Citrus Sinensis ID: 038702
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 154 | 2.2.26 [Sep-21-2011] | |||||||
| Q4KLQ5 | 580 | WD repeat-containing prot | N/A | no | 0.922 | 0.244 | 0.307 | 4e-13 | |
| Q0UYV9 | 519 | WD repeat-containing prot | N/A | no | 0.941 | 0.279 | 0.323 | 4e-12 | |
| Q1E6Q0 | 525 | WD repeat-containing prot | N/A | no | 0.961 | 0.281 | 0.321 | 5e-12 | |
| A1DNV8 | 527 | WD repeat-containing prot | N/A | no | 0.961 | 0.280 | 0.298 | 6e-12 | |
| Q2HHH2 | 524 | WD repeat-containing prot | N/A | no | 0.967 | 0.284 | 0.313 | 9e-12 | |
| Q4WLU1 | 527 | WD repeat-containing prot | yes | no | 0.961 | 0.280 | 0.298 | 1e-11 | |
| Q7S1H9 | 521 | WD repeat-containing prot | N/A | no | 0.954 | 0.282 | 0.327 | 1e-11 | |
| B0Y8S0 | 528 | WD repeat-containing prot | N/A | no | 0.948 | 0.276 | 0.300 | 1e-11 | |
| A1CU75 | 531 | WD repeat-containing prot | N/A | no | 0.948 | 0.274 | 0.300 | 2e-11 | |
| P0CS56 | 595 | WD repeat-containing prot | yes | no | 0.792 | 0.205 | 0.298 | 2e-11 |
| >sp|Q4KLQ5|WDR76_XENLA WD repeat-containing protein 76 OS=Xenopus laevis GN=wdr76 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 73.9 bits (180), Expect = 4e-13, Method: Composition-based stats.
Identities = 47/153 (30%), Positives = 82/153 (53%), Gaps = 11/153 (7%)
Query: 8 GTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFEN 66
G CI+D+R + + H ++V SAYFSP +G+ + TT DD I ++ + +
Sbjct: 428 GDVCIFDVRQLKKKAQPVLSLTGHSKSVASAYFSPVTGNRILTTCADDYIRVYDSSSLCS 487
Query: 67 TAMI----HHNNQTGRWISSFRAIWG-WDDSCIFIGNMT--RTVEVISPAQRRSVATLQS 119
A + HNN TGRW++ FRA+W +SC +G+M R +EV + + + + S
Sbjct: 488 EAPLLTAFRHNNNTGRWLTRFRAVWDPKQESCFVVGSMARPRQIEVYNESGKLEHSFWDS 547
Query: 120 PYISAIPCRFHA-HPHQVGTLAGATGGGQVYVW 151
++ ++ C +A HP + L G G+++V+
Sbjct: 548 EHLGSV-CSINAMHPTR-NLLVGGNSSGRLHVF 578
|
Xenopus laevis (taxid: 8355) |
| >sp|Q0UYV9|YD156_PHANO WD repeat-containing protein SNOG_03055 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=SNOG_03055 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 70.5 bits (171), Expect = 4e-12, Method: Composition-based stats.
Identities = 57/176 (32%), Positives = 88/176 (50%), Gaps = 31/176 (17%)
Query: 1 MATSSTDGTACIWDLRSMAT--DKPEPTKVLSHKRAV---HSAYFSPSGSSLATTSFDDT 55
+AT+S D T IWDLR ++ D P V H+ + H+A+ S +AT S+DDT
Sbjct: 349 VATASLDRTLKIWDLRKISGKGDSRLPALVGEHESRLSVSHAAW--NSAGQVATASYDDT 406
Query: 56 IGI--------W------SGVNFENTAMIHHNNQTGRWISSFRAIW------GWDDSCIF 95
I I W + + + + ++ HNNQTGRW++ RA W G C
Sbjct: 407 IKIHDFSKSAEWATGTALTDADMKPSVVVPHNNQTGRWVTILRAQWQQFPQDGVQRFC-- 464
Query: 96 IGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 151
IGNM R V++ + A+ + +A L I+A+P HP + +A T G++ +W
Sbjct: 465 IGNMNRFVDIYT-AKGQQLAQLGGDGITAVPAVAKFHP-TLDWVAAGTASGKLCLW 518
|
Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) (taxid: 321614) |
| >sp|Q1E6Q0|YD156_COCIM WD repeat-containing protein CIMG_01763 OS=Coccidioides immitis (strain RS) GN=CIMG_01763 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 83/171 (48%), Gaps = 23/171 (13%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW- 59
MAT+S D T +WDLR ++T P+P +V A F+ G +ATTS+D++I I+
Sbjct: 357 MATASLDRTMKVWDLRHLSTKHPKPVGEHESSLSVSHAAFNQKG-QIATTSYDNSIKIYD 415
Query: 60 ---------------SGVNFENTAMIHHNNQTGRWISSFRAIW-GWDDSCIF---IGNMT 100
S A+I HN QTG+W++ R W DS + IGNM
Sbjct: 416 LASKGLKDWKPNHTLSEDEMAPDAVIRHNCQTGKWVTILRPQWQACPDSPVERFCIGNMN 475
Query: 101 RTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 151
R V++ + + +A L + I+A+P H Q + G TG +V +W
Sbjct: 476 RFVDIYT-STGEQLAQLGADVITAVPAVAVFHRTQ-NWVVGGTGSAKVCLW 524
|
Coccidioides immitis (strain RS) (taxid: 246410) |
| >sp|A1DNV8|YD156_NEOFI WD repeat-containing protein NFIA_058290 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=NFIA_058290 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 82/171 (47%), Gaps = 23/171 (13%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW- 59
AT+S D T +WD+R ++ D+P P + +V A F+ +G +AT+S+DDT+ I+
Sbjct: 359 FATASLDRTMRLWDIRKLSHDEPVPVGEHVSRLSVSHAAFNSAG-QIATSSYDDTLKIYD 417
Query: 60 ---------------SGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIF----IGNMT 100
S + ++ HN QTGRW++ R W + IGNM
Sbjct: 418 FGSKGIAAWKPGHTLSDAEMKPDTIVRHNCQTGRWVTILRPQWQANPQSPIQRFCIGNMN 477
Query: 101 RTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 151
R V+V S + + +A L I+A+P H +AG T G++ +W
Sbjct: 478 RFVDVYSSSGDQ-LAQLGGDGITAVPAVAVFH-RSTNWIAGGTASGKICLW 526
|
Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) (taxid: 331117) |
| >sp|Q2HHH2|YD156_CHAGB WD repeat-containing protein CHGG_00332 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=CHGG_00332 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 80/172 (46%), Gaps = 23/172 (13%)
Query: 1 MATSSTDGTACIWDLRSM--ATDKPEPTKVLSHKRAVHSAYFS-PSGSSLATTSFDDTIG 57
+AT+S D T IWDLR + D P + +H + ++ S S +AT+S+DD I
Sbjct: 354 VATASLDRTLKIWDLRKIQGKGDARAPALLGTHDSRLSVSHASWSSAGHVATSSYDDRIK 413
Query: 58 IW--------------SGVNFENTAMIHHNNQTGRWISSFRAIWGWDD----SCIFIGNM 99
I+ + E I HNNQTGRW++ + W IGNM
Sbjct: 414 IYNFPDADKWTAGAALTEAQMEPARQIPHNNQTGRWVTILKPQWQRSPRDGLQKFVIGNM 473
Query: 100 TRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 151
R V+V + A +A L I+A+P H HP + +AG G G++ +W
Sbjct: 474 NRFVDVFA-ADGEQLAQLGGDGITAVPAVAHFHP-TMDWVAGGNGSGKLCLW 523
|
Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) (taxid: 306901) |
| >sp|Q4WLU1|YD156_ASPFU WD repeat-containing protein AFUA_6G12330 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=AFUA_6G12330 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 23/171 (13%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW- 59
AT+S D T +WD+R ++ D P P + +V A F+ +G +AT+S+DDT+ I+
Sbjct: 359 FATASLDRTMRLWDIRKLSHDDPVPVGEHVSRLSVSHAAFNSAG-QIATSSYDDTLKIYD 417
Query: 60 ---------------SGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSC----IFIGNMT 100
S + ++ HN QTGRW++ R W + IGNM
Sbjct: 418 FGSKGIAAWEPGYTLSDAEMKPDTIVRHNCQTGRWVTILRPQWQANPQSSIQRFCIGNMN 477
Query: 101 RTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 151
R V+V S + + +A L I+A+P H +AG T G++ +W
Sbjct: 478 RFVDVYSSSGDQ-LAQLGGDGITAVPAVAVFH-RSTNWIAGGTASGKICLW 526
|
Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879) |
| >sp|Q7S1H9|YD156_NEUCR WD repeat-containing protein NCU09302/NCU11420 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=NCU09302 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 80/174 (45%), Gaps = 27/174 (15%)
Query: 1 MATSSTDGTACIWDLRSM--ATDKPEPTKVLSHK-RAVHSAYFSPSGSSLATTSFDDTIG 57
+AT+S D T IWDLR + D P + H+ R S S +AT+S+DD I
Sbjct: 351 VATASLDRTLKIWDLRKITGKGDLRHPALLGEHESRLSVSHASWSSSGHIATSSYDDRIK 410
Query: 58 IWS--------------GVNFENTAMIHHNNQTGRWISSFRAIW------GWDDSCIFIG 97
I+S + T I HNNQTGRW++ + W GW IG
Sbjct: 411 IYSFPSAGEWKAGHDIPAKEMQPTVEIPHNNQTGRWVTILKPQWQRNPQDGW--QKFAIG 468
Query: 98 NMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 151
NM R V+V + +A L I+A+P H HP + +AG T G++ +W
Sbjct: 469 NMNRFVDVYA-EDGEQLAQLGGDGITAVPAVAHFHPTK-DWVAGGTASGKLCLW 520
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Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110) |
| >sp|B0Y8S0|YD156_ASPFC WD repeat-containing protein AFUB_078330 OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) GN=AFUB_078330 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 83/173 (47%), Gaps = 27/173 (15%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW- 59
AT+S D T +WD+R ++ D P P + +V A F+ +G +AT+S+DDT+ I+
Sbjct: 360 FATASLDRTMRLWDIRKLSHDDPVPVGEHVSRLSVSHAAFNSAG-QIATSSYDDTLKIYD 418
Query: 60 ---------------SGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSC----IFIGNMT 100
S + ++ HN QTGRW++ R W + IGNM
Sbjct: 419 FGSKGIAAWEPGYTLSDAEMKPDTIVRHNCQTGRWVTILRPQWQANPQSSIQRFCIGNMN 478
Query: 101 RTVEVISPAQRRSVATLQSPYISAIP--CRFHAHPHQVGTLAGATGGGQVYVW 151
R V+V S + + +A L I+A+P FH + + AG T G++ +W
Sbjct: 479 RFVDVYSSSGDQ-LAQLGGDGITAVPAVAVFHCSTNWI---AGGTASGKICLW 527
|
Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) (taxid: 451804) |
| >sp|A1CU75|YD156_ASPCL WD repeat-containing protein ACLA_085580 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=ACLA_085580 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 83/173 (47%), Gaps = 27/173 (15%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW- 59
AT+S D T +WDLR ++ D P P + +V A F+ +G +AT+S+DD++ I+
Sbjct: 363 FATASLDRTMRLWDLRKLSHDDPLPVGEHLSRLSVSHAAFNSAG-QVATSSYDDSLKIYD 421
Query: 60 ---------------SGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSC----IFIGNMT 100
S + ++ HN QTGRW++ R W + IGNM
Sbjct: 422 FGAKGIASWEQGHTLSDAEMKPDTVVRHNCQTGRWVTILRPQWQANPQSHIQRFCIGNMN 481
Query: 101 RTVEVISPAQRRSVATLQSPYISAIP--CRFHAHPHQVGTLAGATGGGQVYVW 151
R V+V S + + +A L I+A+P FH + + AG T G++ +W
Sbjct: 482 RFVDVYSSSGDQ-LAQLGGDGITAVPAVAVFHRSKNWI---AGGTASGKICLW 530
|
Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) (taxid: 344612) |
| >sp|P0CS56|YD156_CRYNJ WD repeat-containing protein CNI03070 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CNI03070 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 75/144 (52%), Gaps = 22/144 (15%)
Query: 31 HKRAVHSAYFSPSGSSLATTSFDDTIGIW------SGVN------------FENTAMIHH 72
H ++ SAY+ P G + TTS+DD + ++ S V+ F+ T ++ H
Sbjct: 449 HGKSCSSAYWDPWGRRILTTSYDDHLRVFNIDPGSSLVDDRAVGSLLQPNGFKPTKVVRH 508
Query: 73 NNQTGRWISSFRAIWGWDDSCI---FIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRF 129
N QTGRW++ RA W + + +GNM RT++V+S A + L + ++A+P
Sbjct: 509 NCQTGRWLTILRAQWSLNMEYMPHFTVGNMKRTLDVVS-ATGEKIVGLWTDDVTAVPTVT 567
Query: 130 HAHPHQVGTLAGATGGGQVYVWTS 153
+HP+ V + G G++ +W+S
Sbjct: 568 ASHPNIVDRVVGGNTSGRIQLWSS 591
|
Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 154 | ||||||
| 449457991 | 545 | PREDICTED: WD repeat-containing protein | 0.987 | 0.278 | 0.736 | 4e-64 | |
| 224142439 | 513 | predicted protein [Populus trichocarpa] | 0.993 | 0.298 | 0.712 | 1e-63 | |
| 449505377 | 521 | PREDICTED: WD repeat-containing protein | 0.987 | 0.291 | 0.736 | 1e-63 | |
| 255565065 | 530 | protein with unknown function [Ricinus c | 0.993 | 0.288 | 0.712 | 4e-60 | |
| 225462990 | 489 | PREDICTED: WD repeat-containing protein | 0.993 | 0.312 | 0.679 | 2e-58 | |
| 296084594 | 450 | unnamed protein product [Vitis vinifera] | 0.993 | 0.34 | 0.679 | 5e-58 | |
| 297839865 | 520 | transducin family protein [Arabidopsis l | 0.993 | 0.294 | 0.653 | 4e-57 | |
| 15220206 | 516 | drought-sensitive 1 protein [Arabidopsis | 0.987 | 0.294 | 0.647 | 5e-56 | |
| 356562884 | 460 | PREDICTED: WD repeat-containing protein | 0.993 | 0.332 | 0.647 | 3e-54 | |
| 356548457 | 459 | PREDICTED: WD repeat-containing protein | 0.987 | 0.331 | 0.651 | 3e-54 |
| >gi|449457991|ref|XP_004146731.1| PREDICTED: WD repeat-containing protein 76-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats.
Identities = 112/152 (73%), Positives = 132/152 (86%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
MATSS+DGTACIWDLRS++ +KP+ K ++HK+A+HSAYFSPSG LATTSFDDT+GI+
Sbjct: 389 MATSSSDGTACIWDLRSVSDEKPQTLKTITHKKAIHSAYFSPSGRFLATTSFDDTVGIYG 448
Query: 61 GVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSP 120
GVNF++T++I H+NQTGRWISSFRAIWGWDDS IFIGNM R V+VIS A R+ V LQSP
Sbjct: 449 GVNFKDTSLIPHDNQTGRWISSFRAIWGWDDSYIFIGNMKRAVDVISRAYRKRVFVLQSP 508
Query: 121 YISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152
ISAIPCRF AHP+ VGTLAGAT GGQVY+WT
Sbjct: 509 KISAIPCRFDAHPYDVGTLAGATSGGQVYMWT 540
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224142439|ref|XP_002324565.1| predicted protein [Populus trichocarpa] gi|222865999|gb|EEF03130.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 247 bits (631), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 109/153 (71%), Positives = 133/153 (86%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
MATSS+D T C+WDLR + KP+ K+++H+RAVHSAYFSPSGSSLA+TSFDDT+GI S
Sbjct: 360 MATSSSDATVCLWDLRKVDAGKPKSLKIVNHERAVHSAYFSPSGSSLASTSFDDTVGILS 419
Query: 61 GVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSP 120
GVNFE+ + +HH NQTGRWISSFRA WGWDDS +++GNM R V++ISPAQRR + TLQSP
Sbjct: 420 GVNFEDASRVHHCNQTGRWISSFRATWGWDDSFVYVGNMKRGVDIISPAQRRVIRTLQSP 479
Query: 121 YISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153
+++AIPCRFHAHP +VG LAGATGGGQVY+WTS
Sbjct: 480 HMTAIPCRFHAHPFRVGMLAGATGGGQVYIWTS 512
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449505377|ref|XP_004162450.1| PREDICTED: WD repeat-containing protein 76-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats.
Identities = 112/152 (73%), Positives = 132/152 (86%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
MATSS+DGTACIWDLRS++ +KP+ K ++HK+A+HSAYFSPSG LATTSFDDT+GI+
Sbjct: 365 MATSSSDGTACIWDLRSVSDEKPQTLKTITHKKAIHSAYFSPSGRFLATTSFDDTVGIYG 424
Query: 61 GVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSP 120
GVNF++T++I H+NQTGRWISSFRAIWGWDDS IFIGNM R V+VIS A R+ V LQSP
Sbjct: 425 GVNFKDTSLIPHDNQTGRWISSFRAIWGWDDSYIFIGNMKRAVDVISRAYRKRVFVLQSP 484
Query: 121 YISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152
ISAIPCRF AHP+ VGTLAGAT GGQVY+WT
Sbjct: 485 KISAIPCRFDAHPYDVGTLAGATSGGQVYMWT 516
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255565065|ref|XP_002523525.1| protein with unknown function [Ricinus communis] gi|223537232|gb|EEF38864.1| protein with unknown function [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 235 bits (600), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 109/153 (71%), Positives = 129/153 (84%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
MATSSTDGTAC+WD+RS++ KP+ K++SH RAVHSAYFSPSGS LATTS D+T+G+ S
Sbjct: 377 MATSSTDGTACLWDIRSVSPAKPKSLKIVSHNRAVHSAYFSPSGSYLATTSPDNTVGVLS 436
Query: 61 GVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSP 120
+FE+T I H NQTGRWISSFRAIWGWDDS IFIGNM R V++IS QRR++ TLQSP
Sbjct: 437 TADFEDTCRIDHYNQTGRWISSFRAIWGWDDSYIFIGNMKRGVDIISRPQRRAILTLQSP 496
Query: 121 YISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153
++SAIPCRF AHP+ VG LAGAT GGQVY+WTS
Sbjct: 497 HMSAIPCRFDAHPYNVGMLAGATSGGQVYIWTS 529
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225462990|ref|XP_002264232.1| PREDICTED: WD repeat-containing protein 76-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats.
Identities = 104/153 (67%), Positives = 127/153 (83%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
MATSS+D TACIWDLR + +DKP+ K +SH RAVHSAYFSPSGSSLATTS ++ +G+
Sbjct: 336 MATSSSDATACIWDLRKIDSDKPKTLKTVSHARAVHSAYFSPSGSSLATTSVENKVGLLG 395
Query: 61 GVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSP 120
GVNFE+ +MI+H N RWISSFRAIWGWDDS +FIGNM R V++IS A R++V TLQS
Sbjct: 396 GVNFEDLSMIYHENHMCRWISSFRAIWGWDDSYLFIGNMKRGVDIISTACRKTVMTLQSA 455
Query: 121 YISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153
++SAIPCRF AHP++VG LAGATGGGQ+Y+W S
Sbjct: 456 HMSAIPCRFSAHPYKVGMLAGATGGGQIYMWKS 488
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296084594|emb|CBI25615.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 228 bits (582), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 104/153 (67%), Positives = 127/153 (83%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
MATSS+D TACIWDLR + +DKP+ K +SH RAVHSAYFSPSGSSLATTS ++ +G+
Sbjct: 297 MATSSSDATACIWDLRKIDSDKPKTLKTVSHARAVHSAYFSPSGSSLATTSVENKVGLLG 356
Query: 61 GVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSP 120
GVNFE+ +MI+H N RWISSFRAIWGWDDS +FIGNM R V++IS A R++V TLQS
Sbjct: 357 GVNFEDLSMIYHENHMCRWISSFRAIWGWDDSYLFIGNMKRGVDIISTACRKTVMTLQSA 416
Query: 121 YISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153
++SAIPCRF AHP++VG LAGATGGGQ+Y+W S
Sbjct: 417 HMSAIPCRFSAHPYKVGMLAGATGGGQIYMWKS 449
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297839865|ref|XP_002887814.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297333655|gb|EFH64073.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats.
Identities = 100/153 (65%), Positives = 121/153 (79%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
MATSSTDGTAC+WDLRSM KP+ L+H RAVHSAYFSPSG LATTS D+ IGI S
Sbjct: 367 MATSSTDGTACLWDLRSMGAKKPKILTTLNHSRAVHSAYFSPSGLLLATTSLDNYIGILS 426
Query: 61 GVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSP 120
G NFENT I+HNN T RWIS FRA+WGWDDS I++GN+++ ++VI+P +R+V L +P
Sbjct: 427 GANFENTYKIYHNNNTSRWISKFRAVWGWDDSYIYVGNLSKKIDVINPKLKRTVMELHNP 486
Query: 121 YISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153
+ AIPCR H HP+ VGTLAG+T GGQVYVWT+
Sbjct: 487 LMKAIPCRIHCHPYNVGTLAGSTAGGQVYVWTA 519
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15220206|ref|NP_178186.1| drought-sensitive 1 protein [Arabidopsis thaliana] gi|6503282|gb|AAF14658.1|AC011713_6 Contains similarity to gb|AF092102 G-protein beta subunit git5p from Schizosaccharomyces pombe and contains 2 PF|00400WD domain, G-beta repeat domains [Arabidopsis thaliana] gi|332198318|gb|AEE36439.1| drought-sensitive 1 protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 221 bits (564), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 99/153 (64%), Positives = 122/153 (79%), Gaps = 1/153 (0%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
MATSSTDGTAC+WDLRSM KP+ ++H RAVHSAYFSPSG SLATTS D+ IG+ S
Sbjct: 364 MATSSTDGTACLWDLRSMGAKKPKTLSTVNHSRAVHSAYFSPSGLSLATTSLDNYIGVLS 423
Query: 61 GVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSP 120
G NFENT MI+HNN T RWIS F+A+WGWDDS I++GN+++ ++VI+P +R+V L +P
Sbjct: 424 GANFENTCMIYHNN-TSRWISKFKAVWGWDDSYIYVGNLSKKIDVINPKLKRTVMELHNP 482
Query: 121 YISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153
AIPCR H HP+ VGTLAG+T GGQVYVWT+
Sbjct: 483 LQRAIPCRIHCHPYNVGTLAGSTAGGQVYVWTT 515
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356562884|ref|XP_003549698.1| PREDICTED: WD repeat-containing protein 76-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 216 bits (550), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 99/153 (64%), Positives = 122/153 (79%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
+ATSSTDGTAC WDLR DK + +HKR+V SAYFSPSG SLATTS D+TIGI+S
Sbjct: 307 VATSSTDGTACTWDLRYTDGDKLRALRTFTHKRSVQSAYFSPSGCSLATTSLDNTIGIYS 366
Query: 61 GVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSP 120
GVN E+ A+I+HNN TGRW+S+FRA WGWDDS +F+GNM R V+V+S +R+ V TL+S
Sbjct: 367 GVNLEDAAVINHNNLTGRWLSTFRAKWGWDDSYLFVGNMKRGVDVVSSVERKIVMTLESQ 426
Query: 121 YISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153
++SAIPCRF H ++VG LAGAT GGQVY+WTS
Sbjct: 427 HMSAIPCRFDTHSYEVGMLAGATSGGQVYIWTS 459
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356548457|ref|XP_003542618.1| PREDICTED: WD repeat-containing protein 76-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 216 bits (549), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 99/152 (65%), Positives = 121/152 (79%)
Query: 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSG 61
ATSSTDGTAC WDLR DK + +HKR+V SAYFSPSG SLATTS D+TI I+SG
Sbjct: 307 ATSSTDGTACTWDLRYTDGDKLTALRTFTHKRSVQSAYFSPSGCSLATTSLDNTIAIYSG 366
Query: 62 VNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPY 121
VN E+ A+I+HNNQTGRW+S+FRA WGWDDS +F+GN+ R V+V+S QR+ V TL+S +
Sbjct: 367 VNMEDAAVINHNNQTGRWLSTFRAKWGWDDSYLFVGNLKRGVDVVSAVQRKMVMTLESQH 426
Query: 122 ISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153
+SAIPCRF H ++VG LAGAT GGQVY+WTS
Sbjct: 427 MSAIPCRFDTHSYEVGMLAGATSGGQVYIWTS 458
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 154 | ||||||
| TAIR|locus:2025762 | 516 | DRS1 "AT1G80710" [Arabidopsis | 0.987 | 0.294 | 0.647 | 2.1e-54 | |
| MGI|MGI:1926186 | 622 | Wdr76 "WD repeat domain 76" [M | 0.889 | 0.220 | 0.286 | 1.3e-10 | |
| TAIR|locus:2178808 | 557 | DDB2 "AT5G58760" [Arabidopsis | 0.941 | 0.260 | 0.307 | 7.8e-10 | |
| ZFIN|ZDB-GENE-030131-4513 | 535 | wdr76 "WD repeat domain 76" [D | 0.584 | 0.168 | 0.371 | 2e-09 | |
| MGI|MGI:1355314 | 432 | Ddb2 "damage specific DNA bind | 0.980 | 0.349 | 0.257 | 1.3e-08 | |
| UNIPROTKB|Q0P593 | 415 | WDR69 "Outer row dynein assemb | 0.694 | 0.257 | 0.322 | 5.4e-08 | |
| RGD|1561436 | 415 | LOC363267 "hypothetical protei | 0.896 | 0.332 | 0.3 | 6.9e-08 | |
| ASPGD|ASPL0000032162 | 1364 | AN8468 [Emericella nidulans (t | 0.915 | 0.103 | 0.294 | 1e-07 | |
| UNIPROTKB|Q5ZJL7 | 507 | DDB2 "DNA damage-binding prote | 0.974 | 0.295 | 0.284 | 1.6e-07 | |
| SGD|S000002315 | 522 | CMR1 "DNA-binding protein with | 0.863 | 0.254 | 0.251 | 2.1e-07 |
| TAIR|locus:2025762 DRS1 "AT1G80710" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
Identities = 99/153 (64%), Positives = 122/153 (79%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
MATSSTDGTAC+WDLRSM KP+ ++H RAVHSAYFSPSG SLATTS D+ IG+ S
Sbjct: 364 MATSSTDGTACLWDLRSMGAKKPKTLSTVNHSRAVHSAYFSPSGLSLATTSLDNYIGVLS 423
Query: 61 GVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSP 120
G NFENT MI+HNN T RWIS F+A+WGWDDS I++GN+++ ++VI+P +R+V L +P
Sbjct: 424 GANFENTCMIYHNN-TSRWISKFKAVWGWDDSYIYVGNLSKKIDVINPKLKRTVMELHNP 482
Query: 121 YISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153
AIPCR H HP+ VGTLAG+T GGQVYVWT+
Sbjct: 483 LQRAIPCRIHCHPYNVGTLAGSTAGGQVYVWTT 515
|
|
| MGI|MGI:1926186 Wdr76 "WD repeat domain 76" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 159 (61.0 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 43/150 (28%), Positives = 80/150 (53%)
Query: 12 IWDLRSMATDKPEPTKVLS-HKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENT-- 67
++D R + + +P L+ H +++ SAYFSP +G+ + TT D + ++ + +
Sbjct: 471 VYDARFLKSRGSQPLISLTEHSKSIASAYFSPVTGNRVVTTCADCKLRVFDSSSISSQLP 530
Query: 68 --AMIHHNNQTGRWISSFRAIWG-WDDSCIFIGNMT--RTVEVISPAQRRSVATLQSPYI 122
+ I HN TGRW++ F+A+W + C +G+M R VEV + + +V +L +
Sbjct: 531 LLSTIRHNTVTGRWLTRFQAVWDPKQEDCFIVGSMDHPRRVEVFHESGK-NVHSLWGECL 589
Query: 123 SAIPCRFHA-HPHQVGTLAGATGGGQVYVW 151
++ C A HP + LAG G+++V+
Sbjct: 590 VSV-CSLSAVHPTRY-ILAGGNSSGKLHVF 617
|
|
| TAIR|locus:2178808 DDB2 "AT5G58760" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 151 (58.2 bits), Expect = 7.8e-10, P = 7.8e-10
Identities = 52/169 (30%), Positives = 82/169 (48%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPT-KVLSHKRAVHSAYFSPS-GSSLATTSFDDTIGI 58
+ + D A IWD+R + +P+ + L+HKR V+SAYFSPS G+ + TT D+ I I
Sbjct: 328 LLSCGNDHFARIWDMRKL---QPKASLHDLAHKRVVNSAYFSPSSGTKILTTCQDNRIRI 384
Query: 59 WSGVNFENTAM----IHHNNQTGRWISSFRAIWGWDD---SCIFIG-----NMTRT---- 102
W + F N + I H+N R ++ F+A W D S I IG N T
Sbjct: 385 WDSI-FGNLDLPSREIVHSNDFNRHLTPFKAEWDPKDTSESLIVIGRYISENYNGTALHP 443
Query: 103 VEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 151
++ I + + VA + P I+ I HP +G++ +++W
Sbjct: 444 IDFIDASNGQLVAEVMDPNITTITPVNKLHPRDDVLASGSSRS--LFIW 490
|
|
| ZFIN|ZDB-GENE-030131-4513 wdr76 "WD repeat domain 76" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 147 (56.8 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 36/97 (37%), Positives = 51/97 (52%)
Query: 12 IWDLRSMAT-DKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENT-- 67
I+DLR + + P ++ H R+ SA+FSP +GS + TT DD I ++ +
Sbjct: 404 IYDLRHLKKRNSPAVCELYGHSRSTSSAFFSPLTGSRVLTTCMDDCIRVFDSSQIAGSIP 463
Query: 68 AM--IHHNNQTGRWISSFRAIWG-WDDSCIFIGNMTR 101
A+ I HN QTGRW+S A+W C IG M R
Sbjct: 464 ALTSIRHNMQTGRWLSRLCAVWDPKHQECFVIGTMDR 500
|
|
| MGI|MGI:1355314 Ddb2 "damage specific DNA binding protein 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 138 (53.6 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 43/167 (25%), Positives = 79/167 (47%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
+AT+S D T IWDLR + K L H+ V++A FSP G+ L TT ++ I ++S
Sbjct: 258 LATASIDQTVKIWDLRQIK-GKDSFLYSLPHRHPVNAACFSPDGARLLTTDQNNEIRVYS 316
Query: 61 GVNFENTA-MIHHNNQTGRWISSFRAIWGWDDSCIFIG-----NMT-------RTVEVIS 107
+++ +I H ++ + ++ +A W + I +G N+ RT++V
Sbjct: 317 ASQWDSPLNLISHPHRHFQHLTPIKATWHSRHNLIVVGRYPDPNLKSCVPYELRTIDVFD 376
Query: 108 PAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154
+ + + L P S I +P +G +T G + +W+ +
Sbjct: 377 GSSGKMMCQLYDPGYSGITSLNEFNP--MGDTLASTMGYHILIWSQE 421
|
|
| UNIPROTKB|Q0P593 WDR69 "Outer row dynein assembly protein 16 homolog" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 132 (51.5 bits), Expect = 5.4e-08, P = 5.4e-08
Identities = 38/118 (32%), Positives = 58/118 (49%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
+AT S D TA +WD++S E + H + S F+ SG+ + T SFD T+ +W
Sbjct: 192 VATGSMDTTAKLWDIQS----GEEVFTLTGHSAEIISLSFNTSGNRIITGSFDHTVTVWE 247
Query: 61 GVNFENT-AMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATL 117
+I H + ISS A++ WD S I G+M +T ++ + VATL
Sbjct: 248 ADTGRKVYTLIGHCAE----ISS--AVFNWDCSLILTGSMDKTCKLWDAVNGKCVATL 299
|
|
| RGD|1561436 LOC363267 "hypothetical protein LOC363267" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 131 (51.2 bits), Expect = 6.9e-08, P = 6.9e-08
Identities = 45/150 (30%), Positives = 65/150 (43%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
+AT S D TA +WD++S E + H + S F SG + T SFD T+ +W
Sbjct: 192 VATGSMDTTAKLWDIQS----GEEVVTLTGHLAEIISLSFDTSGDRIITGSFDHTVVVWD 247
Query: 61 GVNFENT-AMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQS 119
+I H + ISS A++ WD S I G+M +T + + VATL
Sbjct: 248 ASTGRKVHTLIGHCAE----ISS--ALFSWDCSLILTGSMDKTCMLWDATSGKCVATLTG 301
Query: 120 PYISAIPCRFHAHPHQVGTLAGATGGGQVY 149
+ F + T A A G +VY
Sbjct: 302 HDDEILDSCFDYTGKLIAT-ASADGTARVY 330
|
|
| ASPGD|ASPL0000032162 AN8468 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 136 (52.9 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 45/153 (29%), Positives = 73/153 (47%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
+A++S D T IWDL AT + + T + SH ++V S FSP G LA++S D TI +W+
Sbjct: 849 LASASDDSTIKIWDL---ATGELQQT-LDSHSQSVRSVAFSPDGKLLASSSLDSTIKVWN 904
Query: 61 GVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSP 120
E + ++G W+ S + D + G+ TV++ +PA + TL+
Sbjct: 905 PATGELQQSLE--GRSG-WVKS--VAFSPDGKKLASGSEKNTVKLWNPATGELLQTLEGH 959
Query: 121 YISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153
S F Q LA ++ + +W S
Sbjct: 960 SQSVRSVAFSPDGKQ---LASSSSDTTIKLWNS 989
|
|
| UNIPROTKB|Q5ZJL7 DDB2 "DNA damage-binding protein 2" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 129 (50.5 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 48/169 (28%), Positives = 79/169 (46%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPS-GSSLATTSFDDTIGIW 59
+AT+S D T IWDLR++ DK VL H + V++AYFSP+ G+ L +T + I ++
Sbjct: 278 LATASVDQTVKIWDLRNIK-DKANFLHVLPHDKPVNAAYFSPTDGAKLLSTDQRNEIRVY 336
Query: 60 SGVNFENTA-MIHHNNQTGRWISSFRAIWGWDDSCIFIG------------NMTRTVEVI 106
S ++ +I H ++ + ++ +A W I +G N RTV++
Sbjct: 337 SCSDWTKPQHLIPHPHRQFQHLTPIKATWHPRYDLIVVGRYPDPKFPGYTVNELRTVDIF 396
Query: 107 SPAQRRSVATLQSPYISAIPCRFHAHPHQVG-TLAGATGGGQVYVWTSD 154
V L P S I +P +G TLA G + +W+ +
Sbjct: 397 DGNTGEMVCQLYDPNASGIISLNKFNP--MGDTLASGMGFN-ILIWSRE 442
|
|
| SGD|S000002315 CMR1 "DNA-binding protein with preference for UV-damaged DNA" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 128 (50.1 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 37/147 (25%), Positives = 68/147 (46%)
Query: 17 SMATDKP--EPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS-------GVNFENT 67
S D P E + +V + +SP+ +L +DDTI ++ E
Sbjct: 373 SQYEDYPSHEIVSTYDSRLSVSAVSYSPTDGTLVCNGYDDTIRLFDVKSRDHLSAKLEPK 432
Query: 68 AMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPC 127
I HN QTGRW S +A + + + I NM R +++ + ++ + +A L + + +P
Sbjct: 433 LTIQHNCQTGRWTSILKARFKPNKNVFAIANMKRAIDIYN-SEGQQLAHLPT---ATVPA 488
Query: 128 RFHAHPHQVGTLAGATGGGQVYVWTSD 154
HP + +AG G+++++T D
Sbjct: 489 VISWHPLR-NWIAGGNSSGKIFLFTDD 514
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | eugene3.00181018 | hypothetical protein (513 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 154 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-08 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 7e-07 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 8e-07 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-05 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-05 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 6e-05 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-04 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 5e-04 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 0.002 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 1e-08
Identities = 39/151 (25%), Positives = 61/151 (40%), Gaps = 25/151 (16%)
Query: 2 ATSSTDGTACIWDLRSMATDKPEPTKVLS-HKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
A+SS DGT +WDLR+ + L+ H V+S FSP G L ++S D TI +W
Sbjct: 151 ASSSQDGTIKLWDLRTG-----KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWD 205
Query: 61 GVNFENTAMIH-HNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQS 119
+ + H N ++S + D + G+ T+ V V TL
Sbjct: 206 LSTGKCLGTLRGHEN----GVNS--VAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS- 258
Query: 120 PYISAIPCRFHAHPHQVGTLAGATGGGQVYV 150
H + V +LA + G ++
Sbjct: 259 -----------GHTNSVTSLAWSPDGKRLAS 278
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 7e-07
Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLS-HKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
+A+ S DGT +WDLR+ E + LS H +V S +SP G LA+ S D TI IW
Sbjct: 234 LASGSEDGTIRVWDLRT-----GECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIW 288
Query: 60 S 60
Sbjct: 289 D 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 8e-07
Identities = 31/151 (20%), Positives = 61/151 (40%), Gaps = 14/151 (9%)
Query: 2 ATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
++SS D T +WD+ + + L H V+S FSP G+ +A++S D TI +W
Sbjct: 109 SSSSRDKTIKVWDVET-----GKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWD 163
Query: 61 GVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSP 120
+ A + + ++ + D + + T+++ + + + TL+
Sbjct: 164 LRTGKCVATLTGHTGEVNSVA-----FSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH 218
Query: 121 YISAIPCRFHAHPHQVGTLAGATGGGQVYVW 151
F + LA + G + VW
Sbjct: 219 ENGVNSVAFSPDGY---LLASGSEDGTIRVW 246
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 2e-05
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 13/119 (10%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
+A+ S+D T +WDL E + L H V S FSP G L+++S D TI +W
Sbjct: 66 LASGSSDKTIRLWDLE-----TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120
Query: 60 SGVNFEN-TAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATL 117
+ T + H + W++S + D + + + T+++ + VATL
Sbjct: 121 DVETGKCLTTLRGHTD----WVNSVA--FSPDGTFVASSSQDGTIKLWDLRTGKCVATL 173
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 3e-05
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
+ +SS+DGT +WDL + + L H+ V+S FSP G LA+ S D TI +W
Sbjct: 192 LLSSSSDGTIKLWDLST-----GKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVW 246
Query: 60 SGVNFENTAMIH-HNN 74
E + H N
Sbjct: 247 DLRTGECVQTLSGHTN 262
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.6 bits (96), Expect = 6e-05
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
+A+ S+DGT +WDLRS + H +V S FSP G LA+ S D T+ +W
Sbjct: 256 LASGSSDGTIRLWDLRS---SSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWD 312
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 4e-04
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
+AT S DGT +WDL T + T H V S G+ LA+ S D TI +W
Sbjct: 24 LATGSGDGTIKVWDL---ETGELLRTLKG-HTGPVRDVAASADGTYLASGSSDKTIRLWD 79
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 38.9 bits (89), Expect = 5e-04
Identities = 36/151 (23%), Positives = 62/151 (41%), Gaps = 8/151 (5%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
+A+ S+DGT +WDL T K + + H +V S+ FSP GS LA+ S D TI +W
Sbjct: 214 IASGSSDGTIRLWDLS---TGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWD 269
Query: 61 GVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSP 120
++ +G S + D + G+ TV + + +++L
Sbjct: 270 ----LRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLK 325
Query: 121 YISAIPCRFHAHPHQVGTLAGATGGGQVYVW 151
P ++G + G + +W
Sbjct: 326 GHEGPVSSLSFSPDGSLLVSGGSDDGTIRLW 356
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 37.0 bits (84), Expect = 0.002
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
+++ STDGT +WDL + + + H V S FSP G SLA+ S D+TI +W
Sbjct: 385 VSSGSTDGTVRLWDLSTGSLLRNLD----GHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440
|
Length = 466 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 154 | |||
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.97 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.97 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.97 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.97 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.97 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.96 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.96 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.96 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.96 | |
| PTZ00421 | 493 | coronin; Provisional | 99.95 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.95 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.95 | |
| PTZ00420 | 568 | coronin; Provisional | 99.95 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.95 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.94 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.94 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.94 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.94 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.94 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.94 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.94 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.94 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.94 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.94 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.93 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.93 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.93 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.93 | |
| PTZ00421 | 493 | coronin; Provisional | 99.93 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.93 | |
| PTZ00420 | 568 | coronin; Provisional | 99.92 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.92 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.92 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.92 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.92 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.92 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.92 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.92 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.92 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.92 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.91 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.91 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.91 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.91 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.91 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.91 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.91 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.91 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.91 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.9 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.9 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.9 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.9 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.9 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.9 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.9 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.9 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.89 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.89 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.89 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.89 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.89 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.88 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.88 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.88 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.88 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.88 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.88 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.88 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.88 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.88 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.88 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.88 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.87 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.87 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.87 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.87 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.86 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.86 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.85 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.84 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.84 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.84 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.83 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.83 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.83 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.82 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.82 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.82 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.82 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.81 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.81 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.81 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.81 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.81 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.8 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.8 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.8 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.8 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.8 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.8 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.8 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.79 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.79 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.79 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.78 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.78 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.78 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.78 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.78 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.78 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.77 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.77 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.77 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.76 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.76 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.76 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.75 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.75 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.75 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.75 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.74 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.74 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.73 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.73 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.72 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.72 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.71 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.71 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.71 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.71 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.71 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.7 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.7 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.7 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.69 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.69 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.69 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.68 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.68 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.67 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.67 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.67 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.67 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.67 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.67 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.66 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.65 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.64 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.63 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.61 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.61 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.6 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.59 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.59 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.58 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.58 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.58 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.58 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.58 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.57 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.57 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.56 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.55 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.55 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.54 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.53 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.53 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.53 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.52 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.51 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.51 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.51 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.5 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.5 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.5 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.48 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.47 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.46 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.46 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.45 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.45 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.43 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.42 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.4 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.39 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.38 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.38 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 99.35 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.35 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.33 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 99.32 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.31 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.31 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.31 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.31 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.31 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.3 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.29 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.29 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.29 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 99.27 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.27 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.26 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 99.25 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.25 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.25 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.24 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.24 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.24 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.23 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.2 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.2 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.19 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 99.17 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.17 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.17 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.13 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.13 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.11 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.11 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.09 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.06 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.06 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.06 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.05 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.03 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.98 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.98 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.97 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.96 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.96 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.93 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.92 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.9 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.88 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.87 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.86 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.86 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.86 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.85 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.84 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.82 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.81 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.8 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.79 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.72 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.71 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.68 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.68 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.65 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.64 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.62 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.61 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.58 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.57 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.57 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.56 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.53 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.51 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.5 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.5 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.43 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.43 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.42 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.42 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.41 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.39 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.38 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.36 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.34 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.33 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.33 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.33 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 98.31 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.29 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.29 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 98.27 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.22 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.19 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.17 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.13 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.11 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.09 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.08 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.07 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.07 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.06 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.04 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.02 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.99 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.99 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.98 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.97 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.96 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.94 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.93 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.89 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.85 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.83 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.82 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.82 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 97.81 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 97.8 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 97.79 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.77 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.75 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 97.72 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 97.7 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.7 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.69 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 97.68 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.64 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.63 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.57 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.55 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.55 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.48 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.46 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.46 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.37 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.31 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.28 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 97.27 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 97.25 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 97.21 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.2 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.17 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.06 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 96.97 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 96.83 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 96.81 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.81 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 96.72 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.63 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.46 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 96.37 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 96.27 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.21 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 96.17 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 96.16 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 96.04 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 96.02 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 96.0 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 95.93 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 95.92 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 95.82 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.82 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 95.78 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 95.75 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 95.73 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 95.65 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 95.57 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 95.44 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 95.39 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 95.33 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 95.21 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 95.1 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 95.03 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 94.93 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.83 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 94.74 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 94.73 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 94.5 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 94.44 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 94.36 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 94.3 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 94.14 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 94.13 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 94.08 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 94.06 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 93.89 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 93.88 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 93.59 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 93.46 | |
| PRK10115 | 686 | protease 2; Provisional | 93.43 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 93.34 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 93.16 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.03 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 92.96 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 92.69 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 92.1 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 92.03 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 92.03 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 91.81 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 91.71 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 91.5 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 91.01 | |
| smart00564 | 33 | PQQ beta-propeller repeat. Beta-propeller repeat o | 90.9 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 90.74 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 90.63 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 90.33 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 90.29 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 90.06 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 89.75 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 89.65 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 89.59 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 89.55 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 89.42 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 89.34 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 89.3 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 89.22 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 89.03 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 88.87 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 88.83 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 88.8 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 88.26 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 88.25 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 87.38 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 87.32 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 86.92 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 86.03 | |
| PF14779 | 257 | BBS1: Ciliary BBSome complex subunit 1 | 85.42 | |
| PF01011 | 38 | PQQ: PQQ enzyme repeat family.; InterPro: IPR00237 | 85.29 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 85.19 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 84.87 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 84.55 | |
| PF01436 | 28 | NHL: NHL repeat; InterPro: IPR001258 The NHL repea | 84.48 | |
| PF13570 | 40 | PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A. | 84.43 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 84.18 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 83.96 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 83.23 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 82.81 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 82.66 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 82.43 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 82.11 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 80.76 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 80.49 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 80.21 |
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=177.51 Aligned_cols=141 Identities=24% Similarity=0.309 Sum_probs=124.6
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE-eecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI-HHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~-~~~~~~~~~ 79 (154)
++||+.||++++|++.+... ...+.+|...|..++|+|+|++|.+++.|.+-++||+++....... +|..
T Consensus 234 lat~s~Dgtvklw~~~~e~~----l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~----- 304 (459)
T KOG0272|consen 234 LATASADGTVKLWKLSQETP----LQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSK----- 304 (459)
T ss_pred eeeeccCCceeeeccCCCcc----hhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhccccc-----
Confidence 58999999999999988664 6666799999999999999999999999999999999998765432 2332
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.++.++|.+||.++++|+.|..-||||++++.++..+.+|...+ ..+.|+| +|..|++|+.|++++|||+.
T Consensus 305 -~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I--~~V~fsP-NGy~lATgs~Dnt~kVWDLR 375 (459)
T KOG0272|consen 305 -GVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEI--LSVAFSP-NGYHLATGSSDNTCKVWDLR 375 (459)
T ss_pred -ccceeEecCCCceeeccCccchhheeecccCcEEEEecccccce--eeEeECC-CceEEeecCCCCcEEEeeec
Confidence 45678999999999999999999999999999999999876555 5899999 89999999999999999983
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-30 Score=155.33 Aligned_cols=142 Identities=20% Similarity=0.321 Sum_probs=121.1
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEe
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWIS 81 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (154)
++++.|+++++||+.+++. ..++.+|...|.+++|+|+.+++++|+.|.++++|+............. +..++.
T Consensus 79 lS~swD~~lrlWDl~~g~~----t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~--~~~WVs 152 (315)
T KOG0279|consen 79 LSASWDGTLRLWDLATGES----TRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDS--HREWVS 152 (315)
T ss_pred EeccccceEEEEEecCCcE----EEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCC--CcCcEE
Confidence 6899999999999999865 6677799999999999999999999999999999998766544433322 134555
Q ss_pred EEEEEEcCC--CcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 82 SFRAIWGWD--DSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 82 ~~~~~~~~~--~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
+++|+|+ ..++++++.|++|++||+++.+....+.+|.... ..+.++| ++.+.++|+.||.+.+||+.
T Consensus 153 --cvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v--~t~~vSp-DGslcasGgkdg~~~LwdL~ 222 (315)
T KOG0279|consen 153 --CVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYV--NTVTVSP-DGSLCASGGKDGEAMLWDLN 222 (315)
T ss_pred --EEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccE--EEEEECC-CCCEEecCCCCceEEEEEcc
Confidence 5689997 6899999999999999999999998888766554 5789999 99999999999999999984
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=164.89 Aligned_cols=141 Identities=21% Similarity=0.261 Sum_probs=126.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe-ecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~ 79 (154)
|+|++.|.+-++||++++.. .....||...|.+++|.|+|.++++|+.|..-+|||++++.+...+. |..
T Consensus 276 L~TasfD~tWRlWD~~tk~E----lL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k----- 346 (459)
T KOG0272|consen 276 LGTASFDSTWRLWDLETKSE----LLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIK----- 346 (459)
T ss_pred eeecccccchhhcccccchh----hHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEeccccc-----
Confidence 57999999999999999875 66666999999999999999999999999999999999999887664 433
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.++.+.|+|+|..++||+.|++++|||++..+.+.++.+|..-+ ..+.+.|..+.+|+++++|+++++|.-
T Consensus 347 -~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlV--S~Vk~~p~~g~fL~TasyD~t~kiWs~ 417 (459)
T KOG0272|consen 347 -EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLV--SQVKYSPQEGYFLVTASYDNTVKIWST 417 (459)
T ss_pred -ceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchh--hheEecccCCeEEEEcccCcceeeecC
Confidence 46788999999999999999999999999999999999876555 578999878899999999999999964
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-30 Score=171.79 Aligned_cols=141 Identities=20% Similarity=0.285 Sum_probs=123.8
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE-eecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI-HHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~-~~~~~~~~~ 79 (154)
|++||+|++||+|.+.+... .....+|..||.+++|+|.|-+|++++.|++.++|.........++ +|....
T Consensus 466 LlScSED~svRLWsl~t~s~----~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV--- 538 (707)
T KOG0263|consen 466 LLSCSEDSSVRLWSLDTWSC----LVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDV--- 538 (707)
T ss_pred eeeccCCcceeeeeccccee----EEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhccccccc---
Confidence 68999999999999998874 4455599999999999999999999999999999999887666554 344432
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
. ++.|+|+..|+++|+.|.++|+||+.+|..++.+.+|...+ .+++++| ++.+|++|+.||.|++||+.
T Consensus 539 -~--cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V--~al~~Sp-~Gr~LaSg~ed~~I~iWDl~ 607 (707)
T KOG0263|consen 539 -D--CVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPV--TALAFSP-CGRYLASGDEDGLIKIWDLA 607 (707)
T ss_pred -c--eEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCce--EEEEEcC-CCceEeecccCCcEEEEEcC
Confidence 2 46899999999999999999999999999999999987766 5789999 99999999999999999973
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-30 Score=172.04 Aligned_cols=140 Identities=19% Similarity=0.231 Sum_probs=122.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe-ecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~ 79 (154)
+||||.|++.++|......+ ...+.+|-+.|.|++|+|+++++++||.|.+|++||+.++....++. |..
T Consensus 508 Fatas~D~tArLWs~d~~~P----lRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~----- 578 (707)
T KOG0263|consen 508 FATASHDQTARLWSTDHNKP----LRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKG----- 578 (707)
T ss_pred EEecCCCceeeeeecccCCc----hhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCC-----
Confidence 58999999999999988663 34444999999999999999999999999999999999998877663 322
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.+..++|+|+|++|++|+.|+.|.+||+.+++.+..+.+|. . ...++.|+. ++..|++|+.|++|++||+
T Consensus 579 -~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht-~-ti~SlsFS~-dg~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 579 -PVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHT-G-TIYSLSFSR-DGNVLASGGADNSVRLWDL 648 (707)
T ss_pred -ceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhccc-C-ceeEEEEec-CCCEEEecCCCCeEEEEEc
Confidence 34567899999999999999999999999999999999883 3 337889998 8899999999999999997
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=159.26 Aligned_cols=141 Identities=21% Similarity=0.292 Sum_probs=117.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|++|+.|.++|+||+.+..+ .....+|...|.|++|+|||..|++|+.||+|++||..++++..... ..+..++
T Consensus 130 l~tGsGD~TvR~WD~~TeTp----~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l--~gH~K~I 203 (480)
T KOG0271|consen 130 LVTGSGDTTVRLWDLDTETP----LFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRAL--RGHKKWI 203 (480)
T ss_pred EEecCCCceEEeeccCCCCc----ceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccc--cCcccce
Confidence 68999999999999998774 44555999999999999999999999999999999999887653211 1222334
Q ss_pred eEEEEEEcC-----CCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGW-----DDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~-----~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
. .++|.| ..++|++++.||.++|||+..+.++..+.+|...+. ++.|-. ..++.+|+.|++|++|+.
T Consensus 204 t--~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VT--CvrwGG--~gliySgS~DrtIkvw~a 275 (480)
T KOG0271|consen 204 T--ALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVT--CVRWGG--EGLIYSGSQDRTIKVWRA 275 (480)
T ss_pred e--EEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceE--EEEEcC--CceEEecCCCceEEEEEc
Confidence 4 456654 577999999999999999999999999999887774 678875 479999999999999985
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-28 Score=144.46 Aligned_cols=146 Identities=19% Similarity=0.234 Sum_probs=114.9
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE----------
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI---------- 70 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~---------- 70 (154)
++||++||+++|||++... ..+.+.|.++|+++..+|+...|+++..+|.|++||+.........
T Consensus 98 MyTgseDgt~kIWdlR~~~-----~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~s 172 (311)
T KOG0315|consen 98 MYTGSEDGTVKIWDLRSLS-----CQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQS 172 (311)
T ss_pred EEecCCCceEEEEeccCcc-----cchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceee
Confidence 4789999999999999854 6667789999999999999999999999999999999854211000
Q ss_pred -e------------------------ec---------CCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCc-ccee
Q 038702 71 -H------------------------HN---------NQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQR-RSVA 115 (154)
Q Consensus 71 -~------------------------~~---------~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~-~~~~ 115 (154)
. +. .-..+.-..+++.++|++++|++++.|.+++||+..+. +...
T Consensus 173 l~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~ 252 (311)
T KOG0315|consen 173 LTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLEL 252 (311)
T ss_pred EEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEE
Confidence 0 00 00001123456789999999999999999999999987 5566
Q ss_pred EEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 116 TLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.+.+|.... +..+|+. +++||++|+.|+.+++||+.
T Consensus 253 ~l~gh~rWv--Wdc~FS~-dg~YlvTassd~~~rlW~~~ 288 (311)
T KOG0315|consen 253 VLTGHQRWV--WDCAFSA-DGEYLVTASSDHTARLWDLS 288 (311)
T ss_pred EeecCCceE--Eeeeecc-CccEEEecCCCCceeecccc
Confidence 677766554 6778888 89999999999999999973
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-27 Score=158.95 Aligned_cols=144 Identities=22% Similarity=0.265 Sum_probs=118.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe-ecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~ 79 (154)
+++|+.|+++++||+..... ....+.+|...|++++|+|+++++++|+.|++|++||+++++....+. |..
T Consensus 218 l~s~s~D~tiriwd~~~~~~---~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~----- 289 (456)
T KOG0266|consen 218 LLSGSDDKTLRIWDLKDDGR---NLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD----- 289 (456)
T ss_pred EEEecCCceEEEeeccCCCe---EEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCC-----
Confidence 57899999999999944432 033444999999999999999999999999999999999976665543 332
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCcc--ceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRR--SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.+..++|++++++|++++.|+.|++||+.++. +...+.++........++|+| ++.+++++..|+.+++||++
T Consensus 290 -~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp-~~~~ll~~~~d~~~~~w~l~ 364 (456)
T KOG0266|consen 290 -GISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSP-NGKYLLSASLDRTLKLWDLR 364 (456)
T ss_pred -ceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECC-CCcEEEEecCCCeEEEEEcc
Confidence 23356899999999999999999999999998 566776655441336789999 88999999999999999974
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-28 Score=153.11 Aligned_cols=140 Identities=20% Similarity=0.350 Sum_probs=124.3
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe-ecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~ 79 (154)
|++|++|.++.+|+....+. ...+..+|...|..+.|||+++++++++.|.+|++|+.++++....+. |..
T Consensus 339 lVSgsDd~tlflW~p~~~kk---pi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~----- 410 (480)
T KOG0271|consen 339 LVSGSDDFTLFLWNPFKSKK---PITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVA----- 410 (480)
T ss_pred eEEecCCceEEEeccccccc---chhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccc-----
Confidence 58999999999999876553 134556999999999999999999999999999999999998876664 544
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
.++.++|+.|.++|++|+.|.++++|++++.+....+.+|...+. ++.|+| +++.+++|+.|..+++|.
