..+..+..+++|++|++++|.++
T Consensus       154 ~~~~~~~~~~l~~L~~L~l~~n~l~  178 (390)
T 3o6n_A          154 ERIEDDTFQATTSLQNLQLSSNRLT  178 (390)
T ss_dssp             CBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred             CccChhhccCCCCCCEEECCCCcCC
Confidence            5444455555566666666555544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.93  E-value=4e-26  Score=187.39  Aligned_cols=204  Identities=21%  Similarity=0.196  Sum_probs=150.8

Q ss_pred             CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699            1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR   80 (237)
Q Consensus         1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   80 (237)
                      +|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus        56 ~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  135 (353)
T 2z80_A           56 SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP  135 (353)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCC
T ss_pred             EEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCC
Confidence            37888899887777788888999999999998887777778888899999999988885555558888888888888888


Q ss_pred             CcCccc-ccccCCCCCCEEEccCCc-ccccCCccccCccCccccccCcCcccccccChhhcCCCCCC-------------
Q 038699           81 LSGPIP-NQIGELRDLRILNLSQNN-LIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQ-------------  145 (237)
Q Consensus        81 i~~~~~-~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~-------------  145 (237)
                      +.+..+ ..+..+++|++|++++|. +....+..+..+++|+.| ++++|.+.+..+..+..+++|+             
T Consensus       136 l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~  214 (353)
T 2z80_A          136 YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL-EIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL  214 (353)
T ss_dssp             CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE-EEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHH
T ss_pred             CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE-ECCCCCcCccCHHHHhccccCCeecCCCCccccch
Confidence            884333 367788888888888873 555556667777777777 7777777766566555555444             


Q ss_pred             -----------eEeCcCCcCcCc-------------------------------cCccccCCCCCCEEEcCCCcCcCCCC
Q 038699          146 -----------SLNLSHNNLSGE-------------------------------IPASLSSMLSLVAVNLSYNNLEGPLP  183 (237)
Q Consensus       146 -----------~L~l~~n~l~~~-------------------------------~~~~~~~~~~L~~L~l~~n~l~~~~~  183 (237)
                                 .|++++|.+++.                               +|..+..+++|++|++++|+++...+
T Consensus       215 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~  294 (353)
T 2z80_A          215 EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD  294 (353)
T ss_dssp             HHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCT
T ss_pred             hhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCH
Confidence                       445555544431                               22345667889999999999984444


Q ss_pred             CC-CccCCCccchhccCCccccc
Q 038699          184 DG-SVFSSSQSSAFTNNKDLCGK  205 (237)
Q Consensus       184 ~~-~~~~~l~~~~l~~n~~l~~~  205 (237)
                      .. ..+++++.+++.+|+..|..
T Consensus       295 ~~~~~l~~L~~L~L~~N~~~~~~  317 (353)
T 2z80_A          295 GIFDRLTSLQKIWLHTNPWDCSC  317 (353)
T ss_dssp             TTTTTCTTCCEEECCSSCBCCCH
T ss_pred             HHHhcCCCCCEEEeeCCCccCcC
Confidence            33 56788899999999877754

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.93  E-value=1.7e-24  Score=176.24  Aligned_cols=202  Identities=26%  Similarity=0.275  Sum_probs=164.3

Q ss_pred             CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699            1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR   80 (237)
Q Consensus         1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   80 (237)
                      +|++++|++++..|..|..+++|++|++++|.++ .+|..+.  ++|++|++++|.+++..+..+..+++|+.|++++|.
T Consensus        82 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~  158 (332)
T 2ft3_A           82 ALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP  158 (332)
T ss_dssp             EEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC
T ss_pred             EEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc
Confidence            3789999999888999999999999999999998 4554443  789999999998886666678888889999888888


Q ss_pred             CcC--cccccccCC--------------------CCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhh
Q 038699           81 LSG--PIPNQIGEL--------------------RDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQL  138 (237)
Q Consensus        81 i~~--~~~~~~~~l--------------------~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~  138 (237)
                      ++.  ..+..+..+                    ++|++|++++|.+.+..+..+..+++|+.| ++++|.+++..+..+
T Consensus       159 l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L-~L~~N~l~~~~~~~~  237 (332)
T 2ft3_A          159 LENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRL-GLGHNQIRMIENGSL  237 (332)
T ss_dssp             CBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCC-BCCSSCCCCCCTTGG
T ss_pred             cccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEE-ECCCCcCCcCChhHh
Confidence            752  333333322                    467788888888887777889999999999 999999998888889


Q ss_pred             cCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCCC-------ccCCCccchhccCCcccccCC
Q 038699          139 GKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGS-------VFSSSQSSAFTNNKDLCGKVQ  207 (237)
Q Consensus       139 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-------~~~~l~~~~l~~n~~l~~~~~  207 (237)
                      ..+++|+.|++++|.++ .+|..+..+++|++|++++|++++..+...       .+..+..+++.+|+..+..++
T Consensus       238 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~  312 (332)
T 2ft3_A          238 SFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQ  312 (332)
T ss_dssp             GGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSC
T ss_pred             hCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccC
Confidence            99999999999999999 788889999999999999999996554432       145678899999987754443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.93  E-value=3.1e-25  Score=194.08  Aligned_cols=202  Identities=23%  Similarity=0.233  Sum_probs=136.2

Q ss_pred             EEecCCcCCCCC--CcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcc-cccCCCCCCEEEccC
Q 038699            2 LGLAGNSIGGKI--PAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPE-EIGGLLNLDSLDLSM   78 (237)
Q Consensus         2 L~l~~n~~~~~~--~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~   78 (237)
                      |++++|.+++..  +..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+. .+..+++|++|++++
T Consensus       355 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~  434 (606)
T 3t6q_A          355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH  434 (606)
T ss_dssp             EECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTT
T ss_pred             EECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCC
Confidence            445555555443  44455555555555555555544555555566666666666665544332 255666666666666


Q ss_pred             CcCcCcccccccCCCCCCEEEccCCccccc---CCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCc
Q 038699           79 NRLSGPIPNQIGELRDLRILNLSQNNLIGT---IPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLS  155 (237)
Q Consensus        79 n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~---~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  155 (237)
                      |.+.+..+..+..+++|++|++++|.+.+.   .+..+..+++|+.| ++++|.+++..+..|..+++|+.|++++|.++
T Consensus       435 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L-~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  513 (606)
T 3t6q_A          435 SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEIL-VLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT  513 (606)
T ss_dssp             CCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEE-ECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             CccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEE-ECCCCccCccChhhhccccCCCEEECCCCccC
Confidence            666655566666777777777777776542   22456777777777 77888777777777788888888888888888


Q ss_pred             CccCccccCCCCCCEEEcCCCcCcCCCCCC-CccCCCccchhccCCccccc
Q 038699          156 GEIPASLSSMLSLVAVNLSYNNLEGPLPDG-SVFSSSQSSAFTNNKDLCGK  205 (237)
Q Consensus       156 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~l~~~~l~~n~~l~~~  205 (237)
                      +..|..+..++.| +|++++|++++.+|.. ..++.++.+++.+|+..|..
T Consensus       514 ~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  563 (606)
T 3t6q_A          514 SSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC  563 (606)
T ss_dssp             GGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred             cCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccC
Confidence            7777788888888 8888888888666653 45677889999999988754

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=6.4e-26  Score=183.23  Aligned_cols=192  Identities=26%  Similarity=0.319  Sum_probs=96.6

Q ss_pred             EEecCCcCCCCCCccc--CCCCCCcEEEccCCcCCCccCccccCC-----CCCCEEeccCCcccccCcccccCCCCCCEE
Q 038699            2 LGLAGNSIGGKIPAEI--GSLSQLVELHLSSNQLSGEIPAHIGNL-----TELSTLSLNGNNISGQIPEEIGGLLNLDSL   74 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~--~~l~~L~~L~L~~n~i~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   74 (237)
                      |++++|++++..|..+  ..+++|++|++++|.+++. |..+..+     ++|++|++++|.+++..+..+..+++|++|
T Consensus       100 L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  178 (312)
T 1wwl_A          100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTL  178 (312)
T ss_dssp             EEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEE
T ss_pred             EEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEE
Confidence            4555555555555443  5555555555555555543 4444443     555555555555554444555555555555


Q ss_pred             EccCCcCcCc--ccccc--cCCCCCCEEEccCCcccc---cCCccccCccCccccccCcCcccccccC-hhhcCCCCCCe
Q 038699           75 DLSMNRLSGP--IPNQI--GELRDLRILNLSQNNLIG---TIPFQIGNLVGLQDLQDLSYNSLTGEIP-AQLGKLTRLQS  146 (237)
Q Consensus        75 ~l~~n~i~~~--~~~~~--~~l~~L~~L~l~~n~~~~---~~~~~~~~l~~L~~L~~l~~n~~~~~~~-~~~~~~~~L~~  146 (237)
                      ++++|.+.+.  .+..+  ..+++|++|++++|.+.+   .....+..+++|+.| ++++|.+++..+ ..+..+++|+.
T Consensus       179 ~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L-~Ls~N~l~~~~~~~~~~~l~~L~~  257 (312)
T 1wwl_A          179 DLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL-DLSHNSLRDAAGAPSCDWPSQLNS  257 (312)
T ss_dssp             ECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEE-ECTTSCCCSSCCCSCCCCCTTCCE
T ss_pred             ECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEE-ECCCCcCCcccchhhhhhcCCCCE
Confidence            5555554322  12222  455555555555555541   111222344555555 555555554332 23334455555


Q ss_pred             EeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccC
Q 038699          147 LNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNN  199 (237)
Q Consensus       147 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n  199 (237)
                      |++++|.++ .+|..+.  ++|++|++++|++++. |....++.++.+++.+|
T Consensus       258 L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N  306 (312)
T 1wwl_A          258 LNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGN  306 (312)
T ss_dssp             EECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTC
T ss_pred             EECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCC
Confidence            555555555 3444333  4555555555555543 33444555555555555

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.93  E-value=3.1e-25  Score=188.96  Aligned_cols=178  Identities=28%  Similarity=0.297  Sum_probs=149.5

Q ss_pred             CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699            1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR   80 (237)
Q Consensus         1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   80 (237)
                      +|||++|++++..+..|..+++|++|+|++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|++++|.
T Consensus        36 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  115 (477)
T 2id5_A           36 LLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK  115 (477)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSC
T ss_pred             EEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCc
Confidence            37899999998888889999999999999999997778889999999999999999986666678889999999999999


Q ss_pred             CcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCc
Q 038699           81 LSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPA  160 (237)
Q Consensus        81 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  160 (237)
                      +.+..+..+..+++|++|++++|.+.+..+..+..+++|+.| ++++|.++...+..+..+++|+.|++++|.+.+..+.
T Consensus       116 i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~  194 (477)
T 2id5_A          116 IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQL-TLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY  194 (477)
T ss_dssp             CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEE-EEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTT
T ss_pred             cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEE-ECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChh
Confidence            987777888899999999999999887777888888999999 9999988866666788888888888888888766666


Q ss_pred             cccCCCCCCEEEcCCCcCc
Q 038699          161 SLSSMLSLVAVNLSYNNLE  179 (237)
Q Consensus       161 ~~~~~~~L~~L~l~~n~l~  179 (237)
                      .+..+++|++|++++|...
T Consensus       195 ~~~~l~~L~~L~l~~~~~~  213 (477)
T 2id5_A          195 SFKRLYRLKVLEISHWPYL  213 (477)
T ss_dssp             CSCSCTTCCEEEEECCTTC
T ss_pred             hcccCcccceeeCCCCccc
Confidence            6666666666666665443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.93  E-value=3.2e-24  Score=174.44  Aligned_cols=202  Identities=23%  Similarity=0.280  Sum_probs=166.8

Q ss_pred             CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCc---------------------cCccccCCCCCCEEeccCCcccc
Q 038699            1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGE---------------------IPAHIGNLTELSTLSLNGNNISG   59 (237)
Q Consensus         1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~---------------------~~~~~~~l~~L~~L~l~~n~l~~   59 (237)
                      +|++++|++++..|..|..+++|++|++++|.++..                     .+..|..+++|++|++++|.++.
T Consensus        80 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  159 (330)
T 1xku_A           80 TLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS  159 (330)
T ss_dssp             EEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG
T ss_pred             EEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc
Confidence            378888999888888888888888888888877622                     22335677888888888887753


Q ss_pred             --cCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChh
Q 038699           60 --QIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQ  137 (237)
Q Consensus        60 --~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~  137 (237)
                        ..+..+..+++|++|++++|.++ .+|..+  .++|++|++++|.+.+..+..+..+++|+.| ++++|.+++..+..
T Consensus       160 ~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~Ls~n~l~~~~~~~  235 (330)
T 1xku_A          160 SGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKL-GLSFNSISAVDNGS  235 (330)
T ss_dssp             GGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEE-ECCSSCCCEECTTT
T ss_pred             cCcChhhccCCCCcCEEECCCCccc-cCCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEE-ECCCCcCceeChhh
Confidence              56678889999999999999998 455444  3899999999999998888899999999999 99999999888888


Q ss_pred             hcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCCC-------ccCCCccchhccCCcccccCC
Q 038699          138 LGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGS-------VFSSSQSSAFTNNKDLCGKVQ  207 (237)
Q Consensus       138 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-------~~~~l~~~~l~~n~~l~~~~~  207 (237)
                      +..+++|+.|++++|.++ .+|..+..+++|++|++++|++++..+...       ....+..+++.+|+..+..++
T Consensus       236 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~  311 (330)
T 1xku_A          236 LANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ  311 (330)
T ss_dssp             GGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSC
T ss_pred             ccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccC
Confidence            999999999999999999 788889999999999999999996554432       235677889999987765443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=2.3e-25  Score=190.29  Aligned_cols=200  Identities=22%  Similarity=0.225  Sum_probs=156.5

Q ss_pred             CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcc----------------c
Q 038699            1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPE----------------E   64 (237)
Q Consensus         1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------------~   64 (237)
                      +|+|++|.+++..|..|..+++|+.|+|++|.+++..+  |..+++|++|++++|.+++..+.                .
T Consensus        38 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~  115 (487)
T 3oja_A           38 ELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVS  115 (487)
T ss_dssp             EEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEE
T ss_pred             EEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCC
Confidence            38999999999888999999999999999999986554  88999999999999988743211                1


Q ss_pred             ccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCcccc-CccCccccccCcCcccccccChhhcCCCC
Q 038699           65 IGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIG-NLVGLQDLQDLSYNSLTGEIPAQLGKLTR  143 (237)
Q Consensus        65 ~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~~l~~n~~~~~~~~~~~~~~~  143 (237)
                      ...+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..|..+. .+++|+.| ++++|.+++..+  ...+++
T Consensus       116 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L-~Ls~N~l~~~~~--~~~l~~  192 (487)
T 3oja_A          116 CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL-NLQYNFIYDVKG--QVVFAK  192 (487)
T ss_dssp             ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE-ECTTSCCCEEEC--CCCCTT
T ss_pred             ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEE-ecCCCccccccc--cccCCC
Confidence            12356677777777777766666777788888888888888776666665 67888888 888888875533  235788


Q ss_pred             CCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCCcccccC
Q 038699          144 LQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCGKV  206 (237)
Q Consensus       144 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~l~~~~  206 (237)
                      |+.|++++|.+++ .|..+..+++|+.|++++|.+++.++....++.+..+++.+|+..|+.+
T Consensus       193 L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~  254 (487)
T 3oja_A          193 LKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTL  254 (487)
T ss_dssp             CCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHH
T ss_pred             CCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcch
Confidence            8889999988884 4555888899999999999998755555667888899999998887654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.92  E-value=4.7e-25  Score=187.80  Aligned_cols=203  Identities=23%  Similarity=0.231  Sum_probs=159.9

Q ss_pred             CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699            1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR   80 (237)
Q Consensus         1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   80 (237)
                      +|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.
T Consensus       108 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  187 (477)
T 2id5_A          108 KLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN  187 (477)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC
T ss_pred             EEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc
Confidence            37888898888888888888889999998888887777788888888888888888886655667777888888888777


Q ss_pred             CcCcccccccCCCCCCE------------------------EEccCCcccccCCccccCccCccccccCcCcccccccCh
Q 038699           81 LSGPIPNQIGELRDLRI------------------------LNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPA  136 (237)
Q Consensus        81 i~~~~~~~~~~l~~L~~------------------------L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~  136 (237)
                      +.+..+..+..+++|++                        |++++|.++...+..+..+++|+.| ++++|.+++..+.
T Consensus       188 i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~Ls~n~l~~~~~~  266 (477)
T 2id5_A          188 INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFL-NLSYNPISTIEGS  266 (477)
T ss_dssp             CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEE-ECCSSCCCEECTT
T ss_pred             CcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCee-ECCCCcCCccChh
Confidence            76554445555555544                        4445555553333467788889999 9999998877778


Q ss_pred             hhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCC-CccCCCccchhccCCcccc
Q 038699          137 QLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDG-SVFSSSQSSAFTNNKDLCG  204 (237)
Q Consensus       137 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~l~~~~l~~n~~l~~  204 (237)
                      .|..+++|+.|++++|.+++..+..|..+++|++|++++|++++..+.. ..+++++.+++.+|+..|.
T Consensus       267 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~  335 (477)
T 2id5_A          267 MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD  335 (477)
T ss_dssp             SCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred             hccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence            8888999999999999998877888999999999999999999655543 4567889999999988775

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.92  E-value=8.2e-25  Score=181.84  Aligned_cols=198  Identities=22%  Similarity=0.147  Sum_probs=158.5

Q ss_pred             CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699            1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR   80 (237)
Q Consensus         1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   80 (237)
                      +|+++++.++...+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus        49 ~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  128 (390)
T 3o6n_A           49 IVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND  128 (390)
T ss_dssp             EEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCc
Confidence            37899999987777778899999999999999997777789999999999999999998778889999999999999999


Q ss_pred             CcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccCh------------------------
Q 038699           81 LSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPA------------------------  136 (237)
Q Consensus        81 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~------------------------  136 (237)
                      +....+..+..+++|++|++++|.+.+..+..+..+++|+.| ++++|.++.....                        
T Consensus       129 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L  207 (390)
T 3o6n_A          129 LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL-QLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAV  207 (390)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEE-ECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSC
T ss_pred             cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEE-ECCCCcCCccccccccccceeecccccccccCCCCcc
Confidence            995544557899999999999999998778889999999999 9988887643211                        


Q ss_pred             -----------------------------------hhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCC
Q 038699          137 -----------------------------------QLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGP  181 (237)
Q Consensus       137 -----------------------------------~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~  181 (237)
                                                         .+..+++|+.|++++|.+++..|..+..+++|++|++++|++++.
T Consensus       208 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  287 (390)
T 3o6n_A          208 EELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL  287 (390)
T ss_dssp             SEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE
T ss_pred             eEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc
Confidence                                               234456677777777777666666777777777777777777654


Q ss_pred             CCCCCccCCCccchhccC
Q 038699          182 LPDGSVFSSSQSSAFTNN  199 (237)
Q Consensus       182 ~~~~~~~~~l~~~~l~~n  199 (237)
                      ......++.++.+++.+|
T Consensus       288 ~~~~~~l~~L~~L~L~~n  305 (390)
T 3o6n_A          288 NLYGQPIPTLKVLDLSHN  305 (390)
T ss_dssp             ECSSSCCTTCCEEECCSS
T ss_pred             CcccCCCCCCCEEECCCC
Confidence            444445666777777666

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=9.1e-25  Score=190.98  Aligned_cols=105  Identities=22%  Similarity=0.180  Sum_probs=60.7

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL   81 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i   81 (237)
                      |+|++|.+++..+..|..+++|+.|+|++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+
T Consensus        80 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l  159 (597)
T 3oja_B           80 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL  159 (597)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcC
Confidence            55666666655555566666666666666666655555555666666666666666533333445566666666666665


Q ss_pred             cCcccccccCCCCCCEEEccCCccc
Q 038699           82 SGPIPNQIGELRDLRILNLSQNNLI  106 (237)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~n~~~  106 (237)
                      .+..+..+..+++|++|++++|.+.
T Consensus       160 ~~~~~~~~~~l~~L~~L~L~~N~l~  184 (597)
T 3oja_B          160 ERIEDDTFQATTSLQNLQLSSNRLT  184 (597)
T ss_dssp             CBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             CCCChhhhhcCCcCcEEECcCCCCC
Confidence            5544445555555555555555443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.92  E-value=1.9e-24  Score=189.05  Aligned_cols=154  Identities=19%  Similarity=0.120  Sum_probs=122.1

Q ss_pred             CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699            1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR   80 (237)
Q Consensus         1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   80 (237)
                      +||+++|.+++..|..|.++++|++|++++|.+.+..|.+|..+++|++|++++|.+++..|..+..+++|++|++++|.
T Consensus        37 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  116 (606)
T 3t6q_A           37 CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG  116 (606)
T ss_dssp             EEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSC
T ss_pred             EEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccC
Confidence            37899999998888889999999999999999987778889999999999999999987778888899999999999998


Q ss_pred             CcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCC--eEeCcCCcCc
Q 038699           81 LSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQ--SLNLSHNNLS  155 (237)
Q Consensus        81 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~--~L~l~~n~l~  155 (237)
                      +.+..+..+..+++|++|++++|.+.+.....+..+++|+.| ++++|.+++..+..+..+++|+  .|++++|.++
T Consensus       117 i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L-~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~  192 (606)
T 3t6q_A          117 ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVL-DFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA  192 (606)
T ss_dssp             CSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEE-ECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred             cccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEE-EcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence            886656778888888888888888876443344447777777 7777777655555566666555  5555555443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.92  E-value=1e-24  Score=193.15  Aligned_cols=204  Identities=24%  Similarity=0.240  Sum_probs=146.5

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccC-ccccCCCCCCEEeccCCccccc--------------------
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIP-AHIGNLTELSTLSLNGNNISGQ--------------------   60 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~--------------------   60 (237)
                      |++++|++++..|.+|..+++|+.|++++|.+.+.++ ..|..+++|++|++++|.+++.                    
T Consensus       386 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~  465 (680)
T 1ziw_A          386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA  465 (680)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSC
T ss_pred             EECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccc
Confidence            6777888877777777777888888888877765443 5566677777777777665433                    


Q ss_pred             ------CcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCC--------ccccCccCccccccCc
Q 038699           61 ------IPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIP--------FQIGNLVGLQDLQDLS  126 (237)
Q Consensus        61 ------~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~--------~~~~~l~~L~~L~~l~  126 (237)
                            .|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+        ..+..+++|+.| +++
T Consensus       466 l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L-~L~  544 (680)
T 1ziw_A          466 LKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL-NLE  544 (680)
T ss_dssp             CBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEE-ECC
T ss_pred             ccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEE-ECC
Confidence                  44556666677777777777765555566777777777777777664311        235667777777 788


Q ss_pred             CcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCCC--ccCCCccchhccCCcccc
Q 038699          127 YNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGS--VFSSSQSSAFTNNKDLCG  204 (237)
Q Consensus       127 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~~~~l~~~~l~~n~~l~~  204 (237)
                      +|.++...+..|.++++|+.|++++|.++...+..|..+++|++|++++|++++..+...  .++++..+++.+|++.|.
T Consensus       545 ~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~  624 (680)
T 1ziw_A          545 SNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT  624 (680)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred             CCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence            887775555567888888888888888886666667788888888888888886665432  478899999999999997


Q ss_pred             cC
Q 038699          205 KV  206 (237)
Q Consensus       205 ~~  206 (237)
                      ..
T Consensus       625 c~  626 (680)
T 1ziw_A          625 CE  626 (680)
T ss_dssp             CC
T ss_pred             Cc
Confidence            64

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.92  E-value=2.8e-25  Score=182.35  Aligned_cols=174  Identities=24%  Similarity=0.236  Sum_probs=148.1

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL   81 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i   81 (237)
                      .|.++++++.+ |..+.  ++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+
T Consensus        36 c~~~~~~l~~i-P~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  112 (353)
T 2z80_A           36 CKGSSGSLNSI-PSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL  112 (353)
T ss_dssp             EECCSTTCSSC-CTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             eeCCCCCcccc-ccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC
Confidence            57788888854 54443  5899999999999976666899999999999999999987788899999999999999999


Q ss_pred             cCcccccccCCCCCCEEEccCCcccccCC-ccccCccCccccccCcCc-ccccccChhhcCCCCCCeEeCcCCcCcCccC
Q 038699           82 SGPIPNQIGELRDLRILNLSQNNLIGTIP-FQIGNLVGLQDLQDLSYN-SLTGEIPAQLGKLTRLQSLNLSHNNLSGEIP  159 (237)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~~l~~n-~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  159 (237)
                      ++..+..+..+++|++|++++|.+....+ ..+..+++|+.| ++++| .+....+..+..+++|+.|++++|.+++..|
T Consensus       113 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L-~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  191 (353)
T 2z80_A          113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQIL-RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP  191 (353)
T ss_dssp             SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEE-EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred             CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEE-ECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH
Confidence            96555568999999999999999985444 478999999999 99999 4776777889999999999999999997778


Q ss_pred             ccccCCCCCCEEEcCCCcCc
Q 038699          160 ASLSSMLSLVAVNLSYNNLE  179 (237)
Q Consensus       160 ~~~~~~~~L~~L~l~~n~l~  179 (237)
                      ..+..+++|++|++++|++.
T Consensus       192 ~~l~~l~~L~~L~l~~n~l~  211 (353)
T 2z80_A          192 KSLKSIQNVSHLILHMKQHI  211 (353)
T ss_dssp             TTTTTCSEEEEEEEECSCST
T ss_pred             HHHhccccCCeecCCCCccc
Confidence            88887777777777777664

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.92  E-value=3.4e-24  Score=171.39  Aligned_cols=176  Identities=28%  Similarity=0.250  Sum_probs=159.7

Q ss_pred             CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699            1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR   80 (237)
Q Consensus         1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   80 (237)
                      +|++++|.+++..+..|..+++|++|++++|.+++..+  ...+++|++|++++|.++ .+|..+..+++|++|++++|.
T Consensus        35 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~  111 (290)
T 1p9a_G           35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNR  111 (290)
T ss_dssp             EEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSC
T ss_pred             EEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCc
Confidence            38999999999888999999999999999999995433  378999999999999998 778888999999999999999


Q ss_pred             CcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCc
Q 038699           81 LSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPA  160 (237)
Q Consensus        81 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  160 (237)
                      +++..+..|..+++|++|++++|.+....+..+..+++|+.| ++++|+++...+..|..+++|+.|++++|.++ .+|.
T Consensus       112 l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L-~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~  189 (290)
T 1p9a_G          112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL-SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK  189 (290)
T ss_dssp             CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE-ECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred             CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEE-ECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccCh
Confidence            997767889999999999999999997777788999999999 99999999777778889999999999999999 6787


Q ss_pred             cccCCCCCCEEEcCCCcCcCC
Q 038699          161 SLSSMLSLVAVNLSYNNLEGP  181 (237)
Q Consensus       161 ~~~~~~~L~~L~l~~n~l~~~  181 (237)
                      .+...++|+.+++++|++.+.
T Consensus       190 ~~~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          190 GFFGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             TTTTTCCCSEEECCSCCBCCS
T ss_pred             hhcccccCCeEEeCCCCccCc
Confidence            888889999999999998753

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=1.4e-24  Score=189.76  Aligned_cols=199  Identities=22%  Similarity=0.150  Sum_probs=164.1

Q ss_pred             CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699            1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR   80 (237)
Q Consensus         1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   80 (237)
                      ++++++|.++...+..|..+++|+.|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.
T Consensus        55 ~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  134 (597)
T 3oja_B           55 IVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND  134 (597)
T ss_dssp             EEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCC
Confidence            37889999988777778999999999999999998778899999999999999999998888889999999999999999


Q ss_pred             CcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccC-------------------------
Q 038699           81 LSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIP-------------------------  135 (237)
Q Consensus        81 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~-------------------------  135 (237)
                      +.+..+..|..+++|++|++++|.+.+..|..+..+++|+.| ++++|.+++...                         
T Consensus       135 l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L-~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L  213 (597)
T 3oja_B          135 LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL-QLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAV  213 (597)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE-ECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTC
T ss_pred             CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEE-ECcCCCCCCcChhhhhhhhhhhcccCccccccCCchh
Confidence            996655667999999999999999998888889999999999 999888764321                         


Q ss_pred             ----------------------------------hhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCC
Q 038699          136 ----------------------------------AQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGP  181 (237)
Q Consensus       136 ----------------------------------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~  181 (237)
                                                        ..+..+++|+.|++++|.+++..|..+..+++|++|++++|.+++.
T Consensus       214 ~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l  293 (597)
T 3oja_B          214 EELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL  293 (597)
T ss_dssp             SEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE
T ss_pred             heeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC
Confidence                                              2245566777777777777766677777777788888888777765


Q ss_pred             CCCCCccCCCccchhccCC
Q 038699          182 LPDGSVFSSSQSSAFTNNK  200 (237)
Q Consensus       182 ~~~~~~~~~l~~~~l~~n~  200 (237)
                      .+....++.+..+++.+|.
T Consensus       294 ~~~~~~l~~L~~L~Ls~N~  312 (597)
T 3oja_B          294 NLYGQPIPTLKVLDLSHNH  312 (597)
T ss_dssp             ECSSSCCTTCCEEECCSSC
T ss_pred             CcccccCCCCcEEECCCCC
Confidence            4444456777777777764

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=2.3e-24  Score=171.13  Aligned_cols=183  Identities=25%  Similarity=0.273  Sum_probs=161.9

Q ss_pred             CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699            1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR   80 (237)
Q Consensus         1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   80 (237)
                      +|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus        56 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  135 (276)
T 2z62_A           56 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL  135 (276)
T ss_dssp             EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC
T ss_pred             EEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc
Confidence            48999999998888899999999999999999997777889999999999999999997666679999999999999999


Q ss_pred             CcCc-ccccccCCCCCCEEEccCCcccccCCccccCccCcc----ccccCcCcccccccChhhcCCCCCCeEeCcCCcCc
Q 038699           81 LSGP-IPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQ----DLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLS  155 (237)
Q Consensus        81 i~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~----~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  155 (237)
                      +.+. +|..+..+++|++|++++|.+++..+..+..+.+++    .+ ++++|.+....+..+. ..+|+.|++++|.++
T Consensus       136 l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L-~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~  213 (276)
T 2z62_A          136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL-DLSLNPMNFIQPGAFK-EIRLKELALDTNQLK  213 (276)
T ss_dssp             CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEE-ECCSSCCCEECTTSSC-SCCEEEEECCSSCCS
T ss_pred             cceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceee-ecCCCcccccCccccC-CCcccEEECCCCcee
Confidence            9853 588899999999999999999877777788787777    78 9999999966666554 458999999999999


Q ss_pred             CccCccccCCCCCCEEEcCCCcCcCCCCCC
Q 038699          156 GEIPASLSSMLSLVAVNLSYNNLEGPLPDG  185 (237)
Q Consensus       156 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  185 (237)
                      +..+..+..+++|++|++++|++++..+..
T Consensus       214 ~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l  243 (276)
T 2z62_A          214 SVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  243 (276)
T ss_dssp             CCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred             ecCHhHhcccccccEEEccCCcccccCCch
Confidence            776777889999999999999999776654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.92  E-value=5.3e-24  Score=168.75  Aligned_cols=196  Identities=23%  Similarity=0.245  Sum_probs=168.0

Q ss_pred             ecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcC
Q 038699            4 LAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSG   83 (237)
Q Consensus         4 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~   83 (237)
                      +..+.+...  ..+..+++|+.|++.+|.+.. .+ .+..+++|++|++++|.+++ + ..+..+++|++|++++|.+++
T Consensus        26 l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~   99 (272)
T 3rfs_A           26 LKKKSVTDA--VTQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQS   99 (272)
T ss_dssp             HTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCC
T ss_pred             hcCcccccc--cccccccceeeeeeCCCCccc-cc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCc
Confidence            334444433  234567899999999999883 33 47889999999999999985 3 478899999999999999997


Q ss_pred             cccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCcccc
Q 038699           84 PIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLS  163 (237)
Q Consensus        84 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  163 (237)
                      ..+..+..+++|++|++++|.+.+..+..+..+++|+.| ++++|.+++..+..+..+++|+.|++++|.+++..+..+.
T Consensus       100 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L-~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  178 (272)
T 3rfs_A          100 LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL-NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFD  178 (272)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE-ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             cChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEE-ECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhc
Confidence            777778999999999999999997777778999999999 9999999977777889999999999999999977777789


Q ss_pred             CCCCCCEEEcCCCcCcCCCCCC-CccCCCccchhccCCcccccC
Q 038699          164 SMLSLVAVNLSYNNLEGPLPDG-SVFSSSQSSAFTNNKDLCGKV  206 (237)
Q Consensus       164 ~~~~L~~L~l~~n~l~~~~~~~-~~~~~l~~~~l~~n~~l~~~~  206 (237)
                      .+++|++|++++|++++..+.. ..++.++.+++.+|+..|..+
T Consensus       179 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          179 KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  222 (272)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence            9999999999999999877754 568899999999998776543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=6.6e-25  Score=177.67  Aligned_cols=199  Identities=22%  Similarity=0.226  Sum_probs=147.1

Q ss_pred             CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcc----------------c
Q 038699            1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPE----------------E   64 (237)
Q Consensus         1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------------~   64 (237)
                      +|++++|.+++..|..|..+++|++|++++|.+++..+  +..+++|++|++++|.+++..+.                .
T Consensus        38 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~  115 (317)
T 3o53_A           38 ELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVS  115 (317)
T ss_dssp             EEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEE
T ss_pred             EEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcC
Confidence            38999999998888889999999999999999985544  88899999999999988742110                0


Q ss_pred             ccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCccc-cCccCccccccCcCcccccccChhhcCCCC
Q 038699           65 IGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQI-GNLVGLQDLQDLSYNSLTGEIPAQLGKLTR  143 (237)
Q Consensus        65 ~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~  143 (237)
                      ...+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+ ..+++|+.| ++++|.+++...  ...+++
T Consensus       116 ~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L-~L~~N~l~~~~~--~~~l~~  192 (317)
T 3o53_A          116 CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL-NLQYNFIYDVKG--QVVFAK  192 (317)
T ss_dssp             ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE-ECTTSCCCEEEC--CCCCTT
T ss_pred             ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEE-ECCCCcCccccc--cccccc
Confidence            1234566777777777765555567777778888888887776555554 356778888 888887774422  224778


Q ss_pred             CCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCCccccc
Q 038699          144 LQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCGK  205 (237)
Q Consensus       144 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~l~~~  205 (237)
                      |+.|++++|.++ ..+..+..+++|++|++++|++++..+....++.++.+++.+|+..|+.
T Consensus       193 L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~  253 (317)
T 3o53_A          193 LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT  253 (317)
T ss_dssp             CCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHH
T ss_pred             CCEEECCCCcCC-cchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcC
Confidence            888888888887 4455577888888888888888855555556778888888888877654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.92  E-value=1.6e-23  Score=164.15  Aligned_cols=180  Identities=22%  Similarity=0.276  Sum_probs=160.4

Q ss_pred             CCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEc
Q 038699           21 SQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNL  100 (237)
Q Consensus        21 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l  100 (237)
                      ...++++++++.++ .+|..+.  ++++.|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            35788999999999 5665554  68999999999999888888999999999999999999877788999999999999


Q ss_pred             cCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcC
Q 038699          101 SQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEG  180 (237)
Q Consensus       101 ~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  180 (237)
                      ++|.+....+..+..+++|+.| ++++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|++|++++|++++
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L-~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  169 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKL-YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS  169 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEE-ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCcccccChhHhcccCCCCEE-EcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence            9999997777889999999999 999999997777778999999999999999997777789999999999999999997


Q ss_pred             CCCC-CCccCCCccchhccCCcccc
Q 038699          181 PLPD-GSVFSSSQSSAFTNNKDLCG  204 (237)
Q Consensus       181 ~~~~-~~~~~~l~~~~l~~n~~l~~  204 (237)
                      ..+. ...++.++.+++.+|+.-|.
T Consensus       170 ~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          170 VPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             cCHHHHhCCCCCCEEEeeCCceeCC
Confidence            6663 45678899999999988775

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.91  E-value=4.2e-25  Score=194.36  Aligned_cols=140  Identities=22%  Similarity=0.412  Sum_probs=79.9

Q ss_pred             cCccccCCCCCCEEeccCCccccc-----------------Cccccc--CCCCCCEEEccCCcCcCcccccccCCCCCCE
Q 038699           37 IPAHIGNLTELSTLSLNGNNISGQ-----------------IPEEIG--GLLNLDSLDLSMNRLSGPIPNQIGELRDLRI   97 (237)
Q Consensus        37 ~~~~~~~l~~L~~L~l~~n~l~~~-----------------~~~~~~--~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~   97 (237)
                      +|..+..+++|++|++++|.+++.                 +|..+.  .+++|++|++++|.+.+.+|..+..+++|++
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  277 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL  277 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence            455566666666666666666643                 566655  6666666666666666666666666666666


Q ss_pred             EEccCCc-ccc-cCCccccCc------cCccccccCcCcccccccCh--hhcCCCCCCeEeCcCCcCcCccCccccCCCC
Q 038699           98 LNLSQNN-LIG-TIPFQIGNL------VGLQDLQDLSYNSLTGEIPA--QLGKLTRLQSLNLSHNNLSGEIPASLSSMLS  167 (237)
Q Consensus        98 L~l~~n~-~~~-~~~~~~~~l------~~L~~L~~l~~n~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  167 (237)
                      |++++|. +++ ..|..++.+      ++|+.| ++++|.++ ..|.  .+..+++|+.|++++|.+++.+| .+..+++
T Consensus       278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L-~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~  354 (636)
T 4eco_A          278 INVACNRGISGEQLKDDWQALADAPVGEKIQII-YIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIK  354 (636)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEE-ECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEE
T ss_pred             EECcCCCCCccccchHHHHhhhccccCCCCCEE-ECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCC
Confidence            6666665 554 445444443      555555 55555555 4444  55555555555555555554444 4444444


Q ss_pred             CCEEEcCCCcCc
Q 038699          168 LVAVNLSYNNLE  179 (237)
Q Consensus       168 L~~L~l~~n~l~  179 (237)
                      |++|++++|+++
T Consensus       355 L~~L~L~~N~l~  366 (636)
T 4eco_A          355 LASLNLAYNQIT  366 (636)
T ss_dssp             ESEEECCSSEEE
T ss_pred             CCEEECCCCccc
Confidence            444444444444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.91  E-value=3e-23  Score=183.75  Aligned_cols=198  Identities=28%  Similarity=0.279  Sum_probs=138.3

Q ss_pred             CEEecCCcCC--CCCCcccCCC--CCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCc-ccccCCCCCCEEE
Q 038699            1 MLGLAGNSIG--GKIPAEIGSL--SQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIP-EEIGGLLNLDSLD   75 (237)
Q Consensus         1 ~L~l~~n~~~--~~~~~~~~~l--~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~   75 (237)
                      +|++++|.+.  ......|..+  ++|+.|++++|.+.+..+.+|..+++|+.|++++|.+++.++ ..+..+++|++|+
T Consensus       357 ~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~  436 (680)
T 1ziw_A          357 YLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIY  436 (680)
T ss_dssp             EEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEE
T ss_pred             EEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEe
Confidence            3788888754  2233334433  689999999999998888999999999999999999986555 6788889999999


Q ss_pred             ccCCcCcCcc--------------------------cccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcc
Q 038699           76 LSMNRLSGPI--------------------------PNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNS  129 (237)
Q Consensus        76 l~~n~i~~~~--------------------------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~  129 (237)
                      +++|.+.+..                          |..+..+++|++|++++|.+++..+..+..+++|+.| ++++|.
T Consensus       437 Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L-~Ls~N~  515 (680)
T 1ziw_A          437 LSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEIL-DLQHNN  515 (680)
T ss_dssp             CCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE-ECCSSC
T ss_pred             cCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEE-eCCCCC
Confidence            9888765433                          3445555666666666666665555556666666666 666666


Q ss_pred             cccccC--------hhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCC-CccCCCccchhccC
Q 038699          130 LTGEIP--------AQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDG-SVFSSSQSSAFTNN  199 (237)
Q Consensus       130 ~~~~~~--------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~l~~~~l~~n  199 (237)
                      +++...        ..+.++++|+.|++++|.++...+..|..+++|++|++++|++++..+.. ..++.++.+++.+|
T Consensus       516 l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N  594 (680)
T 1ziw_A          516 LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN  594 (680)
T ss_dssp             CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             ccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCC
Confidence            654322        12556667777777777776444456777777777777777777544443 34567777777776

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.91  E-value=3.3e-24  Score=173.05  Aligned_cols=193  Identities=24%  Similarity=0.229  Sum_probs=132.9

Q ss_pred             EEecCCcCCCCCCccc--CCCCCCcEEEccCCcCCCccC----ccccCCCCCCEEeccCCcccccCcccccCCCCCCEEE
Q 038699            2 LGLAGNSIGGKIPAEI--GSLSQLVELHLSSNQLSGEIP----AHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLD   75 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~--~~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   75 (237)
                      |++++|++++..|..+  ..+++|++|++++|.+.+..+    ..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus        96 L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  175 (310)
T 4glp_A           96 LTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLD  175 (310)
T ss_dssp             EEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEE
T ss_pred             EEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEE
Confidence            6777888877777776  777788888888887775433    3344677888888888887766667777778888888


Q ss_pred             ccCCcCcCc--c--cccccCCCCCCEEEccCCcccccCCc----cccCccCccccccCcCcccccccChhhcCC---CCC
Q 038699           76 LSMNRLSGP--I--PNQIGELRDLRILNLSQNNLIGTIPF----QIGNLVGLQDLQDLSYNSLTGEIPAQLGKL---TRL  144 (237)
Q Consensus        76 l~~n~i~~~--~--~~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~---~~L  144 (237)
                      +++|.+.+.  +  +..+..+++|++|++++|.++. .+.    .+..+++|+.| ++++|.+++..|..+..+   ++|
T Consensus       176 Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L-~Ls~N~l~~~~p~~~~~~~~~~~L  253 (310)
T 4glp_A          176 LSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSL-DLSHNSLRATVNPSAPRCMWSSAL  253 (310)
T ss_dssp             CCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSE-ECTTSCCCCCCCSCCSSCCCCTTC
T ss_pred             CCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEE-ECCCCCCCccchhhHHhccCcCcC
Confidence            888876531  1  1223567778888888887752 222    24566777777 888888776656555554   578


Q ss_pred             CeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCC
Q 038699          145 QSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNK  200 (237)
Q Consensus       145 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~  200 (237)
                      ++|++++|.++ .+|..+.  ++|++|++++|++++. |....++.++.+++.+|+
T Consensus       254 ~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          254 NSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNP  305 (310)
T ss_dssp             CCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTT
T ss_pred             CEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCCC
Confidence            88888888877 5555543  6788888888888743 444566777777777775

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.91  E-value=9.2e-24  Score=191.30  Aligned_cols=199  Identities=30%  Similarity=0.280  Sum_probs=116.6

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL   81 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i   81 (237)
                      |+|++|++++..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.++...+..|..+++|++|++++|.+
T Consensus       295 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l  374 (844)
T 3j0a_A          295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL  374 (844)
T ss_dssp             EEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCS
T ss_pred             EECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCC
Confidence            45555555555555555555555555555555544455555555555555555555544444555556666666655554


Q ss_pred             cCcc------------------c----------------------ccccCCCCCCEEEccCCcccccC------------
Q 038699           82 SGPI------------------P----------------------NQIGELRDLRILNLSQNNLIGTI------------  109 (237)
Q Consensus        82 ~~~~------------------~----------------------~~~~~l~~L~~L~l~~n~~~~~~------------  109 (237)
                      ++..                  |                      ..+..+++|+.|++++|.+.+..            
T Consensus       375 ~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~  454 (844)
T 3j0a_A          375 TTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLE  454 (844)
T ss_dssp             CCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCC
T ss_pred             CcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccc
Confidence            4210                  0                      00113445555555555443211            


Q ss_pred             ------------------CccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEE
Q 038699          110 ------------------PFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAV  171 (237)
Q Consensus       110 ------------------~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  171 (237)
                                        +..+..+++|+.| ++++|.+++..+..|..+++|+.|++++|.+++..+..+.  ++|+.|
T Consensus       455 ~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L-~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L  531 (844)
T 3j0a_A          455 QLFLGENMLQLAWETELCWDVFEGLSHLQVL-YLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEIL  531 (844)
T ss_dssp             BCEEESCCCSSSCCSCCCSSCSSCBCCEECC-CCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEE
T ss_pred             cccCCCCccccccccccchhhhcCcccccEE-ECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEE
Confidence                              1234455666666 6666666666666667777777777777777754444443  677777


Q ss_pred             EcCCCcCcCCCCCCCccCCCccchhccCCccccc
Q 038699          172 NLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCGK  205 (237)
Q Consensus       172 ~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~l~~~  205 (237)
                      ++++|++++.+|..  +..+..+++.+|+..|..
T Consensus       532 ~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c  563 (844)
T 3j0a_A          532 DISRNQLLAPNPDV--FVSLSVLDITHNKFICEC  563 (844)
T ss_dssp             EEEEECCCCCCSCC--CSSCCEEEEEEECCCCSS
T ss_pred             ECCCCcCCCCChhH--hCCcCEEEecCCCccccc
Confidence            77777777666653  568889999999999843

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.91  E-value=1.6e-23  Score=181.78  Aligned_cols=187  Identities=25%  Similarity=0.215  Sum_probs=156.1

Q ss_pred             CCCCCCcEEEccCCcCCCcc--CccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCccc-ccccCCCC
Q 038699           18 GSLSQLVELHLSSNQLSGEI--PAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIP-NQIGELRD   94 (237)
Q Consensus        18 ~~l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~   94 (237)
                      ..+++|++|++++|.+.+..  +..+..+++|++|++++|.+++. +..+..+++|++|++++|.+.+..+ ..+..+++
T Consensus       344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  422 (570)
T 2z63_A          344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN  422 (570)
T ss_dssp             CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTT
T ss_pred             ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccc-cccccccCCCCEEEccCCccccccchhhhhcCCC
Confidence            56788888888888887543  56778888999999999988844 4448889999999999998886555 46788999


Q ss_pred             CCEEEccCCcccccCCccccCccCccccccCcCcccc-cccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEc
Q 038699           95 LRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLT-GEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNL  173 (237)
Q Consensus        95 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l  173 (237)
                      |++|++++|.+.+..+..+..+++|+.| ++++|.+. +..|..+..+++|+.|++++|.+++..|..+..+++|++|++
T Consensus       423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  501 (570)
T 2z63_A          423 LIYLDISHTHTRVAFNGIFNGLSSLEVL-KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM  501 (570)
T ss_dssp             CCEEECTTSCCEECCTTTTTTCTTCCEE-ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCEEeCcCCcccccchhhhhcCCcCcEE-ECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeC
Confidence            9999999999988888888999999999 99999986 467888889999999999999999777888999999999999


Q ss_pred             CCCcCcCCCCCC-CccCCCccchhccCCcccccC
Q 038699          174 SYNNLEGPLPDG-SVFSSSQSSAFTNNKDLCGKV  206 (237)
Q Consensus       174 ~~n~l~~~~~~~-~~~~~l~~~~l~~n~~l~~~~  206 (237)
                      ++|++++.++.. ..++.++.+++.+|+..|..+
T Consensus       502 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          502 ASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence            999999776653 567889999999998777543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.90  E-value=4.5e-24  Score=192.40  Aligned_cols=159  Identities=26%  Similarity=0.425  Sum_probs=112.9

Q ss_pred             cCccccCCCCCCEEeccCCcccc-----------------cCccccc--CCCCCCEEEccCCcCcCcccccccCCCCCCE
Q 038699           37 IPAHIGNLTELSTLSLNGNNISG-----------------QIPEEIG--GLLNLDSLDLSMNRLSGPIPNQIGELRDLRI   97 (237)
Q Consensus        37 ~~~~~~~l~~L~~L~l~~n~l~~-----------------~~~~~~~--~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~   97 (237)
                      +|..|..+++|+.|++++|.+++                 .+|+.++  .+++|++|++++|.+.+.+|..+..+++|++
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS  519 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence            56667777888888888888775                 2677766  7788888888888777777777778888888


Q ss_pred             EEccCCc-ccc-cCCccccCcc-------CccccccCcCcccccccCh--hhcCCCCCCeEeCcCCcCcCccCccccCCC
Q 038699           98 LNLSQNN-LIG-TIPFQIGNLV-------GLQDLQDLSYNSLTGEIPA--QLGKLTRLQSLNLSHNNLSGEIPASLSSML  166 (237)
Q Consensus        98 L~l~~n~-~~~-~~~~~~~~l~-------~L~~L~~l~~n~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~  166 (237)
                      |++++|. +++ .+|..+..++       +|+.| ++++|.+. .+|.  .+..+++|+.|++++|.++ .+| .+..++
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L-~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~  595 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIF-YMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNV  595 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEE-ECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTS
T ss_pred             EECcCCCCcccccchHHHHhhhhcccccCCccEE-EeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCC
Confidence            8888876 665 5555554444       77777 77777777 5665  6777777777777777777 555 667777


Q ss_pred             CCCEEEcCCCcCcCCCC-CCCccCC-CccchhccCC
Q 038699          167 SLVAVNLSYNNLEGPLP-DGSVFSS-SQSSAFTNNK  200 (237)
Q Consensus       167 ~L~~L~l~~n~l~~~~~-~~~~~~~-l~~~~l~~n~  200 (237)
                      +|++|++++|+++ .+| ....++. ++.+++.+|.
T Consensus       596 ~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~  630 (876)
T 4ecn_A          596 KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK  630 (876)
T ss_dssp             EESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC
T ss_pred             cceEEECcCCccc-cchHHHhhccccCCEEECcCCC
Confidence            7777777777777 343 3445555 6677776664

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.90  E-value=1.7e-24  Score=174.82  Aligned_cols=199  Identities=24%  Similarity=0.286  Sum_probs=163.0

Q ss_pred             EEecCCcCC-CCCCcccC-------CCCCCcEEEccCCcCCCccCccc--cCCCCCCEEeccCCcccccCcccccCC---
Q 038699            2 LGLAGNSIG-GKIPAEIG-------SLSQLVELHLSSNQLSGEIPAHI--GNLTELSTLSLNGNNISGQIPEEIGGL---   68 (237)
Q Consensus         2 L~l~~n~~~-~~~~~~~~-------~l~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l---   68 (237)
                      |++++|+++ ...+..+.       .+++|++|++++|.+++..|..+  ..+++|++|++++|.+++. |..+..+   
T Consensus        68 L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~  146 (312)
T 1wwl_A           68 LSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQW  146 (312)
T ss_dssp             CCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTT
T ss_pred             cccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHh
Confidence            677888884 34444443       68999999999999998888776  8999999999999999965 7777776   


Q ss_pred             --CCCCEEEccCCcCcCcccccccCCCCCCEEEccCCccccc--CCccc--cCccCccccccCcCccccc---ccChhhc
Q 038699           69 --LNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGT--IPFQI--GNLVGLQDLQDLSYNSLTG---EIPAQLG  139 (237)
Q Consensus        69 --~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~--~~l~~L~~L~~l~~n~~~~---~~~~~~~  139 (237)
                        ++|++|++++|.+.+..+..+..+++|++|++++|.+.+.  .+..+  ..+++|+.| ++++|.++.   .....+.
T Consensus       147 ~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L-~L~~N~l~~~~~~~~~~~~  225 (312)
T 1wwl_A          147 LKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVL-ALRNAGMETPSGVCSALAA  225 (312)
T ss_dssp             CCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEE-ECTTSCCCCHHHHHHHHHH
T ss_pred             hcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEE-ECCCCcCcchHHHHHHHHh
Confidence              8999999999999977778999999999999999997654  23333  889999999 999999983   2234456


Q ss_pred             CCCCCCeEeCcCCcCcCccC-ccccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCCccccc
Q 038699          140 KLTRLQSLNLSHNNLSGEIP-ASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCGK  205 (237)
Q Consensus       140 ~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~l~~~  205 (237)
                      .+++|+.|++++|.+++..| ..+..+++|++|++++|+++ .+|.... ++++.+++.+| .+.+.
T Consensus       226 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-~~L~~L~Ls~N-~l~~~  289 (312)
T 1wwl_A          226 ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-AKLSVLDLSYN-RLDRN  289 (312)
T ss_dssp             TTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-SEEEEEECCSS-CCCSC
T ss_pred             cCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-CCceEEECCCC-CCCCC
Confidence            78999999999999997654 45667899999999999999 6666544 88999999988 45555

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.90  E-value=8.5e-24  Score=182.87  Aligned_cols=197  Identities=21%  Similarity=0.208  Sum_probs=147.2

Q ss_pred             CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699            1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR   80 (237)
Q Consensus         1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   80 (237)
                      +|++++|++++..|..|..+++|++|++++|.+++..+.+|..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus        30 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~  109 (549)
T 2z81_A           30 SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP  109 (549)
T ss_dssp             EEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCC
T ss_pred             EEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCc
Confidence            37888888887777788888888888888888887677778888888888888888886666668888888888888888


Q ss_pred             CcC-cccccccCCCCCCEEEccCCcccccC-CccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCcc
Q 038699           81 LSG-PIPNQIGELRDLRILNLSQNNLIGTI-PFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEI  158 (237)
Q Consensus        81 i~~-~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  158 (237)
                      +.+ ..+..+..+++|++|++++|.+.+.. +..+..+++|+.| ++++|.+++..+..+..+++|+.|++++|.+. ..
T Consensus       110 l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L-~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~  187 (549)
T 2z81_A          110 YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL-EIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FL  187 (549)
T ss_dssp             CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE-EEEETTCCEECTTTTTTCSEEEEEEEECSBST-TH
T ss_pred             ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCee-eccCCcccccChhhhhccccCceEecccCccc-cc
Confidence            874 24566778888888888888743333 4577888888888 88888888777888888888888888888776 33


Q ss_pred             Ccc-ccCCCCCCEEEcCCCcCcCCC----CCCCccCCCccchhccC
Q 038699          159 PAS-LSSMLSLVAVNLSYNNLEGPL----PDGSVFSSSQSSAFTNN  199 (237)
Q Consensus       159 ~~~-~~~~~~L~~L~l~~n~l~~~~----~~~~~~~~l~~~~l~~n  199 (237)
                      +.. +..+++|++|++++|++++..    +.....+.++.+.+.+|
T Consensus       188 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n  233 (549)
T 2z81_A          188 LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS  233 (549)
T ss_dssp             HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESC
T ss_pred             chhhHhhcccccEEEccCCccccccccccchhhhhhcccceecccc
Confidence            333 356889999999999988632    22233445555555554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.90  E-value=9e-23  Score=179.55  Aligned_cols=197  Identities=22%  Similarity=0.277  Sum_probs=135.5

Q ss_pred             EEecCCcCCCCCCcccCCCC--CCcEEEccCCcCCCccCcccc-------CCCCCCEEeccCCcccccCcccccCCCCCC
Q 038699            2 LGLAGNSIGGKIPAEIGSLS--QLVELHLSSNQLSGEIPAHIG-------NLTELSTLSLNGNNISGQIPEEIGGLLNLD   72 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~--~L~~L~L~~n~i~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~   72 (237)
                      |++++|.++ .+|..+..+.  +|++|++++|.+.+..|..+.       .+++|++|++++|.++...+..+..+++|+
T Consensus       382 L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~  460 (636)
T 4eco_A          382 LSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS  460 (636)
T ss_dssp             EECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCS
T ss_pred             EEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCC
Confidence            667777776 5555555443  677777777777766666666       566777777777777733333455577777


Q ss_pred             EEEccCCcCcCcccc-cccCC-------CCCCEEEccCCcccccCCcccc--CccCccccccCcCcccccccChhhcCCC
Q 038699           73 SLDLSMNRLSGPIPN-QIGEL-------RDLRILNLSQNNLIGTIPFQIG--NLVGLQDLQDLSYNSLTGEIPAQLGKLT  142 (237)
Q Consensus        73 ~L~l~~n~i~~~~~~-~~~~l-------~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~~l~~n~~~~~~~~~~~~~~  142 (237)
                      +|++++|.++ .+|. .+...       ++|++|++++|.++ .+|..+.  .+++|+.| ++++|.+++ .|..+..++
T Consensus       461 ~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L-~Ls~N~l~~-ip~~~~~l~  536 (636)
T 4eco_A          461 SINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGI-DLSYNSFSK-FPTQPLNSS  536 (636)
T ss_dssp             EEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEE-ECCSSCCSS-CCCGGGGCS
T ss_pred             EEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEE-ECCCCCCCC-cChhhhcCC
Confidence            7777777777 4443 23222       27788888888777 5666665  77888888 888888875 676777788


Q ss_pred             CCCeEeC------cCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCCccccc
Q 038699          143 RLQSLNL------SHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCGK  205 (237)
Q Consensus       143 ~L~~L~l------~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~l~~~  205 (237)
                      +|+.|++      ++|.+.+..|..+..+++|++|++++|++. .+|.. .++.++.+++.+|+..|-.
T Consensus       537 ~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~-~~~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          537 TLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEK-ITPNISVLDIKDNPNISID  603 (636)
T ss_dssp             SCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSC-CCTTCCEEECCSCTTCEEE
T ss_pred             CCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHh-HhCcCCEEECcCCCCcccc
Confidence            8888888      456666677777888888888888888884 56654 3377888888888766644

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.90  E-value=1.2e-22  Score=163.81  Aligned_cols=185  Identities=26%  Similarity=0.429  Sum_probs=156.1

Q ss_pred             CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699            1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR   80 (237)
Q Consensus         1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   80 (237)
                      .|++++|+++.. + .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+++ + ..+..+++|++|++++|.
T Consensus        45 ~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l~~n~  118 (308)
T 1h6u_A           45 TLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQ  118 (308)
T ss_dssp             EEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSC
T ss_pred             EEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEEECCCCC
Confidence            378999999864 3 58889999999999999995444  8899999999999999984 3 468899999999999999


Q ss_pred             CcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCc
Q 038699           81 LSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPA  160 (237)
Q Consensus        81 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  160 (237)
                      +.+. + .+..+++|++|++++|.+.+..+  +..+++|+.| ++++|.+++..+  +..+++|+.|++++|.+++..+ 
T Consensus       119 l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L-~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-  190 (308)
T 1h6u_A          119 ITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYL-SIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP-  190 (308)
T ss_dssp             CCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEE-ECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-
T ss_pred             CCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEE-EccCCcCCCChh--hcCCCCCCEEECCCCccCcChh-
Confidence            9854 4 38899999999999999985433  8889999999 999999985433  8889999999999999985443 


Q ss_pred             cccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCCc
Q 038699          161 SLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKD  201 (237)
Q Consensus       161 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~  201 (237)
                       +..+++|++|++++|++++.. ....+++++.+++.+|+.
T Consensus       191 -l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          191 -LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTI  229 (308)
T ss_dssp             -GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEE
T ss_pred             -hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCee
Confidence             788999999999999999555 467788899999998864

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.90  E-value=4.9e-23  Score=180.13  Aligned_cols=195  Identities=22%  Similarity=0.232  Sum_probs=161.5

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL   81 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i   81 (237)
                      ++.++++++.+ |..+.  +++++|++++|.+++..+..|.++++|++|++++|.+++..|..|..+++|++|++++|.+
T Consensus        16 ~~c~~~~l~~i-p~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l   92 (606)
T 3vq2_A           16 YQCMDQKLSKV-PDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI   92 (606)
T ss_dssp             EECTTSCCSSC-CTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             eEccCCCcccC-CCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcc
Confidence            57778888744 44443  7899999999999877777889999999999999999877788889999999999999999


Q ss_pred             cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCccccc-ccChhhcCCCCCCeEeCcCCcCcCccCc
Q 038699           82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTG-EIPAQLGKLTRLQSLNLSHNNLSGEIPA  160 (237)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~  160 (237)
                      .+..|..+..+++|++|++++|.+.+..+..++.+++|++| ++++|.+.+ ..|..+..+++|++|++++|.+++..+.
T Consensus        93 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L-~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~  171 (606)
T 3vq2_A           93 QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL-NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN  171 (606)
T ss_dssp             CCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEE-ECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT
T ss_pred             cccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEE-eCCCCcccceechHhHhhcCCCCEEEccCCcceecChh
Confidence            87778889999999999999999987776788999999999 999999875 4588889999999999999999877777


Q ss_pred             cccCCCCCC----EEEcCCCcCcCCCCCCCccCCCccchhccCC
Q 038699          161 SLSSMLSLV----AVNLSYNNLEGPLPDGSVFSSSQSSAFTNNK  200 (237)
Q Consensus       161 ~~~~~~~L~----~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~  200 (237)
                      .+..+++|+    +|++++|++++..+.......++.+++.+|.
T Consensus       172 ~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~  215 (606)
T 3vq2_A          172 DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNF  215 (606)
T ss_dssp             TTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCC
T ss_pred             hhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCc
Confidence            777665554    8999999998766666555578888888774

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.89  E-value=6e-23  Score=176.57  Aligned_cols=198  Identities=22%  Similarity=0.269  Sum_probs=157.1

Q ss_pred             EEecCCcCCCCCCccc-----CCCCCCcEEEccCCcC--------------------------CCccCccccCCCCCCEE
Q 038699            2 LGLAGNSIGGKIPAEI-----GSLSQLVELHLSSNQL--------------------------SGEIPAHIGNLTELSTL   50 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~-----~~l~~L~~L~L~~n~i--------------------------~~~~~~~~~~l~~L~~L   50 (237)
                      |++++|.+++.+|..+     ..+++|+.+++++|.+                          ....  .+..+++|++|
T Consensus       252 L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L  329 (520)
T 2z7x_B          252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHL  329 (520)
T ss_dssp             EEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEE
T ss_pred             EEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEE
Confidence            6788888887777776     6666666666555554                          2111  02578899999


Q ss_pred             eccCCcccccCcccccCCCCCCEEEccCCcCcC--cccccccCCCCCCEEEccCCcccccCCc-cccCccCccccccCcC
Q 038699           51 SLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSG--PIPNQIGELRDLRILNLSQNNLIGTIPF-QIGNLVGLQDLQDLSY  127 (237)
Q Consensus        51 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~~l~~  127 (237)
                      ++++|.+++..|..+..+++|++|++++|.+.+  .+|..+..+++|++|++++|.+.+..|. .+..+++|+.| ++++
T Consensus       330 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L-~Ls~  408 (520)
T 2z7x_B          330 DFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL-NMSS  408 (520)
T ss_dssp             ECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEE-ECCS
T ss_pred             EeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEE-ECcC
Confidence            999999997788889999999999999999985  4556788999999999999999874554 47888999999 9999


Q ss_pred             cccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCC-CCccCCCccchhccCCccccc
Q 038699          128 NSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPD-GSVFSSSQSSAFTNNKDLCGK  205 (237)
Q Consensus       128 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~l~~~~l~~n~~l~~~  205 (237)
                      |.+++..+..+.  ++|+.|++++|.++ .+|..+..+++|++|++++|++++..+. ...++.++.+++.+|+..|..
T Consensus       409 N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c  484 (520)
T 2z7x_B          409 NILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  484 (520)
T ss_dssp             SCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccC
Confidence            998766665543  78999999999998 7787777999999999999999954443 456788999999999887743

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.89  E-value=2.4e-23  Score=187.65  Aligned_cols=193  Identities=24%  Similarity=0.376  Sum_probs=158.4

Q ss_pred             CEEecCCcCCC-----------------CCCcccC--CCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCc-ccc-
Q 038699            1 MLGLAGNSIGG-----------------KIPAEIG--SLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNN-ISG-   59 (237)
Q Consensus         1 ~L~l~~n~~~~-----------------~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~-   59 (237)
                      +|+|++|++++                 .+|+.+.  ++++|++|+|++|.+.+.+|..|..+++|+.|++++|. +++ 
T Consensus       452 ~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~  531 (876)
T 4ecn_A          452 IIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA  531 (876)
T ss_dssp             EEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHH
T ss_pred             EEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccc
Confidence            48999999998                 3788877  99999999999999988999999999999999999998 886 


Q ss_pred             cCcccccCC-------CCCCEEEccCCcCcCcccc--cccCCCCCCEEEccCCcccccCCccccCccCccccccCcCccc
Q 038699           60 QIPEEIGGL-------LNLDSLDLSMNRLSGPIPN--QIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSL  130 (237)
Q Consensus        60 ~~~~~~~~l-------~~L~~L~l~~n~i~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~  130 (237)
                      .+|..+..+       ++|+.|++++|.+. .+|.  .+..+++|++|++++|.+. .+| .+..+++|+.| ++++|.+
T Consensus       532 ~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L-~Ls~N~l  607 (876)
T 4ecn_A          532 QLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDL-KLDYNQI  607 (876)
T ss_dssp             HHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEE-ECCSSCC
T ss_pred             cchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEE-ECcCCcc
Confidence            677666555       49999999999999 7787  8999999999999999998 777 88899999999 9999999


Q ss_pred             ccccChhhcCCCC-CCeEeCcCCcCcCccCccccCCCC--CCEEEcCCCcCcCCCCCCC------ccCCCccchhccC
Q 038699          131 TGEIPAQLGKLTR-LQSLNLSHNNLSGEIPASLSSMLS--LVAVNLSYNNLEGPLPDGS------VFSSSQSSAFTNN  199 (237)
Q Consensus       131 ~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~--L~~L~l~~n~l~~~~~~~~------~~~~l~~~~l~~n  199 (237)
                      . ..|..+..+++ |+.|++++|.++ .+|..+..++.  |+.|++++|++++.+|...      ..++++.+++.+|
T Consensus       608 ~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N  683 (876)
T 4ecn_A          608 E-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN  683 (876)
T ss_dssp             S-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS
T ss_pred             c-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC
Confidence            8 77777888888 999999999988 67777766544  8888888888877655432      1224555555544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.89  E-value=1.2e-22  Score=176.40  Aligned_cols=159  Identities=21%  Similarity=0.227  Sum_probs=128.2

Q ss_pred             cCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCc--ccccccCCCCCCEEEccCCcccccCC-ccccCccC
Q 038699           42 GNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGP--IPNQIGELRDLRILNLSQNNLIGTIP-FQIGNLVG  118 (237)
Q Consensus        42 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~  118 (237)
                      ..+++|++|++++|.+++..|..+..+++|++|++++|.+++.  .|..+..+++|++|++++|.+.+..| ..+..+++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            5778899999999999877888888999999999999988852  34567888999999999999886344 45788889


Q ss_pred             ccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCC-CCccCCCccchhc
Q 038699          119 LQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPD-GSVFSSSQSSAFT  197 (237)
Q Consensus       119 L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~l~~~~l~  197 (237)
                      |+.| ++++|.+++..+..+.  ++|+.|++++|.++ .+|..+..+++|++|++++|++++..+. ...++.++.+++.
T Consensus       430 L~~L-~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~  505 (562)
T 3a79_B          430 ILVL-NLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLH  505 (562)
T ss_dssp             CCEE-ECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECC
T ss_pred             CCEE-ECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEec
Confidence            9999 9999988765554432  68999999999998 6666666889999999999999954444 4667888889999


Q ss_pred             cCCcccc
Q 038699          198 NNKDLCG  204 (237)
Q Consensus       198 ~n~~l~~  204 (237)
                      +|+..|.
T Consensus       506 ~N~~~c~  512 (562)
T 3a79_B          506 DNPWDCT  512 (562)
T ss_dssp             SCCBCCC
T ss_pred             CCCcCCC
Confidence            9988774

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.89  E-value=2.2e-22  Score=182.35  Aligned_cols=178  Identities=26%  Similarity=0.277  Sum_probs=134.6

Q ss_pred             CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCcc-CccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCC
Q 038699            1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEI-PAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMN   79 (237)
Q Consensus         1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   79 (237)
                      +|||++|.+++..+..|..+++|++|++++|...+.+ +.+|..+++|++|++++|.+++..|+.|..+++|++|++++|
T Consensus        28 ~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n  107 (844)
T 3j0a_A           28 RLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC  107 (844)
T ss_dssp             EEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTC
T ss_pred             EEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCC
Confidence            3889999999888888999999999999998655444 778899999999999999998778888999999999999999


Q ss_pred             cCcCccccc--ccCCCCCCEEEccCCcccccCC-ccccCccCccccccCcCcccccccChhhcCC--CCCCeEeCcCCcC
Q 038699           80 RLSGPIPNQ--IGELRDLRILNLSQNNLIGTIP-FQIGNLVGLQDLQDLSYNSLTGEIPAQLGKL--TRLQSLNLSHNNL  154 (237)
Q Consensus        80 ~i~~~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~--~~L~~L~l~~n~l  154 (237)
                      .+.+..+..  +..+++|++|++++|.+.+..+ ..++.+++|+.| ++++|.+++..+..+..+  ++|+.|++++|.+
T Consensus       108 ~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L-~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l  186 (844)
T 3j0a_A          108 GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI-DFSSNQIFLVCEHELEPLQGKTLSFFSLAANSL  186 (844)
T ss_dssp             CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEE-EEESSCCCCCCSGGGHHHHHCSSCCCEECCSBS
T ss_pred             CCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEE-ECCCCcCCeeCHHHcccccCCccceEECCCCcc
Confidence            988655544  8889999999999998876544 568888999999 899888876666666554  5566666666655


Q ss_pred             cCccCccccCCCC------CCEEEcCCCcCc
Q 038699          155 SGEIPASLSSMLS------LVAVNLSYNNLE  179 (237)
Q Consensus       155 ~~~~~~~~~~~~~------L~~L~l~~n~l~  179 (237)
                      .+..+..+..+++      |++|++++|.++
T Consensus       187 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~  217 (844)
T 3j0a_A          187 YSRVSVDWGKCMNPFRNMVLEILDVSGNGWT  217 (844)
T ss_dssp             CCCCCCCCCSSSCTTTTCCBSEEBCSSCCSS
T ss_pred             ccccccchhhcCCccccCceeEEecCCCcCc
Confidence            5444433333322      444444444433

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.89  E-value=2.5e-22  Score=164.22  Aligned_cols=185  Identities=23%  Similarity=0.351  Sum_probs=97.6

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL   81 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i   81 (237)
                      |++++|......+ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+++. +. +..+++|+.|++++|.+
T Consensus       137 L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l  211 (347)
T 4fmz_A          137 LNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQI  211 (347)
T ss_dssp             EECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCC
T ss_pred             EECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc-cc-ccCCCccceeecccCCC
Confidence            5667775544333 36667777777777776663332  56666777777777766632 22 45555555555555555


Q ss_pred             cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCcc
Q 038699           82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPAS  161 (237)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  161 (237)
                      .+..+  +..+++|++|++++|.+++..+  +..+++|+.| ++++|.+++.  ..+..+++|+.|++++|.+++.  ..
T Consensus       212 ~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L-~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~  282 (347)
T 4fmz_A          212 TDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWL-EIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SV  282 (347)
T ss_dssp             CCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEE-ECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GG
T ss_pred             CCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEE-ECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hh
Confidence            53322  4555555555555555543222  4555555555 5555555422  2344555555555555555432  23


Q ss_pred             ccCCCCCCEEEcCCCcCcCCCCCC-CccCCCccchhccCC
Q 038699          162 LSSMLSLVAVNLSYNNLEGPLPDG-SVFSSSQSSAFTNNK  200 (237)
Q Consensus       162 ~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~l~~~~l~~n~  200 (237)
                      +..+++|++|++++|++++..+.. ..++.++.+++.+|+
T Consensus       283 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  322 (347)
T 4fmz_A          283 LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH  322 (347)
T ss_dssp             GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred             hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence            445555555555555554333321 234445555555553

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.89  E-value=6.3e-23  Score=178.03  Aligned_cols=184  Identities=24%  Similarity=0.223  Sum_probs=164.9

Q ss_pred             CEEecCCcCCCCC--CcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCc-ccccCCCCCCEEEcc
Q 038699            1 MLGLAGNSIGGKI--PAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIP-EEIGGLLNLDSLDLS   77 (237)
Q Consensus         1 ~L~l~~n~~~~~~--~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~   77 (237)
                      +|++++|++++..  +..+..+++|++|++++|.+.+..+ .+..+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus       351 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  429 (570)
T 2z63_A          351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS  429 (570)
T ss_dssp             EEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECT
T ss_pred             EEeCcCCccCccccccccccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCc
Confidence            3788889888654  6678899999999999999995444 48999999999999999986655 578899999999999


Q ss_pred             CCcCcCcccccccCCCCCCEEEccCCccc-ccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcC
Q 038699           78 MNRLSGPIPNQIGELRDLRILNLSQNNLI-GTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSG  156 (237)
Q Consensus        78 ~n~i~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~  156 (237)
                      +|.+.+..+..+..+++|++|++++|.+. +..|..+..+++|+.| ++++|.+++..+..+..+++|+.|++++|.+++
T Consensus       430 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  508 (570)
T 2z63_A          430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL-DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS  508 (570)
T ss_dssp             TSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE-ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEE-ECCCCccccCChhhhhcccCCCEEeCCCCcCCC
Confidence            99999888888999999999999999997 5688899999999999 999999998889999999999999999999998


Q ss_pred             ccCccccCCCCCCEEEcCCCcCcCCCCCCC
Q 038699          157 EIPASLSSMLSLVAVNLSYNNLEGPLPDGS  186 (237)
Q Consensus       157 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  186 (237)
                      ..+..+..+++|++|++++|++++.+|...
T Consensus       509 ~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~  538 (570)
T 2z63_A          509 VPDGIFDRLTSLQKIWLHTNPWDCSCPRID  538 (570)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred             CCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence            878889999999999999999998877653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.89  E-value=3.6e-22  Score=152.00  Aligned_cols=172  Identities=24%  Similarity=0.240  Sum_probs=107.2

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL   81 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i   81 (237)
                      ++.++++++.. |..+  .+++++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+
T Consensus        12 v~c~~~~l~~~-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l   88 (208)
T 2o6s_A           12 VECYSQGRTSV-PTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL   88 (208)
T ss_dssp             EECCSSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEecCCCccCC-CCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence            34555555533 2222  34667777777777655555566677777777777777654445566667777777777776


Q ss_pred             cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCcc
Q 038699           82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPAS  161 (237)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  161 (237)
                      ++..+..+..+++|++|++++|.+.+..+..+..+++|+.| ++++|.+++..+..+..+++|+.|++++|.+..     
T Consensus        89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L-~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-----  162 (208)
T 2o6s_A           89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDL-RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-----  162 (208)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE-ECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-----
T ss_pred             CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEE-ECCCCccceeCHHHhccCCCccEEEecCCCeec-----
Confidence            64444456666777777777776665555556666666666 666666665555556666666666666665542     


Q ss_pred             ccCCCCCCEEEcCCCcCcCCCCC
Q 038699          162 LSSMLSLVAVNLSYNNLEGPLPD  184 (237)
Q Consensus       162 ~~~~~~L~~L~l~~n~l~~~~~~  184 (237)
                        .+++|+.|++..|++++.+|.
T Consensus       163 --~~~~l~~L~~~~n~~~g~ip~  183 (208)
T 2o6s_A          163 --TCPGIRYLSEWINKHSGVVRN  183 (208)
T ss_dssp             --CTTTTHHHHHHHHHCTTTBBC
T ss_pred             --CCCCHHHHHHHHHhCCceeec
Confidence              345566666666666666654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.89  E-value=2e-22  Score=173.28  Aligned_cols=102  Identities=31%  Similarity=0.373  Sum_probs=76.6

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL   81 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i   81 (237)
                      |++++|++++..|..|..+++|++|++++|.+++..|..|..+++|++|++++|.++ .+|..  .+++|++|++++|.+
T Consensus        26 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l  102 (520)
T 2z7x_B           26 LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAF  102 (520)
T ss_dssp             EECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCC
T ss_pred             EECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCcc
Confidence            677788877777777777888888888888887666777778888888888888777 45544  677888888888877


Q ss_pred             cC-cccccccCCCCCCEEEccCCccc
Q 038699           82 SG-PIPNQIGELRDLRILNLSQNNLI  106 (237)
Q Consensus        82 ~~-~~~~~~~~l~~L~~L~l~~n~~~  106 (237)
                      .+ ..|..++.+++|++|++++|.+.
T Consensus       103 ~~~~~p~~~~~l~~L~~L~L~~n~l~  128 (520)
T 2z7x_B          103 DALPICKEFGNMSQLKFLGLSTTHLE  128 (520)
T ss_dssp             SSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred             ccccchhhhccCCcceEEEecCcccc
Confidence            75 35667777777777777777664

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.88  E-value=3.6e-22  Score=173.37  Aligned_cols=104  Identities=28%  Similarity=0.281  Sum_probs=86.0

Q ss_pred             CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699            1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR   80 (237)
Q Consensus         1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   80 (237)
                      +|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|.++ .+|..  .+++|++|++++|.
T Consensus        56 ~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~  132 (562)
T 3a79_B           56 ALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFND  132 (562)
T ss_dssp             EEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSC
T ss_pred             EEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCC
Confidence            3788899998888888889999999999999998777888888999999999999888 55555  78889999999988


Q ss_pred             CcCc-ccccccCCCCCCEEEccCCcccc
Q 038699           81 LSGP-IPNQIGELRDLRILNLSQNNLIG  107 (237)
Q Consensus        81 i~~~-~~~~~~~l~~L~~L~l~~n~~~~  107 (237)
                      +.+. .|..+..+++|++|++++|.+..
T Consensus       133 l~~l~~p~~~~~l~~L~~L~L~~n~l~~  160 (562)
T 3a79_B          133 FDVLPVCKEFGNLTKLTFLGLSAAKFRQ  160 (562)
T ss_dssp             CSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred             ccccCchHhhcccCcccEEecCCCcccc
Confidence            8753 35678888888888888887653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.88  E-value=2.7e-22  Score=154.08  Aligned_cols=153  Identities=24%  Similarity=0.267  Sum_probs=114.5

Q ss_pred             cEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCC
Q 038699           24 VELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQN  103 (237)
Q Consensus        24 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n  103 (237)
                      +.++++++.++ .+|..+.  ++++.|++++|.+++..+..|..+++|+.|++++|.+.+..+..|..+++|++|++++|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            46677777776 4454333  56777777777777666667777777777777777777666677777777888888888


Q ss_pred             cccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcC
Q 038699          104 NLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEG  180 (237)
Q Consensus       104 ~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  180 (237)
                      .++...+..+..+++|+.| ++++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|++|++++|++..
T Consensus        91 ~l~~l~~~~f~~l~~L~~L-~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLL-LLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEE-ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             cCCccCHhHccCCCCCCEE-ECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            7775555566777888888 888888877777778888888888888888886666778888888888888888864

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.88  E-value=2.2e-22  Score=154.64  Aligned_cols=156  Identities=21%  Similarity=0.228  Sum_probs=123.1

Q ss_pred             cEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCc-ccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccC
Q 038699           24 VELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIP-EEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQ  102 (237)
Q Consensus        24 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~  102 (237)
                      +.+++++|.++ .+|..+.  ..+++|++++|.+++..+ ..|..+++|+.|++++|.+++..+..+..+++|++|++++
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            57788888877 4554442  356788888888875533 4577888888888888888866666788888888888888


Q ss_pred             CcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCC
Q 038699          103 NNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPL  182 (237)
Q Consensus       103 n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~  182 (237)
                      |.+++..+..+..+++|+.| ++++|.+++..+..|..+++|+.|++++|.+++..|..|..+++|++|++++|++.+..
T Consensus        91 N~l~~~~~~~~~~l~~L~~L-~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTL-MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEE-ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred             CccCccCHhHhcCCcCCCEE-ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence            88887767778888888888 88888888777888888888999999999888777888888899999999999888654


Q ss_pred             C
Q 038699          183 P  183 (237)
Q Consensus       183 ~  183 (237)
                      +
T Consensus       170 ~  170 (220)
T 2v70_A          170 Y  170 (220)
T ss_dssp             G
T ss_pred             c
Confidence            4

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.88  E-value=6.9e-23  Score=165.80  Aligned_cols=207  Identities=24%  Similarity=0.211  Sum_probs=152.4

Q ss_pred             EecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCc
Q 038699            3 GLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLS   82 (237)
Q Consensus         3 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~   82 (237)
                      +++.+.+.......+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+  +..+++|++|++++|.++
T Consensus        16 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~   93 (317)
T 3o53_A           16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ   93 (317)
T ss_dssp             SCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEE
T ss_pred             eccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccc
Confidence            455556655555556777899999999999998777889999999999999999985543  889999999999999876


Q ss_pred             Ccccc----------------cccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhh-cCCCCCC
Q 038699           83 GPIPN----------------QIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQL-GKLTRLQ  145 (237)
Q Consensus        83 ~~~~~----------------~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~-~~~~~L~  145 (237)
                      +..+.                ....+++|++|++++|.+.+..+..+..+++|+.| ++++|.+++..+..+ ..+++|+
T Consensus        94 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L-~Ls~N~l~~~~~~~~~~~l~~L~  172 (317)
T 3o53_A           94 ELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYL-DLKLNEIDTVNFAELAASSDTLE  172 (317)
T ss_dssp             EEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEE-ECTTSCCCEEEGGGGGGGTTTCC
T ss_pred             cccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEE-ECCCCCCCcccHHHHhhccCcCC
Confidence            32110                01235567777777777776666677778888888 888888876666555 3678888


Q ss_pred             eEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCCcccccCCCCCCCCCC
Q 038699          146 SLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCGKVQGLRPCNAL  215 (237)
Q Consensus       146 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~l~~~~~~~~~C~~~  215 (237)
                      .|++++|.+++. +. ...+++|++|++++|++++..+....++.++.+++.+|. +.+.+..+..+..+
T Consensus       173 ~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L  239 (317)
T 3o53_A          173 HLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNL  239 (317)
T ss_dssp             EEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTC
T ss_pred             EEECCCCcCccc-cc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCc-ccchhhHhhcCCCC
Confidence            888888888744 32 234788888888888888766666667888888888874 44555444444443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.87  E-value=2.2e-22  Score=171.81  Aligned_cols=191  Identities=25%  Similarity=0.219  Sum_probs=147.7

Q ss_pred             CCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccc-----------
Q 038699           19 SLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPN-----------   87 (237)
Q Consensus        19 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~-----------   87 (237)
                      .+++|+.|+|++|.+++..|..|..+++|++|++++|.+++..+  +..+++|++|++++|.+++..+.           
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N  109 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANN  109 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSS
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCC
Confidence            34589999999999998888899999999999999999986554  88899999999999887632211           


Q ss_pred             -----cccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhc-CCCCCCeEeCcCCcCcCccCcc
Q 038699           88 -----QIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLG-KLTRLQSLNLSHNNLSGEIPAS  161 (237)
Q Consensus        88 -----~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~  161 (237)
                           ....+++|++|++++|.+++..|..+..+++|+.| ++++|.+++..+..+. .+++|+.|++++|.+++. +. 
T Consensus       110 ~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L-~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-  186 (487)
T 3oja_A          110 NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYL-DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-  186 (487)
T ss_dssp             CCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEE-ECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-
T ss_pred             cCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEE-ECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-
Confidence                 01235677788888888877777778888888888 8888888877776665 678888888888888754 22 


Q ss_pred             ccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCCcccccCCCCCCCCCC
Q 038699          162 LSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCGKVQGLRPCNAL  215 (237)
Q Consensus       162 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~l~~~~~~~~~C~~~  215 (237)
                      ...+++|++|++++|.+++.+|....++.+..+++.+| .+.+.++.+..+..+
T Consensus       187 ~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L  239 (487)
T 3oja_A          187 QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNL  239 (487)
T ss_dssp             CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTC
T ss_pred             cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCC-cCcccchhhccCCCC
Confidence            33588899999999999877777677788888888887 456655554444433

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.87  E-value=6e-22  Score=163.09  Aligned_cols=175  Identities=27%  Similarity=0.257  Sum_probs=142.5

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCcccc-CCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIG-NLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR   80 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   80 (237)
                      +++++++++. +|..+.  +.++.|+|++|.+++..+..|. .+++|++|++++|.+++..+..|..+++|++|++++|.
T Consensus        23 l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~   99 (361)
T 2xot_A           23 LSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH   99 (361)
T ss_dssp             EECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence            6788888885 444442  4588999999999977777777 88999999999999987777788899999999999999


Q ss_pred             CcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhh---cCCCCCCeEeCcCCcCcCc
Q 038699           81 LSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQL---GKLTRLQSLNLSHNNLSGE  157 (237)
Q Consensus        81 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~---~~~~~L~~L~l~~n~l~~~  157 (237)
                      +....+..|..+++|++|++++|.+....+..+..+++|+.| ++++|.++...+..|   ..+++|+.|++++|.++..
T Consensus       100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L-~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  178 (361)
T 2xot_A          100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL-YLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL  178 (361)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE-ECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred             CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEE-ECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence            986666678889999999999999987778889999999999 999999986555555   5688999999999999865


Q ss_pred             cCccccCCCC--CCEEEcCCCcCcC
Q 038699          158 IPASLSSMLS--LVAVNLSYNNLEG  180 (237)
Q Consensus       158 ~~~~~~~~~~--L~~L~l~~n~l~~  180 (237)
                      .+..+..++.  ++.|++++|++..
T Consensus       179 ~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          179 PLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             CHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             CHHHhhhccHhhcceEEecCCCccC
Confidence            5566777776  4789999998874

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=2.7e-21  Score=155.88  Aligned_cols=165  Identities=28%  Similarity=0.449  Sum_probs=143.9

Q ss_pred             CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699            1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR   80 (237)
Q Consensus         1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   80 (237)
                      +|++++|++++..+  +..+++|++|++++|.+.+. + .+..+++|++|++++|.+++ ++ .+..+++|++|++++|.
T Consensus        67 ~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~  140 (308)
T 1h6u_A           67 GLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQ  140 (308)
T ss_dssp             EEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSC
T ss_pred             EEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCc
Confidence            48999999997665  99999999999999999853 3 68899999999999999985 44 38899999999999999


Q ss_pred             CcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCc
Q 038699           81 LSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPA  160 (237)
Q Consensus        81 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  160 (237)
                      +.+..+  +..+++|++|++++|.+.+..+  +..+++|+.| ++++|.+++..+  +..+++|+.|++++|.+++..  
T Consensus       141 l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L-~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--  211 (308)
T 1h6u_A          141 ITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTL-KADDNKISDISP--LASLPNLIEVHLKNNQISDVS--  211 (308)
T ss_dssp             CCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEE-ECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--
T ss_pred             cCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEE-ECCCCccCcChh--hcCCCCCCEEEccCCccCccc--
Confidence            985433  8899999999999999985433  8899999999 999999985443  788999999999999998544  


Q ss_pred             cccCCCCCCEEEcCCCcCcC
Q 038699          161 SLSSMLSLVAVNLSYNNLEG  180 (237)
Q Consensus       161 ~~~~~~~L~~L~l~~n~l~~  180 (237)
                      .+..+++|++|++++|++++
T Consensus       212 ~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          212 PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             GGTTCTTCCEEEEEEEEEEC
T ss_pred             cccCCCCCCEEEccCCeeec
Confidence            37899999999999999985

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.87  E-value=2.3e-22  Score=173.86  Aligned_cols=197  Identities=22%  Similarity=0.222  Sum_probs=169.1

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL   81 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i   81 (237)
                      .|.++++++.+ |..+.  ++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+
T Consensus        10 c~~~~~~l~~i-p~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l   86 (549)
T 2z81_A           10 CDGRSRSFTSI-PSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL   86 (549)
T ss_dssp             EECTTSCCSSC-CSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             EECCCCccccc-cccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc
Confidence            46788888854 44443  7899999999999987788999999999999999999988888999999999999999999


Q ss_pred             cCcccccccCCCCCCEEEccCCccccc-CCccccCccCccccccCcCcc-cccccChhhcCCCCCCeEeCcCCcCcCccC
Q 038699           82 SGPIPNQIGELRDLRILNLSQNNLIGT-IPFQIGNLVGLQDLQDLSYNS-LTGEIPAQLGKLTRLQSLNLSHNNLSGEIP  159 (237)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  159 (237)
                      .+..+..+..+++|++|++++|.+.+. .+..+..+++|+.| ++++|. +....+..+..+++|++|++++|.+++..|
T Consensus        87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L-~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  165 (549)
T 2z81_A           87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL-RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS  165 (549)
T ss_dssp             CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEE-EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred             CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEE-ECCCCccccccCHhhhhcccccCeeeccCCcccccCh
Confidence            977777799999999999999999853 46789999999999 999998 554445689999999999999999998889