T Consensus 411 -~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf--~vDwsp-DG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 411 -AVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVF--AVDWSP-DGQRVASGGKDKVLRLWR 479 (480)
T ss_pred -eeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEE--EEEecC-CCceeecCCCceEEEeec
Confidence 567899999999999999999999999999999999998887774 789999 899999999999999995
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-28 Score=153.15 Aligned_cols=141 Identities=21% Similarity=0.338 Sum_probs=125.5
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe-ecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~ 79 (154)
+++||+||+|+|||....+. ...+.+|.-.|.+++|+|.-.++++++.|..|++||.+++++...+. |.+
T Consensus 195 F~t~SdDg~ikiWdf~~~ke----e~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKn----- 265 (464)
T KOG0284|consen 195 FLTCSDDGTIKIWDFRMPKE----ERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKN----- 265 (464)
T ss_pred eEEecCCCeEEEEeccCCch----hheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccc-----
Confidence 58999999999999987664 45557999999999999999999999999999999999998876543 333
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.++.+.|++++++|++++.|..++++|+++.+.++++++|...+ .++.|+|-...+|.+|+.||.|..|.+
T Consensus 266 -tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv--~~~~WhP~~~~lftsgg~Dgsvvh~~v 336 (464)
T KOG0284|consen 266 -TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDV--TSLTWHPLNESLFTSGGSDGSVVHWVV 336 (464)
T ss_pred -eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhh--eeeccccccccceeeccCCCceEEEec
Confidence 56788999999999999999999999999999999999887776 478999999999999999999999976
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-26 Score=153.79 Aligned_cols=147 Identities=17% Similarity=0.274 Sum_probs=112.4
Q ss_pred CeeecCCCcEEEEEccCCCCC--CCC-CceeecccCCeEEEEEcCCC-CEEEEeeCCCeEEEEeccccccceeEeecCCC
Q 038702 1 MATSSTDGTACIWDLRSMATD--KPE-PTKVLSHKRAVHSAYFSPSG-SSLATTSFDDTIGIWSGVNFENTAMIHHNNQT 76 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~--~~~-~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~ 76 (154)
|++|+.|++|++||+...... ... ...+.+|...|.+++|+|++ +.|++++.|++|++||+++.+....+. .+
T Consensus 91 LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~---~h 167 (493)
T PTZ00421 91 LFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK---CH 167 (493)
T ss_pred EEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc---CC
Confidence 589999999999999764321 011 23445899999999999975 699999999999999999876554432 11
Q ss_pred CceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEc----CCCeEEEee
Q 038702 77 GRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT----GGGQVYVWT 152 (154)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~d~~i~~wd 152 (154)
.. .+..++|+|++.+|++++.|+.|++||+++++.+..+.+|..... ..+.|.+ +...+++++ .|+.|++||
T Consensus 168 ~~--~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~-~~~~w~~-~~~~ivt~G~s~s~Dr~VklWD 243 (493)
T PTZ00421 168 SD--QITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKS-QRCLWAK-RKDLIITLGCSKSQQRQIMLWD 243 (493)
T ss_pred CC--ceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcc-eEEEEcC-CCCeEEEEecCCCCCCeEEEEe
Confidence 12 244678999999999999999999999999998888887654433 4567888 445555443 589999999
Q ss_pred CC
Q 038702 153 SD 154 (154)
Q Consensus 153 ~~ 154 (154)
+.
T Consensus 244 lr 245 (493)
T PTZ00421 244 TR 245 (493)
T ss_pred CC
Confidence 73
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-27 Score=146.95 Aligned_cols=140 Identities=19% Similarity=0.192 Sum_probs=120.8
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE-eecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI-HHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~-~~~~~~~~~ 79 (154)
|++|+.|++++|||+.+++. ...+.+|...|..+++|+.--++++++.|+.|+.||++..+....+ +|..
T Consensus 166 f~tgs~DrtikIwDlatg~L----kltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS----- 236 (460)
T KOG0285|consen 166 FATGSADRTIKIWDLATGQL----KLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLS----- 236 (460)
T ss_pred EEecCCCceeEEEEcccCeE----EEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccc-----
Confidence 58999999999999999875 5556699999999999999999999999999999999988776543 2332
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.++++..+|.-..|++|+.|.++|+||+++...+..+.+|...+ .++.+.|.+ ..+++|+.|++|++||+
T Consensus 237 -~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V--~~V~~~~~d-pqvit~S~D~tvrlWDl 306 (460)
T KOG0285|consen 237 -GVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPV--ASVMCQPTD-PQVITGSHDSTVRLWDL 306 (460)
T ss_pred -eeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcc--eeEEeecCC-CceEEecCCceEEEeee
Confidence 45567889999999999999999999999999999999988776 467777744 56899999999999997
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=140.74 Aligned_cols=142 Identities=20% Similarity=0.253 Sum_probs=125.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
+++|+.|+..++||++.+.. ...+.+|.+.|.+++|.|+|.-|++|+.|+++++||++..+....+.+.....
T Consensus 202 FvSg~cD~~aklWD~R~~~c----~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~--- 274 (343)
T KOG0286|consen 202 FVSGGCDKSAKLWDVRSGQC----VQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIIC--- 274 (343)
T ss_pred EEecccccceeeeeccCcce----eEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccC---
Confidence 57999999999999999874 55556999999999999999999999999999999999998888877554322
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
.+.+++|+..|++|++|..|.++.+||.-.++.+..+.+|.+.+ .++..+| ++.-+++|+.|..+++|.
T Consensus 275 gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRv--Scl~~s~-DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 275 GITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRV--SCLGVSP-DGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCee--EEEEECC-CCcEEEecchhHheeecC
Confidence 23467899999999999999999999999999999999887666 4678888 889999999999999994
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=151.46 Aligned_cols=147 Identities=12% Similarity=0.192 Sum_probs=111.3
Q ss_pred CeeecCCCcEEEEEccCCCCCC---CC-CceeecccCCeEEEEEcCCCCE-EEEeeCCCeEEEEeccccccceeEeecCC
Q 038702 1 MATSSTDGTACIWDLRSMATDK---PE-PTKVLSHKRAVHSAYFSPSGSS-LATTSFDDTIGIWSGVNFENTAMIHHNNQ 75 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~---~~-~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~v~~~~~~~~~~~~~~~~~~~ 75 (154)
|++|+.|++|++||+....... .. ...+.+|...|.+++|+|++.. +++++.|++|++||+++.+....+.+..
T Consensus 90 LASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~- 168 (568)
T PTZ00420 90 LASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPK- 168 (568)
T ss_pred EEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCC-
Confidence 5899999999999997643210 00 1234589999999999998875 5789999999999999877554443321
Q ss_pred CCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceE---EEecCCCccEEEEEcCC----CeE
Q 038702 76 TGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCR---FHAHPHQVGTLAGATGG----GQV 148 (154)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~d----~~i 148 (154)
.+.+++|+|+|.+|++++.|+.|++||+++++.+.++.+|........ ..+++ ++.+|++++.| +.|
T Consensus 169 -----~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~-d~~~IlTtG~d~~~~R~V 242 (568)
T PTZ00420 169 -----KLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGG-DDNYILSTGFSKNNMREM 242 (568)
T ss_pred -----cEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcC-CCCEEEEEEcCCCCccEE
Confidence 245778999999999999999999999999999998988765432111 22446 66788887766 479
Q ss_pred EEeeCC
Q 038702 149 YVWTSD 154 (154)
Q Consensus 149 ~~wd~~ 154 (154)
++||++
T Consensus 243 kLWDlr 248 (568)
T PTZ00420 243 KLWDLK 248 (568)
T ss_pred EEEECC
Confidence 999974
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-26 Score=152.74 Aligned_cols=143 Identities=24% Similarity=0.350 Sum_probs=118.4
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEecccc-ccceeE-eecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNF-ENTAMI-HHNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~-~~~~~~-~~~~~~~~ 78 (154)
+++++.|+.+++|+...... .......+|...|.+++|+|+++++++++.|+++++||++.. .....+ .|..
T Consensus 174 l~~~~~~~~i~~~~~~~~~~--~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~---- 247 (456)
T KOG0266|consen 174 LAAASSDGLIRIWKLEGIKS--NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHST---- 247 (456)
T ss_pred EEEccCCCcEEEeecccccc--hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCC----
Confidence 46788999999999965541 013333689999999999999999999999999999999443 333333 3333
Q ss_pred eEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 79 WISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.+++++|+|+++++++|+.|++|+|||+++++++..+.+|...+ ..++|++ ++++|++++.|+.|++||+.
T Consensus 248 --~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~i--s~~~f~~-d~~~l~s~s~d~~i~vwd~~ 318 (456)
T KOG0266|consen 248 --YVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGI--SGLAFSP-DGNLLVSASYDGTIRVWDLE 318 (456)
T ss_pred --ceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCce--EEEEECC-CCCEEEEcCCCccEEEEECC
Confidence 34678999999999999999999999999999999999887765 4678888 88999999999999999973
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=136.99 Aligned_cols=142 Identities=16% Similarity=0.185 Sum_probs=121.8
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEe-ecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~ 78 (154)
|+|+|.|.+.-+||+++++. ...+.+|.+.|.+++++| +++.|++|+.|+..++||++.+.....+. |..
T Consensus 159 ilT~SGD~TCalWDie~g~~----~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghes---- 230 (343)
T KOG0286|consen 159 ILTGSGDMTCALWDIETGQQ----TQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHES---- 230 (343)
T ss_pred eEecCCCceEEEEEcccceE----EEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccccc----
Confidence 58999999999999999885 556669999999999999 99999999999999999999987765553 322
Q ss_pred eEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 79 WISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
-+. .++|.|+|.-+++|+.|++.|+||++..+.+..+.......-..+++|+. .+++|..|..|.++.+||.
T Consensus 231 DIN--sv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~-SGRlLfagy~d~~c~vWDt 302 (343)
T KOG0286|consen 231 DIN--SVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSK-SGRLLFAGYDDFTCNVWDT 302 (343)
T ss_pred ccc--eEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcc-cccEEEeeecCCceeEeec
Confidence 223 56899999999999999999999999999988887554444457889998 7899999999999999994
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-25 Score=134.74 Aligned_cols=147 Identities=18% Similarity=0.263 Sum_probs=116.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCC-CceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE-eecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPE-PTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI-HHNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~-~~~~~~~~ 78 (154)
+++++.|.++.+|++.....+.-. ...+.+|.-.|..+..+++|++.++++.|+++++||+.+++....+ .|..
T Consensus 31 l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~---- 106 (315)
T KOG0279|consen 31 LVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTK---- 106 (315)
T ss_pred EEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCC----
Confidence 467899999999999765332211 3344599999999999999999999999999999999998655443 3443
Q ss_pred eEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCC-ccEEEEEcCCCeEEEeeCC
Q 038702 79 WISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQ-VGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~~wd~~ 154 (154)
-+++++++++.+.+++|+.|++|++|+.... +..++..........+++|+|.. ..+|++++.|++|++||++
T Consensus 107 --dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~ 180 (315)
T KOG0279|consen 107 --DVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLR 180 (315)
T ss_pred --ceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccC
Confidence 3568899999999999999999999998754 34444434324444789999953 5689999999999999984
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-27 Score=147.74 Aligned_cols=140 Identities=20% Similarity=0.232 Sum_probs=118.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE-eecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI-HHNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~-~~~~~~~~ 78 (154)
+++|+.+|.|++|+...+. ...+. .|...|++++|+|+...|++++.||+|+|||....+....+ +|.-
T Consensus 153 miSgD~gG~iKyWqpnmnn-----Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgw---- 223 (464)
T KOG0284|consen 153 MISGDKGGMIKYWQPNMNN-----VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGW---- 223 (464)
T ss_pred EEEcCCCceEEecccchhh-----hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCC----
Confidence 4789999999999987655 33344 45589999999999999999999999999999887665444 2322
Q ss_pred eEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 79 WISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.+. ++.|+|...++++++.|+.|++||.++++++.++.+|...+ ..+.|+| ++++|++++.|..++++|+.
T Consensus 224 dVk--svdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntV--l~~~f~~-n~N~Llt~skD~~~kv~DiR 294 (464)
T KOG0284|consen 224 DVK--SVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTV--LAVKFNP-NGNWLLTGSKDQSCKVFDIR 294 (464)
T ss_pred Ccc--eeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceE--EEEEEcC-CCCeeEEccCCceEEEEehh
Confidence 223 57899999999999999999999999999999998776655 5789999 77999999999999999973
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.8e-26 Score=152.03 Aligned_cols=142 Identities=18% Similarity=0.223 Sum_probs=121.6
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
++||++||.|+|||...+.+ ...+..|++.|+.++|+..++.+++++-||+|+.||+...+.-..+..+. .+
T Consensus 365 iaTG~eDgKVKvWn~~SgfC----~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~----p~ 436 (893)
T KOG0291|consen 365 IATGAEDGKVKVWNTQSGFC----FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPE----PI 436 (893)
T ss_pred EEeccCCCcEEEEeccCceE----EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCC----ce
Confidence 58999999999999998874 55555999999999999999999999999999999998776655544332 23
Q ss_pred eEEEEEEcCCCcEEEEEccCC-eEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTR-TVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+..+++..|.|..+.+|+.|. .|.+|++.+|+.+-.+.+|..++. .++|+| .++.|++++.|.+|++||+
T Consensus 437 QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs--~l~f~~-~~~~LaS~SWDkTVRiW~i 507 (893)
T KOG0291|consen 437 QFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVS--GLSFSP-DGSLLASGSWDKTVRIWDI 507 (893)
T ss_pred eeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcce--eeEEcc-ccCeEEeccccceEEEEEe
Confidence 444667889999999999887 599999999999999999887774 678888 7789999999999999996
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.7e-25 Score=132.21 Aligned_cols=142 Identities=26% Similarity=0.345 Sum_probs=112.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee--cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccc--eeE-eecCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL--SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT--AMI-HHNNQ 75 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~--~~~-~~~~~ 75 (154)
|++|+.|+.|++|+...... ..+.... +|+..|++++|+|.|++|++++.|.++.||.-...+-. ..+ +|.+
T Consensus 30 lAscg~Dk~vriw~~~~~~s--~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEn- 106 (312)
T KOG0645|consen 30 LASCGTDKAVRIWSTSSGDS--WTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHEN- 106 (312)
T ss_pred EEeecCCceEEEEecCCCCc--EEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeecccc-
Confidence 58999999999999985221 1122222 79999999999999999999999999999987654332 222 2333
Q ss_pred CCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCc---cceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 76 TGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQR---RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
.+. +++|+++|.+||+++.|+.|-||.+... +++..+..|.+.+. .+.||| ...+|+++++|.+|++|+
T Consensus 107 ---EVK--~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK--~V~WHP-t~dlL~S~SYDnTIk~~~ 178 (312)
T KOG0645|consen 107 ---EVK--CVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVK--HVIWHP-TEDLLFSCSYDNTIKVYR 178 (312)
T ss_pred ---cee--EEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccccccc--EEEEcC-CcceeEEeccCCeEEEEe
Confidence 233 6789999999999999999999998743 56777887777664 689999 778999999999999996
Q ss_pred C
Q 038702 153 S 153 (154)
Q Consensus 153 ~ 153 (154)
-
T Consensus 179 ~ 179 (312)
T KOG0645|consen 179 D 179 (312)
T ss_pred e
Confidence 3
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=133.73 Aligned_cols=144 Identities=16% Similarity=0.156 Sum_probs=114.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
+++++.||++++||+..... ....+..|+..|.++.|++ +++.+++++.|++|++|+...+.....+.- + .
T Consensus 76 ~~~a~GDGSLrl~d~~~~s~---Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~g---h--~ 147 (311)
T KOG0277|consen 76 VIAASGDGSLRLFDLTMPSK---PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNG---H--N 147 (311)
T ss_pred EEEEecCceEEEeccCCCCc---chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecC---C--c
Confidence 47899999999999654433 1334448999999999999 667888999999999999987766654321 2 2
Q ss_pred EeEEEEEEcCC-CcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 80 ISSFRAIWGWD-DSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 80 ~~~~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
-.++.++|+|. +..+++++.|+.+++||++.......+..|.... .++.|+..+.+++++|+.|+.|+.||+.
T Consensus 148 ~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Ei--l~cdw~ky~~~vl~Tg~vd~~vr~wDir 221 (311)
T KOG0277|consen 148 SCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEI--LCCDWSKYNHNVLATGGVDNLVRGWDIR 221 (311)
T ss_pred cEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEecccee--EeecccccCCcEEEecCCCceEEEEehh
Confidence 25668899995 6799999999999999999655445577776444 4678888888999999999999999973
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.8e-26 Score=151.36 Aligned_cols=139 Identities=24% Similarity=0.357 Sum_probs=123.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe-ecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~ 79 (154)
++|||.|++.++|+++.... ...+.+|+..|.|+.|+|..+.++++|.|++|+||.+.+..+...+. |..
T Consensus 478 iAT~SqDktaKiW~le~~~l----~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~----- 548 (775)
T KOG0319|consen 478 IATGSQDKTAKIWDLEQLRL----LGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTS----- 548 (775)
T ss_pred EEecccccceeeecccCceE----EEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccc-----
Confidence 58999999999999996552 34445999999999999999999999999999999999999887664 433
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
.++++.|-.++..|++++.||.+++|++.+.+++.++..|...+ ++++.+| ...++++|+.||.|.+|.
T Consensus 549 -aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~Drv--WaL~~~~-~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 549 -AVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRV--WALSVSP-LLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred -eeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhcccee--EEEeecC-ccceeEecCCCeEEEEee
Confidence 57788999999999999999999999999999999999887666 5788888 677999999999999994
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-25 Score=141.83 Aligned_cols=141 Identities=23% Similarity=0.312 Sum_probs=117.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE-eecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI-HHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~-~~~~~~~~~ 79 (154)
+++++.|+.|+|+.+....+ ...+.+|.++|.++.|+|.+.+|++++.|+++++|..........+ .|..
T Consensus 332 F~ts~td~~i~V~kv~~~~P----~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hsk----- 402 (524)
T KOG0273|consen 332 FATSSTDGCIHVCKVGEDRP----VKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSK----- 402 (524)
T ss_pred EeecCCCceEEEEEecCCCc----ceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhcc-----
Confidence 57899999999999987664 5556699999999999999999999999999999997665443222 2222
Q ss_pred EeEEEEEEcCC---------CcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEE
Q 038702 80 ISSFRAIWGWD---------DSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYV 150 (154)
Q Consensus 80 ~~~~~~~~~~~---------~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~ 150 (154)
..+.+.|+|+ +..+++++.|++|++||+..+.++.++..|..++ .+++|+| ++.++++|+.||.|.+
T Consensus 403 -ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pV--ysvafS~-~g~ylAsGs~dg~V~i 478 (524)
T KOG0273|consen 403 -EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPV--YSVAFSP-NGRYLASGSLDGCVHI 478 (524)
T ss_pred -ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCce--EEEEecC-CCcEEEecCCCCeeEe
Confidence 2345567774 4479999999999999999999999998777766 4889999 8999999999999999
Q ss_pred eeCC
Q 038702 151 WTSD 154 (154)
Q Consensus 151 wd~~ 154 (154)
|+.+
T Consensus 479 ws~~ 482 (524)
T KOG0273|consen 479 WSTK 482 (524)
T ss_pred cccc
Confidence 9864
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=150.27 Aligned_cols=144 Identities=19% Similarity=0.279 Sum_probs=119.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCcee------ecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE-eec
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKV------LSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI-HHN 73 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~-~~~ 73 (154)
|+++|.|+++++|+++..+.... +..+ ..|...|++++++|+..++++||.|.+.++|+++..+....+ +|.
T Consensus 427 fvsvS~D~tlK~W~l~~s~~~~~-~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~ 505 (775)
T KOG0319|consen 427 FVSVSQDCTLKLWDLPKSKETAF-PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHT 505 (775)
T ss_pred EEEecCCceEEEecCCCcccccc-cceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCc
Confidence 58999999999999987333222 2222 269999999999999999999999999999999955544433 233
Q ss_pred CCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 74 NQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
. ..+++.|+|..+.++|++.|++|+||.+.+..+++++.+|...+. ...|-. ++..|++++.||.|++|++
T Consensus 506 R------Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVl--ra~F~~-~~~qliS~~adGliKlWni 576 (775)
T KOG0319|consen 506 R------GVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVL--RASFIR-NGKQLISAGADGLIKLWNI 576 (775)
T ss_pred c------ceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeE--eeeeee-CCcEEEeccCCCcEEEEec
Confidence 3 356789999999999999999999999999999999999887775 566666 6789999999999999997
Q ss_pred C
Q 038702 154 D 154 (154)
Q Consensus 154 ~ 154 (154)
.
T Consensus 577 k 577 (775)
T KOG0319|consen 577 K 577 (775)
T ss_pred c
Confidence 3
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=134.33 Aligned_cols=142 Identities=22% Similarity=0.292 Sum_probs=115.9
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
++++|.|++|++|+....+. ...+.+|...|...+|+| .++.|++++.|+++++||++.......+....
T Consensus 120 ~ltsSWD~TiKLW~~~r~~S----v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~----- 190 (311)
T KOG0277|consen 120 FLTSSWDGTIKLWDPNRPNS----VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHN----- 190 (311)
T ss_pred EEeeccCCceEeecCCCCcc----eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEecc-----
Confidence 46789999999999877663 445559999999999999 68899999999999999999876554443222
Q ss_pred EeEEEEEEcC-CCcEEEEEccCCeEEEecCCCc-cceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 80 ISSFRAIWGW-DDSCIFIGNMTRTVEVISPAQR-RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 80 ~~~~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
...+++.|+. +...++||+.|+.||.||++.. .++..+.+|.-.+ ..+.++|....+|+++++|-++++||.
T Consensus 191 ~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AV--Rkvk~Sph~~~lLaSasYDmT~riw~~ 264 (311)
T KOG0277|consen 191 SEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAV--RKVKFSPHHASLLASASYDMTVRIWDP 264 (311)
T ss_pred ceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEE--EEEecCcchhhHhhhccccceEEeccc
Confidence 1356778886 5678999999999999999964 5677887665443 578999988899999999999999996
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-25 Score=138.09 Aligned_cols=141 Identities=16% Similarity=0.203 Sum_probs=117.4
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe-ecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~ 79 (154)
+++++.|.+|+.|++.++-. ...+.+|...|..++.+.||..+++++.|.++++|-+.+.+....+. |.. .
T Consensus 208 ilS~srD~tik~We~~tg~c----v~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh----~ 279 (406)
T KOG0295|consen 208 ILSCSRDNTIKAWECDTGYC----VKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEH----P 279 (406)
T ss_pred eeecccccceeEEeccccee----EEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhcccc----c
Confidence 57899999999999999874 44555999999999999999999999999999999999886654432 211 1
Q ss_pred EeEEEEEEcC---------------CCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcC
Q 038702 80 ISSFRAIWGW---------------DDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATG 144 (154)
Q Consensus 80 ~~~~~~~~~~---------------~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 144 (154)
+. +++|.| .++++.+++.|++|++||+.++.++.++.+|.+.+ ..++|+| .|++|+++..
T Consensus 280 vE--ci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwV--r~~af~p-~Gkyi~ScaD 354 (406)
T KOG0295|consen 280 VE--CIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWV--RGVAFSP-GGKYILSCAD 354 (406)
T ss_pred eE--EEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEeccccee--eeeEEcC-CCeEEEEEec
Confidence 22 122222 23699999999999999999999999999998777 4789999 8999999999
Q ss_pred CCeEEEeeCC
Q 038702 145 GGQVYVWTSD 154 (154)
Q Consensus 145 d~~i~~wd~~ 154 (154)
|+++++||++
T Consensus 355 Dktlrvwdl~ 364 (406)
T KOG0295|consen 355 DKTLRVWDLK 364 (406)
T ss_pred CCcEEEEEec
Confidence 9999999974
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-26 Score=147.26 Aligned_cols=141 Identities=13% Similarity=0.274 Sum_probs=119.8
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
|++|+.|+.|+||++..... +.+.+ +|..+|.+++|+++|..|.+++.|+.+++||.+++++...+....
T Consensus 230 lLS~gmD~~vklW~vy~~~~----~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~----- 300 (503)
T KOG0282|consen 230 LLSGGMDGLVKLWNVYDDRR----CLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDK----- 300 (503)
T ss_pred EEecCCCceEEEEEEecCcc----eehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCC-----
Confidence 57899999999999987443 45444 999999999999999999999999999999999998887665433
Q ss_pred EeEEEEEEcCCC-cEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 80 ISSFRAIWGWDD-SCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 80 ~~~~~~~~~~~~-~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
...++.|+|++ +.+++|+.|+.|+.||+++++.++.+..|-... ..+.|-+ .+..+++.+.|+++++|+.+
T Consensus 301 -~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i--~~i~F~~-~g~rFissSDdks~riWe~~ 372 (503)
T KOG0282|consen 301 -VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAI--LDITFVD-EGRRFISSSDDKSVRIWENR 372 (503)
T ss_pred -CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhhe--eeeEEcc-CCceEeeeccCccEEEEEcC
Confidence 23367899998 789999999999999999999988887554444 5788888 78999999999999999853
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.5e-25 Score=139.17 Aligned_cols=149 Identities=16% Similarity=0.276 Sum_probs=114.4
Q ss_pred CeeecCCCcEEEEEccCCCCC--CCCCcee-ecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEeecCCC
Q 038702 1 MATSSTDGTACIWDLRSMATD--KPEPTKV-LSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQT 76 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~--~~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~ 76 (154)
|++|+.|++|.+||+...... ...+... .+|.+.|..++|++ +..+|++++.|+.+.|||.++. ..........+
T Consensus 193 Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah 271 (422)
T KOG0264|consen 193 LLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-TSKPSHSVKAH 271 (422)
T ss_pred EeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-CCCCccccccc
Confidence 578999999999999865442 1222333 39999999999999 6678999999999999999973 11111111122
Q ss_pred CceEeEEEEEEcCC-CcEEEEEccCCeEEEecCCCc-cceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 77 GRWISSFRAIWGWD-DSCIFIGNMTRTVEVISPAQR-RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 77 ~~~~~~~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
... ..+++|+|- +..||+|+.|++|++||+|.. +++.++.+|...+ ..+.|+|.....|++++.|+.+.+||+.
T Consensus 272 ~~~--vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev--~~V~WSPh~etvLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 272 SAE--VNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEV--FQVEWSPHNETVLASSGTDRRLNVWDLS 347 (422)
T ss_pred CCc--eeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcce--EEEEeCCCCCceeEecccCCcEEEEecc
Confidence 222 346789985 568899999999999999975 5677888776665 5899999888999999999999999984
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-25 Score=146.05 Aligned_cols=140 Identities=22% Similarity=0.340 Sum_probs=116.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEe-ecCCCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQTG 77 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~ 77 (154)
++|+|+|-+|++||.+..-. +.+.+ +|.-.|.+++|+| |.+.|++++-|++|++|.+..+.....+. |..
T Consensus 112 vLtsSDDm~iKlW~we~~wa----~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHek--- 184 (794)
T KOG0276|consen 112 VLTSSDDMTIKLWDWENEWA----CEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEK--- 184 (794)
T ss_pred EEecCCccEEEEeeccCcee----eeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeecccc---
Confidence 47899999999999987543 45555 9999999999999 77899999999999999999887765554 322
Q ss_pred ceEeEEEEEEcC--CCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 78 RWISSFRAIWGW--DDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 78 ~~~~~~~~~~~~--~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.+.+ +.+-+ |..+|++|+.|.+++|||..+..+++++.+|...+ ..+.|+| .-.++++|+.||++++|+-
T Consensus 185 -GVN~--Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nv--s~v~fhp-~lpiiisgsEDGTvriWhs 256 (794)
T KOG0276|consen 185 -GVNC--VDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNV--SFVFFHP-ELPIIISGSEDGTVRIWNS 256 (794)
T ss_pred -Ccce--EEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccc--eEEEecC-CCcEEEEecCCccEEEecC
Confidence 2333 33443 55799999999999999999999999999988776 4678999 5579999999999999974
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-24 Score=129.44 Aligned_cols=146 Identities=16% Similarity=0.328 Sum_probs=120.6
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccc--eeEe-------
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT--AMIH------- 71 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~--~~~~------- 71 (154)
+++|+.|..+.+||+.+++. ..++.+|.+.|+.++|+.+...+++|+.|.++++||.++.... .++.
T Consensus 74 f~s~GgDk~v~vwDV~TGkv----~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~ 149 (307)
T KOG0316|consen 74 FASCGGDKAVQVWDVNTGKV----DRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVS 149 (307)
T ss_pred cccCCCCceEEEEEcccCee----eeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCcee
Confidence 57899999999999999986 6777799999999999999999999999999999999864321 1110
Q ss_pred ------e----------------------cCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcC
Q 038702 72 ------H----------------------NNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYIS 123 (154)
Q Consensus 72 ------~----------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~ 123 (154)
| ....++++. ++.|+++++..+.++.|+++|+.|-.+|+.+...++|...
T Consensus 150 Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit--~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~ 227 (307)
T KOG0316|consen 150 SIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPIT--SVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNM 227 (307)
T ss_pred EEEecccEEEeeccCCcEEEEEeecceeehhhcCCcce--eEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccc
Confidence 0 001112222 4689999999999999999999999999999999999887
Q ss_pred CcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 124 AIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 124 ~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
......+++. ....+++|+.||.|++||+
T Consensus 228 eykldc~l~q-sdthV~sgSEDG~Vy~wdL 256 (307)
T KOG0316|consen 228 EYKLDCCLNQ-SDTHVFSGSEDGKVYFWDL 256 (307)
T ss_pred eeeeeeeecc-cceeEEeccCCceEEEEEe
Confidence 7767777777 5578999999999999997
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-24 Score=142.19 Aligned_cols=144 Identities=17% Similarity=0.124 Sum_probs=119.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
+++|++|..|+||+..+.+. ...+..|.+.|++++.+|.--++++++.|-+|++||.+..-...... ..+.+
T Consensus 70 iv~GsDD~~IrVfnynt~ek----V~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtf--eGH~H-- 141 (794)
T KOG0276|consen 70 IVTGSDDMQIRVFNYNTGEK----VKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTF--EGHEH-- 141 (794)
T ss_pred EEEecCCceEEEEeccccee----eEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEE--cCcce--
Confidence 47899999999999999885 66666999999999999999999999999999999998753332221 12333
Q ss_pred eEEEEEEcC-CCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecC-CCccEEEEEcCCCeEEEeeCC
Q 038702 81 SSFRAIWGW-DDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHP-HQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 81 ~~~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.+++++|+| |.+.+++++.|++|++|.+.+..+..++.+|..++.+ +.+-+ .+..+|++|+.|.+|++||.|
T Consensus 142 yVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~--Vdyy~~gdkpylIsgaDD~tiKvWDyQ 215 (794)
T KOG0276|consen 142 YVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNC--VDYYTGGDKPYLISGADDLTIKVWDYQ 215 (794)
T ss_pred EEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcce--EEeccCCCcceEEecCCCceEEEeecc
Confidence 456789999 4679999999999999999999999999999888864 44443 245699999999999999975
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=126.78 Aligned_cols=145 Identities=21% Similarity=0.297 Sum_probs=117.8
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|++||.|.++.||.-..++... ...+.+|...|.|++|+++|++|++++.|++|-+|.+............+++.+-+
T Consensus 76 La~aSFD~t~~Iw~k~~~efec--v~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDV 153 (312)
T KOG0645|consen 76 LASASFDATVVIWKKEDGEFEC--VATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDV 153 (312)
T ss_pred EEEeeccceEEEeecCCCceeE--EeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccc
Confidence 5889999999999876544311 23344999999999999999999999999999999998655544444444444444
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCC---CccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPA---QRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
. .+.|+|...+|++++.|++|++|+-. ..++.+++.+|+..+ .+++|+| .++.|++++.|+++++|-
T Consensus 154 K--~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TV--W~~~F~~-~G~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 154 K--HVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTV--WSLAFDN-IGSRLVSCSDDGTVSIWR 223 (312)
T ss_pred c--EEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceE--EEEEecC-CCceEEEecCCcceEeee
Confidence 4 46899999999999999999999766 457889998877644 6889999 789999999999999996
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-25 Score=139.04 Aligned_cols=146 Identities=18% Similarity=0.236 Sum_probs=122.5
Q ss_pred CeeecCCCcEEEEEccCCCCCCC----CCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKP----EPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQT 76 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~ 76 (154)
|++|+.||.|.+|+..+++...- ..-.+.-+..+|.|+.|+.+...+++|+.||.|++|.++++.+...+......
T Consensus 228 LvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtk 307 (508)
T KOG0275|consen 228 LVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTK 307 (508)
T ss_pred EeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhcc
Confidence 58999999999999987754221 12234468899999999999999999999999999999999988666432222
Q ss_pred CceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 77 GRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+ +.++.|+.|+..+++++.|.++|+.-+.+|++++.+++|...+ ....|.+ ++..+++++.||+|++|+.
T Consensus 308 G----vt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyv--n~a~ft~-dG~~iisaSsDgtvkvW~~ 377 (508)
T KOG0275|consen 308 G----VTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYV--NEATFTD-DGHHIISASSDGTVKVWHG 377 (508)
T ss_pred C----eeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccc--cceEEcC-CCCeEEEecCCccEEEecC
Confidence 2 3356899999999999999999999999999999999987666 4678888 8899999999999999985
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8e-25 Score=149.72 Aligned_cols=141 Identities=18% Similarity=0.270 Sum_probs=122.6
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEecccccccee-EeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAM-IHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~-~~~~~~~~~~ 79 (154)
++++-..|.|++||.+.+.. ..++..|.++|+.++|+|..-+|++|+.|-.|++|+..+.++... .+|.. .
T Consensus 24 ILtslHsG~IQlWDYRM~tl----i~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlD----Y 95 (1202)
T KOG0292|consen 24 ILTSLHSGVIQLWDYRMGTL----IDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLD----Y 95 (1202)
T ss_pred EEEeecCceeeeehhhhhhH----HhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccc----e
Confidence 35677899999999998875 556669999999999999999999999999999999998877643 34544 3
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
++ .+.|++.-.++++++.|.+||||+..+++++..+.+|...+. +.+|+| ...+++++|-|.+|++||+.
T Consensus 96 VR--t~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVM--cAqFhp-tEDlIVSaSLDQTVRVWDis 165 (1202)
T KOG0292|consen 96 VR--TVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVM--CAQFHP-TEDLIVSASLDQTVRVWDIS 165 (1202)
T ss_pred eE--EeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEE--eeccCC-ccceEEEecccceEEEEeec
Confidence 34 567999999999999999999999999999999999877764 678999 77899999999999999984
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-23 Score=140.92 Aligned_cols=143 Identities=18% Similarity=0.221 Sum_probs=105.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe-ecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~ 79 (154)
|++|+.|++|++||+.++.. ...+.+|...|.+++|+|++++|++++.|++|++||+++++...... |...
T Consensus 141 LaSgs~DgtVrIWDl~tg~~----~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~---- 212 (493)
T PTZ00421 141 LASAGADMVVNVWDVERGKA----VEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA---- 212 (493)
T ss_pred EEEEeCCCEEEEEECCCCeE----EEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC----
Confidence 57899999999999987653 34445899999999999999999999999999999999877554332 2211
Q ss_pred EeEEEEEEcCCCcEEEEEc----cCCeEEEecCCCcc-ceeEEeCCCcCCcceEEEecCCCccEEEEEc-CCCeEEEeeC
Q 038702 80 ISSFRAIWGWDDSCIFIGN----MTRTVEVISPAQRR-SVATLQSPYISAIPCRFHAHPHQVGTLAGAT-GGGQVYVWTS 153 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~----~d~~i~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~wd~ 153 (154)
....+.|.+++..+++++ .|+.|++||++... ++.....+..... ....|++ ++++|++++ .|+.|++||+
T Consensus 213 -~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~-~~~~~d~-d~~~L~lggkgDg~Iriwdl 289 (493)
T PTZ00421 213 -KSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSAL-FIPFFDE-DTNLLYIGSKGEGNIRCFEL 289 (493)
T ss_pred -cceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCce-EEEEEcC-CCCEEEEEEeCCCeEEEEEe
Confidence 112456888877777654 47899999998754 3333332222222 4456777 777887776 5999999997
Q ss_pred C
Q 038702 154 D 154 (154)
Q Consensus 154 ~ 154 (154)
.
T Consensus 290 ~ 290 (493)
T PTZ00421 290 M 290 (493)
T ss_pred e
Confidence 3
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-24 Score=135.21 Aligned_cols=148 Identities=18% Similarity=0.294 Sum_probs=115.3
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
|++|..-+.|++|...++. -......+.+|+..|-.++||| ....|++++.||+|+|||++.+........ ..+..-
T Consensus 227 LlsGDc~~~I~lw~~~~g~-W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sD 304 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGS-WKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSD 304 (440)
T ss_pred cccCccccceEeeeeccCc-eeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCc
Confidence 4677778889999998743 2222445668999999999999 456899999999999999998854433322 223334
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCC---ccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQ---RRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
+.++ .|+....+|++|+.||+++|||+++ ++++..++-|...+ .++.|+|.....|++++.|.+|.+||+.
T Consensus 305 VNVI--SWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pI--tsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 305 VNVI--SWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPI--TSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred eeeE--EccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCe--eEEEeccccCceEEeccCCCcEEEEEee
Confidence 5544 6888888999999999999999985 56778888665444 6899999888899999999999999983
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.5e-23 Score=139.31 Aligned_cols=146 Identities=16% Similarity=0.177 Sum_probs=106.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe-ecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~ 79 (154)
|++++.|++|++||++++.. .....|...|.+++|+|+|++|++++.|+.|++||+++++....+. |..... .
T Consensus 141 LaSgS~DgtIrIWDl~tg~~-----~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~-s 214 (568)
T PTZ00420 141 MCSSGFDSFVNIWDIENEKR-----AFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKN-T 214 (568)
T ss_pred EEEEeCCCeEEEEECCCCcE-----EEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCce-e
Confidence 36889999999999987653 2333567889999999999999999999999999999887654432 322111 1
Q ss_pred EeEEEEEEcCCCcEEEEEccCC----eEEEecCCC-ccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTR----TVEVISPAQ-RRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~----~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.......|++++.++++++.++ .|++||++. .+++..+..+..... ....+.+.++.++++|+.|+.|++|++
T Consensus 215 ~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~-L~p~~D~~tg~l~lsGkGD~tIr~~e~ 292 (568)
T PTZ00420 215 KNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAP-LIPHYDESTGLIYLIGKGDGNCRYYQH 292 (568)
T ss_pred EEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccc-eEEeeeCCCCCEEEEEECCCeEEEEEc
Confidence 1112234678999999988664 799999995 566665543332222 334555657889999999999999997
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-23 Score=148.60 Aligned_cols=139 Identities=17% Similarity=0.238 Sum_probs=110.5
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
|++++.||+|++||+.+++. ...+.+|.+.|++++|+| ++.+|++++.|+.|++||+++......+....
T Consensus 548 las~~~Dg~v~lWd~~~~~~----~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~----- 618 (793)
T PLN00181 548 VASSNFEGVVQVWDVARSQL----VTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKA----- 618 (793)
T ss_pred EEEEeCCCeEEEEECCCCeE----EEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCC-----
Confidence 57899999999999987653 444558999999999997 78999999999999999998876654443221
Q ss_pred EeEEEEEE-cCCCcEEEEEccCCeEEEecCCCcc-ceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 80 ISSFRAIW-GWDDSCIFIGNMTRTVEVISPAQRR-SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 80 ~~~~~~~~-~~~~~~l~~~~~d~~i~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
....+.| ++++.++++|+.|+.|++||++..+ .+..+.+|...+ ..+.|. ++.+|++++.|++|++||+
T Consensus 619 -~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V--~~v~f~--~~~~lvs~s~D~~ikiWd~ 689 (793)
T PLN00181 619 -NICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTV--SYVRFV--DSSTLVSSSTDNTLKLWDL 689 (793)
T ss_pred -CeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCE--EEEEEe--CCCEEEEEECCCEEEEEeC
Confidence 2335567 4579999999999999999998765 466666665444 466775 4678999999999999997
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.3e-25 Score=136.68 Aligned_cols=142 Identities=19% Similarity=0.273 Sum_probs=80.4
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecC------
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNN------ 74 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~------ 74 (154)
+++|..|++|+|||..+... ...+.+|++.|.|+.| +.+.+++|+.|.+|++||.+++++...+.+..
T Consensus 210 iVSGlrDnTikiWD~n~~~c----~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhl 283 (499)
T KOG0281|consen 210 IVSGLRDNTIKIWDKNSLEC----LKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHL 283 (499)
T ss_pred hhcccccCceEEeccccHHH----HHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEE
Confidence 35677777777777777666 6666677777777777 34577777777777777777665442211000
Q ss_pred ----------CCCceEeEEEE--------------------EEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCC
Q 038702 75 ----------QTGRWISSFRA--------------------IWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISA 124 (154)
Q Consensus 75 ----------~~~~~~~~~~~--------------------~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~ 124 (154)
...+.+.+..+ ...-+.+++++++.|.+|++|++.+++.+.++.+|..+.
T Consensus 284 rf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gHkRGI 363 (499)
T KOG0281|consen 284 RFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGI 363 (499)
T ss_pred EEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhcccccc
Confidence 00000111100 112245566677777777777777777666666665554
Q ss_pred cceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 125 IPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 125 ~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.+ +++ .+.++++|+.|.+|++||+
T Consensus 364 AC--lQY---r~rlvVSGSSDntIRlwdi 387 (499)
T KOG0281|consen 364 AC--LQY---RDRLVVSGSSDNTIRLWDI 387 (499)
T ss_pred ee--hhc---cCeEEEecCCCceEEEEec
Confidence 32 222 3456666666666666664
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-24 Score=140.53 Aligned_cols=125 Identities=17% Similarity=0.273 Sum_probs=99.9
Q ss_pred ecccCCeEEEEEcCC-CCEEEEeeCCCeEEEEeccccc-cceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEe
Q 038702 29 LSHKRAVHSAYFSPS-GSSLATTSFDDTIGIWSGVNFE-NTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVI 106 (154)
Q Consensus 29 ~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~ 106 (154)
.+|...++|.+|+|. .+.|++++.||++++||+...+ ...++.+....+..+....|+|+++++.+++|+.||.|.+|
T Consensus 265 KGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W 344 (641)
T KOG0772|consen 265 KGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIW 344 (641)
T ss_pred CCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeee
Confidence 369999999999994 5689999999999999998754 44556665556666777789999999999999999999999
Q ss_pred cCCCc--cceeEEe-CCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 107 SPAQR--RSVATLQ-SPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 107 ~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
+.+.. .+...++ .|..+.-..++.|++ ++++|++-+.|+++++|||.
T Consensus 345 ~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~-dg~~LlSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 345 DKGSRTVRPVMKVKDAHLPGQDITSISFSY-DGNYLLSRGFDDTLKVWDLR 394 (641)
T ss_pred ecCCcccccceEeeeccCCCCceeEEEecc-ccchhhhccCCCceeeeecc
Confidence 98643 2222232 444433447899999 99999999999999999984
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.7e-24 Score=143.24 Aligned_cols=142 Identities=15% Similarity=0.203 Sum_probs=116.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
|++++.|.+||+|++.... ++..+.|.+.|+|++|+| |.++|++|+-|+.|+||++...+.........
T Consensus 383 LLSSSMDKTVRLWh~~~~~-----CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~----- 452 (712)
T KOG0283|consen 383 LLSSSMDKTVRLWHPGRKE-----CLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRD----- 452 (712)
T ss_pred eEeccccccEEeecCCCcc-----eeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhh-----
Confidence 6789999999999998766 889999999999999999 88999999999999999998776655443222
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCC------cCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPY------ISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.+..++|.|+|++.+.|+.+|..++|+.+..+......-+. .....+.+++.|.+...+++.+.|..|+|+|.
T Consensus 453 -lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~ 531 (712)
T KOG0283|consen 453 -LITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDG 531 (712)
T ss_pred -hheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEec
Confidence 23367899999999999999999999998776654443110 11134788999877777888899999999997
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-23 Score=132.62 Aligned_cols=145 Identities=21% Similarity=0.330 Sum_probs=110.5
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
|+++++|+.+.|||++++ ... ......+|.++|.|++|+| ++..||+|+.|++|++||+|+........ ..+.
T Consensus 243 F~sv~dd~~L~iwD~R~~-~~~-~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~--e~H~-- 316 (422)
T KOG0264|consen 243 FGSVGDDGKLMIWDTRSN-TSK-PSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTF--EGHE-- 316 (422)
T ss_pred heeecCCCeEEEEEcCCC-CCC-CcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceec--cCCC--
Confidence 578999999999999973 211 1334458999999999999 66788999999999999999876642221 1111
Q ss_pred EeEEEEEEcCCC-cEEEEEccCCeEEEecCCCc--------------cceeEEeCCCcCCcceEEEecCCCccEEEEEcC
Q 038702 80 ISSFRAIWGWDD-SCIFIGNMTRTVEVISPAQR--------------RSVATLQSPYISAIPCRFHAHPHQVGTLAGATG 144 (154)
Q Consensus 80 ~~~~~~~~~~~~-~~l~~~~~d~~i~i~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 144 (154)
-.++++.|+|.. ..|++++.|+.+.+||+..- +++..-.||...+ ..+.|+|..+..+++.+.
T Consensus 317 dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV--~DfsWnp~ePW~I~Svae 394 (422)
T KOG0264|consen 317 DEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKV--SDFSWNPNEPWTIASVAE 394 (422)
T ss_pred cceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCccccc--ccccCCCCCCeEEEEecC
Confidence 145688999974 58899999999999998631 2233333444443 689999988889999999
Q ss_pred CCeEEEeeC
Q 038702 145 GGQVYVWTS 153 (154)
Q Consensus 145 d~~i~~wd~ 153 (154)
|+.+.||..
T Consensus 395 DN~LqIW~~ 403 (422)
T KOG0264|consen 395 DNILQIWQM 403 (422)
T ss_pred CceEEEeec
Confidence 999999985
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-25 Score=138.97 Aligned_cols=136 Identities=19% Similarity=0.302 Sum_probs=101.7
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCce-eecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe-ecCCCCce
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTK-VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQTGRW 79 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~ 79 (154)
++++.|.++.+||+..... ..... +.+|...|..+.| +.+++++++.|.++++|++.+.+....+. |.. .
T Consensus 291 vtcSkDrsiaVWdm~sps~--it~rrVLvGHrAaVNvVdf--d~kyIVsASgDRTikvW~~st~efvRtl~gHkR----G 362 (499)
T KOG0281|consen 291 VTCSKDRSIAVWDMASPTD--ITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKR----G 362 (499)
T ss_pred EEecCCceeEEEeccCchH--HHHHHHHhhhhhheeeecc--ccceEEEecCCceEEEEeccceeeehhhhcccc----c
Confidence 3455555555555543221 11222 2389999999999 45699999999999999999988776543 332 1
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
+.+ .-..++++++|+.|.+||+||++.|.++..+.+|+.-+.+ +.| +.+.+++|.+||+|++||++
T Consensus 363 IAC----lQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRc--iRF---d~krIVSGaYDGkikvWdl~ 428 (499)
T KOG0281|consen 363 IAC----LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRF---DNKRIVSGAYDGKIKVWDLQ 428 (499)
T ss_pred cee----hhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhh--eee---cCceeeeccccceEEEEecc
Confidence 222 2346899999999999999999999999999999877764 555 45889999999999999984
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-24 Score=132.49 Aligned_cols=148 Identities=16% Similarity=0.210 Sum_probs=123.5
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|++|+.|++|+++|+.+...+ +..+.+....+|.++.|+|.|.+++.|.....+++||+.+.++-.......++...+
T Consensus 187 LiS~srD~tvKlFDfsK~saK--rA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai 264 (430)
T KOG0640|consen 187 LISGSRDNTVKLFDFSKTSAK--RAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI 264 (430)
T ss_pred EEeccCCCeEEEEecccHHHH--HHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence 578999999999999764321 133445677899999999999999999999999999999987765444444444444
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
. ++.+++.+++.++++.||.|++||--+++++.++...|.+...++..|.. ++.++++.+.|..+++|.+
T Consensus 265 ~--~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftk-n~kyiLsSG~DS~vkLWEi 334 (430)
T KOG0640|consen 265 T--QVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTK-NGKYILSSGKDSTVKLWEI 334 (430)
T ss_pred e--EEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEcc-CCeEEeecCCcceeeeeee
Confidence 3 67899999999999999999999999999999998666666668888988 8899999999999999987
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-24 Score=138.30 Aligned_cols=146 Identities=18% Similarity=0.204 Sum_probs=117.9
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE----------
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI---------- 70 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~---------- 70 (154)
+++|+.|+.|+.||++.++. ....-.|-+.|..+.|-++|++|++++.|+++++|+.+.+......
T Consensus 315 fl~G~sd~ki~~wDiRs~kv----vqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~ 390 (503)
T KOG0282|consen 315 FLVGGSDKKIRQWDIRSGKV----VQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPC 390 (503)
T ss_pred EEEecCCCcEEEEeccchHH----HHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcc
Confidence 47899999999999999873 3334489999999999999999999999999999998754322111
Q ss_pred --eec-------------------------------CCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEE
Q 038702 71 --HHN-------------------------------NQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATL 117 (154)
Q Consensus 71 --~~~-------------------------------~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~ 117 (154)
.+. ..+...-..+.+.|+|||.+|++|+.||.+.+||.++-+.+..+
T Consensus 391 ~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~l 470 (503)
T KOG0282|consen 391 LTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKL 470 (503)
T ss_pred eecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcc
Confidence 000 01111223446789999999999999999999999999999999
Q ss_pred eCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 118 QSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
+.|...+ ..+.|+|.....+++++.||.|++||
T Consensus 471 kah~~~c--i~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 471 KAHDQPC--IGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ccCCcce--EEEEecCCCcceeEecccCceeEecC
Confidence 9885444 57899998889999999999999997
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-24 Score=144.35 Aligned_cols=144 Identities=19% Similarity=0.215 Sum_probs=114.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
|||++..|.|.+||+..... ......+..|...+.++.|++ ..++|++|+.||+|++||++.......+....+ .
T Consensus 103 IAT~s~nG~i~vWdlnk~~r-nk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSE---S 178 (839)
T KOG0269|consen 103 IATCSTNGVISVWDLNKSIR-NKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSE---S 178 (839)
T ss_pred heeecCCCcEEEEecCcccc-chhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccch---h
Confidence 68999999999999987211 111334458999999999998 678999999999999999998877655543222 2
Q ss_pred EeEEEEEEcCC-CcEEEEEccCCeEEEecCCCc-cceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 80 ISSFRAIWGWD-DSCIFIGNMTRTVEVISPAQR-RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 80 ~~~~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
++ .+.|+|. +.+++++...|.+++||++.. ++...+..|.+.+ .++.|+| +..+||+|+.|+.|+|||.
T Consensus 179 iR--DV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV--~c~nwhP-nr~~lATGGRDK~vkiWd~ 249 (839)
T KOG0269|consen 179 IR--DVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPV--LCLNWHP-NREWLATGGRDKMVKIWDM 249 (839)
T ss_pred hh--ceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCce--EEEeecC-CCceeeecCCCccEEEEec
Confidence 33 5678884 678899999999999999976 4566666666555 4789999 8899999999999999996
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.9e-23 Score=127.92 Aligned_cols=141 Identities=16% Similarity=0.212 Sum_probs=120.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
++||+.|....+|++.++.. ...+.+|++.|+++.|+.+|.+|++|..+|.|++|+..++.....+.... . .+
T Consensus 79 ~aTGGgDD~AflW~~~~ge~----~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~--~-di 151 (399)
T KOG0296|consen 79 VATGGGDDLAFLWDISTGEF----AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEV--E-DI 151 (399)
T ss_pred EEecCCCceEEEEEccCCcc----eeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeeccc--C-ce
Confidence 47899999999999998874 66777999999999999999999999999999999999887665553111 1 11
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
. -+.|+|.+..|++|+.||.+.+|.+.+....+.+.+|...+. .=.|.| ++..++++..||+|++||+
T Consensus 152 e--Wl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct--~G~f~p-dGKr~~tgy~dgti~~Wn~ 219 (399)
T KOG0296|consen 152 E--WLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCT--CGEFIP-DGKRILTGYDDGTIIVWNP 219 (399)
T ss_pred E--EEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcc--cccccC-CCceEEEEecCceEEEEec
Confidence 1 357999999999999999999999999888888888776664 457888 7999999999999999997
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-24 Score=143.95 Aligned_cols=142 Identities=21% Similarity=0.328 Sum_probs=114.5
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeE--eecCCCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMI--HHNNQTG 77 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~--~~~~~~~ 77 (154)
|++||.||+|++||++.... ...+.+....|+.++|+| .+..|+++...|.+.+||++........ .|..
T Consensus 149 liSGSQDg~vK~~DlR~~~S----~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~G--- 221 (839)
T KOG0269|consen 149 LISGSQDGTVKCWDLRSKKS----KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNG--- 221 (839)
T ss_pred EEecCCCceEEEEeeecccc----cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccC---
Confidence 57999999999999998774 455557888999999999 6789999999999999999987665332 2433
Q ss_pred ceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEc--CCCeEEEeeC
Q 038702 78 RWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT--GGGQVYVWTS 153 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~d~~i~~wd~ 153 (154)
.++++.|+|++.+||||+.|++|+|||..+++......-+....+ ..+.|-|.....|++++ .|-.|+|||+
T Consensus 222 ---pV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv-~rVkWRP~~~~hLAtcsmv~dtsV~VWDv 295 (839)
T KOG0269|consen 222 ---PVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPV-GRVKWRPARSYHLATCSMVVDTSVHVWDV 295 (839)
T ss_pred ---ceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeeccee-eeeeeccCccchhhhhhccccceEEEEee
Confidence 356789999999999999999999999987654433332334444 67999998878888887 5889999997
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.6e-23 Score=122.36 Aligned_cols=139 Identities=19% Similarity=0.270 Sum_probs=113.4
Q ss_pred cCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEE
Q 038702 5 STDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFR 84 (154)
Q Consensus 5 ~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
...-.||+||+++++..+ ...+.+|...|+++.|..+|+.+++|++||+++|||++.......+.+..+ +. .
T Consensus 58 a~~qhvRlyD~~S~np~P--v~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~sp----Vn--~ 129 (311)
T KOG0315|consen 58 AGNQHVRLYDLNSNNPNP--VATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSP----VN--T 129 (311)
T ss_pred ccCCeeEEEEccCCCCCc--eeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCC----cc--e
Confidence 334579999999876532 445569999999999999999999999999999999999777777766543 22 4
Q ss_pred EEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 85 AIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 85 ~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+..+|+...|++|..+|.|++||+....+...+-.... ....++...| ++.+++.+...|..++|++
T Consensus 130 vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~-~~i~sl~v~~-dgsml~a~nnkG~cyvW~l 196 (311)
T KOG0315|consen 130 VVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDD-TSIQSLTVMP-DGSMLAAANNKGNCYVWRL 196 (311)
T ss_pred EEecCCcceEEeecCCCcEEEEEccCCccccccCCCCC-cceeeEEEcC-CCcEEEEecCCccEEEEEc
Confidence 56799999999999999999999998876666653333 3336788888 8899999999999999986
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-23 Score=130.53 Aligned_cols=145 Identities=17% Similarity=0.205 Sum_probs=113.3
Q ss_pred CeeecCCCcEEEEEccCCCC--------------------CCCCC-ceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEE
Q 038702 1 MATSSTDGTACIWDLRSMAT--------------------DKPEP-TKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 59 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~--------------------~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~ 59 (154)
+++|+.|.++++|+...... ....+ ..+.+|..+|.++.|++ ...+++++.|.+|+.|
T Consensus 208 ~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~W 286 (423)
T KOG0313|consen 208 FCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVW 286 (423)
T ss_pred EEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEE
Confidence 47899999999999322110 00012 22348999999999998 6688999999999999
Q ss_pred eccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCcc---ceeEEeCCCcCCcceEEEecCCCc
Q 038702 60 SGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRR---SVATLQSPYISAIPCRFHAHPHQV 136 (154)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 136 (154)
|++++.....+.... ...++..+|...+|++|+.|..+|+||.+++. ..+++.+|...+ .++.|+|.+.
T Consensus 287 Dletg~~~~~~~~~k------sl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwV--ssvkwsp~~~ 358 (423)
T KOG0313|consen 287 DLETGGLKSTLTTNK------SLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWV--SSVKWSPTNE 358 (423)
T ss_pred EeecccceeeeecCc------ceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhh--hheecCCCCc
Confidence 999988776554332 23466789999999999999999999999764 345666776644 5789999888
Q ss_pred cEEEEEcCCCeEEEeeCC
Q 038702 137 GTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 137 ~~l~~~~~d~~i~~wd~~ 154 (154)
.+|++|+.|+++++||+.
T Consensus 359 ~~~~S~S~D~t~klWDvR 376 (423)
T KOG0313|consen 359 FQLVSGSYDNTVKLWDVR 376 (423)
T ss_pred eEEEEEecCCeEEEEEec
Confidence 899999999999999973
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.6e-23 Score=128.33 Aligned_cols=141 Identities=18% Similarity=0.267 Sum_probs=117.3
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCC----------C-----CEEEEeeCCCeEEEEeccccc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPS----------G-----SSLATTSFDDTIGIWSGVNFE 65 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------~-----~~l~~~~~d~~v~~~~~~~~~ 65 (154)
+++|+.|.+|++|-+.+++. ...+..|.-+|-+++|.|. + +.+.+++.|++|++||+.++.
T Consensus 250 ~As~s~dqtl~vW~~~t~~~----k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~ 325 (406)
T KOG0295|consen 250 IASCSNDQTLRVWVVATKQC----KAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM 325 (406)
T ss_pred EEecCCCceEEEEEeccchh----hhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe
Confidence 57899999999999998864 4555689999999999772 2 489999999999999999997
Q ss_pred cceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCC
Q 038702 66 NTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGG 145 (154)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 145 (154)
+...+. .+..+++ .++|+|.|+||+++..|+++++||+++.+++.++..|...+ ..+.|+. +..++++|+-|
T Consensus 326 cL~tL~---ghdnwVr--~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfv--t~lDfh~-~~p~VvTGsVd 397 (406)
T KOG0295|consen 326 CLFTLV---GHDNWVR--GVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFV--TSLDFHK-TAPYVVTGSVD 397 (406)
T ss_pred EEEEEe---cccceee--eeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCccee--EEEecCC-CCceEEecccc
Confidence 765553 2233454 56899999999999999999999999999999999665444 5678887 56799999999
Q ss_pred CeEEEeeC
Q 038702 146 GQVYVWTS 153 (154)
Q Consensus 146 ~~i~~wd~ 153 (154)
.++++|..
T Consensus 398 qt~KvwEc 405 (406)
T KOG0295|consen 398 QTVKVWEC 405 (406)
T ss_pred ceeeeeec
Confidence 99999975
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-22 Score=131.92 Aligned_cols=145 Identities=21% Similarity=0.305 Sum_probs=115.4
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
++||++|++|.+|+-...+. ...+..|...|.|++|+|||++|++++.||++.+||=.+++....+.....+ .-
T Consensus 163 i~T~sdDn~v~ffeGPPFKF----k~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aH--kG 236 (603)
T KOG0318|consen 163 IATGSDDNTVAFFEGPPFKF----KSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAH--KG 236 (603)
T ss_pred EEeccCCCeEEEeeCCCeee----eecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCc--cc
Confidence 58999999999998654432 3334479999999999999999999999999999999999888777643222 33
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeC-----------------------------------------
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQS----------------------------------------- 119 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~----------------------------------------- 119 (154)
.++.+.|+||+..+++++.|.+++|||+.+.+++.++..
T Consensus 237 sIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i 316 (603)
T KOG0318|consen 237 SIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVI 316 (603)
T ss_pred cEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhhee
Confidence 567889999999999999999999999987665544431
Q ss_pred -CCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 120 -PYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 120 -~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.|...+ .++..+| ++.+|.+|++||.|.-||+
T Consensus 317 ~GHnK~I-TaLtv~~-d~~~i~SgsyDG~I~~W~~ 349 (603)
T KOG0318|consen 317 SGHNKSI-TALTVSP-DGKTIYSGSYDGHINSWDS 349 (603)
T ss_pred cccccce-eEEEEcC-CCCEEEeeccCceEEEEec
Confidence 122222 4677788 6789999999999999986
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.3e-23 Score=132.12 Aligned_cols=139 Identities=18% Similarity=0.297 Sum_probs=116.8
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
||+|+.||.+++|+..... ...+-.|+++|.+++|+..|+++++++.|+++.+||..++.....+.....
T Consensus 250 LatG~~~G~~riw~~~G~l-----~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~----- 319 (524)
T KOG0273|consen 250 LATGSEDGEARIWNKDGNL-----ISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSA----- 319 (524)
T ss_pred EEEeecCcEEEEEecCchh-----hhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccC-----
Confidence 6899999999999987653 444558999999999999999999999999999999988877665543221
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
..+.+.|- +...+++++.|+.|+++.+....++.++.+|+..+ ..+.|+| .+.+|++++.|+++++|..
T Consensus 320 ~~lDVdW~-~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V--~alk~n~-tg~LLaS~SdD~TlkiWs~ 388 (524)
T KOG0273|consen 320 PALDVDWQ-SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEV--NALKWNP-TGSLLASCSDDGTLKIWSM 388 (524)
T ss_pred CccceEEe-cCceEeecCCCceEEEEEecCCCcceeeecccCce--EEEEECC-CCceEEEecCCCeeEeeec
Confidence 12455676 45678899999999999999999999999977776 5789999 8899999999999999984
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8e-23 Score=125.02 Aligned_cols=140 Identities=21% Similarity=0.335 Sum_probs=109.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
++++|.|++||+|+++...... ......|.++|.+++|+.+|..+++|+.|+.+++||+.+++...+-.|..+ +
T Consensus 43 ~~A~SWD~tVR~wevq~~g~~~--~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~p----v 116 (347)
T KOG0647|consen 43 LAAGSWDGTVRIWEVQNSGQLV--PKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAP----V 116 (347)
T ss_pred EEecccCCceEEEEEecCCccc--chhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccc----e
Confidence 3589999999999998743211 333448999999999999999999999999999999999977766666553 3
Q ss_pred eEEEEEEcCC--CcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 81 SSFRAIWGWD--DSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 81 ~~~~~~~~~~--~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.+ +.|-+. ...|+||+.|.+|++||.++..++.++..+. .+.+.++ ...+++.+..++.|.+|+|+
T Consensus 117 kt--~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~Dv-----~~pm~vVata~r~i~vynL~ 184 (347)
T KOG0647|consen 117 KT--CHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAADV-----LYPMAVVATAERHIAVYNLE 184 (347)
T ss_pred eE--EEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehhc-----cCceeEEEecCCcEEEEEcC
Confidence 43 345443 4589999999999999999999998887543 2221222 33588889999999999984
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-24 Score=144.32 Aligned_cols=142 Identities=20% Similarity=0.254 Sum_probs=121.9
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|++|+.+|+|++||+...+. ...+.+|...+.++.|+|-+.++++|+.|+-+++||.+...+...+.. +...+
T Consensus 85 laagsasgtiK~wDleeAk~----vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s---~~~vv 157 (825)
T KOG0267|consen 85 LAAGSASGTIKVWDLEEAKI----VRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS---HTRVV 157 (825)
T ss_pred hcccccCCceeeeehhhhhh----hhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecC---Cccee
Confidence 57899999999999997764 556669999999999999999999999999999999998777765543 22223
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
. .+.|+|+|++++.++.|..++|||...|+.+..+++|...+. .+.++| ..-++++|+.|+++++||++
T Consensus 158 ~--~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~--sle~hp-~e~Lla~Gs~d~tv~f~dle 226 (825)
T KOG0267|consen 158 D--VLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQ--SLEFHP-LEVLLAPGSSDRTVRFWDLE 226 (825)
T ss_pred E--EEeecCCCceeeccCCcceeeeeccccccccccccccccccc--ccccCc-hhhhhccCCCCceeeeeccc
Confidence 3 357999999999999999999999999999999998877775 567999 66789999999999999974
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.4e-23 Score=132.26 Aligned_cols=139 Identities=15% Similarity=0.232 Sum_probs=109.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEecccc-ccceeEeecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNF-ENTAMIHHNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~-~~~~~~~~~~~~~~ 78 (154)
|++|++|+.+++||+.+... ...+.+|++.|.|.+|+| ++..+++|++||+|++||.+.. .....+.|..+
T Consensus 126 l~s~sDd~v~k~~d~s~a~v----~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~p--- 198 (487)
T KOG0310|consen 126 LVSGSDDKVVKYWDLSTAYV----QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCP--- 198 (487)
T ss_pred EEecCCCceEEEEEcCCcEE----EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCc---
Confidence 47899999999999987652 445669999999999999 5668999999999999999987 44455555443
Q ss_pred eEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccce-eEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 79 WISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSV-ATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+. .+.+-|.|..+++++ .+.+++||+.+|..+ ..+..|+..+ +++++.. ++..|++|+-|+.+++||.
T Consensus 199 -Ve--~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtV--TcL~l~s-~~~rLlS~sLD~~VKVfd~ 267 (487)
T KOG0310|consen 199 -VE--SVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTV--TCLRLAS-DSTRLLSGSLDRHVKVFDT 267 (487)
T ss_pred -ee--eEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceE--EEEEeec-CCceEeecccccceEEEEc
Confidence 22 456889999998887 557999999966544 4444455555 4667776 6789999999999999995
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.1e-23 Score=136.66 Aligned_cols=147 Identities=16% Similarity=0.231 Sum_probs=119.3
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEE-cCCCCEEEEeeCCCeEEEEecccccc--ceeE---eec
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYF-SPSGSSLATTSFDDTIGIWSGVNFEN--TAMI---HHN 73 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~-~~~~~~l~~~~~d~~v~~~~~~~~~~--~~~~---~~~ 73 (154)
|+++|.|.+|++|+...... .+.... .|.+.|.|+++ .++..++++|+-|+.|.+||+.++.. ...+ ...
T Consensus 88 lIS~SsDtTVK~W~~~~~~~---~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~ 164 (735)
T KOG0308|consen 88 LISASSDTTVKVWNAHKDNT---FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVN 164 (735)
T ss_pred eEEecCCceEEEeecccCcc---hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccc
Confidence 57899999999999987641 144444 89999999999 77889999999999999999997633 1111 111
Q ss_pred -CCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 74 -NQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 74 -~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
...+.....++++.++.+..+++|+..+.+++||.++.+.+..+++|...+. .+..++ ++..+++++.||+|++||
T Consensus 165 sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr--~ll~~d-DGt~~ls~sSDgtIrlWd 241 (735)
T KOG0308|consen 165 SLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVR--VLLVND-DGTRLLSASSDGTIRLWD 241 (735)
T ss_pred cCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceE--EEEEcC-CCCeEeecCCCceEEeee
Confidence 1124445667888899999999999999999999999999999999887775 456676 889999999999999999
Q ss_pred C
Q 038702 153 S 153 (154)
Q Consensus 153 ~ 153 (154)
+
T Consensus 242 L 242 (735)
T KOG0308|consen 242 L 242 (735)
T ss_pred c
Confidence 8
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-23 Score=136.40 Aligned_cols=148 Identities=16% Similarity=0.239 Sum_probs=109.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee------cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL------SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNN 74 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~ 74 (154)
++|++.||++|+||+...+. ..+.+ +..-+++.++|+|++.++++|+.||+|.+|+.........+....
T Consensus 284 FlT~s~DgtlRiWdv~~~k~----q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~ 359 (641)
T KOG0772|consen 284 FLTCSYDGTLRIWDVNNTKS----QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKD 359 (641)
T ss_pred eEEecCCCcEEEEecCCchh----heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeee
Confidence 57999999999999987554 33333 234578899999999999999999999999986654433222222
Q ss_pred CCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCc-cceeEEeCCCcCCcceEEEecCCCccEEEEEcC------CCe
Q 038702 75 QTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQR-RSVATLQSPYISAIPCRFHAHPHQVGTLAGATG------GGQ 147 (154)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------d~~ 147 (154)
.+.....+.++.|+++|++|++-+.|+++++||+++. +++....+.........++|+| +.++|++|+. .|+
T Consensus 360 AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSP-d~kli~TGtS~~~~~~~g~ 438 (641)
T KOG0772|consen 360 AHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSP-DDKLILTGTSAPNGMTAGT 438 (641)
T ss_pred ccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCC-CceEEEecccccCCCCCce
Confidence 2222112346789999999999999999999999975 5666665554444446789999 7789998863 456
Q ss_pred EEEeeC
Q 038702 148 VYVWTS 153 (154)
Q Consensus 148 i~~wd~ 153 (154)
+.+||.
T Consensus 439 L~f~d~ 444 (641)
T KOG0772|consen 439 LFFFDR 444 (641)
T ss_pred EEEEec
Confidence 777763
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-22 Score=121.64 Aligned_cols=138 Identities=15% Similarity=0.231 Sum_probs=114.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
+++.++|++||+||.+++. ..+......+|+++.++++|+++..+ ..+.|+.||..+......+..+..
T Consensus 158 iLSSadd~tVRLWD~rTgt-----~v~sL~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~n----- 226 (334)
T KOG0278|consen 158 ILSSADDKTVRLWDHRTGT-----EVQSLEFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPCN----- 226 (334)
T ss_pred EEeeccCCceEEEEeccCc-----EEEEEecCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCccc-----
Confidence 3567899999999999987 56666778889999999999876554 667899999998887765544332
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEE-eCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATL-QSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+-+...+|+...+++|+.|..++.||..+++.+..+ ++|+..+ .++.|+| +++..++|+.||+|++|..
T Consensus 227 -V~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpV--hcVrFSP-dGE~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 227 -VESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPV--HCVRFSP-DGELYASGSEDGTIRLWQT 296 (334)
T ss_pred -cccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCce--EEEEECC-CCceeeccCCCceEEEEEe
Confidence 224567899999999999999999999999998886 6776666 4789999 8999999999999999964
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-22 Score=127.94 Aligned_cols=143 Identities=18% Similarity=0.169 Sum_probs=122.1
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEe
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWIS 81 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (154)
++++.|..|+||....... +.....|..+|+.+..+|.|.+|++++.|++....|++++.......+. ...+.
T Consensus 277 ~~aSad~~i~vws~~~~s~----~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~---~s~v~ 349 (506)
T KOG0289|consen 277 ITASADEIIRVWSVPLSSE----PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE---TSDVE 349 (506)
T ss_pred eecCCcceEEeeccccccC----ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec---cccce
Confidence 6789999999999987654 5555689999999999999999999999999999999998887665543 11233
Q ss_pred EEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 82 SFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
..+.+|+|||..+.+|..|+.++|||+.++..+..|.+|...+ ..++|+- +|.+|+++..|+.|++||+.
T Consensus 350 ~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~v--k~i~FsE-NGY~Lat~add~~V~lwDLR 419 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPV--KAISFSE-NGYWLATAADDGSVKLWDLR 419 (506)
T ss_pred eEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCce--eEEEecc-CceEEEEEecCCeEEEEEeh
Confidence 4467899999999999999999999999999999999876665 4678887 88999999999999999983
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-23 Score=129.89 Aligned_cols=139 Identities=19% Similarity=0.253 Sum_probs=116.3
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe-ecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~ 79 (154)
|++++.|++|+.||+..++. .....+|-+.|.|++..|.-..|++|+.|.++++||+++......+. |...
T Consensus 208 lFs~gedk~VKCwDLe~nkv----IR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~---- 279 (460)
T KOG0285|consen 208 LFSAGEDKQVKCWDLEYNKV----IRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNP---- 279 (460)
T ss_pred EEEecCCCeeEEEechhhhh----HHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCc----
Confidence 47899999999999998874 55556999999999999999999999999999999999987765553 5443
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+.++.+.|....+++|+.|++|++||++.++...++..|...+ .+++.+| ....|++++.| .|+-|++
T Consensus 280 --V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksv--ral~lhP-~e~~fASas~d-nik~w~~ 347 (460)
T KOG0285|consen 280 --VASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSV--RALCLHP-KENLFASASPD-NIKQWKL 347 (460)
T ss_pred --ceeEEeecCCCceEEecCCceEEEeeeccCceeEeeeccccee--eEEecCC-chhhhhccCCc-cceeccC
Confidence 3356677878889999999999999999999999988665555 5789999 77888988887 5677765
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-23 Score=128.96 Aligned_cols=145 Identities=17% Similarity=0.204 Sum_probs=123.5
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
|++|+.||.|++|.++++.. ..++. .|...|+|+.|+.++..+.+++.|.++++.-+.+++....+.- +...
T Consensus 278 lAsGsqDGkIKvWri~tG~C----lRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrG---HsSy 350 (508)
T KOG0275|consen 278 LASGSQDGKIKVWRIETGQC----LRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRG---HSSY 350 (508)
T ss_pred hhccCcCCcEEEEEEecchH----HHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcC---cccc
Confidence 58999999999999999985 55555 8999999999999999999999999999999999888765531 1212
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
+ -.+.|.++|.++++++.||+|++|+..+.+++.+++..........+..-|.++..++.+....++++-+++
T Consensus 351 v--n~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q 423 (508)
T KOG0275|consen 351 V--NEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ 423 (508)
T ss_pred c--cceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc
Confidence 2 256799999999999999999999999999999998665555556778888888999999999999998764
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-22 Score=127.47 Aligned_cols=141 Identities=16% Similarity=0.277 Sum_probs=114.8
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
+.+++.|.+|+.||+.++.. .....-...+.++..+|..++|++|+.|..+++||.+++...........+..++
T Consensus 274 ~yS~SwDHTIk~WDletg~~-----~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwV 348 (423)
T KOG0313|consen 274 IYSVSWDHTIKVWDLETGGL-----KSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWV 348 (423)
T ss_pred eEeecccceEEEEEeecccc-----eeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhh
Confidence 36899999999999998873 4344456679999999999999999999999999999986655444433444455
Q ss_pred eEEEEEEcCCC-cEEEEEccCCeEEEecCCCcc-ceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 81 SSFRAIWGWDD-SCIFIGNMTRTVEVISPAQRR-SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 81 ~~~~~~~~~~~-~~l~~~~~d~~i~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
. .+.|+|.. ..|++++.|+++++||+|+.+ ++..+.+|...+ .++.|+ ++.++++|+.|++|+++.
T Consensus 349 s--svkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKv--l~vdW~--~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 349 S--SVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKV--LSVDWN--EGGLIVSGGADNKLRIFK 416 (423)
T ss_pred h--heecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceE--EEEecc--CCceEEeccCcceEEEec
Confidence 5 56899975 468899999999999999877 899999886666 477887 467999999999999974
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-21 Score=139.44 Aligned_cols=146 Identities=16% Similarity=0.254 Sum_probs=110.6
Q ss_pred CeeecCCCcEEEEEccCCCC---CCCCCceeecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEeecCCC
Q 038702 1 MATSSTDGTACIWDLRSMAT---DKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQT 76 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~ 76 (154)
|++|+.|+.|++|+...... ....+.....+...+.+++|+| .+++|++++.|++|++||+.+.+....+. .+
T Consensus 498 latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~---~H 574 (793)
T PLN00181 498 FATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMK---EH 574 (793)
T ss_pred EEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEec---CC
Confidence 57999999999999864211 0001122234567899999988 57899999999999999998766544332 12
Q ss_pred CceEeEEEEEEcC-CCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 77 GRWISSFRAIWGW-DDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 77 ~~~~~~~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.. .+.+++|+| ++.+|++|+.|+.|++||++++..+..+..+ . . ...+.|++.++.+|++|+.||.|++||+.
T Consensus 575 ~~--~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~-~-v~~v~~~~~~g~~latgs~dg~I~iwD~~ 648 (793)
T PLN00181 575 EK--RVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-A-N-ICCVQFPSESGRSLAFGSADHKVYYYDLR 648 (793)
T ss_pred CC--CEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-C-C-eEEEEEeCCCCCEEEEEeCCCeEEEEECC
Confidence 22 345778986 7889999999999999999999888888743 2 2 25678876578999999999999999973
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.3e-22 Score=136.38 Aligned_cols=149 Identities=20% Similarity=0.230 Sum_probs=123.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecC---CCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNN---QTG 77 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~---~~~ 77 (154)
+|.||+|-.|++-++.+... ...+.+|.++|.++.|+|++++|++.+.||.|++|++.++.......... ...
T Consensus 111 iaagsdD~~vK~~~~~D~s~----~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~ 186 (933)
T KOG1274|consen 111 IAAGSDDTAVKLLNLDDSSQ----EKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFI 186 (933)
T ss_pred EEeecCceeEEEEeccccch----heeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcccccc
Confidence 47899999999999988764 56667999999999999999999999999999999999877664443111 111
Q ss_pred ceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 78 RWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
..-.+..++|+|++..++..+.|+.|.+|+...++....+.........+.++|+| .|.||++++.||.|-|||.+
T Consensus 187 ~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP-nG~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 187 LSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP-NGKYIAASTLDGQILVWNVD 262 (933)
T ss_pred ccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcC-CCcEEeeeccCCcEEEEecc
Confidence 01123468999998888888999999999999999999888655555457899999 89999999999999999975
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-21 Score=119.40 Aligned_cols=145 Identities=17% Similarity=0.232 Sum_probs=111.5
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEecccccc-ce-eEeecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN-TA-MIHHNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~-~~-~~~~~~~~~~ 78 (154)
+++++.|++|++||++..+. .-.. +...-..++|+|+|-.||++...+.|++||++.... +. .+.... +.
T Consensus 115 FlS~S~D~tvrLWDlR~~~c-----qg~l-~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~--~~ 186 (311)
T KOG1446|consen 115 FLSSSLDKTVRLWDLRVKKC-----QGLL-NLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITD--ND 186 (311)
T ss_pred EEecccCCeEEeeEecCCCC-----ceEE-ecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCC--CC
Confidence 47899999999999996653 3222 222334678999999999999888999999998633 32 222221 11
Q ss_pred eEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCC-cceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 79 WISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISA-IPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
....-.+.|+|+|++++.+...+.+++.|.-+|..+.++..+.... .....+|.| +++++++|+.||+|.+|++.
T Consensus 187 ~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~ 262 (311)
T KOG1446|consen 187 EAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTP-DSKFVLSGSDDGTIHVWNLE 262 (311)
T ss_pred ccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECC-CCcEEEEecCCCcEEEEEcC
Confidence 2223367899999999999999999999999999888888665433 446788999 89999999999999999973
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.2e-23 Score=125.90 Aligned_cols=147 Identities=16% Similarity=0.211 Sum_probs=113.6
Q ss_pred CeeecCCCcEEEEEccCC------------C-C-CCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEecccccc
Q 038702 1 MATSSTDGTACIWDLRSM------------A-T-DKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN 66 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~------------~-~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~ 66 (154)
++||+.|..|+|.|++.. . . ..+....+..|.++|+++.|+|....|++++.|++|+++|......
T Consensus 127 vATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~sa 206 (430)
T KOG0640|consen 127 VATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSA 206 (430)
T ss_pred EEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHH
Confidence 478999999999998721 1 1 1122233448999999999999999999999999999999987655
Q ss_pred ceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeC--CCcCCcceEEEecCCCccEEEEEcC
Q 038702 67 TAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQS--PYISAIPCRFHAHPHQVGTLAGATG 144 (154)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~ 144 (154)
...+.... ....+. ++.|+|.|.+|+.|....++|+||+.+.++...... ++...+ +++.+++ .+++.++++.
T Consensus 207 KrA~K~~q-d~~~vr--siSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai-~~V~Ys~-t~~lYvTaSk 281 (430)
T KOG0640|consen 207 KRAFKVFQ-DTEPVR--SISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI-TQVRYSS-TGSLYVTASK 281 (430)
T ss_pred HHHHHHhh-ccceee--eEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce-eEEEecC-CccEEEEecc
Confidence 43333222 122333 567999999999999999999999999887655442 233343 6789998 8899999999
Q ss_pred CCeEEEee
Q 038702 145 GGQVYVWT 152 (154)
Q Consensus 145 d~~i~~wd 152 (154)
||.|++||
T Consensus 282 DG~IklwD 289 (430)
T KOG0640|consen 282 DGAIKLWD 289 (430)
T ss_pred CCcEEeec
Confidence 99999998
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-22 Score=123.76 Aligned_cols=140 Identities=17% Similarity=0.152 Sum_probs=119.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCC-CEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSG-SSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
+++++.|.+|+.||+++++. ..++.+|.+.|.++.-+.-| .++.+++.|+++++||+++......+....
T Consensus 105 i~S~gtDk~v~~wD~~tG~~----~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~ky----- 175 (338)
T KOG0265|consen 105 ILSCGTDKTVRGWDAETGKR----IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKY----- 175 (338)
T ss_pred EEEecCCceEEEEeccccee----eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccce-----
Confidence 47899999999999999886 66777999999999855544 467788999999999999887766553322
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
....+.|..++..+.+|+-|+.|++||++..+.+..+.+|...+ +.+..+| .+.++.+-+.|.++++||+
T Consensus 176 -qltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtI--t~lsls~-~gs~llsnsMd~tvrvwd~ 245 (338)
T KOG0265|consen 176 -QLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTI--TGLSLSR-YGSFLLSNSMDNTVRVWDV 245 (338)
T ss_pred -eEEEEEecccccceeeccccCceeeeccccCcceEEeecccCce--eeEEecc-CCCccccccccceEEEEEe
Confidence 23467899999999999999999999999999999999987766 4788888 7899999999999999996
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.1e-23 Score=131.10 Aligned_cols=146 Identities=18% Similarity=0.222 Sum_probs=110.5
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee--cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccc--------eeE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL--SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT--------AMI 70 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~--------~~~ 70 (154)
|++|+.|..+.+||+.++. ..... +|...+.+++|.|||..+++|+.|+.+..||+...... .+.
T Consensus 284 LlaCg~~e~~~lwDv~tgd-----~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~ 358 (519)
T KOG0293|consen 284 LLACGFDEVLSLWDVDTGD-----LRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVH 358 (519)
T ss_pred EEecCchHheeeccCCcch-----hhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeE
Confidence 5789999999999999987 34444 45689999999999999999999999999988632100 000
Q ss_pred e---------------e---------------cCCCCceE----------------------------------------
Q 038702 71 H---------------H---------------NNQTGRWI---------------------------------------- 80 (154)
Q Consensus 71 ~---------------~---------------~~~~~~~~---------------------------------------- 80 (154)
. . .......+
T Consensus 359 dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq 438 (519)
T KOG0293|consen 359 DLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQ 438 (519)
T ss_pred EEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccc
Confidence 0 0 00000000
Q ss_pred --eEEEEEEcC-CCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 --SSFRAIWGW-DDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 --~~~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
..++-+|.. +..++++|++|+.|+||+..+++++.++.+|...+ ..++|+|.++.++|+++.||+|++|-+
T Consensus 439 ~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~v--NcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 439 GHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTV--NCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred cceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCccee--eEEecCCCCHHHhhccCCCCeEEEecC
Confidence 111235554 44789999999999999999999999999987555 578999999999999999999999965
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.7e-22 Score=125.90 Aligned_cols=141 Identities=20% Similarity=0.295 Sum_probs=113.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccc-eeEeecCCCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENT-AMIHHNNQTG 77 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~-~~~~~~~~~~ 77 (154)
||+||.|.+|++||+.++++ ...+ .|...|.+++|+| .+..|++|+.|++|.+.|.+..... ........
T Consensus 259 LaSgsaD~TV~lWD~~~g~p-----~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~-- 331 (463)
T KOG0270|consen 259 LASGSADKTVKLWDVDTGKP-----KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGE-- 331 (463)
T ss_pred EEecCCCceEEEEEcCCCCc-----ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccc--
Confidence 68999999999999999884 4444 6899999999999 6789999999999999999964332 22222221
Q ss_pred ceEeEEEEEEcCCC-cEEEEEccCCeEEEecCCCc-cceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 78 RWISSFRAIWGWDD-SCIFIGNMTRTVEVISPAQR-RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 78 ~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
+=.++|.|.. ..++++..||+|+-+|+|.. +++.+++.|...+. .+++++..+.++++++.|+.|++|+++
T Consensus 332 ----VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~IS--gl~~n~~~p~~l~t~s~d~~Vklw~~~ 404 (463)
T KOG0270|consen 332 ----VEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEIS--GLSVNIQTPGLLSTASTDKVVKLWKFD 404 (463)
T ss_pred ----eEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcc--eEEecCCCCcceeeccccceEEEEeec
Confidence 1256788854 57778889999999999965 89999998877664 677777788999999999999999974
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.8e-22 Score=121.97 Aligned_cols=145 Identities=21% Similarity=0.304 Sum_probs=120.0
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccc---eeEeecCCCCc
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT---AMIHHNNQTGR 78 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~---~~~~~~~~~~~ 78 (154)
.+|+-|+.|++||++.+.. ...+.+|.++|+.+..+|+|.++.+-+.|.++++||++..... ........+.-
T Consensus 190 ~sggIdn~ikvWd~r~~d~----~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnf 265 (338)
T KOG0265|consen 190 ISGGIDNDIKVWDLRKNDG----LYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNF 265 (338)
T ss_pred eeccccCceeeeccccCcc----eEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhh
Confidence 5789999999999998775 5556699999999999999999999999999999999864322 22222222333
Q ss_pred eEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 79 WISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
....+.+.|+|++.++.+|+.|+.+++||......+..+.+|...+ ..++|+| ...+|.+++.|.+|++=++
T Consensus 266 eknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsv--n~~~Fhp-~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 266 EKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSV--NEVDFHP-TEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred hhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeE--EEeeecC-CCcEEEEeccCceeEeecc
Confidence 3455688999999999999999999999999999999999887666 5789999 7789999999999987554
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-21 Score=121.65 Aligned_cols=144 Identities=18% Similarity=0.234 Sum_probs=115.5
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEee--------
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHH-------- 72 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~-------- 72 (154)
|++|+.||.+-+|.+.+... ...+.+|..++++-+|.|+|++++++..||+|++||+.++.+......
T Consensus 163 llAG~~DGsvWmw~ip~~~~----~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~ 238 (399)
T KOG0296|consen 163 LLAGSTDGSVWMWQIPSQAL----CKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPC 238 (399)
T ss_pred EEeecCCCcEEEEECCCcce----eeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCc
Confidence 57899999999999988642 444459999999999999999999999999999999986543221110
Q ss_pred --------------------------------cC----------------------------------------------
Q 038702 73 --------------------------------NN---------------------------------------------- 74 (154)
Q Consensus 73 --------------------------------~~---------------------------------------------- 74 (154)
.+
T Consensus 239 ~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~ 318 (399)
T KOG0296|consen 239 ISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS 318 (399)
T ss_pred cccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc
Confidence 00
Q ss_pred ------CCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeE
Q 038702 75 ------QTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQV 148 (154)
Q Consensus 75 ------~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 148 (154)
++. ..+.++.|-+ ..+|++++.+|+|+.||.++|+++.++.+|...+ ..++.+| +.+++++++.|++.
T Consensus 319 ~~R~~c~he--~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~I--l~f~ls~-~~~~vvT~s~D~~a 392 (399)
T KOG0296|consen 319 TLRHICEHE--DGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGI--LDFALSP-QKRLVVTVSDDNTA 392 (399)
T ss_pred hhheeccCC--CceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchhe--eEEEEcC-CCcEEEEecCCCeE
Confidence 000 1122346776 6789999999999999999999999999988776 4789999 88999999999999
Q ss_pred EEeeCC
Q 038702 149 YVWTSD 154 (154)
Q Consensus 149 ~~wd~~ 154 (154)
++|+.+
T Consensus 393 ~VF~v~ 398 (399)
T KOG0296|consen 393 LVFEVP 398 (399)
T ss_pred EEEecC
Confidence 999863
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=119.88 Aligned_cols=148 Identities=18% Similarity=0.279 Sum_probs=113.3
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeec-------
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHN------- 73 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~------- 73 (154)
|++|++||.|.+|+...... ...+.+|.+.|+.++++|.+++-++.+.|+.+++||+-.++......-.
T Consensus 100 LlS~sdDG~i~iw~~~~W~~----~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~ 175 (362)
T KOG0294|consen 100 LLSGSDDGHIIIWRVGSWEL----LKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVS 175 (362)
T ss_pred eeeecCCCcEEEEEcCCeEE----eeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeE
Confidence 57899999999999988763 4445599999999999999999999999999999999876644322100
Q ss_pred -CCCCc-eE-------------------------eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcc
Q 038702 74 -NQTGR-WI-------------------------SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIP 126 (154)
Q Consensus 74 -~~~~~-~~-------------------------~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~ 126 (154)
.+.+. .+ ..+++.|- ++.+|++|..|+.|++||..+..+...+.+|...+-.
T Consensus 176 w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~ 254 (362)
T KOG0294|consen 176 WSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKD 254 (362)
T ss_pred EcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheee
Confidence 01111 11 11112222 6778999999999999999999999999988877764
Q ss_pred eEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 127 CRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 127 ~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
..+.-+| .+.+|++++.||.|++||++
T Consensus 255 i~~~~~~-~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 255 IASYTNP-EHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred eEEEecC-CceEEEEeccCceEEEEEcc
Confidence 4444555 67899999999999999985
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-21 Score=122.15 Aligned_cols=138 Identities=28% Similarity=0.384 Sum_probs=111.5
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE-eecCCCCceE
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI-HHNNQTGRWI 80 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~-~~~~~~~~~~ 80 (154)
++++.|+.|++||++..+. ...+..|...+.++.|+|+++.+++++.++.+++||++..+....+ .+..
T Consensus 151 ~~~~~~~~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~------ 220 (289)
T cd00200 151 ASSSQDGTIKLWDLRTGKC----VATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN------ 220 (289)
T ss_pred EEEcCCCcEEEEEcccccc----ceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCC------
Confidence 4556699999999986653 4444588889999999999999999999999999999876555444 2221
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
....+.|+|++.++++++.++.+++|++.+++.+..+..+.... ..++|+| ++.+|++++.|+.+++|+
T Consensus 221 ~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i--~~~~~~~-~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 221 GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSV--TSLAWSP-DGKRLASGSADGTIRIWD 289 (289)
T ss_pred ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcE--EEEEECC-CCCEEEEecCCCeEEecC
Confidence 23457899998888888889999999999988888887554333 6789999 678999999999999996
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.3e-21 Score=119.84 Aligned_cols=142 Identities=21% Similarity=0.292 Sum_probs=113.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
+++++.|+.|++|++...+. ...+..|...+.++.|+|+++++++++.++.+.+||+++.+....+. .+..
T Consensus 66 l~~~~~~~~i~i~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~-- 136 (289)
T cd00200 66 LASGSSDKTIRLWDLETGEC----VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR---GHTD-- 136 (289)
T ss_pred EEEEcCCCeEEEEEcCcccc----eEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec---cCCC--
Confidence 47888999999999987643 44555888899999999998888888889999999998665544433 1111
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
....+.|+|++.++++++.++.+++||+++++.+..+..+.... ..+.++| +++.+++++.|+.|++||+.
T Consensus 137 ~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i--~~~~~~~-~~~~l~~~~~~~~i~i~d~~ 207 (289)
T cd00200 137 WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEV--NSVAFSP-DGEKLLSSSSDGTIKLWDLS 207 (289)
T ss_pred cEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCcccc--ceEEECC-CcCEEEEecCCCcEEEEECC
Confidence 23466899999999998889999999999888888887554333 5789999 66788888889999999973
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=123.56 Aligned_cols=143 Identities=21% Similarity=0.185 Sum_probs=117.3
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCC-CCceE
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQ-TGRWI 80 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~-~~~~~ 80 (154)
++|-.|++|++||.+... ......-.+.|+++..++++..+.+++.|.++.+.|+++.+....+..... .+..
T Consensus 316 ~SgH~DkkvRfwD~Rs~~-----~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asD- 389 (459)
T KOG0288|consen 316 ISGHFDKKVRFWDIRSAD-----KTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASD- 389 (459)
T ss_pred eecccccceEEEeccCCc-----eeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccc-
Confidence 567788999999988766 344444455999999999999999999999999999999887766643221 1111
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
...+.|+|++.|+++|+.||.|+||++.++++...+...+......++.|+| .+..+++++.++.+.+|.
T Consensus 390 -wtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~-sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 390 -WTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP-SGSGLLSADKQKAVTLWT 459 (459)
T ss_pred -cceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcC-CCchhhcccCCcceEecC
Confidence 2257899999999999999999999999999999998776664458899999 789999999999999993
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-21 Score=116.45 Aligned_cols=136 Identities=15% Similarity=0.190 Sum_probs=109.2
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe-ecCCCCce
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQTGRW 79 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~ 79 (154)
++|+.|.+|++|+...+. +++.. +|...|..++.+.+...|++++.|..+.+||+.+++....+. |.. .
T Consensus 33 ltcGsdrtvrLWNp~rg~-----liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~a----q 103 (307)
T KOG0316|consen 33 LTCGSDRTVRLWNPLRGA-----LIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLA----Q 103 (307)
T ss_pred EEcCCCceEEeecccccc-----eeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccc----e
Confidence 689999999999998876 45444 999999999999999999999999999999999998775543 333 2
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCC--ccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQ--RRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+. .++|+.+...+++|+.|..+|+||.++ .++++.+......+. ++.. .+..+++|+.||+++.||+
T Consensus 104 VN--tV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~--Si~v---~~heIvaGS~DGtvRtydi 172 (307)
T KOG0316|consen 104 VN--TVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVS--SIDV---AEHEIVAGSVDGTVRTYDI 172 (307)
T ss_pred ee--EEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCcee--EEEe---cccEEEeeccCCcEEEEEe
Confidence 33 568999999999999999999999985 467777764444443 3333 3456888889999998886
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-21 Score=131.51 Aligned_cols=137 Identities=18% Similarity=0.263 Sum_probs=111.4
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|++|+.|.++++||..++.. ...+.+|.+.|.++.. ....+++|+.|.+|++|+++++.....+.. +...+
T Consensus 264 lvsgS~D~t~rvWd~~sg~C----~~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~---h~~~V 334 (537)
T KOG0274|consen 264 LVSGSTDKTERVWDCSTGEC----THSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVTNGACLNLLRG---HTGPV 334 (537)
T ss_pred EEEEecCCcEEeEecCCCcE----EEEecCCCceEEEEEc--cCceEeeccCCceEEEEeccCcceEEEecc---ccccE
Confidence 57899999999999998884 4444489999999987 456788899999999999998887776652 22234
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.++ .. ++.++++|+.|++|++||+.+++++.++.+|...+. ++.+.+ . +.+++|+.|++|++||+.
T Consensus 335 ~~v--~~--~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~--sl~~~~-~-~~~~Sgs~D~~IkvWdl~ 400 (537)
T KOG0274|consen 335 NCV--QL--DEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVY--SLIVDS-E-NRLLSGSLDTTIKVWDLR 400 (537)
T ss_pred EEE--Ee--cCCEEEEEecCceEEEEEhhhceeeeeecCCcceEE--EEEecC-c-ceEEeeeeccceEeecCC
Confidence 433 23 388999999999999999999999999999876665 455544 2 899999999999999984
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.9e-21 Score=129.80 Aligned_cols=140 Identities=16% Similarity=0.255 Sum_probs=115.7
Q ss_pred ecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEE
Q 038702 4 SSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSF 83 (154)
Q Consensus 4 ~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (154)
|+.=|++-||+.+.... ..+..+|...+.+++++|||+++++|+.||.|++||...+.+...+.. +...+.
T Consensus 326 ~~klgQLlVweWqsEsY----VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFte---Hts~Vt-- 396 (893)
T KOG0291|consen 326 CSKLGQLLVWEWQSESY----VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTE---HTSGVT-- 396 (893)
T ss_pred CCccceEEEEEeeccce----eeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEecc---CCCceE--
Confidence 34457999999998775 666779999999999999999999999999999999998877665542 222233
Q ss_pred EEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCC-eEEEeeCC
Q 038702 84 RAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGG-QVYVWTSD 154 (154)
Q Consensus 84 ~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~~wd~~ 154 (154)
.+.|+..++.+++++.||+||.||+...+..+++..+.... ..+++.+| .+.+++.|+.|. .|++|+++
T Consensus 397 ~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Q-fscvavD~-sGelV~AG~~d~F~IfvWS~q 466 (893)
T KOG0291|consen 397 AVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQ-FSCVAVDP-SGELVCAGAQDSFEIFVWSVQ 466 (893)
T ss_pred EEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCcee-eeEEEEcC-CCCEEEeeccceEEEEEEEee
Confidence 45789999999999999999999999999999998765443 36788888 778999998876 59999875
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-21 Score=134.88 Aligned_cols=148 Identities=20% Similarity=0.292 Sum_probs=114.7
Q ss_pred Ceeec--CCCcEEEEEccCCC-------CCCCCCc-eeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE
Q 038702 1 MATSS--TDGTACIWDLRSMA-------TDKPEPT-KVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI 70 (154)
Q Consensus 1 l~~~~--~d~~v~vw~~~~~~-------~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~ 70 (154)
++||+ .|+.+++|+...-. ...+... ....|.+.|.|+.|+|||++||+|+.|+.|.+|..........+
T Consensus 28 ~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~f 107 (942)
T KOG0973|consen 28 FATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVF 107 (942)
T ss_pred EecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccc
Confidence 47888 89999999975421 1111222 33489999999999999999999999999999998741100011
Q ss_pred ---------------eecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCC
Q 038702 71 ---------------HHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQ 135 (154)
Q Consensus 71 ---------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (154)
.....+. ..+..++|+|++.+|++++.|++|.+|+.++.+.+..+++|+..+. .+.|+| -
T Consensus 108 gs~g~~~~vE~wk~~~~l~~H~--~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VK--Gvs~DP-~ 182 (942)
T KOG0973|consen 108 GSTGGAKNVESWKVVSILRGHD--SDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVK--GVSWDP-I 182 (942)
T ss_pred cccccccccceeeEEEEEecCC--CccceeccCCCccEEEEecccceEEEEccccceeeeeeeccccccc--ceEECC-c
Confidence 1111111 1234679999999999999999999999999999999999887775 689999 8
Q ss_pred ccEEEEEcCCCeEEEeeC
Q 038702 136 VGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 136 ~~~l~~~~~d~~i~~wd~ 153 (154)
+++|++-+.|++|++|+.
T Consensus 183 Gky~ASqsdDrtikvwrt 200 (942)
T KOG0973|consen 183 GKYFASQSDDRTLKVWRT 200 (942)
T ss_pred cCeeeeecCCceEEEEEc
Confidence 899999999999999985
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-21 Score=118.22 Aligned_cols=145 Identities=19% Similarity=0.287 Sum_probs=115.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCC-------CC----ceeecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccce
Q 038702 1 MATSSTDGTACIWDLRSMATDKP-------EP----TKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTA 68 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~-------~~----~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~ 68 (154)
+++|+.||.+.+||++....... .+ ..-.+|+..|.++.|=| |.-.|.+++.|.++++||..+.+...
T Consensus 59 mlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~ 138 (397)
T KOG4283|consen 59 MLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAV 138 (397)
T ss_pred EeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeE
Confidence 47899999999999976442110 01 11126888999999999 66689999999999999999887776
Q ss_pred eEeecCCCCceEeEEEEEEcCC---CcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCC
Q 038702 69 MIHHNNQTGRWISSFRAIWGWD---DSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGG 145 (154)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 145 (154)
.+.... .+++-+++|- .-++++|..+-.|++.|+.+|..-+++.+|..++. ++.|+|...-.|++|+.|
T Consensus 139 ~F~me~------~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vl--aV~Wsp~~e~vLatgsaD 210 (397)
T KOG4283|consen 139 DFKMEG------KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVL--AVEWSPSSEWVLATGSAD 210 (397)
T ss_pred EeecCc------eeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceE--EEEeccCceeEEEecCCC
Confidence 665433 3445567763 34678888888999999999999999999988874 789999777789999999
Q ss_pred CeEEEeeC
Q 038702 146 GQVYVWTS 153 (154)
Q Consensus 146 ~~i~~wd~ 153 (154)
|.|++||+
T Consensus 211 g~irlWDi 218 (397)
T KOG4283|consen 211 GAIRLWDI 218 (397)
T ss_pred ceEEEEEe
Confidence 99999997
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-20 Score=123.32 Aligned_cols=142 Identities=16% Similarity=0.287 Sum_probs=113.4
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccce--eEeecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTA--MIHHNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~--~~~~~~~~~~ 78 (154)
++.|+.|+.|+||.+...... .......|.++|+++++||++.+|+++...+.+.+||..+.+... ...|..
T Consensus 458 vaVGG~Dgkvhvysl~g~~l~--ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHta---- 531 (603)
T KOG0318|consen 458 VAVGGQDGKVHVYSLSGDELK--EEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTA---- 531 (603)
T ss_pred EEEecccceEEEEEecCCccc--ceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeee----
Confidence 367999999999999875531 134556899999999999999999999999999999999877621 112222
Q ss_pred eEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 79 WISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.+.+++|+|+..++++|+.|..|.||++..+.....++..|...+ ..+.|- ++..+++.+.|..|++|++
T Consensus 532 --kI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gV-n~v~wl--de~tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 532 --KINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGV-NSVAWL--DESTVVSSGQDANIKVWNV 601 (603)
T ss_pred --eEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCc-eeEEEe--cCceEEeccCcceeEEecc
Confidence 455789999999999999999999999987655455554444443 678887 4689999999999999986
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.6e-21 Score=123.40 Aligned_cols=152 Identities=39% Similarity=0.641 Sum_probs=128.8
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEec----cccccceeEeecCCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSG----VNFENTAMIHHNNQT 76 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~----~~~~~~~~~~~~~~~ 76 (154)
|+||+.|++++|||++....+....+....|...|.+..|||.+-.|++.+.|..|+|||. ...+....+.|...+
T Consensus 338 laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t 417 (498)
T KOG4328|consen 338 LATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRT 417 (498)
T ss_pred eeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcc
Confidence 6899999999999999866544224566699999999999998777999999999999999 455666778899999
Q ss_pred CceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 77 GRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
+.++..+.+.|.|+..+++.|-.-..|-|+|...++.+..+..+....++....|||.+..+++.++..|.|++|-
T Consensus 418 ~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 418 GRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred cccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence 9999999999999999999999999999999999998888877777666677899994433566666889999984
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.1e-21 Score=126.17 Aligned_cols=140 Identities=17% Similarity=0.230 Sum_probs=115.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC-CCCEEEEee--CCCeEEEEeccccccceeEeecCCCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP-SGSSLATTS--FDDTIGIWSGVNFENTAMIHHNNQTG 77 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~--~d~~v~~~~~~~~~~~~~~~~~~~~~ 77 (154)
||+|+.|+.+.|||...... ...+..|.+.|..++|+| ....||+|+ .|+.|++||..++..........
T Consensus 316 lASGgnDN~~~Iwd~~~~~p----~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgs--- 388 (484)
T KOG0305|consen 316 LASGGNDNVVFIWDGLSPEP----KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGS--- 388 (484)
T ss_pred eccCCCccceEeccCCCccc----cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCC---
Confidence 58999999999999966554 566669999999999999 667888865 59999999999877665544333
Q ss_pred ceEeEEEEEEcCCCcEEEEE--ccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 78 RWISSFRAIWGWDDSCIFIG--NMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~--~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
++..+.|++..+.|+++ ..++.|.||+..+.+.+..+.+|...+ ..++++| ++..+++|+.|.++++|++
T Consensus 389 ---QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RV--l~la~SP-dg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 389 ---QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRV--LYLALSP-DGETIVTGAADETLRFWNL 460 (484)
T ss_pred ---ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCccee--EEEEECC-CCCEEEEecccCcEEeccc
Confidence 35578999988666554 466789999999999999999887664 6899999 8999999999999999986
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.6e-21 Score=115.46 Aligned_cols=147 Identities=14% Similarity=0.128 Sum_probs=114.6
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecC------
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNN------ 74 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~------ 74 (154)
|.+|+.|.+..||-...++. .-...+|.+.|.|+..+-+...+++|+.|.++++||++++++........
T Consensus 25 lFscaKD~~~~vw~s~nGer----lGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~ 100 (327)
T KOG0643|consen 25 LFSCAKDSTPTVWYSLNGER----LGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVD 100 (327)
T ss_pred EEEecCCCCceEEEecCCce----eeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEe
Confidence 57899999999999877764 66666999999999999999999999999999999999876543221100
Q ss_pred ----------------C------------------CCce--------EeEEEEEEcCCCcEEEEEccCCeEEEecCCCcc
Q 038702 75 ----------------Q------------------TGRW--------ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRR 112 (154)
Q Consensus 75 ----------------~------------------~~~~--------~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~ 112 (154)
. ...+ -....+.|.|-+++|++|..||.|.+||+++++
T Consensus 101 F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~ 180 (327)
T KOG0643|consen 101 FSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGK 180 (327)
T ss_pred eccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCc
Confidence 0 0000 012245799999999999999999999999986
Q ss_pred ceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 113 SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.+......+...+ ..++++| +..++++++.|.+-++||.
T Consensus 181 ~~v~s~~~h~~~I-nd~q~s~-d~T~FiT~s~Dttakl~D~ 219 (327)
T KOG0643|consen 181 ELVDSDEEHSSKI-NDLQFSR-DRTYFITGSKDTTAKLVDV 219 (327)
T ss_pred eeeechhhhcccc-ccccccC-CcceEEecccCccceeeec
Confidence 5444332333333 7899999 8899999999999999996
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.6e-21 Score=131.68 Aligned_cols=140 Identities=19% Similarity=0.258 Sum_probs=116.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe-ecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~ 79 (154)
+++|++|-.|+||+..+.+. ...+.+|.+.|+.+.|++.--+++++|.|.+|+||+..+..+..... |..
T Consensus 66 FVSGGDDykIkVWnYk~rrc----lftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnH----- 136 (1202)
T KOG0292|consen 66 FVSGGDDYKIKVWNYKTRRC----LFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNH----- 136 (1202)
T ss_pred EEecCCccEEEEEeccccee----hhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCce-----
Confidence 57999999999999998876 66677999999999999999999999999999999999988877654 322
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCcc---------------------c--------eeEEeCCCcCCcceEEE
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRR---------------------S--------VATLQSPYISAIPCRFH 130 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~---------------------~--------~~~~~~~~~~~~~~~~~ 130 (154)
.+++..|+|....+++++.|.+||+||+..-+ + .+.+.+|..++. -.+
T Consensus 137 -YVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVN--waA 213 (1202)
T KOG0292|consen 137 -YVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVN--WAA 213 (1202)
T ss_pred -EEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccc--eEE
Confidence 56688999999999999999999999985110 0 123446666654 468
Q ss_pred ecCCCccEEEEEcCCCeEEEeeC
Q 038702 131 AHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 131 ~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
|+| .-.+|++|+.|+.|++|..
T Consensus 214 fhp-TlpliVSG~DDRqVKlWrm 235 (1202)
T KOG0292|consen 214 FHP-TLPLIVSGADDRQVKLWRM 235 (1202)
T ss_pred ecC-CcceEEecCCcceeeEEEe
Confidence 999 6679999999999999975
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.2e-21 Score=121.39 Aligned_cols=145 Identities=19% Similarity=0.312 Sum_probs=116.1
Q ss_pred CeeecCCCcEEEEEccCCCCCC--CCC-ceeecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEeecCCC
Q 038702 1 MATSSTDGTACIWDLRSMATDK--PEP-TKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQT 76 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~--~~~-~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~ 76 (154)
+|+||+|.+|.||++..+.... ..+ ..+.+|...|-.++|+| ..+.|++++.|.+|.+||+.+++....+.|..
T Consensus 97 IASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd-- 174 (472)
T KOG0303|consen 97 IASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPD-- 174 (472)
T ss_pred eecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCC--
Confidence 5899999999999998754311 112 33449999999999999 45688999999999999999998877666544
Q ss_pred CceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEc---CCCeEEEeeC
Q 038702 77 GRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT---GGGQVYVWTS 153 (154)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~d~~i~~wd~ 153 (154)
.++++.|+.+|.++++.+.|..|||||.++++.+..-.+|... ......|-. ++.++.+|- .++.+-+||.
T Consensus 175 ----~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~-k~~Raifl~-~g~i~tTGfsr~seRq~aLwdp 248 (472)
T KOG0303|consen 175 ----MVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA-KPARAIFLA-SGKIFTTGFSRMSERQIALWDP 248 (472)
T ss_pred ----eEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCC-CcceeEEec-cCceeeeccccccccceeccCc
Confidence 5678899999999999999999999999999999888655443 335667776 666665553 5788999986
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-20 Score=116.49 Aligned_cols=147 Identities=18% Similarity=0.269 Sum_probs=111.3
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEee-------
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHH------- 72 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~------- 72 (154)
||.|+.||.|.|||+.+.. ..+++ +|..+|++++||++|++|++++.|..+.+||+..+.....+..
T Consensus 38 lAvGc~nG~vvI~D~~T~~-----iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~ 112 (405)
T KOG1273|consen 38 LAVGCANGRVVIYDFDTFR-----IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGA 112 (405)
T ss_pred eeeeccCCcEEEEEccccc-----hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCcccee
Confidence 5889999999999999876 44444 9999999999999999999999999999999988764432211
Q ss_pred ---cCCCCceE-------------------------------eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEe
Q 038702 73 ---NNQTGRWI-------------------------------SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQ 118 (154)
Q Consensus 73 ---~~~~~~~~-------------------------------~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 118 (154)
.......+ ..-+..|.+.|+++++|...|.+.+++..+.+++..++
T Consensus 113 q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~r 192 (405)
T KOG1273|consen 113 QWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFR 192 (405)
T ss_pred eeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeee
Confidence 00000000 00012377889999999999999999999999988887
Q ss_pred CCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 119 SPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
-.....+ -.+.+.. .++.|+.-+.|+.|+.|+++
T Consensus 193 its~~~I-K~I~~s~-~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 193 ITSVQAI-KQIIVSR-KGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred echheee-eEEEEec-cCcEEEEecCCceEEEEehh
Confidence 4432222 3445555 78999999999999999863
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.2e-21 Score=129.32 Aligned_cols=134 Identities=18% Similarity=0.311 Sum_probs=108.2
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
++|+.|.+|++|+++++. ...+. +|.++|+++..+ +..+++|+.|++|++||+.+.+....+.- +...+
T Consensus 305 ~sgs~D~tVkVW~v~n~~-----~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~g---H~~~V 374 (537)
T KOG0274|consen 305 VSGSRDNTVKVWDVTNGA-----CLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSG---HTGRV 374 (537)
T ss_pred eeccCCceEEEEeccCcc-----eEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecC---CcceE
Confidence 568899999999999766 56666 599999999996 88999999999999999997777655432 22233
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCc-cceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQR-RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
. ++.+.+. .++++|+.|+.|++||+++. +++.++.+|...+ ..+.. .+++|++++.|++|++||.
T Consensus 375 ~--sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v--~~l~~---~~~~Lvs~~aD~~Ik~WD~ 440 (537)
T KOG0274|consen 375 Y--SLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLV--SSLLL---RDNFLVSSSADGTIKLWDA 440 (537)
T ss_pred E--EEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccc--ccccc---ccceeEeccccccEEEeec
Confidence 3 4444544 89999999999999999999 9999998776555 23333 4589999999999999986
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.8e-21 Score=125.91 Aligned_cols=141 Identities=18% Similarity=0.201 Sum_probs=117.4
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeec-ccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLS-HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
|++|..+|.|.|||....+. ...+.+ |...|-+++|+ +..+.+|+.|+.|..+|++..+..... ...+..
T Consensus 232 LavG~~~g~v~iwD~~~~k~----~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~--~~~H~q- 302 (484)
T KOG0305|consen 232 LAVGTSDGTVQIWDVKEQKK----TRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVST--LQGHRQ- 302 (484)
T ss_pred EEEeecCCeEEEEehhhccc----cccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhh--hhcccc-
Confidence 57899999999999987764 555555 99999999997 788999999999999999987665441 112222
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEc--CCCeEEEeeC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT--GGGQVYVWTS 153 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~d~~i~~wd~ 153 (154)
.++.+.|++++.++++|+.|+.+.|||..+.+++..+..|...+ -+++|+|....+||+|+ .|++|++||.
T Consensus 303 -eVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAV--KA~awcP~q~~lLAsGGGs~D~~i~fwn~ 375 (484)
T KOG0305|consen 303 -EVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAV--KALAWCPWQSGLLATGGGSADRCIKFWNT 375 (484)
T ss_pred -eeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceee--eEeeeCCCccCceEEcCCCcccEEEEEEc
Confidence 34567899999999999999999999999888888888776665 47899999999999987 7999999996
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.7e-21 Score=128.65 Aligned_cols=140 Identities=16% Similarity=0.189 Sum_probs=123.3
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccce-eEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTA-MIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~-~~~~~~~~~~~ 79 (154)
|+.+--|.+|+||-+.+.+. ...+.||.-||.|+.++|+++.+++|+.|..|++|-+.-+.+-. ++.|..
T Consensus 523 LaVsLLdnTVkVyflDtlKF----flsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdD----- 593 (888)
T KOG0306|consen 523 LAVSLLDNTVKVYFLDTLKF----FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDD----- 593 (888)
T ss_pred EEEEeccCeEEEEEecceee----eeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccC-----
Confidence 45677899999999998876 77788999999999999999999999999999999999887654 444554
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.++.+.|-|+...+.+++.|+.|+-||-...+.++.+.+|+..+. +++..| +|.++++++.|.+|++|..
T Consensus 594 -Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~--cLav~~-~G~~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 594 -SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVW--CLAVSP-NGSFVVSSSHDKSIRLWER 663 (888)
T ss_pred -ceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheee--eeEEcC-CCCeEEeccCCceeEeeec
Confidence 355788999999999999999999999999999999999988875 678888 8899999999999999974
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=112.93 Aligned_cols=148 Identities=20% Similarity=0.258 Sum_probs=108.3
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC--CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP--SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (154)
|+||+.|++|+|+..+.+.. ......+.+|.++|..++|.. -|.+|+++++||.|.||.-++++-.....+.. +..
T Consensus 26 lATcsSD~tVkIf~v~~n~~-s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~-h~~ 103 (299)
T KOG1332|consen 26 LATCSSDGTVKIFEVRNNGQ-SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAA-HSA 103 (299)
T ss_pred eeeecCCccEEEEEEcCCCC-ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhh-hcc
Confidence 68999999999999987653 111445569999999999966 89999999999999999988875444333332 222
Q ss_pred eEeEEEEEEcCC--CcEEEEEccCCeEEEecCCCc-c--ceeEEeCCCcCCcceEEEecCCC--c-----------cEEE
Q 038702 79 WISSFRAIWGWD--DSCIFIGNMTRTVEVISPAQR-R--SVATLQSPYISAIPCRFHAHPHQ--V-----------GTLA 140 (154)
Q Consensus 79 ~~~~~~~~~~~~--~~~l~~~~~d~~i~i~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~--~-----------~~l~ 140 (154)
.+. +++|.|. |-.|++++.||.|.|.+.+.. . .-.....|..++ .+++|.|.. + ..|+
T Consensus 104 SVN--sV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gv--nsVswapa~~~g~~~~~~~~~~~krlv 179 (299)
T KOG1332|consen 104 SVN--SVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGV--NSVSWAPASAPGSLVDQGPAAKVKRLV 179 (299)
T ss_pred cce--eecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccccc--ceeeecCcCCCccccccCcccccceee
Confidence 333 4566664 678999999999999988754 1 122233455555 467777741 1 4699
Q ss_pred EEcCCCeEEEeeCC
Q 038702 141 GATGGGQVYVWTSD 154 (154)
Q Consensus 141 ~~~~d~~i~~wd~~ 154 (154)
+|+.|..|++|+.+
T Consensus 180 SgGcDn~VkiW~~~ 193 (299)
T KOG1332|consen 180 SGGCDNLVKIWKFD 193 (299)
T ss_pred ccCCccceeeeecC
Confidence 99999999999863
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-20 Score=116.37 Aligned_cols=146 Identities=16% Similarity=0.202 Sum_probs=112.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC--CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP--SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (154)
+|++...|.|++||..+++. ...+.+++..+..++|.. .+..+.+++.||+|++||++.......+......+.