Q ss_pred             ccccCCCCCCEEEcCCCcCcCCCCCC--CccCCCccchhccCCcccc
Q 038699          160 ASLSSMLSLVAVNLSYNNLEGPLPDG--SVFSSSQSSAFTNNKDLCG  204 (237)
Q Consensus       160 ~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~~l~~~~l~~n~~l~~  204 (237)
                      ..+..+++|++|++++|.+.. +|..  ..++.++.+++.+|. +.+
T Consensus       166 ~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~-l~~  210 (549)
T 2z81_A          166 QSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTN-LAR  210 (549)
T ss_dssp             TTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCB-CTT
T ss_pred             hhhhccccCceEecccCcccc-cchhhHhhcccccEEEccCCc-ccc
Confidence            999999999999999999863 3332  246788999998884 444

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.87  E-value=2.1e-21  Score=170.11  Aligned_cols=190  Identities=24%  Similarity=0.241  Sum_probs=143.9

Q ss_pred             CCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcc
Q 038699            6 GNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPI   85 (237)
Q Consensus         6 ~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~   85 (237)
                      +-+++ .+|..+.  +++++|+|++|.|++..+.+|..+++|++|+|++|.+++..++.|..+++|++|++++|.+++..
T Consensus        40 ~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~  116 (635)
T 4g8a_A           40 ELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA  116 (635)
T ss_dssp             TSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred             CCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCC
Confidence            34555 3343332  46889999999998766778889999999999999988777778888999999999999988665


Q ss_pred             cccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccc-cChhhcCCCCCCeEeCcCCcCcCccCccccC
Q 038699           86 PNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGE-IPAQLGKLTRLQSLNLSHNNLSGEIPASLSS  164 (237)
Q Consensus        86 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  164 (237)
                      +..|..+++|++|++++|.+++..+..++.+++|+.| ++++|.++.. .+..+..+++|+.|++++|.+++..+..+..
T Consensus       117 ~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L-~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~  195 (635)
T 4g8a_A          117 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL-NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV  195 (635)
T ss_dssp             GGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEE-ECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred             HHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCee-ccccCccccCCCchhhccchhhhhhcccCccccccccccccc
Confidence            6778889999999999998887666778889999999 9999988753 4677788889999999999888766666655


Q ss_pred             CCC----CCEEEcCCCcCcCCCCCCCccCCCccchhccC
Q 038699          165 MLS----LVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNN  199 (237)
Q Consensus       165 ~~~----L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n  199 (237)
                      +.+    ...++++.|++....+..........+.+.+|
T Consensus       196 L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n  234 (635)
T 4g8a_A          196 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN  234 (635)
T ss_dssp             HHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred             hhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcc
Confidence            443    34688888888865555444334444444443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.87  E-value=4e-21  Score=163.24  Aligned_cols=184  Identities=30%  Similarity=0.430  Sum_probs=112.7

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL   81 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i   81 (237)
                      |++++|.+++..+  +..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+  +..+++|++|++++|.+
T Consensus       204 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l  277 (466)
T 1o6v_A          204 LIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI  277 (466)
T ss_dssp             EECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCC
T ss_pred             EEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCcc
Confidence            3444444443332  33444455555555544422  234555566666666665553322  55666666666666666


Q ss_pred             cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCcc
Q 038699           82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPAS  161 (237)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  161 (237)
                      .+..+  +..+++|+.|++++|.+.+..+  +..+++|+.| ++++|.+.+..+  +..+++|+.|++++|.+++.  ..
T Consensus       278 ~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L-~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~  348 (466)
T 1o6v_A          278 SNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYL-TLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SS  348 (466)
T ss_dssp             CCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEE-ECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GG
T ss_pred             Ccccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEE-ECcCCcCCCchh--hccCccCCEeECCCCccCCc--hh
Confidence            64322  5666677777777776664332  5667777777 777777765443  56677777777777777643  45


Q ss_pred             ccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCCc
Q 038699          162 LSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKD  201 (237)
Q Consensus       162 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~  201 (237)
                      +..+++|++|++++|++++..| ...++.++.+++.+|+.
T Consensus       349 l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~  387 (466)
T 1o6v_A          349 LANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAW  387 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEE
T ss_pred             hccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcc
Confidence            6777888888888888876666 56677788888877743

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.87  E-value=4.1e-21  Score=147.52  Aligned_cols=150  Identities=23%  Similarity=0.300  Sum_probs=135.7

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL   81 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i   81 (237)
                      +++++++++.+ |..+.  ++++.|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+
T Consensus        16 v~c~~~~l~~i-P~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l   92 (220)
T 2v9t_B           16 VDCRGKGLTEI-PTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI   92 (220)
T ss_dssp             EECTTSCCSSC-CSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred             EEcCCCCcCcC-CCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence            67888999854 44443  6899999999999977777899999999999999999988899999999999999999999


Q ss_pred             cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCc
Q 038699           82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLS  155 (237)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  155 (237)
                      +...+..|..+++|++|++++|.+.+..+..+..+++|+.| ++++|.+++..+..|..+++|+.|++++|.+.
T Consensus        93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L-~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLL-SLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE-ECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEE-ECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            96655678899999999999999998888899999999999 99999999888888999999999999999886

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.86  E-value=8.3e-21  Score=161.26  Aligned_cols=195  Identities=28%  Similarity=0.403  Sum_probs=150.8

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL   81 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i   81 (237)
                      |++++|.++..  +.+..+++|++|++++|.+.+..+  +..+++|++|++++|.+++.  ..+..+++|+.|++++|.+
T Consensus       182 L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l  255 (466)
T 1o6v_A          182 LDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQI  255 (466)
T ss_dssp             EECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred             EECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCcc
Confidence            67788887754  347778888888888888875544  66788888888888888743  4577888899999998888


Q ss_pred             cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCcc
Q 038699           82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPAS  161 (237)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  161 (237)
                      .+..+  +..+++|++|++++|.+.+..+  +..+++|+.| ++++|.+++..+  +..+++|+.|++++|.+++..+  
T Consensus       256 ~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L-~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--  326 (466)
T 1o6v_A          256 SNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNL-ELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--  326 (466)
T ss_dssp             CCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEE-ECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--
T ss_pred             ccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeE-EcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--
Confidence            85543  7788899999999998875433  7788899999 999998875443  7788999999999999986554  


Q ss_pred             ccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCCcccccCCCCCCCCC
Q 038699          162 LSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCGKVQGLRPCNA  214 (237)
Q Consensus       162 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~l~~~~~~~~~C~~  214 (237)
                      +..+++|++|++++|++++. +....++.++.+++.+|. +.+.+| +..|..
T Consensus       327 ~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~  376 (466)
T 1o6v_A          327 VSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQ-ISDLTP-LANLTR  376 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSC-CCBCGG-GTTCTT
T ss_pred             hccCccCCEeECCCCccCCc-hhhccCCCCCEEeCCCCc-cCccch-hhcCCC
Confidence            67889999999999999854 666778889999998884 555554 344443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=1.3e-21  Score=152.03  Aligned_cols=170  Identities=15%  Similarity=0.194  Sum_probs=146.1

Q ss_pred             CEEecCCc-CCCCCCcccCCCCCCcEEEccC-CcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCC---EEE
Q 038699            1 MLGLAGNS-IGGKIPAEIGSLSQLVELHLSS-NQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLD---SLD   75 (237)
Q Consensus         1 ~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~---~L~   75 (237)
                      +|++++|+ ++.+.+..|..+++|++|++++ |.++...+..|..+++|++|++++|.+++ +|. +..+++|+   +|+
T Consensus        59 ~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~  136 (239)
T 2xwt_C           59 RIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILE  136 (239)
T ss_dssp             EEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEE
T ss_pred             EEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEE
Confidence            38999997 9888888899999999999998 99997777889999999999999999984 666 88899998   999


Q ss_pred             ccCC-cCcCcccccccCCCCCC-EEEccCCcccccCCccccCccCccccccCcCcc-cccccChhhcCC-CCCCeEeCcC
Q 038699           76 LSMN-RLSGPIPNQIGELRDLR-ILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNS-LTGEIPAQLGKL-TRLQSLNLSH  151 (237)
Q Consensus        76 l~~n-~i~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~-~~~~~~~~~~~~-~~L~~L~l~~  151 (237)
                      +++| .+.+..+..+..+++|+ +|++++|.+....+..+.. ++|+.| ++++|. ++...+..|..+ ++|+.|++++
T Consensus       137 l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L-~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~  214 (239)
T 2xwt_C          137 ITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAV-YLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ  214 (239)
T ss_dssp             EESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEE-ECTTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred             CCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEE-EcCCCCCcccCCHHHhhccccCCcEEECCC
Confidence            9999 88866666799999999 9999999998444444544 899999 999995 987778889999 9999999999


Q ss_pred             CcCcCccCccccCCCCCCEEEcCCCc
Q 038699          152 NNLSGEIPASLSSMLSLVAVNLSYNN  177 (237)
Q Consensus       152 n~l~~~~~~~~~~~~~L~~L~l~~n~  177 (237)
                      |.++. +|..  .+++|+.|+++++.
T Consensus       215 N~l~~-l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          215 TSVTA-LPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             CCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred             Ccccc-CChh--HhccCceeeccCcc
Confidence            99984 4443  67899999998864

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.86  E-value=1.5e-20  Score=142.96  Aligned_cols=173  Identities=24%  Similarity=0.235  Sum_probs=145.7

Q ss_pred             cEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCC
Q 038699           24 VELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQN  103 (237)
Q Consensus        24 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n  103 (237)
                      +.++.+++.++ .+|..+  .++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus        10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            57788888888 455433  468999999999999776677889999999999999999666667889999999999999


Q ss_pred             cccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCC
Q 038699          104 NLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLP  183 (237)
Q Consensus       104 ~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  183 (237)
                      .+++..+..+..+++|+.| ++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++.+..+
T Consensus        87 ~l~~~~~~~~~~l~~L~~L-~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  165 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKEL-ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  165 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEE-ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred             cCCccCHhHhcCccCCCEE-EcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence            9997777778999999999 999999997777778999999999999999997777778999999999999999886544


Q ss_pred             CCCccCCCccchhccCCcccccCC
Q 038699          184 DGSVFSSSQSSAFTNNKDLCGKVQ  207 (237)
Q Consensus       184 ~~~~~~~l~~~~l~~n~~l~~~~~  207 (237)
                            .++.+.+..| .+.|.+|
T Consensus       166 ------~l~~L~~~~n-~~~g~ip  182 (208)
T 2o6s_A          166 ------GIRYLSEWIN-KHSGVVR  182 (208)
T ss_dssp             ------TTHHHHHHHH-HCTTTBB
T ss_pred             ------CHHHHHHHHH-hCCceee
Confidence                  4566776666 3555544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.86  E-value=1.8e-20  Score=153.13  Aligned_cols=185  Identities=27%  Similarity=0.456  Sum_probs=77.6

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL   81 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i   81 (237)
                      |++++|+++...+  +..+++|++|++++|.+++ + ..+..+++|++|++++|.+++ .+. +..+++|++|++++|..
T Consensus        71 L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~  144 (347)
T 4fmz_A           71 LNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLNLGANHN  144 (347)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTT
T ss_pred             EEccCCccccchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCcccC-chh-hccCCceeEEECCCCCC
Confidence            4444444443322  4444444444444444442 1 134444455555555444442 121 33444444444444432


Q ss_pred             cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccC--------------------hhhcCC
Q 038699           82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIP--------------------AQLGKL  141 (237)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~--------------------~~~~~~  141 (237)
                      ....+ .+..+++|++|++++|.+.+..+  +..+++|+.| ++++|.+.+..+                    ..+..+
T Consensus       145 ~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L-~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  220 (347)
T 4fmz_A          145 LSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSL-SLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANM  220 (347)
T ss_dssp             CCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEE-ECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGC
T ss_pred             ccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEE-EccCCcccccccccCCCccceeecccCCCCCCchhhcC
Confidence            21111 23344444444444444332211  3444444444 444444432211                    003344


Q ss_pred             CCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccC
Q 038699          142 TRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNN  199 (237)
Q Consensus       142 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n  199 (237)
                      ++|+.|++++|.+++..+  +..+++|++|++++|.+++ ++....+++++.+++.+|
T Consensus       221 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n  275 (347)
T 4fmz_A          221 TRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-INAVKDLTKLKMLNVGSN  275 (347)
T ss_dssp             TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSS
T ss_pred             CcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-ChhHhcCCCcCEEEccCC
Confidence            444444444444442221  4444555555555555542 233344445555555544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.86  E-value=8.1e-21  Score=151.86  Aligned_cols=163  Identities=28%  Similarity=0.389  Sum_probs=86.5

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL   81 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i   81 (237)
                      |++++|+++..  +.+..+++|++|++++|.+++..+  +..+++|++|++++|.+++ + ..+..+++|++|++++|.+
T Consensus        51 L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i  124 (291)
T 1h6t_A           51 IIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLEHNGI  124 (291)
T ss_dssp             EECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEECTTSCC
T ss_pred             EEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEECCCCcC
Confidence            45555555543  124555555666666555553322  5555556666666555552 2 2255555566666665555


Q ss_pred             cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCcc
Q 038699           82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPAS  161 (237)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  161 (237)
                      .+.  ..+..+++|++|++++|.+.+.  ..+..+++|+.| ++++|.+++..+  +..+++|+.|++++|.+++ .+ .
T Consensus       125 ~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L-~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~  195 (291)
T 1h6t_A          125 SDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTL-SLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-A  195 (291)
T ss_dssp             CCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEE-ECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-G
T ss_pred             CCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEE-EccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-h
Confidence            532  2355555566666655555533  345555555555 555555553332  4555555666666555553 22 2


Q ss_pred             ccCCCCCCEEEcCCCcCc
Q 038699          162 LSSMLSLVAVNLSYNNLE  179 (237)
Q Consensus       162 ~~~~~~L~~L~l~~n~l~  179 (237)
                      +..+++|+.|++++|+++
T Consensus       196 l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          196 LAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             GTTCTTCSEEEEEEEEEE
T ss_pred             hccCCCCCEEECcCCccc
Confidence            555555666666655554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.86  E-value=2e-20  Score=144.55  Aligned_cols=157  Identities=27%  Similarity=0.322  Sum_probs=131.0

Q ss_pred             CCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEcc
Q 038699           22 QLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLS  101 (237)
Q Consensus        22 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~  101 (237)
                      .-+.++.+++.++ .+|..+.  ++|++|++++|.+++..+..|..+++|++|++++|.+....+..+..+++|++|+++
T Consensus        20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence            3567888888887 5554443  789999999999987778888889999999999999885555667889999999999


Q ss_pred             CCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCC
Q 038699          102 QNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGP  181 (237)
Q Consensus       102 ~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~  181 (237)
                      +|.++...+..+..+++|+.| ++++|.++ ..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|++.+.
T Consensus        97 ~N~l~~l~~~~~~~l~~L~~L-~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A           97 TNQLTVLPSAVFDRLVHLKEL-FMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEE-ECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             CCcCCccChhHhCcchhhCeE-eccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            999887766778889999999 99999998 6677788899999999999999876667788899999999999999866


Q ss_pred             CC
Q 038699          182 LP  183 (237)
Q Consensus       182 ~~  183 (237)
                      .+
T Consensus       175 c~  176 (229)
T 3e6j_A          175 CR  176 (229)
T ss_dssp             BG
T ss_pred             cc
Confidence            54

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=4.6e-21  Score=154.59  Aligned_cols=182  Identities=23%  Similarity=0.250  Sum_probs=149.9

Q ss_pred             CCCCcEEEccCCcCCCccCccc--cCCCCCCEEeccCCcccccCc----ccccCCCCCCEEEccCCcCcCcccccccCCC
Q 038699           20 LSQLVELHLSSNQLSGEIPAHI--GNLTELSTLSLNGNNISGQIP----EEIGGLLNLDSLDLSMNRLSGPIPNQIGELR   93 (237)
Q Consensus        20 l~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~   93 (237)
                      +++|++|++++|.+.+..|..+  ..+++|++|++++|.+++..+    ..+..+++|++|++++|.+.+..+..+..++
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            3569999999999998888887  889999999999999986444    3445789999999999999977778899999


Q ss_pred             CCCEEEccCCccccc----CCccccCccCccccccCcCcccccccCh---hhcCCCCCCeEeCcCCcCcCccCccccCC-
Q 038699           94 DLRILNLSQNNLIGT----IPFQIGNLVGLQDLQDLSYNSLTGEIPA---QLGKLTRLQSLNLSHNNLSGEIPASLSSM-  165 (237)
Q Consensus        94 ~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~~l~~n~~~~~~~~---~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-  165 (237)
                      +|++|++++|.+.+.    .+..+..+++|++| ++++|+++.....   .+..+++|++|++++|.+++..|..+..+ 
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L-~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~  248 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNL-ALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM  248 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSC-BCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEE-ECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence            999999999987542    13345788999999 9999999732221   35778999999999999997767777776 


Q ss_pred             --CCCCEEEcCCCcCcCCCCCCCccCCCccchhccCCccccc
Q 038699          166 --LSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCGK  205 (237)
Q Consensus       166 --~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~l~~~  205 (237)
                        ++|++|++++|+++ .+|... +++++.+++.+|. +.+.
T Consensus       249 ~~~~L~~L~Ls~N~l~-~lp~~~-~~~L~~L~Ls~N~-l~~~  287 (310)
T 4glp_A          249 WSSALNSLNLSFAGLE-QVPKGL-PAKLRVLDLSSNR-LNRA  287 (310)
T ss_dssp             CCTTCCCEECCSSCCC-SCCSCC-CSCCSCEECCSCC-CCSC
T ss_pred             CcCcCCEEECCCCCCC-chhhhh-cCCCCEEECCCCc-CCCC
Confidence              69999999999999 566543 4899999999884 5553

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.85  E-value=4.7e-21  Score=153.24  Aligned_cols=171  Identities=23%  Similarity=0.343  Sum_probs=148.4

Q ss_pred             cCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCC
Q 038699           17 IGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLR   96 (237)
Q Consensus        17 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~   96 (237)
                      +..+++|+.|++++|.+... + .+..+++|++|++++|.+++. +. +..+++|++|++++|.+.+ ++ .+..+++|+
T Consensus        42 ~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~  115 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLK  115 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCC
T ss_pred             hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCC
Confidence            34678999999999999844 4 488899999999999999954 44 8899999999999999985 34 489999999


Q ss_pred             EEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCC
Q 038699           97 ILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYN  176 (237)
Q Consensus        97 ~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n  176 (237)
                      +|++++|.+.+.  ..+..+++|+.| ++++|.+++.  ..+..+++|+.|++++|.+++..+  +..+++|++|++++|
T Consensus       116 ~L~L~~n~i~~~--~~l~~l~~L~~L-~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N  188 (291)
T 1h6t_A          116 SLSLEHNGISDI--NGLVHLPQLESL-YLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN  188 (291)
T ss_dssp             EEECTTSCCCCC--GGGGGCTTCCEE-ECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             EEECCCCcCCCC--hhhcCCCCCCEE-EccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC
Confidence            999999999854  468899999999 9999999855  578899999999999999996544  889999999999999


Q ss_pred             cCcCCCCCCCccCCCccchhccCCc
Q 038699          177 NLEGPLPDGSVFSSSQSSAFTNNKD  201 (237)
Q Consensus       177 ~l~~~~~~~~~~~~l~~~~l~~n~~  201 (237)
                      .+++ ++....++.+..+++.+|+.
T Consensus       189 ~i~~-l~~l~~l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          189 HISD-LRALAGLKNLDVLELFSQEC  212 (291)
T ss_dssp             CCCB-CGGGTTCTTCSEEEEEEEEE
T ss_pred             cCCC-ChhhccCCCCCEEECcCCcc
Confidence            9995 56677889999999999853

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.85  E-value=1.3e-20  Score=165.11  Aligned_cols=184  Identities=26%  Similarity=0.246  Sum_probs=144.7

Q ss_pred             CCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccC-cccccCCCCCCEEEccCCcCcCcccccccCCCCCCEE
Q 038699           20 LSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI-PEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRIL   98 (237)
Q Consensus        20 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L   98 (237)
                      +.+++.+++..+.+. ..+..+..+++|+.+++..+...... ...+..+.+++.++++.|.+....+..+..++.|+.|
T Consensus       396 ~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L  474 (635)
T 4g8a_A          396 TISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL  474 (635)
T ss_dssp             CSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred             hhhhhhhhccccccc-cccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhh
Confidence            334444444444333 23344556677777777766655332 3456778889999999999887777888889999999


Q ss_pred             EccCCccc-ccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCc
Q 038699           99 NLSQNNLI-GTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNN  177 (237)
Q Consensus        99 ~l~~n~~~-~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~  177 (237)
                      ++++|.+. ...|..+..+++|+.| ++++|++++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|+
T Consensus       475 ~Ls~N~~~~~~~~~~~~~l~~L~~L-~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~  553 (635)
T 4g8a_A          475 KMAGNSFQENFLPDIFTELRNLTFL-DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH  553 (635)
T ss_dssp             ECTTCEEGGGEECSCCTTCTTCCEE-ECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSC
T ss_pred             hhhhcccccccCchhhhhccccCEE-ECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCc
Confidence            99999754 4567889999999999 999999998889999999999999999999998888889999999999999999


Q ss_pred             CcCCCCCCC-cc-CCCccchhccCCccccc
Q 038699          178 LEGPLPDGS-VF-SSSQSSAFTNNKDLCGK  205 (237)
Q Consensus       178 l~~~~~~~~-~~-~~l~~~~l~~n~~l~~~  205 (237)
                      +++..|... .+ .+++.+++.+||+.|..
T Consensus       554 l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C  583 (635)
T 4g8a_A          554 IMTSKKQELQHFPSSLAFLNLTQNDFACTC  583 (635)
T ss_dssp             CCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred             CCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence            998877653 33 57899999999999853

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.85  E-value=6.3e-21  Score=156.97  Aligned_cols=178  Identities=27%  Similarity=0.248  Sum_probs=148.5

Q ss_pred             CcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCccccc-CCCCCCEEEccCCcCcCcccccccCCCCCCEEEcc
Q 038699           23 LVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIG-GLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLS  101 (237)
Q Consensus        23 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~  101 (237)
                      -+.++++++.++ .+|..+.  ..++.|++++|.+++..+..+. .+++|++|++++|.+.+..+..|..+++|++|+++
T Consensus        20 ~~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           20 SNILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TTEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            368999999998 5665443  4689999999999977777787 99999999999999997767789999999999999


Q ss_pred             CCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccc---cCCCCCCEEEcCCCcC
Q 038699          102 QNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASL---SSMLSLVAVNLSYNNL  178 (237)
Q Consensus       102 ~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~~~~L~~L~l~~n~l  178 (237)
                      +|.+....+..|..+++|+.| ++++|.+....+..|..+++|+.|++++|.++...+..+   ..+++|+.|++++|++
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L-~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l  175 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVL-LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL  175 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEE-ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred             CCcCCcCCHHHhCCCcCCCEE-ECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence            999997777789999999999 999999998889999999999999999999996555555   5689999999999999


Q ss_pred             cCCCCCC-CccCC--CccchhccCCcccc
Q 038699          179 EGPLPDG-SVFSS--SQSSAFTNNKDLCG  204 (237)
Q Consensus       179 ~~~~~~~-~~~~~--l~~~~l~~n~~l~~  204 (237)
                      ++..+.. ..++.  +..+++.+|++.|.
T Consensus       176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~C~  204 (361)
T 2xot_A          176 KKLPLTDLQKLPAWVKNGLYLHNNPLECD  204 (361)
T ss_dssp             CCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred             CccCHHHhhhccHhhcceEEecCCCccCC
Confidence            9544321 22333  35678888888774

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.85  E-value=4.1e-22  Score=162.17  Aligned_cols=196  Identities=17%  Similarity=0.181  Sum_probs=141.9

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCc-cCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCC-
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGE-IPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMN-   79 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-   79 (237)
                      |++++|.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++|++++|.+++..+..+..+++|++|++++| 
T Consensus        75 L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~  153 (336)
T 2ast_B           75 FRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS  153 (336)
T ss_dssp             EECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCB
T ss_pred             EEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCC
Confidence            67788888766655 45688888888888888754 6667788888888888888887777777888888888888888 


Q ss_pred             cCcC-cccccccCCCCCCEEEccCC-ccccc-CCccccCcc-CccccccCcCcc--cc-cccChhhcCCCCCCeEeCcCC
Q 038699           80 RLSG-PIPNQIGELRDLRILNLSQN-NLIGT-IPFQIGNLV-GLQDLQDLSYNS--LT-GEIPAQLGKLTRLQSLNLSHN  152 (237)
Q Consensus        80 ~i~~-~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~~~~l~-~L~~L~~l~~n~--~~-~~~~~~~~~~~~L~~L~l~~n  152 (237)
                      .+++ .++..+..+++|++|++++| .+++. .+..+..++ +|+.| ++++|.  ++ ...+..+..+++|+.|++++|
T Consensus       154 ~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L-~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~  232 (336)
T 2ast_B          154 GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL-NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS  232 (336)
T ss_dssp             SCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE-ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTC
T ss_pred             CCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE-EeCCCcccCCHHHHHHHHhhCCCCCEEeCCCC
Confidence            5654 24555777888888888888 77643 455677777 88888 888883  43 244556667788888888888


Q ss_pred             c-CcCccCccccCCCCCCEEEcCCCc-CcCC-CCCCCccCCCccchhccC
Q 038699          153 N-LSGEIPASLSSMLSLVAVNLSYNN-LEGP-LPDGSVFSSSQSSAFTNN  199 (237)
Q Consensus       153 ~-l~~~~~~~~~~~~~L~~L~l~~n~-l~~~-~~~~~~~~~l~~~~l~~n  199 (237)
                      . +++..+..+..+++|++|++++|. +... +.....+++++.+++.+|
T Consensus       233 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          233 VMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             TTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            7 666666777788888888888885 2211 112344666777776665

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.85  E-value=2.2e-20  Score=143.42  Aligned_cols=152  Identities=22%  Similarity=0.267  Sum_probs=135.8

Q ss_pred             CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccC-ccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCC
Q 038699            1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIP-AHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMN   79 (237)
Q Consensus         1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   79 (237)
                      ++++++|+++. +|..+.  ..+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus        15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            37899999986 455443  457899999999996644 55889999999999999999777778999999999999999


Q ss_pred             cCcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcC
Q 038699           80 RLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSG  156 (237)
Q Consensus        80 ~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~  156 (237)
                      .+++..+..+..+++|++|++++|.+.+..|..+..+++|+.| ++++|.+++..+..|..+++|+.|++++|.+..
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L-~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLL-SLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEE-ECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEE-ECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence            9997777889999999999999999998888999999999999 999999998889999999999999999999874

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.85  E-value=9.2e-21  Score=143.06  Aligned_cols=153  Identities=21%  Similarity=0.340  Sum_probs=102.1

Q ss_pred             CCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCE
Q 038699           18 GSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRI   97 (237)
Q Consensus        18 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~   97 (237)
                      ..+++|+.|++++|.+. .++ .+..+++|++|++++|.++ . +..+..+++|++|++++|.+++..+..+..+++|++
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            44567777777777777 444 4667777777777777654 2 235667777777777777777555666777777777


Q ss_pred             EEccCCcccccCCccccCccCccccccCcCcc-cccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCC
Q 038699           98 LNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNS-LTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYN  176 (237)
Q Consensus        98 L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n  176 (237)
                      |++++|.+++..+..+..+++|+.| ++++|. ++ ..+ .+..+++|+.|++++|.+++ .+ .+..+++|++|++++|
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L-~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSI-DLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEE-ECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEE-EccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCc
Confidence            7777777766556667777777777 777776 54 333 46667777777777777764 33 5666777777777777


Q ss_pred             cCc
Q 038699          177 NLE  179 (237)
Q Consensus       177 ~l~  179 (237)
                      ++.
T Consensus       192 ~i~  194 (197)
T 4ezg_A          192 TIG  194 (197)
T ss_dssp             ---
T ss_pred             ccC
Confidence            664

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.84  E-value=1.4e-19  Score=153.38  Aligned_cols=178  Identities=22%  Similarity=0.265  Sum_probs=99.3

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL   81 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i   81 (237)
                      |++++|.+++. | .+..+++|++|++++|.+++. +  +..+++|++|++++|.+++. +  +..+++|++|++++|.+
T Consensus        47 L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l  118 (457)
T 3bz5_A           47 LDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKL  118 (457)
T ss_dssp             EECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCC
T ss_pred             EEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcC
Confidence            66777777654 3 466677777777777776643 2  56666667777766666632 2  55666666666666666


Q ss_pred             cCcccccccCCCCCCEEEccCCcccccCC-------------------ccccCccCccccccCcCcccccccChhhcCCC
Q 038699           82 SGPIPNQIGELRDLRILNLSQNNLIGTIP-------------------FQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLT  142 (237)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-------------------~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~  142 (237)
                      ++ ++  +..+++|++|++++|.+++...                   -.+..+++|+.| ++++|.+++. +  +..++
T Consensus       119 ~~-l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L-~ls~n~l~~l-~--l~~l~  191 (457)
T 3bz5_A          119 TK-LD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTL-DCSFNKITEL-D--VSQNK  191 (457)
T ss_dssp             SC-CC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEE-ECCSSCCCCC-C--CTTCT
T ss_pred             Ce-ec--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEE-ECCCCcccee-c--cccCC
Confidence            53 22  5555556666665555543200                   023344455555 5555555432 2  44455


Q ss_pred             CCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccC
Q 038699          143 RLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNN  199 (237)
Q Consensus       143 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n  199 (237)
                      +|+.|++++|.+++.   .+..+++|++|++++|++++ +| ...++.++.+++.+|
T Consensus       192 ~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N  243 (457)
T 3bz5_A          192 LLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVN  243 (457)
T ss_dssp             TCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSS
T ss_pred             CCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCC
Confidence            555555555555532   24455666666666666654 33 344555555555555

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.84  E-value=1.4e-19  Score=153.25  Aligned_cols=172  Identities=22%  Similarity=0.199  Sum_probs=126.4

Q ss_pred             cCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccc
Q 038699            8 SIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPN   87 (237)
Q Consensus         8 ~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~   87 (237)
                      +.....+..+..+++|++|++++|.+++. | .+..+++|++|++++|.+++. +  +..+++|++|++++|.+++. + 
T Consensus        29 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~-  101 (457)
T 3bz5_A           29 EMQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D-  101 (457)
T ss_dssp             TCCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C-
T ss_pred             CcCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e-
Confidence            34455566778899999999999999954 5 689999999999999999954 3  88999999999999999954 3 


Q ss_pred             cccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCC---------------
Q 038699           88 QIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHN---------------  152 (237)
Q Consensus        88 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n---------------  152 (237)
                       +..+++|++|++++|.+++. +  +..+++|+.| ++++|.+++. +  +..+++|+.|++++|               
T Consensus       102 -~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L-~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~  173 (457)
T 3bz5_A          102 -VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYL-NCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLDVTPQTQLT  173 (457)
T ss_dssp             -CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEE-ECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCCCTTCTTCC
T ss_pred             -cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEE-ECCCCcccee-c--cccCCcCCEEECCCCCcccccccccCCcCC
Confidence             88999999999999999853 3  7888999999 9999988753 2  444555555555555               


Q ss_pred             -------cCcCccCccccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccC
Q 038699          153 -------NLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNN  199 (237)
Q Consensus       153 -------~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n  199 (237)
                             .+++ ++  +..+++|++|++++|++++.  ....++.++.+++.+|
T Consensus       174 ~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N  222 (457)
T 3bz5_A          174 TLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSN  222 (457)
T ss_dssp             EEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSS
T ss_pred             EEECCCCccce-ec--cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCC
Confidence                   4442 22  44445555555555555532  2334555666666665

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.84  E-value=7.8e-20  Score=141.18  Aligned_cols=151  Identities=25%  Similarity=0.263  Sum_probs=133.7

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL   81 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i   81 (237)
                      ++.++++++.+ |..+  .++|++|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|+.|++++|.+
T Consensus        24 v~c~~~~l~~i-p~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l  100 (229)
T 3e6j_A           24 VDCRSKRHASV-PAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL  100 (229)
T ss_dssp             EECTTSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             eEccCCCcCcc-CCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence            67788888744 4443  38899999999999988889999999999999999999866667789999999999999999


Q ss_pred             cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCc
Q 038699           82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGE  157 (237)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  157 (237)
                      ++..+..+..+++|++|++++|.+. .+|..+..+++|+.| ++++|.++...+..+..+++|+.|++++|.+...
T Consensus       101 ~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L-~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          101 TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHL-ALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEE-ECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             CccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEE-ECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            9776677899999999999999998 778889999999999 9999999977778899999999999999998743

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.84  E-value=3.1e-20  Score=152.19  Aligned_cols=176  Identities=19%  Similarity=0.129  Sum_probs=108.5

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCcc-CccccCCCCCCE-EeccCCcccccCcccccCCCCCCEEEccCC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEI-PAHIGNLTELST-LSLNGNNISGQIPEEIGGLLNLDSLDLSMN   79 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~-L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   79 (237)
                      |+|++|+|+.+.+.+|.++++|++|+|++|++.+.+ +.+|.+++++++ +.+.+|.++...++.|..+++|++|++++|
T Consensus        35 L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n  114 (350)
T 4ay9_X           35 LRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT  114 (350)
T ss_dssp             EEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEE
T ss_pred             EEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccccccc
Confidence            778888888766677888888888888888876544 356777777665 455667777666777888888888888888


Q ss_pred             cCcCcccccccCCCCCCEEEccC-CcccccCCccccCcc-CccccccCcCcccccccChhhcCCCCCCeEeCcC-CcCcC
Q 038699           80 RLSGPIPNQIGELRDLRILNLSQ-NNLIGTIPFQIGNLV-GLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSH-NNLSG  156 (237)
Q Consensus        80 ~i~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~-~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~-n~l~~  156 (237)
                      .+....+..+....++..+++.+ +.+....+..+..+. .++.| ++++|+++...+..| ...+|+.+++.+ |.++.
T Consensus       115 ~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L-~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~  192 (350)
T 4ay9_X          115 GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL-WLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEE  192 (350)
T ss_dssp             CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEE-ECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCC
T ss_pred             ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhh-ccccccccCCChhhc-cccchhHHhhccCCcccC
Confidence            87744333444444455555533 233323333344433 35555 666666664333333 234566666653 45553


Q ss_pred             ccCccccCCCCCCEEEcCCCcCc
Q 038699          157 EIPASLSSMLSLVAVNLSYNNLE  179 (237)
Q Consensus       157 ~~~~~~~~~~~L~~L~l~~n~l~  179 (237)
                      ..++.|..+++|++|++++|+++
T Consensus       193 i~~~~f~~l~~L~~LdLs~N~l~  215 (350)
T 4ay9_X          193 LPNDVFHGASGPVILDISRTRIH  215 (350)
T ss_dssp             CCTTTTTTEECCSEEECTTSCCC
T ss_pred             CCHHHhccCcccchhhcCCCCcC
Confidence            33445566666666666666665

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.83  E-value=9.8e-20  Score=158.85  Aligned_cols=166  Identities=28%  Similarity=0.364  Sum_probs=134.3

Q ss_pred             CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699            1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR   80 (237)
Q Consensus         1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   80 (237)
                      .|++++|.+....  .+..+++|+.|+|++|.+.+..+  +..+++|+.|+|++|.+++ ++ .+..+++|+.|++++|.
T Consensus        47 ~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~  120 (605)
T 1m9s_A           47 QIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNG  120 (605)
T ss_dssp             CCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSC
T ss_pred             EEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCC
Confidence            3678888887543  47888999999999998885544  7888999999999998874 33 67888999999999998


Q ss_pred             CcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCc
Q 038699           81 LSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPA  160 (237)
Q Consensus        81 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  160 (237)
                      +.+.  ..+..+++|+.|++++|.+.+.  ..+..+++|+.| ++++|.+.+..+  +..+++|+.|++++|.+++.  .
T Consensus       121 l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L-~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~  191 (605)
T 1m9s_A          121 ISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTL-SLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--R  191 (605)
T ss_dssp             CCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEE-ECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--G
T ss_pred             CCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEE-ECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--h
Confidence            8853  4578889999999999988754  578888899999 999998886555  78888999999999988853  4


Q ss_pred             cccCCCCCCEEEcCCCcCcCC
Q 038699          161 SLSSMLSLVAVNLSYNNLEGP  181 (237)
Q Consensus       161 ~~~~~~~L~~L~l~~n~l~~~  181 (237)
                      .+..+++|+.|++++|++++.
T Consensus       192 ~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          192 ALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             GGTTCTTCSEEECCSEEEECC
T ss_pred             HHccCCCCCEEEccCCcCcCC
Confidence            578889999999999988753

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.83  E-value=1.6e-21  Score=158.75  Aligned_cols=203  Identities=19%  Similarity=0.206  Sum_probs=161.8

Q ss_pred             CEEecCCcCCCC-CCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCC-ccccc-CcccccCCCCCCEEEcc
Q 038699            1 MLGLAGNSIGGK-IPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGN-NISGQ-IPEEIGGLLNLDSLDLS   77 (237)
Q Consensus         1 ~L~l~~n~~~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~   77 (237)
                      +|++++|.++.. .+..+..+++|++|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|+++
T Consensus        97 ~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~  176 (336)
T 2ast_B           97 HMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS  176 (336)
T ss_dssp             EEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECC
T ss_pred             EEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCC
Confidence            388999998865 7777899999999999999999888888999999999999999 67742 56668889999999999


Q ss_pred             CC-cCcCc-ccccccCCC-CCCEEEccCCc--cc-ccCCccccCccCccccccCcCcc-cccccChhhcCCCCCCeEeCc
Q 038699           78 MN-RLSGP-IPNQIGELR-DLRILNLSQNN--LI-GTIPFQIGNLVGLQDLQDLSYNS-LTGEIPAQLGKLTRLQSLNLS  150 (237)
Q Consensus        78 ~n-~i~~~-~~~~~~~l~-~L~~L~l~~n~--~~-~~~~~~~~~l~~L~~L~~l~~n~-~~~~~~~~~~~~~~L~~L~l~  150 (237)
                      +| .+++. ++..+..++ +|++|++++|.  ++ ...+..+..+++|+.| ++++|. +++..+..+..+++|+.|+++
T Consensus       177 ~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L-~l~~~~~l~~~~~~~l~~l~~L~~L~l~  255 (336)
T 2ast_B          177 WCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL-DLSDSVMLKNDCFQEFFQLNYLQHLSLS  255 (336)
T ss_dssp             CCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEE-ECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred             CCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEE-eCCCCCcCCHHHHHHHhCCCCCCEeeCC
Confidence            99 88753 566788899 99999999994  54 3456677889999999 999999 776777788999999999999


Q ss_pred             CCc-CcCccCccccCCCCCCEEEcCCCcCcCCCCCCCcc-CCCccchhccCCcccccCCC
Q 038699          151 HNN-LSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVF-SSSQSSAFTNNKDLCGKVQG  208 (237)
Q Consensus       151 ~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-~~l~~~~l~~n~~l~~~~~~  208 (237)
                      +|. +++.....+..+++|++|++++| ++..  ....+ ..+..+.+.+| .+.+..|.
T Consensus       256 ~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~--~~~~l~~~l~~L~l~~n-~l~~~~~~  311 (336)
T 2ast_B          256 RCYDIIPETLLELGEIPTLKTLQVFGI-VPDG--TLQLLKEALPHLQINCS-HFTTIARP  311 (336)
T ss_dssp             TCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT--CHHHHHHHSTTSEESCC-CSCCTTCS
T ss_pred             CCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH--HHHHHHhhCcceEEecc-cCccccCC
Confidence            994 44443446888999999999999 3311  11122 33666666555 56666665

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.83  E-value=3.2e-20  Score=146.31  Aligned_cols=164  Identities=23%  Similarity=0.297  Sum_probs=138.1

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL   81 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i   81 (237)
                      ++++++.++...  .+..+++|+.|++++|.++. ++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.+
T Consensus        24 l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l   97 (263)
T 1xeu_A           24 QNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRL   97 (263)
T ss_dssp             HHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCC
T ss_pred             HHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCcc
Confidence            456778887554  57788999999999999984 45 688999999999999999854 44 88999999999999999


Q ss_pred             cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCcc
Q 038699           82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPAS  161 (237)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  161 (237)
                      .+ ++. +.. ++|++|++++|.+++.  ..+..+++|+.| ++++|++++. + .+..+++|+.|++++|.+++.  ..
T Consensus        98 ~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L-~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~  167 (263)
T 1xeu_A           98 KN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEIL-SIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GG  167 (263)
T ss_dssp             SC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEE-ECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TT
T ss_pred             CC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEE-ECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HH
Confidence            85 443 333 8999999999999853  368899999999 9999999854 3 688899999999999999865  67


Q ss_pred             ccCCCCCCEEEcCCCcCcCC
Q 038699          162 LSSMLSLVAVNLSYNNLEGP  181 (237)
Q Consensus       162 ~~~~~~L~~L~l~~n~l~~~  181 (237)
                      +..+++|+.|++++|+++..
T Consensus       168 l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          168 LTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             STTCCCCCEEEEEEEEEECC
T ss_pred             hccCCCCCEEeCCCCcccCC
Confidence            88999999999999999855

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.83  E-value=2.8e-20  Score=162.30  Aligned_cols=181  Identities=24%  Similarity=0.369  Sum_probs=153.9

Q ss_pred             ecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcC
Q 038699            4 LAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSG   83 (237)
Q Consensus         4 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~   83 (237)
                      +..+.+....+  +..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|.+++..+  +..+++|+.|++++|.+.+
T Consensus        28 l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~  101 (605)
T 1m9s_A           28 LKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD  101 (605)
T ss_dssp             TTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred             ccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC
Confidence            44455554433  4567899999999999984 44 58899999999999999985443  8899999999999999984


Q ss_pred             cccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCcccc
Q 038699           84 PIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLS  163 (237)
Q Consensus        84 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  163 (237)
                       ++ .+..+++|++|++++|.+.+.  ..+..+++|+.| ++++|.+.+.  ..+..+++|+.|++++|.+++..|  +.
T Consensus       102 -l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L-~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~  172 (605)
T 1m9s_A          102 -LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESL-YLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LA  172 (605)
T ss_dssp             -CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEE-ECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GT
T ss_pred             -Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEE-ECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hc
Confidence             34 688999999999999999853  468899999999 9999999855  678899999999999999996555  88


Q ss_pred             CCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCC
Q 038699          164 SMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNK  200 (237)
Q Consensus       164 ~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~  200 (237)
                      .+++|+.|+|++|++++ ++....++++..+++.+|+
T Consensus       173 ~l~~L~~L~Ls~N~i~~-l~~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          173 GLTKLQNLYLSKNHISD-LRALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             TCTTCCEEECCSSCCCB-CGGGTTCTTCSEEECCSEE
T ss_pred             cCCCCCEEECcCCCCCC-ChHHccCCCCCEEEccCCc
Confidence            99999999999999995 5777788999999999885

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.82  E-value=6.9e-22  Score=162.73  Aligned_cols=197  Identities=23%  Similarity=0.288  Sum_probs=95.5

Q ss_pred             EEecCCcCCCCCC----cccCCCC-CCcEEEccCCcCCCccCccccCC-----CCCCEEeccCCcccccCccc----ccC
Q 038699            2 LGLAGNSIGGKIP----AEIGSLS-QLVELHLSSNQLSGEIPAHIGNL-----TELSTLSLNGNNISGQIPEE----IGG   67 (237)
Q Consensus         2 L~l~~n~~~~~~~----~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~----~~~   67 (237)
                      |||++|.++...+    ..|..++ +|++|++++|.+++..+..+..+     ++|++|++++|.+++..+..    +..
T Consensus        27 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~  106 (362)
T 3goz_A           27 LDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAA  106 (362)
T ss_dssp             EECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHT
T ss_pred             EEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHh
Confidence            4555555554444    4444455 55555555555554434333332     55555555555555433332    222