T Consensus 43 vav~lSngsv~lyd~~tg~~----l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 43 VAVSLSNGSVRLYDKGTGQL----LEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT 118 (376)
T ss_pred EEEEecCCeEEEEeccchhh----hheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence 46788899999999998775 566669999999999977 678899999999999999999877655544333322
Q ss_pred eEeEEEEEEcCCCcEEEEEc----cCCeEEEecCCCccc-eeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 79 WISSFRAIWGWDDSCIFIGN----MTRTVEVISPAQRRS-VATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~----~d~~i~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
... ++.-+..++.+++|. .+-.|.+||+|..+. +..+...|...+ +.++|+|.++++|++|+.||.|.++|+
T Consensus 119 ~f~--~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDV-T~lrFHP~~pnlLlSGSvDGLvnlfD~ 195 (376)
T KOG1188|consen 119 PFI--CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDV-TQLRFHPSDPNLLLSGSVDGLVNLFDT 195 (376)
T ss_pred cce--EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcc-eeEEecCCCCCeEEeecccceEEeeec
Confidence 222 223334567777775 456799999998766 666654444444 689999999999999999999999997
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.2e-20 Score=110.37 Aligned_cols=140 Identities=22% Similarity=0.302 Sum_probs=113.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|++++.|.+|++||++..++ .......+.=.-+.|+|+|++++.++.|..|...|.++.+..........
T Consensus 80 ~atas~dk~ir~wd~r~~k~-----~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e----- 149 (313)
T KOG1407|consen 80 FATASGDKTIRIWDIRSGKC-----TARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFE----- 149 (313)
T ss_pred eEEecCCceEEEEEeccCcE-----EEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccce-----
Confidence 57899999999999999874 44444444445678999999999999999999999998776654433222
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.-.+.|+.++.+++.....|.|.|......+++..++.|.... .++.|+| ++++|++|+.|-.+.+||++
T Consensus 150 -~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snC--icI~f~p-~GryfA~GsADAlvSLWD~~ 219 (313)
T KOG1407|consen 150 -VNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNC--ICIEFDP-DGRYFATGSADALVSLWDVD 219 (313)
T ss_pred -eeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcce--EEEEECC-CCceEeeccccceeeccChh
Confidence 1245678777777776778999999999999999999887555 5789999 99999999999999999985
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.9e-20 Score=125.68 Aligned_cols=146 Identities=16% Similarity=0.219 Sum_probs=113.8
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEecccccc-----ce--eEeecC
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN-----TA--MIHHNN 74 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~-----~~--~~~~~~ 74 (154)
++|...|.+.++|+.+... ......|.+.|.+++.+|++..+++|+.|.+|++||..-... .. .+.+..
T Consensus 428 v~G~k~Gel~vfdlaS~~l----~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~r 503 (888)
T KOG0306|consen 428 VLGTKNGELQVFDLASASL----VETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTR 503 (888)
T ss_pred EEeccCCceEEEEeehhhh----hhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccce
Confidence 5667777777777766553 333448999999999999999999999999999999753211 11 111211
Q ss_pred CCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 75 QTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.-.-.-.++++.++||+++|+.+-.|+++++|-+.+.+....+.+|.-++. ++..+| ++.+++||+.|..|++|-+|
T Consensus 504 tLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~--smDIS~-DSklivTgSADKnVKiWGLd 580 (888)
T KOG0306|consen 504 TLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVL--SMDISP-DSKLIVTGSADKNVKIWGLD 580 (888)
T ss_pred EEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeeccccccee--EEeccC-CcCeEEeccCCCceEEeccc
Confidence 111112356788999999999999999999999999999999999988875 678888 88999999999999999764
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.7e-20 Score=124.83 Aligned_cols=146 Identities=12% Similarity=0.255 Sum_probs=115.4
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe---e--cCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH---H--NNQ 75 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~---~--~~~ 75 (154)
+++|+-|+.||||++...+ ......-..-|++++|.|+|+..+.|+.+|.+++|+....+...... + ...
T Consensus 425 FiSGSLD~KvRiWsI~d~~-----Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~ 499 (712)
T KOG0283|consen 425 FISGSLDGKVRLWSISDKK-----VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKK 499 (712)
T ss_pred EeecccccceEEeecCcCe-----eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccc
Confidence 5899999999999998765 34444556899999999999999999999999999998766543221 1 111
Q ss_pred CCceEeEEEEEEcCC-CcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 76 TGRWISSFRAIWGWD-DSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 76 ~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.+..+.. +.|.|. ...+++.+.|..|||||.++.+++..+++.+.........|.. ++.+|++++.|..|++|+.+
T Consensus 500 ~~~rITG--~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~-Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 500 QGKRITG--LQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSS-DGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred cCceeee--eEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEcc-CCCEEEEeecCceEEEEeCC
Confidence 2223443 455553 4467777889999999999999999999877766657788888 99999999999999999863
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.1e-20 Score=118.24 Aligned_cols=121 Identities=17% Similarity=0.132 Sum_probs=99.5
Q ss_pred cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCC
Q 038702 30 SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPA 109 (154)
Q Consensus 30 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~ 109 (154)
.|.+.|..+.||++|++||+++.|.+..+|++..............+.. .+.-+.|+||.++|++++.|..+++||+.
T Consensus 222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~--~V~yi~wSPDdryLlaCg~~e~~~lwDv~ 299 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQ--PVSYIMWSPDDRYLLACGFDEVLSLWDVD 299 (519)
T ss_pred hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccC--ceEEEEECCCCCeEEecCchHheeeccCC
Confidence 7999999999999999999999999999999877655433332222222 23356899999999999999999999999
Q ss_pred CccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 110 QRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
++.+...+..... ....+.+|.| ++..+++|+.|+++..||+|
T Consensus 300 tgd~~~~y~~~~~-~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlD 342 (519)
T KOG0293|consen 300 TGDLRHLYPSGLG-FSVSSCAWCP-DGFRFVTGSPDRTIIMWDLD 342 (519)
T ss_pred cchhhhhcccCcC-CCcceeEEcc-CCceeEecCCCCcEEEecCC
Confidence 9999888774433 3336789999 88999999999999999985
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.9e-20 Score=121.33 Aligned_cols=144 Identities=13% Similarity=0.233 Sum_probs=116.2
Q ss_pred CeeecCCCcEEEEEccCCCC------CCCCCceee-cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE-ee
Q 038702 1 MATSSTDGTACIWDLRSMAT------DKPEPTKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI-HH 72 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~------~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~-~~ 72 (154)
+|+|+-|+.|.+||+..+.. .......+. ++..+|++++.++.|..+++|+..+-+++||.++.+....+ +|
T Consensus 133 vaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGH 212 (735)
T KOG0308|consen 133 VASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGH 212 (735)
T ss_pred EEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeecc
Confidence 47899999999999986622 111112223 78999999999999999999999999999999998766444 34
Q ss_pred cCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 73 NNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
.. .+++ +..+++|..+++++.||+|++||+.+.+++.++..|..++ +++..+| .=..+.+|+.||.|..=|
T Consensus 213 Td----NVr~--ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~V--WaL~~~~-sf~~vYsG~rd~~i~~Td 283 (735)
T KOG0308|consen 213 TD----NVRV--LLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGV--WALQSSP-SFTHVYSGGRDGNIYRTD 283 (735)
T ss_pred cc----ceEE--EEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCce--EEEeeCC-CcceEEecCCCCcEEecc
Confidence 33 3454 3568999999999999999999999999999999887774 5777777 667899999999998765
Q ss_pred C
Q 038702 153 S 153 (154)
Q Consensus 153 ~ 153 (154)
+
T Consensus 284 l 284 (735)
T KOG0308|consen 284 L 284 (735)
T ss_pred c
Confidence 4
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.9e-20 Score=113.01 Aligned_cols=119 Identities=18% Similarity=0.276 Sum_probs=89.1
Q ss_pred cccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecC
Q 038702 30 SHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISP 108 (154)
Q Consensus 30 ~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~ 108 (154)
.-.+.|.+|+||| ...++++++.|++||+|+++........... .+ ...+++++|+.+|..+++|+.|+.+++||+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~-~~--~~PvL~v~WsddgskVf~g~~Dk~~k~wDL 101 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQ-SH--DGPVLDVCWSDDGSKVFSGGCDKQAKLWDL 101 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhh-cc--CCCeEEEEEccCCceEEeeccCCceEEEEc
Confidence 4567899999999 5567779999999999999875333221111 11 124568899999999999999999999999
Q ss_pred CCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 109 AQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.+++ ...+..|...+..+.+.-.+ ....|++|+.|.+|++||.
T Consensus 102 ~S~Q-~~~v~~Hd~pvkt~~wv~~~-~~~cl~TGSWDKTlKfWD~ 144 (347)
T KOG0647|consen 102 ASGQ-VSQVAAHDAPVKTCHWVPGM-NYQCLVTGSWDKTLKFWDT 144 (347)
T ss_pred cCCC-eeeeeecccceeEEEEecCC-CcceeEecccccceeeccc
Confidence 9995 45566676666544333233 3458999999999999996
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-19 Score=113.94 Aligned_cols=145 Identities=20% Similarity=0.208 Sum_probs=103.4
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|++||.||+|+|||++.+..+. ......|.+.|+.|.|+..-.+|++|+.||+++|||++..+..........+...+
T Consensus 273 faScS~DgsIrIWDiRs~~~~~--~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pI 350 (440)
T KOG0302|consen 273 FASCSCDGSIRIWDIRSGPKKA--AVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPI 350 (440)
T ss_pred EEeeecCceEEEEEecCCCccc--eeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCe
Confidence 5899999999999999874421 44446899999999999988899999999999999999866553332222233333
Q ss_pred eEEEEEEcCC-CcEEEEEccCCeEEEecCCCccc--------ee--------EEeCCCcCCcceEEEecCCCccEEEEEc
Q 038702 81 SSFRAIWGWD-DSCIFIGNMTRTVEVISPAQRRS--------VA--------TLQSPYISAIPCRFHAHPHQVGTLAGAT 143 (154)
Q Consensus 81 ~~~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~--------~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 143 (154)
.++.|+|. ...+++++.|..|.+||+.--.- .. .+.-|....-.-.+.|++..+.++++.+
T Consensus 351 --tsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa 428 (440)
T KOG0302|consen 351 --TSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTA 428 (440)
T ss_pred --eEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEec
Confidence 36789985 56888899999999999862110 00 1111211111235789998888999999
Q ss_pred CCCeEE
Q 038702 144 GGGQVY 149 (154)
Q Consensus 144 ~d~~i~ 149 (154)
.||--.
T Consensus 429 ~dGfnV 434 (440)
T KOG0302|consen 429 IDGFNV 434 (440)
T ss_pred ccceeE
Confidence 998643
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.6e-20 Score=120.23 Aligned_cols=145 Identities=16% Similarity=0.164 Sum_probs=113.4
Q ss_pred eeecCCCcEEEEEccCCCCCCCC-CceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 2 ATSSTDGTACIWDLRSMATDKPE-PTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
.||+ .|-|+|||+.....+.+. .+........|+++...|+|+.|++|++-.++.|||+..........- .....
T Consensus 435 yTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikael---tssap 510 (705)
T KOG0639|consen 435 YTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAEL---TSSAP 510 (705)
T ss_pred EecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhc---CCcch
Confidence 3444 477999999765432221 222234667899999999999999999999999999987655432221 11122
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.++.++.+||.+..++++.||+|+|||+.....++.+++|..+.. ++..++ ++..|-+|+-|.+|+.||+
T Consensus 511 aCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGas--cIdis~-dGtklWTGGlDntvRcWDl 580 (705)
T KOG0639|consen 511 ACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS--CIDISK-DGTKLWTGGLDNTVRCWDL 580 (705)
T ss_pred hhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCce--eEEecC-CCceeecCCCccceeehhh
Confidence 455678899999999999999999999999999999999988875 566777 7899999999999999997
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.8e-20 Score=116.56 Aligned_cols=141 Identities=11% Similarity=0.207 Sum_probs=109.8
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|++|..|+.|.+||++...+ .+..--...-..|+|+|.+-.|.+|++|..+..+|++....+...... +..
T Consensus 203 Las~~sDrsIvLyD~R~~~P-----l~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~d----hvs 273 (433)
T KOG0268|consen 203 LASCASDRSIVLYDLRQASP-----LKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKD----HVS 273 (433)
T ss_pred eeeeccCCceEEEecccCCc-----cceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcc----cce
Confidence 57788999999999998773 433344555678999998889999999999999999987665433221 112
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
.++.+.|+|.|+-+++|+.|.+||||..+.+..-......... ...++.|+. +.+++++|+.|+.|++|.
T Consensus 274 AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq-~V~~Vk~S~-Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 274 AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQ-HVFCVKYSM-DSKYIISGSDDGNVRLWK 343 (433)
T ss_pred eEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhh-eeeEEEEec-cccEEEecCCCcceeeee
Confidence 5678899999999999999999999999877654443322222 225788888 889999999999999996
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.3e-19 Score=114.11 Aligned_cols=144 Identities=16% Similarity=0.211 Sum_probs=115.9
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccc------cceeEeecCC
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFE------NTAMIHHNNQ 75 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~------~~~~~~~~~~ 75 (154)
+.|...|.+++|.+.++.. ...+.+|-..|+|+.|+-||.+|++|+.||.|.+|.+...- .+..+.+...
T Consensus 97 ~ag~i~g~lYlWelssG~L----L~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~ 172 (476)
T KOG0646|consen 97 LAGTISGNLYLWELSSGIL----LNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSD 172 (476)
T ss_pred EeecccCcEEEEEeccccH----HHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeecc
Confidence 4455899999999999884 33344999999999999999999999999999999875421 2344445556
Q ss_pred CCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 76 TGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+...+..+.+.+.+...++++++.|.++++||+..+..+.++..+ ....+++.+| .+..+..|+.+|.|.+.++
T Consensus 173 HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp---~si~av~lDp-ae~~~yiGt~~G~I~~~~~ 246 (476)
T KOG0646|consen 173 HTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP---SSIKAVALDP-AERVVYIGTEEGKIFQNLL 246 (476)
T ss_pred CcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC---CcceeEEEcc-cccEEEecCCcceEEeeeh
Confidence 676777777766766789999999999999999999998887633 2336789999 7788999999999988664
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-20 Score=126.45 Aligned_cols=140 Identities=16% Similarity=0.205 Sum_probs=117.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE-eecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI-HHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~-~~~~~~~~~ 79 (154)
+++|+.|..+-+|.+..... ...+.+|..+|-++.|++...++++|+.+|+|++||++.......+ +|.
T Consensus 43 ~~~Gg~~~k~~L~~i~kp~~----i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~------ 112 (825)
T KOG0267|consen 43 LVTGGEDEKVNLWAIGKPNA----ITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHL------ 112 (825)
T ss_pred eccCCCceeeccccccCCch----hheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccc------
Confidence 46788999999999876554 5556799999999999999999999999999999999976654322 232
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
..+.++.|+|-+.|.+.|+.|+.+.+||.+-..+.+.+.+|. .++ -.+.+.| ++.+++.|+.|..+++||+
T Consensus 113 ~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~-~vv-~~l~lsP-~Gr~v~~g~ed~tvki~d~ 183 (825)
T KOG0267|consen 113 LNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHT-RVV-DVLRLSP-DGRWVASGGEDNTVKIWDL 183 (825)
T ss_pred cCcceeeeccceEEeccccccccceehhhhccCceeeecCCc-cee-EEEeecC-CCceeeccCCcceeeeecc
Confidence 245577899999999999999999999999888999998844 333 4678999 8899999999999999997
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.9e-19 Score=113.65 Aligned_cols=137 Identities=20% Similarity=0.304 Sum_probs=107.6
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
++||++||+|++||++.... ....+.|..+|-.+.+-|.|.++++++.. .+++||+.++........ .+...+
T Consensus 169 vvtGsYDg~vrl~DtR~~~~----~v~elnhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~--~H~KtV 241 (487)
T KOG0310|consen 169 VVTGSYDGKVRLWDTRSLTS----RVVELNHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMF--NHNKTV 241 (487)
T ss_pred EEecCCCceEEEEEeccCCc----eeEEecCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhh--cccceE
Confidence 47999999999999998753 55666999999999999999999998654 699999996655432211 122233
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEE
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYV 150 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~ 150 (154)
. ++++..++..|++++-|+.+++||+.+.+.+..+.- .+.+ .+++.+| +++.++.|..+|.+.+
T Consensus 242 T--cL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~--~~pv-Lsiavs~-dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 242 T--CLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY--PGPV-LSIAVSP-DDQTVVIGMSNGLVSI 305 (487)
T ss_pred E--EEEeecCCceEeecccccceEEEEccceEEEEeeec--ccce-eeEEecC-CCceEEEecccceeee
Confidence 4 556777899999999999999999998888888762 2233 6889999 7789999999998765
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.9e-18 Score=110.34 Aligned_cols=147 Identities=17% Similarity=0.193 Sum_probs=111.3
Q ss_pred CeeecCCCcEEEEEccCC----CCCCCCCceee-cccCCeEEEEEcCC--CCEEEEeeCCCeEEEEeccccccceeEeec
Q 038702 1 MATSSTDGTACIWDLRSM----ATDKPEPTKVL-SHKRAVHSAYFSPS--GSSLATTSFDDTIGIWSGVNFENTAMIHHN 73 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~----~~~~~~~~~~~-~~~~~v~~~~~~~~--~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~ 73 (154)
|+||+.||.|.+|.+... ....+.+...+ .|+-+|+++...+. ..++++++.|.++++||+..+.....+..+
T Consensus 138 iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp 217 (476)
T KOG0646|consen 138 IITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP 217 (476)
T ss_pred EEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC
Confidence 579999999999997532 11122344444 89999999999875 358999999999999999998776555433
Q ss_pred CCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCc----------------cceeEEeCCCcCCcceEEEecCCCcc
Q 038702 74 NQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQR----------------RSVATLQSPYISAIPCRFHAHPHQVG 137 (154)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (154)
. ...+++.+|-++.++.|+.+|.|.+.++... ..+..+.+|.......+++.+- ++.
T Consensus 218 ~------si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~-Dgt 290 (476)
T KOG0646|consen 218 S------SIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST-DGT 290 (476)
T ss_pred C------cceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec-Ccc
Confidence 3 2235678999999999999999988776522 2345566776633346778887 889
Q ss_pred EEEEEcCCCeEEEeeCC
Q 038702 138 TLAGATGGGQVYVWTSD 154 (154)
Q Consensus 138 ~l~~~~~d~~i~~wd~~ 154 (154)
+|++|+.||++++||+.
T Consensus 291 lLlSGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 291 LLLSGDEDGKVCVWDIY 307 (476)
T ss_pred EEEeeCCCCCEEEEecc
Confidence 99999999999999973
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-18 Score=106.56 Aligned_cols=108 Identities=21% Similarity=0.219 Sum_probs=88.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCC--EEEEeeCCCeEEEEeccccccceeEe-ecCCCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGS--SLATTSFDDTIGIWSGVNFENTAMIH-HNNQTG 77 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~ 77 (154)
+++|+.|-+|+|||++.... ...+..|.+.|+++.|.+... .|++|+.||.|.+|+.........+. |..
T Consensus 56 ~aSGssDetI~IYDm~k~~q----lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~--- 128 (362)
T KOG0294|consen 56 VASGSSDETIHIYDMRKRKQ----LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKG--- 128 (362)
T ss_pred EeccCCCCcEEEEeccchhh----hcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccc---
Confidence 57899999999999998765 666779999999999998665 89999999999999998876554443 222
Q ss_pred ceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEe
Q 038702 78 RWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQ 118 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 118 (154)
.+. .++.+|.+++.++.+.|+.+++||+-.|+.-..++
T Consensus 129 -~Vt--~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~ 166 (362)
T KOG0294|consen 129 -QVT--DLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN 166 (362)
T ss_pred -ccc--eeEecCCCceEEEEcCCceeeeehhhcCccceeec
Confidence 233 56789999999999999999999998776554444
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-18 Score=107.04 Aligned_cols=135 Identities=16% Similarity=0.260 Sum_probs=107.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|+++++||++++||+.... ....+.|..++.+++|.+ ...+++|+.||.|+.+|+.+......-.|... +
T Consensus 28 LLvssWDgslrlYdv~~~~-----l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~----i 97 (323)
T KOG1036|consen 28 LLVSSWDGSLRLYDVPANS-----LKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEG----I 97 (323)
T ss_pred EEEEeccCcEEEEeccchh-----hhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcceeeccCCCc----e
Confidence 5678899999999998764 555668999999999987 56789999999999999999887766655442 3
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
. ++.+.+....+++|+.|++|++||.+.......+.... .+ .++.. .++.|+.|+.|..+.+||+
T Consensus 98 ~--ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kV--y~~~v---~g~~LvVg~~~r~v~iyDL 162 (323)
T KOG1036|consen 98 R--CIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KV--YCMDV---SGNRLVVGTSDRKVLIYDL 162 (323)
T ss_pred E--EEEeeccCCeEEEcccCccEEEEeccccccccccccCc-eE--EEEec---cCCEEEEeecCceEEEEEc
Confidence 3 45677888899999999999999999865555554322 22 23333 5688999999999999998
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.7e-19 Score=107.09 Aligned_cols=149 Identities=19% Similarity=0.316 Sum_probs=116.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCC-CEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSG-SSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
+.++|-|.+..|||++.+.. .....++..|..+|..++|...+ +.|++.+.||+++++|++..+...++........
T Consensus 166 igtSSiDTTCTiWdie~~~~-~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~- 243 (364)
T KOG0290|consen 166 IGTSSIDTTCTIWDIETGVS-GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPST- 243 (364)
T ss_pred eEeecccCeEEEEEEeeccc-cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCC-
Confidence 45788999999999988621 11144566999999999999854 5889999999999999999887766643333222
Q ss_pred EeEEEEEEcCC-CcEEEEEccCC-eEEEecCCCc-cceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 80 ISSFRAIWGWD-DSCIFIGNMTR-TVEVISPAQR-RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 80 ~~~~~~~~~~~-~~~l~~~~~d~-~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
..++++|++. .+++++-..|+ .|.|.|++.. .++..+++|...+ ..++|.|..+..|++++.|..+-+||++
T Consensus 244 -pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~V--NgIaWaPhS~~hictaGDD~qaliWDl~ 318 (364)
T KOG0290|consen 244 -PLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASV--NGIAWAPHSSSHICTAGDDCQALIWDLQ 318 (364)
T ss_pred -cceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccc--cceEecCCCCceeeecCCcceEEEEecc
Confidence 2346788874 56888777665 6999999954 5778888776665 5789999888999999999999999985
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-19 Score=109.81 Aligned_cols=145 Identities=18% Similarity=0.188 Sum_probs=111.3
Q ss_pred CeeecCCCcEEEEEccCCCCC------CCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccc----eeE
Q 038702 1 MATSSTDGTACIWDLRSMATD------KPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT----AMI 70 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~----~~~ 70 (154)
+++|.++|.|.+||+.++... .........|..+|.++.+.+.-+.=++|+.+..+..|++...... ...
T Consensus 168 llaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~ 247 (323)
T KOG0322|consen 168 LLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEI 247 (323)
T ss_pred EEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceE
Confidence 478999999999999886320 0112233479999999999987777788999999999998764221 111
Q ss_pred eecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEE
Q 038702 71 HHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYV 150 (154)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~ 150 (154)
.-.++. +. .+...||++.+++++.|+.||+|..++.+++..++-|...+ .+++|+| +.++++.++.|++|.+
T Consensus 248 ~lknpG---v~--gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagv--n~vAfsp-d~~lmAaaskD~rISL 319 (323)
T KOG0322|consen 248 TLKNPG---VS--GVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGV--NAVAFSP-DCELMAAASKDARISL 319 (323)
T ss_pred EecCCC---cc--ceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcce--eEEEeCC-CCchhhhccCCceEEe
Confidence 111111 11 23457899999999999999999999999999998777444 6899999 7799999999999999
Q ss_pred eeC
Q 038702 151 WTS 153 (154)
Q Consensus 151 wd~ 153 (154)
|++
T Consensus 320 WkL 322 (323)
T KOG0322|consen 320 WKL 322 (323)
T ss_pred eec
Confidence 986
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-18 Score=110.74 Aligned_cols=143 Identities=16% Similarity=0.166 Sum_probs=118.3
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe-ecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~ 79 (154)
+++|+.|..+.++|...++. ...+.||.-.|+.+.++|+...+++++.|..|++|............ |.. .
T Consensus 234 ilTGG~d~~av~~d~~s~q~----l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~----~ 305 (506)
T KOG0289|consen 234 ILTGGEDKTAVLFDKPSNQI----LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEE----P 305 (506)
T ss_pred ceecCCCCceEEEecchhhh----hhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccc----c
Confidence 46899999999999988774 44455999999999999999999999999999999988766554333 322 2
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
+. .+..+|.|.||++++.|+...+.|++++..+.........+-..+.+||| ++.+|.+|..|+.+++||+.
T Consensus 306 V~--~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlk 377 (506)
T KOG0289|consen 306 VT--GLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLK 377 (506)
T ss_pred ce--eeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcC
Confidence 33 34568999999999999999999999999887776433434457889999 99999999999999999973
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.5e-19 Score=106.56 Aligned_cols=147 Identities=19% Similarity=0.208 Sum_probs=105.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCC--CCEEEEeeCCCeEEEEeccccccceeEeecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPS--GSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (154)
||+++.||.|.||.-..+. ..+......|...|++++|.|. |-.|+.++.||.|.+.+.+.............+.
T Consensus 73 LAScsYDgkVIiWke~~g~--w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~- 149 (299)
T KOG1332|consen 73 LASCSYDGKVIIWKEENGR--WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHE- 149 (299)
T ss_pred eeEeecCceEEEEecCCCc--hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccc-
Confidence 6899999999999987653 2223444589999999999994 5689999999999999987652211111111111
Q ss_pred eEeEEEEEEcCC---C-----------cEEEEEccCCeEEEecCCCc--cceeEEeCCCcCCcceEEEecCCCc---cEE
Q 038702 79 WISSFRAIWGWD---D-----------SCIFIGNMTRTVEVISPAQR--RSVATLQSPYISAIPCRFHAHPHQV---GTL 139 (154)
Q Consensus 79 ~~~~~~~~~~~~---~-----------~~l~~~~~d~~i~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~l 139 (154)
+-+-+++|.|- | +.|++|+.|+.|+||+...+ +...++.+|...+. .++|.|..+ .+|
T Consensus 150 -~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVR--DVAwaP~~gl~~s~i 226 (299)
T KOG1332|consen 150 -IGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVR--DVAWAPSVGLPKSTI 226 (299)
T ss_pred -cccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhh--hhhhccccCCCceee
Confidence 11224566664 3 57999999999999998865 44556777776664 678888532 479
Q ss_pred EEEcCCCeEEEeeC
Q 038702 140 AGATGGGQVYVWTS 153 (154)
Q Consensus 140 ~~~~~d~~i~~wd~ 153 (154)
+++++||++.||..
T Consensus 227 AS~SqDg~viIwt~ 240 (299)
T KOG1332|consen 227 ASCSQDGTVIIWTK 240 (299)
T ss_pred EEecCCCcEEEEEe
Confidence 99999999999964
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.1e-18 Score=103.43 Aligned_cols=134 Identities=15% Similarity=0.184 Sum_probs=106.7
Q ss_pred CCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEE
Q 038702 6 TDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFR 84 (154)
Q Consensus 6 ~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
.|.+||.-++.+++ .++.+ ||...|.+|+.+|-+..|++++.|++|++||++..++......... . .
T Consensus 78 ~d~tIryLsl~dNk-----ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~------p-i 145 (311)
T KOG1446|consen 78 EDDTIRYLSLHDNK-----YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR------P-I 145 (311)
T ss_pred CCCceEEEEeecCc-----eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC------c-c
Confidence 37899999999887 45555 9999999999999999999999999999999998777665543332 1 3
Q ss_pred EEEcCCCcEEEEEccCCeEEEecCCCc--cceeEEeCC-CcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 85 AIWGWDDSCIFIGNMTRTVEVISPAQR--RSVATLQSP-YISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 85 ~~~~~~~~~l~~~~~d~~i~i~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
++|.|+|-++|++...+.|++||++.. .+..++.-. ........+.|+| +|.+++.++..+.+++.|
T Consensus 146 ~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~-dGK~iLlsT~~s~~~~lD 215 (311)
T KOG1446|consen 146 AAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSP-DGKSILLSTNASFIYLLD 215 (311)
T ss_pred eeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcC-CCCEEEEEeCCCcEEEEE
Confidence 579999999999998889999999953 455555432 2233336889999 889998888888888876
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.7e-19 Score=108.43 Aligned_cols=115 Identities=17% Similarity=0.230 Sum_probs=82.3
Q ss_pred ccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCC-
Q 038702 31 HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPA- 109 (154)
Q Consensus 31 ~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~- 109 (154)
|.-.+..+-....+.++++++.|..|.+|+++ ++.+..+..... ....++.+|+|+++++++..--|++|.+-
T Consensus 186 h~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~-----~n~~aavSP~GRFia~~gFTpDVkVwE~~f 259 (420)
T KOG2096|consen 186 HQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQS-----SNYDAAVSPDGRFIAVSGFTPDVKVWEPIF 259 (420)
T ss_pred cccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccc-----cccceeeCCCCcEEEEecCCCCceEEEEEe
Confidence 34444455555566677788888888888887 333333322211 22356789999999999999999999864
Q ss_pred --Cc-----cceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 110 --QR-----RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 110 --~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.| ..+..+++|...+ ..++|+| ++..+++.+.||++++||.+
T Consensus 260 ~kdG~fqev~rvf~LkGH~saV--~~~aFsn-~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 260 TKDGTFQEVKRVFSLKGHQSAV--LAAAFSN-SSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred ccCcchhhhhhhheeccchhhe--eeeeeCC-CcceeEEEecCCcEEEeecc
Confidence 22 2456677777666 4789999 88999999999999999975
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.2e-18 Score=100.43 Aligned_cols=140 Identities=17% Similarity=0.196 Sum_probs=107.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee---c-----ccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEee
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL---S-----HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHH 72 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~---~-----~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~ 72 (154)
+++|+.|.+|++||++-+.. .... - ..+.|.+++..|.|++|++|-.|.++.+||++.++....+.
T Consensus 197 ~~sgsqdktirfwdlrv~~~-----v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~- 270 (350)
T KOG0641|consen 197 FASGSQDKTIRFWDLRVNSC-----VNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFH- 270 (350)
T ss_pred EEccCCCceEEEEeeeccce-----eeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeC-
Confidence 57899999999999987553 2222 1 23679999999999999999999999999999887765443
Q ss_pred cCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCc---c-ceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeE
Q 038702 73 NNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQR---R-SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQV 148 (154)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 148 (154)
++...++ ++.|+|...|+++++.|..|++-|+... + ++...-.|.... ..+.|+| ..--+++.+.|.++
T Consensus 271 --phsadir--~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~--i~~rwh~-~d~sfisssadkt~ 343 (350)
T KOG0641|consen 271 --PHSADIR--CVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKA--IQCRWHP-QDFSFISSSADKTA 343 (350)
T ss_pred --CCcccee--EEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCce--EEEEecC-ccceeeeccCcceE
Confidence 2222344 5689999999999999999999998632 2 222333344444 4789999 65778899999999
Q ss_pred EEeeC
Q 038702 149 YVWTS 153 (154)
Q Consensus 149 ~~wd~ 153 (154)
.+|-+
T Consensus 344 tlwa~ 348 (350)
T KOG0641|consen 344 TLWAL 348 (350)
T ss_pred EEecc
Confidence 99975
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.2e-19 Score=110.74 Aligned_cols=146 Identities=25% Similarity=0.269 Sum_probs=112.6
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEecc----cccccee-------
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV----NFENTAM------- 69 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~----~~~~~~~------- 69 (154)
+.+++.|.+.+||.++++.+ .....+|.+.|.+++|++.+.++++++.|++.+||... .++....
T Consensus 163 ~gtASADhTA~iWs~Esg~C----L~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEe 238 (481)
T KOG0300|consen 163 CGTASADHTARIWSLESGAC----LATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEE 238 (481)
T ss_pred eeecccccceeEEeeccccc----eeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchh
Confidence 35789999999999999986 66666999999999999999999999999999999721 1110000
Q ss_pred -Eeec-----------------------CCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCc
Q 038702 70 -IHHN-----------------------NQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAI 125 (154)
Q Consensus 70 -~~~~-----------------------~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~ 125 (154)
..+. ...++...+..+.|-..|+.+++++.|.+..+||+++++.+..+.+|.....
T Consensus 239 E~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELt 318 (481)
T KOG0300|consen 239 EEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELT 318 (481)
T ss_pred hhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhcc
Confidence 0000 0011111223445667889999999999999999999999999998876653
Q ss_pred ceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 126 PCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 126 ~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.++-+| ...++++.+.|-+.++||.
T Consensus 319 --HcstHp-tQrLVvTsSrDtTFRLWDF 343 (481)
T KOG0300|consen 319 --HCSTHP-TQRLVVTSSRDTTFRLWDF 343 (481)
T ss_pred --ccccCC-cceEEEEeccCceeEeccc
Confidence 567888 6688999999999999996
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.1e-19 Score=113.71 Aligned_cols=148 Identities=18% Similarity=0.193 Sum_probs=114.5
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
+++|..-|+|-+||+...+........+..|..+|.+|.|+| +...+++.+.||++++-|++......++... ...
T Consensus 203 va~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~---~d~ 279 (498)
T KOG4328|consen 203 VAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLD---TDN 279 (498)
T ss_pred EEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcC---ccc
Confidence 478999999999999755544444555569999999999999 5679999999999999999887655444332 112
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccc-eeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRS-VATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.....+.|+.+...++++..=|...+||++++.. ...+..|...+ ..++++|..+.+|++++.|++.+|||+
T Consensus 280 ~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI--~sv~~NP~~p~~laT~s~D~T~kIWD~ 352 (498)
T KOG4328|consen 280 IWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKI--TSVALNPVCPWFLATASLDQTAKIWDL 352 (498)
T ss_pred eeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhccc--ceeecCCCCchheeecccCcceeeeeh
Confidence 2333556777878888888778999999998765 44444455433 689999999999999999999999997
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.8e-19 Score=115.58 Aligned_cols=144 Identities=13% Similarity=0.183 Sum_probs=111.7
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE---------e-
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI---------H- 71 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~---------~- 71 (154)
++|..||.|.|||+..... ...+.+|.+.+.||.++++|..|-+|+-|++|+.||++....+... .
T Consensus 525 FsccsdGnI~vwDLhnq~~----VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~ 600 (705)
T KOG0639|consen 525 FSCCSDGNIAVWDLHNQTL----VRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGY 600 (705)
T ss_pred eeeccCCcEEEEEccccee----eecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheeccc
Confidence 5788999999999998764 5566699999999999999999999999999999999875432110 0
Q ss_pred -------------------e-c-----CCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcc
Q 038702 72 -------------------H-N-----NQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIP 126 (154)
Q Consensus 72 -------------------~-~-----~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~ 126 (154)
+ . ..+-+...++++.|++.|+++++.+.|+.+..|...-|..+...+ ....+.+
T Consensus 601 cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVls 679 (705)
T KOG0639|consen 601 CPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLS 679 (705)
T ss_pred CCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc-ccCccee
Confidence 0 0 001112345678999999999999999999999999888887766 2344544
Q ss_pred eEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 127 CRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 127 ~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+++ +. +..++++|+.|....+|.+
T Consensus 680 CDI--S~-ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 680 CDI--SF-DDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eee--cc-CceEEEecCCCcceEEEEE
Confidence 444 44 5689999999998888864
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-18 Score=120.73 Aligned_cols=147 Identities=17% Similarity=0.252 Sum_probs=108.6
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE----------
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI---------- 70 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~---------- 70 (154)
|++++.|++|.+|+..+.+. ...+.+|.+.|-.+.|.|-|++|++-+.|+++++|+..+......+
T Consensus 144 lvS~s~DnsViiwn~~tF~~----~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~ 219 (942)
T KOG0973|consen 144 LVSVSLDNSVIIWNAKTFEL----LKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLT 219 (942)
T ss_pred EEEecccceEEEEcccccee----eeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCc
Confidence 58899999999999998853 4555699999999999999999999999999999996542211000
Q ss_pred ----e-ecCCC--------------------------------CceEeEEEEEEcCC-------------Cc----EEEE
Q 038702 71 ----H-HNNQT--------------------------------GRWISSFRAIWGWD-------------DS----CIFI 96 (154)
Q Consensus 71 ----~-~~~~~--------------------------------~~~~~~~~~~~~~~-------------~~----~l~~ 96 (154)
+ ...+. ++...+-.++|+|. +. .+++
T Consensus 220 T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~Av 299 (942)
T KOG0973|consen 220 TFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAV 299 (942)
T ss_pred ceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEE
Confidence 0 00000 00001113467661 11 6788
Q ss_pred EccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 97 GNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 97 ~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
|+.|+.|-||.....+++.....-....+ .+++|+| +|..|..++.||+|.+...
T Consensus 300 gSqDrSlSVW~T~~~RPl~vi~~lf~~SI-~DmsWsp-dG~~LfacS~DGtV~~i~F 354 (942)
T KOG0973|consen 300 GSQDRSLSVWNTALPRPLFVIHNLFNKSI-VDMSWSP-DGFSLFACSLDGTVALIHF 354 (942)
T ss_pred ecCCccEEEEecCCCCchhhhhhhhcCce-eeeeEcC-CCCeEEEEecCCeEEEEEc
Confidence 99999999999988888877764444444 7999999 8899999999999998765
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.9e-19 Score=112.55 Aligned_cols=147 Identities=19% Similarity=0.252 Sum_probs=106.9
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE-----------
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI----------- 70 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~----------- 70 (154)
++++.|+.+++|++..... ...+.+|.+.|+++.|......+++|+.|.++++||+....+....
T Consensus 235 iAas~d~~~r~Wnvd~~r~----~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~ 310 (459)
T KOG0288|consen 235 IAASNDKNLRLWNVDSLRL----RHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVC 310 (459)
T ss_pred EeecCCCceeeeeccchhh----hhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEe
Confidence 6789999999999988774 4455599999999999887777999999999999999865432111
Q ss_pred -------eecCC--------CCceE-------eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCC--cCCcc
Q 038702 71 -------HHNNQ--------TGRWI-------SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPY--ISAIP 126 (154)
Q Consensus 71 -------~~~~~--------~~~~~-------~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~--~~~~~ 126 (154)
.|... .+... .+.++..++++..+++++.|.++.+.|+++.+....+.... ...-.
T Consensus 311 ~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDw 390 (459)
T KOG0288|consen 311 SISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDW 390 (459)
T ss_pred cceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccccccc
Confidence 11110 00000 11134556778888888888888888888887776665321 11223
Q ss_pred eEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 127 CRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 127 ~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
..+.|+| ++.|+++|+.||.|+||++
T Consensus 391 trvvfSp-d~~YvaAGS~dgsv~iW~v 416 (459)
T KOG0288|consen 391 TRVVFSP-DGSYVAAGSADGSVYIWSV 416 (459)
T ss_pred ceeEECC-CCceeeeccCCCcEEEEEc
Confidence 5788999 8899999999999999986
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-18 Score=111.39 Aligned_cols=138 Identities=20% Similarity=0.270 Sum_probs=103.9
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccc-eeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT-AMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~-~~~~~~~~~~~~ 79 (154)
|++|+.|..|.||+.++.+. ...+.+|.+.|.+++|-...+.+++++.|+++++|++...... ..++|+..
T Consensus 217 latgg~d~~v~Iw~~~t~eh----v~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~---- 288 (479)
T KOG0299|consen 217 LATGGRDRHVQIWDCDTLEH----VKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDG---- 288 (479)
T ss_pred EEecCCCceEEEecCcccch----hhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccc----
Confidence 58899999999999999874 3445699999999999999999999999999999999877655 34455442
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+. .+.-...++.+-+|+.|+++++|++... ....+.++....- ++++- +...|++|+.+|.|.+|++
T Consensus 289 v~--~IdaL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sid--cv~~I--n~~HfvsGSdnG~IaLWs~ 355 (479)
T KOG0299|consen 289 VL--GIDALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSID--CVAFI--NDEHFVSGSDNGSIALWSL 355 (479)
T ss_pred ee--eechhcccceEEeccccceeEEEecccc-ceeeeeCCCCCee--eEEEe--cccceeeccCCceEEEeee
Confidence 22 2222334667777779999999999433 3334555544444 34444 4689999999999999986
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.1e-19 Score=111.28 Aligned_cols=147 Identities=17% Similarity=0.208 Sum_probs=110.9
Q ss_pred CeeecCCCcEEEEEccCCCCCCC----CCc-eeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccc----------
Q 038702 1 MATSSTDGTACIWDLRSMATDKP----EPT-KVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFE---------- 65 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~----~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~---------- 65 (154)
++||+.|..|++|-+........ ... .+..|...|+++.|+|+|+.|++|+.+|.+.+|......
T Consensus 29 laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~ 108 (434)
T KOG1009|consen 29 LATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADL 108 (434)
T ss_pred eecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhh
Confidence 58999999999999876543221 111 223799999999999999999999999999999876211
Q ss_pred ---cceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEE
Q 038702 66 ---NTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGA 142 (154)
Q Consensus 66 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 142 (154)
..........+. --++.++|+|++.++++++.|+.+++||+..|+.+..+..|...+ ..++|.| .++++++-
T Consensus 109 ~ke~w~v~k~lr~h~--~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yv--qgvawDp-l~qyv~s~ 183 (434)
T KOG1009|consen 109 NKEKWVVKKVLRGHR--DDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYV--QGVAWDP-LNQYVASK 183 (434)
T ss_pred CccceEEEEEecccc--cchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccccc--ceeecch-hhhhhhhh
Confidence 111111111111 124467899999999999999999999999999999988776665 4789999 77899988
Q ss_pred cCCCeEEEee
Q 038702 143 TGGGQVYVWT 152 (154)
Q Consensus 143 ~~d~~i~~wd 152 (154)
+.|...+.+.
T Consensus 184 s~dr~~~~~~ 193 (434)
T KOG1009|consen 184 SSDRHPEGFS 193 (434)
T ss_pred ccCcccceee
Confidence 8888655544
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-18 Score=104.09 Aligned_cols=140 Identities=12% Similarity=0.194 Sum_probs=112.9
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|+||+.+..+||+|++..+. .+..+.+|.+.|..+.|....+.+++++.|++|++||.+++.....+....+.
T Consensus 115 lltgg~ekllrvfdln~p~A---pp~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~V---- 187 (334)
T KOG0278|consen 115 LLTGGQEKLLRVFDLNRPKA---PPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPV---- 187 (334)
T ss_pred hhccchHHHhhhhhccCCCC---CchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCC----
Confidence 57899999999999987654 14555699999999999999999999999999999999999887666544331
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
-++..+++|++|.++ ..+.|.+||..+...++..+.+. ...+...+| +...++.|+.|..++.||.+
T Consensus 188 --tSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~---nV~SASL~P-~k~~fVaGged~~~~kfDy~ 254 (334)
T KOG0278|consen 188 --TSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPC---NVESASLHP-KKEFFVAGGEDFKVYKFDYN 254 (334)
T ss_pred --cceeeccCCCEEEEe-cCceeEEeccccccceeeccCcc---ccccccccC-CCceEEecCcceEEEEEecc
Confidence 256778899887654 46789999999999888876442 234667899 56899999999999999863
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-18 Score=109.91 Aligned_cols=124 Identities=15% Similarity=0.102 Sum_probs=95.8
Q ss_pred ceeecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEe--ecCCCCceEeEEEEEEcCC-CcEEEEEccCC
Q 038702 26 TKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIH--HNNQTGRWISSFRAIWGWD-DSCIFIGNMTR 101 (154)
Q Consensus 26 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~l~~~~~d~ 101 (154)
..+.+|+++|..++|+| +.+.+++|+.|.+|.+|.+.......... .....++.-.+-.++|+|. .+.|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 33458999999999999 67789999999999999997654332111 0001111123345789997 46889999999
Q ss_pred eEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 102 TVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 102 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+|.+|++.+++.+.++. |.. .+.++.|+- ++.+|++.+.|.+|++||.
T Consensus 155 ~v~iWnv~tgeali~l~-hpd--~i~S~sfn~-dGs~l~TtckDKkvRv~dp 202 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPD--MVYSMSFNR-DGSLLCTTCKDKKVRVIDP 202 (472)
T ss_pred eEEEEeccCCceeeecC-CCC--eEEEEEecc-CCceeeeecccceeEEEcC
Confidence 99999999999988887 433 336889998 8999999999999999996
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-17 Score=110.50 Aligned_cols=145 Identities=17% Similarity=0.162 Sum_probs=112.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|++.+.+|+|.-||+.+.+. ........+.|.+++.+|.+..++.|+.||.+...+...........-..+. .
T Consensus 83 LFS~g~sg~i~EwDl~~lk~----~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~---s 155 (691)
T KOG2048|consen 83 LFSSGLSGSITEWDLHTLKQ----KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQK---S 155 (691)
T ss_pred EEeecCCceEEEEecccCce----eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeeccccc---c
Confidence 46788899999999998875 5555577889999999999999999999997766666555443322222222 2
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEe-----CCC-cCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQ-----SPY-ISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
+.+++.|+|++..+++|+.||.|++||...+..+.... ... ...+.+++.+-. ...|++|..-|+|.+||.+
T Consensus 156 RvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr--d~tI~sgDS~G~V~FWd~~ 233 (691)
T KOG2048|consen 156 RVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR--DSTIASGDSAGTVTFWDSI 233 (691)
T ss_pred eEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee--cCcEEEecCCceEEEEccc
Confidence 67789999999999999999999999999988776222 112 445557777764 4789999999999999963
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.4e-18 Score=109.93 Aligned_cols=141 Identities=13% Similarity=0.178 Sum_probs=109.4
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|.+++.|++|++|+++.... ...+++|.+.|.+|....-++.+-+|+.|+++++|++....+.....+.. .+
T Consensus 259 lys~s~Drsvkvw~~~~~s~----vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~----si 330 (479)
T KOG0299|consen 259 LYSASADRSVKVWSIDQLSY----VETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEG----SI 330 (479)
T ss_pred eeeeecCCceEEEehhHhHH----HHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCC----Ce
Confidence 57899999999999998774 55667999999999998888888888899999999995544444333321 12
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcC----------CcceEEEecCCCccEEEEEcCCCeEEE
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYIS----------AIPCRFHAHPHQVGTLAGATGGGQVYV 150 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~l~~~~~d~~i~~ 150 (154)
. +++|- +...+++|+.+|.|.+|++...+++.+....|.- ....+++..| ..+++++|+.+|.|++
T Consensus 331 d--cv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~-~sdL~asGS~~G~vrL 406 (479)
T KOG0299|consen 331 D--CVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIP-GSDLLASGSWSGCVRL 406 (479)
T ss_pred e--eEEEe-cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecc-cCceEEecCCCCceEE
Confidence 2 23333 6678899999999999999999888777632211 1346788888 7899999999999999
Q ss_pred eeC
Q 038702 151 WTS 153 (154)
Q Consensus 151 wd~ 153 (154)
|-+
T Consensus 407 W~i 409 (479)
T KOG0299|consen 407 WKI 409 (479)
T ss_pred EEe
Confidence 975
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.79 E-value=7e-18 Score=103.73 Aligned_cols=141 Identities=14% Similarity=0.179 Sum_probs=109.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCC---CCEEEEeeCCCeEEEEeccccccceeEe-ecCCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPS---GSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQT 76 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~ 76 (154)
+.+++.|.+++|||..+.+ ....+...+.|++-+++|- -.++++|..+-.|++.|+.++.....+. |..
T Consensus 117 FtssSFDhtlKVWDtnTlQ-----~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~-- 189 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQ-----EAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD-- 189 (397)
T ss_pred eecccccceEEEeecccce-----eeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC--
Confidence 3578999999999998876 4556677889999999993 3477888889999999999988765543 433
Q ss_pred CceEeEEEEEEcCCCc-EEEEEccCCeEEEecCCCc-cceeEEeCCCc------------CCcceEEEecCCCccEEEEE
Q 038702 77 GRWISSFRAIWGWDDS-CIFIGNMTRTVEVISPAQR-RSVATLQSPYI------------SAIPCRFHAHPHQVGTLAGA 142 (154)
Q Consensus 77 ~~~~~~~~~~~~~~~~-~l~~~~~d~~i~i~~~~~~-~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~ 142 (154)
.++.+.|+|... .|++|+.||.+|+||++.. .++..+..|.. ......++|.. ++.+++++
T Consensus 190 ----~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS-d~~~l~~~ 264 (397)
T KOG4283|consen 190 ----GVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS-DARYLASC 264 (397)
T ss_pred ----ceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc-cchhhhhc
Confidence 467889999876 5789999999999999854 44444443221 11125678888 88999999
Q ss_pred cCCCeEEEeeC
Q 038702 143 TGGGQVYVWTS 153 (154)
Q Consensus 143 ~~d~~i~~wd~ 153 (154)
+.|..+++|+.
T Consensus 265 gtd~r~r~wn~ 275 (397)
T KOG4283|consen 265 GTDDRIRVWNM 275 (397)
T ss_pred cCccceEEeec
Confidence 99999999985
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.3e-18 Score=114.69 Aligned_cols=145 Identities=23% Similarity=0.319 Sum_probs=107.3
Q ss_pred CeeecCCCcEEEEEccCCCCCCC--CCce-eecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccce-eEeecCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKP--EPTK-VLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTA-MIHHNNQ 75 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~--~~~~-~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~-~~~~~~~ 75 (154)
|+.+++||.|++|.+..+..... .+.. +..|...|+++.|+| ..+.|+++++|.+|++||+++..... ...|..
T Consensus 643 LAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtd- 721 (1012)
T KOG1445|consen 643 LAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTD- 721 (1012)
T ss_pred eeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcC-
Confidence 57899999999999987544222 1223 348999999999999 56789999999999999999876653 444554
Q ss_pred CCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCcc-ceeEEeCCCcCCcceEEEecCCCccEEEEEcCCC----eEEE
Q 038702 76 TGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRR-SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGG----QVYV 150 (154)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~----~i~~ 150 (154)
.++.++|+|+|+.+++.+.||+|++|+.++++ .+..-++.... ....+.|.- ++.+++..+.|. .|.+
T Consensus 722 -----qIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgt-RgARi~wac-dgr~viv~Gfdk~SeRQv~~ 794 (1012)
T KOG1445|consen 722 -----QIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGT-RGARILWAC-DGRIVIVVGFDKSSERQVQM 794 (1012)
T ss_pred -----ceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccC-cceeEEEEe-cCcEEEEecccccchhhhhh
Confidence 57789999999999999999999999998764 34444433322 224556665 677777766553 4666
Q ss_pred eeC
Q 038702 151 WTS 153 (154)
Q Consensus 151 wd~ 153 (154)
||.
T Consensus 795 Y~A 797 (1012)
T KOG1445|consen 795 YDA 797 (1012)
T ss_pred hhh
Confidence 654
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-17 Score=111.49 Aligned_cols=134 Identities=19% Similarity=0.207 Sum_probs=97.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
++|||.|.+|++|.-. +. ...+.+|.+.|+.+++-+++ .|++++.||.|+.|++..........|..
T Consensus 154 ~vTgsaDKtIklWk~~--~~----l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge~l~~~~ghtn------ 220 (745)
T KOG0301|consen 154 YVTGSADKTIKLWKGG--TL----LKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGEVLLEMHGHTN------ 220 (745)
T ss_pred EEeccCcceeeeccCC--ch----hhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccCceeeeeeccce------
Confidence 4688888888888763 21 33445899999999998765 57888999999999994444334444433
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
..+++...+++..++++++|++++||+.. ++.+.+..+.... +++..-+ + .-+++|+.||.|++|..
T Consensus 221 ~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsi--Wsa~~L~-N-gDIvvg~SDG~VrVfT~ 287 (745)
T KOG0301|consen 221 FVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSI--WSAKVLL-N-GDIVVGGSDGRVRVFTV 287 (745)
T ss_pred EEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccce--EEEEEee-C-CCEEEeccCceEEEEEe
Confidence 34455667788999999999999999977 6677776444344 4444444 3 34788999999999964
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.4e-19 Score=122.57 Aligned_cols=150 Identities=18% Similarity=0.218 Sum_probs=113.3
Q ss_pred CeeecCCCcEEEEEccCC--CCCCCCCceeecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEeecCCCC
Q 038702 1 MATSSTDGTACIWDLRSM--ATDKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTG 77 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~ 77 (154)
|+.|.+||.|.+||.... ............|.+.|..+.|++ .++.|++|+.||.|.|||+...+......... ..
T Consensus 83 IaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~-~~ 161 (1049)
T KOG0307|consen 83 IAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQA-PP 161 (1049)
T ss_pred eeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCC-Cc
Confidence 467899999999998763 222222333448999999999999 56699999999999999999877665554221 11
Q ss_pred ceEeEEEEEEcCC-CcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCC---eEEEeeC
Q 038702 78 RWISSFRAIWGWD-DSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGG---QVYVWTS 153 (154)
Q Consensus 78 ~~~~~~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~---~i~~wd~ 153 (154)
..+ ..++|+.. .+.|++++.+|..-|||++..+.+..+..+.....+..++|||+....+++++.|. .|.+||+
T Consensus 162 ~eI--~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDl 239 (1049)
T KOG0307|consen 162 SEI--KCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDL 239 (1049)
T ss_pred ccc--eEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecc
Confidence 222 34578875 45788889999999999999888877775555555678999998877888887654 5899996
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.4e-18 Score=113.81 Aligned_cols=135 Identities=15% Similarity=0.211 Sum_probs=103.5
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
+++||.|.++++|...... ....+|...|.++..-|++ .+++|+.|.+|++|.-.+.. ..+.. +...+
T Consensus 115 ~iSgSWD~TakvW~~~~l~------~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~~l-~tf~g----HtD~V 182 (745)
T KOG0301|consen 115 LISGSWDSTAKVWRIGELV------YSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGTLL-KTFSG----HTDCV 182 (745)
T ss_pred eEecccccceEEecchhhh------cccCCcchheeeeeecCCC-cEEeccCcceeeeccCCchh-hhhcc----chhhe
Confidence 5799999999999986543 3356999999999999987 89999999999999863321 12222 33345
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
+. +++-+ +..+++++.||.|++|++ +++.+.++.+|..... ++...+ ++..+++++.|+++++|+.+
T Consensus 183 Rg--L~vl~-~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vY--sis~~~-~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 183 RG--LAVLD-DSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVY--SISMAL-SDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred ee--eEEec-CCCeEeecCCceEEEEec-cCceeeeeeccceEEE--EEEecC-CCCeEEEecCCceEEEeecC
Confidence 53 34454 446779999999999999 8899999998877665 444444 46899999999999999853
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-17 Score=106.03 Aligned_cols=145 Identities=21% Similarity=0.289 Sum_probs=111.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccc-------------
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT------------- 67 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~------------- 67 (154)
|++|+.||.+|+|+.+.... ......|...|.++.|+|||++|++-+.| ..++|+.+++...
T Consensus 159 latgg~dg~lRv~~~Ps~~t----~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~ 233 (398)
T KOG0771|consen 159 LATGGTDGTLRVWEWPSMLT----ILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFS 233 (398)
T ss_pred eeeccccceEEEEecCcchh----hhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhh
Confidence 57899999999999887765 55666899999999999999999999999 8999999876111
Q ss_pred -------------eeEeecCCCCc-----------------------eEeEEEEEEcCCCcEEEEEccCCeEEEecCCCc
Q 038702 68 -------------AMIHHNNQTGR-----------------------WISSFRAIWGWDDSCIFIGNMTRTVEVISPAQR 111 (154)
Q Consensus 68 -------------~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~ 111 (154)
.......+.+. .-...+++.+++|++++.|+.||.|-|++..+.