Q ss_pred             C-CCCCEEEccCCcCcCcccccc----cC-CCCCCEEEccCCcccccC----CccccCcc-CccccccCcCcccccccCh
Q 038699           68 L-LNLDSLDLSMNRLSGPIPNQI----GE-LRDLRILNLSQNNLIGTI----PFQIGNLV-GLQDLQDLSYNSLTGEIPA  136 (237)
Q Consensus        68 l-~~L~~L~l~~n~i~~~~~~~~----~~-l~~L~~L~l~~n~~~~~~----~~~~~~l~-~L~~L~~l~~n~~~~~~~~  136 (237)
                      + ++|++|++++|.+++..+..+    .. .++|++|++++|.+.+..    +..+..++ +|+.| ++++|.+++..+.
T Consensus       107 ~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L-~Ls~n~l~~~~~~  185 (362)
T 3goz_A          107 IPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL-NLRGNNLASKNCA  185 (362)
T ss_dssp             SCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE-ECTTSCGGGSCHH
T ss_pred             CCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEe-eecCCCCchhhHH
Confidence            2 455555555555553333222    22 235566666665555322    22223333 56666 6666666544432


Q ss_pred             h----hcCC-CCCCeEeCcCCcCcCc----cCccccC-CCCCCEEEcCCCcCcCCCC-----CCCccCCCccchhccC
Q 038699          137 Q----LGKL-TRLQSLNLSHNNLSGE----IPASLSS-MLSLVAVNLSYNNLEGPLP-----DGSVFSSSQSSAFTNN  199 (237)
Q Consensus       137 ~----~~~~-~~L~~L~l~~n~l~~~----~~~~~~~-~~~L~~L~l~~n~l~~~~~-----~~~~~~~l~~~~l~~n  199 (237)
                      .    +... ++|+.|++++|.+++.    ++..+.. .++|++|++++|++++..+     .....+.++.+++.+|
T Consensus       186 ~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n  263 (362)
T 3goz_A          186 ELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD  263 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred             HHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccC
Confidence            2    2233 3666666666666542    2333333 3466666666666654322     1133455666666655

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.82  E-value=7.4e-22  Score=163.83  Aligned_cols=130  Identities=23%  Similarity=0.265  Sum_probs=63.1

Q ss_pred             CCCCEEEccCCcCc-Cccc---ccccCCCCCCEEEccCCcccc-----cCCccccCccCccccccCcCcccc----cccC
Q 038699           69 LNLDSLDLSMNRLS-GPIP---NQIGELRDLRILNLSQNNLIG-----TIPFQIGNLVGLQDLQDLSYNSLT----GEIP  135 (237)
Q Consensus        69 ~~L~~L~l~~n~i~-~~~~---~~~~~l~~L~~L~l~~n~~~~-----~~~~~~~~l~~L~~L~~l~~n~~~----~~~~  135 (237)
                      ++|++|++++|.++ ..++   ..+..+++|++|++++|.+..     ..+..+..+++|+.| ++++|.++    ...+
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L-~Ls~n~l~~~g~~~l~  237 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVL-DLQDNTFTHLGSSALA  237 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEE-ECCSSCCHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEE-ECcCCCCCcHHHHHHH
Confidence            44555555555443 1122   233345555555555555441     122244555555555 55555553    2334


Q ss_pred             hhhcCCCCCCeEeCcCCcCcCc----cCccccC--CCCCCEEEcCCCcCcC----CCCCC--CccCCCccchhccC
Q 038699          136 AQLGKLTRLQSLNLSHNNLSGE----IPASLSS--MLSLVAVNLSYNNLEG----PLPDG--SVFSSSQSSAFTNN  199 (237)
Q Consensus       136 ~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~--~~~L~~L~l~~n~l~~----~~~~~--~~~~~l~~~~l~~n  199 (237)
                      ..+..+++|+.|++++|.+++.    ++..+..  +++|++|++++|.+++    .+|..  ..++.++.+++.+|
T Consensus       238 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N  313 (386)
T 2ca6_A          238 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN  313 (386)
T ss_dssp             HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             HHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence            4455555566666666655532    2333322  5566666666666554    23322  12455556665555

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.82  E-value=1.9e-21  Score=160.13  Aligned_cols=198  Identities=24%  Similarity=0.217  Sum_probs=124.0

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccC----ccccCCC-CCCEEeccCCcccccCcccccCC-----CCC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIP----AHIGNLT-ELSTLSLNGNNISGQIPEEIGGL-----LNL   71 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l-----~~L   71 (237)
                      +++++|++++.+|..+...++|++|++++|.+++..+    ..|..++ +|++|++++|.+++..+..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            5677777777766666666667777777777775544    5666676 77777777777776555555543     777


Q ss_pred             CEEEccCCcCcCccccc----ccCC-CCCCEEEccCCcccccCCcccc----C-ccCccccccCcCcccccccCh----h
Q 038699           72 DSLDLSMNRLSGPIPNQ----IGEL-RDLRILNLSQNNLIGTIPFQIG----N-LVGLQDLQDLSYNSLTGEIPA----Q  137 (237)
Q Consensus        72 ~~L~l~~n~i~~~~~~~----~~~l-~~L~~L~l~~n~~~~~~~~~~~----~-l~~L~~L~~l~~n~~~~~~~~----~  137 (237)
                      ++|++++|.+++..+..    +..+ ++|++|++++|.+++..+..+.    . ..+|+.| ++++|.+++....    .
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L-~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL-NLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEE-ECTTSCGGGSCHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEE-EccCCcCCHHHHHHHHHH
Confidence            77777777776544443    3334 6777777777777655443332    2 2477777 7777777643332    2


Q ss_pred             hcCCC-CCCeEeCcCCcCcCccCcc----ccCC-CCCCEEEcCCCcCcCCC----CC-CCc-cCCCccchhccCC
Q 038699          138 LGKLT-RLQSLNLSHNNLSGEIPAS----LSSM-LSLVAVNLSYNNLEGPL----PD-GSV-FSSSQSSAFTNNK  200 (237)
Q Consensus       138 ~~~~~-~L~~L~l~~n~l~~~~~~~----~~~~-~~L~~L~l~~n~l~~~~----~~-~~~-~~~l~~~~l~~n~  200 (237)
                      +...+ +|++|++++|.+++..+..    +..+ ++|++|++++|.++...    +. ... .+.++.+++.+|.
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  236 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC  236 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence            34444 7777777777776554433    3334 47777777777776421    11 111 2367777777763

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.82  E-value=6.8e-20  Score=137.76  Aligned_cols=112  Identities=28%  Similarity=0.333  Sum_probs=56.6

Q ss_pred             CCCEEEccCCcCcCcccc-cccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEe
Q 038699           70 NLDSLDLSMNRLSGPIPN-QIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLN  148 (237)
Q Consensus        70 ~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~  148 (237)
                      ++++|++++|.+.+..+. .+..+++|++|++++|.+++..|..+..+++|+.| ++++|.+++..+..|..+++|+.|+
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L-~Ls~N~l~~~~~~~~~~l~~L~~L~  108 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL-QLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE-ECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEE-ECCCCcCCccCHHHhcCCCCCCEEE
Confidence            444444444444432222 24444445555555554444444444555555555 5555555544444455555555555


Q ss_pred             CcCCcCcCccCccccCCCCCCEEEcCCCcCcCCC
Q 038699          149 LSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPL  182 (237)
Q Consensus       149 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~  182 (237)
                      +++|.+++..|..+..+++|++|++++|++++..
T Consensus       109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  142 (192)
T 1w8a_A          109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             CCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence            5555555544555555556666666666655433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.82  E-value=1.6e-19  Score=136.19  Aligned_cols=147  Identities=19%  Similarity=0.347  Sum_probs=126.3

Q ss_pred             CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699            1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR   80 (237)
Q Consensus         1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   80 (237)
                      +|++++|+++. ++ .+..+++|++|++++|.++. . ..+..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus        48 ~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~~-~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~  123 (197)
T 4ezg_A           48 YITLANINVTD-LT-GIEYAHNIKDLTINNIHATN-Y-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA  123 (197)
T ss_dssp             EEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCSC-C-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSB
T ss_pred             EEeccCCCccC-hH-HHhcCCCCCEEEccCCCCCc-c-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCc
Confidence            37899999984 44 68899999999999997763 3 468899999999999999997788889999999999999999


Q ss_pred             CcCcccccccCCCCCCEEEccCCc-ccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcC
Q 038699           81 LSGPIPNQIGELRDLRILNLSQNN-LIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSG  156 (237)
Q Consensus        81 i~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~  156 (237)
                      +++..+..+..+++|++|++++|. +. ..+ .+..+++|+.| ++++|.+++. + .+..+++|+.|++++|.+.+
T Consensus       124 i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L-~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          124 HDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSL-NIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEE-ECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred             cCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEE-ECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence            997778889999999999999998 65 444 68999999999 9999999853 3 67889999999999999863

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=5.3e-19  Score=152.93  Aligned_cols=175  Identities=23%  Similarity=0.305  Sum_probs=138.8

Q ss_pred             CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699            1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR   80 (237)
Q Consensus         1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   80 (237)
                      +|++++|++++ +|..+  .++|+.|++++|.++ .+|   ..+++|++|++++|.+++ +|. +..  +|+.|++++|.
T Consensus        63 ~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~  131 (571)
T 3cvr_A           63 ELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQ  131 (571)
T ss_dssp             EEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSC
T ss_pred             EEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCc
Confidence            38899999987 55544  378999999999999 566   457899999999999985 666 555  99999999999


Q ss_pred             CcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCc
Q 038699           81 LSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPA  160 (237)
Q Consensus        81 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  160 (237)
                      +++ +|.   .+++|+.|++++|.+++ +|.   .+++|+.| ++++|.+++ +|. +.  ++|+.|++++|.|+ .+|.
T Consensus       132 l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L-~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~  197 (571)
T 3cvr_A          132 LTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVL-SVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA  197 (571)
T ss_dssp             CSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEE-ECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC
T ss_pred             CCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEE-ECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh
Confidence            985 565   68899999999999985 554   57889999 999999985 555 54  89999999999998 5665


Q ss_pred             cccCCCCC-------CEEEcCCCcCcCCCCCCCccCCCccchhccCCccc
Q 038699          161 SLSSMLSL-------VAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLC  203 (237)
Q Consensus       161 ~~~~~~~L-------~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~l~  203 (237)
                       +..  +|       +.|++++|+++...+....++.+..+++.+|+.-+
T Consensus       198 -~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          198 -VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             -CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred             -HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence             544  77       99999999999544445668889999999886433

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.81  E-value=1.7e-21  Score=161.58  Aligned_cols=199  Identities=21%  Similarity=0.220  Sum_probs=146.8

Q ss_pred             CEEecCCcCCCCCC----cccCCCCCCcEEEccCCcCC---CccCccc-------cCCCCCCEEeccCCcccc----cCc
Q 038699            1 MLGLAGNSIGGKIP----AEIGSLSQLVELHLSSNQLS---GEIPAHI-------GNLTELSTLSLNGNNISG----QIP   62 (237)
Q Consensus         1 ~L~l~~n~~~~~~~----~~~~~l~~L~~L~L~~n~i~---~~~~~~~-------~~l~~L~~L~l~~n~l~~----~~~   62 (237)
                      +|+|++|+++...+    ..+..+++|++|++++|.+.   +.+|..+       ..+++|++|++++|.+++    .++
T Consensus        36 ~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~  115 (386)
T 2ca6_A           36 EIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLI  115 (386)
T ss_dssp             EEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHH
T ss_pred             EEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHH
Confidence            37888888886533    44778889999999886443   3334333       678899999999998885    356


Q ss_pred             ccccCCCCCCEEEccCCcCcCccccc----ccCC---------CCCCEEEccCCcccc-cCC---ccccCccCccccccC
Q 038699           63 EEIGGLLNLDSLDLSMNRLSGPIPNQ----IGEL---------RDLRILNLSQNNLIG-TIP---FQIGNLVGLQDLQDL  125 (237)
Q Consensus        63 ~~~~~l~~L~~L~l~~n~i~~~~~~~----~~~l---------~~L~~L~l~~n~~~~-~~~---~~~~~l~~L~~L~~l  125 (237)
                      ..+..+++|++|++++|.+....+..    +..+         ++|++|++++|.++. ..+   ..+..+++|+.| ++
T Consensus       116 ~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L-~L  194 (386)
T 2ca6_A          116 DFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV-KM  194 (386)
T ss_dssp             HHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEE-EC
T ss_pred             HHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEE-EC
Confidence            67788889999999999886433332    3334         889999999998862 333   356678889999 99


Q ss_pred             cCccccc-----ccChhhcCCCCCCeEeCcCCcCc----CccCccccCCCCCCEEEcCCCcCcCC----CCCC---CccC
Q 038699          126 SYNSLTG-----EIPAQLGKLTRLQSLNLSHNNLS----GEIPASLSSMLSLVAVNLSYNNLEGP----LPDG---SVFS  189 (237)
Q Consensus       126 ~~n~~~~-----~~~~~~~~~~~L~~L~l~~n~l~----~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~---~~~~  189 (237)
                      ++|.+..     ..+..+..+++|+.|++++|.++    ..++..+..+++|++|++++|.+++.    ++..   ...+
T Consensus       195 ~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~  274 (386)
T 2ca6_A          195 VQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENI  274 (386)
T ss_dssp             CSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSC
T ss_pred             cCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCC
Confidence            9998863     23336778899999999999985    35677888899999999999998754    2222   2367


Q ss_pred             CCccchhccCC
Q 038699          190 SSQSSAFTNNK  200 (237)
Q Consensus       190 ~l~~~~l~~n~  200 (237)
                      +++.+++.+|.
T Consensus       275 ~L~~L~L~~n~  285 (386)
T 2ca6_A          275 GLQTLRLQYNE  285 (386)
T ss_dssp             CCCEEECCSSC
T ss_pred             CeEEEECcCCc
Confidence            78888888874

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.78  E-value=6e-19  Score=139.00  Aligned_cols=170  Identities=22%  Similarity=0.258  Sum_probs=142.7

Q ss_pred             CCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEE
Q 038699           19 SLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRIL   98 (237)
Q Consensus        19 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L   98 (237)
                      .+.+++.++++++.+++..  .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+.+..+  +..+++|++|
T Consensus        17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L   90 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL   90 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred             HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence            3456777889999998544  5788999999999999998 455 68899999999999999995544  8999999999


Q ss_pred             EccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcC
Q 038699           99 NLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL  178 (237)
Q Consensus        99 ~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l  178 (237)
                      ++++|.+.+. +. +.. ++|+.| ++++|.+++.  ..+..+++|+.|++++|.+++. + .+..+++|++|++++|++
T Consensus        91 ~L~~N~l~~l-~~-~~~-~~L~~L-~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i  162 (263)
T 1xeu_A           91 SVNRNRLKNL-NG-IPS-ACLSRL-FLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEI  162 (263)
T ss_dssp             ECCSSCCSCC-TT-CCC-SSCCEE-ECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCC
T ss_pred             ECCCCccCCc-Cc-ccc-CcccEE-EccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcC
Confidence            9999999853 33 233 899999 9999999854  3588999999999999999854 3 688999999999999999


Q ss_pred             cCCCCCCCccCCCccchhccCCccc
Q 038699          179 EGPLPDGSVFSSSQSSAFTNNKDLC  203 (237)
Q Consensus       179 ~~~~~~~~~~~~l~~~~l~~n~~l~  203 (237)
                      ++. +....++.++.+++.+|+..+
T Consensus       163 ~~~-~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          163 TNT-GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             CBC-TTSTTCCCCCEEEEEEEEEEC
T ss_pred             cch-HHhccCCCCCEEeCCCCcccC
Confidence            966 667788899999999986443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.78  E-value=9.2e-19  Score=131.55  Aligned_cols=129  Identities=27%  Similarity=0.362  Sum_probs=83.6

Q ss_pred             cEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcc-cccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccC
Q 038699           24 VELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPE-EIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQ  102 (237)
Q Consensus        24 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~  102 (237)
                      +.++++++.++ .+|..+.  .++++|++++|.+++..+. .+..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            45666666665 4444332  2666666666666644333 356666777777777776655566666677777777777


Q ss_pred             CcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcC
Q 038699          103 NNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSG  156 (237)
Q Consensus       103 n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~  156 (237)
                      |.+.+..+..+..+++|+.| ++++|.+++..+..+..+++|+.|++++|.++.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L-~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTL-NLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEE-ECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             CcCCccCHHHhcCCCCCCEE-ECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            77666666666667777777 777777766666667777777777777777664

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.78  E-value=1.9e-18  Score=149.42  Aligned_cols=158  Identities=25%  Similarity=0.369  Sum_probs=132.2

Q ss_pred             CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699            1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR   80 (237)
Q Consensus         1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   80 (237)
                      +|+|++|+++ .+|   ..+++|+.|++++|.+++ +|. +..  +|++|++++|.+++ +|.   .+++|+.|++++|.
T Consensus        84 ~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~  151 (571)
T 3cvr_A           84 VLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQ  151 (571)
T ss_dssp             EEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSC
T ss_pred             EEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCc
Confidence            4899999999 455   457999999999999996 666 655  99999999999995 665   68999999999999


Q ss_pred             CcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCC-------CeEeCcCCc
Q 038699           81 LSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRL-------QSLNLSHNN  153 (237)
Q Consensus        81 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L-------~~L~l~~n~  153 (237)
                      +++ +|.   .+++|++|++++|.+++ +|. +.  ++|+.| ++++|.++ .+|. +..  +|       +.|++++|.
T Consensus       152 l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L-~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~  218 (571)
T 3cvr_A          152 LTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEAL-DVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENR  218 (571)
T ss_dssp             CSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEE-ECCSSCCS-SCCC-CC----------CCEEEECCSSC
T ss_pred             cCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEE-ECcCCCCC-chhh-HHH--hhhcccccceEEecCCCc
Confidence            995 564   67899999999999985 565 55  899999 99999998 5555 543  67       999999999


Q ss_pred             CcCccCccccCCCCCCEEEcCCCcCcCCCCC
Q 038699          154 LSGEIPASLSSMLSLVAVNLSYNNLEGPLPD  184 (237)
Q Consensus       154 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  184 (237)
                      |+ .+|..+..+++|+.|++++|++++.+|.
T Consensus       219 l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~  248 (571)
T 3cvr_A          219 IT-HIPENILSLDPTCTIILEDNPLSSRIRE  248 (571)
T ss_dssp             CC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred             ce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence            99 6788888899999999999999876554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.77  E-value=1.3e-17  Score=145.88  Aligned_cols=75  Identities=27%  Similarity=0.300  Sum_probs=44.0

Q ss_pred             cCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchh
Q 038699          117 VGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAF  196 (237)
Q Consensus       117 ~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l  196 (237)
                      ++|+.| ++++|.+++ .+   ..+++|+.|++++|.++ .+|.   .+++|++|++++|+++..++....++++..+++
T Consensus       221 ~~L~~L-~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L  291 (622)
T 3g06_A          221 SGLKEL-IVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNL  291 (622)
T ss_dssp             TTCCEE-ECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEEC
T ss_pred             CCCCEE-EccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEe
Confidence            445555 555555552 22   23456666666666666 3333   456677777777777733333455666777777


Q ss_pred             ccCC
Q 038699          197 TNNK  200 (237)
Q Consensus       197 ~~n~  200 (237)
                      .+|+
T Consensus       292 ~~N~  295 (622)
T 3g06_A          292 EGNP  295 (622)
T ss_dssp             CSCC
T ss_pred             cCCC
Confidence            7775

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.76  E-value=2.6e-18  Score=129.20  Aligned_cols=128  Identities=22%  Similarity=0.336  Sum_probs=80.9

Q ss_pred             CEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcC
Q 038699           48 STLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSY  127 (237)
Q Consensus        48 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~  127 (237)
                      +.++++++.++ .+|..+.  ++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..|..+++|+.| ++++
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L-~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTL-ILSY   87 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE-ECCS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEE-ECCC
Confidence            34555555555 3343322  35666666666665 444556666666666666666665555556666666666 6666


Q ss_pred             cccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcC
Q 038699          128 NSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEG  180 (237)
Q Consensus       128 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  180 (237)
                      |.++...+..|..+++|+.|++++|.++...+..|..+++|+.|++++|++.+
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            66665666667777777777777777775555567777788888888887764

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.76  E-value=2.6e-17  Score=143.87  Aligned_cols=51  Identities=29%  Similarity=0.278  Sum_probs=26.7

Q ss_pred             CCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccC
Q 038699          142 TRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNN  199 (237)
Q Consensus       142 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n  199 (237)
                      ++|+.|++++|.+++ +|   ..+++|++|++++|.++ .+|.  .++++..+++.+|
T Consensus       221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~--~~~~L~~L~Ls~N  271 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM--LPSGLLSLSVYRN  271 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC--CCTTCCEEECCSS
T ss_pred             CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc--ccccCcEEeCCCC
Confidence            445555555555542 23   23455666666666665 3333  3455666666655

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.76  E-value=4.3e-18  Score=125.01  Aligned_cols=132  Identities=23%  Similarity=0.264  Sum_probs=68.7

Q ss_pred             CCCCEEeccCCccc-ccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccc
Q 038699           45 TELSTLSLNGNNIS-GQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQ  123 (237)
Q Consensus        45 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  123 (237)
                      ++|++|++++|.++ +.+|..+..+++|+.|++++|.+.+.  ..+..+++|++|++++|.+.+..|..+..+++|+.| 
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L-  100 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL-  100 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE-
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE-
Confidence            34455555555444 33344444445555555555554432  344445555555555555544344444445555555 


Q ss_pred             cCcCccccccc-ChhhcCCCCCCeEeCcCCcCcCccC---ccccCCCCCCEEEcCCCcCc
Q 038699          124 DLSYNSLTGEI-PAQLGKLTRLQSLNLSHNNLSGEIP---ASLSSMLSLVAVNLSYNNLE  179 (237)
Q Consensus       124 ~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~~~~L~~L~l~~n~l~  179 (237)
                      ++++|.+++.. +..+..+++|+.|++++|.+++..+   ..+..+++|++|++++|.+.
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            55555554321 1445556666666666666663333   35666666777777666665

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.76  E-value=3.9e-17  Score=138.22  Aligned_cols=119  Identities=25%  Similarity=0.374  Sum_probs=48.5

Q ss_pred             CCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEcc
Q 038699           22 QLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLS  101 (237)
Q Consensus        22 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~  101 (237)
                      +|++|++++|.+++ +| .|..+++|++|++++|.+++ +|..   ..+|++|++++|.+++ +| .++.+++|++|+++
T Consensus       132 ~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~  203 (454)
T 1jl5_A          132 LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYAD  203 (454)
T ss_dssp             TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred             CCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECC
Confidence            34444444444442 23 24444444444444444442 2221   1244444444444442 22 24444444444444


Q ss_pred             CCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCc
Q 038699          102 QNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLS  155 (237)
Q Consensus       102 ~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  155 (237)
                      +|.+.+ .|..   .++|+.| ++++|.++ ..| .+..+++|+.|++++|.++
T Consensus       204 ~N~l~~-l~~~---~~~L~~L-~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~  250 (454)
T 1jl5_A          204 NNSLKK-LPDL---PLSLESI-VAGNNILE-ELP-ELQNLPFLTTIYADNNLLK  250 (454)
T ss_dssp             SSCCSS-CCCC---CTTCCEE-ECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS
T ss_pred             CCcCCc-CCCC---cCcccEE-ECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC
Confidence            444432 1211   1234444 44444444 222 2444444555555544444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.76  E-value=5.3e-18  Score=138.93  Aligned_cols=198  Identities=18%  Similarity=0.159  Sum_probs=153.4

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccC-cccccCCCCCCE-EEccCC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI-PEEIGGLLNLDS-LDLSMN   79 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~-L~l~~n   79 (237)
                      ++.++++++. +|..+  .+++++|+|++|+|+...+++|.++++|++|+|++|.+.+.+ +..|.+++++++ +.+..|
T Consensus        14 v~C~~~~Lt~-iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N   90 (350)
T 4ay9_X           14 FLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   90 (350)
T ss_dssp             EEEESTTCCS-CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred             EEecCCCCCc-cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence            5677888884 45544  367999999999999666678999999999999999986544 457888998776 566778


Q ss_pred             cCcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcC-cccccccChhhcCCC-CCCeEeCcCCcCcCc
Q 038699           80 RLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSY-NSLTGEIPAQLGKLT-RLQSLNLSHNNLSGE  157 (237)
Q Consensus        80 ~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~-n~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~  157 (237)
                      .+....+..|..+++|++|++++|.+....+..+....++..+ ++.+ +.+....+..|..+. .++.|++++|.|+. 
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l-~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-  168 (350)
T 4ay9_X           91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL-DIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-  168 (350)
T ss_dssp             TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEE-EEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-
T ss_pred             cccccCchhhhhccccccccccccccccCCchhhcccchhhhh-hhccccccccccccchhhcchhhhhhccccccccC-
Confidence            9987777889999999999999999986666666677777788 7755 567766666777765 68899999999995 


Q ss_pred             cCccccCCCCCCEEEcCC-CcCcCCCCCC--CccCCCccchhccCCcccccC
Q 038699          158 IPASLSSMLSLVAVNLSY-NNLEGPLPDG--SVFSSSQSSAFTNNKDLCGKV  206 (237)
Q Consensus       158 ~~~~~~~~~~L~~L~l~~-n~l~~~~~~~--~~~~~l~~~~l~~n~~l~~~~  206 (237)
                      ++.......+|+++++++ |.++ .+|..  ..+++++.+++++|. +...+
T Consensus       169 i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~-l~~lp  218 (350)
T 4ay9_X          169 IHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTR-IHSLP  218 (350)
T ss_dssp             ECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSC-CCCCC
T ss_pred             CChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCC-cCccC
Confidence            444444567899999985 6666 55542  567889999999884 55443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.76  E-value=3.2e-18  Score=125.70  Aligned_cols=137  Identities=26%  Similarity=0.258  Sum_probs=113.7

Q ss_pred             CCCCcEEEccCCcCC-CccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEE
Q 038699           20 LSQLVELHLSSNQLS-GEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRIL   98 (237)
Q Consensus        20 l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L   98 (237)
                      .++|++|++++|.+. +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            477999999999987 56777788899999999999998854  778889999999999999987677777789999999


Q ss_pred             EccCCcccccC-CccccCccCccccccCcCcccccccC---hhhcCCCCCCeEeCcCCcCcCccCc
Q 038699           99 NLSQNNLIGTI-PFQIGNLVGLQDLQDLSYNSLTGEIP---AQLGKLTRLQSLNLSHNNLSGEIPA  160 (237)
Q Consensus        99 ~l~~n~~~~~~-~~~~~~l~~L~~L~~l~~n~~~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~  160 (237)
                      ++++|.+.+.. +..+..+++|+.| ++++|.+.+..+   ..+..+++|+.|++++|.+. ..|+
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L-~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSL-DLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEE-ECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred             eccCCccCcchhHHHHhcCCCCCEE-EeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence            99999987542 2678889999999 999999985555   47888999999999999887 4443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.76  E-value=3.2e-17  Score=138.73  Aligned_cols=136  Identities=25%  Similarity=0.373  Sum_probs=93.2

Q ss_pred             CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699            1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR   80 (237)
Q Consensus         1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   80 (237)
                      +|++++|++++ +| .|..+++|++|++++|.+++ +|..   ..+|++|++++|.+++ +| .+..+++|++|++++|.
T Consensus       135 ~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~  206 (454)
T 1jl5_A          135 YLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNS  206 (454)
T ss_dssp             EEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSC
T ss_pred             EEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCc
Confidence            37889999986 55 58999999999999999884 5543   3588888998888884 55 57788888888888888


Q ss_pred             CcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCc
Q 038699           81 LSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLS  155 (237)
Q Consensus        81 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  155 (237)
                      +.+ +|..   .++|++|++++|.+. .+| .+..+++|+.| ++++|++++ .+.   .+++|+.|++++|.++
T Consensus       207 l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L-~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~  270 (454)
T 1jl5_A          207 LKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTI-YADNNLLKT-LPD---LPPSLEALNVRDNYLT  270 (454)
T ss_dssp             CSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEE-ECCSSCCSS-CCS---CCTTCCEEECCSSCCS
T ss_pred             CCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEE-ECCCCcCCc-ccc---cccccCEEECCCCccc
Confidence            774 3332   246777777777666 444 36666677777 777766653 222   1244555555555544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.75  E-value=5.6e-21  Score=165.67  Aligned_cols=160  Identities=25%  Similarity=0.232  Sum_probs=95.7

Q ss_pred             CCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCc-------------ccccCcccccCCC---------------
Q 038699           18 GSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNN-------------ISGQIPEEIGGLL---------------   69 (237)
Q Consensus        18 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-------------l~~~~~~~~~~l~---------------   69 (237)
                      ..+++|+.|+|++|.++ .+|..+..+++|+.|++++|.             ..+..|..+..++               
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~  424 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD  424 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence            34566666666666665 556566666666666655443             1222232332222               


Q ss_pred             -----------------CCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCccccc
Q 038699           70 -----------------NLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTG  132 (237)
Q Consensus        70 -----------------~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~  132 (237)
                                       .|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..++.+++|+.| ++++|.+++
T Consensus       425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L-~Ls~N~l~~  500 (567)
T 1dce_A          425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVL-QASDNALEN  500 (567)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEE-ECCSSCCCC
T ss_pred             hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEE-ECCCCCCCC
Confidence                             46666666666663 444 666666666666666666 556666666666666 666666663


Q ss_pred             ccChhhcCCCCCCeEeCcCCcCcCcc-CccccCCCCCCEEEcCCCcCcCCCCC
Q 038699          133 EIPAQLGKLTRLQSLNLSHNNLSGEI-PASLSSMLSLVAVNLSYNNLEGPLPD  184 (237)
Q Consensus       133 ~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~  184 (237)
                       +| .+..+++|+.|++++|.+++.. |..+..+++|+.|++++|++++.+|.
T Consensus       501 -lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          501 -VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             -CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred             -Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence             34 5666666666666666666544 66666666666666666666655443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.74  E-value=3.1e-20  Score=157.24  Aligned_cols=81  Identities=19%  Similarity=0.233  Sum_probs=40.8

Q ss_pred             EEecCCcCCCCC----CcccCCCCCCcEEEccCCcCCCccCcccc-----CCCCCCEEeccCCccccc----CcccccCC
Q 038699            2 LGLAGNSIGGKI----PAEIGSLSQLVELHLSSNQLSGEIPAHIG-----NLTELSTLSLNGNNISGQ----IPEEIGGL   68 (237)
Q Consensus         2 L~l~~n~~~~~~----~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-----~l~~L~~L~l~~n~l~~~----~~~~~~~l   68 (237)
                      |++++|+++...    +..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+++.    ++..+..+
T Consensus       147 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~  226 (461)
T 1z7x_W          147 LQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASK  226 (461)
T ss_dssp             EECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHC
T ss_pred             EECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhC
Confidence            566666666533    33444556666666666665533222221     234555555555555432    23344444


Q ss_pred             CCCCEEEccCCcCc
Q 038699           69 LNLDSLDLSMNRLS   82 (237)
Q Consensus        69 ~~L~~L~l~~n~i~   82 (237)
                      ++|++|++++|.+.
T Consensus       227 ~~L~~L~Ls~n~l~  240 (461)
T 1z7x_W          227 ASLRELALGSNKLG  240 (461)
T ss_dssp             TTCCEEECCSSBCH
T ss_pred             CCccEEeccCCcCC
Confidence            55555555555443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.73  E-value=1.4e-19  Score=153.14  Aligned_cols=197  Identities=19%  Similarity=0.142  Sum_probs=101.0

Q ss_pred             EEecCCcCCCCCCcccC-----CCCCCcEEEccCCcCCCc----cCccccCCCCCCEEeccCCcccccC-----cccccC
Q 038699            2 LGLAGNSIGGKIPAEIG-----SLSQLVELHLSSNQLSGE----IPAHIGNLTELSTLSLNGNNISGQI-----PEEIGG   67 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~-----~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~   67 (237)
                      |++++|.++...+..+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|.+++..     +..+..
T Consensus       175 L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~  254 (461)
T 1z7x_W          175 LTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHP  254 (461)
T ss_dssp             EECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTST
T ss_pred             EECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcC
Confidence            56666666544333332     244666666666666642    3444555666666666666655321     112224


Q ss_pred             CCCCCEEEccCCcCcCc----ccccccCCCCCCEEEccCCcccccCCccccC-----ccCccccccCcCcccccc----c
Q 038699           68 LLNLDSLDLSMNRLSGP----IPNQIGELRDLRILNLSQNNLIGTIPFQIGN-----LVGLQDLQDLSYNSLTGE----I  134 (237)
Q Consensus        68 l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-----l~~L~~L~~l~~n~~~~~----~  134 (237)
                      +++|++|++++|.+++.    ++..+..+++|++|++++|.+.+..+..+..     .++|+.| ++++|.+++.    .
T Consensus       255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L-~L~~n~l~~~~~~~l  333 (461)
T 1z7x_W          255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL-WVKSCSFTAACCSHF  333 (461)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE-ECTTSCCBGGGHHHH
T ss_pred             CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceee-EcCCCCCchHHHHHH
Confidence            56666666666666532    3444555666666666666654332222221     1455666 6666655533    2


Q ss_pred             ChhhcCCCCCCeEeCcCCcCcCccCccccC-----CCCCCEEEcCCCcCcC----CCCC-CCccCCCccchhccC
Q 038699          135 PAQLGKLTRLQSLNLSHNNLSGEIPASLSS-----MLSLVAVNLSYNNLEG----PLPD-GSVFSSSQSSAFTNN  199 (237)
Q Consensus       135 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-----~~~L~~L~l~~n~l~~----~~~~-~~~~~~l~~~~l~~n  199 (237)
                      +..+..+++|+.|++++|.+++..+..+..     .++|++|++++|++++    .++. ....++++.+++.+|
T Consensus       334 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N  408 (461)
T 1z7x_W          334 SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN  408 (461)
T ss_dssp             HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred             HHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCC
Confidence            333444556666666666555433332221     4456666666665552    2222 123455555555555

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.73  E-value=1e-17  Score=120.55  Aligned_cols=108  Identities=28%  Similarity=0.316  Sum_probs=59.3

Q ss_pred             CCCcEEEccCCcCC-CccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEE
Q 038699           21 SQLVELHLSSNQLS-GEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILN   99 (237)
Q Consensus        21 ~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~   99 (237)
                      ++++.|++++|.+. +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            45666666666665 44555556666666666666666533  4455566666666666666544555555556666666


Q ss_pred             ccCCccccc-CCccccCccCccccccCcCcccc
Q 038699          100 LSQNNLIGT-IPFQIGNLVGLQDLQDLSYNSLT  131 (237)
Q Consensus       100 l~~n~~~~~-~~~~~~~l~~L~~L~~l~~n~~~  131 (237)
                      +++|.+++. .+..+..+++|+.| ++++|.++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L-~l~~N~l~  126 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSL-DLFNCEVT  126 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEE-ECTTCGGG
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEE-eCcCCccc
Confidence            666555432 12334444444444 44444444

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.73  E-value=8.7e-18  Score=120.94  Aligned_cols=129  Identities=20%  Similarity=0.224  Sum_probs=100.9

Q ss_pred             CCCCCEEeccCCccc-ccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCccccCccCcccc
Q 038699           44 LTELSTLSLNGNNIS-GQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDL  122 (237)
Q Consensus        44 l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  122 (237)
                      .++|+.|++++|.++ +.+|..+..+++|+.|++++|.+.+.  ..+..+++|++|++++|.+.+..|..+..+++|+.|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            367888899888887 56777778888888888888888854  667788888888888888886677777778888888


Q ss_pred             ccCcCcccccc-cChhhcCCCCCCeEeCcCCcCcCccC---ccccCCCCCCEEEcCC
Q 038699          123 QDLSYNSLTGE-IPAQLGKLTRLQSLNLSHNNLSGEIP---ASLSSMLSLVAVNLSY  175 (237)
Q Consensus       123 ~~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~~~~L~~L~l~~  175 (237)
                       ++++|.+++. .+..+..+++|+.|++++|.+++..+   ..+..+++|++|++++
T Consensus        94 -~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           94 -NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             -ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             -ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence             8888888753 23667788888888888888875544   4677788888888753

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.72  E-value=7.4e-17  Score=119.44  Aligned_cols=133  Identities=25%  Similarity=0.273  Sum_probs=85.6

Q ss_pred             CEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcC
Q 038699           48 STLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSY  127 (237)
Q Consensus        48 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~  127 (237)
                      +.++++++.++ .+|..+  .++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.| ++++
T Consensus        10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~l~~   85 (177)
T 2o6r_A           10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTIL-YLHE   85 (177)
T ss_dssp             TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE-ECCS
T ss_pred             CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEE-ECCC
Confidence            44555555555 333322  2456666666666654444445666666666666666664444556666677777 7777


Q ss_pred             cccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCC
Q 038699          128 NSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPD  184 (237)
Q Consensus       128 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  184 (237)
                      |.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++.+..+.
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  142 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  142 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCcc
Confidence            777655555667777888888888888755555667788888888888888765553

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.72  E-value=1.2e-18  Score=155.23  Aligned_cols=119  Identities=28%  Similarity=0.342  Sum_probs=59.9

Q ss_pred             CccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCccccCcc
Q 038699           38 PAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLV  117 (237)
Q Consensus        38 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~  117 (237)
                      +..|..++.|+.|+|++|.+. .++..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..+..++
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~  293 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF  293 (727)
T ss_dssp             -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred             hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence            444555555555555555555 34444445555555555555555 44555555555555555555555 4455555555


Q ss_pred             CccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCcc
Q 038699          118 GLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPAS  161 (237)
Q Consensus       118 ~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  161 (237)
                      +|+.| ++++|.++ .+|..|..+++|+.|++++|.+++..|..
T Consensus       294 ~L~~L-~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~  335 (727)
T 4b8c_D          294 QLKYF-YFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKI  335 (727)
T ss_dssp             TCSEE-ECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHH
T ss_pred             CCCEE-ECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHH
Confidence            55555 55555554 33444555555555555555555444433

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.72  E-value=9.1e-17  Score=120.71  Aligned_cols=127  Identities=27%  Similarity=0.348  Sum_probs=94.7

Q ss_pred             cEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCC
Q 038699           24 VELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQN  103 (237)
Q Consensus        24 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n  103 (237)
                      +.++++++.++ .+|..+.  ++|++|++++|.++ .+|..|..+++|+.|++++|.+++..+..|..+++|++|++++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            46777777777 4454332  47778888888777 56677777788888888888877666667777888888888888


Q ss_pred             cccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCc
Q 038699          104 NLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLS  155 (237)
Q Consensus       104 ~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  155 (237)
                      .++...+..|..+++|+.| ++++|.++...+..|..+++|+.|++++|.+.
T Consensus        89 ~l~~i~~~~f~~l~~L~~L-~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLL-SLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEE-ECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ccCEeCHHHhCCCCCCCEE-ECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            8776666677778888888 88888887666666777888888888888775

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.71  E-value=3.6e-18  Score=152.19  Aligned_cols=154  Identities=29%  Similarity=0.350  Sum_probs=119.8

Q ss_pred             CCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccC
Q 038699           12 KIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGE   91 (237)
Q Consensus        12 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~   91 (237)
                      ..+..|..++.|+.|+|++|.+. .++..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..+..
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~  291 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS  291 (727)
T ss_dssp             -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred             cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence            45777899999999999999999 66766779999999999999999 88999999999999999999999 77989999


Q ss_pred             CCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCC-CCeEeCcCCcCcCccCccccCCCCCCE
Q 038699           92 LRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTR-LQSLNLSHNNLSGEIPASLSSMLSLVA  170 (237)
Q Consensus        92 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~L~~  170 (237)
                      +++|++|++++|.+. .+|..+..+++|+.| ++++|.+.+..+..+..... ...+++++|.+++..|.      .|+.
T Consensus       292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L-~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~  363 (727)
T 4b8c_D          292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFL-GVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRF  363 (727)
T ss_dssp             GTTCSEEECCSSCCC-CCCSSTTSCTTCCCE-ECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---
T ss_pred             CCCCCEEECCCCCCC-ccChhhhcCCCccEE-eCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccce
Confidence            999999999999997 778889999999999 99999999877777654321 23467888888765553      4555


Q ss_pred             EEcCCC
Q 038699          171 VNLSYN  176 (237)
Q Consensus       171 L~l~~n  176 (237)
                      |+++.|
T Consensus       364 l~l~~n  369 (727)
T 4b8c_D          364 IEINTD  369 (727)
T ss_dssp             ------
T ss_pred             eEeecc
Confidence            666666

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.70  E-value=3.3e-16  Score=115.90  Aligned_cols=131  Identities=25%  Similarity=0.288  Sum_probs=88.5

Q ss_pred             CcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccC
Q 038699           23 LVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQ  102 (237)
Q Consensus        23 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~  102 (237)
                      .+.++++++.++ .+|..+  .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            356667777666 334322  25677777777777755555566777777777777777755455566777777777777


Q ss_pred             CcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCc
Q 038699          103 NNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGE  157 (237)
Q Consensus       103 n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  157 (237)
                      |.+++..+..+..+++|+.| ++++|.+++..+..+..+++|+.|++++|.+...
T Consensus        86 N~l~~~~~~~~~~l~~L~~L-~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKEL-ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEE-ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCccccCHHHhhCCcccCEE-ECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            77775555566777777777 7777777755555567777788888888877643

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.67  E-value=1.6e-16  Score=117.59  Aligned_cols=110  Identities=22%  Similarity=0.203  Sum_probs=57.0

Q ss_pred             cCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCC
Q 038699           17 IGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLR   96 (237)
Q Consensus        17 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~   96 (237)
                      +..+.+|++|++++|.++. ++......++|++|++++|.+++.  ..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus        15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            4455666666666666663 333222223666666666666533  4555566666666666666533223335556666


Q ss_pred             EEEccCCcccccCCc--cccCccCccccccCcCcccc
Q 038699           97 ILNLSQNNLIGTIPF--QIGNLVGLQDLQDLSYNSLT  131 (237)
Q Consensus        97 ~L~l~~n~~~~~~~~--~~~~l~~L~~L~~l~~n~~~  131 (237)
                      +|++++|.+. ..|.  .+..+++|+.| ++++|.+.
T Consensus        92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L-~l~~N~i~  126 (176)
T 1a9n_A           92 ELILTNNSLV-ELGDLDPLASLKSLTYL-CILRNPVT  126 (176)
T ss_dssp             EEECCSCCCC-CGGGGGGGGGCTTCCEE-ECCSSGGG
T ss_pred             EEECCCCcCC-cchhhHhhhcCCCCCEE-EecCCCCC
Confidence            6666666554 2222  34444444444 44444443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.67  E-value=2.1e-16  Score=128.31  Aligned_cols=179  Identities=14%  Similarity=0.084  Sum_probs=141.9

Q ss_pred             CEEecCCcCC--------------------CCCCcccCC--------CCCCcEEEccCCcCCCccCccccCCCCCCEEec
Q 038699            1 MLGLAGNSIG--------------------GKIPAEIGS--------LSQLVELHLSSNQLSGEIPAHIGNLTELSTLSL   52 (237)
Q Consensus         1 ~L~l~~n~~~--------------------~~~~~~~~~--------l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l   52 (237)
                      +|||++|++.                    .+...+|.+        |++|+.++|.+ .++.....+|.++++|+.+++
T Consensus        53 ~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l  131 (329)
T 3sb4_A           53 VLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQI  131 (329)
T ss_dssp             EEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEB
T ss_pred             EEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEc
Confidence            3788888887                    344556778        99999999999 888777888999999999999


Q ss_pred             cCCcccccCcccccCCCCCCEEEccCCcC----cCcccccc---------------------------------------
Q 038699           53 NGNNISGQIPEEIGGLLNLDSLDLSMNRL----SGPIPNQI---------------------------------------   89 (237)
Q Consensus        53 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~i----~~~~~~~~---------------------------------------   89 (237)
                      ++|.+....+..|..+.++..+....+..    .......|                                       
T Consensus       132 ~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~  211 (329)
T 3sb4_A          132 RKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEG  211 (329)
T ss_dssp             CCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEE
T ss_pred             CCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEee
Confidence            99988767778888877777776554211    00000000                                       


Q ss_pred             -----------cCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCC-eEeCcCCcCcCc
Q 038699           90 -----------GELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQ-SLNLSHNNLSGE  157 (237)
Q Consensus        90 -----------~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~-~L~l~~n~l~~~  157 (237)
                                 ..+++|+.+++++|.++.....+|..+.+|+.+ ++..| ++.+...+|.++.+|+ .+++.+ .++..
T Consensus       212 ~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l-~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I  288 (329)
T 3sb4_A          212 KLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI-KLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAI  288 (329)
T ss_dssp             CCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE-ECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEE
T ss_pred             eecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE-ECCcc-cceehHHHhhCChhccEEEEEcc-cceEE
Confidence                       127899999999999987777889999999999 99998 7778889999999999 999988 77767


Q ss_pred             cCccccCCCCCCEEEcCCCcCcCCCC
Q 038699          158 IPASLSSMLSLVAVNLSYNNLEGPLP  183 (237)
Q Consensus       158 ~~~~~~~~~~L~~L~l~~n~l~~~~~  183 (237)
                      .+.+|.++++|+++++++|.++...+
T Consensus       289 ~~~aF~~c~~L~~l~l~~n~i~~I~~  314 (329)
T 3sb4_A          289 EFGAFMGCDNLRYVLATGDKITTLGD  314 (329)
T ss_dssp             CTTTTTTCTTEEEEEECSSCCCEECT
T ss_pred             chhhhhCCccCCEEEeCCCccCccch
Confidence            78999999999999999999984443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.67  E-value=2.3e-16  Score=116.67  Aligned_cols=133  Identities=23%  Similarity=0.257  Sum_probs=112.4

Q ss_pred             cccCCCCCCEEeccCCcccccCcccccCC-CCCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCccccCccC
Q 038699           40 HIGNLTELSTLSLNGNNISGQIPEEIGGL-LNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVG  118 (237)
Q Consensus        40 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~  118 (237)
                      .+..+.+|++|++++|.++ .++. +..+ ++|+.|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            4677889999999999998 4554 4444 4999999999999854  67889999999999999998665555689999


Q ss_pred             ccccccCcCcccccccCh--hhcCCCCCCeEeCcCCcCcCccCc----cccCCCCCCEEEcCCCcCc
Q 038699          119 LQDLQDLSYNSLTGEIPA--QLGKLTRLQSLNLSHNNLSGEIPA----SLSSMLSLVAVNLSYNNLE  179 (237)
Q Consensus       119 L~~L~~l~~n~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~----~~~~~~~L~~L~l~~n~l~  179 (237)
                      |+.| ++++|.+. ..+.  .+..+++|+.|++++|.++ ..|.    .+..+++|+.||+++|.+.
T Consensus        90 L~~L-~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           90 LTEL-ILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CCEE-ECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCEE-ECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            9999 99999997 4444  7888999999999999998 4565    4889999999999999876

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.66  E-value=6.1e-19  Score=152.88  Aligned_cols=159  Identities=20%  Similarity=0.215  Sum_probs=131.3

Q ss_pred             cCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc-------------CcCcccccccC-----------------
Q 038699           42 GNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR-------------LSGPIPNQIGE-----------------   91 (237)
Q Consensus        42 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------------i~~~~~~~~~~-----------------   91 (237)
                      ..+++|+.|++++|.++ .+|..++.+++|++|++++|.             ..+..|..+..                 
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~  424 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD  424 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence            56789999999999998 789999999999999987664             22222221111                 


Q ss_pred             ---------------CCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcC
Q 038699           92 ---------------LRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSG  156 (237)
Q Consensus        92 ---------------l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~  156 (237)
                                     ...|+.|++++|.+++ +|. +..+++|+.| ++++|.++ .+|..+..+++|+.|++++|.+++
T Consensus       425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L-~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~  500 (567)
T 1dce_A          425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHL-DLSHNRLR-ALPPALAALRCLEVLQASDNALEN  500 (567)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEE-ECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred             hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEe-ecCccccc-ccchhhhcCCCCCEEECCCCCCCC
Confidence                           1258899999999985 565 9999999999 99999999 778899999999999999999995


Q ss_pred             ccCccccCCCCCCEEEcCCCcCcCCC-C-CCCccCCCccchhccCCcccccCCC
Q 038699          157 EIPASLSSMLSLVAVNLSYNNLEGPL-P-DGSVFSSSQSSAFTNNKDLCGKVQG  208 (237)
Q Consensus       157 ~~~~~~~~~~~L~~L~l~~n~l~~~~-~-~~~~~~~l~~~~l~~n~~l~~~~~~  208 (237)
                       +| .+..+++|++|++++|++++.. | ....++.+..+++.+|+ +++.++.
T Consensus       501 -lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~  551 (567)
T 1dce_A          501 -VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGI  551 (567)
T ss_dssp             -CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSC
T ss_pred             -Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccH
Confidence             56 8899999999999999999874 4 55678999999999984 7776654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.62  E-value=1.3e-18  Score=131.28  Aligned_cols=152  Identities=26%  Similarity=0.322  Sum_probs=99.2

Q ss_pred             CCCCcEEEccCCcCCCccCc------cccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCC
Q 038699           20 LSQLVELHLSSNQLSGEIPA------HIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELR   93 (237)
Q Consensus        20 l~~L~~L~L~~n~i~~~~~~------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~   93 (237)
                      ...++.++++.+.+.+..|.      .+..+++|++|++++|.+++ +| .+..+++|+.|++++|.+. .+|..+..++
T Consensus        17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~   93 (198)
T 1ds9_A           17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD   93 (198)
T ss_dssp             TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred             cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence            34455555555555544443      67777777777777777774 45 6667777777777777777 5565566667


Q ss_pred             CCCEEEccCCcccccCCccccCccCccccccCcCcccccccC-hhhcCCCCCCeEeCcCCcCcCccCc----------cc
Q 038699           94 DLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIP-AQLGKLTRLQSLNLSHNNLSGEIPA----------SL  162 (237)
Q Consensus        94 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~----------~~  162 (237)
                      +|++|++++|.+.+ .| .+..+++|+.| ++++|.+++... ..+..+++|+.|++++|.+++..|.          .+
T Consensus        94 ~L~~L~L~~N~l~~-l~-~~~~l~~L~~L-~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~  170 (198)
T 1ds9_A           94 TLEELWISYNQIAS-LS-GIEKLVNLRVL-YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV  170 (198)
T ss_dssp             HCSEEEEEEEECCC-HH-HHHHHHHSSEE-EESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred             cCCEEECcCCcCCc-CC-ccccCCCCCEE-ECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence            77777777777764 33 46667777777 777777764332 3566777777777777777644332          25


Q ss_pred             cCCCCCCEEEcCCCcCc
Q 038699          163 SSMLSLVAVNLSYNNLE  179 (237)
Q Consensus       163 ~~~~~L~~L~l~~n~l~  179 (237)
                      ..+++|+.||  +|+++
T Consensus       171 ~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          171 KRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHCSSCSEEC--CGGGT
T ss_pred             HhCCCcEEEC--CcccC
Confidence            6677777776  56555

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.59  E-value=6.9e-15  Score=119.34  Aligned_cols=193  Identities=15%  Similarity=0.070  Sum_probs=142.9

Q ss_pred             CCCCcEEEccCCcCC--------------------CccCccccC--------CCCCCEEeccCCcccccCcccccCCCCC
Q 038699           20 LSQLVELHLSSNQLS--------------------GEIPAHIGN--------LTELSTLSLNGNNISGQIPEEIGGLLNL   71 (237)
Q Consensus        20 l~~L~~L~L~~n~i~--------------------~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~~~~l~~L   71 (237)
                      +++|+.|+|++|++.                    .....+|.+        +++|+.+++.+ .++.....+|..+++|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L  126 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL  126 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence            788999999999988                    234466778        99999999999 8887777889999999


Q ss_pred             CEEEccCCcCcCcccccccCCCCCCEEEccCCcc----cccCCccc----------------------------------
Q 038699           72 DSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNL----IGTIPFQI----------------------------------  113 (237)
Q Consensus        72 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~----~~~~~~~~----------------------------------  113 (237)
                      +.+++..|.+....+.+|..+.++..+....+..    .......|                                  
T Consensus       127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~  206 (329)
T 3sb4_A          127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF  206 (329)
T ss_dssp             CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred             ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence            9999999998766667888877777777655221    00000000                                  


Q ss_pred             ----------------cCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCC-EEEcCCC
Q 038699          114 ----------------GNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLV-AVNLSYN  176 (237)
Q Consensus       114 ----------------~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~-~L~l~~n  176 (237)
                                      ..+++|+.+ ++..|.++.+...+|.++.+|+.+++.+| ++.....+|.++++|+ .+++.+ 
T Consensus       207 l~~~~~l~~~~~~~l~~~~~~L~~l-~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-  283 (329)
T 3sb4_A          207 LTIEGKLDNADFKLIRDYMPNLVSL-DISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-  283 (329)
T ss_dssp             EEEEECCCHHHHHHHHHHCTTCCEE-ECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-
T ss_pred             EEEeeeecHHHHHHHHHhcCCCeEE-ECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-
Confidence                            026789999 99999999888899999999999999998 7767788999999999 999998 


Q ss_pred             cCcCCCCCC-CccCCCccchhccCCcccccCCCCCCCCCCc
Q 038699          177 NLEGPLPDG-SVFSSSQSSAFTNNKDLCGKVQGLRPCNALS  216 (237)
Q Consensus       177 ~l~~~~~~~-~~~~~l~~~~l~~n~~l~~~~~~~~~C~~~~  216 (237)
                      .++...+.. .....++.+.+.+|..-.-....+..|..+.
T Consensus       284 ~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~  324 (329)
T 3sb4_A          284 SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSK  324 (329)
T ss_dssp             TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCC
T ss_pred             cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchh
Confidence            666333332 3346688888766643222222345666543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.58  E-value=6.2e-18  Score=127.58  Aligned_cols=147  Identities=25%  Similarity=0.314  Sum_probs=123.6

Q ss_pred             EEecCCcCCCCCCc------ccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEE
Q 038699            2 LGLAGNSIGGKIPA------EIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLD   75 (237)
Q Consensus         2 L~l~~n~~~~~~~~------~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   75 (237)
                      ++++++.+.+..|.      .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|+.|+
T Consensus        23 l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~   99 (198)
T 1ds9_A           23 TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELW   99 (198)
T ss_dssp             TTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEE
T ss_pred             cchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEE
Confidence            46777788877776      88899999999999999995 66 7889999999999999998 6787787889999999


Q ss_pred             ccCCcCcCcccccccCCCCCCEEEccCCcccccCC-ccccCccCccccccCcCcccccccCh----------hhcCCCCC
Q 038699           76 LSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIP-FQIGNLVGLQDLQDLSYNSLTGEIPA----------QLGKLTRL  144 (237)
Q Consensus        76 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~~l~~n~~~~~~~~----------~~~~~~~L  144 (237)
                      +++|.+.+ ++ .+..+++|++|++++|.+....+ ..+..+++|+.| ++++|.+.+..+.          .+..+++|
T Consensus       100 L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L-~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L  176 (198)
T 1ds9_A          100 ISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDL-LLAGNPLYNDYKENNATSEYRIEVVKRLPNL  176 (198)
T ss_dssp             EEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEE-EECSCHHHHHHHTTTTHHHHHHHHHHHCSSC
T ss_pred             CcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEE-EecCCccccccccccchHHHHHHHHHhCCCc
Confidence            99999985 45 68889999999999999985332 468899999999 9999998755443          37789999


Q ss_pred             CeEeCcCCcCcC
Q 038699          145 QSLNLSHNNLSG  156 (237)
Q Consensus       145 ~~L~l~~n~l~~  156 (237)
                      +.|+  ++.++.
T Consensus       177 ~~Ld--~~~i~~  186 (198)
T 1ds9_A          177 KKLD--GMPVDV  186 (198)
T ss_dssp             SEEC--CGGGTT
T ss_pred             EEEC--CcccCH
Confidence            9998  666653

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.57  E-value=2e-14  Score=105.66  Aligned_cols=102  Identities=25%  Similarity=0.303  Sum_probs=55.6

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL   81 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i   81 (237)
                      +++++|+++. +|..+  .+++++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+
T Consensus        14 l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l   90 (170)
T 3g39_A           14 VDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL   90 (170)
T ss_dssp             EECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCcc
Confidence            4555555553 33222  14555666666666555455555556666666666665544444455555666666666655


Q ss_pred             cCcccccccCCCCCCEEEccCCccc
Q 038699           82 SGPIPNQIGELRDLRILNLSQNNLI  106 (237)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~n~~~  106 (237)
                      .+..+..+..+++|++|++++|.+.
T Consensus        91 ~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           91 KSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            5443444555555666666555554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.57  E-value=1.6e-14  Score=106.17  Aligned_cols=109  Identities=28%  Similarity=0.319  Sum_probs=68.4

Q ss_pred             CEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcC
Q 038699           72 DSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSH  151 (237)
Q Consensus        72 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~  151 (237)
                      +.+++++|.++ .+|..+  .++|++|++++|.+++..+..+..+++|+.| ++++|+++...+..|..+++|+.|++++
T Consensus        12 ~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L-~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           12 TTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRL-DLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEE-ECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEE-ECCCCCcCccChhhccCCCCCCEEECCC
Confidence            45555555555 334322  2555666666666655555556666666666 6666666655555566777777777777


Q ss_pred             CcCcCccCccccCCCCCCEEEcCCCcCcCCCCC
Q 038699          152 NNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPD  184 (237)
Q Consensus       152 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  184 (237)
                      |.+++..+..|..+++|++|++++|++++..+.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~  120 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSD  120 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGG
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCCchh
Confidence            777755555677777788888888877755443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.56  E-value=3.1e-14  Score=105.05  Aligned_cols=104  Identities=27%  Similarity=0.315  Sum_probs=49.0

Q ss_pred             cEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCC
Q 038699           24 VELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQN  103 (237)
Q Consensus        24 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n  103 (237)
                      +.+++++|.++ .+|..+.  ++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            34455555444 3333222  44555555555555444444455555555555555554333333444555555555555


Q ss_pred             cccccCCccccCccCccccccCcCcccc
Q 038699          104 NLIGTIPFQIGNLVGLQDLQDLSYNSLT  131 (237)
Q Consensus       104 ~~~~~~~~~~~~l~~L~~L~~l~~n~~~  131 (237)
                      .+....+..+..+++|+.| ++++|.+.
T Consensus        92 ~l~~l~~~~~~~l~~L~~L-~L~~N~~~  118 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHI-YLYNNPWD  118 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEE-ECCSSCBC
T ss_pred             ccceeCHHHhccccCCCEE-EeCCCCcc
Confidence            5543333334455555555 55555443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.54  E-value=4.9e-14  Score=103.96  Aligned_cols=108  Identities=27%  Similarity=0.304  Sum_probs=62.5

Q ss_pred             CEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcC
Q 038699           72 DSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSH  151 (237)
Q Consensus        72 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~  151 (237)
                      +.+++++|.+. .+|..+.  ++|++|++++|.+.+..|..+..+++|+.| ++++|++++..+..|..+++|+.|++++
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L-~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQL-YFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEE-ECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEE-ECCCCCCCccChhHhCCcchhhEEECCC
Confidence            34455555544 3333221  455555555555554445555555555555 6666655544444556667777777777


Q ss_pred             CcCcCccCccccCCCCCCEEEcCCCcCcCCCC
Q 038699          152 NNLSGEIPASLSSMLSLVAVNLSYNNLEGPLP  183 (237)
Q Consensus       152 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  183 (237)
                      |.++...+..|..+++|++|++++|++....+
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            77765444556777777777777777764443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.50  E-value=1.2e-15  Score=125.90  Aligned_cols=158  Identities=21%  Similarity=0.238  Sum_probs=114.1

Q ss_pred             CCCcEEEccCCcCCCccCccccC-----CCCCCEEeccCCcccccCcccc-cCCCCCCEEEccCCcCcCcccccc-----
Q 038699           21 SQLVELHLSSNQLSGEIPAHIGN-----LTELSTLSLNGNNISGQIPEEI-GGLLNLDSLDLSMNRLSGPIPNQI-----   89 (237)
Q Consensus        21 ~~L~~L~L~~n~i~~~~~~~~~~-----l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~i~~~~~~~~-----   89 (237)
                      +.|+.|++++|.++......+..     ..+|++|+|++|.+++.....+ ..+++|+.|++++|.+++.....+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            67889999999888543333322     2689999999998874433332 245688999999998874433333     


Q ss_pred             cCCCCCCEEEccCCccccc----CCccccCccCccccccCcCccccccc----ChhhcCCCCCCeEeCcCCcCcCc----
Q 038699           90 GELRDLRILNLSQNNLIGT----IPFQIGNLVGLQDLQDLSYNSLTGEI----PAQLGKLTRLQSLNLSHNNLSGE----  157 (237)
Q Consensus        90 ~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~~l~~n~~~~~~----~~~~~~~~~L~~L~l~~n~l~~~----  157 (237)
                      ...++|++|++++|.++..    ++..+...++|+.| ++++|.+.+..    ...+...++|+.|++++|.|++.    
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L-~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHL-SLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEE-ECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEE-eCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence            3467899999999988642    33445678889999 99999887543    44566778899999999998753    


Q ss_pred             cCccccCCCCCCEEEcCCCcCc
Q 038699          158 IPASLSSMLSLVAVNLSYNNLE  179 (237)
Q Consensus       158 ~~~~~~~~~~L~~L~l~~n~l~  179 (237)
                      ++..+...++|++|++++|.|+
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHHhCCCCCEEeccCCCCC
Confidence            3344556788999999999886

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.45  E-value=1.1e-15  Score=125.91  Aligned_cols=178  Identities=20%  Similarity=0.189  Sum_probs=127.4

Q ss_pred             CEEecCCcCCCCCCcccC-----CCCCCcEEEccCCcCCCccCccc-cCCCCCCEEeccCCcccccCcccc-----cCCC
Q 038699            1 MLGLAGNSIGGKIPAEIG-----SLSQLVELHLSSNQLSGEIPAHI-GNLTELSTLSLNGNNISGQIPEEI-----GGLL   69 (237)
Q Consensus         1 ~L~l~~n~~~~~~~~~~~-----~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~   69 (237)
                      .|+|++|.++......+.     ..++|++|+|++|.+++.....+ ..+++|++|++++|.+++.....+     ...+
T Consensus        76 ~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~  155 (372)
T 3un9_A           76 QLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQC  155 (372)
T ss_dssp             EEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTC
T ss_pred             EEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCC
Confidence            378999999865444432     23799999999999985433333 345789999999999985444443     3468


Q ss_pred             CCCEEEccCCcCcCc----ccccccCCCCCCEEEccCCccccc----CCccccCccCccccccCcCcccccccC----hh
Q 038699           70 NLDSLDLSMNRLSGP----IPNQIGELRDLRILNLSQNNLIGT----IPFQIGNLVGLQDLQDLSYNSLTGEIP----AQ  137 (237)
Q Consensus        70 ~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~~l~~n~~~~~~~----~~  137 (237)
                      +|++|++++|.+++.    ++..+..+++|++|++++|.+.+.    ++..+...++|+.| ++++|.+++...    ..
T Consensus       156 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L-~Ls~N~i~~~g~~~l~~~  234 (372)
T 3un9_A          156 QITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQEL-NVAYNGAGDTAALALARA  234 (372)
T ss_dssp             CCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEE-ECCSSCCCHHHHHHHHHH
T ss_pred             ccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeE-ECCCCCCCHHHHHHHHHH
Confidence            899999999999742    444557889999999999998753    24567778899999 999999976433    34


Q ss_pred             hcCCCCCCeEeCcCCcCcCccCccccCCCC-----CCEEE--cCCCcCc
Q 038699          138 LGKLTRLQSLNLSHNNLSGEIPASLSSMLS-----LVAVN--LSYNNLE  179 (237)
Q Consensus       138 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-----L~~L~--l~~n~l~  179 (237)
                      +...++|++|++++|.|++.....+..+..     ++.+.  +..+.+.
T Consensus       235 L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          235 AREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             HHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred             HHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence            556789999999999998655544443321     56666  5566554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.45  E-value=3.6e-12  Score=106.05  Aligned_cols=183  Identities=8%  Similarity=0.003  Sum_probs=97.5

Q ss_pred             CCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCccccc
Q 038699            9 IGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQ   88 (237)
Q Consensus         9 ~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~   88 (237)
                      ++.+...+|.+|++|+.+++.+|.++.....+|. +.+|+.+.+..+ ++......|..+++|+.+++..+ ++.....+
T Consensus       168 l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~a  244 (401)
T 4fdw_A          168 LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEA  244 (401)
T ss_dssp             CCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTT
T ss_pred             ccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccc
Confidence            3444444555555555555555555533334443 345555555533 44344455556666666666543 22222334


Q ss_pred             ccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccc-----cccChhhcCCCCCCeEeCcCCcCcCccCcccc
Q 038699           89 IGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLT-----GEIPAQLGKLTRLQSLNLSHNNLSGEIPASLS  163 (237)
Q Consensus        89 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~-----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  163 (237)
                      |.. .+|+.+.+.. .+......+|..+++|+.+ .+.++.+.     .....+|.++++|+.+++.+ .++.....+|.
T Consensus       245 F~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l-~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~  320 (401)
T 4fdw_A          245 FRE-SGITTVKLPN-GVTNIASRAFYYCPELAEV-TTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLG  320 (401)
T ss_dssp             TTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEE-EEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTT
T ss_pred             ccc-CCccEEEeCC-CccEEChhHhhCCCCCCEE-EeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhc
Confidence            444 4555555532 3333445566667777777 66665543     35556677777777777763 35545566677


Q ss_pred             CCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccC
Q 038699          164 SMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNN  199 (237)
Q Consensus       164 ~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n  199 (237)
                      ++++|+.+++..| ++..-.....-..++.+.+.+|
T Consensus       321 ~c~~L~~l~lp~~-l~~I~~~aF~~~~L~~l~l~~n  355 (401)
T 4fdw_A          321 GNRKVTQLTIPAN-VTQINFSAFNNTGIKEVKVEGT  355 (401)
T ss_dssp             TCCSCCEEEECTT-CCEECTTSSSSSCCCEEEECCS
T ss_pred             CCCCccEEEECcc-ccEEcHHhCCCCCCCEEEEcCC
Confidence            7777777777544 4322222222225666666655

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.42  E-value=4.1e-12  Score=105.65  Aligned_cols=172  Identities=12%  Similarity=0.103  Sum_probs=142.4

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL   81 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i   81 (237)
                      +++.+|+++.+...+|. +.+|+.+.+..+ ++.....+|.++++|+.+.+..+ ++......|.. .+|+.+.+. +.+
T Consensus       185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i  259 (401)
T 4fdw_A          185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGV  259 (401)
T ss_dssp             EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTC
T ss_pred             eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCc
Confidence            67888899987777787 689999999855 77677889999999999999985 56566677877 899999995 445


Q ss_pred             cCcccccccCCCCCCEEEccCCccc-----ccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcC
Q 038699           82 SGPIPNQIGELRDLRILNLSQNNLI-----GTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSG  156 (237)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~n~~~-----~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~  156 (237)
                      ......+|..+++|+.+.+.+|.+.     .....+|..+++|+.+ .+. +.++.....+|.++.+|+.+.+..+ ++.
T Consensus       260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l-~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~  336 (401)
T 4fdw_A          260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARF-EIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQ  336 (401)
T ss_dssp             CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEE-CCC-TTCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred             cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeE-EeC-CceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence            5455678999999999999988764     3556789999999999 998 4577788899999999999999665 665


Q ss_pred             ccCccccCCCCCCEEEcCCCcCcCCC
Q 038699          157 EIPASLSSMLSLVAVNLSYNNLEGPL  182 (237)
Q Consensus       157 ~~~~~~~~~~~L~~L~l~~n~l~~~~  182 (237)
                      ....+|..+ +|+.+++++|.+....
T Consensus       337 I~~~aF~~~-~L~~l~l~~n~~~~l~  361 (401)
T 4fdw_A          337 INFSAFNNT-GIKEVKVEGTTPPQVF  361 (401)
T ss_dssp             ECTTSSSSS-CCCEEEECCSSCCBCC
T ss_pred             EcHHhCCCC-CCCEEEEcCCCCcccc
Confidence            778899999 9999999999887433

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.42  E-value=1.3e-12  Score=106.48  Aligned_cols=102  Identities=23%  Similarity=0.241  Sum_probs=87.5

Q ss_pred             EEecCC-cCCCCCCcccCCCCCCcEEEccC-CcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCC
Q 038699            2 LGLAGN-SIGGKIPAEIGSLSQLVELHLSS-NQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMN   79 (237)
Q Consensus         2 L~l~~n-~~~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   79 (237)
                      ++++++ +++. +|. +..+++|++|+|++ |.+.+..+..|..+++|++|+|++|.+++..+..|..+++|+.|+|++|
T Consensus        13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            677787 8885 555 88999999999996 9999777788999999999999999999888888999999999999999


Q ss_pred             cCcCcccccccCCCCCCEEEccCCccc
Q 038699           80 RLSGPIPNQIGELRDLRILNLSQNNLI  106 (237)
Q Consensus        80 ~i~~~~~~~~~~l~~L~~L~l~~n~~~  106 (237)
                      .+.+..+..+..++ |+.|++.+|.+.
T Consensus        91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           91 ALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            99965555666565 999999999886

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.40  E-value=1.1e-14  Score=126.89  Aligned_cols=129  Identities=13%  Similarity=0.130  Sum_probs=59.6

Q ss_pred             CCCCCcEEEccCCcCCCccCccccC-CCC-CCEEeccCCc-ccc-cCcccccCCCCCCEEEccCCcCcCc----cccccc
Q 038699           19 SLSQLVELHLSSNQLSGEIPAHIGN-LTE-LSTLSLNGNN-ISG-QIPEEIGGLLNLDSLDLSMNRLSGP----IPNQIG   90 (237)
Q Consensus        19 ~l~~L~~L~L~~n~i~~~~~~~~~~-l~~-L~~L~l~~n~-l~~-~~~~~~~~l~~L~~L~l~~n~i~~~----~~~~~~   90 (237)
                      .+++|++|+|++|.+++..+..+.. ++. |++|++++|. ++. .++.....+++|++|++++|.+.+.    ++..+.
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            4566777777666665443333332 222 6666665554 110 1111222455666666666655433    222233


Q ss_pred             CCCCCCEEEccCCccc----ccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeC
Q 038699           91 ELRDLRILNLSQNNLI----GTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNL  149 (237)
Q Consensus        91 ~l~~L~~L~l~~n~~~----~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l  149 (237)
                      .+++|++|++++|.+.    ...+..+..+++|+.| ++++|.+.+ .+..+..+++|+.|++
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L-~L~~~~~~~-l~~~~~~~~~L~~L~l  250 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV-KVGDFEILE-LVGFFKAAANLEEFCG  250 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE-ECSSCBGGG-GHHHHHHCTTCCEEEE
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE-eccCccHHH-HHHHHhhhhHHHhhcc
Confidence            4555555555555553    1222233444555555 555555442 2233333444444443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.37  E-value=3.2e-12  Score=104.18  Aligned_cols=104  Identities=26%  Similarity=0.261  Sum_probs=81.3

Q ss_pred             CEEeccCC-cccccCcccccCCCCCCEEEccC-CcCcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccC
Q 038699           48 STLSLNGN-NISGQIPEEIGGLLNLDSLDLSM-NRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDL  125 (237)
Q Consensus        48 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l  125 (237)
                      ..++.+++ .++ .+|. +..+++|+.|+|++ |.+.+..+..|..+++|++|+|++|.+.+..+..|..+++|+.| +|
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L-~l   87 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL-NL   87 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE-EC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEE-eC
Confidence            34677777 777 5677 88888888888885 88886666778888888888888888887777778888888888 88


Q ss_pred             cCcccccccChhhcCCCCCCeEeCcCCcCc
Q 038699          126 SYNSLTGEIPAQLGKLTRLQSLNLSHNNLS  155 (237)
Q Consensus       126 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  155 (237)
                      ++|++++..+..|..++ |+.|++.+|.+.
T Consensus        88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           88 SFNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            88888866666665555 888888888776

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.36  E-value=1.2e-13  Score=120.14  Aligned_cols=58  Identities=12%  Similarity=0.121  Sum_probs=24.0

Q ss_pred             CCCCCcEEEccCCcCCC----ccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEcc
Q 038699           19 SLSQLVELHLSSNQLSG----EIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLS   77 (237)
Q Consensus        19 ~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   77 (237)
                      .+++|++|++++|.+++    .++..+..+++|+.|++++|.+. .++..+..+++|++|+++
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~  251 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGG  251 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHHHHCTTCCEEEEC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHHhhhhHHHhhccc
Confidence            34444444444444431    12222334445555555554444 233333344444444443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.32  E-value=1.5e-14  Score=125.99  Aligned_cols=132  Identities=14%  Similarity=0.096  Sum_probs=76.7

Q ss_pred             CCCCCEEEccCCcCcCccccccc-CCCCCCEEEcc--C----Cccccc-----CCccccCccCccccccCcCcccccccC
Q 038699           68 LLNLDSLDLSMNRLSGPIPNQIG-ELRDLRILNLS--Q----NNLIGT-----IPFQIGNLVGLQDLQDLSYNSLTGEIP  135 (237)
Q Consensus        68 l~~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~l~--~----n~~~~~-----~~~~~~~l~~L~~L~~l~~n~~~~~~~  135 (237)
                      +++|+.|.+..+.+++.....+. .+++|++|+++  +    +.++..     .+..+..+++|+.| ++++ .+++...
T Consensus       371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L-~L~~-~l~~~~~  448 (594)
T 2p1m_B          371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRL-SLSG-LLTDKVF  448 (594)
T ss_dssp             CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEE-ECCS-SCCHHHH
T ss_pred             chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEE-eecC-cccHHHH
Confidence            45555555555555433222332 46777777777  2    333311     11124556677777 7766 4444433


Q ss_pred             hhhcC-CCCCCeEeCcCCcCcCccCccc-cCCCCCCEEEcCCCcCcCCCC--CCCccCCCccchhccCCc
Q 038699          136 AQLGK-LTRLQSLNLSHNNLSGEIPASL-SSMLSLVAVNLSYNNLEGPLP--DGSVFSSSQSSAFTNNKD  201 (237)
Q Consensus       136 ~~~~~-~~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~--~~~~~~~l~~~~l~~n~~  201 (237)
                      ..+.. +++|+.|++++|.+++..+..+ ..+++|++|++++|++++...  ....+++++.+++.+|+.
T Consensus       449 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            34433 6778888888888765444444 567888888888888753221  123356778888877754

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.29  E-value=8.8e-14  Score=121.09  Aligned_cols=109  Identities=18%  Similarity=0.180  Sum_probs=59.6

Q ss_pred             CCCCCcEEEccCCcCCCccCcccc-CCCCCCEEeccCC-ccccc-CcccccCCCCCCEEEccCCcCcCcccccc----cC
Q 038699           19 SLSQLVELHLSSNQLSGEIPAHIG-NLTELSTLSLNGN-NISGQ-IPEEIGGLLNLDSLDLSMNRLSGPIPNQI----GE   91 (237)
Q Consensus        19 ~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~~----~~   91 (237)
                      .+++|++|++++|.+++..+..+. .+++|++|++++| .+++. ++.....+++|++|++++|.+++..+..+    ..
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            456777777777766654444443 4667777777776 34321 23333456677777777776554333222    24


Q ss_pred             CCCCCEEEccCCc--ccc-cCCccccCccCccccccCcCc
Q 038699           92 LRDLRILNLSQNN--LIG-TIPFQIGNLVGLQDLQDLSYN  128 (237)
Q Consensus        92 l~~L~~L~l~~n~--~~~-~~~~~~~~l~~L~~L~~l~~n  128 (237)
                      +++|++|++++|.  +.. ........+++|+.| ++++|
T Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L-~L~~~  221 (594)
T 2p1m_B          183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSL-KLNRA  221 (594)
T ss_dssp             CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEE-ECCTT
T ss_pred             CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEE-ecCCC
Confidence            5567777776664  211 011112334666666 66655

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.04  E-value=1e-10  Score=95.77  Aligned_cols=159  Identities=18%  Similarity=0.208  Sum_probs=105.4

Q ss_pred             cCCCCCCcEEEccCCcCC---------CccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccc
Q 038699           17 IGSLSQLVELHLSSNQLS---------GEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPN   87 (237)
Q Consensus        17 ~~~l~~L~~L~L~~n~i~---------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~   87 (237)
                      ...+++|+.|.+.+....         +.+...+..+|+|+.|.++++.-. .++. + .+++|+.|++..+.+......
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~  211 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVE  211 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHH
Confidence            345688999988765331         123344567899999999887311 2233 3 378999999998887643333


Q ss_pred             ccc--CCCCCCEEEccC--Cccccc-----CCccc--cCccCccccccCcCcccccccChhh---cCCCCCCeEeCcCCc
Q 038699           88 QIG--ELRDLRILNLSQ--NNLIGT-----IPFQI--GNLVGLQDLQDLSYNSLTGEIPAQL---GKLTRLQSLNLSHNN  153 (237)
Q Consensus        88 ~~~--~l~~L~~L~l~~--n~~~~~-----~~~~~--~~l~~L~~L~~l~~n~~~~~~~~~~---~~~~~L~~L~l~~n~  153 (237)
                      .+.  .+++|++|+|+.  +...+.     +...+  ..+++|+.| .+.+|.+.+.....+   ..+++|+.|+++.|.
T Consensus       212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L-~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~  290 (362)
T 2ra8_A          212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWL-GIVDAEEQNVVVEMFLESDILPQLETMDISAGV  290 (362)
T ss_dssp             HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEE-EEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred             HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEE-eCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence            343  689999998853  221111     11122  247899999 999988864333333   247889999999999


Q ss_pred             CcCcc----CccccCCCCCCEEEcCCCcCc
Q 038699          154 LSGEI----PASLSSMLSLVAVNLSYNNLE  179 (237)
Q Consensus       154 l~~~~----~~~~~~~~~L~~L~l~~n~l~  179 (237)
                      +++..    +..+..+++|+.|++++|.++
T Consensus       291 L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          291 LTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             CBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            88642    333455789999999999876

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.96  E-value=5.4e-10  Score=91.54  Aligned_cols=159  Identities=19%  Similarity=0.246  Sum_probs=109.1

Q ss_pred             CcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCccccc--CCCCCCEEEccC--CcCcC-----c
Q 038699           14 PAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIG--GLLNLDSLDLSM--NRLSG-----P   84 (237)
Q Consensus        14 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~--n~i~~-----~   84 (237)
                      ...+..+|+|+.|.+.++.-. ..+. +. +++|++|++..+.+.......+.  .+++|+.|+|+.  +...+     .
T Consensus       165 ~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~  241 (362)
T 2ra8_A          165 SPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV  241 (362)
T ss_dssp             HHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred             HHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence            344567899999999987322 2222 33 78999999999988754434443  789999999863  22111     1


Q ss_pred             ccccc--cCCCCCCEEEccCCcccccCCccc---cCccCccccccCcCcccccccCh----hhcCCCCCCeEeCcCCcCc
Q 038699           85 IPNQI--GELRDLRILNLSQNNLIGTIPFQI---GNLVGLQDLQDLSYNSLTGEIPA----QLGKLTRLQSLNLSHNNLS  155 (237)
Q Consensus        85 ~~~~~--~~l~~L~~L~l~~n~~~~~~~~~~---~~l~~L~~L~~l~~n~~~~~~~~----~~~~~~~L~~L~l~~n~l~  155 (237)
                      +...+  ..+++|++|++.+|.+.+..+..+   ..+++|+.| +++.|.+.+....    .+..+++|+.|++++|.++
T Consensus       242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~L-dLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETM-DISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEE-ECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEE-ECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            11222  357999999999998864332222   357899999 9999998864332    2355799999999999998


Q ss_pred             CccCccccCCCCCCEEEcCCCc
Q 038699          156 GEIPASLSSMLSLVAVNLSYNN  177 (237)
Q Consensus       156 ~~~~~~~~~~~~L~~L~l~~n~  177 (237)
                      +.....+...- -..++++.++
T Consensus       321 d~~~~~l~~al-g~~~~~~~~~  341 (362)
T 2ra8_A          321 DEMKKELQKSL-PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHHHHHHC-CSEEECCSBC
T ss_pred             HHHHHHHHHHc-CCEEEecCCc
Confidence            65555554411 4668998887

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.81  E-value=1.2e-09  Score=81.18  Aligned_cols=119  Identities=18%  Similarity=0.228  Sum_probs=58.3

Q ss_pred             cccCCCCCCEEeccCC-ccccc----CcccccCCCCCCEEEccCCcCcCc----ccccccCCCCCCEEEccCCcccccCC
Q 038699           40 HIGNLTELSTLSLNGN-NISGQ----IPEEIGGLLNLDSLDLSMNRLSGP----IPNQIGELRDLRILNLSQNNLIGTIP  110 (237)
Q Consensus        40 ~~~~l~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~  110 (237)
                      .+...+.|++|+|++| .+.+.    +...+...++|++|++++|.+.+.    +...+...+.|++|++++|.+.+...
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            3444555666666665 55421    223334445555555555555421    12223333445555555554432100


Q ss_pred             ccccCccCccccccCcCcccccccChhhcCCCCCCeEeC--cCCcCcCc----cCccccCCCCCCEEEcCCCcCc
Q 038699          111 FQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNL--SHNNLSGE----IPASLSSMLSLVAVNLSYNNLE  179 (237)
Q Consensus       111 ~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l--~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~  179 (237)
                      .                     .....+...++|++|++  ++|.+.+.    +...+...++|++|++++|.+.
T Consensus       111 ~---------------------~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          111 L---------------------ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             H---------------------HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             H---------------------HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            0                     11233444556666666  56666542    2334445567777777777664

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.75  E-value=1.6e-09  Score=80.48  Aligned_cols=115  Identities=15%  Similarity=0.159  Sum_probs=81.0

Q ss_pred             cccCCCCCCcEEEccCC-cCCCc----cCccccCCCCCCEEeccCCccccc----CcccccCCCCCCEEEccCCcCcCc-
Q 038699           15 AEIGSLSQLVELHLSSN-QLSGE----IPAHIGNLTELSTLSLNGNNISGQ----IPEEIGGLLNLDSLDLSMNRLSGP-   84 (237)
Q Consensus        15 ~~~~~l~~L~~L~L~~n-~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~i~~~-   84 (237)
                      ..+...+.|++|+|++| .+...    +...+...++|++|+|++|.+.+.    +...+...++|++|++++|.+.+. 
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            34567899999999999 88743    445566788999999999999753    344555668999999999999853 


Q ss_pred             ---ccccccCCCCCCEEEc--cCCcccccC----CccccCccCccccccCcCccc
Q 038699           85 ---IPNQIGELRDLRILNL--SQNNLIGTI----PFQIGNLVGLQDLQDLSYNSL  130 (237)
Q Consensus        85 ---~~~~~~~l~~L~~L~l--~~n~~~~~~----~~~~~~l~~L~~L~~l~~n~~  130 (237)
                         +...+...+.|++|++  ++|.+....    ...+...++|+.| ++++|.+
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L-~L~~n~i  163 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKF-GYHFTQQ  163 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEE-ECCCSSH
T ss_pred             HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEE-eccCCCC
Confidence               3456677788888888  778776432    2223333444444 5544444

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.64  E-value=2.5e-07  Score=76.53  Aligned_cols=138  Identities=12%  Similarity=0.051  Sum_probs=81.1

Q ss_pred             CCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccc-
Q 038699            9 IGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPN-   87 (237)
Q Consensus         9 ~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~-   87 (237)
                      ++.+...+|.+|.+|+.+.+..+ ++.....+|.++.+|+.+++..+ ++......|..+.+|+.+.+..+-.. .... 
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~-i~~~a  135 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKS-IGVEA  135 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCE-ECTTT
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceee-eccee
Confidence            44556677999999999999754 66566788999999999999765 55455677888888887766543211 1122 


Q ss_pred             ---------------------cccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCe
Q 038699           88 ---------------------QIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQS  146 (237)
Q Consensus        88 ---------------------~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~  146 (237)
                                           +|..+++|+.+.+..+.. ......|..+.+|+.+ .+..+ ++.....+|.++..|+.
T Consensus       136 F~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i-~l~~~-~~~I~~~~F~~~~~L~~  212 (394)
T 4fs7_A          136 FKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSI-KLPRN-LKIIRDYCFAECILLEN  212 (394)
T ss_dssp             TTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBC-CCCTT-CCEECTTTTTTCTTCCB
T ss_pred             eecccccccccCccccccchhhhcccCCCcEEecCCccc-eeccccccCCCCceEE-EcCCC-ceEeCchhhccccccce
Confidence                                 334444555555543321 1333344455555555 44443 22244444555555555


Q ss_pred             EeCcCC
Q 038699          147 LNLSHN  152 (237)
Q Consensus       147 L~l~~n  152 (237)
                      +.+..+
T Consensus       213 i~~~~~  218 (394)
T 4fs7_A          213 MEFPNS  218 (394)
T ss_dssp             CCCCTT
T ss_pred             eecCCC
Confidence            554443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.60  E-value=1.3e-06  Score=72.33  Aligned_cols=121  Identities=10%  Similarity=0.181  Sum_probs=79.4

Q ss_pred             cccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCC
Q 038699           88 QIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLS  167 (237)
Q Consensus        88 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  167 (237)
                      +|..+..|+.+.+..+... ....+|..+.+|+.+ .+. +.++.....+|.++.+|+.+++..+ ++.....+|.++.+
T Consensus       260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i-~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~  335 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDI-EFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ  335 (394)
T ss_dssp             TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEE-ECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred             eeeecccccEEecccccce-ecCcccccccccccc-cCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence            4566788888888765432 555678888888888 775 4455577778888889999988764 55466678888899


Q ss_pred             CCEEEcCCCcCcCCCCCCC--ccCCCccchhccCCcccccCCCCCCCCCCcc
Q 038699          168 LVAVNLSYNNLEGPLPDGS--VFSSSQSSAFTNNKDLCGKVQGLRPCNALST  217 (237)
Q Consensus       168 L~~L~l~~n~l~~~~~~~~--~~~~l~~~~l~~n~~l~~~~~~~~~C~~~~~  217 (237)
                      |+.+.+..+ ++ .+....  .-.+|+.+.+.++.....   ....|..+..
T Consensus       336 L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~~~~~---~~~~~~~L~~  382 (394)
T 4gt6_A          336 LERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSRSQWN---AISTDSGLQN  382 (394)
T ss_dssp             CCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCHHHHH---TCBCCCCC--
T ss_pred             CCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCceeehh---hhhccCCCCE
Confidence            999888654 44 344331  124577777776643332   2345655543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.56  E-value=8.3e-07  Score=72.94  Aligned_cols=155  Identities=11%  Similarity=0.102  Sum_probs=102.3

Q ss_pred             ccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCC
Q 038699           16 EIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDL   95 (237)
Q Consensus        16 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L   95 (237)
                      .+..+..+..+.+...... ....++..+..|+.+.+..+ ++......+..+..|+.+.+..+ ++......+..+.+|
T Consensus       189 ~~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l  265 (379)
T 4h09_A          189 SYPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTAL  265 (379)
T ss_dssp             ECCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred             cccccccccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehh
Confidence            3455566666665544333 44555667777887777654 33355566777778888877655 333444567777788


Q ss_pred             CEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCC
Q 038699           96 RILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSY  175 (237)
Q Consensus        96 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~  175 (237)
                      +.+.+..+ +.......|..+.+|+.+ .+..+.++.....+|.++.+|+.+.+..+ ++.....+|.++.+|+.+.+..
T Consensus       266 ~~i~l~~~-i~~i~~~aF~~c~~L~~i-~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          266 KTLNFYAK-VKTVPYLLCSGCSNLTKV-VMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             CEEEECCC-CSEECTTTTTTCTTCCEE-EECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             cccccccc-ceeccccccccccccccc-cccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence            88877654 333445567777888888 77777777677777888888888888654 5545566788888888777754