T Consensus 234 ~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~l 313 (398)
T KOG0771|consen 234 SCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSL 313 (398)
T ss_pred hceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEecee
Confidence 00000001100 001224577899999999999999999999999
Q ss_pred cceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 112 RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
+.++..+..|...+ +.+.|+| +.+++++-+.|..+.+.-
T Consensus 314 q~~~~vk~aH~~~V-T~ltF~P-dsr~~~svSs~~~~~v~~ 352 (398)
T KOG0771|consen 314 QRLQYVKEAHLGFV-TGLTFSP-DSRYLASVSSDNEAAVTK 352 (398)
T ss_pred eeeEeehhhheeee-eeEEEcC-CcCcccccccCCceeEEE
Confidence 98888876666644 8999999 788888888888776653
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.6e-17 Score=102.27 Aligned_cols=147 Identities=19% Similarity=0.250 Sum_probs=106.3
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee----cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccc---------
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL----SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT--------- 67 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~--------- 67 (154)
+++||.|.+|++|++++.. +...+ +|.+.|.++.|+++|.++++++.|.++++|++...+..
T Consensus 151 vls~SkD~svRlwnI~~~~-----Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~ 225 (385)
T KOG1034|consen 151 VLSASKDHSVRLWNIQTDV-----CVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITY 225 (385)
T ss_pred EEEecCCceEEEEeccCCe-----EEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhccc
Confidence 4789999999999999877 44444 69999999999999999999999999999998732100
Q ss_pred -------------eeEe-------ecC-------------------------------------CCCc------------
Q 038702 68 -------------AMIH-------HNN-------------------------------------QTGR------------ 78 (154)
Q Consensus 68 -------------~~~~-------~~~-------------------------------------~~~~------------ 78 (154)
..+. |.+ +...
T Consensus 226 ~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~ 305 (385)
T KOG1034|consen 226 SPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPM 305 (385)
T ss_pred CCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCc
Confidence 0000 000 0000
Q ss_pred -eEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccc--eeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 79 -WISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRS--VATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 79 -~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.+.-+..+|.|-++.|+.|...|.|.+||++..++ ..++..+.........+|+. ++.+|+....|++|.-||.
T Consensus 306 c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~-dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 306 CDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSR-DGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred cceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecc-cCcEEEEEeCCCcEEEEEe
Confidence 01112346677788899999999999999996654 33343333444446778887 8899999999999999984
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.7e-17 Score=98.41 Aligned_cols=133 Identities=17% Similarity=0.185 Sum_probs=104.0
Q ss_pred CCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEE
Q 038702 7 DGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAI 86 (154)
Q Consensus 7 d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (154)
-|.|.|......+. ...+..|.....||+|+|+|++|++|+.|-.+.+||+...-+...+....- .++ .+.
T Consensus 168 lG~v~ILsypsLkp----v~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldw---pVR--TlS 238 (313)
T KOG1407|consen 168 LGCVEILSYPSLKP----VQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDW---PVR--TLS 238 (313)
T ss_pred CceEEEEecccccc----ccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccC---ceE--EEE
Confidence 46777777765553 455558999999999999999999999999999999988776665543321 234 457
Q ss_pred EcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCC---------CeEEEee
Q 038702 87 WGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGG---------GQVYVWT 152 (154)
Q Consensus 87 ~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------~~i~~wd 152 (154)
|+.+|++|+++++|..|-|=++++|..+..++ ..+.. ..++|+| ...+|+-+..| |.++++-
T Consensus 239 FS~dg~~lASaSEDh~IDIA~vetGd~~~eI~--~~~~t-~tVAWHP-k~~LLAyA~ddk~~d~~reag~vKiFG 309 (313)
T KOG1407|consen 239 FSHDGRMLASASEDHFIDIAEVETGDRVWEIP--CEGPT-FTVAWHP-KRPLLAYACDDKDGDSNREAGTVKIFG 309 (313)
T ss_pred eccCcceeeccCccceEEeEecccCCeEEEee--ccCCc-eeEEecC-CCceeeEEecCCCCccccccceeEEec
Confidence 99999999999999999999999999988886 33344 6799999 66777766543 4667664
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-17 Score=109.22 Aligned_cols=144 Identities=12% Similarity=0.108 Sum_probs=116.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
+++|+..+.|+|||++.... ...+.+|.+.|+++.++-...++++++..|.|.+..+.++.....+.+... ..+
T Consensus 94 ~~sgG~~~~Vkiwdl~~kl~----hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sg--qsv 167 (673)
T KOG4378|consen 94 EISGGQSGCVKIWDLRAKLI----HRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSG--QSV 167 (673)
T ss_pred eeccCcCceeeehhhHHHHH----hhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCC--CeE
Confidence 46899999999999985442 333449999999999999999999999999999999999888877776532 223
Q ss_pred eEEEEEEcCCCc-EEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDS-CIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~-~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+ .+.|+|..+ +|.+++.+|.|.+||+....+...+...|.... ..++|+|.++.+|++.++|++|.+||+
T Consensus 168 R--ll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~-~gicfspsne~l~vsVG~Dkki~~yD~ 238 (673)
T KOG4378|consen 168 R--LLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPC-RGICFSPSNEALLVSVGYDKKINIYDI 238 (673)
T ss_pred E--EeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCc-CcceecCCccceEEEecccceEEEeec
Confidence 2 357888765 567789999999999998877766654443332 578999988899999999999999997
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.8e-17 Score=95.67 Aligned_cols=143 Identities=12% Similarity=0.052 Sum_probs=109.4
Q ss_pred ecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCC-C-ceEe
Q 038702 4 SSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQT-G-RWIS 81 (154)
Q Consensus 4 ~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~-~-~~~~ 81 (154)
|..|..|++=|-..++. ...+.+|.+.|.++ ++=++-.|++|+.|.+|+.||++-+.....+...... + ....
T Consensus 159 gagdc~iy~tdc~~g~~----~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessa 233 (350)
T KOG0641|consen 159 GAGDCKIYITDCGRGQG----FHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSA 233 (350)
T ss_pred CCCcceEEEeecCCCCc----ceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccce
Confidence 34455666666666654 45556999999886 3347889999999999999999977766554321111 1 1112
Q ss_pred EEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 82 SFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
+..++..|.|++|++|-.|..-.+||++.++.++.+..|...+ .++.|+| ...+++++++|.+|++=|+|
T Consensus 234 vaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadi--r~vrfsp-~a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 234 VAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADI--RCVRFSP-GAHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred eEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccce--eEEEeCC-CceEEEEecccceEEEeecc
Confidence 3356789999999999999999999999999999998766555 4689999 67899999999999998875
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-17 Score=107.17 Aligned_cols=145 Identities=20% Similarity=0.253 Sum_probs=107.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCC-----------------CceeecccCCeEEEEEcCC-CCEEEEeeCCCeEEEEecc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPE-----------------PTKVLSHKRAVHSAYFSPS-GSSLATTSFDDTIGIWSGV 62 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~-----------------~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~~~~~~ 62 (154)
+|.|..|..|.|||+.-.....|. .....+|++.|.++.|+.. .+.|++|+.|.+|++||+.
T Consensus 195 vAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~ 274 (463)
T KOG0270|consen 195 VAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVD 274 (463)
T ss_pred EEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcC
Confidence 477999999999998643321110 0112268999999999884 5688999999999999999
Q ss_pred ccccceeEeecCCCCceEeEEEEEEcCC-CcEEEEEccCCeEEEecCCCccce-eEEeCCCcCCcceEEEecCCCccEEE
Q 038702 63 NFENTAMIHHNNQTGRWISSFRAIWGWD-DSCIFIGNMTRTVEVISPAQRRSV-ATLQSPYISAIPCRFHAHPHQVGTLA 140 (154)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~ 140 (154)
++++...+.+.. ..++ ++.|+|. +.+|++|+.|+++.+.|.|..... ..++ -...+ -.++|+|.....++
T Consensus 275 ~g~p~~s~~~~~---k~Vq--~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~V--Ekv~w~~~se~~f~ 346 (463)
T KOG0270|consen 275 TGKPKSSITHHG---KKVQ--TLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEV--EKVAWDPHSENSFF 346 (463)
T ss_pred CCCcceehhhcC---Ccee--EEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccce--EEEEecCCCceeEE
Confidence 999888776433 2344 5678885 679999999999999999953322 2222 11122 46889998888999
Q ss_pred EEcCCCeEEEeeC
Q 038702 141 GATGGGQVYVWTS 153 (154)
Q Consensus 141 ~~~~d~~i~~wd~ 153 (154)
++..||+++-+|+
T Consensus 347 ~~tddG~v~~~D~ 359 (463)
T KOG0270|consen 347 VSTDDGTVYYFDI 359 (463)
T ss_pred EecCCceEEeeec
Confidence 9999999999986
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.5e-18 Score=105.65 Aligned_cols=114 Identities=11% Similarity=0.109 Sum_probs=89.4
Q ss_pred ccCCeEEEEEcCCC-CEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCC
Q 038702 31 HKRAVHSAYFSPSG-SSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPA 109 (154)
Q Consensus 31 ~~~~v~~~~~~~~~-~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~ 109 (154)
-.+.|.++.|+|.. ..|+++..|+.|.+||++.............. -.++|+|++--+.+++.|..++.||++
T Consensus 186 G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRT------N~IswnPeafnF~~a~ED~nlY~~DmR 259 (433)
T KOG0268|consen 186 GADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRT------NTICWNPEAFNFVAANEDHNLYTYDMR 259 (433)
T ss_pred CCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccc------cceecCccccceeeccccccceehhhh
Confidence 35678899999954 56777779999999999998877544332221 156899988889999999999999998
Q ss_pred Cc-cceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 110 QR-RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 110 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.. +++....+|...+ .++.|+| .|+-|++|++|.+|+||..
T Consensus 260 ~l~~p~~v~~dhvsAV--~dVdfsp-tG~EfvsgsyDksIRIf~~ 301 (433)
T KOG0268|consen 260 NLSRPLNVHKDHVSAV--MDVDFSP-TGQEFVSGSYDKSIRIFPV 301 (433)
T ss_pred hhcccchhhcccceeE--EEeccCC-CcchhccccccceEEEeec
Confidence 65 4556666554443 6899999 8899999999999999975
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-17 Score=110.42 Aligned_cols=150 Identities=18% Similarity=0.200 Sum_probs=99.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccce-------eE-e
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTA-------MI-H 71 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~-------~~-~ 71 (154)
|++++.|.++++||+...+... ....++|.+.|.+++|.| +...|++|+.||.+.|||++-..... .. .
T Consensus 115 lVsasGDsT~r~Wdvk~s~l~G--~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~ 192 (720)
T KOG0321|consen 115 LVSASGDSTIRPWDVKTSRLVG--GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGR 192 (720)
T ss_pred EEEccCCceeeeeeeccceeec--ceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhcc
Confidence 5789999999999998876421 123559999999999999 56789999999999999998443110 00 0
Q ss_pred ecC-----------------CCCceEeEEEEEEcCCCcEEEEEcc-CCeEEEecCCCccceeEE--------eCCC-cCC
Q 038702 72 HNN-----------------QTGRWISSFRAIWGWDDSCIFIGNM-TRTVEVISPAQRRSVATL--------QSPY-ISA 124 (154)
Q Consensus 72 ~~~-----------------~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~i~~~~~~~~~~~~--------~~~~-~~~ 124 (154)
+.. ........+.+.+..|...|++++. |+.|++||++........ ..+. ...
T Consensus 193 ~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~ 272 (720)
T KOG0321|consen 193 HNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSV 272 (720)
T ss_pred ccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCccccee
Confidence 000 0111111223556678899999887 999999999854332221 1111 111
Q ss_pred cceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 125 IPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 125 ~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
-...+..+. .|.+|.+.+.|+.|++||+
T Consensus 273 G~~nL~lDs-sGt~L~AsCtD~sIy~ynm 300 (720)
T KOG0321|consen 273 GQVNLILDS-SGTYLFASCTDNSIYFYNM 300 (720)
T ss_pred eeEEEEecC-CCCeEEEEecCCcEEEEec
Confidence 123455555 4566666666999999996
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-16 Score=102.91 Aligned_cols=149 Identities=16% Similarity=0.141 Sum_probs=111.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCC-EEEEeeCCCeEEEEeccccccceeEe--------
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGS-SLATTSFDDTIGIWSGVNFENTAMIH-------- 71 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~~~~~~~~~~~~~~~-------- 71 (154)
|++|+.|+++++|.+....... ...+.=...+|.+.+|.|+|. .+++++.-..+..||+++.+...+..
T Consensus 228 llvaG~d~~lrifqvDGk~N~~--lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~ 305 (514)
T KOG2055|consen 228 LLVAGLDGTLRIFQVDGKVNPK--LQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKS 305 (514)
T ss_pred EEEecCCCcEEEEEecCccChh--heeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccch
Confidence 4789999999999998654321 223334567899999999998 89999999999999998765332111
Q ss_pred -------ecC------CCCceE------------------eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCC
Q 038702 72 -------HNN------QTGRWI------------------SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSP 120 (154)
Q Consensus 72 -------~~~------~~~~~~------------------~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 120 (154)
|.. .....+ .+-..+|+.+++.|+.++.+|.|.+||+++..++..+..
T Consensus 306 ~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D- 384 (514)
T KOG2055|consen 306 MERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD- 384 (514)
T ss_pred hheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee-
Confidence 000 000001 111357889999999999999999999999999888874
Q ss_pred CcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 121 YISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
...+...+++.++ ++.+|++|+..|.|.|||.
T Consensus 385 ~G~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~ 416 (514)
T KOG2055|consen 385 DGSVHGTSLCISL-NGSYLATGSDSGIVNIYDG 416 (514)
T ss_pred cCccceeeeeecC-CCceEEeccCcceEEEecc
Confidence 3444457788888 7889999999999999985
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-17 Score=111.24 Aligned_cols=145 Identities=17% Similarity=0.249 Sum_probs=106.9
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|+++++|-+|++||++..+. ...+.+|.+.|..++|+|+|+++++.+.||++++|+.+..+.+..-+......
T Consensus 693 La~asyd~Ti~lWDl~~~~~----~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgt--- 765 (1012)
T KOG1445|consen 693 LAVASYDSTIELWDLANAKL----YSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGT--- 765 (1012)
T ss_pred hhhhhccceeeeeehhhhhh----hheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccC---
Confidence 57899999999999998876 67778999999999999999999999999999999999887765443322222
Q ss_pred eEEEEEEcCCCcEEEEEccCC----eEEEecCCCc--cceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTR----TVEVISPAQR--RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~----~i~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+.-++.|.-+|+++++.+.|. .|.+||..+- ..+.+..-...... .--.++++.+-+|++|-.|..|++|.+
T Consensus 766 RgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~-LvP~YD~Ds~~lfltGKGD~~v~~yEv 843 (1012)
T KOG1445|consen 766 RGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSP-LVPHYDYDSNVLFLTGKGDRFVNMYEV 843 (1012)
T ss_pred cceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCcc-ccccccCCCceEEEecCCCceEEEEEe
Confidence 223556888999998887664 5888987643 33433321111111 223455645567889999999999975
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.7e-16 Score=97.75 Aligned_cols=136 Identities=15% Similarity=0.184 Sum_probs=104.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
+++|+.||.|+++|+.+++ ...+-.|..+|+|+.+++....+++|+.|++|++||.+.......+.. +..+
T Consensus 68 ~~~G~~dg~vr~~Dln~~~-----~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~----~kkV 138 (323)
T KOG1036|consen 68 IVTGGLDGQVRRYDLNTGN-----EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ----GKKV 138 (323)
T ss_pred EEEeccCceEEEEEecCCc-----ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc----CceE
Confidence 3689999999999999876 455568999999999999889999999999999999987333322221 1133
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEE
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYV 150 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~ 150 (154)
.+ .+-.+..|+.|+.+..+.+||++......+.+...-.....+++..| +++-++.++-||.|.+
T Consensus 139 y~----~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~p-n~eGy~~sSieGRVav 203 (323)
T KOG1036|consen 139 YC----MDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVP-NGEGYVVSSIEGRVAV 203 (323)
T ss_pred EE----EeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEec-CCCceEEEeecceEEE
Confidence 32 34568899999999999999999876555444333334446788888 6677888899999876
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.7e-16 Score=94.71 Aligned_cols=112 Identities=14% Similarity=0.252 Sum_probs=82.5
Q ss_pred cccCCeEEEEEcCCCCEEEEe--eCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccC---CeEE
Q 038702 30 SHKRAVHSAYFSPSGSSLATT--SFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMT---RTVE 104 (154)
Q Consensus 30 ~~~~~v~~~~~~~~~~~l~~~--~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---~~i~ 104 (154)
...++|.+++|+|+|+.|+.. ..+..+.+||++ .+....+... ... .+.|+|+|+++++++.+ |.|.
T Consensus 57 ~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~~-----~~n--~i~wsP~G~~l~~~g~~n~~G~l~ 128 (194)
T PF08662_consen 57 KKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGTQ-----PRN--TISWSPDGRFLVLAGFGNLNGDLE 128 (194)
T ss_pred cCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeecCC-----Cce--EEEECCCCCEEEEEEccCCCcEEE
Confidence 445679999999999987654 457799999996 2222222211 112 46899999999998744 6799
Q ss_pred EecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcC------CCeEEEeeCC
Q 038702 105 VISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATG------GGQVYVWTSD 154 (154)
Q Consensus 105 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------d~~i~~wd~~ 154 (154)
+||.++.+.+..... .. +..++|+| ++++|+++.. |..++||+.+
T Consensus 129 ~wd~~~~~~i~~~~~--~~--~t~~~WsP-dGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 129 FWDVRKKKKISTFEH--SD--ATDVEWSP-DGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EEECCCCEEeecccc--Cc--EEEEEEcC-CCCEEEEEEeccceeccccEEEEEec
Confidence 999998888776652 22 36789999 8899988864 7889999863
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.8e-17 Score=109.41 Aligned_cols=148 Identities=12% Similarity=0.119 Sum_probs=114.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCC--CEEEEeeCCCeEEEEeccccccceeEeecCCCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSG--SSLATTSFDDTIGIWSGVNFENTAMIHHNNQTG 77 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~--~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~ 77 (154)
||+++.|..|+|+|+..+-. +.+.. +|...|+++.|..+| ..+++++.|..+..--.+.......+......-
T Consensus 519 LASasrdRlIHV~Dv~rny~----l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~ 594 (1080)
T KOG1408|consen 519 LASASRDRLIHVYDVKRNYD----LVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTL 594 (1080)
T ss_pred hhhccCCceEEEEecccccc----hhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecccccccc
Confidence 58899999999999976543 44444 999999999998877 688999999877543333333333333222222
Q ss_pred ceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcC-CcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 78 RWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYIS-AIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.....+.++..|..+++++++.|++|+||++.+++..+.+++.+.. .....+..+| .+.|+++...|+++.++|.
T Consensus 595 ~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df 670 (1080)
T KOG1408|consen 595 SKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDF 670 (1080)
T ss_pred ccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECC-CccEEEEeecCCceEEEEe
Confidence 3345667889999999999999999999999999999999975432 3347889999 7899999999999999985
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.1e-18 Score=118.28 Aligned_cols=145 Identities=14% Similarity=0.224 Sum_probs=108.5
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCce--eecccCCeEEEEEcCC-CCEEEEeeCCCeEEEEeccccccceeEeecCCCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTK--VLSHKRAVHSAYFSPS-GSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTG 77 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~ 77 (154)
||+|+.||.|.|||+...+. +.. ...-.+.|.+++|+.. .+.|++++.+|++.+||++..+....+.....
T Consensus 132 LASGa~~geI~iWDlnn~~t----P~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~-- 205 (1049)
T KOG0307|consen 132 LASGADDGEILIWDLNKPET----PFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPG-- 205 (1049)
T ss_pred eeccCCCCcEEEeccCCcCC----CCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCC--
Confidence 68999999999999987543 222 2245678999999884 56788899999999999998866544332111
Q ss_pred ceEeEEEEEEcCCCc-EEEEEccCC---eEEEecCCC-ccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 78 RWISSFRAIWGWDDS-CIFIGNMTR---TVEVISPAQ-RRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~-~l~~~~~d~---~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
...+-.+.|+|+.. .+++++.|. .|.+||+|. ..+++++.+|..++ .++.|++.+..++++++.|+.|.+||
T Consensus 206 -~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~Gi--lslsWc~~D~~lllSsgkD~~ii~wN 282 (1049)
T KOG0307|consen 206 -RMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGI--LSLSWCPQDPRLLLSSGKDNRIICWN 282 (1049)
T ss_pred -ccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccce--eeeccCCCCchhhhcccCCCCeeEec
Confidence 12344678999864 455555443 699999984 45677777776666 48899998889999999999999998
Q ss_pred CC
Q 038702 153 SD 154 (154)
Q Consensus 153 ~~ 154 (154)
..
T Consensus 283 ~~ 284 (1049)
T KOG0307|consen 283 PN 284 (1049)
T ss_pred CC
Confidence 63
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.5e-16 Score=104.05 Aligned_cols=143 Identities=17% Similarity=0.246 Sum_probs=110.5
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee-c-ccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL-S-HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (154)
||.+-.||.|.+|+++.+-. ....+ + ..+.|-+++|++ +..|.+.+.+|+|..||+.+.++.........
T Consensus 40 lAvsRt~g~IEiwN~~~~w~----~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg--- 111 (691)
T KOG2048|consen 40 LAVSRTDGNIEIWNLSNNWF----LEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGG--- 111 (691)
T ss_pred eeeeccCCcEEEEccCCCce----eeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEecCCCc---
Confidence 56788899999999987542 22222 4 456899999995 55677888999999999999887765543322
Q ss_pred eEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 79 WISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
...+++-+|.+..++.|+.||.+..++...++......-..+.....++.|+| ++..+++|+.||.|++||..
T Consensus 112 --~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~-~~~~i~~Gs~Dg~Iriwd~~ 184 (691)
T KOG2048|consen 112 --AIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP-TGTKIAGGSIDGVIRIWDVK 184 (691)
T ss_pred --ceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecC-CccEEEecccCceEEEEEcC
Confidence 45577889999999999999988888888777654443334444457899999 77889999999999999973
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.2e-17 Score=99.03 Aligned_cols=144 Identities=15% Similarity=0.194 Sum_probs=106.1
Q ss_pred eecCCCcEEEEEccCCCCCC--CCCceeecccCCeEEEEEcC--CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCc
Q 038702 3 TSSTDGTACIWDLRSMATDK--PEPTKVLSHKRAVHSAYFSP--SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGR 78 (154)
Q Consensus 3 ~~~~d~~v~vw~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (154)
++-.|..|.+|++....... .......++....++-+|+| +++.+++. .|+++..||+++......+.. .++.
T Consensus 139 asm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~d--AHgq 215 (370)
T KOG1007|consen 139 ASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIED--AHGQ 215 (370)
T ss_pred EEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhh--hhcc
Confidence 34558889999998765411 00111124667788999999 77887775 688999999998766544432 2333
Q ss_pred eEeEEEEEEcCCCc-EEEEEccCCeEEEecCCC-ccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 79 WISSFRAIWGWDDS-CIFIGNMTRTVEVISPAQ-RRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 79 ~~~~~~~~~~~~~~-~l~~~~~d~~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.+ ..+.|+|+.+ +|++++.||.|||||.+. ..+++++.+|...+ +++.|+|...+++++|+.|..|.+|..
T Consensus 216 ~v--rdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWv--W~VRfn~~hdqLiLs~~SDs~V~Lsca 288 (370)
T KOG1007|consen 216 RV--RDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWV--WAVRFNPEHDQLILSGGSDSAVNLSCA 288 (370)
T ss_pred ee--eeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEE--EEEEecCccceEEEecCCCceeEEEec
Confidence 33 3567899765 789999999999999985 56788887776554 688999988899999999999999864
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.2e-17 Score=111.63 Aligned_cols=137 Identities=17% Similarity=0.219 Sum_probs=113.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe-ecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~ 79 (154)
+++++.+|.+++||+.+.. ......-...+.++..+.....++.+..|-.|+++|..+.+....+. |.+ .
T Consensus 508 ~vsa~~~Gilkfw~f~~k~-----l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~n----r 578 (910)
T KOG1539|consen 508 LVSAGADGILKFWDFKKKV-----LKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGN----R 578 (910)
T ss_pred EEEccCcceEEEEecCCcc-----eeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcccc----c
Confidence 4789999999999998755 44445667788899999988999999999999999999877765543 444 2
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCC-CeEEEee
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGG-GQVYVWT 152 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-~~i~~wd 152 (154)
+ -.+.|+|||++|++++.|++||+||+.++.++-.+.- ...+..+.++| ++++|++...| .-|++|-
T Consensus 579 i--td~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v---d~~~~sls~SP-ngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 579 I--TDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV---DSPCTSLSFSP-NGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred e--eeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec---CCcceeeEECC-CCCEEEEEEecCceEEEEE
Confidence 3 3668999999999999999999999999998877752 23446899999 89999999988 6799994
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.4e-16 Score=107.18 Aligned_cols=142 Identities=18% Similarity=0.189 Sum_probs=116.6
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe-ecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~ 79 (154)
|++|+.+++|.+|.+..+.. ...+....-++++++|+-+|++++.|+.|-.|++.++.+......+. |..
T Consensus 69 f~~~s~~~tv~~y~fps~~~----~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~a----- 139 (933)
T KOG1274|consen 69 FLTGSEQNTVLRYKFPSGEE----DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDA----- 139 (933)
T ss_pred eEEeeccceEEEeeCCCCCc----cceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCC-----
Confidence 57899999999999988774 33344778899999999999999999999999999998876655443 333
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCC------CcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSP------YISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.++++.|+|++.+|++.+.||.|++||+.++.+..++.+- ....++..++|+| ++..|+....|+.|++|+.
T Consensus 140 -pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~P-k~g~la~~~~d~~Vkvy~r 217 (933)
T KOG1274|consen 140 -PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHP-KGGTLAVPPVDNTVKVYSR 217 (933)
T ss_pred -ceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecC-CCCeEEeeccCCeEEEEcc
Confidence 3557789999999999999999999999999887777642 1244567899999 7677888889999999875
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-15 Score=96.94 Aligned_cols=138 Identities=14% Similarity=0.102 Sum_probs=98.3
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEE-EEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSL-ATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
+++++.|+.+++||+.+++ ......+...+.+++|+|+++.+ ++++.++.+++||..+.+....+.... .
T Consensus 4 ~~s~~~d~~v~~~d~~t~~-----~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~----~ 74 (300)
T TIGR03866 4 YVSNEKDNTISVIDTATLE-----VTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP----D 74 (300)
T ss_pred EEEecCCCEEEEEECCCCc-----eEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC----C
Confidence 4688999999999998765 33334333446789999999876 566789999999998876544332111 1
Q ss_pred EeEEEEEEcCCCcEEEEE-ccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCC-eEEEeeC
Q 038702 80 ISSFRAIWGWDDSCIFIG-NMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGG-QVYVWTS 153 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~-~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~~wd~ 153 (154)
. ..++|+|+++.++++ ..++.+++||+++.+.+..+.... ....++++| ++.++++++.++ .+.+||.
T Consensus 75 ~--~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~---~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~ 144 (300)
T TIGR03866 75 P--ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGV---EPEGMAVSP-DGKIVVNTSETTNMAHFIDT 144 (300)
T ss_pred c--cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCC---CcceEEECC-CCCEEEEEecCCCeEEEEeC
Confidence 1 245789999877655 568999999999887777665322 125688999 778888887765 4666775
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.6e-15 Score=93.59 Aligned_cols=97 Identities=22% Similarity=0.266 Sum_probs=83.0
Q ss_pred CCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCe-EEEEeccccccceeEeecCCCCceEeEEE
Q 038702 6 TDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDT-IGIWSGVNFENTAMIHHNNQTGRWISSFR 84 (154)
Q Consensus 6 ~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
..|.|.+||..+.+. ...+..|.+++.+++|+++|.+||+++..|+ ||++.+.+++....++.... .+..++
T Consensus 151 t~GdV~l~d~~nl~~----v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~---~~~IyS 223 (391)
T KOG2110|consen 151 TSGDVVLFDTINLQP----VNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY---PVSIYS 223 (391)
T ss_pred CCceEEEEEccccee----eeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce---eeEEEE
Confidence 368899999987664 4445599999999999999999999999987 78999988888777765432 567788
Q ss_pred EEEcCCCcEEEEEccCCeEEEecCC
Q 038702 85 AIWGWDDSCIFIGNMTRTVEVISPA 109 (154)
Q Consensus 85 ~~~~~~~~~l~~~~~d~~i~i~~~~ 109 (154)
++|+|++++|++.+..++|++|.+.
T Consensus 224 L~Fs~ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 224 LSFSPDSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred EEECCCCCeEEEecCCCeEEEEEec
Confidence 9999999999999999999999875
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-16 Score=96.85 Aligned_cols=139 Identities=14% Similarity=0.146 Sum_probs=104.3
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
|++|.+||.|..||++++.. ..... .|...|+.++++|+..+|++++.|.+-++||.++.+....+....+
T Consensus 162 ii~Ghe~G~is~~da~~g~~----~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~P---- 233 (327)
T KOG0643|consen 162 IIAGHEDGSISIYDARTGKE----LVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERP---- 233 (327)
T ss_pred EEEecCCCcEEEEEcccCce----eeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeeccc----
Confidence 57899999999999998764 44443 7899999999999999999999999999999999888777654433
Q ss_pred EeEEEEEEcCCCcEEEEEccCCe--E------------EEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRT--V------------EVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGG 145 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~--i------------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 145 (154)
+. +++++|-...++.|+-... | |+|++-..+.+..+++|..+. .+++++| ++...++|+.|
T Consensus 234 vN--~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPI--NsvAfhP-dGksYsSGGED 308 (327)
T KOG0643|consen 234 VN--TAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPI--NSVAFHP-DGKSYSSGGED 308 (327)
T ss_pred cc--ceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCc--ceeEECC-CCcccccCCCC
Confidence 22 4567887666655542222 2 222222334556677776555 5899999 89999999999
Q ss_pred CeEEEee
Q 038702 146 GQVYVWT 152 (154)
Q Consensus 146 ~~i~~wd 152 (154)
|.|++.-
T Consensus 309 G~VR~h~ 315 (327)
T KOG0643|consen 309 GYVRLHH 315 (327)
T ss_pred ceEEEEE
Confidence 9999864
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-16 Score=99.68 Aligned_cols=105 Identities=13% Similarity=0.136 Sum_probs=89.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
+|+|+.-|.|+|.|+.+++. .....+|...|..+.+.| ..+++++++.|.+|++|++++..+..+++-...+ .
T Consensus 108 la~~G~~GvIrVid~~~~~~----~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egH--r 181 (385)
T KOG1034|consen 108 LAAGGYLGVIRVIDVVSGQC----SKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGH--R 181 (385)
T ss_pred EEeecceeEEEEEecchhhh----ccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccc--c
Confidence 46778899999999998875 566679999999999999 4589999999999999999999988877633222 2
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCc
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQR 111 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~ 111 (154)
-.++++.|++++.++++++.|..+++|++...
T Consensus 182 deVLSvD~~~~gd~i~ScGmDhslk~W~l~~~ 213 (385)
T KOG1034|consen 182 DEVLSVDFSLDGDRIASCGMDHSLKLWRLNVK 213 (385)
T ss_pred CcEEEEEEcCCCCeeeccCCcceEEEEecChh
Confidence 34678899999999999999999999999843
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6e-16 Score=96.43 Aligned_cols=141 Identities=20% Similarity=0.247 Sum_probs=104.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
+++++.|.+..+||++++.. ...+.+|....+.++-+|..+++++++.|.+.++||.+..-....... .+..
T Consensus 287 ~vTaSWDRTAnlwDVEtge~----v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQ--GHtd-- 358 (481)
T KOG0300|consen 287 MVTASWDRTANLWDVETGEV----VNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQ--GHTD-- 358 (481)
T ss_pred eeeeeccccceeeeeccCce----eccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeec--cccc--
Confidence 47899999999999999884 444559999999999999999999999999999999985433222211 1222
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCc-cceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQR-RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.+.++.|.. +..+++|+.|.+|++||++.. .++.+++... .. ..++.+. ...+++.--.++.|++||+.
T Consensus 359 tVTS~vF~~-dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS-~~--NRvavs~-g~~iIAiPhDNRqvRlfDln 428 (481)
T KOG0300|consen 359 TVTSVVFNT-DDRVVSGSDDRTVKVWDLRNMRSPLATIRTDS-PA--NRVAVSK-GHPIIAIPHDNRQVRLFDLN 428 (481)
T ss_pred ceeEEEEec-CCceeecCCCceEEEeeeccccCcceeeecCC-cc--ceeEeec-CCceEEeccCCceEEEEecC
Confidence 233556764 456789999999999999975 4667776332 22 3456655 44577777788899999973
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.4e-15 Score=94.17 Aligned_cols=139 Identities=12% Similarity=0.183 Sum_probs=107.4
Q ss_pred CCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCCCEEEEe--eCCCeEEEEeccccccceeEe-ecCCCCceEeE
Q 038702 7 DGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATT--SFDDTIGIWSGVNFENTAMIH-HNNQTGRWISS 82 (154)
Q Consensus 7 d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~--~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (154)
...|+|||+++.+.-. .+... .+...+.++.+++.+.+++.- ...|.|.+||..+.+....+. |.. .+.
T Consensus 105 ee~IyIydI~~MklLh--TI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~----~lA- 177 (391)
T KOG2110|consen 105 EESIYIYDIKDMKLLH--TIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKG----PLA- 177 (391)
T ss_pred cccEEEEecccceeeh--hhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCC----cee-
Confidence 3459999999877310 11112 456667777777777788763 347899999999887766554 333 233
Q ss_pred EEEEEcCCCcEEEEEccCCe-EEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 83 FRAIWGWDDSCIFIGNMTRT-VEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 83 ~~~~~~~~~~~l~~~~~d~~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.++|+++|.+|||++..|+ ||++.+.+|+.+.+++.....+...+++|+| ++.+|++.+..++|.++.++
T Consensus 178 -alafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~-ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 178 -ALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSP-DSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred -EEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECC-CCCeEEEecCCCeEEEEEec
Confidence 5689999999999999996 7999999999999998766666668899999 88999999999999999874
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.6e-16 Score=95.57 Aligned_cols=121 Identities=20% Similarity=0.238 Sum_probs=88.9
Q ss_pred ecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccce--------eEeec---------------------------
Q 038702 29 LSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTA--------MIHHN--------------------------- 73 (154)
Q Consensus 29 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~--------~~~~~--------------------------- 73 (154)
.+|.+.|++++|+.+|.+|++++.|++|++|+++...... .+.|.
T Consensus 83 KgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~ 162 (420)
T KOG2096|consen 83 KGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKL 162 (420)
T ss_pred hccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEe
Confidence 4899999999999999999999999999999987532110 00000
Q ss_pred -------------------CCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCC
Q 038702 74 -------------------NQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPH 134 (154)
Q Consensus 74 -------------------~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (154)
-+..+.+.++..-....+.++++++.|..|.+|+++ |+.+..+........ ..+.+|
T Consensus 163 ~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~--~aavSP- 238 (420)
T KOG2096|consen 163 VKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNY--DAAVSP- 238 (420)
T ss_pred eecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccccc--ceeeCC-
Confidence 000111122222334567899999999999999999 888888875544443 567888
Q ss_pred CccEEEEEcCCCeEEEeeC
Q 038702 135 QVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 135 ~~~~l~~~~~d~~i~~wd~ 153 (154)
+++++++++..-.|++|.+
T Consensus 239 ~GRFia~~gFTpDVkVwE~ 257 (420)
T KOG2096|consen 239 DGRFIAVSGFTPDVKVWEP 257 (420)
T ss_pred CCcEEEEecCCCCceEEEE
Confidence 8999999999999999975
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.7e-16 Score=103.78 Aligned_cols=139 Identities=15% Similarity=0.219 Sum_probs=100.2
Q ss_pred cEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE-eecCCCCceEeEEEEEE
Q 038702 9 TACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI-HHNNQTGRWISSFRAIW 87 (154)
Q Consensus 9 ~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 87 (154)
.|++|+...... ...+.+|.-.|+.++|||++++|++.+.|.++.+|........... .....+.+. +..+.|
T Consensus 553 vI~lw~t~~W~~----~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRI--IWdcsW 626 (764)
T KOG1063|consen 553 VIRLWNTANWLQ----VQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRI--IWDCSW 626 (764)
T ss_pred EEEEEeccchhh----hheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceE--EEEccc
Confidence 488999887664 4567799999999999999999999999999999998554333221 122233333 347789
Q ss_pred cCCCcEEEEEccCCeEEEecCCCc--cceeEEeCCCcCCcceEEEecCC----CccEEEEEcCCCeEEEeeC
Q 038702 88 GWDDSCIFIGNMTRTVEVISPAQR--RSVATLQSPYISAIPCRFHAHPH----QVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 88 ~~~~~~l~~~~~d~~i~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~d~~i~~wd~ 153 (154)
+|++.+++|++.|.+|++|..... +.+..+....-....+++++.|. ....++.|-..|.|.+|..
T Consensus 627 ~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~ 698 (764)
T KOG1063|consen 627 SPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRR 698 (764)
T ss_pred CcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEec
Confidence 999999999999999999998866 44433221111112245565543 3337888889999999974
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.6e-16 Score=105.39 Aligned_cols=116 Identities=14% Similarity=0.180 Sum_probs=100.9
Q ss_pred cCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCC-CCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCC
Q 038702 32 KRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQ-TGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQ 110 (154)
Q Consensus 32 ~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 110 (154)
+..++.++..|...++++++.|..|+||++++++....+..... .+. .+.+...|.|.|+++.+.|.++.++|..+
T Consensus 596 ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~---lIKv~lDPSgiY~atScsdktl~~~Df~s 672 (1080)
T KOG1408|consen 596 KTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGD---LIKVILDPSGIYLATSCSDKTLCFVDFVS 672 (1080)
T ss_pred cceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCc---eEEEEECCCccEEEEeecCCceEEEEecc
Confidence 45789999999999999999999999999999998877754332 243 33567899999999999999999999999
Q ss_pred ccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 111 RRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
++++.++.+|...+ ..+.|.+ +...|++.+.||.|.+|.+
T Consensus 673 gEcvA~m~GHsE~V--TG~kF~n-DCkHlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 673 GECVAQMTGHSEAV--TGVKFLN-DCKHLISVSGDGCIFVWKL 712 (1080)
T ss_pred chhhhhhcCcchhe--eeeeecc-cchhheeecCCceEEEEEC
Confidence 99999999887665 5788998 7899999999999999986
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-15 Score=93.75 Aligned_cols=139 Identities=19% Similarity=0.264 Sum_probs=103.6
Q ss_pred eecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCCC-EEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 3 TSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGS-SLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 3 ~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
....|+++..||+++.+. ...+. .|...|..+.|+|+-+ .|++++.||.|++||.+..+.+....+ .+.+++
T Consensus 188 ~tt~d~tl~~~D~RT~~~----~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~--~HsHWv 261 (370)
T KOG1007|consen 188 ATTSDSTLQFWDLRTMKK----NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP--GHSHWV 261 (370)
T ss_pred EEeCCCcEEEEEccchhh----hcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC--CCceEE
Confidence 345689999999998775 44444 7999999999999765 678899999999999998776544332 344555
Q ss_pred eEEEEEEcCC-CcEEEEEccCCeEEEecCCCcc-----------------------------ceeEEeCCCcCCcceEEE
Q 038702 81 SSFRAIWGWD-DSCIFIGNMTRTVEVISPAQRR-----------------------------SVATLQSPYISAIPCRFH 130 (154)
Q Consensus 81 ~~~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 130 (154)
. .+.|+|. .+++++++.|..|.+|...+-. .+.++..|...+ .+++
T Consensus 262 W--~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSV--Y~~a 337 (370)
T KOG1007|consen 262 W--AVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSV--YALA 337 (370)
T ss_pred E--EEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccce--EEEe
Confidence 4 6678885 5688999999999999643110 122333344444 4789
Q ss_pred ecCCCccEEEEEcCCCeEEEe
Q 038702 131 AHPHQVGTLAGATGGGQVYVW 151 (154)
Q Consensus 131 ~~~~~~~~l~~~~~d~~i~~w 151 (154)
|+..++-+|++-++||.+.|=
T Consensus 338 WSsadPWiFASLSYDGRviIs 358 (370)
T KOG1007|consen 338 WSSADPWIFASLSYDGRVIIS 358 (370)
T ss_pred eccCCCeeEEEeccCceEEee
Confidence 998899999999999998763
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-15 Score=102.01 Aligned_cols=150 Identities=16% Similarity=0.203 Sum_probs=103.9
Q ss_pred CeeecC-CCcEEEEEccCCCCCCC----CCceeecc---cCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEee
Q 038702 1 MATSST-DGTACIWDLRSMATDKP----EPTKVLSH---KRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHH 72 (154)
Q Consensus 1 l~~~~~-d~~v~vw~~~~~~~~~~----~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~ 72 (154)
||+++. |+.|+|||+++...... ....+.-| .-.+.++.....|.+|.+.+.|++|.+|++......-...+
T Consensus 232 laSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~ 311 (720)
T KOG0321|consen 232 LASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEF 311 (720)
T ss_pred eeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhc
Confidence 466666 99999999987643111 11111223 34577888888899999988999999999987554322221
Q ss_pred cCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccc-eeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEe
Q 038702 73 NNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRS-VATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 151 (154)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w 151 (154)
......... ..-..+|++.++++|+.|...++|.+...+. ...+.+|...+ ..++|.|..-.-+++++.|-.+++|
T Consensus 312 sg~~~~sf~-vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eV--t~V~w~pS~~t~v~TcSdD~~~kiW 388 (720)
T KOG0321|consen 312 SGKLNSSFY-VKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREV--TTVRWLPSATTPVATCSDDFRVKIW 388 (720)
T ss_pred cCcccceee-eeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEE--EEEeeccccCCCceeeccCcceEEE
Confidence 111111111 1335689999999999999999999987654 34445565555 5678888666678899999999999
Q ss_pred eC
Q 038702 152 TS 153 (154)
Q Consensus 152 d~ 153 (154)
++
T Consensus 389 ~l 390 (720)
T KOG0321|consen 389 RL 390 (720)
T ss_pred ec
Confidence 97
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.3e-15 Score=91.91 Aligned_cols=152 Identities=16% Similarity=0.169 Sum_probs=98.8
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC--CCCEEEEeeCCCeEEEEecccccc----ceeEeecC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP--SGSSLATTSFDDTIGIWSGVNFEN----TAMIHHNN 74 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~~~~~~~~~~----~~~~~~~~ 74 (154)
+|||+.|++|+|||.++.............|.+.|..+.|.+ -|+.+++++.|+++.||.-..... ........
T Consensus 28 mAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~tt 107 (361)
T KOG2445|consen 28 MATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTT 107 (361)
T ss_pred eeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEE
Confidence 589999999999998665543333344558999999999966 589999999999999998632111 11111100
Q ss_pred CCCceEeEEEEEEcCC--CcEEEEEccCCeEEEecCCCc------cceeEEe---C--CCcCCcceEEEecCC--CccEE
Q 038702 75 QTGRWISSFRAIWGWD--DSCIFIGNMTRTVEVISPAQR------RSVATLQ---S--PYISAIPCRFHAHPH--QVGTL 139 (154)
Q Consensus 75 ~~~~~~~~~~~~~~~~--~~~l~~~~~d~~i~i~~~~~~------~~~~~~~---~--~~~~~~~~~~~~~~~--~~~~l 139 (154)
.......++.+.|.|. |-.+++++.||.+|||+.... .+...+. . ......+.++.|+|. ...+|
T Consensus 108 l~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~i 187 (361)
T KOG2445|consen 108 LVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLI 187 (361)
T ss_pred eecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceE
Confidence 1111124557788885 679999999999999986533 3333332 0 011222356778764 33578
Q ss_pred EEEcCC-----CeEEEee
Q 038702 140 AGATGG-----GQVYVWT 152 (154)
Q Consensus 140 ~~~~~d-----~~i~~wd 152 (154)
+.|+.+ +.++||.
T Consensus 188 Avgs~e~a~~~~~~~Iye 205 (361)
T KOG2445|consen 188 AVGSDEDAPHLNKVKIYE 205 (361)
T ss_pred EEEcccCCccccceEEEE
Confidence 887765 4677775
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.4e-15 Score=96.23 Aligned_cols=137 Identities=11% Similarity=0.131 Sum_probs=105.8
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
++|++.|+.+++|+ ..+ +.-...-.++..|+.|+|.| .++.|+..|...+.|.++.....+... +..+
T Consensus 383 ~~T~gqdk~v~lW~--~~k-----~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d----~~~l 450 (626)
T KOG2106|consen 383 LLTCGQDKHVRLWN--DHK-----LEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD----NEQL 450 (626)
T ss_pred eeeccCcceEEEcc--CCc-----eeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec----CCce
Confidence 58999999999999 222 33334567789999999999 999999999999999998544443322 2223
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCcc-ceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRR-SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
. .++|+|+|.+|+.|+.|+.|++|.+.... .......++. .....+.|++ ++++|.+-+.|-.|-.|..
T Consensus 451 s--~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g-s~ithLDwS~-Ds~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 451 S--VVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG-SPITHLDWSS-DSQFLVSNSGDYEILYWKP 520 (626)
T ss_pred E--EEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecC-ceeEEeeecC-CCceEEeccCceEEEEEcc
Confidence 3 46899999999999999999999987544 3333333334 4447899999 8899999999999999954
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.4e-16 Score=100.33 Aligned_cols=121 Identities=18% Similarity=0.299 Sum_probs=95.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (154)
|.+++++|.|.+||+....+ ..... .|..+...++|+| +..+|++.+.|..|.+||.+.......+....+
T Consensus 180 L~~asd~G~VtlwDv~g~sp----~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~P--- 252 (673)
T KOG4378|consen 180 LSIASDKGAVTLWDVQGMSP----IFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHP--- 252 (673)
T ss_pred eEeeccCCeEEEEeccCCCc----ccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCC---
Confidence 46799999999999987664 33333 8999999999999 556888999999999999997665544432222
Q ss_pred eEeEEEEEEcCCCcEEEEEccCCeEEEecCCC-ccceeEEeCCCcCCcceEEEecC
Q 038702 79 WISSFRAIWGWDDSCIFIGNMTRTVEVISPAQ-RRSVATLQSPYISAIPCRFHAHP 133 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 133 (154)
.. .++|+++|.+|+.|...|.|..||++. ..++.++..|...+. +++|.|
T Consensus 253 -ls--tvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt--~vafq~ 303 (673)
T KOG4378|consen 253 -LS--TVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVT--RVAFQP 303 (673)
T ss_pred -cc--eeeecCCceEEEeecCCceEEEEecccCCCCceEeeeccccee--EEEeee
Confidence 12 578999999999999999999999995 567777877776654 566665
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.4e-15 Score=96.17 Aligned_cols=150 Identities=15% Similarity=0.196 Sum_probs=116.5
Q ss_pred CeeecCCCcEEEEEccCCCC-CCCCCceee--cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCC
Q 038702 1 MATSSTDGTACIWDLRSMAT-DKPEPTKVL--SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTG 77 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~-~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~ 77 (154)
|++|++|..+++|++...-. +.++++.+. .|...|.|++|....+++++|..+++|...|+++.+...++.+....+
T Consensus 71 L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~ 150 (609)
T KOG4227|consen 71 LASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRG 150 (609)
T ss_pred EeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCccc
Confidence 68999999999999865211 122355555 466899999999999999999999999999999999888877665433
Q ss_pred ceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCcc-ceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 78 RWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRR-SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.++.+..+|..+.+++.+.++.|.+||.+..+ ....+.....+.....+-|+|..+.+|++.+..+-+.+||+
T Consensus 151 ---~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~ 224 (609)
T KOG4227|consen 151 ---DVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDR 224 (609)
T ss_pred ---ceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceee
Confidence 34566778999999999999999999998654 33222212222233577899999999999999999999996
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.2e-15 Score=99.39 Aligned_cols=150 Identities=17% Similarity=0.225 Sum_probs=110.9
Q ss_pred CeeecCCCcEEEEEccCCCCC----CC--CCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecC
Q 038702 1 MATSSTDGTACIWDLRSMATD----KP--EPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNN 74 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~----~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~ 74 (154)
+.+|+.||+|+.|++..+... .+ ....+.||.+.|+.+++++...+|++++.||+++.|+....... .+....
T Consensus 359 ~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~-~f~~~~ 437 (577)
T KOG0642|consen 359 CYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPC-TFGEPK 437 (577)
T ss_pred EEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCcc-ccCCcc
Confidence 368999999999987633211 11 11234599999999999999999999999999999987643320 000000
Q ss_pred --------------------------------------------CCCce---EeEEEEEEcCCCcEEEEEccCCeEEEec
Q 038702 75 --------------------------------------------QTGRW---ISSFRAIWGWDDSCIFIGNMTRTVEVIS 107 (154)
Q Consensus 75 --------------------------------------------~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~i~~ 107 (154)
..+.. -..-.+.++|...+.+++..|+.|+++|
T Consensus 438 e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~d 517 (577)
T KOG0642|consen 438 EHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFD 517 (577)
T ss_pred ccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccc
Confidence 00000 0111356788889999999999999999
Q ss_pred CCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 108 PAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
..+++.+.....|...+ .++++.| ++-+|++++.||.+++|.++
T Consensus 518 n~~~~~l~s~~a~~~sv--tslai~~-ng~~l~s~s~d~sv~l~kld 561 (577)
T KOG0642|consen 518 NKTGKILHSMVAHKDSV--TSLAIDP-NGPYLMSGSHDGSVRLWKLD 561 (577)
T ss_pred ccccccchheeecccee--cceeecC-CCceEEeecCCceeehhhcc
Confidence 99999999888776555 4788888 88999999999999999873
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.6e-15 Score=95.63 Aligned_cols=143 Identities=12% Similarity=0.142 Sum_probs=106.6
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|+..+..|-|.+....+++ .+..+.-.+.|..++|+.+++.|++++.+|.|.+||++...+...+.... .+
T Consensus 318 ia~~G~~G~I~lLhakT~e-----li~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G----~v 388 (514)
T KOG2055|consen 318 IAIAGNNGHIHLLHAKTKE-----LITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDG----SV 388 (514)
T ss_pred EEEcccCceEEeehhhhhh-----hhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecC----cc
Confidence 3567778888888877765 56666778899999999999999999999999999999886554443322 23
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCC------ccceeEEe------------C-------------------C---
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQ------RRSVATLQ------------S-------------------P--- 120 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~------~~~~~~~~------------~-------------------~--- 120 (154)
...+++.++++.|||+|+..|.|.|||..+ ++++..+. . |
T Consensus 389 ~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS 468 (514)
T KOG2055|consen 389 HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPS 468 (514)
T ss_pred ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccc
Confidence 344667789999999999999999999541 22221110 0 0
Q ss_pred -----------CcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 121 -----------YISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 121 -----------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
..-..+.+++|+| .+.+++.|..+|.+.+|.+
T Consensus 469 ~TVFsNfP~~n~~vg~vtc~aFSP-~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 469 CTVFSNFPTSNTKVGHVTCMAFSP-NSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred eeeeccCCCCCCcccceEEEEecC-CCceEEeecCCCceeeEee
Confidence 0112235799999 7889999999999999976
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.8e-15 Score=92.83 Aligned_cols=145 Identities=20% Similarity=0.276 Sum_probs=106.5
Q ss_pred eecCCCcEEEEEccCCCCCCCCCce----eecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEe-ecCCC
Q 038702 3 TSSTDGTACIWDLRSMATDKPEPTK----VLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQT 76 (154)
Q Consensus 3 ~~~~d~~v~vw~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~ 76 (154)
.++....|+++|+.......+.... .++..+.|.+++|+| +...++.++...++-|+.-...+...... |..
T Consensus 174 faGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~g-- 251 (406)
T KOG2919|consen 174 FAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGG-- 251 (406)
T ss_pred eecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCC--
Confidence 4677889999999443322211111 124478899999999 55689999999999999887777766554 222
Q ss_pred CceEeEEEEEEcCCCcEEEEEc-cCCeEEEecCCC-ccceeEEeCCCc-CCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 77 GRWISSFRAIWGWDDSCIFIGN-MTRTVEVISPAQ-RRSVATLQSPYI-SAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~-~d~~i~i~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
-+..++|.++|+.|++|+ .|-.|-.||++. ..++..+..|.. .....-+...| ++++|++|+.||.|++||+
T Consensus 252 ----GvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~-~~~~LasG~tdG~V~vwdl 326 (406)
T KOG2919|consen 252 ----GVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDP-KGEILASGDTDGSVRVWDL 326 (406)
T ss_pred ----CeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCC-CCceeeccCCCccEEEEec
Confidence 234678999999999988 466899999995 566667766544 33334567778 8899999999999999998
Q ss_pred C
Q 038702 154 D 154 (154)
Q Consensus 154 ~ 154 (154)
+
T Consensus 327 k 327 (406)
T KOG2919|consen 327 K 327 (406)
T ss_pred C
Confidence 4
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.3e-16 Score=100.94 Aligned_cols=94 Identities=24% Similarity=0.194 Sum_probs=76.3
Q ss_pred cCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCc
Q 038702 32 KRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQR 111 (154)
Q Consensus 32 ~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~ 111 (154)
.+.|...+|+|||++|++.+.||.++|+|..+.+........-. ..++++|+|||+|+++|++|--|.||.+...
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFG-----GLLCvcWSPDGKyIvtGGEDDLVtVwSf~er 364 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFG-----GLLCVCWSPDGKYIVTGGEDDLVTVWSFEER 364 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhcc-----ceEEEEEcCCccEEEecCCcceEEEEEeccc
Confidence 45888999999999999999999999999998876644432111 3457899999999999999999999999999
Q ss_pred cceeEEeCCCcCCcceEEEec
Q 038702 112 RSVATLQSPYISAIPCRFHAH 132 (154)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~ 132 (154)
+.+..-.+|...+. .++|+
T Consensus 365 RVVARGqGHkSWVs--~VaFD 383 (636)
T KOG2394|consen 365 RVVARGQGHKSWVS--VVAFD 383 (636)
T ss_pred eEEEecccccccee--eEeec
Confidence 88887777766554 45554
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-15 Score=102.90 Aligned_cols=121 Identities=21% Similarity=0.285 Sum_probs=92.8
Q ss_pred CceeecccCCeEEEEEcCCCCEEEEeeCCC-----eEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEcc
Q 038702 25 PTKVLSHKRAVHSAYFSPSGSSLATTSFDD-----TIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNM 99 (154)
Q Consensus 25 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 99 (154)
..++++|...|++++.+|+++++++++... -|++|+..+......+. ++...+.+++|+||+++|++.+.
T Consensus 518 v~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~-----~HsLTVT~l~FSpdg~~LLsvsR 592 (764)
T KOG1063|consen 518 VHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELE-----GHSLTVTRLAFSPDGRYLLSVSR 592 (764)
T ss_pred hHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheec-----ccceEEEEEEECCCCcEEEEeec
Confidence 345679999999999999999999998754 48999988765554221 22235568899999999999999
Q ss_pred CCeEEEecCCCccc----eeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 100 TRTVEVISPAQRRS----VATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 100 d~~i~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
|+++.+|....... ....+. |. .+.++..|+| ++.+|+|++.|.+|++|..
T Consensus 593 DRt~sl~~~~~~~~~e~~fa~~k~-Ht-RIIWdcsW~p-de~~FaTaSRDK~VkVW~~ 647 (764)
T KOG1063|consen 593 DRTVSLYEVQEDIKDEFRFACLKA-HT-RIIWDCSWSP-DEKYFATASRDKKVKVWEE 647 (764)
T ss_pred CceEEeeeeecccchhhhhccccc-cc-eEEEEcccCc-ccceeEEecCCceEEEEec
Confidence 99999998753321 112332 33 3348889999 8888999999999999975
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.67 E-value=4e-14 Score=90.65 Aligned_cols=138 Identities=15% Similarity=0.029 Sum_probs=95.0
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEe-eCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATT-SFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
++++.++.|++||..+++. ...+..+ ..+..+.|+|+++.++++ ..++.+++||+++.+....+....
T Consensus 47 ~~~~~~~~v~~~d~~~~~~----~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~------ 115 (300)
T TIGR03866 47 VCASDSDTIQVIDLATGEV----IGTLPSG-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGV------ 115 (300)
T ss_pred EEECCCCeEEEEECCCCcE----EEeccCC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCC------
Confidence 4677889999999987652 2222233 335678999999877654 568999999998765544333211
Q ss_pred eEEEEEEcCCCcEEEEEccCC-eEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEE-EEEcCCCeEEEeeCC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTR-TVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTL-AGATGGGQVYVWTSD 154 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~d~~i~~wd~~ 154 (154)
....++|+|++.+++++..++ .+.+||.++++....+.... . ...++|+| ++..| +++..++.|++||++
T Consensus 116 ~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~--~~~~~~s~-dg~~l~~~~~~~~~v~i~d~~ 187 (300)
T TIGR03866 116 EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQ-R--PRFAEFTA-DGKELWVSSEIGGTVSVIDVA 187 (300)
T ss_pred CcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCC-C--ccEEEECC-CCCEEEEEcCCCCEEEEEEcC
Confidence 112468999999999888765 57788998877665544222 1 24578898 66666 455579999999973
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.2e-15 Score=92.95 Aligned_cols=108 Identities=12% Similarity=0.122 Sum_probs=82.9
Q ss_pred cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCC
Q 038702 30 SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPA 109 (154)
Q Consensus 30 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~ 109 (154)
.+.. ..|+.|++.|.+|++|+.||.|.+||+.+......+. .+... +.+++|+++|+.|++++.|..+.+||+.
T Consensus 22 d~~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~ls---aH~~p--i~sl~WS~dgr~LltsS~D~si~lwDl~ 95 (405)
T KOG1273|consen 22 DNPL-AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLS---AHVRP--ITSLCWSRDGRKLLTSSRDWSIKLWDLL 95 (405)
T ss_pred cCCc-cceEEeccCcceeeeeccCCcEEEEEccccchhhhhh---ccccc--eeEEEecCCCCEeeeecCCceeEEEecc
Confidence 4444 7899999999999999999999999999877554442 12222 3467999999999999999999999999
Q ss_pred CccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCC
Q 038702 110 QRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGG 146 (154)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 146 (154)
.|.+++.+.- .. .+ +...|+|.+.+..+..-.+.
T Consensus 96 ~gs~l~rirf-~s-pv-~~~q~hp~k~n~~va~~~~~ 129 (405)
T KOG1273|consen 96 KGSPLKRIRF-DS-PV-WGAQWHPRKRNKCVATIMEE 129 (405)
T ss_pred CCCceeEEEc-cC-cc-ceeeeccccCCeEEEEEecC
Confidence 9999988873 22 22 56788887666555544433
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.8e-15 Score=104.08 Aligned_cols=140 Identities=16% Similarity=0.160 Sum_probs=112.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
+++|+.-+.|.+|+....+. +..+.+|.+.|.++.++.+|+++++.|.|.++++|++++.+..... .-++..
T Consensus 148 i~~gsv~~~iivW~~~~dn~----p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~----~fgHsa 219 (967)
T KOG0974|consen 148 IASGSVFGEIIVWKPHEDNK----PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCT----GFGHSA 219 (967)
T ss_pred EEeccccccEEEEeccccCC----cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcc----cccccc
Confidence 36788889999999984443 4467799999999999999999999999999999999998776521 122234
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+.+.+++.|. ++++++.|-+.++|+.. ++.+..+..|....+ ..++..+ +.-.+++++.|+.+++||+
T Consensus 220 Rvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~i-w~~~~~~-~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 220 RVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGI-WKIAVPI-GVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred eeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcce-eEEEEcC-CceEEEeeccCcchhhhhh
Confidence 6678888887 99999999999999654 444457776666555 7788887 6678899999999999986
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-14 Score=98.95 Aligned_cols=141 Identities=11% Similarity=0.109 Sum_probs=115.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
++.|+..|.+.+|++++++. ...+.++...|+++.=+|--..++.|..+|+|.+++++..+....+.+...
T Consensus 175 IvvGs~~G~lql~Nvrt~K~----v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g----- 245 (910)
T KOG1539|consen 175 IVVGSSQGRLQLWNVRTGKV----VYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWG----- 245 (910)
T ss_pred EEEeecCCcEEEEEeccCcE----EEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEcccc-----
Confidence 46789999999999999885 556668899999999999999999999999999999999999888877522
Q ss_pred eEEEEEEcCCCc-EEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 81 SSFRAIWGWDDS-CIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 81 ~~~~~~~~~~~~-~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
.+..+.|..||+ .+++|+..|.+.+||++..+.+..+...+.+.+ ....+.| ....+++.+.|..+++|=
T Consensus 246 ~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv-~~~~fl~-~epVl~ta~~DnSlk~~v 316 (910)
T KOG1539|consen 246 RVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSV-TGATFLP-GEPVLVTAGADNSLKVWV 316 (910)
T ss_pred ceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCc-ccceecC-CCceEeeccCCCceeEEE
Confidence 345678999987 556667779999999999888877774343333 3566777 567899999999999884
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3e-15 Score=98.83 Aligned_cols=129 Identities=17% Similarity=0.228 Sum_probs=89.3
Q ss_pred CeeecCCCcEEEEEccCC---CCCCCC-CceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccc-------ee
Q 038702 1 MATSSTDGTACIWDLRSM---ATDKPE-PTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT-------AM 69 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~---~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~-------~~ 69 (154)
|++|+.||++++|+++.. ...... ...+.+|.++|.|+++.+++..+++|+.||+|+.|++.....+ ..
T Consensus 309 lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl 388 (577)
T KOG0642|consen 309 LITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVL 388 (577)
T ss_pred EEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchh
Confidence 579999999999999432 111222 3345599999999999999999999999999999987632221 11
Q ss_pred EeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEec
Q 038702 70 IHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAH 132 (154)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (154)
..+...+.. .+..+++++....|++++.||++|.|+.....+ .++........+..+.+.
T Consensus 389 ~~~l~Ghtd--avw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ 448 (577)
T KOG0642|consen 389 SGTLLGHTD--AVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRT 448 (577)
T ss_pred ccceecccc--ceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeec
Confidence 122222222 333567888888899999999999999876655 344433334444455544
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.2e-14 Score=89.56 Aligned_cols=148 Identities=17% Similarity=0.226 Sum_probs=105.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccC---CeEEEEEcCCCCEEEEeeCCCeEEEEeccc-cccceeEe--ecC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKR---AVHSAYFSPSGSSLATTSFDDTIGIWSGVN-FENTAMIH--HNN 74 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~-~~~~~~~~--~~~ 74 (154)
+++.+.+.-|++||..+++... ......|.+ ...+++|+|+|.+|++| ....|+++|+.. ++.-.... ...
T Consensus 126 ~a~ssr~~PIh~wdaftG~lra--Sy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~ 202 (406)
T KOG2919|consen 126 FAVSSRDQPIHLWDAFTGKLRA--SYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKG 202 (406)
T ss_pred eeeccccCceeeeecccccccc--chhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcc
Confidence 3667888999999999887522 223335554 44589999999999887 677899999943 33221111 111
Q ss_pred CCCceEeEEEEEEcCCC-cEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEc-CCCeEEEee
Q 038702 75 QTGRWISSFRAIWGWDD-SCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT-GGGQVYVWT 152 (154)
Q Consensus 75 ~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~wd 152 (154)
..+..-...+.+|+|-. ..++.++....+-||.-..+.++..+.+|..++ +.++|++ +++.|.+|. .|-.|-.||
T Consensus 203 k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGv--ThL~~~e-dGn~lfsGaRk~dkIl~WD 279 (406)
T KOG2919|consen 203 KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGV--THLQWCE-DGNKLFSGARKDDKILCWD 279 (406)
T ss_pred cccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCe--eeEEecc-CcCeecccccCCCeEEEEe
Confidence 11111122245789854 589999999999999888888998888776666 5899999 788888887 578999999
Q ss_pred CC
Q 038702 153 SD 154 (154)
Q Consensus 153 ~~ 154 (154)
+.
T Consensus 280 iR 281 (406)
T KOG2919|consen 280 IR 281 (406)
T ss_pred eh
Confidence 73
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.3e-14 Score=96.58 Aligned_cols=151 Identities=17% Similarity=0.206 Sum_probs=102.8
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCcee--ecccCCeEEEEEcCCC--CEEEEeeCCCeEEEEeccccccceeE------
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKV--LSHKRAVHSAYFSPSG--SSLATTSFDDTIGIWSGVNFENTAMI------ 70 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~--~~l~~~~~d~~v~~~~~~~~~~~~~~------ 70 (154)
++.|..+|+|.+||++......+..... ..|..++..+.|..+. .-|++++.||.|..|+++....+...
T Consensus 258 l~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~ 337 (555)
T KOG1587|consen 258 LAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESK 337 (555)
T ss_pred EEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccc
Confidence 5789999999999999876533333333 3799999999997744 45999999999999988743211000
Q ss_pred e----------------------------------------------------ecCCCCceEeEEEEEEcCCCcEEEEEc
Q 038702 71 H----------------------------------------------------HNNQTGRWISSFRAIWGWDDSCIFIGN 98 (154)
Q Consensus 71 ~----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~ 98 (154)
. +.....+......+.++|=+..++..+
T Consensus 338 ~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~ 417 (555)
T KOG1587|consen 338 KHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSV 417 (555)
T ss_pred cccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeee
Confidence 0 000000011122345666555444444
Q ss_pred cCCeEEEecCC-CccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 99 MTRTVEVISPA-QRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 99 ~d~~i~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.|.+++||... ...++..+..+... ..+++|+|..+..|+++..||.|.+||+
T Consensus 418 gDW~vriWs~~~~~~Pl~~~~~~~~~--v~~vaWSptrpavF~~~d~~G~l~iWDL 471 (555)
T KOG1587|consen 418 GDWTVRIWSEDVIASPLLSLDSSPDY--VTDVAWSPTRPAVFATVDGDGNLDIWDL 471 (555)
T ss_pred ccceeEeccccCCCCcchhhhhccce--eeeeEEcCcCceEEEEEcCCCceehhhh
Confidence 49999999987 55666666543333 3689999999999999999999999998
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.3e-14 Score=100.36 Aligned_cols=148 Identities=7% Similarity=0.104 Sum_probs=101.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (154)
|+++++-..|+|||...... ...+. +....|+++.-+. .|+.+++|..||+|++||.+............++..
T Consensus 1180 Ll~tGd~r~IRIWDa~~E~~----~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~ 1255 (1387)
T KOG1517|consen 1180 LLVTGDVRSIRIWDAHKEQV----VADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHND 1255 (1387)
T ss_pred EEecCCeeEEEEEeccccee----EeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCC
Confidence 34556678999999987653 33333 5566777776654 579999999999999999998766443332223333
Q ss_pred eEeEEEEEEcCCCc-EEEEEccCCeEEEecCCCccc--eeEEeCCCcCC-cceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 79 WISSFRAIWGWDDS-CIFIGNMTRTVEVISPAQRRS--VATLQSPYISA-IPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 79 ~~~~~~~~~~~~~~-~l~~~~~d~~i~i~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
...++.+.+.+.|- .|++|+.+|.|++||++.... ..++..|.... ..+++..|+ +..++++|+. +.|+||+++
T Consensus 1256 ~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~-hapiiAsGs~-q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1256 VEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHE-HAPIIASGSA-QLIKIYSLS 1333 (1387)
T ss_pred cccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeecc-CCCeeeecCc-ceEEEEecC
Confidence 32234556666554 599999999999999997422 22333333222 236788888 7789999988 999999974
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.7e-15 Score=96.80 Aligned_cols=122 Identities=15% Similarity=0.216 Sum_probs=92.5
Q ss_pred ceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCC--CcEEEEEccCCeE
Q 038702 26 TKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWD--DSCIFIGNMTRTV 103 (154)
Q Consensus 26 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~d~~i 103 (154)
..+.+|.+.|.+++|+.+|.+|++|+.|-.+.|||.-..+....+ .+++...++++.|-|. .+.+++|..|..|
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI----~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI----STGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee----ecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 345699999999999999999999999999999998755554443 2334446788888884 6789999999999
Q ss_pred EEecCCCcc----------ceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 104 EVISPAQRR----------SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 104 ~i~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
++||+...+ ....+..|...+ -.++..|..+..+-+++.||+|+-+|+
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rV--Kria~~p~~PhtfwsasEDGtirQyDi 177 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRV--KRIATAPNGPHTFWSASEDGTIRQYDI 177 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhh--hheecCCCCCceEEEecCCcceeeecc
Confidence 999998422 222222333333 245666756689999999999999997
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-13 Score=83.31 Aligned_cols=145 Identities=12% Similarity=0.139 Sum_probs=97.9
Q ss_pred CeeecCCCcEEEEEccCCC---CCCC---CCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccc-------
Q 038702 1 MATSSTDGTACIWDLRSMA---TDKP---EPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT------- 67 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~---~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~------- 67 (154)
|++|+.+|+|.+..+.+.. ...+ ......+|.++|+.++|. ..+|++++ ||.|+-|..+.....
T Consensus 25 l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lw 101 (325)
T KOG0649|consen 25 LFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLW 101 (325)
T ss_pred EEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhh
Confidence 5789999999999886421 1111 122234899999999996 45666664 599999987654321
Q ss_pred eeEe--ecCC-CCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcC
Q 038702 68 AMIH--HNNQ-TGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATG 144 (154)
Q Consensus 68 ~~~~--~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 144 (154)
.... +... .-..+. .+...|...-+++++-|+.++-||+++|+..+++++|..... ++.--. ....+++|+.
T Consensus 102 e~~~P~~~~~~evPeIN--am~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH--~vv~R~-~~~qilsG~E 176 (325)
T KOG0649|consen 102 EVKIPMQVDAVEVPEIN--AMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVH--SVVGRN-ANGQILSGAE 176 (325)
T ss_pred hhcCccccCcccCCccc--eeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceee--eeeecc-cCcceeecCC
Confidence 0000 1100 001122 234567766677777899999999999999999999987776 333322 3457889999
Q ss_pred CCeEEEeeC
Q 038702 145 GGQVYVWTS 153 (154)
Q Consensus 145 d~~i~~wd~ 153 (154)
||++++||+
T Consensus 177 DGtvRvWd~ 185 (325)
T KOG0649|consen 177 DGTVRVWDT 185 (325)
T ss_pred CccEEEEec
Confidence 999999997
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.9e-13 Score=82.50 Aligned_cols=138 Identities=16% Similarity=0.203 Sum_probs=97.4
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCC-----
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQ----- 75 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~----- 75 (154)
+++++.|+.++-||+++++. ...+.+|++.|.++.-......+++|++||++++||.++.+....+.....
T Consensus 129 i~~AgGD~~~y~~dlE~G~i----~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lR 204 (325)
T KOG0649|consen 129 ILFAGGDGVIYQVDLEDGRI----QREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLR 204 (325)
T ss_pred EEEecCCeEEEEEEecCCEE----EEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcC
Confidence 35667899999999999884 455559999999999866666889999999999999999988766643221
Q ss_pred --CCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 76 --TGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 76 --~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.+.++. +...+...+++|+ ...+.+|.+++.++...+.-+. ....+.|. ...+++++..+.+.-|.+
T Consensus 205 p~~g~wig----ala~~edWlvCGg-Gp~lslwhLrsse~t~vfpipa---~v~~v~F~---~d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 205 PDWGKWIG----ALAVNEDWLVCGG-GPKLSLWHLRSSESTCVFPIPA---RVHLVDFV---DDCVLIGGEGNHVQSYTL 273 (325)
T ss_pred cccCceeE----EEeccCceEEecC-CCceeEEeccCCCceEEEeccc---ceeEeeee---cceEEEeccccceeeeee
Confidence 222333 3344566776655 5679999999998887776321 11334453 356666776666666643
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.2e-13 Score=97.38 Aligned_cols=151 Identities=15% Similarity=0.242 Sum_probs=106.4
Q ss_pred CeeecCCCcEEEEEccCCCCCC--CCCceee-cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE----ee-
Q 038702 1 MATSSTDGTACIWDLRSMATDK--PEPTKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI----HH- 72 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~--~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~----~~- 72 (154)
+++||.||+|++|+.++..... .+..... ...+.+.++.+.+.++.++.++.||.|++.++......... ..
T Consensus 1064 FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~ 1143 (1431)
T KOG1240|consen 1064 FVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIP 1143 (1431)
T ss_pred EEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecc
Confidence 5899999999999998744321 1111222 25678999999999999999999999999999873322111 11
Q ss_pred -cCCCCceEeEEEEEEc-CCCc-EEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEE
Q 038702 73 -NNQTGRWISSFRAIWG-WDDS-CIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVY 149 (154)
Q Consensus 73 -~~~~~~~~~~~~~~~~-~~~~-~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 149 (154)
....+. +..+. +|. ..+. .++.+..-+.|..||++....+..++.........+++.+| .++.++.|+..|.+-
T Consensus 1144 n~~~~g~-vv~m~-a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp-~~~WlviGts~G~l~ 1220 (1431)
T KOG1240|consen 1144 NLKKDGV-VVSMH-AFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDP-WCNWLVIGTSRGQLV 1220 (1431)
T ss_pred cccCCCc-eEEee-cccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecC-CceEEEEecCCceEE
Confidence 111222 22221 222 2333 78888889999999999887776666544445557899999 778999999999999
Q ss_pred EeeCC
Q 038702 150 VWTSD 154 (154)
Q Consensus 150 ~wd~~ 154 (154)
+||+.
T Consensus 1221 lWDLR 1225 (1431)
T KOG1240|consen 1221 LWDLR 1225 (1431)
T ss_pred EEEee
Confidence 99973
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-12 Score=81.51 Aligned_cols=102 Identities=17% Similarity=0.199 Sum_probs=84.0
Q ss_pred ecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCe-EEEEeccccccceeEeecCCCCceEeE
Q 038702 4 SSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDT-IGIWSGVNFENTAMIHHNNQTGRWISS 82 (154)
Q Consensus 4 ~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (154)
|-.-|+|+|-|+...... .+..+..|.+.|.|++.+.+|..+|++|..|+ |+|||.++++....+...... ...
T Consensus 155 g~k~GqvQi~dL~~~~~~--~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~---A~i 229 (346)
T KOG2111|consen 155 GFKTGQVQIVDLASTKPN--APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDR---ADI 229 (346)
T ss_pred CCccceEEEEEhhhcCcC--CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCch---heE
Confidence 345588999998776542 13445599999999999999999999999987 899999999988877654432 245
Q ss_pred EEEEEcCCCcEEEEEccCCeEEEecCCC
Q 038702 83 FRAIWGWDDSCIFIGNMTRTVEVISPAQ 110 (154)
Q Consensus 83 ~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 110 (154)
++++|+|+..+|++++..|+++||.++.
T Consensus 230 y~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 230 YCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 6789999999999999999999998874
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.9e-13 Score=84.78 Aligned_cols=120 Identities=23% Similarity=0.282 Sum_probs=85.6
Q ss_pred cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE-eecCCCCceEeEEEEEEcC--CCcEEEEEccCCeEEEe
Q 038702 30 SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI-HHNNQTGRWISSFRAIWGW--DDSCIFIGNMTRTVEVI 106 (154)
Q Consensus 30 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~d~~i~i~ 106 (154)
+|.+-|.++.|.+.|+.+++++.|++++|||.+.....-.. .+-..++. ...++.|.+ -|+.+++++.|+++.||
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~--Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDG--SIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCC--cEEEEEecCccccceEEEEecCCceeee
Confidence 89999999999999999999999999999998654433211 11112221 345677865 38999999999999999
Q ss_pred cCC---------CccceeEEeCCCcCCcceEEEecCC-CccEEEEEcCCCeEEEeeC
Q 038702 107 SPA---------QRRSVATLQSPYISAIPCRFHAHPH-QVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 107 ~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~~wd~ 153 (154)
.-. ......++......+ .++.|.|. .+-.+++++.||.++||+.
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV--~DV~FaP~hlGLklA~~~aDG~lRIYEA 143 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSV--TDVKFAPKHLGLKLAAASADGILRIYEA 143 (361)
T ss_pred eecccccccccceeEEEEEeecCCcce--eEEEecchhcceEEEEeccCcEEEEEec
Confidence 752 122233444333333 57778774 3456899999999999974
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-13 Score=89.93 Aligned_cols=113 Identities=14% Similarity=0.165 Sum_probs=87.0
Q ss_pred ecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecC
Q 038702 29 LSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISP 108 (154)
Q Consensus 29 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~ 108 (154)
.+|.+....++.+|+.+++++++.|+.+++|+ ..+......... .+-++.|+|.| .++.|...|...+.|.
T Consensus 365 ~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d------~~~~~~fhpsg-~va~Gt~~G~w~V~d~ 435 (626)
T KOG2106|consen 365 QGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIED------PAECADFHPSG-VVAVGTATGRWFVLDT 435 (626)
T ss_pred EecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecC------ceeEeeccCcc-eEEEeeccceEEEEec
Confidence 46889999999999999999999999999999 222221111111 12256899999 9999999999999999
Q ss_pred CCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 109 AQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
++...+..-. . ...+ ..++++| ++.+|+.|+.|+.|++|-++
T Consensus 436 e~~~lv~~~~-d-~~~l-s~v~ysp-~G~~lAvgs~d~~iyiy~Vs 477 (626)
T KOG2106|consen 436 ETQDLVTIHT-D-NEQL-SVVRYSP-DGAFLAVGSHDNHIYIYRVS 477 (626)
T ss_pred ccceeEEEEe-c-CCce-EEEEEcC-CCCEEEEecCCCeEEEEEEC
Confidence 9855544333 2 3333 6789999 89999999999999999763
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-13 Score=86.92 Aligned_cols=146 Identities=16% Similarity=0.130 Sum_probs=108.2
Q ss_pred eeecCC--CcEEEEEccCCCCCCC---CCceee--cccCCeEEEEEcCC--CCEEEEeeCCCeEEEEeccccccceeEee
Q 038702 2 ATSSTD--GTACIWDLRSMATDKP---EPTKVL--SHKRAVHSAYFSPS--GSSLATTSFDDTIGIWSGVNFENTAMIHH 72 (154)
Q Consensus 2 ~~~~~d--~~v~vw~~~~~~~~~~---~~~~~~--~~~~~v~~~~~~~~--~~~l~~~~~d~~v~~~~~~~~~~~~~~~~ 72 (154)
++|+.. ..+++||+...++... .+.... .-+-.++++.|-+. ...|++++.-+.+++||.+.++.+.....
T Consensus 165 a~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd 244 (412)
T KOG3881|consen 165 ATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFD 244 (412)
T ss_pred ecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEec
Confidence 568888 7899999987532100 001111 23445678899886 78999999999999999998877765443
Q ss_pred cCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeE-EeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEe
Q 038702 73 NNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVAT-LQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 151 (154)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w 151 (154)
..+.+ +. ++...|+++++++|..-+.+..||++.++.+.. +.+...++ .++..+| ...++++++-|+.++|+
T Consensus 245 ~~E~~--is--~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsi--rsih~hp-~~~~las~GLDRyvRIh 317 (412)
T KOG3881|consen 245 FLENP--IS--STGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSI--RSIHCHP-THPVLASCGLDRYVRIH 317 (412)
T ss_pred cccCc--ce--eeeecCCCcEEEEecccchhheecccCceeeccccCCccCCc--ceEEEcC-CCceEEeeccceeEEEe
Confidence 33322 22 445689999999999999999999999988776 55443333 5778888 66899999999999999
Q ss_pred eCC
Q 038702 152 TSD 154 (154)
Q Consensus 152 d~~ 154 (154)
|++
T Consensus 318 D~k 320 (412)
T KOG3881|consen 318 DIK 320 (412)
T ss_pred ecc
Confidence 975
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-13 Score=86.30 Aligned_cols=144 Identities=12% Similarity=0.151 Sum_probs=99.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeeccc-CCeEEEEEcCCCCEEEEeeC----CCeEEEEeccccccc-eeEeecC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHK-RAVHSAYFSPSGSSLATTSF----DDTIGIWSGVNFENT-AMIHHNN 74 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~----d~~v~~~~~~~~~~~-~~~~~~~ 74 (154)
+.+|+.||+|++||++...... .....++. .+..+++.+...+.+++|+. +-.|.+||++..+.+ ..+..
T Consensus 87 v~s~ssDG~Vr~wD~Rs~~e~a--~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e-- 162 (376)
T KOG1188|consen 87 VISCSSDGTVRLWDIRSQAESA--RISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNE-- 162 (376)
T ss_pred eEEeccCCeEEEEEeecchhhh--heeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhh--
Confidence 4689999999999999866421 22223454 56777777778888888865 668999999987763 22221
Q ss_pred CCCceEeEEEEEEcCC-CcEEEEEccCCeEEEecCCCcc----ceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEE
Q 038702 75 QTGRWISSFRAIWGWD-DSCIFIGNMTRTVEVISPAQRR----SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVY 149 (154)
Q Consensus 75 ~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 149 (154)
.+..-+. +++|+|+ .++|++|+.||.|.+||++... ++.++. + ...+ ..+.|....-..|.+-+...+..
T Consensus 163 SH~DDVT--~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN-~-~sSI-~~igw~~~~ykrI~clTH~Etf~ 237 (376)
T KOG1188|consen 163 SHNDDVT--QLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN-H-GSSI-HLIGWLSKKYKRIMCLTHMETFA 237 (376)
T ss_pred hccCcce--eEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhc-c-ccee-eeeeeecCCcceEEEEEccCcee
Confidence 1222233 5679995 6799999999999999998542 233333 2 2222 46778774444677778888999
Q ss_pred EeeC
Q 038702 150 VWTS 153 (154)
Q Consensus 150 ~wd~ 153 (154)
+|++
T Consensus 238 ~~el 241 (376)
T KOG1188|consen 238 IYEL 241 (376)
T ss_pred EEEc
Confidence 9987
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.3e-13 Score=87.77 Aligned_cols=136 Identities=24% Similarity=0.308 Sum_probs=102.0
Q ss_pred cCCCcEEEEEccC-CCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeC-CCeEEEEeccccccceeEeecCCCCceEeE
Q 038702 5 STDGTACIWDLRS-MATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSF-DDTIGIWSGVNFENTAMIHHNNQTGRWISS 82 (154)
Q Consensus 5 ~~d~~v~vw~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (154)
..|+.+++|+... ... ......|...|..++|+|++..+++++. |+.+++|+............ +.. .+
T Consensus 131 ~~d~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~v 201 (466)
T COG2319 131 SLDGTVKLWDLSTPGKL----IRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG---HTD--PV 201 (466)
T ss_pred CCCccEEEEEecCCCeE----EEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeecc---CCC--ce
Confidence 4489999999987 332 4555689999999999999998888885 99999999988444433322 122 23
Q ss_pred EEEEEcCCCc-EEEEEccCCeEEEecCCCcccee-EEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 83 FRAIWGWDDS-CIFIGNMTRTVEVISPAQRRSVA-TLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 83 ~~~~~~~~~~-~l~~~~~d~~i~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
..++|+|++. .+++++.|+.+++||...+..+. .+..|.... .. .|+| ++.++++++.|+.+++||+
T Consensus 202 ~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~--~~~~-~~~~~~~~~~d~~~~~~~~ 270 (466)
T COG2319 202 SSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VS--SFSP-DGSLLASGSSDGTIRLWDL 270 (466)
T ss_pred EEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eE--eECC-CCCEEEEecCCCcEEEeee
Confidence 4567889988 55555999999999988777776 465554433 22 7888 5578889999999999986
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.6e-14 Score=89.45 Aligned_cols=124 Identities=16% Similarity=0.118 Sum_probs=98.1
Q ss_pred eecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccc---eeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEE
Q 038702 28 VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT---AMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVE 104 (154)
Q Consensus 28 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 104 (154)
+.+|.+.|.++.|+.++++|++|+.|..+++|++...-.. +.+... .+.+...+++++|.....++++|..+++|.
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~-~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI 130 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVM-EHPHRSNIFSLEFDLENRFLYSGERWGTVI 130 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceec-cCccccceEEEEEccCCeeEecCCCcceeE
Confidence 3479999999999999999999999999999998753211 112111 122223577889999999999999999999
Q ss_pred EecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 105 VISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 105 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
..|+++.+.+..+...........+..+| ..+.|++.+.++.|.+||.
T Consensus 131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~ 178 (609)
T KOG4227|consen 131 KHDIETKQSIYVANENNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDN 178 (609)
T ss_pred eeecccceeeeeecccCcccceeecccCC-CCceEEEEecCceEEEEec
Confidence 99999999888876443333346788999 4689999999999999996
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-13 Score=91.42 Aligned_cols=144 Identities=14% Similarity=0.152 Sum_probs=98.5
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceee-----cccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccc--------
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVL-----SHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENT-------- 67 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~-------- 67 (154)
+.|-.-|.|.+.|....+ ..+++ -.+..++|++|-| +...|+++-.+|.+.+||.+-....
T Consensus 189 lIGf~tGqvq~idp~~~~-----~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~ 263 (636)
T KOG2394|consen 189 LIGFTTGQVQLIDPINFE-----VSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQAL 263 (636)
T ss_pred EEeeccCceEEecchhhH-----HHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccccc
Confidence 344455667766665422 11111 2357899999999 4567777888999999976421100
Q ss_pred ------eeEe---ec--CCCCce----EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEec
Q 038702 68 ------AMIH---HN--NQTGRW----ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAH 132 (154)
Q Consensus 68 ------~~~~---~~--~~~~~~----~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (154)
.+.. +. ++...+ ......+|+|||++||+.+.||.+||||..+.+++..++.-..+- .+++|+
T Consensus 264 k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGL--LCvcWS 341 (636)
T KOG2394|consen 264 KDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGL--LCVCWS 341 (636)
T ss_pred CCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccce--EEEEEc
Confidence 0000 00 000000 012245899999999999999999999999998888777554444 578999
Q ss_pred CCCccEEEEEcCCCeEEEeeC
Q 038702 133 PHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 133 ~~~~~~l~~~~~d~~i~~wd~ 153 (154)
| |+.+|++|+.|..|.||.+
T Consensus 342 P-DGKyIvtGGEDDLVtVwSf 361 (636)
T KOG2394|consen 342 P-DGKYIVTGGEDDLVTVWSF 361 (636)
T ss_pred C-CccEEEecCCcceEEEEEe
Confidence 9 9999999999999999975
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.7e-14 Score=92.67 Aligned_cols=138 Identities=18% Similarity=0.270 Sum_probs=100.9
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|+.++.||.+.+.+-.. +. ......|.+.+.+-.|+|+|.-|+++++||.|++|.-..+-+...... +.
T Consensus 78 ~~i~s~DGkf~il~k~~-rV----E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~----~~-- 146 (737)
T KOG1524|consen 78 LLICSNDGRFVILNKSA-RV----ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQN----EE-- 146 (737)
T ss_pred EEEEcCCceEEEecccc-hh----hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhc----Cc--
Confidence 46788899988876432 21 333448999999999999999999999999999998654433322221 11
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.+.+++|.|+..-++.+. .+.+.|-.+.....+...+.|..-+ .++.|+| .++++++|+.|...++||-
T Consensus 147 ~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGii--L~~~W~~-~s~lI~sgGED~kfKvWD~ 215 (737)
T KOG1524|consen 147 SIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLV--LSLSWST-QSNIIASGGEDFRFKIWDA 215 (737)
T ss_pred eeEEEEECCCCCceEEec-CCeEEEeecccccceeEEeccCcEE--EEeecCc-cccceeecCCceeEEeecc
Confidence 345789999877655543 3456666666665566677665433 6889999 7899999999999999995
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.7e-12 Score=80.03 Aligned_cols=140 Identities=11% Similarity=0.086 Sum_probs=96.0
Q ss_pred CCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEE-eeCCCeEEEEeccccccc--eeE-eecCCCCceEe
Q 038702 6 TDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLAT-TSFDDTIGIWSGVNFENT--AMI-HHNNQTGRWIS 81 (154)
Q Consensus 6 ~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~v~~~~~~~~~~~--~~~-~~~~~~~~~~~ 81 (154)
..+.|.||.+.++-. ..........+..+++++=..+...|+. |-.-|.|.+-|+...... ..+ .|.. .+.
T Consensus 111 l~~~I~VytF~~n~k-~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s----~Ia 185 (346)
T KOG2111|consen 111 LENKIYVYTFPDNPK-LLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDS----DIA 185 (346)
T ss_pred ecCeEEEEEcCCChh-heeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccC----cee
Confidence 356677887764332 1111122222333444333333344444 445789999999876652 332 3433 233
Q ss_pred EEEEEEcCCCcEEEEEccCCe-EEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 82 SFRAIWGWDDSCIFIGNMTRT-VEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~d~~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+++.+.+|..+|+++..|+ |||||..+++.+.+++.........+++|+| +..+|+.++.-|++.++.+
T Consensus 186 --cv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l 255 (346)
T KOG2111|consen 186 --CVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSP-NSSWLAVSSDKGTLHIFSL 255 (346)
T ss_pred --EEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCC-CccEEEEEcCCCeEEEEEe
Confidence 4567889999999999997 7999999999999998766666668899999 8899999999999999876
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.9e-12 Score=88.19 Aligned_cols=142 Identities=15% Similarity=0.160 Sum_probs=99.5
Q ss_pred CCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEecccccccee-----------------
Q 038702 7 DGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAM----------------- 69 (154)
Q Consensus 7 d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~----------------- 69 (154)
+..+.+||...+.. ...+.+|++.|.+++|+.+|..|++|+.|..|.+|+..-......
T Consensus 32 g~rlliyD~ndG~l----lqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~ 107 (1081)
T KOG1538|consen 32 GSRLLVYDTSDGTL----LQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQ 107 (1081)
T ss_pred CCEEEEEeCCCccc----ccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHH
Confidence 45699999998875 555669999999999999999999999999999998653211100
Q ss_pred --------Eee-------cCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEe--CCCcCCcceEEEec
Q 038702 70 --------IHH-------NNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQ--SPYISAIPCRFHAH 132 (154)
Q Consensus 70 --------~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 132 (154)
+.. -.......++.+++|..||++++.|-.+|+|.+-+-. ++....+. +.....+ ++++|+
T Consensus 108 LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspi-wsi~~~ 185 (1081)
T KOG1538|consen 108 LASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPI-WSICWN 185 (1081)
T ss_pred hhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCc-eEEEec
Confidence 000 0011223456678999999999999999999988654 33333333 2233333 788998
Q ss_pred CCCc----cEEEEEcCCCeEEEeeCC
Q 038702 133 PHQV----GTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 133 ~~~~----~~l~~~~~d~~i~~wd~~ 154 (154)
|..+ +.++......++.++.++
T Consensus 186 p~sg~G~~di~aV~DW~qTLSFy~Ls 211 (1081)
T KOG1538|consen 186 PSSGEGRNDILAVADWGQTLSFYQLS 211 (1081)
T ss_pred CCCCCCccceEEEEeccceeEEEEec
Confidence 8533 367777777788777653
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.6e-12 Score=84.47 Aligned_cols=140 Identities=26% Similarity=0.346 Sum_probs=99.2
Q ss_pred eeecC-CCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCC-EEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 2 ATSST-DGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGS-SLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 2 ~~~~~-d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
++++. |+.+++|+...... ...+.+|...|.+++|+|++. .+++++.|+.+++||........... ..+...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~--~~~~~~ 244 (466)
T COG2319 171 ASGSSLDGTIKLWDLRTGKP----LSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTL--SGHSDS 244 (466)
T ss_pred EecCCCCCceEEEEcCCCce----EEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeec--CCCCcc
Confidence 34554 99999999987442 333447999999999999988 55555899999999877444333111 111111
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccc-eeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRS-VATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
. +. .|+|++.++++++.|+.+++|+.+.... +..+..| ...+ ..+.+.| ++..+++++.|+.+.+||.
T Consensus 245 ~--~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~v-~~~~~~~-~~~~~~~~~~d~~~~~~~~ 313 (466)
T COG2319 245 V--VS-SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH-SSSV-LSVAFSP-DGKLLASGSSDGTVRLWDL 313 (466)
T ss_pred e--eE-eECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecC-CccE-EEEEECC-CCCEEEEeeCCCcEEEEEc
Confidence 1 11 6899998899999999999999987665 4444334 2333 5678998 6777777888888999976
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-13 Score=91.58 Aligned_cols=143 Identities=13% Similarity=0.099 Sum_probs=101.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcC--CCCEEEEeeCCCeEEEEeccccccceeE-------
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSP--SGSSLATTSFDDTIGIWSGVNFENTAMI------- 70 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~d~~v~~~~~~~~~~~~~~------- 70 (154)
|++||+|-.+.|||....+. ...+. +|...|.+++|-| +.+.+++|..|..|+++|+...+....-
T Consensus 65 L~SGSDD~r~ivWd~~~~Kl----lhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~ 140 (758)
T KOG1310|consen 65 LASGSDDTRLIVWDPFEYKL----LHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETT 140 (758)
T ss_pred EeecCCcceEEeecchhcce----eeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchh
Confidence 68999999999999986552 22222 9999999999999 5678999999999999999863322111
Q ss_pred ----eecCCCCceEeEEEEEEcCCC-cEEEEEccCCeEEEecCCCccceeEE-------eC-CCcCCcceEEEecCCCcc
Q 038702 71 ----HHNNQTGRWISSFRAIWGWDD-SCIFIGNMTRTVEVISPAQRRSVATL-------QS-PYISAIPCRFHAHPHQVG 137 (154)
Q Consensus 71 ----~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~ 137 (154)
.|... +. .++..|++ ..+.+++.||+++-+|++.......- .. +..-.-.-++..+|.++.
T Consensus 141 ~~~~cht~r----VK--ria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~ 214 (758)
T KOG1310|consen 141 RCWSCHTDR----VK--RIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPY 214 (758)
T ss_pred hhhhhhhhh----hh--heecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCc
Confidence 11111 11 34556766 78899999999999999864221110 00 011111235778898999
Q ss_pred EEEEEcCCCeEEEeeC
Q 038702 138 TLAGATGGGQVYVWTS 153 (154)
Q Consensus 138 ~l~~~~~d~~i~~wd~ 153 (154)
+|+.|+.|--.++||.
T Consensus 215 ~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 215 YLAVGGSDPFARLYDR 230 (758)
T ss_pred eEEecCCCchhhhhhh
Confidence 9999999999999983
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.1e-13 Score=79.71 Aligned_cols=101 Identities=13% Similarity=0.239 Sum_probs=72.9
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeC---CCeEEEEeccccccceeEeecCCCCc
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSF---DDTIGIWSGVNFENTAMIHHNNQTGR 78 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (154)
+.|..++.|.+||++. + ....+ +...+..+.|+|+|++++.++. .|.+.+||.++.+......+..
T Consensus 77 i~g~~~~~v~lyd~~~-~-----~i~~~-~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~---- 145 (194)
T PF08662_consen 77 IYGSMPAKVTLYDVKG-K-----KIFSF-GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD---- 145 (194)
T ss_pred EEccCCcccEEEcCcc-c-----EeEee-cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc----
Confidence 3455678999999962 2 22222 3567789999999999999875 4679999999766655443322
Q ss_pred eEeEEEEEEcCCCcEEEEEcc------CCeEEEecCCCccceeEE
Q 038702 79 WISSFRAIWGWDDSCIFIGNM------TRTVEVISPAQRRSVATL 117 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~------d~~i~i~~~~~~~~~~~~ 117 (154)
+..++|+|+|++++++.. |+.++||+.. |+.+...
T Consensus 146 ---~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 146 ---ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred ---EEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 346799999999999874 6788999984 5555443
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.4e-13 Score=84.76 Aligned_cols=118 Identities=17% Similarity=0.150 Sum_probs=88.5
Q ss_pred ccCCeEEEEEcCCCC-EEEEeeCCCeEEEEeccccccce------eEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeE
Q 038702 31 HKRAVHSAYFSPSGS-SLATTSFDDTIGIWSGVNFENTA------MIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTV 103 (154)
Q Consensus 31 ~~~~v~~~~~~~~~~-~l~~~~~d~~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 103 (154)
...++.++.|.++.. .+++|+.|..|++|.+....... .......+...+. .+.|+|+|..|++|+.+|.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN--~vRf~p~gelLASg~D~g~v 89 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVN--VVRFSPDGELLASGGDGGEV 89 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeE--EEEEcCCcCeeeecCCCceE
Confidence 356899999999766 99999999999999987643321 1222333444455 45799999999999999999
Q ss_pred EEecCC--------C--------ccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 104 EVISPA--------Q--------RRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 104 ~i~~~~--------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.+|... + ....+.+.+|...+ ..++|.| ++.++++++.|..+++||+
T Consensus 90 ~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~di--ydL~Ws~-d~~~l~s~s~dns~~l~Dv 152 (434)
T KOG1009|consen 90 FLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDI--YDLAWSP-DSNFLVSGSVDNSVRLWDV 152 (434)
T ss_pred EEEEecCcCCccccchhhhCccceEEEEEecccccch--hhhhccC-CCceeeeeeccceEEEEEe
Confidence 999765 2 11223444554444 4789999 8899999999999999997
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.51 E-value=8e-13 Score=82.41 Aligned_cols=142 Identities=18% Similarity=0.292 Sum_probs=103.9
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCce-eecccCCeEEEEEcCCCCEEEEeeCCCeEEEEecccccc----ceeEeecCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTK-VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN----TAMIHHNNQ 75 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~----~~~~~~~~~ 75 (154)
+|.+-....|.||.....+.- .... +..|...|+.++|+|..+.|++++.|..-++|....+.. +.++.+..
T Consensus 25 iAv~~~~~evhiy~~~~~~~w--~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNr- 101 (361)
T KOG1523|consen 25 IAVSPNNHEVHIYSMLGADLW--EPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINR- 101 (361)
T ss_pred EEeccCCceEEEEEecCCCCc--eeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEecc-
Confidence 356667778999998765421 1333 348999999999999999999999999999999854322 23333333
Q ss_pred CCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccce---eEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 76 TGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSV---ATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
....+.|+|.++.+++|+....|.||-.+..+.- +.++.+.. ....++.|+| ++-+|++|+.|+..+++.
T Consensus 102 -----AAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPir-Stv~sldWhp-nnVLlaaGs~D~k~rVfS 174 (361)
T KOG1523|consen 102 -----AATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIR-STVTSLDWHP-NNVLLAAGSTDGKCRVFS 174 (361)
T ss_pred -----ceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccc-cceeeeeccC-CcceecccccCcceeEEE
Confidence 2346789999999999999999999987754322 11221222 2336899999 778999999999999874
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-12 Score=87.73 Aligned_cols=132 Identities=14% Similarity=0.085 Sum_probs=88.3
Q ss_pred CCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCC---CeEEEEeccccccceeEeecCCCCceEeEE
Q 038702 7 DGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFD---DTIGIWSGVNFENTAMIHHNNQTGRWISSF 83 (154)
Q Consensus 7 d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (154)
+..|.+||..... ...+..|...+.+.+|+|+|+.++..+.+ ..|.+||+.+++.......... ..
T Consensus 183 ~~~i~i~d~dg~~-----~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~------~~ 251 (429)
T PRK01742 183 PYEVRVADYDGFN-----QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH------NG 251 (429)
T ss_pred eEEEEEECCCCCC-----ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc------cC
Confidence 5689999986544 34445788889999999999999887654 3699999987654333221111 11
Q ss_pred EEEEcCCCcEEEEEc-cCCeEEEe--cCCCccceeEEeCCCcCCcceEEEecCCCccEEEE-EcCCCeEEEeeC
Q 038702 84 RAIWGWDDSCIFIGN-MTRTVEVI--SPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAG-ATGGGQVYVWTS 153 (154)
Q Consensus 84 ~~~~~~~~~~l~~~~-~d~~i~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~i~~wd~ 153 (154)
..+|+|+|+.|+.+. .+|.+.|| |+.+++. ..+..+.. ......|+| +++.|+. +..++...+|++
T Consensus 252 ~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~--~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~ 321 (429)
T PRK01742 252 APAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAG--NNTEPSWSP-DGQSILFTSDRSGSPQVYRM 321 (429)
T ss_pred ceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCC--CcCCEEECC-CCCEEEEEECCCCCceEEEE
Confidence 468999999888764 67765555 6655553 44443322 225689999 6776554 446777888764
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1e-11 Score=81.05 Aligned_cols=144 Identities=12% Similarity=0.098 Sum_probs=91.9
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEee-CCCeEEEEeccccccceeEeecCCCCceE
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
++...++.|++|++.+... ....+...+.+....+.++|++++|++++ .++.|.+|++...............+
T Consensus 6 ~~~~~~~~I~~~~~~~~g~--l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~--- 80 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGA--LTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPG--- 80 (330)
T ss_pred EEcCCCCCEEEEEECCCCc--eeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCC---
Confidence 4557789999999964321 11334444556778899999999887765 47889999987322222222111111
Q ss_pred eEEEEEEcCCCcEEEEEc-cCCeEEEecCCC-cc---ceeEEeCCCcCCcceEEEecCCCccEE-EEEcCCCeEEEeeCC
Q 038702 81 SSFRAIWGWDDSCIFIGN-MTRTVEVISPAQ-RR---SVATLQSPYISAIPCRFHAHPHQVGTL-AGATGGGQVYVWTSD 154 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~-~d~~i~i~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~d~~i~~wd~~ 154 (154)
....++++|+++++++++ .++.|.+|++.+ +. .+..+.+ . ..+..++++| +++++ ++...++.|.+||++
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~--~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~ 156 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-L--EGCHSANIDP-DNRTLWVPCLKEDRIRLFTLS 156 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC-C--CcccEeEeCC-CCCEEEEeeCCCCEEEEEEEC
Confidence 123578999999888776 478999999864 22 2222221 1 1234577899 66665 555577999999973
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-12 Score=81.05 Aligned_cols=142 Identities=13% Similarity=0.111 Sum_probs=99.5
Q ss_pred CCCcEEEEEccCCCCC--CCCCc---eeecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEecccccc----ceeEeecCC
Q 038702 6 TDGTACIWDLRSMATD--KPEPT---KVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFEN----TAMIHHNNQ 75 (154)
Q Consensus 6 ~d~~v~vw~~~~~~~~--~~~~~---~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~----~~~~~~~~~ 75 (154)
.+-.+|+|.+...... ....+ +...+..++++..|+. +.+++.+++-|-++.+||++++.. ...+.|..
T Consensus 119 s~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDK- 197 (364)
T KOG0290|consen 119 SSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDK- 197 (364)
T ss_pred ccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCc-
Confidence 3457999998743221 10011 1124678999999988 788999999999999999998733 23344544
Q ss_pred CCceEeEEEEEEcCCC-cEEEEEccCCeEEEecCCCccceeEEeC-CCcCCcceEEEecCCCccEEEEEcCCC-eEEEee
Q 038702 76 TGRWISSFRAIWGWDD-SCIFIGNMTRTVEVISPAQRRSVATLQS-PYISAIPCRFHAHPHQVGTLAGATGGG-QVYVWT 152 (154)
Q Consensus 76 ~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~~wd 152 (154)
.++.++|...+ ..+++.+.||.+|+||++..+--..+.. +.....-..++|++.+.+++++-..|. .|.+.|
T Consensus 198 -----EV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLD 272 (364)
T KOG0290|consen 198 -----EVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILD 272 (364)
T ss_pred -----ceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEE
Confidence 25577888755 5889999999999999998765444432 221222368899998999998877664 566666
Q ss_pred C
Q 038702 153 S 153 (154)
Q Consensus 153 ~ 153 (154)
+
T Consensus 273 i 273 (364)
T KOG0290|consen 273 I 273 (364)
T ss_pred e
Confidence 5
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-12 Score=87.24 Aligned_cols=55 Identities=22% Similarity=0.400 Sum_probs=41.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCC--EEEEeeCCCeEEEEec
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGS--SLATTSFDDTIGIWSG 61 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~~~~~ 61 (154)
|++|+.||+|+||.+.++. +.......+.|.|++|+|.+. .|+++ ....+.+.+.
T Consensus 415 lasGsdDGtvriWEi~TgR-----cvr~~~~d~~I~~vaw~P~~~~~vLAvA-~~~~~~ivnp 471 (733)
T KOG0650|consen 415 LASGSDDGTVRIWEIATGR-----CVRTVQFDSEIRSVAWNPLSDLCVLAVA-VGECVLIVNP 471 (733)
T ss_pred eeecCCCCcEEEEEeecce-----EEEEEeecceeEEEEecCCCCceeEEEE-ecCceEEeCc
Confidence 6899999999999999987 666667778999999999665 34443 3333555443
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-11 Score=80.46 Aligned_cols=151 Identities=11% Similarity=0.093 Sum_probs=91.5
Q ss_pred eeecCCCcEEEEEccCCCCCCCC-Cc-eeecccCCeEEEEEcCCCCEEEEeeC-CCeEEEEecccc--ccce--eEee-c
Q 038702 2 ATSSTDGTACIWDLRSMATDKPE-PT-KVLSHKRAVHSAYFSPSGSSLATTSF-DDTIGIWSGVNF--ENTA--MIHH-N 73 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~-~~-~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~~~~~~~~--~~~~--~~~~-~ 73 (154)
++...++.|.+||+.+....... .. ...........+.|+|++++++++.. +++|.+|++... .... .... .
T Consensus 142 v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p 221 (330)
T PRK11028 142 VPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMP 221 (330)
T ss_pred EeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCC
Confidence 45667799999999763321000 00 01112344678999999999988876 999999999742 2111 1111 0
Q ss_pred CCCCceEeEEEEEEcCCCcEEEEEcc-CCeEEEecCCCccceeEEeCC-CcCCcceEEEecCCCccEEEEEc-CCCeEEE
Q 038702 74 NQTGRWISSFRAIWGWDDSCIFIGNM-TRTVEVISPAQRRSVATLQSP-YISAIPCRFHAHPHQVGTLAGAT-GGGQVYV 150 (154)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~ 150 (154)
...........+.++|++++++++.. ++.|.+|++.+......+.++ .....+..+.++| ++++|+++. .+++|.+
T Consensus 222 ~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~-dg~~l~va~~~~~~v~v 300 (330)
T PRK11028 222 ADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDH-SGKYLIAAGQKSHHISV 300 (330)
T ss_pred CcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECC-CCCEEEEEEccCCcEEE
Confidence 10000112234678999999988864 689999998654322222211 1112335689999 677776655 5899999
Q ss_pred eeC
Q 038702 151 WTS 153 (154)
Q Consensus 151 wd~ 153 (154)
|++
T Consensus 301 ~~~ 303 (330)
T PRK11028 301 YEI 303 (330)
T ss_pred EEE
Confidence 976
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.7e-12 Score=79.02 Aligned_cols=140 Identities=19% Similarity=0.315 Sum_probs=97.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCC-CCEEEEeeCCCeEEEEeccccccc-----------
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPS-GSSLATTSFDDTIGIWSGVNFENT----------- 67 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~-~~~l~~~~~d~~v~~~~~~~~~~~----------- 67 (154)
++.+..|-+|++||-.... +..+. .....|+|++|-|. +..|+.|+..| |.+|........
T Consensus 113 fava~nddvVriy~ksst~-----pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~ 186 (445)
T KOG2139|consen 113 FAVATNDDVVRIYDKSSTC-----PTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHH 186 (445)
T ss_pred hhhhccCcEEEEeccCCCC-----CceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccc
Confidence 4678889999999987632 22222 44568999999995 45777777776 889976532211
Q ss_pred -eeEeecCCCCceEeEEEEEEcCCCcEEEEEcc-CCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCC
Q 038702 68 -AMIHHNNQTGRWISSFRAIWGWDDSCIFIGNM-TRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGG 145 (154)
Q Consensus 68 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 145 (154)
.++.+.+ ...+..+.|.+||..+++++. |..|+|||..++..+..... ..+.. .-+.|+| ++.+|..++-|
T Consensus 187 ~qvl~~pg----h~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~-glgg~-slLkwSP-dgd~lfaAt~d 259 (445)
T KOG2139|consen 187 LQVLQDPG----HNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK-GLGGF-SLLKWSP-DGDVLFAATCD 259 (445)
T ss_pred hhheeCCC----CceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc-CCCce-eeEEEcC-CCCEEEEeccc
Confidence 1111111 134457899999999999884 56899999998876654421 22222 4589999 88999999999
Q ss_pred CeEEEeeC
Q 038702 146 GQVYVWTS 153 (154)
Q Consensus 146 ~~i~~wd~ 153 (154)
+..++|+.
T Consensus 260 avfrlw~e 267 (445)
T KOG2139|consen 260 AVFRLWQE 267 (445)
T ss_pred ceeeeehh
Confidence 99999953
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.3e-12 Score=91.36 Aligned_cols=146 Identities=15% Similarity=0.194 Sum_probs=101.6
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCC--eEEEEEcCCCC-EEEEeeCCCeEEEEeccccccceeEe--ecCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRA--VHSAYFSPSGS-SLATTSFDDTIGIWSGVNFENTAMIH--HNNQ 75 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~-~l~~~~~d~~v~~~~~~~~~~~~~~~--~~~~ 75 (154)
+++|..||.|++||.+...... .......|... |..+.+.++|- .|++|+.||.|.+||++......... ...+
T Consensus 1224 i~AGfaDGsvRvyD~R~a~~ds-~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~ 1302 (1387)
T KOG1517|consen 1224 IAAGFADGSVRVYDRRMAPPDS-LVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWE 1302 (1387)
T ss_pred EEEeecCCceEEeecccCCccc-cceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccc
Confidence 5789999999999998755321 12233378776 99999988765 59999999999999999853322221 1111
Q ss_pred CCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEe------CCCcCCcceEEEecCCCccEEEEEcCCCeEE
Q 038702 76 TGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQ------SPYISAIPCRFHAHPHQVGTLAGATGGGQVY 149 (154)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 149 (154)
.+.... .+..++....+++|+. +.|+||++.. +.+..++ ++..+.. .+++||| ..-+++.|+.|.+|.
T Consensus 1303 yGs~lT--al~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~-scL~FHP-~~~llAaG~~Ds~V~ 1376 (1387)
T KOG1517|consen 1303 YGSALT--ALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSV-SCLAFHP-HRLLLAAGSADSTVS 1376 (1387)
T ss_pred cCccce--eeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCCc-ceeeecc-hhHhhhhccCCceEE
Confidence 122223 3456778889999988 9999999863 3333332 2233333 6799999 557889999999999
Q ss_pred EeeC
Q 038702 150 VWTS 153 (154)
Q Consensus 150 ~wd~ 153 (154)
+|..
T Consensus 1377 iYs~ 1380 (1387)
T KOG1517|consen 1377 IYSC 1380 (1387)
T ss_pred Eeec
Confidence 9864
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.1e-12 Score=79.33 Aligned_cols=148 Identities=17% Similarity=0.096 Sum_probs=107.8
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|++|+.|..-+||....+..-. ..+.+..+....+++.|+|.++.|++|+....|.+|-.+..+.--+..|.. .....
T Consensus 70 Ivtcs~drnayVw~~~~~~~Wk-ptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhik-kPirS 147 (361)
T KOG1523|consen 70 IVTCSHDRNAYVWTQPSGGTWK-PTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIK-KPIRS 147 (361)
T ss_pred eeEccCCCCccccccCCCCeec-cceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhC-Ccccc
Confidence 5799999999999996544322 245566899999999999999999999999999999887665443222211 11112
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCC-----C-------------ccceeEEeCCCcCCcceEEEecCCCccEEEEE
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPA-----Q-------------RRSVATLQSPYISAIPCRFHAHPHQVGTLAGA 142 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~-----~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 142 (154)
.+.++.|+|++-+|++|+.|+..|+|..- . |+++.++. ..+.....+.|+| .++.|+-.
T Consensus 148 tv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~--~~ggwvh~v~fs~-sG~~lawv 224 (361)
T KOG1523|consen 148 TVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS--SSGGWVHGVLFSP-SGNRLAWV 224 (361)
T ss_pred ceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc--cCCCceeeeEeCC-CCCEeeEe
Confidence 34578999999999999999999998532 1 11222222 2333446789999 88999999
Q ss_pred cCCCeEEEeeC
Q 038702 143 TGGGQVYVWTS 153 (154)
Q Consensus 143 ~~d~~i~~wd~ 153 (154)
+.|..+.+=|.
T Consensus 225 ~Hds~v~~~da 235 (361)
T KOG1523|consen 225 GHDSTVSFVDA 235 (361)
T ss_pred cCCCceEEeec
Confidence 99999887653
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-11 Score=85.15 Aligned_cols=146 Identities=14% Similarity=0.185 Sum_probs=108.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
+++|..||.|.+|.-.........+..+-=|.++|.++.|+++|.+|++|+..+-+.+|.+.+++ ...++....
T Consensus 220 ~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs----- 293 (792)
T KOG1963|consen 220 LAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGS----- 293 (792)
T ss_pred EEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCC-----
Confidence 47889999999997543122122233333689999999999999999999999999999999988 444443332
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCC---------cCCcceEEEecCCCccEEEEEcCCCeEEEe
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPY---------ISAIPCRFHAHPHQVGTLAGATGGGQVYVW 151 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w 151 (154)
....+.++||+.+.+....|+.|.+....+.+...++.+.. .......++++| ..+.++..+..|.|.+|
T Consensus 294 ~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~y 372 (792)
T KOG1963|consen 294 PILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFY 372 (792)
T ss_pred eeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEE
Confidence 34467899999999999999999998876665554444321 123346688888 66788888999999999
Q ss_pred eC
Q 038702 152 TS 153 (154)
Q Consensus 152 d~ 153 (154)
|+
T Consensus 373 dl 374 (792)
T KOG1963|consen 373 DL 374 (792)
T ss_pred ec
Confidence 87
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.1e-12 Score=86.14 Aligned_cols=145 Identities=12% Similarity=0.064 Sum_probs=97.8
Q ss_pred CeeecCCCcEEEEEccCCCCCC----CCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEecc-ccccceeEeecCC
Q 038702 1 MATSSTDGTACIWDLRSMATDK----PEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV-NFENTAMIHHNNQ 75 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~-~~~~~~~~~~~~~ 75 (154)
++.|+++|.|.-=+-....... ........|.++|+++.++|=+..++..+.|.++++|... .......+....