Q ss_pred             C
Q 038699          176 N  176 (237)
Q Consensus       176 n  176 (237)
                      +
T Consensus       343 ~  343 (379)
T 4h09_A          343 S  343 (379)
T ss_dssp             T
T ss_pred             c
Confidence            3

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.55  E-value=1.3e-08  Score=79.64  Aligned_cols=104  Identities=25%  Similarity=0.284  Sum_probs=67.7

Q ss_pred             cCCCCCCcE--EEccCCcCC---CccCccccCCCCCCEEeccCCcccc--cCcccccCCCCCCEEEccCCcCcCcccccc
Q 038699           17 IGSLSQLVE--LHLSSNQLS---GEIPAHIGNLTELSTLSLNGNNISG--QIPEEIGGLLNLDSLDLSMNRLSGPIPNQI   89 (237)
Q Consensus        17 ~~~l~~L~~--L~L~~n~i~---~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~   89 (237)
                      |...+.|+.  +++..|...   ..+......+++|+.|+|++|.+++  .++..+..+++|+.|+|++|.+.+.  ..+
T Consensus       137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l  214 (267)
T 3rw6_A          137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--REL  214 (267)
T ss_dssp             GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGG
T ss_pred             cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhh
Confidence            444555554  566666433   1122222467888888888888885  3345666788899999988888754  233


Q ss_pred             cCCC--CCCEEEccCCcccccCC-------ccccCccCcccc
Q 038699           90 GELR--DLRILNLSQNNLIGTIP-------FQIGNLVGLQDL  122 (237)
Q Consensus        90 ~~l~--~L~~L~l~~n~~~~~~~-------~~~~~l~~L~~L  122 (237)
                      ..+.  +|++|++++|.+.+..|       ..+..+++|+.|
T Consensus       215 ~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~L  256 (267)
T 3rw6_A          215 DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRL  256 (267)
T ss_dssp             GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEE
T ss_pred             hhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeE
Confidence            4444  88889999988875444       235567777766

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.52  E-value=1.2e-06  Score=72.36  Aligned_cols=158  Identities=11%  Similarity=0.011  Sum_probs=82.2

Q ss_pred             CCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCccccc
Q 038699            9 IGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQ   88 (237)
Q Consensus         9 ~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~   88 (237)
                      ++.+...+|.++..|+.+.+..+...  +...+.....|+.+.+.... +......+..+..++.+.+..+... .....
T Consensus       196 ~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~  271 (394)
T 4fs7_A          196 LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSL  271 (394)
T ss_dssp             CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCT
T ss_pred             ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcce-eeccc
Confidence            44444566777888887777665433  22223344566666665432 2244455666666766666555433 33344


Q ss_pred             ccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCC
Q 038699           89 IGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSL  168 (237)
Q Consensus        89 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L  168 (237)
                      +..+..++.+....+.+.   ...+..+.+|+.+ .+..+ ++.....+|.++.+|+.+++..+ ++.....+|.++.+|
T Consensus       272 F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i-~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L  345 (394)
T 4fs7_A          272 FYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEV-KLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSL  345 (394)
T ss_dssp             TTTCTTCCEEEECSSEEC---TTTTTTCTTCCEE-EECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTC
T ss_pred             cccccccceeccCceeec---ccccccccccccc-ccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCC
Confidence            555555555555443322   1234455555555 44433 33344455555555555555433 333444555555555


Q ss_pred             CEEEcCCC
Q 038699          169 VAVNLSYN  176 (237)
Q Consensus       169 ~~L~l~~n  176 (237)
                      +.+++..+
T Consensus       346 ~~i~lp~~  353 (394)
T 4fs7_A          346 SNINFPLS  353 (394)
T ss_dssp             CEECCCTT
T ss_pred             CEEEECcc
Confidence            55555444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.52  E-value=5.4e-08  Score=71.02  Aligned_cols=84  Identities=13%  Similarity=0.130  Sum_probs=46.9

Q ss_pred             CCCcEEEccCCcCCCccCccccCCCCCCEEeccCCc-ccccCcccccCC----CCCCEEEccCCc-CcCcccccccCCCC
Q 038699           21 SQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNN-ISGQIPEEIGGL----LNLDSLDLSMNR-LSGPIPNQIGELRD   94 (237)
Q Consensus        21 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l----~~L~~L~l~~n~-i~~~~~~~~~~l~~   94 (237)
                      ..|+.|+++++.+++..-..+..+++|++|+|++|. +++..-..+..+    ++|++|++++|. +++.--..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            356666666666665444455666666666666663 443333333333    256666666653 55333334455666


Q ss_pred             CCEEEccCCc
Q 038699           95 LRILNLSQNN  104 (237)
Q Consensus        95 L~~L~l~~n~  104 (237)
                      |++|++++|.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            6666666654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.50  E-value=4e-09  Score=82.51  Aligned_cols=97  Identities=28%  Similarity=0.288  Sum_probs=69.8

Q ss_pred             EeccCCccc---ccCcccccCCCCCCEEEccCCcCcC--cccccccCCCCCCEEEccCCcccccCCccccCcc--Ccccc
Q 038699           50 LSLNGNNIS---GQIPEEIGGLLNLDSLDLSMNRLSG--PIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLV--GLQDL  122 (237)
Q Consensus        50 L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~--~L~~L  122 (237)
                      ++++.|...   ..+......+++|+.|+|++|.+.+  .++..+..+++|+.|+|++|.+.+.  ..+..+.  +|+.|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L  225 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL  225 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence            455666433   1122223568899999999999986  3445667899999999999999854  2344444  89999


Q ss_pred             ccCcCcccccccC-------hhhcCCCCCCeEeC
Q 038699          123 QDLSYNSLTGEIP-------AQLGKLTRLQSLNL  149 (237)
Q Consensus       123 ~~l~~n~~~~~~~-------~~~~~~~~L~~L~l  149 (237)
                       ++.+|.+.+..+       ..+..+++|+.||-
T Consensus       226 -~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          226 -WLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             -ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred             -EccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence             999999976444       23667899999873

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.44  E-value=8.4e-07  Score=73.38  Aligned_cols=149  Identities=9%  Similarity=0.105  Sum_probs=101.0

Q ss_pred             CCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEc
Q 038699           21 SQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNL  100 (237)
Q Consensus        21 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l  100 (237)
                      ..+..+.+.. .++.....+|..+..|+.+.+..+... .....|.++.+|+.+.+.. .+.......|..+.+|+.+.+
T Consensus       242 ~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~l  318 (394)
T 4gt6_A          242 REDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDI  318 (394)
T ss_dssp             CCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEEC
T ss_pred             cccceEEcCC-cceEcccceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEe
Confidence            3444555543 233345677888899999998776544 6667888889999998864 344344567888899999999


Q ss_pred             cCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcC
Q 038699          101 SQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL  178 (237)
Q Consensus       101 ~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l  178 (237)
                      ..+ ++.....+|.++.+|+.+ .+..+ ++.....+|.++.+|+.+++.++...   ...+..+.+|+.+.+..+.+
T Consensus       319 p~~-v~~I~~~aF~~C~~L~~i-~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          319 PEG-ITQILDDAFAGCEQLERI-AIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             CTT-CCEECTTTTTTCTTCCEE-EECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred             CCc-ccEehHhHhhCCCCCCEE-EECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence            764 554556788899999998 88654 66577788999999999999887543   24566788888888776654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.42  E-value=3e-06  Score=69.54  Aligned_cols=185  Identities=11%  Similarity=0.077  Sum_probs=126.6

Q ss_pred             cCCCCCCcccCCCCCCcEEEccCCcCCC------------ccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEE
Q 038699            8 SIGGKIPAEIGSLSQLVELHLSSNQLSG------------EIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLD   75 (237)
Q Consensus         8 ~~~~~~~~~~~~l~~L~~L~L~~n~i~~------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   75 (237)
                      .++.+...+|..+..++.+.+..+....            .....+.....+..+.+...... .....+....+|+.+.
T Consensus       145 ~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~  223 (379)
T 4h09_A          145 SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKIT  223 (379)
T ss_dssp             TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEE
T ss_pred             eeeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccceeE-Eeecccccccccceee
Confidence            4555666778888888888776543321            12234455566777766654333 4556677788899988


Q ss_pred             ccCCcCcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCc
Q 038699           76 LSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLS  155 (237)
Q Consensus        76 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  155 (237)
                      +..+ +.......+..+..|+.+.+..+ ++.....++..+.+|+.+ .+..+ +......+|.++.+|+.+.+.++.++
T Consensus       224 ~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i-~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~  299 (379)
T 4h09_A          224 ITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTL-NFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE  299 (379)
T ss_dssp             CCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEE-EECCC-CSEECTTTTTTCTTCCEEEECCTTCC
T ss_pred             eccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccc-ccccc-ceeccccccccccccccccccccccc
Confidence            8665 33244567788899999998775 544556778888889888 77654 55577788999999999999988888


Q ss_pred             CccCccccCCCCCCEEEcCCCcCcCCCCCCC-c-cCCCccchhccC
Q 038699          156 GEIPASLSSMLSLVAVNLSYNNLEGPLPDGS-V-FSSSQSSAFTNN  199 (237)
Q Consensus       156 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~-~~~l~~~~l~~n  199 (237)
                      .....+|.++.+|+.+++..+ ++ .+.... . -.+++.+.+-.+
T Consensus       300 ~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          300 TLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             EECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCCTT
T ss_pred             eehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEECCc
Confidence            677788999999999999754 44 333321 1 134556655443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.37  E-value=9.8e-08  Score=69.66  Aligned_cols=36  Identities=8%  Similarity=0.143  Sum_probs=21.3

Q ss_pred             CCCCEEEccCCcCcCcccccccCCCCCCEEEccCCc
Q 038699           69 LNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNN  104 (237)
Q Consensus        69 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~  104 (237)
                      ..|+.|+++++.+++.--..+..+++|++|++++|.
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~   96 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH   96 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence            356666666666654433445566666666666663

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.75  E-value=1.2e-05  Score=59.64  Aligned_cols=88  Identities=15%  Similarity=0.196  Sum_probs=39.9

Q ss_pred             cCCCCCCEEEccCCccccc----CCccccCccCccccccCcCccccccc----ChhhcCCCCCCeEeCcCC---cCcC--
Q 038699           90 GELRDLRILNLSQNNLIGT----IPFQIGNLVGLQDLQDLSYNSLTGEI----PAQLGKLTRLQSLNLSHN---NLSG--  156 (237)
Q Consensus        90 ~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~~l~~n~~~~~~----~~~~~~~~~L~~L~l~~n---~l~~--  156 (237)
                      ...+.|+.|+|++|.+.+.    +.+.+..-+.|+.| ++++|.|.+..    ..++..-..|++|+++++   .+.+  
T Consensus        67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L-~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g  145 (197)
T 1pgv_A           67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVL-NVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV  145 (197)
T ss_dssp             TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEE-ECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred             hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeE-ecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence            3344444444444444322    11222233444444 55555444321    123344455666666543   2322  


Q ss_pred             --ccCccccCCCCCCEEEcCCCcC
Q 038699          157 --EIPASLSSMLSLVAVNLSYNNL  178 (237)
Q Consensus       157 --~~~~~~~~~~~L~~L~l~~n~l  178 (237)
                        .+...+..-+.|++|+++.|.+
T Consensus       146 ~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          146 EMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHHhCCCcCeEeccCCCc
Confidence              1233444556677777765543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.68  E-value=2e-05  Score=58.54  Aligned_cols=112  Identities=15%  Similarity=0.203  Sum_probs=67.7

Q ss_pred             cCCCCCCEEeccCC-cccc----cCcccccCCCCCCEEEccCCcCcCc----ccccccCCCCCCEEEccCCccccc----
Q 038699           42 GNLTELSTLSLNGN-NISG----QIPEEIGGLLNLDSLDLSMNRLSGP----IPNQIGELRDLRILNLSQNNLIGT----  108 (237)
Q Consensus        42 ~~l~~L~~L~l~~n-~l~~----~~~~~~~~l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~l~~n~~~~~----  108 (237)
                      ..-+.|++|+|+++ .+.+    .+...+..-..|+.|+|++|.+.+.    +.+.+..-+.|++|+|++|.|...    
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            34456777777764 5543    2344555566777777777777633    333445567777777777777532    


Q ss_pred             CCccccCccCccccccCcCc---cccc----ccChhhcCCCCCCeEeCcCCcC
Q 038699          109 IPFQIGNLVGLQDLQDLSYN---SLTG----EIPAQLGKLTRLQSLNLSHNNL  154 (237)
Q Consensus       109 ~~~~~~~l~~L~~L~~l~~n---~~~~----~~~~~~~~~~~L~~L~l~~n~l  154 (237)
                      +.+.+..-..|+.| ++++|   .+..    .+...+..-++|..|+++.|.+
T Consensus       118 la~aL~~N~tL~~L-~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          118 LLRSTLVTQSIVEF-KADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHTTTTCCCSEE-ECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHhhCCceeEE-ECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            23445556667777 77654   2332    1234456667888888877654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.22  E-value=0.00073  Score=46.63  Aligned_cols=56  Identities=21%  Similarity=0.342  Sum_probs=34.6

Q ss_pred             EEEccCCcCC-CccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCc
Q 038699           25 ELHLSSNQLS-GEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLS   82 (237)
Q Consensus        25 ~L~L~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~   82 (237)
                      .++.+++.++ ..+|..+.  ++|++|+|++|.|+...+..|..+++|+.|+|.+|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5566666665 23343221  35777777777777555556667777777777777664

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.89  E-value=0.0026  Score=43.84  Aligned_cols=56  Identities=20%  Similarity=0.297  Sum_probs=35.0

Q ss_pred             EEeccCCccc-ccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCCccc
Q 038699           49 TLSLNGNNIS-GQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLI  106 (237)
Q Consensus        49 ~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~  106 (237)
                      .++.+++.++ ..+|..+.  ++|++|+|++|.|+...+..|..+++|+.|+|.+|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5566666654 23443221  35777777777777555556677777777777777654

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=91.65  E-value=0.65  Score=30.01  Aligned_cols=49  Identities=18%  Similarity=0.232  Sum_probs=34.2

Q ss_pred             CCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCC
Q 038699            6 GNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGN   55 (237)
Q Consensus         6 ~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n   55 (237)
                      |..++.+...+|.+|.+|+.+.+..+ ++.....+|.++.+|+.+.+...
T Consensus         5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred             CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence            45666677777888888888777765 33355667777777777777653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	237
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-20
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-19
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-19
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.004
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-16
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-12
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-10
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-11
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-11
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-08
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-06
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	4e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	8e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	1e-06
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.002
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	4e-06
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	1e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	5e-06
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	4e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	6e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	4e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	8e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	8e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	9e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	6e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	6e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	8e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	2e-04

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 87.4 bits (215), Expect = 1e-20
 Identities = 52/196 (26%), Positives = 78/196 (39%), Gaps = 33/196 (16%)

Query: 1   MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ 60
            L    N I    P  I +   L EL L+ NQL       + +LT L+ L L  N IS  
Sbjct: 201 SLIATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNL 256

Query: 61  IPEEIGGLLNLDSLDLSMNRLSGPIP--------------------NQIGELRDLRILNL 100
            P  + GL  L  L L  N++S   P                    + I  L++L  L L
Sbjct: 257 AP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL 314

Query: 101 SQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPA 160
             NN+    P    +L  LQ L   + N ++    + L  LT +  L+  HN +S   P 
Sbjct: 315 YFNNISDISPV--SSLTKLQRL-FFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP- 368

Query: 161 SLSSMLSLVAVNLSYN 176
            L+++  +  + L+  
Sbjct: 369 -LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 82.4 bits (202), Expect = 6e-19
 Identities = 46/185 (24%), Positives = 78/185 (42%), Gaps = 29/185 (15%)

Query: 18  GSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLS 77
             L+ L  L  ++NQ+S   P  I   T L  LSLNGN +       +  L NL  LDL+
Sbjct: 194 AKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLA 249

Query: 78  MNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQ-------------- 123
            N++S   P  +  L  L  L L  N +    P      +   +L               
Sbjct: 250 NNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLK 307

Query: 124 -----DLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 178
                 L +N+++   P  +  LT+LQ L  ++N +S    +SL+++ ++  ++  +N +
Sbjct: 308 NLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQI 363

Query: 179 EGPLP 183
               P
Sbjct: 364 SDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.8 bits (107), Expect = 2e-06
 Identities = 16/86 (18%), Positives = 39/86 (45%), Gaps = 6/86 (6%)

Query: 19  SLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSM 78
           +L++ ++  L    ++  +     +L +++TL  +   I     + +  L NL  ++ S 
Sbjct: 20  ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSN 75

Query: 79  NRLSGPIPNQIGELRDLRILNLSQNN 104
           N+L+   P  +  L  L  + ++ N 
Sbjct: 76  NQLTDITP--LKNLTKLVDILMNNNQ 99

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.8 bits (107), Expect = 2e-06
 Identities = 44/147 (29%), Positives = 62/147 (42%), Gaps = 11/147 (7%)

Query: 40  HIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILN 99
            +  LT L +L    N IS   P  I    NLD L L+ N+L       +  L +L  L+
Sbjct: 192 VLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKDI--GTLASLTNLTDLD 247

Query: 100 LSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIP 159
           L+ N +    P     L  L +L  L  N ++   P  L  LT L +L L+ N L    P
Sbjct: 248 LANNQISNLAPL--SGLTKLTEL-KLGANQISNISP--LAGLTALTNLELNENQLEDISP 302

Query: 160 ASLSSMLSLVAVNLSYNNLEGPLPDGS 186
            S    L+ +   L +NN+    P  S
Sbjct: 303 ISNLKNLTYL--TLYFNNISDISPVSS 327

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 1e-04
 Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 9/87 (10%)

Query: 92  LRDLRILNLSQNNLIGTIPF-QIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLS 150
           L +     L + N+  T+    +  +  L     L   S+ G     +  L  L  +N S
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQTDLDQVTTL-QADRLGIKSIDG-----VEYLNNLTQINFS 74

Query: 151 HNNLSGEIPASLSSMLSLVAVNLSYNN 177
           +N L+   P  L ++  LV + ++ N 
Sbjct: 75  NNQLTDITP--LKNLTKLVDILMNNNQ 99

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 81.7 bits (200), Expect = 5e-19
 Identities = 72/260 (27%), Positives = 105/260 (40%), Gaps = 51/260 (19%)

Query: 2   LGLAGNSIGGK--IPAEIGSLSQLVELHLSSN-QLSGEIPAHIGNLTELSTLSLNGNNIS 58
           L L+G ++     IP+ + +L  L  L++     L G IP  I  LT+L  L +   N+S
Sbjct: 55  LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114

Query: 59  GQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVG 118
           G IP+ +  +  L +LD S N LSG +P  I  L +L  +    N + G IP   G+   
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174

Query: 119 LQDLQDLSYNSLTGEIPAQLGKLTRLQSLN------------------------------ 148
           L     +S N LTG+IP     L                                     
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234

Query: 149 ----------------LSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQ 192
                           L +N + G +P  L+ +  L ++N+S+NNL G +P G       
Sbjct: 235 FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFD 294

Query: 193 SSAFTNNKDLCGKVQGLRPC 212
            SA+ NNK LCG    L  C
Sbjct: 295 VSAYANNKCLCGSP--LPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 49.4 bits (116), Expect = 9e-08
 Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 4/139 (2%)

Query: 18  GSLSQLVELHLSSNQLSG--EIPAHIGNLTELSTLSLNGN-NISGQIPEEIGGLLNLDSL 74
               ++  L LS   L     IP+ + NL  L+ L + G  N+ G IP  I  L  L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 75  DLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEI 134
            ++   +SG IP+ + +++ L  L+ S N L GT+P  I + +          N ++G I
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS-LPNLVGITFDGNRISGAI 165

Query: 135 PAQLGKLTRLQSLNLSHNN 153
           P   G  ++L +      N
Sbjct: 166 PDSYGSFSKLFTSMTISRN 184

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 35.5 bits (80), Expect = 0.004
 Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 2/124 (1%)

Query: 87  NQIGELRDLRILNLSQNNLIG--TIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRL 144
           +   +   +  L+LS  NL     IP  + NL  L  L     N+L G IP  + KLT+L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 145 QSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCG 204
             L ++H N+SG IP  LS + +LV ++ SYN L G LP       +      +   + G
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 205 KVQG 208
            +  
Sbjct: 164 AIPD 167

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (181), Expect = 2e-16
 Identities = 45/159 (28%), Positives = 64/159 (40%), Gaps = 5/159 (3%)

Query: 22  QLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL 81
            L  L+L  N L         +L  L+ L L+GN IS        GL +LD L L  NR+
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

Query: 82  SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKL 141
           +   P+   +L  L  L L  NNL       +  L  LQ L  L+ N    +  A     
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL-RLNDNPWVCDCRA-RPLW 247

Query: 142 TRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEG 180
             LQ    S + +   +P  L+         L+ N+L+G
Sbjct: 248 AWLQKFRGSSSEVPCSLPQRLAGRDLK---RLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (161), Expect = 9e-14
 Identities = 36/153 (23%), Positives = 54/153 (35%), Gaps = 5/153 (3%)

Query: 4   LAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPE 63
           L  N++          L  L  L L  N++S         L  L  L L+ N ++   P 
Sbjct: 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195

Query: 64  EIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQ 123
               L  L +L L  N LS      +  LR L+ L L+ N  +            LQ   
Sbjct: 196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKF- 253

Query: 124 DLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSG 156
             S + +   +P +   L       L+ N+L G
Sbjct: 254 RGSSSEVPCSLPQR---LAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (137), Expect = 2e-10
 Identities = 51/227 (22%), Positives = 74/227 (32%), Gaps = 26/227 (11%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQ-------------------------LSGE 36
           + L GN I     A   +   L  L L SN                          L   
Sbjct: 37  IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96

Query: 37  IPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLR 96
            PA    L  L TL L+   +    P    GL  L  L L  N L     +   +L +L 
Sbjct: 97  DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 156

Query: 97  ILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSG 156
            L L  N +          L  L     L  N +    P     L RL +L L  NNLS 
Sbjct: 157 HLFLHGNRISSVPERAFRGLHSLD-RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215

Query: 157 EIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLC 203
               +L+ + +L  + L+ N          +++  Q    ++++  C
Sbjct: 216 LPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPC 262

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (135), Expect = 3e-10
 Identities = 34/132 (25%), Positives = 51/132 (38%), Gaps = 5/132 (3%)

Query: 1   MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ 60
            L L GN I          L  L  L L  N+++   P    +L  L TL L  NN+S  
Sbjct: 157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 216

Query: 61  IPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQ 120
             E +  L  L  L L+ N               L+    S + +  ++P ++      +
Sbjct: 217 PTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAG----R 271

Query: 121 DLQDLSYNSLTG 132
           DL+ L+ N L G
Sbjct: 272 DLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 2e-09
 Identities = 39/191 (20%), Positives = 52/191 (27%), Gaps = 29/191 (15%)

Query: 19  SLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSM 78
                V        L   +P  I   ++   + L+GN IS           NL  L L  
Sbjct: 9   YNEPKVTTSCPQQGLQ-AVPVGIPAASQ--RIFLHGNRISHVPAASFRACRNLTILWLHS 65

Query: 79  NR-------------------------LSGPIPNQIGELRDLRILNLSQNNLIGTIPFQI 113
           N                          L    P     L  L  L+L +  L    P   
Sbjct: 66  NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF 125

Query: 114 GNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNL 173
             L  LQ    L  N+L          L  L  L L  N +S     +   + SL  + L
Sbjct: 126 RGLAALQY-LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184

Query: 174 SYNNLEGPLPD 184
             N +    P 
Sbjct: 185 HQNRVAHVHPH 195

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.5 bits (179), Expect = 5e-16
 Identities = 35/173 (20%), Positives = 68/173 (39%), Gaps = 7/173 (4%)

Query: 12  KIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNL 71
           K+P ++        L L +N+++        NL  L TL L  N IS   P     L+ L
Sbjct: 24  KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 72  DSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLT 131
           + L LS N+L          L++LR+       +  ++   +  ++ ++   +      +
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN--PLKSS 139

Query: 132 GEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPD 184
           G        + +L  + ++  N++  IP  L    SL  ++L  N +      
Sbjct: 140 GIENGAFQGMKKLSYIRIADTNIT-TIPQGLPP--SLTELHLDGNKITKVDAA 189

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.8 bits (172), Expect = 5e-15
 Identities = 42/217 (19%), Positives = 78/217 (35%), Gaps = 5/217 (2%)

Query: 1   MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ 60
           +L L  N I      +  +L  L  L L +N++S   P     L +L  L L+ N +   
Sbjct: 35  LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 94

Query: 61  IPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQ 120
             +    L  L   +  + ++   + N + ++  +  L  +     G        +  L 
Sbjct: 95  PEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSSGIENGAFQGMKKLS 153

Query: 121 DLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEG 180
               ++  ++T  IP  L     L  L+L  N ++    ASL  + +L  + LS+N++  
Sbjct: 154 -YIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 209

Query: 181 PLPDGSVFSSSQSSAFTNNKDLCGKVQGLRPCNALST 217
                   +        NN  L     GL     +  
Sbjct: 210 VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQV 246

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.1 bits (139), Expect = 1e-10
 Identities = 36/167 (21%), Positives = 69/167 (41%), Gaps = 11/167 (6%)

Query: 19  SLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSM 78
           +   +VEL  +  + SG        + +LS + +   NI+  IP+ +    +L  L L  
Sbjct: 124 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDG 180

Query: 79  NRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQL 138
           N+++      +  L +L  L LS N++       + N   L++L   +      ++P  L
Sbjct: 181 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK--LVKVPGGL 238

Query: 139 GKLTRLQSLNLSHNNLSG------EIPASLSSMLSLVAVNLSYNNLE 179
                +Q + L +NN+S         P   +   S   V+L  N ++
Sbjct: 239 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.9 bits (115), Expect = 1e-07
 Identities = 35/158 (22%), Positives = 62/158 (39%), Gaps = 22/158 (13%)

Query: 18  GSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLS 77
           G    L ELHL  N+++    A +  L  L+ L L+ N+IS      +    +L  L L+
Sbjct: 168 GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 227

Query: 78  MNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQ 137
            N+L   +P  + + + ++++ L  NN+                    +  S     P  
Sbjct: 228 NNKLV-KVPGGLADHKYIQVVYLHNNNIS-------------------AIGSNDFCPPGY 267

Query: 138 LGKLTRLQSLNLSHNNLS-GEI-PASLSSMLSLVAVNL 173
             K      ++L  N +   EI P++   +    AV L
Sbjct: 268 NTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 62.9 bits (151), Expect = 3e-12
 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 9/93 (9%)

Query: 7   NSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIG 66
           N+   +I +       L EL++S+N+L  E+PA    L     L  + N+++ ++PE   
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHLA-EVPELPQ 324

Query: 67  GLLNLDSLDLSMNRLSGPIPNQIGELRDLRILN 99
              NL  L +  N L    P+    + DLR+ +
Sbjct: 325 ---NLKQLHVEYNPLRE-FPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 56.4 bits (134), Expect = 5e-10
 Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 10/93 (10%)

Query: 76  LSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIP 135
             +N  S  I +       L  LN+S N LI  +P     L  L      S+N L  E+P
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL----IASFNHLA-EVP 320

Query: 136 AQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSL 168
                L   + L++ +N L  E P    S+  L
Sbjct: 321 ELPQNL---KQLHVEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.9 bits (125), Expect = 7e-09
 Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 10/92 (10%)

Query: 27  HLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIP 86
               N  S EI +       L  L+++ N +  ++P        L+ L  S N L+  +P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLAE-VP 320

Query: 87  NQIGELRDLRILNLSQNNL--IGTIPFQIGNL 116
                 ++L+ L++  N L     IP  + +L
Sbjct: 321 E---LPQNLKQLHVEYNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.8 bits (117), Expect = 9e-08
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 10/86 (11%)

Query: 99  NLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEI 158
               N     I         L++L ++S N L  E+PA   +L RL     S N+L+ E+
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEEL-NVSNNKLI-ELPALPPRLERL---IASFNHLA-EV 319

Query: 159 PASLSSMLSLVAVNLSYNNLEGPLPD 184
           P    ++  L   ++ YN L    PD
Sbjct: 320 PELPQNLKQL---HVEYNPLRE-FPD 341

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.9 bits (112), Expect = 3e-07
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 9/70 (12%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L ++ N +  ++PA    L     L  S N L+ E+P    NL +   L +  N +  + 
Sbjct: 289 LNVSNNKLI-ELPALPPRLE---RLIASFNHLA-EVPELPQNLKQ---LHVEYNPLR-EF 339

Query: 62  PEEIGGLLNL 71
           P+    + +L
Sbjct: 340 PDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.9 bits (99), Expect = 1e-05
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 8/63 (12%)

Query: 21 SQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR 80
           Q  EL L++  LS  +P    +L     L  + N+++ ++PE      +L SL +  N 
Sbjct: 38 RQAHELELNNLGLS-SLPELPPHLES---LVASCNSLT-ELPELPQ---SLKSLLVDNNN 89

Query: 81 LSG 83
          L  
Sbjct: 90 LKA 92

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.4 bits (90), Expect = 2e-04
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 123 QDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 179
                N+ + EI +       L+ LN+S+N L  E+PA    +  L     S+N+L 
Sbjct: 265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL---IASFNHLA 317

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 2e-04
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 8/57 (14%)

Query: 124 DLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEG 180
           +L+   L+  +P     L   +SL  S N+L+ E+P       SL ++ +  NNL+ 
Sbjct: 44  ELNNLGLS-SLPELPPHL---ESLVASCNSLT-ELPELPQ---SLKSLLVDNNNLKA 92

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 3e-04
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 6/62 (9%)

Query: 93  RDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHN 152
           R    L L+   L  ++P    +L  L      S NSLT E+P     L  L   N +  
Sbjct: 38  RQAHELELNNLGL-SSLPELPPHLESL----VASCNSLT-ELPELPQSLKSLLVDNNNLK 91

Query: 153 NL 154
            L
Sbjct: 92  AL 93

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 3e-04
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 47  LSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLI 106
              L LN   +S  +PE      +L+SL  S N L+  +P     L+ L + N +   L 
Sbjct: 40  AHELELNNLGLS-SLPELPP---HLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALS 94

Query: 107 GTIP 110
              P
Sbjct: 95  DLPP 98

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.7 bits (143), Expect = 2e-11
 Identities = 34/186 (18%), Positives = 57/186 (30%), Gaps = 23/186 (12%)

Query: 13  IPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLD 72
           +P ++        LHLS N L     A +   T L+ L+L+   ++    +    +L   
Sbjct: 25  LPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL 82

Query: 73  SLDLSMNRLSGP--------------------IPNQIGELRDLRILNLSQNNLIGTIPFQ 112
            L  +  +                        +P               + N + T+P  
Sbjct: 83  DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG 142

Query: 113 IGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVN 172
           +       +   L+ N+LT      L  L  L +L L  N+L   IP        L    
Sbjct: 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAF 201

Query: 173 LSYNNL 178
           L  N  
Sbjct: 202 LHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 3e-06
 Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 3/65 (4%)

Query: 40  HIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILN 99
            +  +     ++ +  N++  +P ++    +   L LS N L       +     L  LN
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 100 LSQNN 104
           L +  
Sbjct: 62  LDRAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 3e-06
 Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 4/66 (6%)

Query: 112 QIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAV 171
           ++  +    ++ +    +LT  +P  L K      L+LS N L     A+L     L  +
Sbjct: 5   EVSKVASHLEV-NCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 172 NLSYNN 177
           NL    
Sbjct: 61  NLDRAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 2e-05
 Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 4/66 (6%)

Query: 88  QIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSL 147
           ++ ++     +N  + NL   +P  +        L  LS N L     A L   TRL  L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPKD--TTIL-HLSENLLYTFSLATLMPYTRLTQL 60

Query: 148 NLSHNN 153
           NL    
Sbjct: 61  NLDRAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 2e-04
 Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 1/49 (2%)

Query: 7   NSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGN 55
           N++       +  L  L  L L  N L   IP        L    L+GN
Sbjct: 158 NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.6 bits (142), Expect = 5e-11
 Identities = 20/113 (17%), Positives = 36/113 (31%), Gaps = 22/113 (19%)

Query: 69  LNLDSLDLSMNRLS-GPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSY 127
           L++ SLD+    LS       +  L+  +++ L    L                 +D+S 
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL------------TEARCKDIS- 48

Query: 128 NSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEG 180
                   + L     L  LNL  N L       +   L   +  +   +L+ 
Sbjct: 49  --------SALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (132), Expect = 1e-09
 Identities = 15/92 (16%), Positives = 33/92 (35%), Gaps = 10/92 (10%)

Query: 23  LVELHLSSNQLSGEIPAHI-GNLTELSTLSLNGNNISGQIPEEIGGLL----NLDSLDLS 77
           +  L +   +LS    A +   L +   + L+   ++    ++I   L     L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 78  MNRLSGPIPNQIGEL-----RDLRILNLSQNN 104
            N L     + + +        ++ L+L    
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (127), Expect = 4e-09
 Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 13/91 (14%)

Query: 21  SQLVELHLSSNQLSGE----IPAHIGNLTELSTLSLNGNNISGQIPEEIGGLL-----NL 71
           S L  L L+   +S      + A +     L  L L+ N +      ++   +      L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 72  DSLDLSMNRLSGPIPNQIGELR----DLRIL 98
           + L L     S  + +++  L      LR++
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (124), Expect = 1e-08
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 8/80 (10%)

Query: 95  LRILNLSQNNLIGTIPFQIGN-LVGLQDLQ--DLSYNSLTGEIPAQLGK-----LTRLQS 146
           LR+L L+  ++  +    +   L+    L+  DLS N L      QL +        L+ 
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430

Query: 147 LNLSHNNLSGEIPASLSSML 166
           L L     S E+   L ++ 
Sbjct: 431 LVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (121), Expect = 3e-08
 Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 5/92 (5%)

Query: 2  LGLAGNSIGGKIPAEI-GSLSQLVELHLSSNQLSGE----IPAHIGNLTELSTLSLNGNN 56
          L +    +     AE+   L Q   + L    L+      I + +     L+ L+L  N 
Sbjct: 7  LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 57 ISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQ 88
          +       +   L   S  +    L       
Sbjct: 67 LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (116), Expect = 1e-07
 Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 9/77 (11%)

Query: 2   LGLAGNSIGGK----IPAEIGSLSQLVELHLSSNQLSGEIPAHIG-----NLTELSTLSL 52
           L LA   +       + A + +   L EL LS+N L       +          L  L L
Sbjct: 374 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVL 433

Query: 53  NGNNISGQIPEEIGGLL 69
                S ++ + +  L 
Sbjct: 434 YDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 9e-07
 Identities = 14/112 (12%), Positives = 31/112 (27%), Gaps = 22/112 (19%)

Query: 46  ELSTLSLNGNNIS-GQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNN 104
           ++ +L +    +S  +  E +  L     + L    L+      I               
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA------------ 50

Query: 105 LIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSG 156
                   +     L +L +L  N L       + +  +  S  +   +L  
Sbjct: 51  --------LRVNPALAEL-NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (108), Expect = 1e-06
 Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 9/88 (10%)

Query: 38  PAHIGNLTELSTLSLNGNNISGQIPEEIGGLL----NLDSLDLSMNRLSGPIPNQIGE-L 92
                  + L  L L   ++S      +   L    +L  LDLS N L      Q+ E +
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 93  RD----LRILNLSQNNLIGTIPFQIGNL 116
           R     L  L L        +  ++  L
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 2e-06
 Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 9/70 (12%)

Query: 124 DLSYNSLTGE----IPAQLGKLTRLQSLNLSHNNLSGEIPASLSSML-----SLVAVNLS 174
            L+   ++      + A L     L+ L+LS+N L       L   +      L  + L 
Sbjct: 375 WLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLY 434

Query: 175 YNNLEGPLPD 184
                  + D
Sbjct: 435 DIYWSEEMED 444

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.7 bits (118), Expect = 1e-08
 Identities = 33/121 (27%), Positives = 44/121 (36%), Gaps = 9/121 (7%)

Query: 49  TLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGT 108
            L L   +++  +   +  LL +  LDLS NRL    P     L  LR L + Q +    
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP----ALAALRCLEVLQASDNAL 55

Query: 109 IPFQIGNLVGLQDLQDLSYNSLTG-EIPAQLGKLTRLQSLNLSHNNLSGE--IPASLSSM 165
                   +       L  N L        L    RL  LNL  N+L  E  I   L+ M
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

Query: 166 L 166
           L
Sbjct: 116 L 116

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.0 bits (111), Expect = 1e-07
 Identities = 32/124 (25%), Positives = 49/124 (39%), Gaps = 7/124 (5%)

Query: 26  LHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPI 85
           LHL+   L+  +  H+  L  ++ L L+ N +    P  +  L  L+ L  S N L    
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVD 59

Query: 86  PNQIGELRDLRILNLSQNNLIGTIPFQ-IGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRL 144
                    L+ L L  N L  +   Q + +   L  L +L  NSL  E   Q      L
Sbjct: 60  GVANL--PRLQELLLCNNRLQQSAAIQPLVSCPRLVLL-NLQGNSLCQEEGIQERLAEML 116

Query: 145 QSLN 148
            S++
Sbjct: 117 PSVS 120

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.5 bits (107), Expect = 4e-07
 Identities = 29/126 (23%), Positives = 47/126 (37%), Gaps = 6/126 (4%)

Query: 1   MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ 60
           +L LA   +   +   +  L  +  L LS N+L    PA +  L  L    L  ++ + +
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEV--LQASDNALE 56

Query: 61  IPEEIGGLLNLDSLDLSMNRL-SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGL 119
             + +  L  L  L L  NRL        +     L +LNL  N+L      Q      L
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

Query: 120 QDLQDL 125
             +  +
Sbjct: 117 PSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.9 bits (103), Expect = 1e-06
 Identities = 31/108 (28%), Positives = 45/108 (41%), Gaps = 7/108 (6%)

Query: 74  LDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGE 133
           L L+   L+  +   + +L  +  L+LS N L    P     L  L+ L+ L  +    E
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP----ALAALRCLEVLQASDNALE 56

Query: 134 IPAQLGKLTRLQSLNLSHNNL-SGEIPASLSSMLSLVAVNLSYNNLEG 180
               +  L RLQ L L +N L        L S   LV +NL  N+L  
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 1e-07
 Identities = 14/98 (14%), Positives = 34/98 (34%), Gaps = 3/98 (3%)

Query: 26  LHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSG-P 84
           L L+   L  ++   + +   ++      + +   + E       +  +DLS + +    
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIA-FRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVST 62

Query: 85  IPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDL 122
           +   + +   L+ L+L    L   I   +     L  L
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 100

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 2e-06
 Identities = 34/216 (15%), Positives = 66/216 (30%), Gaps = 35/216 (16%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGE-IPAHIGNLTELSTLSLNGNNISGQ 60
                + +   +  E  S  ++  + LS++ +    +   +   ++L  LSL G  +S  
Sbjct: 28  FRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDP 86

Query: 61  IPEEIGGLLNLDSLDLS--MNRLSGPIPNQIGELRDLRILN------------------- 99
           I   +    NL  L+LS         +   +     L  LN                   
Sbjct: 87  IVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV 146

Query: 100 -----------LSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLN 148
                        +N     +   +     L  L       L  +   +  +L  LQ L+
Sbjct: 147 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLS 206

Query: 149 LSH-NNLSGEIPASLSSMLSLVAVNLSYNNLEGPLP 183
           LS   ++  E    L  + +L  + +     +G L 
Sbjct: 207 LSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 3e-05
 Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 4/89 (4%)

Query: 96  RILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLS 155
           + L+L+  NL   +    G L+    +      S   +  A+     R+Q ++LS++ + 
Sbjct: 3   QTLDLTGKNLHPDV---TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE 59

Query: 156 GE-IPASLSSMLSLVAVNLSYNNLEGPLP 183
              +   LS    L  ++L    L  P+ 
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIV 88

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 3e-04
 Identities = 34/214 (15%), Positives = 61/214 (28%), Gaps = 34/214 (15%)

Query: 2   LGLAGNSIGGK-IPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSL--NGNNIS 58
           + L+ + I    +   +   S+L  L L   +LS  I   +   + L  L+L        
Sbjct: 51  MDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE 110

Query: 59  GQIPEEIGGLLNLDSLDLSMNR----------------------LSGPIPNQIGELRDLR 96
             +   +     LD L+LS                         LSG   N         
Sbjct: 111 FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL 170

Query: 97  ILNLSQN---------NLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSL 147
           +                L      +   L  LQ L       +  E   +LG++  L++L
Sbjct: 171 VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTL 230

Query: 148 NLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGP 181
            +      G +     ++  L      +  +  P
Sbjct: 231 QVFGIVPDGTLQLLKEALPHLQINCSHFTTIARP 264

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (105), Expect = 1e-06
 Identities = 21/134 (15%), Positives = 43/134 (32%), Gaps = 6/134 (4%)

Query: 20  LSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMN 79
             +  EL L   ++   I      L +   +  + N I  +  +    L  L +L ++ N
Sbjct: 17  AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLLVNNN 73

Query: 80  RLSGPIPNQIGELRDLRILNLSQ---NNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPA 136
           R+          L DL  L L+      L    P      +    +      +       
Sbjct: 74  RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLY 133

Query: 137 QLGKLTRLQSLNLS 150
            + K+ +++ L+  
Sbjct: 134 VIYKVPQVRVLDFQ 147

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 1e-05
 Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 4/83 (4%)

Query: 30  SNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQI 89
           + +L  +   +  N      L L G  I   I      L   D++D S N +   +    
Sbjct: 4   TAELIEQAAQYT-NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDGF- 59

Query: 90  GELRDLRILNLSQNNLIGTIPFQ 112
             LR L+ L ++ N +       
Sbjct: 60  PLLRRLKTLLVNNNRICRIGEGL 82

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 1e-04
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 3/51 (5%)

Query: 104 NLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNL 154
            LI     Q  N V  ++L DL    +   I      L +  +++ S N +
Sbjct: 6   ELIEQAA-QYTNAVRDREL-DLRGYKIP-VIENLGATLDQFDAIDFSDNEI 53

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 4e-04
 Identities = 21/117 (17%), Positives = 37/117 (31%), Gaps = 4/117 (3%)

Query: 68  LLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSY 127
            +    LDL   ++   I N    L     ++ S +N I  +      L  L+ L  ++ 
Sbjct: 17  AVRDRELDLRGYKIPV-IENLGATLDQFDAIDFS-DNEIRKLDGF-PLLRRLKTLL-VNN 72

Query: 128 NSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPD 184
           N +          L  L  L L++N+L         + L  +       N       
Sbjct: 73  NRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 129

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 8e-04
 Identities = 27/133 (20%), Positives = 50/133 (37%), Gaps = 4/133 (3%)

Query: 2   LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
           L L G  I   I     +L Q   +  S N++          L  L TL +N N I    
Sbjct: 23  LDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLLVNNNRICRIG 79

Query: 62  PEEIGGLLNLDSLDLSMNRLSG-PIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQ 120
                 L +L  L L+ N L      + +  L+ L  L + +N +     +++  +  + 
Sbjct: 80  EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVP 139

Query: 121 DLQDLSYNSLTGE 133
            ++ L +  +  +
Sbjct: 140 QVRVLDFQKVKLK 152

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 1e-06
 Identities = 26/149 (17%), Positives = 43/149 (28%), Gaps = 5/149 (3%)

Query: 19  SLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEI-GGLLNLDSLDLS 77
                  L  + +    +   H+     L+ L +        +      GL  L +L + 
Sbjct: 6   CPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIV 64

Query: 78  MNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQ 137
            + L    P+       L  LNLS N L       +  L   +    LS N L      +
Sbjct: 65  KSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQE--LVLSGNPLHCSCALR 122

Query: 138 -LGKLTRLQSLNLSHNNLSGEIPASLSSM 165
            L +        +    L       L+ M
Sbjct: 123 WLQRWEEEGLGGVPEQKLQCHGQGPLAHM 151

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (80), Expect = 0.002
 Identities = 24/135 (17%), Positives = 45/135 (33%), Gaps = 2/135 (1%)

Query: 12  KIPAEIGSLSQLVELHLSSNQLSGEIPA-HIGNLTELSTLSLNGNNISGQIPEEIGGLLN 70
                +     L EL++ + Q    +    +  L EL  L++  + +    P+       
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 71  LDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSL 130
           L  L+LS N L   +  +  +   L+ L LS N L  +   +       + L  +    L
Sbjct: 82  LSRLNLSFNALES-LSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKL 140