T Consensus 363 FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~- 441 (555)
T KOG1587|consen 363 FIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSP- 441 (555)
T ss_pred EEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhcc-
Confidence 4678999988774433322211 1112334789999999999976655555559999999987 333333222111
Q ss_pred CCceEeEEEEEEcCCC-cEEEEEccCCeEEEecCCCcc--ceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 76 TGRWISSFRAIWGWDD-SCIFIGNMTRTVEVISPAQRR--SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 76 ~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
...+.++|+|.. ..++++..||.+.+||+.... ++.+.+.. ..+. ..+.|++ .+..|+.|...|++.+|+
T Consensus 442 ----~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l-~~~~~s~-~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 442 ----DYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVC-SPAL-TRVRWSP-NGKLLAVGDANGTTHILK 514 (555)
T ss_pred ----ceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccc-cccc-ceeecCC-CCcEEEEecCCCcEEEEE
Confidence 135578999975 577888889999999998543 34443322 2233 5567777 789999999999999998
Q ss_pred C
Q 038702 153 S 153 (154)
Q Consensus 153 ~ 153 (154)
+
T Consensus 515 l 515 (555)
T KOG1587|consen 515 L 515 (555)
T ss_pred c
Confidence 7
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.2e-11 Score=77.34 Aligned_cols=141 Identities=17% Similarity=0.171 Sum_probs=92.0
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCC-eEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRA-VHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
++-..++.|.+.|..+.+ .......... -..+.|+|+|+++++++.||.|.++|+.+.+.........
T Consensus 10 V~~~~~~~v~viD~~t~~-----~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~------ 78 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNK-----VVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG------ 78 (369)
T ss_dssp EEEGGGTEEEEEETTT-S-----EEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS------
T ss_pred EEecCCCEEEEEECCCCe-----EEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC------
Confidence 455678999999998866 3444433333 3457899999999999999999999999998776654433
Q ss_pred eEEEEEEcCCCcEEEEEc-cCCeEEEecCCCccceeEEeCCCc-----CCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGN-MTRTVEVISPAQRRSVATLQSPYI-----SAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
....++++++|+++++++ ..+.+.++|.++.+.++.+..... ......+..+|....++++--.-+.|.+-|.
T Consensus 79 ~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy 157 (369)
T PF02239_consen 79 NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDY 157 (369)
T ss_dssp EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEET
T ss_pred CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEe
Confidence 234678899999998776 678999999999999988874321 1222455556645445665555577766663
|
... |
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-13 Score=95.67 Aligned_cols=113 Identities=20% Similarity=0.294 Sum_probs=93.3
Q ss_pred eecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe-ecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEe
Q 038702 28 VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVI 106 (154)
Q Consensus 28 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~ 106 (154)
+.+|...|+|+.|...|.++++|+.|..++||..++..+..... |... + ..++.+.+..++++++.|..|++|
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~d----i--tdlavs~~n~~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGD----I--TDLAVSSNNTMIAAASNDKVIRVW 259 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccc----c--chhccchhhhhhhhcccCceEEEE
Confidence 44799999999999999999999999999999998887765442 3221 2 244556677899999999999999
Q ss_pred cCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 107 SPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.+.++.++..+.+|...+ ++++|+| .. +.+.||++++||-
T Consensus 260 rl~~~~pvsvLrghtgav--taiafsP-~~----sss~dgt~~~wd~ 299 (1113)
T KOG0644|consen 260 RLPDGAPVSVLRGHTGAV--TAIAFSP-RA----SSSDDGTCRIWDA 299 (1113)
T ss_pred ecCCCchHHHHhccccce--eeeccCc-cc----cCCCCCceEeccc
Confidence 999999999999887666 5789998 32 6789999999985
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1e-12 Score=91.17 Aligned_cols=143 Identities=18% Similarity=0.204 Sum_probs=95.8
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCC-CCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQ-TGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~-~~~~ 79 (154)
++++|.|..|++|.++.+.. ...+.+|++.|++++|+|-. +.+.||++++||.+-......-..... .+..
T Consensus 247 iaaaS~D~vIrvWrl~~~~p----vsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~ 318 (1113)
T KOG0644|consen 247 IAAASNDKVIRVWRLPDGAP----VSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDL 318 (1113)
T ss_pred hhhcccCceEEEEecCCCch----HHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccc
Confidence 46899999999999999874 44455999999999999955 778999999999882111100000000 0000
Q ss_pred Ee------------------------EEEEEEcCCC-----------cEEEEEccCCeEEEecCCCccceeEEeCCCcCC
Q 038702 80 IS------------------------SFRAIWGWDD-----------SCIFIGNMTRTVEVISPAQRRSVATLQSPYISA 124 (154)
Q Consensus 80 ~~------------------------~~~~~~~~~~-----------~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~ 124 (154)
+. .-.++|.... .+.+++-.+-.+.+|++.++..++.+.+|....
T Consensus 319 ~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~ 398 (1113)
T KOG0644|consen 319 VDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEV 398 (1113)
T ss_pred eeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccce
Confidence 00 0001121111 233334445567888988998888887776665
Q ss_pred cceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 125 IPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 125 ~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
. .+.+||-+..+..++++||...|||+
T Consensus 399 y--vLd~Hpfn~ri~msag~dgst~iwdi 425 (1113)
T KOG0644|consen 399 Y--VLDVHPFNPRIAMSAGYDGSTIIWDI 425 (1113)
T ss_pred e--eeeecCCCcHhhhhccCCCceEeeec
Confidence 4 67889988888889999999999996
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-11 Score=82.03 Aligned_cols=147 Identities=7% Similarity=0.021 Sum_probs=102.8
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecC------C
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNN------Q 75 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~------~ 75 (154)
..++....|+-.++..+.. ...+....+.++++..++...+|++|+.+|.|-.||.++......+.... .
T Consensus 149 y~~gsg~evYRlNLEqGrf----L~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg 224 (703)
T KOG2321|consen 149 YLVGSGSEVYRLNLEQGRF----LNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPG 224 (703)
T ss_pred EEeecCcceEEEEcccccc----ccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCcc
Confidence 3445555677778877664 33333456899999999988899999999999999999877664443111 1
Q ss_pred CCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 76 TGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
......+..+.|+.+|-.+++|..+|.+.|||+++.+++..-. |........+.|.+.+.+--+.......++|||-
T Consensus 225 ~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kd-h~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~ 301 (703)
T KOG2321|consen 225 GDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKD-HGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDE 301 (703)
T ss_pred ccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecc-cCCccceeeecccccCCCceEEecchHHhhhccc
Confidence 1112234467899899999999999999999999999876654 4333334678887743333333344467899985
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-10 Score=74.40 Aligned_cols=136 Identities=19% Similarity=0.250 Sum_probs=86.2
Q ss_pred eeecCCCcEEEEEccCCCCCCC-------CCceee---cccCCeEEEEEcCCCCEEEEeeC-CCeEEEEeccccccceeE
Q 038702 2 ATSSTDGTACIWDLRSMATDKP-------EPTKVL---SHKRAVHSAYFSPSGSSLATTSF-DDTIGIWSGVNFENTAMI 70 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~-------~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~-d~~v~~~~~~~~~~~~~~ 70 (154)
+.|+..| |.+|.......... ...++. +| .+|++++|+++|..+++++. |..|.+||..++......
T Consensus 157 avgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~ 234 (445)
T KOG2139|consen 157 AVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI 234 (445)
T ss_pred eeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc
Confidence 4455544 88998754211000 011222 34 68999999999999999886 678999999987766544
Q ss_pred eecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCC-CccceeEEeCCCcCCcceEEEecCCCccE-EEEEcCCCeE
Q 038702 71 HHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPA-QRRSVATLQSPYISAIPCRFHAHPHQVGT-LAGATGGGQV 148 (154)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~d~~i 148 (154)
.... .+ ..-+.|+||+.+|+++.-|+..++|+.. +....+-..+. . .+...+|+| .+.+ |.+.+..-.+
T Consensus 235 ~~gl-gg----~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgs-g--rvqtacWsp-cGsfLLf~~sgsp~l 305 (445)
T KOG2139|consen 235 PKGL-GG----FSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGS-G--RVQTACWSP-CGSFLLFACSGSPRL 305 (445)
T ss_pred ccCC-Cc----eeeEEEcCCCCEEEEecccceeeeehhcccceecceeccC-C--ceeeeeecC-CCCEEEEEEcCCceE
Confidence 2211 11 1135899999999999999999999554 33333333222 2 335678999 5554 4444444333
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.6e-12 Score=82.66 Aligned_cols=135 Identities=14% Similarity=0.187 Sum_probs=103.3
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccce-eEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTA-MIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~-~~~~~~~~~~~ 79 (154)
|++++..|.++--|+..++. ...+..-.+.+..++-+|-...+-.|...|+|.+|.....+... ++.|..+
T Consensus 224 L~~~~~~G~L~Y~DVS~Gkl----Va~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~---- 295 (545)
T KOG1272|consen 224 LVAASEAGFLKYQDVSTGKL----VASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGP---- 295 (545)
T ss_pred eeecccCCceEEEeechhhh----hHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCC----
Confidence 57889999999999998875 44555667888899999988899999999999999998877763 4455553
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEe
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 151 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w 151 (154)
+-++++.++|+|++|.+.|..++|||++....+.++..++.. ..++++. ..+|+ .+....+.+|
T Consensus 296 --V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a---~~ls~Sq--kglLA-~~~G~~v~iw 359 (545)
T KOG1272|consen 296 --VSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPA---SNLSLSQ--KGLLA-LSYGDHVQIW 359 (545)
T ss_pred --cceEEECCCCcEEeecccccceeEeeeccccccceeecCCCc---ccccccc--cccee-eecCCeeeee
Confidence 226688999999999999999999999988877777653322 3355553 33444 4555577887
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=8e-12 Score=78.96 Aligned_cols=138 Identities=10% Similarity=0.142 Sum_probs=98.4
Q ss_pred cCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEecccccc-----ceeEeecCCCCce
Q 038702 5 STDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN-----TAMIHHNNQTGRW 79 (154)
Q Consensus 5 ~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~-----~~~~~~~~~~~~~ 79 (154)
+.+-.|-+-++.++. .+.+..++.|.+++|...++++..|+.+|.|...|++...+ ...+.|...
T Consensus 231 G~sqqv~L~nvetg~------~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ss---- 300 (425)
T KOG2695|consen 231 GLSQQVLLTNVETGH------QQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSS---- 300 (425)
T ss_pred cccceeEEEEeeccc------ccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcc----
Confidence 344556666666543 33345677899999999999999999999999999987622 122233221
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccc---eeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRS---VATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
+..+.. .--++++|++++.+|+|++||++.-++ +.+..+|-......-+-.++ .+..+++++.|...++|.++
T Consensus 301 vtslq~-Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~-eeg~I~s~GdDcytRiWsl~ 376 (425)
T KOG2695|consen 301 VTSLQI-LQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKE-EEGSIFSVGDDCYTRIWSLD 376 (425)
T ss_pred hhhhhh-hccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccccc-ccceEEEccCeeEEEEEecc
Confidence 221111 112578999999999999999997666 88888887665545566677 45678889999999999874
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.6e-12 Score=83.80 Aligned_cols=116 Identities=14% Similarity=0.058 Sum_probs=94.7
Q ss_pred ccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCC
Q 038702 31 HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQ 110 (154)
Q Consensus 31 ~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 110 (154)
....|..+.|-|.--+|++++..|.++.-|+.+++....+...... +. .++-+|-+..+-+|...|+|.+|...+
T Consensus 208 ~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~---~~--vm~qNP~NaVih~GhsnGtVSlWSP~s 282 (545)
T KOG1272|consen 208 RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGR---TD--VMKQNPYNAVIHLGHSNGTVSLWSPNS 282 (545)
T ss_pred hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCc---cc--hhhcCCccceEEEcCCCceEEecCCCC
Confidence 3456788889888888999999999999999998877655433221 11 245578888999999999999999999
Q ss_pred ccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 111 RRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.+++..+..|...+ .++++++ ++.+++|.+.|..++|||+.
T Consensus 283 kePLvKiLcH~g~V--~siAv~~-~G~YMaTtG~Dr~~kIWDlR 323 (545)
T KOG1272|consen 283 KEPLVKILCHRGPV--SSIAVDR-GGRYMATTGLDRKVKIWDLR 323 (545)
T ss_pred cchHHHHHhcCCCc--ceEEECC-CCcEEeecccccceeEeeec
Confidence 99988887777666 4789999 89999999999999999983
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.5e-11 Score=80.62 Aligned_cols=142 Identities=15% Similarity=0.194 Sum_probs=101.9
Q ss_pred CeeecCCCcEEEEEccCCCCCCCC--CceeecccC-----CeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeec
Q 038702 1 MATSSTDGTACIWDLRSMATDKPE--PTKVLSHKR-----AVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHN 73 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~--~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~ 73 (154)
|++|+.+|.|..||.+........ ......|.+ .|+++.|+.+|-.+++|+.+|.+.+||++..++.....|.
T Consensus 190 la~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~ 269 (703)
T KOG2321|consen 190 LACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHG 269 (703)
T ss_pred EEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccC
Confidence 467888999999999876431100 001112333 4999999999999999999999999999999888877776
Q ss_pred CCCCceEeEEEEEEcCC--CcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEe
Q 038702 74 NQTGRWISSFRAIWGWD--DSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 151 (154)
Q Consensus 74 ~~~~~~~~~~~~~~~~~--~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w 151 (154)
.... ...+.|.+. ...+++ .....++|||-.+|+....+..... ...+++-| ++.++.++..+..+..|
T Consensus 270 ~e~p----i~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEpt~~---lND~C~~p-~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 270 YELP----IKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEPTSD---LNDFCFVP-GSGMFFTANESSKMHTY 340 (703)
T ss_pred Cccc----eeeecccccCCCceEEe-cchHHhhhcccccCCceeeccccCC---cCceeeec-CCceEEEecCCCcceeE
Confidence 6432 335567654 344544 4456899999999999888763322 25678888 77788888887766544
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.8e-11 Score=77.38 Aligned_cols=115 Identities=17% Similarity=0.128 Sum_probs=89.8
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccce---eE-eecCCC
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTA---MI-HHNNQT 76 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~---~~-~~~~~~ 76 (154)
..|..+|.|..+|++........+...+-|.+.|++++.-. ++++|++++.+|+|++||++..+... .+ +|.+..
T Consensus 268 ~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~ 347 (425)
T KOG2695|consen 268 FNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLS 347 (425)
T ss_pred EecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccc
Confidence 56889999999999987554444666678999999999877 88999999999999999999876632 22 343322
Q ss_pred CceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCC
Q 038702 77 GRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSP 120 (154)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 120 (154)
. .+-+...++...+++++.|...|||.++.+.++.+++.+
T Consensus 348 a----~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 348 A----YLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred c----ccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 1 122345677788889999999999999999999888744
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-11 Score=83.30 Aligned_cols=137 Identities=17% Similarity=0.131 Sum_probs=98.0
Q ss_pred CCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEE
Q 038702 6 TDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRA 85 (154)
Q Consensus 6 ~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (154)
....|++||+..... ..++......|.+++++|.|..|+.++.|+.+..+|+.-...+...- ..+...+. .+
T Consensus 585 Tq~~vRiYdL~kqel----vKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~l--r~H~~avr--~V 656 (733)
T KOG0650|consen 585 TQRSVRIYDLSKQEL----VKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTL--RLHEKAVR--SV 656 (733)
T ss_pred eccceEEEehhHHHH----HHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHh--hhhhhhhh--hh
Confidence 346799999977543 33334556679999999999999999999999999998664432111 11111222 56
Q ss_pred EEcCCCcEEEEEccCCeEEEecCC------Ccc---ceeEEeCCCcC--CcceEEEecCCCccEEEEEcCCCeEEEe
Q 038702 86 IWGWDDSCIFIGNMTRTVEVISPA------QRR---SVATLQSPYIS--AIPCRFHAHPHQVGTLAGATGGGQVYVW 151 (154)
Q Consensus 86 ~~~~~~~~l~~~~~d~~i~i~~~~------~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~~w 151 (154)
+|++.-.++++|+.||++.|+--. ... +++.+++|... .-.....||| ..-.|.+++.||+|++|
T Consensus 657 a~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP-~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 657 AFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHP-RQPWLFSAGADGTIRLF 732 (733)
T ss_pred hhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccC-CCceEEecCCCceEEee
Confidence 889999999999999999988432 222 34556666543 2235778999 66788999999999998
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.8e-11 Score=74.85 Aligned_cols=102 Identities=13% Similarity=0.180 Sum_probs=76.7
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEe
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWIS 81 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (154)
++|+.+..+.+|.+..............-....|..+.+.||++.+++++.|+++++|..++.....++..... .
T Consensus 221 isgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsa-----g 295 (323)
T KOG0322|consen 221 ISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSA-----G 295 (323)
T ss_pred cCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhc-----c
Confidence 35677778888988764322211222222334588999999999999999999999999999988876653221 2
Q ss_pred EEEEEEcCCCcEEEEEccCCeEEEecC
Q 038702 82 SFRAIWGWDDSCIFIGNMTRTVEVISP 108 (154)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~d~~i~i~~~ 108 (154)
+..++|+|+...++.+++|+.|.+|++
T Consensus 296 vn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 296 VNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eeEEEeCCCCchhhhccCCceEEeeec
Confidence 346799999999999999999999986
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.2e-10 Score=75.66 Aligned_cols=131 Identities=12% Similarity=0.103 Sum_probs=86.8
Q ss_pred CcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeC---CCeEEEEeccccccceeEeecCCCCceEeEEE
Q 038702 8 GTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSF---DDTIGIWSGVNFENTAMIHHNNQTGRWISSFR 84 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
..|.++|..... ...+..|...+.+.+|+|+|+.|+..+. +..|.+||+.+++......... ....
T Consensus 182 ~~l~~~d~dg~~-----~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g------~~~~ 250 (435)
T PRK05137 182 KRLAIMDQDGAN-----VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPG------MTFA 250 (435)
T ss_pred eEEEEECCCCCC-----cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCC------cccC
Confidence 367788875433 4555578889999999999998888764 4689999998776543322221 1235
Q ss_pred EEEcCCCcEEE-EEccCCe--EEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEc-CCC--eEEEeeC
Q 038702 85 AIWGWDDSCIF-IGNMTRT--VEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT-GGG--QVYVWTS 153 (154)
Q Consensus 85 ~~~~~~~~~l~-~~~~d~~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~--~i~~wd~ 153 (154)
..|+|+|+.|+ +.+.++. |.+||+.+++.. .+..+. . ......|+| +++.|+..+ .+| .|+++|+
T Consensus 251 ~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~-~-~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~ 321 (435)
T PRK05137 251 PRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSP-A-IDTSPSYSP-DGSQIVFESDRSGSPQLYVMNA 321 (435)
T ss_pred cEECCCCCEEEEEEecCCCceEEEEECCCCceE-EccCCC-C-ccCceeEcC-CCCEEEEEECCCCCCeEEEEEC
Confidence 67999998775 4455554 777788877643 343222 2 224578999 777776655 333 5777775
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.6e-10 Score=77.93 Aligned_cols=131 Identities=16% Similarity=0.135 Sum_probs=85.8
Q ss_pred ecCCCcEEEE--EccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEee-CCCeEEEEeccccccc-eeEeecCCCCce
Q 038702 4 SSTDGTACIW--DLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNFENT-AMIHHNNQTGRW 79 (154)
Q Consensus 4 ~~~d~~v~vw--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~~~~~~~~~~~-~~~~~~~~~~~~ 79 (154)
.+.+|.+.|| |+..+. ...+..+...+....|+|+|+.++..+ .++...+|++...... ....+ .+
T Consensus 266 ~~~~g~~~Iy~~d~~~~~-----~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~---~~-- 335 (429)
T PRK01742 266 SSKDGVLNIYVMGANGGT-----PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGG---RG-- 335 (429)
T ss_pred EecCCcEEEEEEECCCCC-----eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecC---CC--
Confidence 3467776666 444332 344446677788999999999877654 5788888887543222 22211 11
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
....|+|+|++++..+.++ +.+||+.+++....... .. ...+.|+| ++++|+.++.++.+.+|++
T Consensus 336 ---~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~-~~---~~~~~~sP-dG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 336 ---YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST-FL---DESPSISP-NGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred ---CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC-CC---CCCceECC-CCCEEEEEEcCCCceEEEE
Confidence 2356899999998887765 55589988765432222 11 13467999 8899999988888877753
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2e-10 Score=81.22 Aligned_cols=136 Identities=14% Similarity=0.095 Sum_probs=98.0
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccC-----CeEEEEEcCCCCEEEEeeCCCeEEEEeccccccce-eEeecCC
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKR-----AVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTA-MIHHNNQ 75 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~-~~~~~~~ 75 (154)
+.+..++.+-+||...... .....+.. ...-+-++++.-++++|+.-+.+.+|+....+.+. ...|..
T Consensus 103 ~l~~~~ns~~i~d~~~~~~-----~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG- 176 (967)
T KOG0974|consen 103 ALVTSRNSLLIRDSKNSSV-----LSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEG- 176 (967)
T ss_pred EEEEcCceEEEEecccCce-----ehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCC-
Confidence 4566777888888865442 11122222 22233446677789999999999999987443333 333333
Q ss_pred CCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCcccee-EEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 76 TGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVA-TLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.++.+.|+.+|+++++.++|..+|+|++.+.+... +..+|...+ +.+++.| +.+++++.|.+.++|+.
T Consensus 177 -----~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRv--w~~~~~~---n~i~t~gedctcrvW~~ 245 (967)
T KOG0974|consen 177 -----SIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARV--WACCFLP---NRIITVGEDCTCRVWGV 245 (967)
T ss_pred -----ceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccccee--EEEEecc---ceeEEeccceEEEEEec
Confidence 57788999999999999999999999999988766 445555444 6788887 39999999999999964
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-10 Score=80.43 Aligned_cols=138 Identities=12% Similarity=0.117 Sum_probs=95.9
Q ss_pred CCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccc---cceeEeecCCCCceEeEE
Q 038702 7 DGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFE---NTAMIHHNNQTGRWISSF 83 (154)
Q Consensus 7 d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 83 (154)
+..+.+|...+.............|.-.+++.+++|++++++++..||.|.+|.--..+ .....-|.... .+.
T Consensus 180 ~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~----~V~ 255 (792)
T KOG1963|consen 180 MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHD----EVN 255 (792)
T ss_pred eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccc----ccc
Confidence 44577888776441111111122577779999999999999999999999999644311 11111222211 234
Q ss_pred EEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 84 RAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 84 ~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
.++|+++|.+|++|+.++.+-+|.+.+++ .+-++ ..+.....+.++| ++++.+....|..|.+-.
T Consensus 256 ~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLP--RLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~ 320 (792)
T KOG1963|consen 256 SLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLP--RLGSPILHIVVSP-DSDLYSLVLEDNQIHLIK 320 (792)
T ss_pred eeEEecCCceEeecccceEEEEEeecCCC-ccccc--ccCCeeEEEEEcC-CCCeEEEEecCceEEEEe
Confidence 67899999999999999999999999988 22332 2333347889998 888888888999988754
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.7e-10 Score=74.17 Aligned_cols=128 Identities=17% Similarity=0.111 Sum_probs=82.8
Q ss_pred cEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeC---CCeEEEEeccccccceeEeecCCCCceEeEEEE
Q 038702 9 TACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSF---DDTIGIWSGVNFENTAMIHHNNQTGRWISSFRA 85 (154)
Q Consensus 9 ~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (154)
.|.++|....+ ...+..+...+.+.+|+|+|+.|+..+. +..+.+|++.+++.......... ....
T Consensus 180 ~l~~~d~dg~~-----~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~------~~~~ 248 (429)
T PRK03629 180 ELRVSDYDGYN-----QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH------NGAP 248 (429)
T ss_pred eEEEEcCCCCC-----CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCC------cCCe
Confidence 57788876544 3444566778999999999998886542 45789999987654333222111 1145
Q ss_pred EEcCCCcEEEEE-ccCC--eEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcC-CCeEEEe
Q 038702 86 IWGWDDSCIFIG-NMTR--TVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATG-GGQVYVW 151 (154)
Q Consensus 86 ~~~~~~~~l~~~-~~d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~~w 151 (154)
.|+|||+.|+.. +.++ .|++||+.+++...... +.. ......|+| +++.|+..+. ++...+|
T Consensus 249 ~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~-~~~--~~~~~~wSP-DG~~I~f~s~~~g~~~Iy 314 (429)
T PRK03629 249 AFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD-GRS--NNTEPTWFP-DSQNLAYTSDQAGRPQVY 314 (429)
T ss_pred EECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccC-CCC--CcCceEECC-CCCEEEEEeCCCCCceEE
Confidence 799999988765 4444 58899998876543332 222 225689999 7777766554 3444444
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.5e-10 Score=72.14 Aligned_cols=137 Identities=18% Similarity=0.108 Sum_probs=86.1
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCC-EEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGS-SLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
.....|+.|.+|++...+- ..++.....++.+++|||+|+ .|.+...+-+|.+|.+.+....... +... .+
T Consensus 65 C~~yk~~~vqvwsl~Qpew----~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~-~pK~---~~ 136 (447)
T KOG4497|consen 65 CVAYKDPKVQVWSLVQPEW----YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP-HPKT---NV 136 (447)
T ss_pred eeeeccceEEEEEeeccee----EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec-cccc---Cc
Confidence 4567889999999976553 344446678899999999996 4556667999999999877654332 1111 11
Q ss_pred eEEEEEEcCCCcEEEEEcc------------------------------------CCeEEEecCCCccceeEEeCCCcCC
Q 038702 81 SSFRAIWGWDDSCIFIGNM------------------------------------TRTVEVISPAQRRSVATLQSPYISA 124 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~------------------------------------d~~i~i~~~~~~~~~~~~~~~~~~~ 124 (154)
. ..+|+|+|++.+..+. ++.+.+||.--.-.+... +....
T Consensus 137 k--g~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY--e~~lG 212 (447)
T KOG4497|consen 137 K--GYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY--ERGLG 212 (447)
T ss_pred e--eEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeee--eeccc
Confidence 2 3457777777665532 122334442110001111 11112
Q ss_pred cceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 125 IPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 125 ~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
+ ..+.|+| .+++|+.|++|+.+++-|
T Consensus 213 ~-k~v~wsP-~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 213 L-KFVEWSP-CNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred e-eEEEecc-ccceEEeeccchhhhhhc
Confidence 2 4578999 789999999999988754
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-10 Score=77.91 Aligned_cols=97 Identities=16% Similarity=0.273 Sum_probs=69.5
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccc-eeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT-AMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~-~~~~~~~~~~~~ 79 (154)
|+++++||.|++|.-...- ...+.....+|+|++|.|+.+.++.+. .+.+.+-.+.....+ ....|..
T Consensus 119 Llt~GEDG~iKiWSrsGML-----RStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDG----- 187 (737)
T KOG1524|consen 119 LLTAGEDGVIKIWSRSGML-----RSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDG----- 187 (737)
T ss_pred eeeecCCceEEEEeccchH-----HHHHhhcCceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEeccCc-----
Confidence 5789999999999965432 122235678999999999888766653 345666555443322 2222332
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPA 109 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~ 109 (154)
-++++.|++....+++|+.|-..++||..
T Consensus 188 -iiL~~~W~~~s~lI~sgGED~kfKvWD~~ 216 (737)
T KOG1524|consen 188 -LVLSLSWSTQSNIIASGGEDFRFKIWDAQ 216 (737)
T ss_pred -EEEEeecCccccceeecCCceeEEeeccc
Confidence 45678999999999999999999999964
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.9e-10 Score=72.98 Aligned_cols=141 Identities=11% Similarity=0.086 Sum_probs=86.6
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEe---eCCCeEEEEeccccccceeEeecCCCCc
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATT---SFDDTIGIWSGVNFENTAMIHHNNQTGR 78 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~d~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (154)
|.+..+....++++..... ..+......-...-+++.|..+......+ +....+.+|....+......+|..
T Consensus 78 Av~~~~K~~~~f~~~~~~~-~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~lGhvS---- 152 (390)
T KOG3914|consen 78 AVATSSKQRAVFDYRENPK-GAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPILGHVS---- 152 (390)
T ss_pred EEEeCCCceEEEEEecCCC-cceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchhhhhhh----
Confidence 3444555556677665442 11122222223333444444444444333 344445555555444444444443
Q ss_pred eEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeC-CCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 79 WISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQS-PYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
..+.++++||+++++++..|..||+-.......+..+.. |...+ ..++..+ +..|++++.|+++++||+
T Consensus 153 --ml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFV--S~isl~~--~~~LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 153 --MLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFV--STISLTD--NYLLLSGSGDKTLRLWDI 222 (390)
T ss_pred --hhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhhe--eeeeecc--CceeeecCCCCcEEEEec
Confidence 455789999999999999999999988776666666654 54444 3556654 467899999999999997
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.7e-11 Score=91.13 Aligned_cols=136 Identities=15% Similarity=0.199 Sum_probs=98.3
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecC------
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNN------ 74 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~------ 74 (154)
+||+.||.|++|....++. ..... .-...|+.+.|+.+|+.+..+..||.+.+|............|..
T Consensus 2224 ltgs~dgsv~~~~w~~~~~----v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~ 2299 (2439)
T KOG1064|consen 2224 LTGSQDGSVRMFEWGHGQQ----VVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYTSWQCHNKALSDFR 2299 (2439)
T ss_pred EecCCCceEEEEeccCCCe----EEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCcceeccccCCcccccee
Confidence 6899999999999877653 33222 223889999999999999999999999999876221100000000
Q ss_pred --------------------------------CCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCc
Q 038702 75 --------------------------------QTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYI 122 (154)
Q Consensus 75 --------------------------------~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 122 (154)
...+.-....+++.|..+.|++|+.+|.|.+||+++.++++.++.
T Consensus 2300 Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~--- 2376 (2439)
T KOG1064|consen 2300 FIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA--- 2376 (2439)
T ss_pred eeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---
Confidence 000001122467899999999999999999999999888877653
Q ss_pred CCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 123 SAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 123 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
++ ...+|++|+..|.++||+++
T Consensus 2377 --------~~--~~~~f~~~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2377 --------LD--TREYFVTGSSEGNIKIWRLS 2398 (2439)
T ss_pred --------hh--hhheeeccCcccceEEEEcc
Confidence 22 34789999999999999874
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.5e-11 Score=76.20 Aligned_cols=110 Identities=16% Similarity=0.116 Sum_probs=73.8
Q ss_pred EEEEEcCCCCEEEEeeCCCeEEEEeccccccce-eEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccce
Q 038702 36 HSAYFSPSGSSLATTSFDDTIGIWSGVNFENTA-MIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSV 114 (154)
Q Consensus 36 ~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~ 114 (154)
..++|+++|..+++++.||++|+|+........ ...|..+ +. .+.|+||+++|++-+.| ..+||+..++..+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~e----V~--DL~FS~dgk~lasig~d-~~~VW~~~~g~~~ 220 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAE----VK--DLDFSPDGKFLASIGAD-SARVWSVNTGAAL 220 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCc----cc--cceeCCCCcEEEEecCC-ceEEEEeccCchh
Confidence 689999999999999999999999966554433 2233322 33 56899999999999999 8999999999777
Q ss_pred eEEeCCCcCCcceEEEecCCCc---cEEEE--EcCCCeEEEeeC
Q 038702 115 ATLQSPYISAIPCRFHAHPHQV---GTLAG--ATGGGQVYVWTS 153 (154)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~---~~l~~--~~~d~~i~~wd~ 153 (154)
..............+.|.. ++ .+++. ....+.|+.||+
T Consensus 221 a~~t~~~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~~~~ 263 (398)
T KOG0771|consen 221 ARKTPFSKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRLCDI 263 (398)
T ss_pred hhcCCcccchhhhhceecc-cCCCceEEEEEecCCCCceeEEEe
Confidence 6655222222223344443 22 23222 234456666654
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.7e-11 Score=76.51 Aligned_cols=104 Identities=13% Similarity=0.079 Sum_probs=74.1
Q ss_pred cCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEE
Q 038702 5 STDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFR 84 (154)
Q Consensus 5 ~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
++...+.+|....+. .....+|-..++.++|+||+++++++..|+.|++-..........+.- .+.+.+..++
T Consensus 129 gD~~~~di~s~~~~~-----~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl--GH~eFVS~is 201 (390)
T KOG3914|consen 129 GDVYSFDILSADSGR-----CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL--GHKEFVSTIS 201 (390)
T ss_pred CCceeeeeecccccC-----cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc--ccHhheeeee
Confidence 334445555554422 566679999999999999999999999999999977665444322211 2333444443
Q ss_pred EEEcCCCcEEEEEccCCeEEEecCCCccceeEEe
Q 038702 85 AIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQ 118 (154)
Q Consensus 85 ~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 118 (154)
.- ++..|++++-|+++++||+++++++.++.
T Consensus 202 --l~-~~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 202 --LT-DNYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred --ec-cCceeeecCCCCcEEEEecccCCcccccc
Confidence 23 55668999999999999999999886654
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-09 Score=67.97 Aligned_cols=114 Identities=9% Similarity=0.033 Sum_probs=78.5
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcC-CCcEEEEEccCCeEEEecCC-Ccc
Q 038702 35 VHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGW-DDSCIFIGNMTRTVEVISPA-QRR 112 (154)
Q Consensus 35 v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~i~~~~-~~~ 112 (154)
..++.|++.+..++++..+|.+.+-+............ ..+......+.|+. +++.+.+|+.|+.+..||++ .++
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~w---k~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~ 200 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTW---KVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT 200 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccc---cccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc
Confidence 45788999999999999999988555443322221111 11112233455654 45799999999999999999 444
Q ss_pred ceeE-EeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 113 SVAT-LQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 113 ~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.+.. .+.|..++ +++.-+|+.+.++++|++|..|++||.
T Consensus 201 ~i~~n~kvH~~GV--~SI~ss~~~~~~I~TGsYDe~i~~~Dt 240 (339)
T KOG0280|consen 201 FIWHNSKVHTSGV--VSIYSSPPKPTYIATGSYDECIRVLDT 240 (339)
T ss_pred eeeecceeeecce--EEEecCCCCCceEEEeccccceeeeeh
Confidence 4433 33344444 467777778899999999999999996
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.9e-09 Score=72.76 Aligned_cols=129 Identities=12% Similarity=0.063 Sum_probs=80.9
Q ss_pred cEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeC-CCeEEEE--eccccccceeEeecCCCCceEeEEEE
Q 038702 9 TACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSF-DDTIGIW--SGVNFENTAMIHHNNQTGRWISSFRA 85 (154)
Q Consensus 9 ~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (154)
.|.+||+.+++ ...+..+...+....|+|+|+.|+..+. ++...+| |+.+++......... .....
T Consensus 268 ~I~~~d~~tg~-----~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~------~~~~~ 336 (429)
T PRK03629 268 NLYVMDLASGQ-----IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGS------QNQDA 336 (429)
T ss_pred EEEEEECCCCC-----EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCC------CccCE
Confidence 48888887654 3444445556788999999998877665 3444455 555543332221111 11245
Q ss_pred EEcCCCcEEEEEccC---CeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCe---EEEeeC
Q 038702 86 IWGWDDSCIFIGNMT---RTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQ---VYVWTS 153 (154)
Q Consensus 86 ~~~~~~~~l~~~~~d---~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~---i~~wd~ 153 (154)
.|+|+|++++..+.+ ..|.+||+.+++. ..+.... ......|+| ++..|+..+.++. +.++++
T Consensus 337 ~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~~~---~~~~p~~Sp-DG~~i~~~s~~~~~~~l~~~~~ 405 (429)
T PRK03629 337 DVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLTDTF---LDETPSIAP-NGTMVIYSSSQGMGSVLNLVST 405 (429)
T ss_pred EECCCCCEEEEEEccCCCceEEEEECCCCCe-EEeCCCC---CCCCceECC-CCCEEEEEEcCCCceEEEEEEC
Confidence 799999988776543 3588899987764 3343221 113568999 8888888887654 566665
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.6e-10 Score=74.20 Aligned_cols=111 Identities=17% Similarity=0.249 Sum_probs=81.4
Q ss_pred cccCCeEEEEEcCCCCEEEEe--eCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccC---CeEE
Q 038702 30 SHKRAVHSAYFSPSGSSLATT--SFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMT---RTVE 104 (154)
Q Consensus 30 ~~~~~v~~~~~~~~~~~l~~~--~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---~~i~ 104 (154)
...++|.++.|+|+++.|++. -.--++.++|++..-. ..+..... . ++-|+|.|++++.++.+ |.+.
T Consensus 268 ~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v-~df~egpR-----N--~~~fnp~g~ii~lAGFGNL~G~mE 339 (566)
T KOG2315|consen 268 LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPV-FDFPEGPR-----N--TAFFNPHGNIILLAGFGNLPGDME 339 (566)
T ss_pred CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEe-EeCCCCCc-----c--ceEECCCCCEEEEeecCCCCCceE
Confidence 457899999999999877664 4466788999864322 22211111 1 35699999999888754 6899
Q ss_pred EecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcC------CCeEEEeeC
Q 038702 105 VISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATG------GGQVYVWTS 153 (154)
Q Consensus 105 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------d~~i~~wd~ 153 (154)
|||+.+.+++..+.... ..-+.|+| ++++|++++. |+.++||+.
T Consensus 340 vwDv~n~K~i~~~~a~~----tt~~eW~P-dGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 340 VWDVPNRKLIAKFKAAN----TTVFEWSP-DGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred EEeccchhhccccccCC----ceEEEEcC-CCcEEEEEeccccEEecCCeEEEEe
Confidence 99999988888776432 24579999 8999988874 788999975
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.9e-09 Score=72.97 Aligned_cols=132 Identities=14% Similarity=0.025 Sum_probs=84.2
Q ss_pred CCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEE-EeeCCCe--EEEEeccccccceeEeecCCCCceEeEE
Q 038702 7 DGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLA-TTSFDDT--IGIWSGVNFENTAMIHHNNQTGRWISSF 83 (154)
Q Consensus 7 d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (154)
+..|.+||+.++. ...+..+.+.+...+|+|+|+.++ +.+.++. |.+||+.+.....+..+.. ...
T Consensus 225 ~~~i~~~dl~~g~-----~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~------~~~ 293 (435)
T PRK05137 225 RPRVYLLDLETGQ-----RELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPA------IDT 293 (435)
T ss_pred CCEEEEEECCCCc-----EEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCC------ccC
Confidence 4679999997764 334445667788899999998775 4555555 6677887765443322211 112
Q ss_pred EEEEcCCCcEEEEEcc-CC--eEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCC---CeEEEeeC
Q 038702 84 RAIWGWDDSCIFIGNM-TR--TVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGG---GQVYVWTS 153 (154)
Q Consensus 84 ~~~~~~~~~~l~~~~~-d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---~~i~~wd~ 153 (154)
...|+|+|+.++..+. ++ .|+++|+..++.. .+....... ....|+| +++.|+....+ ..|.+||+
T Consensus 294 ~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~--~~~~~Sp-dG~~ia~~~~~~~~~~i~~~d~ 365 (435)
T PRK05137 294 SPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRY--STPVWSP-RGDLIAFTKQGGGQFSIGVMKP 365 (435)
T ss_pred ceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcc--cCeEECC-CCCEEEEEEcCCCceEEEEEEC
Confidence 4679999998887663 33 6888887765543 333222222 3468999 77777765543 36777775
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.4e-10 Score=74.33 Aligned_cols=110 Identities=15% Similarity=0.089 Sum_probs=86.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
|+++..-+.|++||.+.+.. +...+ -...+|+++...|.++++++|..-+.+..+|++.+.......... .+
T Consensus 219 fat~T~~hqvR~YDt~~qRR----PV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~-tG-- 291 (412)
T KOG3881|consen 219 FATITRYHQVRLYDTRHQRR----PVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI-TG-- 291 (412)
T ss_pred EEEEecceeEEEecCcccCc----ceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc-cC--
Confidence 57899999999999987654 44444 457789999999999999999999999999999887665422211 11
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEe
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQ 118 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 118 (154)
..-.+..+|..+++++++-|+.+||+|+.+.+++....
T Consensus 292 -sirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY 329 (412)
T KOG3881|consen 292 -SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY 329 (412)
T ss_pred -CcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh
Confidence 12245668999999999999999999999977665443
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.7e-09 Score=72.18 Aligned_cols=133 Identities=20% Similarity=0.184 Sum_probs=82.4
Q ss_pred CCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEE-EeeCCC--eEEEEeccccccceeEeecCCCCceEeEE
Q 038702 7 DGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLA-TTSFDD--TIGIWSGVNFENTAMIHHNNQTGRWISSF 83 (154)
Q Consensus 7 d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (154)
+..|.+||+..++ ...+..+.+...+.+|+|+|+.++ +.+.++ .|.+||+.+++......+.. ...
T Consensus 227 ~~~l~~~dl~~g~-----~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~------~~~ 295 (433)
T PRK04922 227 RSAIYVQDLATGQ-----RELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFG------IDT 295 (433)
T ss_pred CcEEEEEECCCCC-----EEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCC------Ccc
Confidence 3468899987654 233334455556889999999775 445555 58999998766443322211 112
Q ss_pred EEEEcCCCcEEEEEcc-CCe--EEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCC---eEEEeeCC
Q 038702 84 RAIWGWDDSCIFIGNM-TRT--VEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGG---QVYVWTSD 154 (154)
Q Consensus 84 ~~~~~~~~~~l~~~~~-d~~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~---~i~~wd~~ 154 (154)
...|+|+++.++..+. ++. |.++++.+++.. .+..... .....+|+| +++.|+..+.++ .|.+||++
T Consensus 296 ~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~--~~~~~~~Sp-DG~~Ia~~~~~~~~~~I~v~d~~ 368 (433)
T PRK04922 296 EPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGN--YNARASVSP-DGKKIAMVHGSGGQYRIAVMDLS 368 (433)
T ss_pred ceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-EeecCCC--CccCEEECC-CCCEEEEEECCCCceeEEEEECC
Confidence 4579999998877663 444 666677666533 2321111 123578999 778777654332 68899863
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-09 Score=73.75 Aligned_cols=130 Identities=15% Similarity=0.172 Sum_probs=81.3
Q ss_pred CcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCC---CeEEEEeccccccceeEeecCCCCceEeEEE
Q 038702 8 GTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFD---DTIGIWSGVNFENTAMIHHNNQTGRWISSFR 84 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
..|.++|..... ...+..+...+.+.+|+|+|+.++..+.+ ..|.+||+.+++......... ....
T Consensus 176 ~~L~~~D~dG~~-----~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g------~~~~ 244 (427)
T PRK02889 176 YQLQISDADGQN-----AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKG------SNSA 244 (427)
T ss_pred cEEEEECCCCCC-----ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCC------Cccc
Confidence 346666654322 34445777889999999999998877643 359999998776543322211 1225
Q ss_pred EEEcCCCcEEE-EEccCCeEEEec--CCCccceeEEeCCCcCCcceEEEecCCCccEEEEEc-CCCeEEEee
Q 038702 85 AIWGWDDSCIF-IGNMTRTVEVIS--PAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT-GGGQVYVWT 152 (154)
Q Consensus 85 ~~~~~~~~~l~-~~~~d~~i~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~wd 152 (154)
..|+|+|+.|+ +.+.++..++|. +..++ ...+..+. . ......|+| +++.|+..+ .++...+|.
T Consensus 245 ~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~-~-~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~ 312 (427)
T PRK02889 245 PAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSS-G-IDTEPFFSP-DGRSIYFTSDRGGAPQIYR 312 (427)
T ss_pred eEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCC-C-CCcCeEEcC-CCCEEEEEecCCCCcEEEE
Confidence 68999998876 467777766664 44443 34443322 2 224578999 777766544 345555654
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-09 Score=73.87 Aligned_cols=131 Identities=16% Similarity=0.166 Sum_probs=85.5
Q ss_pred CcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeC---CCeEEEEeccccccceeEeecCCCCceEeEEE
Q 038702 8 GTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSF---DDTIGIWSGVNFENTAMIHHNNQTGRWISSFR 84 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
..|.+||..... ...+..+...+.+.+|+|+|+.++..+. +..+.+||+.+++...+..... ....
T Consensus 184 ~~l~i~D~~g~~-----~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g------~~~~ 252 (433)
T PRK04922 184 YALQVADSDGYN-----PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRG------INGA 252 (433)
T ss_pred EEEEEECCCCCC-----ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCC------CccC
Confidence 358888875433 4455577788999999999999888764 3469999998765543322211 1124
Q ss_pred EEEcCCCcEEE-EEccCC--eEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEc-CCCe--EEEeeC
Q 038702 85 AIWGWDDSCIF-IGNMTR--TVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT-GGGQ--VYVWTS 153 (154)
Q Consensus 85 ~~~~~~~~~l~-~~~~d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~--i~~wd~ 153 (154)
..|+|+|+.++ +.+.++ .|++||+.+++.. .+..+. . .....+|+| +++.|+..+ .+|. |+++|+
T Consensus 253 ~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~-~-~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl 323 (433)
T PRK04922 253 PSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHF-G-IDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAA 323 (433)
T ss_pred ceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCC-C-CccceEECC-CCCEEEEEECCCCCceEEEEEC
Confidence 67999998775 444555 5999999887643 343222 2 224678999 777776555 4444 555554
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.9e-09 Score=69.89 Aligned_cols=131 Identities=18% Similarity=0.084 Sum_probs=83.5
Q ss_pred CcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEE-eeCCC--eEEEEeccccccceeEeecCCCCceEeEEE
Q 038702 8 GTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLAT-TSFDD--TIGIWSGVNFENTAMIHHNNQTGRWISSFR 84 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
..|++||+.++. ......+.+.+.+++|+|+++.|+. .+.++ .|.+||+.+........+... ...
T Consensus 214 ~~i~v~d~~~g~-----~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~------~~~ 282 (417)
T TIGR02800 214 PEIYVQDLATGQ-----REKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGI------DTE 282 (417)
T ss_pred cEEEEEECCCCC-----EEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCC------CCC
Confidence 478999987754 2333455666778999999987764 44444 588888877654333222111 113
Q ss_pred EEEcCCCcEEEEEcc-CC--eEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCC---eEEEeeC
Q 038702 85 AIWGWDDSCIFIGNM-TR--TVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGG---QVYVWTS 153 (154)
Q Consensus 85 ~~~~~~~~~l~~~~~-d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~---~i~~wd~ 153 (154)
..|+|+++.|+..+. ++ .|.++++.+++.. .+..+... .....|+| ++.+++.++.++ .|.+||+
T Consensus 283 ~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~--~~~~~~sp-dg~~i~~~~~~~~~~~i~~~d~ 353 (417)
T TIGR02800 283 PSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGY--NASPSWSP-DGDLIAFVHREGGGFNIAVMDL 353 (417)
T ss_pred EEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCC--ccCeEECC-CCCEEEEEEccCCceEEEEEeC
Confidence 478999998876654 33 5778888766543 33322222 24578999 778887777665 7888876
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=99.17 E-value=2e-10 Score=51.11 Aligned_cols=35 Identities=34% Similarity=0.587 Sum_probs=32.3
Q ss_pred ceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEe
Q 038702 26 TKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60 (154)
Q Consensus 26 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~ 60 (154)
..+.+|.+.|.+++|+|++++|++++.|+.|++||
T Consensus 5 ~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 5 RTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 34559999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.7e-09 Score=69.89 Aligned_cols=132 Identities=15% Similarity=0.120 Sum_probs=78.9
Q ss_pred CcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEE-EeeCCCeEEEEecc--ccccceeEeecCCCCceEeEEE
Q 038702 8 GTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLA-TTSFDDTIGIWSGV--NFENTAMIHHNNQTGRWISSFR 84 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
..|.+||+.+++ ...+....+.+....|+|+|+.++ +.+.++...+|.+. .........+.. ....
T Consensus 220 ~~I~~~dl~~g~-----~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~------~~~~ 288 (427)
T PRK02889 220 PVVYVHDLATGR-----RRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSG------IDTE 288 (427)
T ss_pred cEEEEEECCCCC-----EEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCC------CCcC
Confidence 458999997765 333334455667899999999886 46778876776553 333222211111 1124
Q ss_pred EEEcCCCcEEEEEcc-CCeEEEecC--CCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCC---eEEEeeCC
Q 038702 85 AIWGWDDSCIFIGNM-TRTVEVISP--AQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGG---QVYVWTSD 154 (154)
Q Consensus 85 ~~~~~~~~~l~~~~~-d~~i~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~---~i~~wd~~ 154 (154)
..|+|||+.++..+. ++...+|.+ .+++. ..+....... ....|+| ++++|+..+.++ .|.+||++
T Consensus 289 ~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~--~~~~~Sp-DG~~Ia~~s~~~g~~~I~v~d~~ 360 (427)
T PRK02889 289 PFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYN--TSPRISP-DGKLLAYISRVGGAFKLYVQDLA 360 (427)
T ss_pred eEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCc--CceEECC-CCCEEEEEEccCCcEEEEEEECC
Confidence 579999998876553 455566644 44432 2222111111 3568999 788887766543 68999863
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.2e-09 Score=71.23 Aligned_cols=140 Identities=9% Similarity=0.059 Sum_probs=103.4
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceee--cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVL--SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
+-|...|.|.+|+...++. ...+. +|.+.|.++.++.+-..|.+++.|+.+..|+..............+
T Consensus 74 vlgt~~g~v~~ys~~~g~i----t~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~---- 145 (541)
T KOG4547|consen 74 VLGTPQGSVLLYSVAGGEI----TAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKP---- 145 (541)
T ss_pred EeecCCccEEEEEecCCeE----EEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCC----
Confidence 4577788999999988764 33333 7999999999999999999999999999999987766555443322
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEec--CCCccEEEEE-cCCCeEEEee
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAH--PHQVGTLAGA-TGGGQVYVWT 152 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~-~~d~~i~~wd 152 (154)
...+.+.+||+..+++++ +.|++||+++++.+..+.+|...+.+..+... ...+.+++++ ..+..+.+|-
T Consensus 146 -~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~ 218 (541)
T KOG4547|consen 146 -LVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWV 218 (541)
T ss_pred -ccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEE
Confidence 223567899999999886 68999999999999999988777654444332 2124555544 3555666664
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=8e-10 Score=68.68 Aligned_cols=127 Identities=14% Similarity=0.115 Sum_probs=79.7
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
+++-.+|.+.+-+....... .......|.-+....+|+. +.+.+++|+.|+.+..||++-+. ..+..+...+...+
T Consensus 137 ~vs~s~G~~~~v~~t~~~le--~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~i~~n~kvH~~GV 213 (339)
T KOG0280|consen 137 FVSDSRGSISGVYETEMVLE--KVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TFIWHNSKVHTSGV 213 (339)
T ss_pred EEEcCCCcEEEEecceeeee--ecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-ceeeecceeeecce
Confidence 34555666664444332210 0223347999999999977 66899999999999999999444 22222122222222
Q ss_pred eEEEEEE-cCCCcEEEEEccCCeEEEecCC-CccceeEEeCCCcCCcceEEEecCCCc
Q 038702 81 SSFRAIW-GWDDSCIFIGNMTRTVEVISPA-QRRSVATLQSPYISAIPCRFHAHPHQV 136 (154)
Q Consensus 81 ~~~~~~~-~~~~~~l~~~~~d~~i~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (154)
. ++.- .|.+.++++|+.|..|++||.+ -++++..-. -.+.+ +.+.++|...
T Consensus 214 ~--SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~--v~GGV-WRi~~~p~~~ 266 (339)
T KOG0280|consen 214 V--SIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK--VGGGV-WRIKHHPEIF 266 (339)
T ss_pred E--EEecCCCCCceEEEeccccceeeeehhcccCccccCc--cccce-EEEEecchhh
Confidence 2 2223 3468899999999999999999 456665433 22333 6778877543
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-08 Score=68.39 Aligned_cols=130 Identities=17% Similarity=0.181 Sum_probs=82.1
Q ss_pred cEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCC---CeEEEEeccccccceeEeecCCCCceEeEEEE
Q 038702 9 TACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFD---DTIGIWSGVNFENTAMIHHNNQTGRWISSFRA 85 (154)
Q Consensus 9 ~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (154)
.|.++|..... ...+..+...+.+.+|+|+|++++....+ ..|.+||+.+++......... ....+
T Consensus 171 ~l~~~d~~g~~-----~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~------~~~~~ 239 (417)
T TIGR02800 171 ELQVADYDGAN-----PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPG------MNGAP 239 (417)
T ss_pred eEEEEcCCCCC-----CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCC------Cccce
Confidence 46677765333 44455677788999999999999887654 479999998765443332211 12246
Q ss_pred EEcCCCcEEEE-EccCC--eEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcC-CC--eEEEeeC
Q 038702 86 IWGWDDSCIFI-GNMTR--TVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATG-GG--QVYVWTS 153 (154)
Q Consensus 86 ~~~~~~~~l~~-~~~d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~--~i~~wd~ 153 (154)
.|+|+++.|+. .+.++ .|++|++.+++.. .+..+.. ......|+| +++.|+..+. ++ .|+++|+
T Consensus 240 ~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~--~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~ 309 (417)
T TIGR02800 240 AFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPG--IDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDA 309 (417)
T ss_pred EECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCC--CCCCEEECC-CCCEEEEEECCCCCceEEEEEC
Confidence 79999987764 44444 5888898876543 3332221 123567888 6776665543 33 5776665
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.8e-10 Score=74.95 Aligned_cols=147 Identities=14% Similarity=0.083 Sum_probs=105.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcC--CCCEEEEeeCCCeEEEEeccccccceeEeecCCCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSP--SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTG 77 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~ 77 (154)
|++|++|..|.+||...... ...+. +|...|...+|-| +.+.+++++.||.+++=.+..............+.
T Consensus 157 l~SgSDD~~vv~WdW~~~~~----~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~ 232 (559)
T KOG1334|consen 157 LASGSDDLQVVVWDWVSGSP----KLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHE 232 (559)
T ss_pred eeccCccceEEeehhhccCc----ccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceeccccc
Confidence 57899999999999988775 55555 8999999999988 45689999999999987765433322111111122
Q ss_pred ceEeEEEEEEcCC-CcEEEEEccCCeEEEecCCCccceeEEe--CCCcC--CcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 78 RWISSFRAIWGWD-DSCIFIGNMTRTVEVISPAQRRSVATLQ--SPYIS--AIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 78 ~~~~~~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
..+. .++..|+ ...|.+++.|+.+.-+|+++..+...+. ..... +...+++.+|.+...+++|+.|..+++||
T Consensus 233 g~vh--klav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD 310 (559)
T KOG1334|consen 233 GPVH--KLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYD 310 (559)
T ss_pred Cccc--eeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhc
Confidence 2222 3445564 4578999999999999999776544433 22222 33467888998888999999999999998
Q ss_pred C
Q 038702 153 S 153 (154)
Q Consensus 153 ~ 153 (154)
.
T Consensus 311 ~ 311 (559)
T KOG1334|consen 311 Q 311 (559)
T ss_pred c
Confidence 5
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.9e-09 Score=73.24 Aligned_cols=111 Identities=11% Similarity=0.123 Sum_probs=82.4
Q ss_pred CeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe-ecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCc-
Q 038702 34 AVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQR- 111 (154)
Q Consensus 34 ~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~- 111 (154)
.|..++|-|+|..|+.+.. ..+.+||...+.....+. |.. .+.+++|+.+|+.+++|+.|..|.+|+..-.
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKD------tVycVAys~dGkrFASG~aDK~VI~W~~klEG 86 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKD------TVYCVAYAKDGKRFASGSADKSVIIWTSKLEG 86 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccc------eEEEEEEccCCceeccCCCceeEEEecccccc
Confidence 7999999999998888754 468999999887765443 433 4567899999999999999999999986411
Q ss_pred -------cceeEE--e-------------------------CCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 112 -------RSVATL--Q-------------------------SPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 112 -------~~~~~~--~-------------------------~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
..++-+ . .+.....+++.+|.. ++++|+.|-.+|+|.+-+
T Consensus 87 ~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtn-DGqylalG~~nGTIsiRN 160 (1081)
T KOG1538|consen 87 ILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTN-DGQYLALGMFNGTISIRN 160 (1081)
T ss_pred eeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecC-CCcEEEEeccCceEEeec
Confidence 111100 0 022334456778888 899999999999998754
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.5e-08 Score=67.59 Aligned_cols=130 Identities=18% Similarity=0.150 Sum_probs=81.1
Q ss_pred cEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCC---CeEEEEeccccccceeEeecCCCCceEeEEEE
Q 038702 9 TACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFD---DTIGIWSGVNFENTAMIHHNNQTGRWISSFRA 85 (154)
Q Consensus 9 ~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (154)
.|.++|..... ...+..+...+....|+|+|+.|+..+.+ ..|.+|++.+++...+..... .....