Query: 131 TGEIPAQLGKLTRLQ 145
                  L  +    
Sbjct: 141 QCHGQGPLAHMPNAS 155

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 4e-06
 Identities = 33/148 (22%), Positives = 54/148 (36%), Gaps = 6/148 (4%)

Query: 60  QIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGL 119
           Q+   +    +     L +  L       +       +LN   +++  T+     N+  L
Sbjct: 11  QLKLIMSKRYDGSQQALDLKGL--RSDPDLVAQNIDVVLNRR-SSMAATLRIIEENIPEL 67

Query: 120 QDLQDLSYNSLTG--EIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNN 177
             L +LS N L    ++ + + K   L+ LNLS N L  E        L L  + L  N+
Sbjct: 68  LSL-NLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNS 126

Query: 178 LEGPLPDGSVFSSSQSSAFTNNKDLCGK 205
           L     D S + S+    F     L G 
Sbjct: 127 LSDTFRDQSTYISAIRERFPKLLRLDGH 154

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 1e-04
 Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 3/101 (2%)

Query: 12  KIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ--IPEEIGGLL 69
           +   ++ + +  V L+  S+  +  +     N+ EL +L+L+ N +     +   +    
Sbjct: 33  RSDPDLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAP 91

Query: 70  NLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIP 110
           NL  L+LS N L         +   L  L L  N+L  T  
Sbjct: 92  NLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFR 132

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.6 bits (101), Expect = 5e-06
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 4/94 (4%)

Query: 13  IPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLD 72
                  L QL  L+L  NQ+S  +P    +L  L++L+L  N  +            L 
Sbjct: 94  SNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC-NCHLAWFAEWLR 152

Query: 73  SLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLI 106
              L+        P+   ++RD++I +L  +   
Sbjct: 153 KKSLNGGAARCGAPS---KVRDVQIKDLPHSEFK 183

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.9 bits (94), Expect = 4e-05
 Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 5/102 (4%)

Query: 53  NGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQ 112
             N I     +   GL  L +L+L  N++S  +P     L  L  LN    +        
Sbjct: 86  GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN--LASNPFNCNCH 143

Query: 113 IGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNL 154
           +         + L+  +     P+   K+  +Q  +L H+  
Sbjct: 144 LAWFAEWLRKKSLNGGAARCGAPS---KVRDVQIKDLPHSEF 182

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.1 bits (102), Expect = 6e-06
 Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 13/85 (15%)

Query: 4   LAGNSIGGKIPAEIG------SLSQLVELHLSSNQLSGEIPAHI-----GNLTELSTLSL 52
           L    +  +  A +           L  L L  N++  +    +       + +L  L L
Sbjct: 250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 309

Query: 53  NGNNIS--GQIPEEIGGLLNLDSLD 75
           NGN  S    + +EI  + +     
Sbjct: 310 NGNRFSEEDDVVDEIREVFSTRGRG 334

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.9 bits (99), Expect = 2e-05
 Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 13/86 (15%)

Query: 27  HLSSNQLSGEIPAHIGN------LTELSTLSLNGNNISGQIPEEI-----GGLLNLDSLD 75
            L+   LS    A + +         L TL L  N I       +       + +L  L+
Sbjct: 249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 308

Query: 76  LSMNRLS--GPIPNQIGELRDLRILN 99
           L+ NR S    + ++I E+   R   
Sbjct: 309 LNGNRFSEEDDVVDEIREVFSTRGRG 334

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.9 bits (99), Expect = 2e-05
 Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 8/89 (8%)

Query: 123 QDLSYNSLTGE----IPAQLGKLTRLQSLNLSHNNLSGE----IPASLSSMLSLVAVNLS 174
           + L  +++T E    + A L +   ++ + LS N +  E    +  +++S   L     S
Sbjct: 8   KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 175 YNNLEGPLPDGSVFSSSQSSAFTNNKDLC 203
                    +          A      L 
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLH 96

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.5 bits (90), Expect = 2e-04
 Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 12/82 (14%)

Query: 99  NLSQNNLIGTIPFQIGNLVGLQDLQ-----DLSYNSLTGEIPAQL-----GKLTRLQSLN 148
            L+   L       + +     +        L YN +  +    L      K+  L  L 
Sbjct: 249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 308

Query: 149 LSHNNLS--GEIPASLSSMLSL 168
           L+ N  S   ++   +  + S 
Sbjct: 309 LNGNRFSEEDDVVDEIREVFST 330

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.3 bits (87), Expect = 4e-04
 Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 11/68 (16%)

Query: 123 QDLSYNSLTGEIPAQLG------KLTRLQSLNLSHNNLSGEIPASLSSML-----SLVAV 171
             L+   L+    A +       +   LQ+L L +N +  +   +L +++      L+ +
Sbjct: 248 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 307

Query: 172 NLSYNNLE 179
            L+ N   
Sbjct: 308 ELNGNRFS 315

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.6 bits (85), Expect = 8e-04
 Identities = 13/97 (13%), Positives = 32/97 (32%), Gaps = 8/97 (8%)

Query: 26  LHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ----IPEEIGGLLNLDSLDLSMN-- 79
             +++      + A +     +  + L+GN I  +    + E I    +L+  + S    
Sbjct: 13  DAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT 71

Query: 80  -RLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGN 115
            R+   IP  +  L    +     + +  +       
Sbjct: 72  GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 108

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.6 bits (85), Expect = 8e-04
 Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 13/88 (14%)

Query: 52  LNGNNISGQIPEEIG------GLLNLDSLDLSMNRLSGPIPNQIGE-----LRDLRILNL 100
           LN   +S +    +         + L +L L  N +       +       + DL  L L
Sbjct: 250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 309

Query: 101 SQNNL--IGTIPFQIGNLVGLQDLQDLS 126
           + N       +  +I  +   +   +L 
Sbjct: 310 NGNRFSEEDDVVDEIREVFSTRGRGELD 337

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 36.4 bits (82), Expect = 0.002
 Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 7/66 (10%)

Query: 13 IPAEIGSLSQLVELHLSSNQLSGE----IPAHIGNLTELSTLSLNGN---NISGQIPEEI 65
          + A +     + E+ LS N +  E    +  +I +  +L     +      +  +IPE +
Sbjct: 23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 82

Query: 66 GGLLNL 71
            LL  
Sbjct: 83 RLLLQA 88

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 1e-05
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 40  HIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILN 99
            + NL++L+TL  + N IS   P  +  L NL  + L  N++S   P  +    +L I+ 
Sbjct: 168 PLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVT 223

Query: 100 LS 101
           L+
Sbjct: 224 LT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.6 bits (96), Expect = 3e-05
 Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 5/66 (7%)

Query: 86  PNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQ 145
              +  L  L  L    N +    P    +L  L ++  L  N ++   P  L   + L 
Sbjct: 166 LTPLANLSKLTTLKADDNKISDISPL--ASLPNLIEV-HLKNNQISDVSP--LANTSNLF 220

Query: 146 SLNLSH 151
            + L++
Sbjct: 221 IVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 9e-05
 Identities = 13/63 (20%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 19 SLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSM 78
          +L+  +++    + ++  +     +L  ++TLS  G  ++    E +  L NL  L+L  
Sbjct: 17 ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 79 NRL 81
          N++
Sbjct: 73 NQI 75

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 126 SYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLS 174
             N ++   P  L  L  L  ++L +N +S   P  L++  +L  V L+
Sbjct: 181 DDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 3e-04
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 6   GNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLN 53
            N I    P  + SL  L+E+HL +NQ+S   P  + N + L  ++L 
Sbjct: 182 DNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 5/65 (7%)

Query: 62  PEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
              +  L  L +L    N++S   P  +  L +L  ++L  N +    P    N   L  
Sbjct: 166 LTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPL--ANTSNLFI 221

Query: 122 LQDLS 126
           +  L+
Sbjct: 222 V-TLT 225

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 2e-05
 Identities = 30/205 (14%), Positives = 67/205 (32%), Gaps = 49/205 (23%)

Query: 13  IPAEIG------SLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIG 66
           +P  I       + ++ ++ +L    ++  +      L  +  +  N ++I       I 
Sbjct: 10  VPTPIKQIFSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQ 65

Query: 67  GLLNLDSLDLSMNRLSG-------------------------------PIPNQIGELRDL 95
            L N+  L L+ N+L+                                     +      
Sbjct: 66  YLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGIS 125

Query: 96  RILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQL------GKLTRLQSLNL 149
            I  L     + ++      +  +  L  L+          Q+        LT+LQ+L L
Sbjct: 126 DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYL 185

Query: 150 SHNNLSGEIPASLSSMLSLVAVNLS 174
           S N++S ++  +L+ + +L  + L 
Sbjct: 186 SKNHIS-DLR-ALAGLKNLDVLELF 208

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 6e-05
 Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 11  GKIPAEI-GSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGN 55
            ++P ++    S  V L +S  ++       + NL +L   S    
Sbjct: 190 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 6e-05
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 4/53 (7%)

Query: 59  GQIPEEI-GGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIP 110
            ++P ++  G      LD+S  R+       +  L+ LR  +    NL   +P
Sbjct: 190 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNL-KKLP 239

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 8e-05
 Identities = 7/42 (16%), Positives = 15/42 (35%), Gaps = 2/42 (4%)

Query: 138 LGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 179
               +    L++S   +       L ++  L A +    NL+
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 1e-04
 Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 4/86 (4%)

Query: 74  LDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGE 133
           L L+ N +           +   +     NNL            G   L D+S   +   
Sbjct: 158 LWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL-DISRTRIHSL 216

Query: 134 IPAQLGKLTRLQSLNLSHNNLSGEIP 159
               L  L +L++ +    NL  ++P
Sbjct: 217 PSYGLENLKKLRARST--YNLK-KLP 239

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 0.001
 Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 124 DLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNN 177
               + +T EIP+ L        L      L      + S    L  + +S N+
Sbjct: 14  LCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND 64

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 0.002
 Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 3/65 (4%)

Query: 48  STLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIG 107
                  + ++ +IP ++    N   L   + +L            DL  + +SQN+++ 
Sbjct: 11  RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 67

Query: 108 TIPFQ 112
            I   
Sbjct: 68  VIEAD 72

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 0.002
 Identities = 7/49 (14%), Positives = 14/49 (28%), Gaps = 1/49 (2%)

Query: 30  SNQLSGEIPAHI-GNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLS 77
            N    E+P  +    +    L ++   I       +  L  L +    
Sbjct: 185 DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (80), Expect = 0.003
 Identities = 9/64 (14%), Positives = 22/64 (34%), Gaps = 3/64 (4%)

Query: 25 ELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGP 84
                ++++ EIP+ +        L      +         G  +L+ +++S N +   
Sbjct: 12 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 68

Query: 85 IPNQ 88
          I   
Sbjct: 69 IEAD 72

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 35/187 (18%), Positives = 67/187 (35%), Gaps = 42/187 (22%)

Query: 20  LSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMN 79
           L++ ++  L    ++  +     +L +++TL  +   I     + +  L NL  ++ S N
Sbjct: 17  LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNN 72

Query: 80  RLSGPI-------------------------------------PNQIGELRDLRILNLSQ 102
           +L+                                                   + NL++
Sbjct: 73  QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 132

Query: 103 NNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSG-EIPAS 161
             L       I  L GL  LQ L+++S        L  LT L+ L++S N +S   + A 
Sbjct: 133 LELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 192

Query: 162 LSSMLSL 168
           L+++ SL
Sbjct: 193 LTNLESL 199

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	237
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.94
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.93
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.87
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.85
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.81
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.81
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.8
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.8
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.79
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.79
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.78
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.78
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.78
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.74
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.72
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.67
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.66
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.66
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.65
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.63
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.54
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.5
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.48
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.47
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.43
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.43
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.42
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.35
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.28
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.14
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.91
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.78
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.71
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.62
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.16
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.09
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.78
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.65

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=5.4e-29  Score=199.36  Aligned_cols=208  Identities=35%  Similarity=0.567  Sum_probs=163.6

Q ss_pred             EEecCCcCCC--CCCcccCCCCCCcEEEccC-CcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccC
Q 038699            2 LGLAGNSIGG--KIPAEIGSLSQLVELHLSS-NQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSM   78 (237)
Q Consensus         2 L~l~~n~~~~--~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   78 (237)
                      |||+++++++  .+|+.+.++++|++|+|++ |.+++.+|..|.++++|++|++++|.+.+..+..+..+.+|+.++++.
T Consensus        55 L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~  134 (313)
T d1ogqa_          55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY  134 (313)
T ss_dssp             EEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCS
T ss_pred             EECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccccccc
Confidence            7888888887  4678888899999999986 788878888888899999999999888877777777777777777777


Q ss_pred             CcCcCcccccccCCCCCCEEEccCCcccccCCccccCccC----------------------------------------
Q 038699           79 NRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVG----------------------------------------  118 (237)
Q Consensus        79 n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~----------------------------------------  118 (237)
                      |.+...+|..+..++.++++++++|.+.+..|..+..+..                                        
T Consensus       135 N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~  214 (313)
T d1ogqa_         135 NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDAS  214 (313)
T ss_dssp             SEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCG
T ss_pred             ccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            7777667777777777777777777665555544444333                                        


Q ss_pred             --------ccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCCCccCC
Q 038699          119 --------LQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSS  190 (237)
Q Consensus       119 --------L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~  190 (237)
                              ++.+ ++.+|.+.+. +..+..+++|+.|++++|++++.+|..+..+++|++|++++|+++|.+|....+.+
T Consensus       215 ~~~~~~~~l~~l-~~~~~~l~~~-~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~  292 (313)
T d1ogqa_         215 VLFGSDKNTQKI-HLAKNSLAFD-LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQR  292 (313)
T ss_dssp             GGCCTTSCCSEE-ECCSSEECCB-GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGG
T ss_pred             cccccccccccc-cccccccccc-ccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCC
Confidence                    3333 4444444422 23466678999999999999989999999999999999999999999999888899


Q ss_pred             CccchhccCCcccccCCCCCCCC
Q 038699          191 SQSSAFTNNKDLCGKVQGLRPCN  213 (237)
Q Consensus       191 l~~~~l~~n~~l~~~~~~~~~C~  213 (237)
                      +..+++.+|+.+||.|  +..|+
T Consensus       293 L~~l~l~~N~~l~g~p--lp~c~  313 (313)
T d1ogqa_         293 FDVSAYANNKCLCGSP--LPACT  313 (313)
T ss_dssp             SCGGGTCSSSEEESTT--SSCCC
T ss_pred             CCHHHhCCCccccCCC--CCCCC
Confidence            9999999999999986  35674

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.3e-26  Score=177.87  Aligned_cols=196  Identities=26%  Similarity=0.243  Sum_probs=172.0

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL   81 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i   81 (237)
                      +|.++++++. +|+.+.  +++++|+|++|.+++..+.+|..+++|++|++++|.++. ++ .++.+++|++|++++|.+
T Consensus        15 v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~N~l   89 (266)
T d1p9ag_          15 VNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSHNQL   89 (266)
T ss_dssp             EECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCSSCC
T ss_pred             EEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccccccccccc
Confidence            5778889985 565553  579999999999997777889999999999999999984 44 457899999999999999


Q ss_pred             cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCcc
Q 038699           82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPAS  161 (237)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  161 (237)
                      . ..+..+..+++|+.|++++|.+....+..+..+.++..+ ++.+|.++...+..+..+++++.+++++|++++..+..
T Consensus        90 ~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L-~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~  167 (266)
T d1p9ag_          90 Q-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL-YLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL  167 (266)
T ss_dssp             S-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEE-ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTT
T ss_pred             c-ccccccccccccccccccccccceeeccccccccccccc-cccccccceeccccccccccchhcccccccccccCccc
Confidence            8 556788999999999999999987778888999999999 99999999788888889999999999999999888888


Q ss_pred             ccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCCcccc
Q 038699          162 LSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCG  204 (237)
Q Consensus       162 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~l~~  204 (237)
                      |..+++|++|++++|+++...+.....+.++.+++.+||+.|.
T Consensus       168 ~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         168 LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             cccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCCCC
Confidence            9999999999999999995444556778899999999999985

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.9e-25  Score=176.18  Aligned_cols=204  Identities=24%  Similarity=0.227  Sum_probs=177.3

Q ss_pred             CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEecc-CCcccccCcccccCCCCCCEEEccCC
Q 038699            1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLN-GNNISGQIPEEIGGLLNLDSLDLSMN   79 (237)
Q Consensus         1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n   79 (237)
                      +|+|++|.|+...+.+|.++++|++|++++|.+....+..+..+..++.+... .+.++...+..|..+++|++|++++|
T Consensus        36 ~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n  115 (284)
T d1ozna_          36 RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC  115 (284)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             EEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecCCc
Confidence            38899999998877889999999999999999987777778888888888764 45666666778899999999999999


Q ss_pred             cCcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccC
Q 038699           80 RLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIP  159 (237)
Q Consensus        80 ~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  159 (237)
                      .+....+..+....+|+.+++++|.++...+..+..+++|+.| ++++|.++...+.+|.++++|+.+++++|.+++..|
T Consensus       116 ~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L-~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~  194 (284)
T d1ozna_         116 GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL-FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP  194 (284)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE-ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             ccccccccccchhcccchhhhccccccccChhHhccccchhhc-ccccCcccccchhhhccccccchhhhhhccccccCh
Confidence            9886666778889999999999999987777788899999999 999999998888899999999999999999998889


Q ss_pred             ccccCCCCCCEEEcCCCcCcCCCCCC-CccCCCccchhccCCccccc
Q 038699          160 ASLSSMLSLVAVNLSYNNLEGPLPDG-SVFSSSQSSAFTNNKDLCGK  205 (237)
Q Consensus       160 ~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~l~~~~l~~n~~l~~~  205 (237)
                      ..|..+++|++|++++|++.+..+.. ...++++.+++.+|+..|..
T Consensus       195 ~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C  241 (284)
T d1ozna_         195 HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC  241 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred             hHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCc
Confidence            99999999999999999999766543 46778999999999988853

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.7e-24  Score=168.07  Aligned_cols=175  Identities=28%  Similarity=0.267  Sum_probs=159.1

Q ss_pred             CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699            1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR   80 (237)
Q Consensus         1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   80 (237)
                      +|||++|.|++..+.+|.++++|++|+|++|.++. ++ .+..+++|++|++++|+++ ..+..+..+++|+.|++++|.
T Consensus        35 ~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~  111 (266)
T d1p9ag_          35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNR  111 (266)
T ss_dssp             EEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSC
T ss_pred             EEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccccccccccc-ccccccccccccccccccccc
Confidence            48999999998888889999999999999999984 43 4678999999999999998 567788999999999999999


Q ss_pred             CcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCc
Q 038699           81 LSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPA  160 (237)
Q Consensus        81 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  160 (237)
                      +....+..+..+.++++|++++|.+....+..+..+++++.+ ++++|+++...+..|..+++|++|++++|.|+ .+|.
T Consensus       112 ~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l-~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~  189 (266)
T d1p9ag_         112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL-SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK  189 (266)
T ss_dssp             CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE-ECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred             cceeeccccccccccccccccccccceeccccccccccchhc-ccccccccccCccccccccccceeecccCCCc-ccCh
Confidence            987777788899999999999999997777888899999999 99999999888888999999999999999999 7788


Q ss_pred             cccCCCCCCEEEcCCCcCcC
Q 038699          161 SLSSMLSLVAVNLSYNNLEG  180 (237)
Q Consensus       161 ~~~~~~~L~~L~l~~n~l~~  180 (237)
                      .+..+++|+.|+|++|++..
T Consensus       190 ~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         190 GFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             TTTTTCCCSEEECCSCCBCC
T ss_pred             hHCCCCCCCEEEecCCCCCC
Confidence            88889999999999999874

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=6.8e-23  Score=162.92  Aligned_cols=201  Identities=23%  Similarity=0.318  Sum_probs=151.5

Q ss_pred             CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCc------------------
Q 038699            1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIP------------------   62 (237)
Q Consensus         1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------------------   62 (237)
                      +|+|++|+|+.+.+.+|.++++|++|++++|.+....+..|..+++|+.|++++|+++. +|                  
T Consensus        35 ~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~-l~~~~~~~l~~L~~~~n~l~  113 (305)
T d1xkua_          35 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMPKTLQELRVHENEIT  113 (305)
T ss_dssp             EEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSCCTTCCEEECCSSCCC
T ss_pred             EEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCc-Cccchhhhhhhhhccccchh
Confidence            48999999998777789999999999999999997778889999999999999987762 22                  


Q ss_pred             ------------------------------ccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCcc
Q 038699           63 ------------------------------EEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQ  112 (237)
Q Consensus        63 ------------------------------~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  112 (237)
                                                    ..+..+++|+.+++.+|.+. .++..  .+++|++|++++|......+..
T Consensus       114 ~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~--~~~~L~~L~l~~n~~~~~~~~~  190 (305)
T d1xkua_         114 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQG--LPPSLTELHLDGNKITKVDAAS  190 (305)
T ss_dssp             BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSS--CCTTCSEEECTTSCCCEECTGG
T ss_pred             hhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-ccCcc--cCCccCEEECCCCcCCCCChhH
Confidence                                          12233445566666666555 23322  2466777777777777666777


Q ss_pred             ccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCC-------
Q 038699          113 IGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDG-------  185 (237)
Q Consensus       113 ~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-------  185 (237)
                      +..++.++.| ++++|.+.+..+..+.++++|++|++++|.++ .+|..+..+++|++|++++|+|+......       
T Consensus       191 ~~~~~~l~~L-~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~  268 (305)
T d1xkua_         191 LKGLNNLAKL-GLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN  268 (305)
T ss_dssp             GTTCTTCCEE-ECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCC
T ss_pred             hhcccccccc-ccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchh
Confidence            8888888888 88888888777888888889999999999888 56778888899999999999888432221       


Q ss_pred             CccCCCccchhccCCcccccCC
Q 038699          186 SVFSSSQSSAFTNNKDLCGKVQ  207 (237)
Q Consensus       186 ~~~~~l~~~~l~~n~~l~~~~~  207 (237)
                      .....+..+++.+|+.-+..++
T Consensus       269 ~~~~~L~~L~L~~N~~~~~~~~  290 (305)
T d1xkua_         269 TKKASYSGVSLFSNPVQYWEIQ  290 (305)
T ss_dssp             TTSCCCSEEECCSSSSCGGGSC
T ss_pred             cccCCCCEEECCCCcCccCcCC
Confidence            2345677888888887655443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3e-23  Score=163.53  Aligned_cols=207  Identities=26%  Similarity=0.227  Sum_probs=175.6

Q ss_pred             CEEecCCcCCCCCCcccCCCCCCcEEEcc-CCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCC
Q 038699            1 MLGLAGNSIGGKIPAEIGSLSQLVELHLS-SNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMN   79 (237)
Q Consensus         1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~-~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   79 (237)
                      +||+++|++..+.+..+..+..++.+... .+.+....+..|..+++|++|++++|.+....+..+....+|+.+++++|
T Consensus        60 ~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N  139 (284)
T d1ozna_          60 ILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN  139 (284)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             ccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccc
Confidence            48999999999999989999999998765 66777677888999999999999999998667778888999999999999


Q ss_pred             cCcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccC
Q 038699           80 RLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIP  159 (237)
Q Consensus        80 ~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  159 (237)
                      .+++..+..+..+++|++|++++|.+....+..+..+++|+.+ ++++|++.+..+..|.++++|++|++++|.+.+..+
T Consensus       140 ~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l-~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~  218 (284)
T d1ozna_         140 ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL-LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT  218 (284)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE-ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred             cccccChhHhccccchhhcccccCcccccchhhhccccccchh-hhhhccccccChhHhhhhhhcccccccccccccccc
Confidence            9997667788999999999999999998888899999999999 999999998889999999999999999999998888


Q ss_pred             ccccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCCcccccCCC
Q 038699          160 ASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCGKVQG  208 (237)
Q Consensus       160 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~l~~~~~~  208 (237)
                      ..|..+++|++|++++|++.+..+.......++.+....+...|..|..
T Consensus       219 ~~~~~~~~L~~L~l~~N~l~C~C~~~~l~~~l~~~~~~~~~~~C~~p~~  267 (284)
T d1ozna_         219 EALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQR  267 (284)
T ss_dssp             HHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGG
T ss_pred             cccccccccCEEEecCCCCCCCccchHHHHHHHhCcCCCCceEeCCchH
Confidence            8999999999999999999865443222222344444455555654443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.87  E-value=9.5e-23  Score=162.68  Aligned_cols=181  Identities=35%  Similarity=0.545  Sum_probs=142.9

Q ss_pred             CEEecC-CcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCC
Q 038699            1 MLGLAG-NSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMN   79 (237)
Q Consensus         1 ~L~l~~-n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   79 (237)
                      +|||++ |++.+.+|..|.++++|++|++++|++.+..+..+..+.+|+.++++.|.+...+|..+..++.++.+++++|
T Consensus        80 ~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n  159 (313)
T d1ogqa_          80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN  159 (313)
T ss_dssp             EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred             ccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeecccc
Confidence            378886 7888889999999999999999999988777777888888888888888877777778888888888888887


Q ss_pred             cCcCcccccccCCC------------------------------------------------CCCEEEccCCcccccCCc
Q 038699           80 RLSGPIPNQIGELR------------------------------------------------DLRILNLSQNNLIGTIPF  111 (237)
Q Consensus        80 ~i~~~~~~~~~~l~------------------------------------------------~L~~L~l~~n~~~~~~~~  111 (237)
                      .+.+.+|..+..+.                                                +++.+++++|.+.+. +.
T Consensus       160 ~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~-~~  238 (313)
T d1ogqa_         160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD-LG  238 (313)
T ss_dssp             CCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB-GG
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence            77655555444443                                                344444444444433 33


Q ss_pred             cccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCc-CcCC-CCC
Q 038699          112 QIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNN-LEGP-LPD  184 (237)
Q Consensus       112 ~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~-~~~  184 (237)
                      .+..+++++.| ++++|++++..|..+..+++|++|++++|++++.+|. +..+++|+.+++++|+ +.+. +|.
T Consensus       239 ~~~~~~~L~~L-~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~plp~  311 (313)
T d1ogqa_         239 KVGLSKNLNGL-DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLPA  311 (313)
T ss_dssp             GCCCCTTCCEE-ECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEESTTSSC
T ss_pred             ccccccccccc-cCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCCCCCC
Confidence            56778899999 9999999999999999999999999999999987774 5788999999999998 4543 443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.85  E-value=4.4e-20  Score=146.45  Aligned_cols=193  Identities=25%  Similarity=0.294  Sum_probs=151.5

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL   81 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i   81 (237)
                      +|-++.+++.+ |..+.  +.+++|+|++|+|+...+.+|..+++|++|++++|.+....+..|..+++|+.|++++|.+
T Consensus        15 ~~C~~~~L~~l-P~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l   91 (305)
T d1xkua_          15 VQCSDLGLEKV-PKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL   91 (305)
T ss_dssp             EECTTSCCCSC-CCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEecCCCCCcc-CCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCcc
Confidence            45566778744 55553  6899999999999966667899999999999999999977788899999999999999887


Q ss_pred             cCcccc------------------------------------------------cccCCCCCCEEEccCCcccccCCccc
Q 038699           82 SGPIPN------------------------------------------------QIGELRDLRILNLSQNNLIGTIPFQI  113 (237)
Q Consensus        82 ~~~~~~------------------------------------------------~~~~l~~L~~L~l~~n~~~~~~~~~~  113 (237)
                      +. +|.                                                .+..+++|+.+++++|.+.. .+.. 
T Consensus        92 ~~-l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~-  168 (305)
T d1xkua_          92 KE-LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQG-  168 (305)
T ss_dssp             SB-CCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSS-
T ss_pred             Cc-CccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-cCcc-
Confidence            62 221                                                12334556666666665542 2222 


Q ss_pred             cCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCCCccCCCcc
Q 038699          114 GNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQS  193 (237)
Q Consensus       114 ~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~  193 (237)
                       .+++++.| ++++|......+..|.+++.++.|++++|.+++..+..+..+++|++|++++|+++...++...+++++.
T Consensus       169 -~~~~L~~L-~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~  246 (305)
T d1xkua_         169 -LPPSLTEL-HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQV  246 (305)
T ss_dssp             -CCTTCSEE-ECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCE
T ss_pred             -cCCccCEE-ECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccccccccccccCCCE
Confidence             24677777 8888888777788899999999999999999988888999999999999999999965455667899999


Q ss_pred             chhccCCccc
Q 038699          194 SAFTNNKDLC  203 (237)
Q Consensus       194 ~~l~~n~~l~  203 (237)
                      +++.+|. +.
T Consensus       247 L~Ls~N~-i~  255 (305)
T d1xkua_         247 VYLHNNN-IS  255 (305)
T ss_dssp             EECCSSC-CC
T ss_pred             EECCCCc-cC
Confidence            9999984 44

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.81  E-value=4.8e-20  Score=136.80  Aligned_cols=172  Identities=24%  Similarity=0.282  Sum_probs=86.2

Q ss_pred             cEEEccCCcCCCccCccccCCCCCCEEeccCCcccc-cCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccC
Q 038699           24 VELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISG-QIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQ  102 (237)
Q Consensus        24 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~  102 (237)
                      +.++.++++++ .+|..+.  +++++|+|++|.++. ..+..|..+++|+.|++++|.+....+..+..+++|++|++++
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            34555555555 3343322  355555555555543 2234445555555555555555544445555555555555555


Q ss_pred             CcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccC-ccccCCCCCCEEEcCCCcCcCC
Q 038699          103 NNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIP-ASLSSMLSLVAVNLSYNNLEGP  181 (237)
Q Consensus       103 n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~  181 (237)
                      |.+....+..|.++++|+.| ++++|+++...+.+|..+++|+++++++|.+..... .++.  ..++.+.+..+.++..
T Consensus        88 N~l~~l~~~~F~~l~~L~~L-~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~--~~l~~~~l~~~~~~c~  164 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTL-NLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCG  164 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEE-ECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBC
T ss_pred             ccccccCHHHHhCCCccccc-ccCCccccccCHHHhcCCcccccccccccccccccchHHHh--hhhhhhcccCCCeEeC
Confidence            55554445555555555555 555555555555555555666666666655542111 1111  1233344445555543


Q ss_pred             CCCCCccCCCccchhccCCccc
Q 038699          182 LPDGSVFSSSQSSAFTNNKDLC  203 (237)
Q Consensus       182 ~~~~~~~~~l~~~~l~~n~~l~  203 (237)
                      .|.  .+..+...++..|..-|
T Consensus       165 ~p~--~l~~~~l~~L~~n~l~C  184 (192)
T d1w8aa_         165 APS--KVRDVQIKDLPHSEFKC  184 (192)
T ss_dssp             SST--TTTTSBGGGSCTTTCCC
T ss_pred             CCh--hhcCCEeeecCHhhCcC
Confidence            333  23344455555554444

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.81  E-value=7.6e-19  Score=133.55  Aligned_cols=179  Identities=25%  Similarity=0.426  Sum_probs=85.8

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL   81 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i   81 (237)
                      |++.+|+++..  +.+..+++|++|++++|.+++..+  +..+++++.+++++|.++. + ..+..+++|+.++++++..
T Consensus        46 L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~l~l~~~~~  119 (227)
T d1h6ua2          46 LSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQI  119 (227)
T ss_dssp             EECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSCC
T ss_pred             EECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc--ccccccccccccccccccc-c-ccccccccccccccccccc
Confidence            44455555432  234455555555555555543222  4455555555555554442 1 2344555555555555544


Q ss_pred             cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCcc
Q 038699           82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPAS  161 (237)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  161 (237)
                      .+.  ..+...+.+..+.++.+.+...  ..+..+++|+.| ++++|.+.+.  ..+.++++|+.|++++|.+++ ++ .
T Consensus       120 ~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L-~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~-l~-~  190 (227)
T d1h6ua2         120 TDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYL-SIGNAQVSDL--TPLANLSKLTTLKADDNKISD-IS-P  190 (227)
T ss_dssp             CCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEE-ECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CG-G
T ss_pred             ccc--chhccccchhhhhchhhhhchh--hhhccccccccc-cccccccccc--hhhcccccceecccCCCccCC-Ch-h
Confidence            322  1234444555555555444322  224445555555 5555555422  224555566666666665553 22 2


Q ss_pred             ccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchh
Q 038699          162 LSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAF  196 (237)
Q Consensus       162 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l  196 (237)
                      +..+++|++|++++|++++ ++....+++++.+++
T Consensus       191 l~~l~~L~~L~Ls~N~lt~-i~~l~~l~~L~~L~l  224 (227)
T d1h6ua2         191 LASLPNLIEVHLKNNQISD-VSPLANTSNLFIVTL  224 (227)
T ss_dssp             GGGCTTCCEEECTTSCCCB-CGGGTTCTTCCEEEE
T ss_pred             hcCCCCCCEEECcCCcCCC-CcccccCCCCCEEEe
Confidence            4555566666666665552 333344445554444

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.80  E-value=1.2e-19  Score=134.71  Aligned_cols=160  Identities=25%  Similarity=0.317  Sum_probs=132.9

Q ss_pred             CCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcc-cccccCCCCCCEEEccCCcccccCCccccCccCccccccC
Q 038699           47 LSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPI-PNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDL  125 (237)
Q Consensus        47 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l  125 (237)
                      .+.++.++++++ .+|..+.  +++++|++++|.++... +..|..+++|++|++++|.+....+..+..+++|+.| ++
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L-~L   85 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL-QL   85 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE-EC
T ss_pred             CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccccccccee-ee
Confidence            457899999998 6776553  68999999999997544 5678899999999999999998888999999999999 99


Q ss_pred             cCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCCccccc
Q 038699          126 SYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCGK  205 (237)
Q Consensus       126 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~l~~~  205 (237)
                      ++|+++...+.+|.++++|++|+|++|.|+...+++|..+++|++|++++|++....+.......+....+..+...|+.
T Consensus        86 s~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~  165 (192)
T d1w8aa_          86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGA  165 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCS
T ss_pred             ccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCC
Confidence            99999988889999999999999999999988888999999999999999999865443322333455556666666766


Q ss_pred             CCCCC
Q 038699          206 VQGLR  210 (237)
Q Consensus       206 ~~~~~  210 (237)
                      |..++
T Consensus       166 p~~l~  170 (192)
T d1w8aa_         166 PSKVR  170 (192)
T ss_dssp             STTTT
T ss_pred             Chhhc
Confidence            65443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.80  E-value=8.5e-19  Score=130.68  Aligned_cols=174  Identities=22%  Similarity=0.355  Sum_probs=136.5

Q ss_pred             ecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcC
Q 038699            4 LAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSG   83 (237)
Q Consensus         4 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~   83 (237)
                      ++.+.+++..+  ...+.++++|+++++.++. +. .+..+++|++|++++|.+++. + .+..+++|++|++++|.+..
T Consensus        25 l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~-l~-~l~~l~nL~~L~Ls~N~l~~~-~-~l~~l~~L~~L~l~~n~~~~   98 (199)
T d2omxa2          25 LGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIAD   98 (199)
T ss_dssp             TTCSSTTSEEC--HHHHTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC
T ss_pred             hCCCCCCCccC--HHHhcCCCEEECCCCCCCC-cc-ccccCCCcCcCccccccccCc-c-cccCCccccccccccccccc
Confidence            34455554433  2356889999999999984 33 478899999999999999854 3 38899999999999999874


Q ss_pred             cccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCcccc
Q 038699           84 PIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLS  163 (237)
Q Consensus        84 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  163 (237)
                       ++ .+..++.|+.+++++|.....  ..+..+++|+.+ ++++|.+.. . ..+..+++++.|++.+|.+++. + .+.
T Consensus        99 -~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L-~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l-~-~l~  169 (199)
T d2omxa2          99 -IT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRL-ELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDL-K-PLA  169 (199)
T ss_dssp             -CG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEE-ECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCC-G-GGT
T ss_pred             -cc-ccccccccccccccccccccc--cccchhhhhHHh-hhhhhhhcc-c-ccccccccccccccccccccCC-c-ccc
Confidence             33 488999999999999988643  357889999999 999999873 3 3578899999999999999853 2 478


Q ss_pred             CCCCCCEEEcCCCcCcCCCCCCCccCCCcc
Q 038699          164 SMLSLVAVNLSYNNLEGPLPDGSVFSSSQS  193 (237)
Q Consensus       164 ~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~  193 (237)
                      .+++|++|++++|++++ ++....++++++
T Consensus       170 ~l~~L~~L~ls~N~i~~-i~~l~~L~~L~~  198 (199)
T d2omxa2         170 NLTTLERLDISSNKVSD-ISVLAKLTNLES  198 (199)
T ss_dssp             TCTTCCEEECCSSCCCC-CGGGGGCTTCSE
T ss_pred             CCCCCCEEECCCCCCCC-CccccCCCCCCc
Confidence            99999999999999984 555555555543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=1.4e-18  Score=130.63  Aligned_cols=178  Identities=23%  Similarity=0.331  Sum_probs=139.3

Q ss_pred             cCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCc
Q 038699            5 AGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGP   84 (237)
Q Consensus         5 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~   84 (237)
                      ..+.+++.++.  ..+.+|++|++++|.++.. + .+..+++|++|++++|.+++ ++ .+..+++|+.|++++|.+++ 
T Consensus        32 ~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~-  104 (210)
T d1h6ta2          32 KKKSVTDAVTQ--NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKD-  104 (210)
T ss_dssp             TCSCTTSEECH--HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-
T ss_pred             CcCccCCccCH--HHhcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccC-cc-ccccCccccccccccccccc-
Confidence            34444444332  2467899999999999843 3 37889999999999999985 33 46789999999999999984 


Q ss_pred             ccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccC
Q 038699           85 IPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSS  164 (237)
Q Consensus        85 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  164 (237)
                      ++ .+..+++|+.|++++|.+..  ...+..++.++.+ ++++|.+++  ...+..+++|+.+++++|.+++. + .+..
T Consensus       105 l~-~l~~l~~L~~L~l~~~~~~~--~~~l~~l~~l~~l-~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~-~l~~  176 (210)
T d1h6ta2         105 LS-SLKDLKKLKSLSLEHNGISD--INGLVHLPQLESL-YLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-V-PLAG  176 (210)
T ss_dssp             GG-GGTTCTTCCEEECTTSCCCC--CGGGGGCTTCCEE-ECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-G-GGTT
T ss_pred             cc-cccccccccccccccccccc--ccccccccccccc-ccccccccc--ccccccccccccccccccccccc-c-cccC
Confidence            44 58889999999999998763  2467888899999 999998863  34567789999999999999853 3 3788


Q ss_pred             CCCCCEEEcCCCcCcCCCCCCCccCCCccchhcc
Q 038699          165 MLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTN  198 (237)
Q Consensus       165 ~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~  198 (237)
                      +++|++|++++|+++ .++....+++++.+++++
T Consensus       177 l~~L~~L~Ls~N~i~-~l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         177 LTKLQNLYLSKNHIS-DLRALAGLKNLDVLELFS  209 (210)
T ss_dssp             CTTCCEEECCSSCCC-BCGGGTTCTTCSEEEEEE
T ss_pred             CCCCCEEECCCCCCC-CChhhcCCCCCCEEEccC
Confidence            999999999999998 466667778888877653

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=9.3e-19  Score=131.56  Aligned_cols=159  Identities=28%  Similarity=0.376  Sum_probs=108.1

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL   81 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i   81 (237)
                      |++++|.++...  .+..+++|++|++++|.+++..  .+..+++|++|++++|++++ ++ .+..+++|+.|++++|.+
T Consensus        51 L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~  124 (210)
T d1h6ta2          51 IIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGI  124 (210)
T ss_dssp             EECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCC
T ss_pred             EECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-cccccccccccccccccc
Confidence            567777776543  3666777778888877777433  25677777888887777763 33 466777778887777776


Q ss_pred             cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCcc
Q 038699           82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPAS  161 (237)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  161 (237)
                      .. + ..+..++.++.+++++|.+.+  +..+..+++|+.+ ++++|++.+..  .+.++++|+.|++++|.+++ ++ .
T Consensus       125 ~~-~-~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l-~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~~-l~-~  195 (210)
T d1h6ta2         125 SD-I-NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTL-SLEDNQISDIV--PLAGLTKLQNLYLSKNHISD-LR-A  195 (210)
T ss_dssp             CC-C-GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEE-ECCSSCCCCCG--GGTTCTTCCEEECCSSCCCB-CG-G
T ss_pred             cc-c-ccccccccccccccccccccc--ccccccccccccc-ccccccccccc--cccCCCCCCEEECCCCCCCC-Ch-h
Confidence            53 2 346677777777777777653  2345667777777 77777776332  36677777888887777763 33 4


Q ss_pred             ccCCCCCCEEEcCC
Q 038699          162 LSSMLSLVAVNLSY  175 (237)
Q Consensus       162 ~~~~~~L~~L~l~~  175 (237)
                      +..+++|++|++++
T Consensus       196 l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         196 LAGLKNLDVLELFS  209 (210)
T ss_dssp             GTTCTTCSEEEEEE
T ss_pred             hcCCCCCCEEEccC
Confidence            67777777777753

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.8e-18  Score=132.59  Aligned_cols=190  Identities=17%  Similarity=0.125  Sum_probs=100.4

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCcc-CccccCCCCCCEEeccC-CcccccCcccccCCCCCCEEEccCC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEI-PAHIGNLTELSTLSLNG-NNISGQIPEEIGGLLNLDSLDLSMN   79 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n   79 (237)
                      ||+++|.++...+.+|.++++|++|++++|.+...+ +.+|..++.++++.+.. +.+....+..|..+++|+.+++++|
T Consensus        34 L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~  113 (242)
T d1xwdc1          34 LRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT  113 (242)
T ss_dssp             EEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESC
T ss_pred             EECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccchh
Confidence            455555555444445555555555555555554322 33455555555555432 3444444455555556666666555


Q ss_pred             cCcCccc-ccccCCCCCCEEEccCCcccccCCccccCcc-CccccccCcCcccccccChhhcCCCCCC-eEeCcCCcCcC
Q 038699           80 RLSGPIP-NQIGELRDLRILNLSQNNLIGTIPFQIGNLV-GLQDLQDLSYNSLTGEIPAQLGKLTRLQ-SLNLSHNNLSG  156 (237)
Q Consensus        80 ~i~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~~l~~n~~~~~~~~~~~~~~~L~-~L~l~~n~l~~  156 (237)
                      .+....+ ..+..++.+..+...++.+....+..+..++ .+..+ ++.+|+++......+.. .++. .+++.+|.++.
T Consensus       114 ~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L-~l~~n~l~~i~~~~~~~-~~l~~~~~l~~n~l~~  191 (242)
T d1xwdc1         114 GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL-WLNKNGIQEIHNCAFNG-TQLDELNLSDNNNLEE  191 (242)
T ss_dssp             CCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEE-ECCSSCCCEECTTTTTT-CCEEEEECTTCTTCCC
T ss_pred             hhcccccccccccccccccccccccccccccccccccccccceee-ecccccccccccccccc-hhhhcccccccccccc
Confidence            5542211 1122233333344444444433334444443 45566 77777777555554433 4443 34567777775


Q ss_pred             ccCccccCCCCCCEEEcCCCcCcCCCCCCCccCCCccch
Q 038699          157 EIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSA  195 (237)
Q Consensus       157 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~  195 (237)
                      ..+..|.++++|++|++++|+++. +|.. .|.++..+.
T Consensus       192 l~~~~f~~l~~L~~L~Ls~N~l~~-l~~~-~~~~l~~L~  228 (242)
T d1xwdc1         192 LPNDVFHGASGPVILDISRTRIHS-LPSY-GLENLKKLR  228 (242)
T ss_dssp             CCTTTTTTSCCCSEEECTTSCCCC-CCSS-SCTTCCEEE
T ss_pred             ccHHHhcCCCCCCEEECCCCcCCc-cCHH-HHcCCcccc
Confidence            555567788888888888888874 4332 344444443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=3.9e-18  Score=138.72  Aligned_cols=182  Identities=29%  Similarity=0.417  Sum_probs=119.2

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL   81 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i   81 (237)
                      +++++|.+++..+  +..+++|++|++++|.+++ + +.+..+++|+.+++++|.+++. + .+..+++|++|+++++.+
T Consensus       202 l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~-~-~~~~~~~L~~L~l~~~~l  275 (384)
T d2omza2         202 LIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNL-A-PLSGLTKLTELKLGANQI  275 (384)
T ss_dssp             EECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCSEEECCSSCC
T ss_pred             eeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCC-C-cccccccCCEeeccCccc
Confidence            4566666665543  3445667777777776663 2 2456667777777777776633 2 255667777777777776


Q ss_pred             cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCcc
Q 038699           82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPAS  161 (237)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  161 (237)
                      .+. + .+..++.++.+.++.|.+.+.  ..+..+++++.+ ++++|++++..  .+..+++|++|++++|.+++ ++ .
T Consensus       276 ~~~-~-~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L-~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~  346 (384)
T d2omza2         276 SNI-S-PLAGLTALTNLELNENQLEDI--SPISNLKNLTYL-TLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-S  346 (384)
T ss_dssp             CCC-G-GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEE-ECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-G
T ss_pred             CCC-C-ccccccccccccccccccccc--cccchhcccCeE-ECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-h
Confidence            633 2 355667777777777766532  346667777777 78887776443  36677788888888887763 33 5


Q ss_pred             ccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccC
Q 038699          162 LSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNN  199 (237)
Q Consensus       162 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n  199 (237)
                      +..+++|++|++++|++++..| ...+++++.+++.+|
T Consensus       347 l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         347 LANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             GGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECCCE
T ss_pred             HcCCCCCCEEECCCCcCCCChh-hccCCCCCEeeCCCC
Confidence            7777888888888888775443 556677777777665

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=6.2e-18  Score=125.93  Aligned_cols=155  Identities=31%  Similarity=0.454  Sum_probs=130.4

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL   81 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i   81 (237)
                      |++++++++..  +.+..+++|++|++++|++++..+  +.++++|++|++++|.+. .++ .+..++.|+.|+++++..
T Consensus        45 L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~~~~~  118 (199)
T d2omxa2          45 LQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTLFNNQI  118 (199)
T ss_dssp             EECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCC
T ss_pred             EECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCcccccccccccccc-ccc-cccccccccccccccccc
Confidence            78999999864  357889999999999999995433  889999999999999987 333 488999999999999988


Q ss_pred             cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCcc
Q 038699           82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPAS  161 (237)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  161 (237)
                      ...  ..+..+++|+.+++++|.+.. . ..+..+++++.| ++.+|++++.  ..+.++++|+.|++++|++++ + +.
T Consensus       119 ~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L-~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i~~-i-~~  189 (199)
T d2omxa2         119 TDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQL-NFSSNQVTDL--KPLANLTTLERLDISSNKVSD-I-SV  189 (199)
T ss_dssp             CCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEE-ECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-C-GG
T ss_pred             ccc--cccchhhhhHHhhhhhhhhcc-c-cccccccccccc-ccccccccCC--ccccCCCCCCEEECCCCCCCC-C-cc
Confidence            743  357889999999999999863 3 368889999999 9999999854  347899999999999999985 3 35


Q ss_pred             ccCCCCCCEE
Q 038699          162 LSSMLSLVAV  171 (237)
Q Consensus       162 ~~~~~~L~~L  171 (237)
                      +..+++|++|
T Consensus       190 l~~L~~L~~L  199 (199)
T d2omxa2         190 LAKLTNLESL  199 (199)
T ss_dssp             GGGCTTCSEE
T ss_pred             ccCCCCCCcC
Confidence            7889999876

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=2.8e-17  Score=124.75  Aligned_cols=193  Identities=20%  Similarity=0.299  Sum_probs=151.0

Q ss_pred             ecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcC
Q 038699            4 LAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSG   83 (237)
Q Consensus         4 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~   83 (237)
                      ++.+++++..  .++.+.+|+.|++.+|.+++ ++ .+..+++|++|++++|.+++..  .+..+++++.+++++|.++.
T Consensus        26 l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~   99 (227)
T d1h6ua2          26 AGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKN   99 (227)
T ss_dssp             TTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSC
T ss_pred             hCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCceeeccc--cccccccccccccccccccc
Confidence            4455555543  34567899999999999995 43 5889999999999999998543  38899999999999999884


Q ss_pred             cccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCcccc
Q 038699           84 PIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLS  163 (237)
Q Consensus        84 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  163 (237)
                       + ..+..+++|+.+.++++...+.  ..+...+.+..+ .++.+.+...  ..+..+++|+.|++++|.+++.  ..+.
T Consensus       100 -i-~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l-~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~l~  170 (227)
T d1h6ua2         100 -V-SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVL-YLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TPLA  170 (227)
T ss_dssp             -C-GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEE-ECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGT
T ss_pred             -c-cccccccccccccccccccccc--chhccccchhhh-hchhhhhchh--hhhccccccccccccccccccc--hhhc
Confidence             3 3578999999999999987643  346677888888 8888887633  3467889999999999998743  3378


Q ss_pred             CCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCCcccccCCCCCCCCC
Q 038699          164 SMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCGKVQGLRPCNA  214 (237)
Q Consensus       164 ~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~l~~~~~~~~~C~~  214 (237)
                      .+++|++|++++|++++ ++....+++++.+++.+| .+.+.+ .++.|..
T Consensus       171 ~l~~L~~L~Ls~n~l~~-l~~l~~l~~L~~L~Ls~N-~lt~i~-~l~~l~~  218 (227)
T d1h6ua2         171 NLSKLTTLKADDNKISD-ISPLASLPNLIEVHLKNN-QISDVS-PLANTSN  218 (227)
T ss_dssp             TCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECTTS-CCCBCG-GGTTCTT
T ss_pred             ccccceecccCCCccCC-ChhhcCCCCCCEEECcCC-cCCCCc-ccccCCC
Confidence            89999999999999984 666777899999999998 455433 3444544

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=9.7e-17  Score=130.37  Aligned_cols=160  Identities=31%  Similarity=0.495  Sum_probs=136.5

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL   81 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i   81 (237)
                      |++++|+++..  +.+..+++|+.+++.+|.+++..+  +..+++|+.|+++++.+++. + .+..++.++.+++..|.+
T Consensus       224 L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~-~-~~~~~~~l~~l~~~~n~l  297 (384)
T d2omza2         224 LSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI-S-PLAGLTALTNLELNENQL  297 (384)
T ss_dssp             EECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC-G-GGTTCTTCSEEECCSSCC
T ss_pred             EECCCCCCCCc--chhhcccccchhccccCccCCCCc--ccccccCCEeeccCcccCCC-C-cccccccccccccccccc
Confidence            78999998864  357889999999999999985443  78899999999999999843 3 477899999999999998


Q ss_pred             cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCcc
Q 038699           82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPAS  161 (237)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  161 (237)
                      .+.  ..+..+++++++++++|.+.+..  .+..+++|+.| ++++|++++ .+ .+..+++|+.|++++|++++..|  
T Consensus       298 ~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L-~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--  368 (384)
T d2omza2         298 EDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRL-FFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--  368 (384)
T ss_dssp             SCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEE-ECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--
T ss_pred             ccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCEE-ECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--
Confidence            853  35788999999999999998543  48889999999 999999984 33 58899999999999999996544  


Q ss_pred             ccCCCCCCEEEcCCC
Q 038699          162 LSSMLSLVAVNLSYN  176 (237)
Q Consensus       162 ~~~~~~L~~L~l~~n  176 (237)
                      +..+++|+.|++++|
T Consensus       369 l~~l~~L~~L~L~~N  383 (384)
T d2omza2         369 LANLTRITQLGLNDQ  383 (384)
T ss_dssp             GTTCTTCSEEECCCE
T ss_pred             hccCCCCCEeeCCCC
Confidence            789999999999998

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.1e-16  Score=115.06  Aligned_cols=110  Identities=21%  Similarity=0.165  Sum_probs=59.2

Q ss_pred             cCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCC
Q 038699           17 IGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLR   96 (237)
Q Consensus        17 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~   96 (237)
                      |.++.++++|+|++|+|+. ++..+..+++|+.|++++|.++..  +.+..+++|++|++++|.+....+..+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccc
Confidence            4455566666666666663 344445566666666666666632  2355666666666666666533333344566666


Q ss_pred             EEEccCCcccccC-CccccCccCccccccCcCccc
Q 038699           97 ILNLSQNNLIGTI-PFQIGNLVGLQDLQDLSYNSL  130 (237)
Q Consensus        97 ~L~l~~n~~~~~~-~~~~~~l~~L~~L~~l~~n~~  130 (237)
                      +|++++|.+.... ...+..+++|+.+ ++++|.+
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L-~l~~N~i  124 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYL-CILRNPV  124 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEE-ECCSSGG
T ss_pred             cceeccccccccccccccccccccchh-hcCCCcc
Confidence            6666666554221 1233344444444 4444444

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.1e-15  Score=116.69  Aligned_cols=198  Identities=15%  Similarity=0.111  Sum_probs=145.6

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCccccc-CcccccCCCCCCEEEccC-C
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ-IPEEIGGLLNLDSLDLSM-N   79 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~-n   79 (237)
                      ++.++.+++ .+|..+.  +++++|++++|.++...+.+|.++++|++|++++|.+... .+..|..++.++++.+.. |
T Consensus        13 i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n   89 (242)
T d1xwdc1          13 FLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   89 (242)
T ss_dssp             EEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCT
T ss_pred             EEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccc
Confidence            566777887 4454442  5799999999999966667899999999999999988754 345788899999998764 6


Q ss_pred             cCcCcccccccCCCCCCEEEccCCcccccCCc-cccCccCccccccCcCcccccccChhhcCCC-CCCeEeCcCCcCcCc
Q 038699           80 RLSGPIPNQIGELRDLRILNLSQNNLIGTIPF-QIGNLVGLQDLQDLSYNSLTGEIPAQLGKLT-RLQSLNLSHNNLSGE  157 (237)
Q Consensus        80 ~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~  157 (237)
                      .+....+..+..+++|+++++++|.+....+. .+..+..+..+ ...++.+....+..|..++ .++.+++.+|.++..
T Consensus        90 ~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~-~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i  168 (242)
T d1xwdc1          90 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLD-IQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI  168 (242)
T ss_dssp             TCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEE-EESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred             cccccccccccccccccccccchhhhcccccccccccccccccc-cccccccccccccccccccccceeeeccccccccc
Confidence            67656677889999999999999988743322 33445555555 5566677766667777664 788999999999854


Q ss_pred             cCccccCCCCCCEE-EcCCCcCcCCCCC-CCccCCCccchhccCCccccc
Q 038699          158 IPASLSSMLSLVAV-NLSYNNLEGPLPD-GSVFSSSQSSAFTNNKDLCGK  205 (237)
Q Consensus       158 ~~~~~~~~~~L~~L-~l~~n~l~~~~~~-~~~~~~l~~~~l~~n~~l~~~  205 (237)
                      .+..+ ..+++.++ ++++|+++...+. ...+++++.+++.+|. +...
T Consensus       169 ~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~-l~~l  216 (242)
T d1xwdc1         169 HNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSL  216 (242)
T ss_dssp             CTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC-CCCC
T ss_pred             ccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCc-CCcc
Confidence            44444 45565555 5788889854443 3557899999998885 4433

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.6e-16  Score=114.19  Aligned_cols=128  Identities=22%  Similarity=0.203  Sum_probs=106.7

Q ss_pred             cccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCccccCccCc
Q 038699           40 HIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGL  119 (237)
Q Consensus        40 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  119 (237)
                      .|.++.++++|++++|+++ .++..+..+++|+.|++++|.+. .+ ..+..+++|++|++++|.++...+..+..+++|
T Consensus        13 ~~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             hccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-cc-CCcccCcchhhhhcccccccCCCcccccccccc
Confidence            3667789999999999998 56777778999999999999998 44 358889999999999999986666667789999


Q ss_pred             cccccCcCcccccccC-hhhcCCCCCCeEeCcCCcCcCccCc----cccCCCCCCEEE
Q 038699          120 QDLQDLSYNSLTGEIP-AQLGKLTRLQSLNLSHNNLSGEIPA----SLSSMLSLVAVN  172 (237)
Q Consensus       120 ~~L~~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~~~~L~~L~  172 (237)
                      +.| ++++|.+..... ..+..+++|+.+++++|.++. .+.    .+..+++|+.||
T Consensus        90 ~~L-~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          90 TEL-ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CEE-ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEET
T ss_pred             ccc-eeccccccccccccccccccccchhhcCCCcccc-ccchHHHHHHHCCCcCeeC
Confidence            999 999999975432 467889999999999999973 443    577889999987

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=4.4e-16  Score=106.82  Aligned_cols=101  Identities=27%  Similarity=0.346  Sum_probs=75.7

Q ss_pred             CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699            1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR   80 (237)
Q Consensus         1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   80 (237)
                      +|||++|+++.. + .+..+++|++|++++|+++ .+|..|..+++|+.|++++|.++ .++ .+..+++|++|++++|.
T Consensus         2 ~L~Ls~n~l~~l-~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLTVL-C-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCSSC-C-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCCCC-c-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCCc
Confidence            478888888744 3 3777888888888888887 56667788888888888888887 343 47788888888888888


Q ss_pred             CcCccc-ccccCCCCCCEEEccCCccc
Q 038699           81 LSGPIP-NQIGELRDLRILNLSQNNLI  106 (237)
Q Consensus        81 i~~~~~-~~~~~l~~L~~L~l~~n~~~  106 (237)
                      +..... ..+..+++|+++++++|.++
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            874322 45677788888888888776

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=2.1e-15  Score=103.36  Aligned_cols=101  Identities=28%  Similarity=0.335  Sum_probs=57.5

Q ss_pred             cEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCC
Q 038699           24 VELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQN  103 (237)
Q Consensus        24 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n  103 (237)
                      |.|++++|.++ .++ .+..+++|++|++++|.++ .+|+.+..+++|+.|++++|.+++ ++ .+..+++|+++++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            45666777666 333 2566666666777666666 455556666666666666666663 23 3566666666666666


Q ss_pred             cccccC-CccccCccCccccccCcCccc
Q 038699          104 NLIGTI-PFQIGNLVGLQDLQDLSYNSL  130 (237)
Q Consensus       104 ~~~~~~-~~~~~~l~~L~~L~~l~~n~~  130 (237)
                      .+.... ...+..+++|+.+ ++++|.+
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L-~l~~N~i  102 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLL-NLQGNSL  102 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEE-ECTTSGG
T ss_pred             ccCCCCCchhhcCCCCCCEE-ECCCCcC
Confidence            665321 1233444444444 4444444

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.1e-15  Score=119.67  Aligned_cols=180  Identities=18%  Similarity=0.172  Sum_probs=94.5

Q ss_pred             CCCCCcEEEccCCcCCCc-cCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCC-cCcCc-ccccccCCCCC
Q 038699           19 SLSQLVELHLSSNQLSGE-IPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMN-RLSGP-IPNQIGELRDL   95 (237)
Q Consensus        19 ~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~i~~~-~~~~~~~l~~L   95 (237)
                      ...+|++|+++++.+... +...+..+++|++|++++|.+++..+..+..+++|++|+++++ .+++. +......+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            345677777777666532 2334566677777777777666555566666677777777764 34321 11223456677


Q ss_pred             CEEEccCCc-cccc-CCccccC-ccCccccccCcCcc--cccc-cChhhcCCCCCCeEeCcCC-cCcCccCccccCCCCC
Q 038699           96 RILNLSQNN-LIGT-IPFQIGN-LVGLQDLQDLSYNS--LTGE-IPAQLGKLTRLQSLNLSHN-NLSGEIPASLSSMLSL  168 (237)
Q Consensus        96 ~~L~l~~n~-~~~~-~~~~~~~-l~~L~~L~~l~~n~--~~~~-~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~L  168 (237)
                      ++|++++|. +++. ....+.. .++|+.| +++++.  +++. ....+.++++|++|++++| .+++.....+..+++|
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L-~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L  202 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQL-NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL  202 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEE-ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             cccccccccccccccchhhhcccccccchh-hhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcC
Confidence            777776653 2211 1111212 2456666 665432  2221 1122344566666666664 3555555556666666


Q ss_pred             CEEEcCCC-cCcCCC-CCCCccCCCccchhccC
Q 038699          169 VAVNLSYN-NLEGPL-PDGSVFSSSQSSAFTNN  199 (237)
Q Consensus       169 ~~L~l~~n-~l~~~~-~~~~~~~~l~~~~l~~n  199 (237)
                      ++|++++| .++... ......++++.+++.++
T Consensus       203 ~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         203 QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            66666664 343211 12233455555555543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.50  E-value=1.2e-12  Score=104.40  Aligned_cols=89  Identities=26%  Similarity=0.406  Sum_probs=51.7

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL   81 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i   81 (237)
                      |||++++++. +|+.   .++|++|++++|+++ .+|..   +.+|+.|++++|.++ .+++.   .+.|++|++++|.+
T Consensus        43 LdLs~~~L~~-lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~~n~l  110 (353)
T d1jl5a_          43 LELNNLGLSS-LPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGVSNNQL  110 (353)
T ss_dssp             EECTTSCCSC-CCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEEECCSSCC
T ss_pred             EEeCCCCCCC-CCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhhh---cccccccccccccc
Confidence            7888888874 4543   467888888888888 45543   345666666666655 22221   12455666666555


Q ss_pred             cCcccccccCCCCCCEEEccCCc
Q 038699           82 SGPIPNQIGELRDLRILNLSQNN  104 (237)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~l~~n~  104 (237)
                      . .+|. +..+++|++++++++.
T Consensus       111 ~-~lp~-~~~l~~L~~L~l~~~~  131 (353)
T d1jl5a_         111 E-KLPE-LQNSSFLKIIDVDNNS  131 (353)
T ss_dssp             S-SCCC-CTTCTTCCEEECCSSC
T ss_pred             c-cccc-hhhhccceeecccccc
Confidence            5 3332 3445555555555443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.8e-13  Score=97.34  Aligned_cols=102  Identities=22%  Similarity=0.172  Sum_probs=55.5

Q ss_pred             EEecCCcCCCCCCcccCCCCCCcEEEccCC-cCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699            2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSN-QLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR   80 (237)
Q Consensus         2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   80 (237)
                      ++.+++++. ..|..+..+++|++|++.++ .++...+.+|.++++|+.|++++|+++...+..|..+++|++|++++|.
T Consensus        13 l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~   91 (156)
T d2ifga3          13 LRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (156)
T ss_dssp             EECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             EEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCC
Confidence            344455554 23444555566666666544 3554444556666666666666666665555556666666666666666


Q ss_pred             CcCcccccccCCCCCCEEEccCCcc
Q 038699           81 LSGPIPNQIGELRDLRILNLSQNNL  105 (237)
Q Consensus        81 i~~~~~~~~~~l~~L~~L~l~~n~~  105 (237)
                      ++...+..+. ..+|++|++++|.+
T Consensus        92 l~~l~~~~~~-~~~l~~L~L~~Np~  115 (156)
T d2ifga3          92 LESLSWKTVQ-GLSLQELVLSGNPL  115 (156)
T ss_dssp             CSCCCSTTTC-SCCCCEEECCSSCC
T ss_pred             CcccChhhhc-cccccccccCCCcc
Confidence            6532223332 23466666666655

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.47  E-value=3.8e-16  Score=115.92  Aligned_cols=113  Identities=31%  Similarity=0.347  Sum_probs=62.1

Q ss_pred             cCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCccccCc
Q 038699           37 IPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNL  116 (237)
Q Consensus        37 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l  116 (237)
                      ++..+..+++|++|++++|.++ .++ .+..+++|+.|++++|.+. .++..+..+++|++|++++|.++..  ..+..+
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l  114 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKL  114 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHHH
T ss_pred             hhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-ccccccccccccccccccccccccc--cccccc
Confidence            4445556666666666666665 232 3556666666666666665 3333333344566666666665532  234555


Q ss_pred             cCccccccCcCcccccccC-hhhcCCCCCCeEeCcCCcCc
Q 038699          117 VGLQDLQDLSYNSLTGEIP-AQLGKLTRLQSLNLSHNNLS  155 (237)
Q Consensus       117 ~~L~~L~~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~  155 (237)
                      ++|+.| ++++|.++.... ..+..+++|+.|++++|+++
T Consensus       115 ~~L~~L-~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         115 VNLRVL-YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HHSSEE-EESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             cccccc-ccccchhccccccccccCCCccceeecCCCccc
Confidence            566666 666666553221 34555666666666666554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=6.9e-13  Score=94.24  Aligned_cols=107  Identities=22%  Similarity=0.187  Sum_probs=68.7

Q ss_pred             CCCcEEEccCCcCCCccCccccCCCCCCEEeccCC-cccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEE
Q 038699           21 SQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGN-NISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILN   99 (237)
Q Consensus        21 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~   99 (237)
                      ...+.++.+++.+. ..|..+..+++|++|+++++ .++...++.|..+++|+.|++++|.+....+.+|..+++|++|+
T Consensus         8 ~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           8 HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            34455677776666 45556667777777777654 46655556677777777777777777755566677777777777


Q ss_pred             ccCCcccccCCccccCccCccccccCcCccc
Q 038699          100 LSQNNLIGTIPFQIGNLVGLQDLQDLSYNSL  130 (237)
Q Consensus       100 l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~  130 (237)
                      +++|.+....+..+ ...+|+.| ++++|.+
T Consensus        87 Ls~N~l~~l~~~~~-~~~~l~~L-~L~~Np~  115 (156)
T d2ifga3          87 LSFNALESLSWKTV-QGLSLQEL-VLSGNPL  115 (156)
T ss_dssp             CCSSCCSCCCSTTT-CSCCCCEE-ECCSSCC
T ss_pred             ccCCCCcccChhhh-cccccccc-ccCCCcc
Confidence            77777763333333 33356666 6666655

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.43  E-value=6.5e-16  Score=114.62  Aligned_cols=117  Identities=27%  Similarity=0.337  Sum_probs=96.2

Q ss_pred             CCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCC
Q 038699           13 IPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGEL   92 (237)
Q Consensus        13 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l   92 (237)
                      ++..+..+++|++|++++|.|+. ++ .+..+++|+.|++++|.++ .++..+..+++|+.|++++|.++. + ..+..+
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~l  114 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEKL  114 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHHH
T ss_pred             hhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-cccccccccccccccccccccccc-c-cccccc
Confidence            34567889999999999999994 44 5889999999999999998 566656666789999999999984 3 357889


Q ss_pred             CCCCEEEccCCcccccCC-ccccCccCccccccCcCcccccccC
Q 038699           93 RDLRILNLSQNNLIGTIP-FQIGNLVGLQDLQDLSYNSLTGEIP  135 (237)
Q Consensus        93 ~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~~l~~n~~~~~~~  135 (237)
                      ++|++|++++|.++.... ..+..+++|+.| ++++|.+....+
T Consensus       115 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L-~L~~N~l~~~~~  157 (198)
T d1m9la_         115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDL-LLAGNPLYNDYK  157 (198)
T ss_dssp             HHSSEEEESEEECCCHHHHHHHTTTTTCSEE-EECSSHHHHHHC
T ss_pred             ccccccccccchhccccccccccCCCcccee-ecCCCccccCcc
Confidence            999999999999974322 468899999999 999998864433

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=6.1e-14  Score=109.61  Aligned_cols=175  Identities=22%  Similarity=0.232  Sum_probs=132.7

Q ss_pred             CEEecCCcCCCCC-CcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCC-ccccc-CcccccCCCCCCEEEcc
Q 038699            1 MLGLAGNSIGGKI-PAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGN-NISGQ-IPEEIGGLLNLDSLDLS   77 (237)
Q Consensus         1 ~L~l~~n~~~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~   77 (237)
                      +||++++.++... ...+..+++|++|+++++.+.+.....+..+++|++|++++| .+++. +......+++|++|+++
T Consensus        50 ~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls  129 (284)
T d2astb2          50 HMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS  129 (284)
T ss_dssp             EEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECC
T ss_pred             EEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccc
Confidence            3788888887543 344788999999999999998777778889999999999996 45532 12234568999999999


Q ss_pred             CCc-CcCc-cccccc-CCCCCCEEEccCCc--cccc-CCccccCccCccccccCcCcc-cccccChhhcCCCCCCeEeCc
Q 038699           78 MNR-LSGP-IPNQIG-ELRDLRILNLSQNN--LIGT-IPFQIGNLVGLQDLQDLSYNS-LTGEIPAQLGKLTRLQSLNLS  150 (237)
Q Consensus        78 ~n~-i~~~-~~~~~~-~l~~L~~L~l~~n~--~~~~-~~~~~~~l~~L~~L~~l~~n~-~~~~~~~~~~~~~~L~~L~l~  150 (237)
                      ++. +++. +...+. ..+.|+.|+++++.  +++. +......+++|++| ++++|. +++.....+.++++|++|+++
T Consensus       130 ~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L-~L~~~~~itd~~~~~l~~~~~L~~L~L~  208 (284)
T d2astb2         130 WCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL-DLSDSVMLKNDCFQEFFQLNYLQHLSLS  208 (284)
T ss_dssp             CCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEE-ECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred             cccccccccchhhhcccccccchhhhccccccccccccccccccccccccc-ccccccCCCchhhhhhcccCcCCEEECC
Confidence            974 4321 122233 35789999999753  3322 22344668899999 999864 776777788899999999999


Q ss_pred             CC-cCcCccCccccCCCCCCEEEcCCC
Q 038699          151 HN-NLSGEIPASLSSMLSLVAVNLSYN  176 (237)
Q Consensus       151 ~n-~l~~~~~~~~~~~~~L~~L~l~~n  176 (237)
                      +| .+++.....++.+++|++|+++++
T Consensus       209 ~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         209 RCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            95 687777777889999999999987

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.35  E-value=8.3e-14  Score=111.65  Aligned_cols=185  Identities=21%  Similarity=0.215  Sum_probs=124.0

Q ss_pred             cccCCCCCCcEEEccCCcCCCc----cCccccCCCCCCEEeccCCcccccCcc-------------cccCCCCCCEEEcc
Q 038699           15 AEIGSLSQLVELHLSSNQLSGE----IPAHIGNLTELSTLSLNGNNISGQIPE-------------EIGGLLNLDSLDLS   77 (237)
Q Consensus        15 ~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~-------------~~~~l~~L~~L~l~   77 (237)
                      ..+..+++|++|++++|.+...    +...+...++|++|++++|.+......             .....+.|+.++++
T Consensus        87 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~  166 (344)
T d2ca6a1          87 QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG  166 (344)
T ss_dssp             HHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC
T ss_pred             HHHhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecc
Confidence            3356678999999999988754    334445678999999999877532111             11345788888888


Q ss_pred             CCcCcCc----ccccccCCCCCCEEEccCCccccc-----CCccccCccCccccccCcCcccccc----cChhhcCCCCC
Q 038699           78 MNRLSGP----IPNQIGELRDLRILNLSQNNLIGT-----IPFQIGNLVGLQDLQDLSYNSLTGE----IPAQLGKLTRL  144 (237)
Q Consensus        78 ~n~i~~~----~~~~~~~l~~L~~L~l~~n~~~~~-----~~~~~~~l~~L~~L~~l~~n~~~~~----~~~~~~~~~~L  144 (237)
                      +|.+...    +...+...+.|+.|++++|.+...     +...+...++|+.| ++++|.+...    ....+..+++|
T Consensus       167 ~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L-~Ls~N~i~~~g~~~L~~~l~~~~~L  245 (344)
T d2ca6a1         167 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVL-DLQDNTFTHLGSSALAIALKSWPNL  245 (344)
T ss_dssp             SSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEE-ECCSSCCHHHHHHHHHHHGGGCTTC
T ss_pred             cccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccc-ccccccccccccccccccccccccc
Confidence            8887632    233455678889999988887632     23456677888888 8888887543    23445678889


Q ss_pred             CeEeCcCCcCcCccC----ccccC--CCCCCEEEcCCCcCcCC----CCCC--CccCCCccchhccCC
Q 038699          145 QSLNLSHNNLSGEIP----ASLSS--MLSLVAVNLSYNNLEGP----LPDG--SVFSSSQSSAFTNNK  200 (237)
Q Consensus       145 ~~L~l~~n~l~~~~~----~~~~~--~~~L~~L~l~~n~l~~~----~~~~--~~~~~l~~~~l~~n~  200 (237)
                      ++|++++|.+++...    ..+..  .+.|++|++++|+++..    +...  ...+.++.+++.+|.
T Consensus       246 ~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         246 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             hhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence            999999988875422    22322  36788899999887631    1111  134567778887774

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.28  E-value=8.3e-13  Score=105.70  Aligned_cols=198  Identities=19%  Similarity=0.158  Sum_probs=138.6

Q ss_pred             EEecCCcCCCC----CCcccCCCCCCcEEEccCCcCCCc----------cCccccCCCCCCEEeccCCccccc----Ccc
Q 038699            2 LGLAGNSIGGK----IPAEIGSLSQLVELHLSSNQLSGE----------IPAHIGNLTELSTLSLNGNNISGQ----IPE   63 (237)
Q Consensus         2 L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~i~~~----------~~~~~~~l~~L~~L~l~~n~l~~~----~~~   63 (237)
                      |+|++|.+...    +...+...++|+.++++++.....          +...+..+++|++|++++|.++..    +..
T Consensus        36 L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~  115 (344)
T d2ca6a1          36 IVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLID  115 (344)
T ss_dssp             EECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHH
T ss_pred             EECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhh
Confidence            78889888643    344567789999999988765421          223455678999999999988753    333


Q ss_pred             cccCCCCCCEEEccCCcCcCccc----c---------cccCCCCCCEEEccCCccccc----CCccccCccCccccccCc
Q 038699           64 EIGGLLNLDSLDLSMNRLSGPIP----N---------QIGELRDLRILNLSQNNLIGT----IPFQIGNLVGLQDLQDLS  126 (237)
Q Consensus        64 ~~~~l~~L~~L~l~~n~i~~~~~----~---------~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~~l~  126 (237)
                      .+...++|+.|++++|.+.....    .         .....+.|+.+.+++|.+...    +...+...+.++.+ +++
T Consensus       116 ~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L-~L~  194 (344)
T d2ca6a1         116 FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV-KMV  194 (344)
T ss_dssp             HHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEE-ECC
T ss_pred             hhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhccc-ccc
Confidence            45567899999999998752111    1         113567899999999887633    23345667889999 999


Q ss_pred             Ccccccc-----cChhhcCCCCCCeEeCcCCcCcCc----cCccccCCCCCCEEEcCCCcCcCCCCC-------CCccCC
Q 038699          127 YNSLTGE-----IPAQLGKLTRLQSLNLSHNNLSGE----IPASLSSMLSLVAVNLSYNNLEGPLPD-------GSVFSS  190 (237)
Q Consensus       127 ~n~~~~~-----~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~-------~~~~~~  190 (237)
                      .|.+...     ....+...++|+.|++++|.+++.    +...+..+++|++|++++|.+++.-..       ......
T Consensus       195 ~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~  274 (344)
T d2ca6a1         195 QNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG  274 (344)
T ss_dssp             SSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCC
T ss_pred             cccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCC
Confidence            9988642     223456788999999999988643    345667889999999999998632100       012356


Q ss_pred             CccchhccCC
Q 038699          191 SQSSAFTNNK  200 (237)
Q Consensus       191 l~~~~l~~n~  200 (237)
                      +..+++.+|.
T Consensus       275 L~~L~ls~N~  284 (344)
T d2ca6a1         275 LQTLRLQYNE  284 (344)
T ss_dssp             CCEEECCSSC
T ss_pred             CCEEECCCCc
Confidence            7888888874

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.14  E-value=1.5e-09  Score=85.88  Aligned_cols=96  Identities=30%  Similarity=0.356  Sum_probs=76.9

Q ss_pred             CCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEc
Q 038699           21 SQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNL  100 (237)
Q Consensus        21 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l  100 (237)
                      .++++|+|+++.++ .+|+.   .++|++|++++|.++ .+|..   +.+|+.|++.+|.++ .++..   .+.|++|++
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L  105 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGV  105 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEEEC
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhhh---ccccccccc
Confidence            46899999999998 56653   578999999999999 66764   468999999999988 44421   246999999


Q ss_pred             cCCcccccCCccccCccCccccccCcCcccc
Q 038699          101 SQNNLIGTIPFQIGNLVGLQDLQDLSYNSLT  131 (237)
Q Consensus       101 ~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~  131 (237)
                      ++|.+. ..|. +..+++|+.+ +++++.+.
T Consensus       106 ~~n~l~-~lp~-~~~l~~L~~L-~l~~~~~~  133 (353)
T d1jl5a_         106 SNNQLE-KLPE-LQNSSFLKII-DVDNNSLK  133 (353)
T ss_dssp             CSSCCS-SCCC-CTTCTTCCEE-ECCSSCCS
T ss_pred             cccccc-cccc-hhhhccceee-cccccccc
Confidence            999987 4553 5788999999 99888765

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.3e-10  Score=95.28  Aligned_cols=161  Identities=24%  Similarity=0.188  Sum_probs=102.7

Q ss_pred             CCCCCCcEEEccCCcCCCc-----cCccccCCCCCCEEeccCCccccc----CcccccCCCCCCEEEccCCcCcCccccc
Q 038699           18 GSLSQLVELHLSSNQLSGE-----IPAHIGNLTELSTLSLNGNNISGQ----IPEEIGGLLNLDSLDLSMNRLSGPIPNQ   88 (237)
Q Consensus        18 ~~l~~L~~L~L~~n~i~~~-----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~i~~~~~~~   88 (237)
                      ...+.++.+.+.+|.+...     ....+.....++.+++++|.+...    ....+...+.++.+++++|.+.+.....
T Consensus       223 ~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~  302 (460)
T d1z7xw1         223 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL  302 (460)
T ss_dssp             HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH
T ss_pred             cccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccch
Confidence            4567788888888876421     233344567788888888876532    2233455678888888888776322211


Q ss_pred             ----c-cCCCCCCEEEccCCcccccCCc----cccCccCccccccCcCcccccccCh----hh-cCCCCCCeEeCcCCcC
Q 038699           89 ----I-GELRDLRILNLSQNNLIGTIPF----QIGNLVGLQDLQDLSYNSLTGEIPA----QL-GKLTRLQSLNLSHNNL  154 (237)
Q Consensus        89 ----~-~~l~~L~~L~l~~n~~~~~~~~----~~~~l~~L~~L~~l~~n~~~~~~~~----~~-~~~~~L~~L~l~~n~l  154 (237)
                          + .....|+.+++++|.++.....    .+...++|++| ++++|.+.+....    .+ ...+.|++|++++|.|
T Consensus       303 l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L-~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i  381 (460)
T d1z7xw1         303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL-QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV  381 (460)
T ss_dssp             HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEE-ECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             hhccccccccccccccccccchhhhhhhhcccccccccchhhh-heeeecccCcccchhhhhhhcccCCCCEEECCCCCC
Confidence                1 2345788888888877644222    33445678888 8888887643222    22 2356688888888888


Q ss_pred             cCc----cCccccCCCCCCEEEcCCCcCc
Q 038699          155 SGE----IPASLSSMLSLVAVNLSYNNLE  179 (237)
Q Consensus       155 ~~~----~~~~~~~~~~L~~L~l~~n~l~  179 (237)
                      ++.    ++..+..+++|++|++++|+++
T Consensus       382 ~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~  410 (460)
T d1z7xw1         382 SDSSCSSLAATLLANHSLRELDLSNNCLG  410 (460)
T ss_dssp             CHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             ChHHHHHHHHHHhcCCCCCEEECCCCcCC
Confidence            753    3344556788888888888876

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=9.4e-10  Score=90.06  Aligned_cols=162  Identities=20%  Similarity=0.120  Sum_probs=103.4

Q ss_pred             cCCCCCCcEEEccCCcCCCc----cCccccCCCCCCEEeccCCcccccCcccc-----cCCCCCCEEEccCCcCcCccc-
Q 038699           17 IGSLSQLVELHLSSNQLSGE----IPAHIGNLTELSTLSLNGNNISGQIPEEI-----GGLLNLDSLDLSMNRLSGPIP-   86 (237)
Q Consensus        17 ~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~i~~~~~-   86 (237)
                      +.....++.+++++|.+...    ....+...+.++.+++++|.+++.....+     .....|+.++++++.+..... 
T Consensus       251 ~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~  330 (460)
T d1z7xw1         251 LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCS  330 (460)
T ss_dssp             TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhh
Confidence            44567788888888877633    22334556788888888887763222211     234578888888887764322 


Q ss_pred             ---ccccCCCCCCEEEccCCccccc----CCcccc-CccCccccccCcCccccccc----ChhhcCCCCCCeEeCcCCcC
Q 038699           87 ---NQIGELRDLRILNLSQNNLIGT----IPFQIG-NLVGLQDLQDLSYNSLTGEI----PAQLGKLTRLQSLNLSHNNL  154 (237)
Q Consensus        87 ---~~~~~l~~L~~L~l~~n~~~~~----~~~~~~-~l~~L~~L~~l~~n~~~~~~----~~~~~~~~~L~~L~l~~n~l  154 (237)
                         ..+...++|++|++++|.+.+.    ++..+. ..+.|+.| ++++|.+++..    ...+..+++|++|++++|.+
T Consensus       331 ~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L-~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i  409 (460)
T d1z7xw1         331 HFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL-WLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL  409 (460)
T ss_dssp             HHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE-ECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred             hcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEE-ECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcC
Confidence               2334566788888888887542    222232 35568888 88888886432    23455678888888888888


Q ss_pred             cCccCcc----cc-CCCCCCEEEcCCCcCc
Q 038699          155 SGEIPAS----LS-SMLSLVAVNLSYNNLE  179 (237)
Q Consensus       155 ~~~~~~~----~~-~~~~L~~L~l~~n~l~  179 (237)
                      ++.....    +. ....|+.|++.+|.+.
T Consensus       410 ~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         410 GDAGILQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             CHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             CHHHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence            7532222    22 2346888888888776

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=8e-10  Score=78.53  Aligned_cols=82  Identities=28%  Similarity=0.232  Sum_probs=40.6

Q ss_pred             cCCCCCCEEEccCCcccccC--CccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccC-------c
Q 038699           90 GELRDLRILNLSQNNLIGTI--PFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIP-------A  160 (237)
Q Consensus        90 ~~l~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-------~  160 (237)
                      ..++.|++|++++|.++...  +..+..+++|+.| ++++|.++......+.....|+.+++++|.+.....       .
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L-~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKIL-NLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCC-CCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCccccc-ccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            34555555555555554321  2234445555555 666666554333233333456666666666553222       1


Q ss_pred             cccCCCCCCEEE
Q 038699          161 SLSSMLSLVAVN  172 (237)
Q Consensus       161 ~~~~~~~L~~L~  172 (237)
                      .+..+|+|+.||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence            234456666554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=1.6e-09  Score=76.96  Aligned_cols=121  Identities=23%  Similarity=0.195  Sum_probs=74.5

Q ss_pred             CCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCc--ccccccCCCCCCEEE
Q 038699           22 QLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGP--IPNQIGELRDLRILN   99 (237)
Q Consensus        22 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~--~~~~~~~l~~L~~L~   99 (237)
                      ..+.|++++....    ..+..+..+..+...++... .++..+..++.|++|++++|.++..  ++..+..+++|+.|+
T Consensus        23 ~~~~Ldls~l~~~----~~l~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~   97 (162)
T d1koha1          23 SQQALDLKGLRSD----PDLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILN   97 (162)
T ss_dssp             SSCCBCCCCCSSC----TTTTTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCC
T ss_pred             hhCeeecccCCCC----chhhhccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccc
Confidence            3445566554322    11333333444444433332 3344445678899999999988743  234566788899999


Q ss_pred             ccCCcccccCCccccCccCccccccCcCcccccccC-------hhhcCCCCCCeEe
Q 038699          100 LSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIP-------AQLGKLTRLQSLN  148 (237)
Q Consensus       100 l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~-------~~~~~~~~L~~L~  148 (237)
                      +++|.+....+-......+|+.+ ++.+|.+.....       ..+..+|+|+.||
T Consensus        98 Ls~N~i~~l~~l~~l~~~~L~~L-~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1          98 LSGNELKSERELDKIKGLKLEEL-WLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             CTTSCCCCGGGHHHHTTCCCSSC-CCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             cccCccccchhhhhhhcccccee-ecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            99998875433233344568888 899998865433       2256688999887

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.16  E-value=7e-07  Score=63.16  Aligned_cols=39  Identities=13%  Similarity=0.144  Sum_probs=20.4

Q ss_pred             hcCCCCCCeEeCcCCcCcC-------ccCccccCCCCCCEEEcCCC
Q 038699          138 LGKLTRLQSLNLSHNNLSG-------EIPASLSSMLSLVAVNLSYN  176 (237)
Q Consensus       138 ~~~~~~L~~L~l~~n~l~~-------~~~~~~~~~~~L~~L~l~~n  176 (237)
                      +...++|++|++++|.+..       .+...+...++|++|+++.+
T Consensus        96 L~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          96 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            3344556666666554331       12334445566777766554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.09  E-value=7.9e-07  Score=62.87  Aligned_cols=87  Identities=17%  Similarity=0.168  Sum_probs=48.7

Q ss_pred             CCCCCcEEEccCC-cCCCc----cCccccCCCCCCEEeccCCccccc----CcccccCCCCCCEEEccCCcCcCc----c
Q 038699           19 SLSQLVELHLSSN-QLSGE----IPAHIGNLTELSTLSLNGNNISGQ----IPEEIGGLLNLDSLDLSMNRLSGP----I   85 (237)
Q Consensus        19 ~l~~L~~L~L~~n-~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~i~~~----~   85 (237)
                      +.+.|++|+|+++ .+...    +..++...++|++|++++|.++..    +...+...+.|++|++++|.+.+.    +
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            4567777777763 35422    233445566677777777766532    223334456677777777766532    2


Q ss_pred             cccccCCCCCCEEEccCCcc
Q 038699           86 PNQIGELRDLRILNLSQNNL  105 (237)
Q Consensus        86 ~~~~~~l~~L~~L~l~~n~~  105 (237)
                      ...+...+.|++|++++|.+
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSS
T ss_pred             HHHHHhCCcCCEEECCCCcC
Confidence            23344555666666665543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.78  E-value=4e-06  Score=58.98  Aligned_cols=64  Identities=20%  Similarity=0.259  Sum_probs=30.9

Q ss_pred             CCCCCCEEeccC-Cccccc----CcccccCCCCCCEEEccCCcCcCc----ccccccCCCCCCEEEccCCccc
Q 038699           43 NLTELSTLSLNG-NNISGQ----IPEEIGGLLNLDSLDLSMNRLSGP----IPNQIGELRDLRILNLSQNNLI  106 (237)
Q Consensus        43 ~l~~L~~L~l~~-n~l~~~----~~~~~~~l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~l~~n~~~  106 (237)
                      +.+.|++|++++ +.++..    +...+...+.|++|++++|.+...    +.+.+...+.++.+++++|.+.
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            445666666665 334321    223334555666666666655422    1222334455555555555443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.65  E-value=5.9e-06  Score=58.08  Aligned_cols=90  Identities=18%  Similarity=0.189  Sum_probs=64.2

Q ss_pred             cCCCCCCcEEEccC-CcCCCc----cCccccCCCCCCEEeccCCccccc----CcccccCCCCCCEEEccCCcCcCc---
Q 038699           17 IGSLSQLVELHLSS-NQLSGE----IPAHIGNLTELSTLSLNGNNISGQ----IPEEIGGLLNLDSLDLSMNRLSGP---   84 (237)
Q Consensus        17 ~~~l~~L~~L~L~~-n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~i~~~---   84 (237)
                      ..+.+.|++|++++ +.++..    +..++...++|++|++++|.++..    +...+...++++.+++++|.+...   
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            45678999999998 457633    345566889999999999988743    334556678999999999988633   


Q ss_pred             -ccccccCCCCCCEEEcc--CCccc
Q 038699           85 -IPNQIGELRDLRILNLS--QNNLI  106 (237)
Q Consensus        85 -~~~~~~~l~~L~~L~l~--~n~~~  106 (237)
                       +...+...+.|+.++++  +|.+.
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~  117 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLG  117 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHHHhCccccEEeeccCCCcCc
Confidence             23455667778776554  44443