T Consensus 180 ~l~~~d~~g~~-----~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g------~~~~~ 248 (430)
T PRK00178 180 TLQRSDYDGAR-----AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEG------LNGAP 248 (430)
T ss_pred EEEEECCCCCC-----ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCC------CcCCe
Confidence 36666665433 44455777889999999999998776543 368889998765443322111 11245
Q ss_pred EEcCCCcEEEE-EccCC--eEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEc-CCC--eEEEeeC
Q 038702 86 IWGWDDSCIFI-GNMTR--TVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT-GGG--QVYVWTS 153 (154)
Q Consensus 86 ~~~~~~~~l~~-~~~d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~--~i~~wd~ 153 (154)
.|+|+|+.|+. ...++ .|+++|+.+++.. .+..+.. ......|+| +++.|+..+ .++ .|+++|+
T Consensus 249 ~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~--~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~ 318 (430)
T PRK00178 249 AWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPA--IDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNV 318 (430)
T ss_pred EECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCC--CcCCeEECC-CCCEEEEEECCCCCceEEEEEC
Confidence 79999998764 44444 5888899877643 3332221 224578999 666655444 333 5666664
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.6e-09 Score=74.63 Aligned_cols=148 Identities=11% Similarity=0.002 Sum_probs=94.3
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEe
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWIS 81 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (154)
+.+..-+.|..||++...... ..+..-..+.|++++.+|.+++++.|+..|.+.+||++-........+... ..+.
T Consensus 1167 vy~T~~~~iv~~D~r~~~~~w--~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~--~~i~ 1242 (1431)
T KOG1240|consen 1167 VYATDLSRIVSWDTRMRHDAW--RLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPAR--APIR 1242 (1431)
T ss_pred EEEEeccceEEecchhhhhHH--hhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCccc--CCcc
Confidence 345566778999998765311 122223457899999999999999999999999999997766544443322 1222
Q ss_pred EEEEE-EcCCCcEEEEEc--cCCeEEEecCCCccceeEEeCC-CcC---------------CcceEEEecCCCccEEEEE
Q 038702 82 SFRAI-WGWDDSCIFIGN--MTRTVEVISPAQRRSVATLQSP-YIS---------------AIPCRFHAHPHQVGTLAGA 142 (154)
Q Consensus 82 ~~~~~-~~~~~~~l~~~~--~d~~i~i~~~~~~~~~~~~~~~-~~~---------------~~~~~~~~~~~~~~~l~~~ 142 (154)
-+.++ +.|.....++++ ..+.|.+|++.++....++... ... ......+--+..+..+.+|
T Consensus 1243 ~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltg 1322 (1431)
T KOG1240|consen 1243 HVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTG 1322 (1431)
T ss_pred eEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeec
Confidence 22222 233344554444 4678999999988766666532 100 0001111112245688999
Q ss_pred cCCCeEEEeeC
Q 038702 143 TGGGQVYVWTS 153 (154)
Q Consensus 143 ~~d~~i~~wd~ 153 (154)
+.|..|+.||.
T Consensus 1323 gsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1323 GSDMKIRKWDP 1333 (1431)
T ss_pred CCccceeeccC
Confidence 99999999996
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.2e-07 Score=62.89 Aligned_cols=145 Identities=13% Similarity=0.102 Sum_probs=88.2
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEee-CCCeEEEEeccccccceeEeecCCC--Cc
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNFENTAMIHHNNQT--GR 78 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~~~~~~~~~~~~~~~~~~~~--~~ 78 (154)
.+++.||.|.++|+.+.+ ......-......++++++|+++++++ ..+.+.++|.++.+....+...... ..
T Consensus 52 yv~~rdg~vsviD~~~~~-----~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~ 126 (369)
T PF02239_consen 52 YVANRDGTVSVIDLATGK-----VVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGP 126 (369)
T ss_dssp EEEETTSEEEEEETTSSS-----EEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS
T ss_pred EEEcCCCeEEEEECCccc-----EEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeeccccccccccc
Confidence 345779999999999877 454455555678999999999998876 5899999999998877655422111 11
Q ss_pred eEeEEEEEEcCCCcEEEE-EccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEE-EcCCCeEEEeeC
Q 038702 79 WISSFRAIWGWDDSCIFI-GNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAG-ATGGGQVYVWTS 153 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~-~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~i~~wd~ 153 (154)
..+...+..+|....++. --..+.|.+.|....+.+..-. ...........|+| ++++++. ......|-++|.
T Consensus 127 ~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~-i~~g~~~~D~~~dp-dgry~~va~~~sn~i~viD~ 201 (369)
T PF02239_consen 127 ESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTT-IKVGRFPHDGGFDP-DGRYFLVAANGSNKIAVIDT 201 (369)
T ss_dssp ---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEE-EE--TTEEEEEE-T-TSSEEEEEEGGGTEEEEEET
T ss_pred CCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceee-ecccccccccccCc-ccceeeecccccceeEEEee
Confidence 112223445677664444 4455888888887765443221 11223346788999 6676554 456678888875
|
... |
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.2e-10 Score=73.73 Aligned_cols=147 Identities=16% Similarity=0.266 Sum_probs=102.4
Q ss_pred CeeecCCCcEEEEEccCCCCCCC-------CCceee-cccCCeEEEEEcCCCCEEEEeeCCCeEEEEecccccc------
Q 038702 1 MATSSTDGTACIWDLRSMATDKP-------EPTKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN------ 66 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~-------~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~------ 66 (154)
+++|+.|--+++||.+.-..... .+..+. ...-.|+++.|+.++.-|.++-.|-.|.++.-..+..
T Consensus 297 faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~ 376 (559)
T KOG1334|consen 297 FAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPS 376 (559)
T ss_pred cccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCC
Confidence 46788899999999876432110 011111 2345799999998777777777788888885443222
Q ss_pred ----c---e-eEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccE
Q 038702 67 ----T---A-MIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGT 138 (154)
Q Consensus 67 ----~---~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (154)
. . ..+|.+... +.... -|.|...|+++|+.=|.|-||+-.+++.+..+.+... + ..++..+|. --+
T Consensus 377 s~~~~~~k~vYKGHrN~~T--VKgVN-FfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~-V-VNCLEpHP~-~Pv 450 (559)
T KOG1334|consen 377 SPREQYVKRVYKGHRNSRT--VKGVN-FFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH-V-VNCLEPHPH-LPV 450 (559)
T ss_pred cchhhccchhhcccccccc--cceee-eccCccceEEecCccceEEEEecchhHHHHHhhcccc-e-EeccCCCCC-Cch
Confidence 0 1 112333222 22221 3789999999999999999999999999999987654 3 377888994 468
Q ss_pred EEEEcCCCeEEEeeC
Q 038702 139 LAGATGGGQVYVWTS 153 (154)
Q Consensus 139 l~~~~~d~~i~~wd~ 153 (154)
|++++-|..|+||-.
T Consensus 451 LAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 451 LASSGIDHDVKIWTP 465 (559)
T ss_pred hhccCCccceeeecC
Confidence 999999999999965
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.4e-09 Score=71.61 Aligned_cols=149 Identities=17% Similarity=0.265 Sum_probs=97.3
Q ss_pred CeeecCCCcEEEEEccCCCCCCC-CCcee--ecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKP-EPTKV--LSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTG 77 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~-~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~ 77 (154)
+++++.|++|++|.++....... ...++ ..|+.+|.++-|-.+-+.+++ .|+-+++||.--+...........++
T Consensus 750 FiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHlWDPFigr~Laq~~dapk~~ 827 (1034)
T KOG4190|consen 750 FISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHLWDPFIGRLLAQMEDAPKEG 827 (1034)
T ss_pred eeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcceeecccccchhHhhhcCcccC
Confidence 47899999999999976432111 11222 289999999999888777665 47889999987666554332222222
Q ss_pred ceEeEEEEEEcCCCcEEEEE-ccCCeEEEecCCCccceeEEeC---CCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 78 RWISSFRAIWGWDDSCIFIG-NMTRTVEVISPAQRRSVATLQS---PYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~-~~d~~i~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
. ...+.+.-+-+...++.+ +...+|+++|.+..+-...++- +.......+++..| .++.++.+-..|.|.+.|.
T Consensus 828 a-~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~-~GN~lAa~LSnGci~~LDa 905 (1034)
T KOG4190|consen 828 A-GGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD-KGNKLAAALSNGCIAILDA 905 (1034)
T ss_pred C-CceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc-CcchhhHHhcCCcEEEEec
Confidence 1 112222223355555555 6788999999998877666652 22223335566777 7788888888888877764
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-07 Score=70.30 Aligned_cols=152 Identities=7% Similarity=-0.002 Sum_probs=93.0
Q ss_pred eeecCCCcEEEEEccCCCCCCC----CCceeec------ccCCeEEEEEcCCCCE-EEEeeCCCeEEEEeccccccceeE
Q 038702 2 ATSSTDGTACIWDLRSMATDKP----EPTKVLS------HKRAVHSAYFSPSGSS-LATTSFDDTIGIWSGVNFENTAMI 70 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~----~~~~~~~------~~~~v~~~~~~~~~~~-l~~~~~d~~v~~~~~~~~~~~~~~ 70 (154)
++.+.++.|++||...+..... ......+ .-.....++++|+++. +++-+.++.|++||+.++......
T Consensus 699 Vad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~ 778 (1057)
T PLN02919 699 IAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLA 778 (1057)
T ss_pred EEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEE
Confidence 4455677888888765421000 0000001 1124567999999884 455566799999999865432111
Q ss_pred ee-----------cCCC-----CceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCC-----------CcC
Q 038702 71 HH-----------NNQT-----GRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSP-----------YIS 123 (154)
Q Consensus 71 ~~-----------~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~-----------~~~ 123 (154)
.- .... ........++++++|..+++-..++.|++||..++......... ...
T Consensus 779 gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l 858 (1057)
T PLN02919 779 GGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQL 858 (1057)
T ss_pred ecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCccccccc
Confidence 00 0000 00112235678999998888889999999999876654322110 011
Q ss_pred CcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 124 AIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 124 ~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
..+..+++++ +++++++-+.++.|++||++
T Consensus 859 ~~P~GIavd~-dG~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 859 SEPAGLALGE-NGRLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred CCceEEEEeC-CCCEEEEECCCCEEEEEECC
Confidence 2346788888 77888988999999999973
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.3e-07 Score=64.15 Aligned_cols=131 Identities=15% Similarity=0.131 Sum_probs=78.1
Q ss_pred CcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEE-eeCCC--eEEEEeccccccceeEeecCCCCceEeEEE
Q 038702 8 GTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLAT-TSFDD--TIGIWSGVNFENTAMIHHNNQTGRWISSFR 84 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
..|.+|++.+++. ..+....+.+....|+|+|+.++. .+.++ .|.++|+.++.......... ....
T Consensus 223 ~~l~~~~l~~g~~-----~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~------~~~~ 291 (430)
T PRK00178 223 PRIFVQNLDTGRR-----EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPA------IDTE 291 (430)
T ss_pred CEEEEEECCCCCE-----EEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCC------CcCC
Confidence 3577888876542 222233445567899999998874 44454 57888988765443322211 1124
Q ss_pred EEEcCCCcEEEEEcc-CC--eEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcC-CC--eEEEeeC
Q 038702 85 AIWGWDDSCIFIGNM-TR--TVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATG-GG--QVYVWTS 153 (154)
Q Consensus 85 ~~~~~~~~~l~~~~~-d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~--~i~~wd~ 153 (154)
..|+|+++.++..+. ++ .|+++++.+++... +.... .......|+| +++.++..+. ++ .|.+||+
T Consensus 292 ~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~--~~~~~~~~Sp-dg~~i~~~~~~~~~~~l~~~dl 362 (430)
T PRK00178 292 PFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVG--NYNARPRLSA-DGKTLVMVHRQDGNFHVAAQDL 362 (430)
T ss_pred eEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCC--CCccceEECC-CCCEEEEEEccCCceEEEEEEC
Confidence 579999997766553 33 57777887776432 22111 1113467899 6777766553 33 5777776
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.6e-09 Score=46.98 Aligned_cols=39 Identities=23% Similarity=0.345 Sum_probs=32.9
Q ss_pred ccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 111 RRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
++++.++.+|...+ .+++|+| ++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i--~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSI--NSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSE--EEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcE--EEEEEec-ccccceeeCCCCEEEEEC
Confidence 35678888776555 5889999 789999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=8e-08 Score=59.51 Aligned_cols=143 Identities=12% Similarity=-0.044 Sum_probs=91.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (154)
|+.|+..|...+|...+++. ..... .|...|.-+.=.. ....+..++.|.++++.+++...........+
T Consensus 87 la~gG~~g~fd~~~~~tn~~----h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~---- 158 (344)
T KOG4532|consen 87 LADGGASGQFDLFACNTNDG----HLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQN---- 158 (344)
T ss_pred EEeccccceeeeecccCccc----ceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccc----
Confidence 46788889999999887654 33333 3433332221111 22245566788888888887655544332221
Q ss_pred eEeEEEEEEcCCCcEEEEEccCCeEEEecCCC-ccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 79 WISSFRAIWGWDDSCIFIGNMTRTVEVISPAQ-RRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+...+++.+++++++++.+....|-.|.+.. ++.+..+.............|+. ....+|++.+||++.+||+
T Consensus 159 -~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~DV 232 (344)
T KOG4532|consen 159 -LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE-NDLQFAVVFQDGTCAIYDV 232 (344)
T ss_pred -cceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc-CcceEEEEecCCcEEEEEe
Confidence 2244678999999999999999999998763 33333322222222224567777 6689999999999999997
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.4e-08 Score=71.86 Aligned_cols=139 Identities=14% Similarity=0.134 Sum_probs=99.4
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeC---------CCeEEEEeccccccceeEe
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSF---------DDTIGIWSGVNFENTAMIH 71 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~v~~~~~~~~~~~~~~~ 71 (154)
+.+|...|+|.+-|.++.+. ...+..|.+.|.++.. +|++|++++. |..|++||+++.+....+.
T Consensus 190 lf~G~t~G~V~LrD~~s~~~----iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~ 263 (1118)
T KOG1275|consen 190 LFCGDTRGTVFLRDPNSFET----IHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ 263 (1118)
T ss_pred EEeecccceEEeecCCcCce----eeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcc
Confidence 35788899999999988774 4555599999988766 7999999876 5568999999988776554
Q ss_pred ecCCCCceEeEEEEEEcCC-CcEEEEEccCCeEEEecCCCc-cc-eeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeE
Q 038702 72 HNNQTGRWISSFRAIWGWD-DSCIFIGNMTRTVEVISPAQR-RS-VATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQV 148 (154)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 148 (154)
..... . -+.|.|. ...++..+..|...+-|..+. .+ .....-+........+.+++ +++.++.|..+|.|
T Consensus 264 ~~~~P-----~-flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSs-n~~alafgd~~g~v 336 (1118)
T KOG1275|consen 264 FPYGP-----Q-FLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISS-NGDALAFGDHEGHV 336 (1118)
T ss_pred cccCc-----h-hhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecC-CCceEEEecccCcE
Confidence 32211 1 1356775 457788888999999884321 11 22222233333347899999 88999999999999
Q ss_pred EEee
Q 038702 149 YVWT 152 (154)
Q Consensus 149 ~~wd 152 (154)
.+|-
T Consensus 337 ~~wa 340 (1118)
T KOG1275|consen 337 NLWA 340 (1118)
T ss_pred eeec
Confidence 9995
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.7e-08 Score=65.78 Aligned_cols=130 Identities=18% Similarity=0.144 Sum_probs=79.1
Q ss_pred cEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeC-CC--eEEEEeccccccceeEeecCCCCceEeEEEE
Q 038702 9 TACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSF-DD--TIGIWSGVNFENTAMIHHNNQTGRWISSFRA 85 (154)
Q Consensus 9 ~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (154)
.+.++|....+ ...+..+...+.+..|+|+|+.++..+. ++ .|.++|+.+++......... .....
T Consensus 199 ~l~i~d~dG~~-----~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g------~~~~~ 267 (448)
T PRK04792 199 QLMIADYDGYN-----EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPG------INGAP 267 (448)
T ss_pred EEEEEeCCCCC-----ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCC------CcCCe
Confidence 45556654433 3344566778899999999998887654 33 58888887765433221111 11245
Q ss_pred EEcCCCcEEEE-EccCCe--EEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEc-CCC--eEEEeeC
Q 038702 86 IWGWDDSCIFI-GNMTRT--VEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT-GGG--QVYVWTS 153 (154)
Q Consensus 86 ~~~~~~~~l~~-~~~d~~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~--~i~~wd~ 153 (154)
.|+|+|+.|+. .+.++. |+++|+.+++.. .+..+.. ......|+| +++.|+..+ .++ .|+++|+
T Consensus 268 ~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~--~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl 337 (448)
T PRK04792 268 RFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRA--IDTEPSWHP-DGKSLIFTSERGGKPQIYRVNL 337 (448)
T ss_pred eECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCC--CccceEECC-CCCEEEEEECCCCCceEEEEEC
Confidence 79999997765 455564 777888877643 3332221 224678999 666665444 344 4555554
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.3e-08 Score=65.93 Aligned_cols=73 Identities=15% Similarity=0.109 Sum_probs=60.1
Q ss_pred cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCC
Q 038702 30 SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPA 109 (154)
Q Consensus 30 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~ 109 (154)
.....+.+++++|+...|+.|+.||+|.+||............ .....++|+|+|..+++|+..|.+.+||+.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~-------~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAE-------FIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeec-------ccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 6788999999999999999999999999999876533322111 123357899999999999999999999986
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.6e-09 Score=80.14 Aligned_cols=125 Identities=10% Similarity=0.136 Sum_probs=87.6
Q ss_pred cCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEE
Q 038702 5 STDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFR 84 (154)
Q Consensus 5 ~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
++++.+.+||.-...... ... ..|.+.++++++.|.-+.|++|+.+|.|++||++..+....+..
T Consensus 2312 ~d~~n~~lwDtl~~~~~s--~v~-~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~------------ 2376 (2439)
T KOG1064|consen 2312 SDNRNVCLWDTLLPPMNS--LVH-TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA------------ 2376 (2439)
T ss_pred CCCCcccchhcccCcccc--eee-eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh------------
Confidence 567889999975543211 222 68999999999999999999999999999999987665433221
Q ss_pred EEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCc---ceEEEecCCCccEEEEEcCCCe
Q 038702 85 AIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAI---PCRFHAHPHQVGTLAGATGGGQ 147 (154)
Q Consensus 85 ~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~ 147 (154)
+. ...++.+|+..|.++||++.....+.++...+...- ...++..-...+.|.+++.||+
T Consensus 2377 --~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2377 --LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVGQCNRIFSCGADGT 2439 (2439)
T ss_pred --hh-hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhcCceeeeccCceEEEecCCCC
Confidence 23 567899999999999999998888877764332111 0111211113456777777763
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.8e-09 Score=64.06 Aligned_cols=142 Identities=12% Similarity=0.125 Sum_probs=81.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCCCEEEEeeC-----CCeEEEEeccccccceeEeecC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATTSF-----DDTIGIWSGVNFENTAMIHHNN 74 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-----d~~v~~~~~~~~~~~~~~~~~~ 74 (154)
++++..||.+.+.+.+..... ..+.. .|.+ -.+.++...++.+.++.. -+..+.|+++..+..... +..
T Consensus 104 V~~~~~dg~~~v~s~~~~~~~---~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~-~~~ 178 (319)
T KOG4714|consen 104 VCIGYADGSLAVFSTDKDLAL---MSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPS-KKA 178 (319)
T ss_pred eEecCCCceEEEEechHHHhh---hhhccccccc-ccccceeecccEEecCCcceEeeccceeeeccccccccccc-ccc
Confidence 467888999999887652210 01111 1221 123334445555554321 122444544433222111 111
Q ss_pred CCCceEeEEEEEEcCC-CcEEEEEccCCeEEEecCCCccceeE-EeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 75 QTGRWISSFRAIWGWD-DSCIFIGNMTRTVEVISPAQRRSVAT-LQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 75 ~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
...+. .++-+|. .+.+++|+.||.+.+||.+....... ++.|. ..+ ..+-|+|.+++.|.+++.||.+-.||
T Consensus 179 --~~~v~--~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk-~~i-~eV~FHpk~p~~Lft~sedGslw~wd 252 (319)
T KOG4714|consen 179 --LDAVT--ALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHK-AEI-WEVHFHPKNPEHLFTCSEDGSLWHWD 252 (319)
T ss_pred --cccch--hhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhh-hhh-hheeccCCCchheeEecCCCcEEEEc
Confidence 11122 2344564 45788899999999999997744333 33343 333 67899999999999999999999998
Q ss_pred C
Q 038702 153 S 153 (154)
Q Consensus 153 ~ 153 (154)
.
T Consensus 253 a 253 (319)
T KOG4714|consen 253 A 253 (319)
T ss_pred C
Confidence 5
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.9e-07 Score=61.39 Aligned_cols=126 Identities=11% Similarity=0.018 Sum_probs=92.5
Q ss_pred CeeecCCC-cEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDG-TACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~-~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
++.|..|| .+-|+|.+.++ ...+.+.-+.|.++..+|+|++++.+.....+-+.|+.++.....-....
T Consensus 374 ~vigt~dgD~l~iyd~~~~e-----~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~----- 443 (668)
T COG4946 374 DVIGTNDGDKLGIYDKDGGE-----VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEY----- 443 (668)
T ss_pred eEEeccCCceEEEEecCCce-----EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEeccccc-----
Confidence 35678888 79999998765 45555777889999999999999999999999999999887665433211
Q ss_pred EeEEEEEEcCCCcEEEEEccCC----eEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEE
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTR----TVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLA 140 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 140 (154)
-......|+|+++++|.+--+| .|+++|+..++...... +. ....+.+|.| ++++|.
T Consensus 444 ~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~t--a~DfsPaFD~-d~ryLY 504 (668)
T COG4946 444 GLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PT--AYDFSPAFDP-DGRYLY 504 (668)
T ss_pred ceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-Cc--ccccCcccCC-CCcEEE
Confidence 1344678999999999987665 68999998877543322 22 2224567777 666553
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.9e-07 Score=58.45 Aligned_cols=143 Identities=15% Similarity=0.164 Sum_probs=83.3
Q ss_pred CCcEEEEEccCCCCCCCCCcee-ecccCCeEEEEEcCCCCEEEEee-CCCeEEEEeccc--cccce--eEeec--CCCCc
Q 038702 7 DGTACIWDLRSMATDKPEPTKV-LSHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVN--FENTA--MIHHN--NQTGR 78 (154)
Q Consensus 7 d~~v~vw~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~~~~~~~--~~~~~--~~~~~--~~~~~ 78 (154)
...|.+|++............. ......-+.+.|+|++++++... .+++|.++++.. +.... ..... ...+.
T Consensus 165 ~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~ 244 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGE 244 (345)
T ss_dssp TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSS
T ss_pred CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccccccc
Confidence 3468888887654211001111 24556778999999999886665 488899999882 21111 11111 11111
Q ss_pred eEeEEEEEEcCCCcEEEEEc-cCCeEEEecCC--Cccc--eeEEeCCCcCCcceEEEecCCCccEEEEEc-CCCeEEEee
Q 038702 79 WISSFRAIWGWDDSCIFIGN-MTRTVEVISPA--QRRS--VATLQSPYISAIPCRFHAHPHQVGTLAGAT-GGGQVYVWT 152 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~-~d~~i~i~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~wd 152 (154)
...-.++++|++++|+++. .++.|.+|++. ++++ +..+. ..+..+..++++| ++++|+++. .++.|.+|+
T Consensus 245 -~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~--~~G~~Pr~~~~s~-~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 245 -NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVP--TGGKFPRHFAFSP-DGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp -SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEE--ESSSSEEEEEE-T-TSSEEEEEETTTTEEEEEE
T ss_pred -CCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEe--CCCCCccEEEEeC-CCCEEEEEecCCCeEEEEE
Confidence 1234567899999887766 45689999983 2332 22222 2234457899999 667766555 678999987
Q ss_pred C
Q 038702 153 S 153 (154)
Q Consensus 153 ~ 153 (154)
+
T Consensus 321 ~ 321 (345)
T PF10282_consen 321 I 321 (345)
T ss_dssp E
T ss_pred E
Confidence 5
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.5e-08 Score=64.58 Aligned_cols=148 Identities=14% Similarity=0.112 Sum_probs=96.0
Q ss_pred ecCCCcEEEEEccCCCC----CCCCCceeecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccc----eeEe-ec
Q 038702 4 SSTDGTACIWDLRSMAT----DKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENT----AMIH-HN 73 (154)
Q Consensus 4 ~~~d~~v~vw~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~----~~~~-~~ 73 (154)
.++|-.|.+|++.-... ...++......+..|++..|+| ..+.|+.++..|+|++.|++..... ..+. ..
T Consensus 181 SADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe 260 (433)
T KOG1354|consen 181 SADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE 260 (433)
T ss_pred eccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence 45677889999865432 1111222223466899999999 5678888999999999999853221 1111 11
Q ss_pred CCC------CceEeEEEEEEcCCCcEEEEEccCCeEEEecCC-CccceeEEeCCC-----------cCCc--ceEEEecC
Q 038702 74 NQT------GRWISSFRAIWGWDDSCIFIGNMTRTVEVISPA-QRRSVATLQSPY-----------ISAI--PCRFHAHP 133 (154)
Q Consensus 74 ~~~------~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~-~~~~~~~~~~~~-----------~~~~--~~~~~~~~ 133 (154)
.+. +....+..+.|+++|+|+++-.. -+|++||+. ..+++.+...|. ...+ ...++|+.
T Consensus 261 dp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg 339 (433)
T KOG1354|consen 261 DPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG 339 (433)
T ss_pred CCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence 110 11112335789999999998653 589999994 556666665432 1111 13567887
Q ss_pred CCccEEEEEcCCCeEEEeeC
Q 038702 134 HQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 134 ~~~~~l~~~~~d~~i~~wd~ 153 (154)
++.++++|++....+++++
T Consensus 340 -~~~~v~TGsy~n~frvf~~ 358 (433)
T KOG1354|consen 340 -NDSYVMTGSYNNVFRVFNL 358 (433)
T ss_pred -CcceEecccccceEEEecC
Confidence 6689999999999999984
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.8e-09 Score=72.13 Aligned_cols=136 Identities=17% Similarity=0.327 Sum_probs=96.0
Q ss_pred cEEEEEccCCCCCCCCCceee--cccCCeEEEEEcCC-CCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEE
Q 038702 9 TACIWDLRSMATDKPEPTKVL--SHKRAVHSAYFSPS-GSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRA 85 (154)
Q Consensus 9 ~v~vw~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (154)
.-.+|++...... .+.+. +|...|+.+-|+|+ ...+++++.|-.+..||+++...+......... ....+
T Consensus 92 kaiiwnlA~ss~~---aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s----~asqV 164 (1081)
T KOG0309|consen 92 KAIIWNLAKSSSN---AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRS----AASQV 164 (1081)
T ss_pred hhhhhhhhcCCcc---ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccc----cCcee
Confidence 3456777543321 23333 89999999999994 568999999999999999988766443221111 12256
Q ss_pred EEcCCCcEEEEEccCCeEEEecCCCc-cceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 86 IWGWDDSCIFIGNMTRTVEVISPAQR-RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 86 ~~~~~~~~l~~~~~d~~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+|+.....+++.+..+.|++||.+-+ .++..++++-..+ ..+.|+......+.+++.|++|+.||-
T Consensus 165 kwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~v--n~~~fnr~~~s~~~s~~~d~tvkfw~y 231 (1081)
T KOG0309|consen 165 KWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSV--NSIDFNRFKYSEIMSSSNDGTVKFWDY 231 (1081)
T ss_pred eecccCcchhhhccCCceEEEeccCCCcceEEecccceee--ehHHHhhhhhhhhcccCCCCceeeecc
Confidence 78887666667777888999999865 5677787743333 345565545567889999999999985
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.5e-07 Score=61.40 Aligned_cols=130 Identities=16% Similarity=0.103 Sum_probs=74.2
Q ss_pred cEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEE-eeCCCe--EEEEeccccccceeEeecCCCCceEeEEEE
Q 038702 9 TACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLAT-TSFDDT--IGIWSGVNFENTAMIHHNNQTGRWISSFRA 85 (154)
Q Consensus 9 ~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (154)
.|.+||+.+++. ..+....+......|+|+|+.|+. .+.++. |.++|+.+++......+.. .....
T Consensus 243 ~L~~~dl~tg~~-----~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~------~~~~p 311 (448)
T PRK04792 243 EIFVQDIYTQVR-----EKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRA------IDTEP 311 (448)
T ss_pred EEEEEECCCCCe-----EEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCC------Cccce
Confidence 577778766542 222222334457899999997765 455664 7777877665433222211 11245
Q ss_pred EEcCCCcEEEEEcc-CC--eEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcC-CC--eEEEeeC
Q 038702 86 IWGWDDSCIFIGNM-TR--TVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATG-GG--QVYVWTS 153 (154)
Q Consensus 86 ~~~~~~~~l~~~~~-d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~--~i~~wd~ 153 (154)
.|+|+++.++..+. ++ .|.++|+.+++... +....... ....|+| ++++|+..+. ++ .|.++|+
T Consensus 312 ~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~--~~~~~Sp-DG~~l~~~~~~~g~~~I~~~dl 381 (448)
T PRK04792 312 SWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQN--LGGSITP-DGRSMIMVNRTNGKFNIARQDL 381 (448)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCC--cCeeECC-CCCEEEEEEecCCceEEEEEEC
Confidence 79999998766553 33 46667777766433 22111111 3468899 6677665543 44 3455554
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=9e-07 Score=60.03 Aligned_cols=134 Identities=16% Similarity=0.058 Sum_probs=72.9
Q ss_pred cEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeC-----CCeEEEEeccccc--cceeEeecCCCCceEe
Q 038702 9 TACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSF-----DDTIGIWSGVNFE--NTAMIHHNNQTGRWIS 81 (154)
Q Consensus 9 ~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~v~~~~~~~~~--~~~~~~~~~~~~~~~~ 81 (154)
.|.+.++..++ ...+....+.....+|+|||+.|+..+. +..+..|++.... ....+.... .+ .
T Consensus 212 ~I~~~~l~~g~-----~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~-~~---~ 282 (428)
T PRK01029 212 KIFLGSLENPA-----GKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEA-FG---T 282 (428)
T ss_pred eEEEEECCCCC-----ceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCC-CC---C
Confidence 46666666544 2333344455567899999998876553 2234446665431 111111111 01 1
Q ss_pred EEEEEEcCCCcEEEEEc-cCCeEEEe--cCCC-ccceeEEeCCCcCCcceEEEecCCCccEEEEEcCC---CeEEEeeCC
Q 038702 82 SFRAIWGWDDSCIFIGN-MTRTVEVI--SPAQ-RRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGG---GQVYVWTSD 154 (154)
Q Consensus 82 ~~~~~~~~~~~~l~~~~-~d~~i~i~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---~~i~~wd~~ 154 (154)
.....|+|||+.|+..+ .+|...+| ++.. +.....+....... ....|+| +++.|+..+.+ ..|.+||++
T Consensus 283 ~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~--~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~ 359 (428)
T PRK01029 283 QGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNS--SCPAWSP-DGKKIAFCSVIKGVRQICVYDLA 359 (428)
T ss_pred cCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCc--cceeECC-CCCEEEEEEcCCCCcEEEEEECC
Confidence 12457999999877655 45654555 4432 22233343222222 4678999 77877765432 468888863
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=8.9e-07 Score=59.96 Aligned_cols=142 Identities=18% Similarity=0.178 Sum_probs=98.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee---cccCCeEEEEE------cC--------------CCCEEEEeeCCCeEE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL---SHKRAVHSAYF------SP--------------SGSSLATTSFDDTIG 57 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~---~~~~~v~~~~~------~~--------------~~~~l~~~~~d~~v~ 57 (154)
+|....||.+++|+...++. ...+. .-.+.-.+..| +| +...++-|...|.|.
T Consensus 8 ~A~~~~~g~l~iw~t~~~~~----~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 8 FALSTGDGRLRIWDTAKNQL----QQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred EeecCCCCeEEEEEccCcee----eeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 35678899999999987653 22221 11222333333 22 233577788899999
Q ss_pred EEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCcc
Q 038702 58 IWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVG 137 (154)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (154)
+|+...++....+......+ .+. ...++.+-..|.+++.|+.+-.|+....+.++..+...... .+++..| ++.
T Consensus 84 ~ys~~~g~it~~~st~~h~~-~v~--~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~--~sl~is~-D~~ 157 (541)
T KOG4547|consen 84 LYSVAGGEITAKLSTDKHYG-NVN--EILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLV--SSLCISP-DGK 157 (541)
T ss_pred EEEecCCeEEEEEecCCCCC-cce--eeecccccCceEecCCceeEEEEecccceeeeeeccCCCcc--ceEEEcC-CCC
Confidence 99999888776654333222 222 34567777899999999999999999999888888655444 5788999 788
Q ss_pred EEEEEcCCCeEEEeeCC
Q 038702 138 TLAGATGGGQVYVWTSD 154 (154)
Q Consensus 138 ~l~~~~~d~~i~~wd~~ 154 (154)
.+++++ +.|++||+.
T Consensus 158 ~l~~as--~~ik~~~~~ 172 (541)
T KOG4547|consen 158 ILLTAS--RQIKVLDIE 172 (541)
T ss_pred EEEecc--ceEEEEEcc
Confidence 888776 489999873
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.2e-07 Score=63.37 Aligned_cols=136 Identities=18% Similarity=0.221 Sum_probs=91.4
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCC-----CCEEEEeeCCCeEEEEeccccccceeE-eecC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPS-----GSSLATTSFDDTIGIWSGVNFENTAMI-HHNN 74 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~d~~v~~~~~~~~~~~~~~-~~~~ 74 (154)
+++||.||+|.|-.+.+.+ .........++.+++++|+ .+++++|+..| +.++.-.-....... .+..
T Consensus 86 ~asCS~DGkv~I~sl~~~~-----~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~ 159 (846)
T KOG2066|consen 86 VASCSDDGKVVIGSLFTDD-----EITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEG 159 (846)
T ss_pred EEEecCCCcEEEeeccCCc-----cceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecC
Confidence 5799999999998887765 3444567889999999996 56899999988 767654433322211 2211
Q ss_pred CCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcC----CcceEEEecCCCccEEEEEcCCCeEEE
Q 038702 75 QTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYIS----AIPCRFHAHPHQVGTLAGATGGGQVYV 150 (154)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~d~~i~~ 150 (154)
.. .+.++.|. |.++|-++.+| |++||+.+++.+..++.++.. .....+.|.+ ...|+.|-.| +|++
T Consensus 160 --eG--~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~--~~~LVIGW~d-~v~i 229 (846)
T KOG2066|consen 160 --EG--PIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQD--EDRLVIGWGD-SVKI 229 (846)
T ss_pred --cc--ceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecC--CCeEEEecCC-eEEE
Confidence 11 23455565 88999888776 799999998887777644322 2245678876 3566666555 5555
Q ss_pred ee
Q 038702 151 WT 152 (154)
Q Consensus 151 wd 152 (154)
..
T Consensus 230 ~~ 231 (846)
T KOG2066|consen 230 CS 231 (846)
T ss_pred EE
Confidence 43
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.8e-06 Score=53.70 Aligned_cols=141 Identities=11% Similarity=-0.051 Sum_probs=90.2
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccC--CeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE--eecCCCC
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKR--AVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI--HHNNQTG 77 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~--~~~~~~~ 77 (154)
..++.|.++++.++..+.. ...-|.. .+.++.++++++++++.+....|..|.+......... ......
T Consensus 132 ~i~sndht~k~~~~~~~s~------~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D- 204 (344)
T KOG4532|consen 132 NIASNDHTGKTMVVSGDSN------KFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSD- 204 (344)
T ss_pred eeccCCcceeEEEEecCcc------cceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCC-
Confidence 4578888888888875432 2222332 2789999999999999999999999998765443222 111111
Q ss_pred ceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeE----EeCCCcCCcceEEEecCCCc-cEEEEEcCCCeEEEee
Q 038702 78 RWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVAT----LQSPYISAIPCRFHAHPHQV-GTLAGATGGGQVYVWT 152 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~~wd 152 (154)
..+...|+.....+|++..||++.|||++....... -+.++.+.. ..+.|+|... .+|...-.-+.+.+-|
T Consensus 205 ---~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~-R~c~Fsl~g~lDLLf~sEhfs~~hv~D 280 (344)
T KOG4532|consen 205 ---HGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAF-RVCRFSLYGLLDLLFISEHFSRVHVVD 280 (344)
T ss_pred ---CceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCce-EEEEecCCCcceEEEEecCcceEEEEE
Confidence 234567898899999999999999999996432221 223344443 4456665221 2344444445666655
Q ss_pred C
Q 038702 153 S 153 (154)
Q Consensus 153 ~ 153 (154)
+
T Consensus 281 ~ 281 (344)
T KOG4532|consen 281 T 281 (344)
T ss_pred c
Confidence 4
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.3e-07 Score=64.09 Aligned_cols=67 Identities=9% Similarity=0.151 Sum_probs=55.3
Q ss_pred EEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 82 SFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+.+++++|+...++.|+.||.|.+||...+..... + ....+..++||| ++.++++|+..|.+.+||+
T Consensus 262 v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-k---a~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 262 VICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-K---AEFIPTLIAWHP-DGAIFVVGSEQGELQCFDM 328 (545)
T ss_pred ceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-e---ecccceEEEEcC-CCcEEEEEcCCceEEEEEe
Confidence 44678999999999999999999999876643322 2 234557899999 8899999999999999996
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.9e-06 Score=56.81 Aligned_cols=117 Identities=15% Similarity=0.074 Sum_probs=91.8
Q ss_pred ecccCCeEEEEEcCCCCEEEEeeCCC-eEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEec
Q 038702 29 LSHKRAVHSAYFSPSGSSLATTSFDD-TIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVIS 107 (154)
Q Consensus 29 ~~~~~~v~~~~~~~~~~~l~~~~~d~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~ 107 (154)
.+|.+.|.-..+.-+++.++.|..|| .+-++|.++.+......... ....+..+++|++++.+.....+.+.|
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg------~I~av~vs~dGK~~vvaNdr~el~vid 429 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLG------NIEAVKVSPDGKKVVVANDRFELWVID 429 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCcc------ceEEEEEcCCCcEEEEEcCceEEEEEE
Confidence 47888899888888888999999999 89999999887665544333 355778899999999999889999999
Q ss_pred CCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCC----eEEEeeCC
Q 038702 108 PAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGG----QVYVWTSD 154 (154)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~----~i~~wd~~ 154 (154)
+.++.... +. .........+.|+| ++++++-+--+| .|+++|++
T Consensus 430 idngnv~~-id-kS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~ 477 (668)
T COG4946 430 IDNGNVRL-ID-KSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMD 477 (668)
T ss_pred ecCCCeeE-ec-ccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecC
Confidence 99987543 32 23445558999999 889998776554 68888863
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.1e-07 Score=57.40 Aligned_cols=59 Identities=29% Similarity=0.558 Sum_probs=50.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVN 63 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~ 63 (154)
++.|+.||.+-+||.+.... +..+. .|+.+|.-+-|+| ++..|+++++||.+-.||..+
T Consensus 195 v~cgt~dg~~~l~d~rn~~~----p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 195 VCCGTDDGIVGLWDARNVAM----PVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EEEecCCCeEEEEEcccccc----hHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 36799999999999988754 44444 8999999999999 788999999999999999765
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.8e-07 Score=65.34 Aligned_cols=146 Identities=16% Similarity=0.145 Sum_probs=99.4
Q ss_pred CeeecCCCcEEEEEccCCCCCCC----------C-CceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEecccccccee
Q 038702 1 MATSSTDGTACIWDLRSMATDKP----------E-PTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAM 69 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~----------~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~ 69 (154)
++.|+.||.+++-.+.+...... . ...+.+|.+.|.-+.|+.+.+.|-++..+|.|.+|-+-.+.-...
T Consensus 29 IAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EE 108 (1189)
T KOG2041|consen 29 IACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEE 108 (1189)
T ss_pred EEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHH
Confidence 47899999999998865432111 0 112348999999999999999999999999999998876543321
Q ss_pred EeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccce-eEEeCCCcCCcceEEEecCCCccEEEEEcCCCeE
Q 038702 70 IHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSV-ATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQV 148 (154)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 148 (154)
..... .. ..+.+++|+.+|..++..-.||.|.+=.+...+.. +.+++. ....+.|++ +.+.++.+-..|.+
T Consensus 109 MiNnR-nK--SvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~----~l~hv~ws~-D~~~~Lf~~ange~ 180 (1189)
T KOG2041|consen 109 MINNR-NK--SVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ----LLAHVLWSE-DLEQALFKKANGET 180 (1189)
T ss_pred HhhCc-Cc--cEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchh----eccceeecc-cHHHHHhhhcCCcE
Confidence 11111 11 13447789999999999888988877655432211 222222 123578888 66777777788888
Q ss_pred EEeeCC
Q 038702 149 YVWTSD 154 (154)
Q Consensus 149 ~~wd~~ 154 (154)
.+||-+
T Consensus 181 hlydnq 186 (1189)
T KOG2041|consen 181 HLYDNQ 186 (1189)
T ss_pred EEeccc
Confidence 888753
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.2e-06 Score=55.03 Aligned_cols=68 Identities=16% Similarity=0.241 Sum_probs=50.9
Q ss_pred EEEEcCCCcEEEEEccCCeEEEecCCCcc-ceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 84 RAIWGWDDSCIFIGNMTRTVEVISPAQRR-SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 84 ~~~~~~~~~~l~~~~~d~~i~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
...|.+....|++|..|..+.+||+.-.+ ....+.+|...+. .+..-+ .-..+.+++.||.|.+||.+
T Consensus 202 ~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~--~l~~~~-~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 202 CLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQ--ALSYAQ-HTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred EEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhh--hhhhhh-hheeeeeccCCCeEEEEecc
Confidence 45799999999999999999999997543 3345556665554 233333 44689999999999999863
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.7e-07 Score=57.08 Aligned_cols=108 Identities=20% Similarity=0.357 Sum_probs=72.4
Q ss_pred eeecCCCcEEEEEccCCCC-----------CCCCCceee-cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccc-e
Q 038702 2 ATSSTDGTACIWDLRSMAT-----------DKPEPTKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT-A 68 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~-----------~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~-~ 68 (154)
+-.+..|+|++-|++.... ..+....++ +--..|..+.|+++|+++++-.. -+|++||+.....+ .
T Consensus 230 ~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~ 308 (433)
T KOG1354|consen 230 VYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVE 308 (433)
T ss_pred EEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcce
Confidence 3457789999999984321 111122222 44578899999999999988644 57999999654433 2
Q ss_pred eEe-ec---------CCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCC
Q 038702 69 MIH-HN---------NQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQ 110 (154)
Q Consensus 69 ~~~-~~---------~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 110 (154)
.+. |. .+......-+.++|+.++.+++||+..+.+++|+...
T Consensus 309 t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 309 TYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred EEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCC
Confidence 222 10 1112222345788999999999999999999999543
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.6e-06 Score=56.65 Aligned_cols=130 Identities=8% Similarity=-0.039 Sum_probs=72.4
Q ss_pred cEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCE--E-EEeeCCC--eEEEEeccccccceeEeecCCCCceEeEE
Q 038702 9 TACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSS--L-ATTSFDD--TIGIWSGVNFENTAMIHHNNQTGRWISSF 83 (154)
Q Consensus 9 ~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l-~~~~~d~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (154)
.|.+.|....+ ...+........+-+|+|+|+. + ++...++ .|.+.++.+++...+..... ...
T Consensus 166 ~l~~~d~dG~~-----~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g------~~~ 234 (428)
T PRK01029 166 ELWSVDYDGQN-----LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQG------NQL 234 (428)
T ss_pred eEEEEcCCCCC-----ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCC------Ccc
Confidence 45566655443 3334445556678899999975 2 2444443 57777887766544433222 123
Q ss_pred EEEEcCCCcEEEEEcc-CC----eEEEecCCCc--cceeEEeCCCcCCcceEEEecCCCccEEEEEc-CCCeEEEe
Q 038702 84 RAIWGWDDSCIFIGNM-TR----TVEVISPAQR--RSVATLQSPYISAIPCRFHAHPHQVGTLAGAT-GGGQVYVW 151 (154)
Q Consensus 84 ~~~~~~~~~~l~~~~~-d~----~i~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~w 151 (154)
...|+|||+.|+..+. +| .+..|++..+ .....+...... .....+|+| +++.|+..+ .+|...+|
T Consensus 235 ~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~-~~~~p~wSP-DG~~Laf~s~~~g~~~ly 308 (428)
T PRK01029 235 MPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFG-TQGNPSFSP-DGTRLVFVSNKDGRPRIY 308 (428)
T ss_pred ceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCC-CcCCeEECC-CCCEEEEEECCCCCceEE
Confidence 4689999988876553 22 3445676643 122223222111 224578999 777666554 46654444
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.2e-05 Score=54.47 Aligned_cols=130 Identities=12% Similarity=0.019 Sum_probs=76.7
Q ss_pred CCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEe-eCC--CeEEEEeccccccceeEeecCCCCceEeEE
Q 038702 7 DGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATT-SFD--DTIGIWSGVNFENTAMIHHNNQTGRWISSF 83 (154)
Q Consensus 7 d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (154)
+..|.++|+.+++ ...+....+......|+|+|+.++.. +.+ ..|.++|+.++....+..... ...
T Consensus 212 ~~~Iyv~dl~tg~-----~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~------~d~ 280 (419)
T PRK04043 212 KPTLYKYNLYTGK-----KEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPG------IDV 280 (419)
T ss_pred CCEEEEEECCCCc-----EEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCC------ccC
Confidence 3467778876654 33333455566678899999876643 333 457777876665333222211 112
Q ss_pred EEEEcCCCcEEEEEcc-CC--eEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCC---------CeEEEe
Q 038702 84 RAIWGWDDSCIFIGNM-TR--TVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGG---------GQVYVW 151 (154)
Q Consensus 84 ~~~~~~~~~~l~~~~~-d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------~~i~~w 151 (154)
...|+|||+.|+..+. .+ .|.+.|+.+++..+.... ... ...|+| +++.|+..... ..|.+.
T Consensus 281 ~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~---g~~--~~~~SP-DG~~Ia~~~~~~~~~~~~~~~~I~v~ 354 (419)
T PRK04043 281 NGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH---GKN--NSSVST-YKNYIVYSSRETNNEFGKNTFNLYLI 354 (419)
T ss_pred ccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC---CCc--CceECC-CCCEEEEEEcCCCcccCCCCcEEEEE
Confidence 3469999987766653 33 577778877765333221 111 248999 77776655533 256776
Q ss_pred eC
Q 038702 152 TS 153 (154)
Q Consensus 152 d~ 153 (154)
|+
T Consensus 355 d~ 356 (419)
T PRK04043 355 ST 356 (419)
T ss_pred EC
Confidence 65
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.5e-07 Score=63.00 Aligned_cols=105 Identities=11% Similarity=0.036 Sum_probs=78.4
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEe---------eCCCeEEEEeccccccceeEe
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATT---------SFDDTIGIWSGVNFENTAMIH 71 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---------~~d~~v~~~~~~~~~~~~~~~ 71 (154)
+|.|...|+|.++|+.++.. ...+.-|+..|.++.|-...+++-.+ +.-+.+.+-|++++....+..
T Consensus 440 vAvGT~sGTV~vvdvst~~v----~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~ 515 (1062)
T KOG1912|consen 440 VAVGTNSGTVDVVDVSTNAV----AASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRG 515 (1062)
T ss_pred EEeecCCceEEEEEecchhh----hhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEccccccccccc
Confidence 36799999999999998874 45556899999999997655544322 223457788999887776665
Q ss_pred ecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCc
Q 038702 72 HNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQR 111 (154)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~ 111 (154)
-..+....+..++ .+..++||+....+.-+.+||+++.
T Consensus 516 l~~~despI~~ir--vS~~~~yLai~Fr~~plEiwd~kt~ 553 (1062)
T KOG1912|consen 516 LQKPDESPIRAIR--VSSSGRYLAILFRREPLEIWDLKTL 553 (1062)
T ss_pred CCCCCcCcceeee--ecccCceEEEEecccchHHHhhccc
Confidence 5555555666554 4677999999999999999998643
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.8e-05 Score=52.35 Aligned_cols=149 Identities=13% Similarity=0.119 Sum_probs=90.5
Q ss_pred eeecCC----CcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeC----CCeEEEEecccc-ccceeEee
Q 038702 2 ATSSTD----GTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSF----DDTIGIWSGVNF-ENTAMIHH 72 (154)
Q Consensus 2 ~~~~~d----~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~v~~~~~~~~-~~~~~~~~ 72 (154)
+.|+.. +.|.+|++....... ..............++++|++++|++... ++.|..|++... ........
T Consensus 3 ~vgsy~~~~~~gI~~~~~d~~~g~l-~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 3 YVGSYTNGKGGGIYVFRFDEETGTL-TLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEECCSSSSTEEEEEEEETTTTEE-EEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEcCCCCCCCcEEEEEEcCCCCCc-eEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 445555 689999995433211 11122234556678899999999999877 568999998775 33333322
Q ss_pred cCCCCceEeEEEEEEcCCCcEEEEEc-cCCeEEEecCCC-ccceeE---Ee----C----CCcCCcceEEEecCCCccEE
Q 038702 73 NNQTGRWISSFRAIWGWDDSCIFIGN-MTRTVEVISPAQ-RRSVAT---LQ----S----PYISAIPCRFHAHPHQVGTL 139 (154)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~i~~~~~-~~~~~~---~~----~----~~~~~~~~~~~~~~~~~~~l 139 (154)
....+. ....++.+|++++|+++. .+|.+.++++.. +..... +. + ......+..+.++| +++++
T Consensus 82 ~~~~g~--~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v 158 (345)
T PF10282_consen 82 VPSGGS--SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFV 158 (345)
T ss_dssp EEESSS--CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEE
T ss_pred eccCCC--CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEE
Confidence 211111 233567899999988886 588999999986 332222 11 0 12334456789999 66665
Q ss_pred EEEc-CCCeEEEeeCC
Q 038702 140 AGAT-GGGQVYVWTSD 154 (154)
Q Consensus 140 ~~~~-~d~~i~~wd~~ 154 (154)
++.. ....|.+|+++
T Consensus 159 ~v~dlG~D~v~~~~~~ 174 (345)
T PF10282_consen 159 YVPDLGADRVYVYDID 174 (345)
T ss_dssp EEEETTTTEEEEEEE-
T ss_pred EEEecCCCEEEEEEEe
Confidence 5543 45688888763
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.3e-07 Score=57.94 Aligned_cols=107 Identities=17% Similarity=0.165 Sum_probs=77.2
Q ss_pred EEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEE-EEccCCeEEEecCCCcccee
Q 038702 37 SAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIF-IGNMTRTVEVISPAQRRSVA 115 (154)
Q Consensus 37 ~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~i~i~~~~~~~~~~ 115 (154)
-.+|||+|+++++.+.- .+.+-|.++.+....+.-... +.-+.|..+..+++ ....++.|.+|++.+.+--.
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldk------i~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~c 85 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDK------IVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYC 85 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHH------hhheeeeccceeeeeeeeccceEEEEEeecceeEE
Confidence 45799999999999876 777888887766544432221 11346777766554 45678899999999988777
Q ss_pred EEeCCCcCCcceEEEecCCCc-cEEEEEcCCCeEEEeeC
Q 038702 116 TLQSPYISAIPCRFHAHPHQV-GTLAGATGGGQVYVWTS 153 (154)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~~wd~ 153 (154)
.+.....+. ...+|+| ++ .+|.+...|-+|.+|.+
T Consensus 86 kIdeg~agl--s~~~WSP-dgrhiL~tseF~lriTVWSL 121 (447)
T KOG4497|consen 86 KIDEGQAGL--SSISWSP-DGRHILLTSEFDLRITVWSL 121 (447)
T ss_pred EeccCCCcc--eeeeECC-CcceEeeeecceeEEEEEEe
Confidence 776444333 5789999 55 56677778999999976
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.7e-05 Score=58.48 Aligned_cols=119 Identities=6% Similarity=-0.040 Sum_probs=75.1
Q ss_pred eEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEeec-----C----CCCceEeEEEEEEcCCCc-EEEEEccCCeE
Q 038702 35 VHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIHHN-----N----QTGRWISSFRAIWGWDDS-CIFIGNMTRTV 103 (154)
Q Consensus 35 v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~-----~----~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i 103 (154)
-..++++| ++..+++.+.++.|++||..+.......... . ..........++++|++. ++++-+.++.|
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~I 764 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSI 764 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeE
Confidence 35789999 5667777778899999998765433221110 0 000111233578899987 44555667899
Q ss_pred EEecCCCccceeEEeCC------------C-------cCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 104 EVISPAQRRSVATLQSP------------Y-------ISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 104 ~i~~~~~~~~~~~~~~~------------~-------~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
++||+.++.......+. . ....+..+++++ +++++++-..+++|++||.+
T Consensus 765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD~~ 833 (1057)
T PLN02919 765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHKIKKLDPA 833 (1057)
T ss_pred EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcEEEEECCCCEEEEEECC
Confidence 99999876532111000 0 011235678888 77888988999999999973
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.3e-07 Score=60.43 Aligned_cols=61 Identities=15% Similarity=0.301 Sum_probs=51.3
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEecccc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNF 64 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~ 64 (154)
|.+|+.|..+.+||+...+. ......+|...|..+...+.-+.+++++.||.|.+|++...
T Consensus 212 LfSg~~d~~vi~wdigg~~g---~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 212 LFSGASDHSVIMWDIGGRKG---TAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred EEeccccCceEEEeccCCcc---eeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 46899999999999976543 13445599999999999999999999999999999998743
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=5e-06 Score=55.90 Aligned_cols=128 Identities=13% Similarity=0.187 Sum_probs=85.0
Q ss_pred CcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEee--CCCeEEEEeccccccceeEeecCCCCceEeEEEE
Q 038702 8 GTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTS--FDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRA 85 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (154)
..+.++++.... ......-.++|...+|.|.++.|++.+ .+..+.++|++.. .......... . .+
T Consensus 255 snLyl~~~~e~~-----i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~~r-----N--T~ 321 (561)
T COG5354 255 SNLYLLRITERS-----IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQKR-----N--TI 321 (561)
T ss_pred ceEEEEeecccc-----cceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEecCCccc-----c--cc
Confidence 346666766433 121226689999999999988776654 6788999999877 2222221111 1 34
Q ss_pred EEcCCCcEEEEEccC---CeEEEecCCCcccee-EEeCCCcCCcceEEEecCCCccEEEEEc------CCCeEEEeeC
Q 038702 86 IWGWDDSCIFIGNMT---RTVEVISPAQRRSVA-TLQSPYISAIPCRFHAHPHQVGTLAGAT------GGGQVYVWTS 153 (154)
Q Consensus 86 ~~~~~~~~l~~~~~d---~~i~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~d~~i~~wd~ 153 (154)
.|+|.+++++.++-| |.+-+||........ .+.+.. +.-+.|+| +++++.+.. .|..|++||+
T Consensus 322 ~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n----~s~~~wsp-d~qF~~~~~ts~k~~~Dn~i~l~~v 394 (561)
T COG5354 322 FFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN----TSYCDWSP-DGQFYDTDTTSEKLRVDNSIKLWDV 394 (561)
T ss_pred cccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC----ceEeeccC-CceEEEecCCCcccccCcceEEEEe
Confidence 689999999997755 679999987654433 454321 23457999 778776654 3788999986
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.3e-05 Score=48.50 Aligned_cols=30 Identities=20% Similarity=0.210 Sum_probs=27.0
Q ss_pred CeEEEEEcCCCCEEEEeeCCCeEEEEeccc
Q 038702 34 AVHSAYFSPSGSSLATTSFDDTIGIWSGVN 63 (154)
Q Consensus 34 ~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~ 63 (154)
.-+.++||||+.+|+.+...|+|+++|+..
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g 74 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMG 74 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEeccc
Confidence 456899999999999999999999999873
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.1e-05 Score=51.03 Aligned_cols=107 Identities=12% Similarity=0.018 Sum_probs=73.3
Q ss_pred CcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeC----------CCeEEEEeccccccceeEeecCC-C
Q 038702 8 GTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSF----------DDTIGIWSGVNFENTAMIHHNNQ-T 76 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------d~~v~~~~~~~~~~~~~~~~~~~-~ 76 (154)
++|.+.|..+.+ ......-...-..+ ++|+++.++.+.. +..|.+||..+.+....+..... .
T Consensus 27 ~~v~ViD~~~~~-----v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~ 100 (352)
T TIGR02658 27 TQVYTIDGEAGR-----VLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPR 100 (352)
T ss_pred ceEEEEECCCCE-----EEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCch
Confidence 789999988766 33333222222234 9999998877655 78999999999887765543211 0
Q ss_pred -CceEeEEEEEEcCCCcEEEEEc-c-CCeEEEecCCCccceeEEeCC
Q 038702 77 -GRWISSFRAIWGWDDSCIFIGN-M-TRTVEVISPAQRRSVATLQSP 120 (154)
Q Consensus 77 -~~~~~~~~~~~~~~~~~l~~~~-~-d~~i~i~~~~~~~~~~~~~~~ 120 (154)
.........+++|+|++|+... . +..|.+.|+.+++.+.++.-+
T Consensus 101 ~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp 147 (352)
T TIGR02658 101 FLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP 147 (352)
T ss_pred hhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC
Confidence 0001112457899999998776 3 689999999999999888753
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.1e-06 Score=60.32 Aligned_cols=118 Identities=8% Similarity=0.031 Sum_probs=83.0
Q ss_pred ccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE---------e-ecCCCCceEeEEEEEEcCCCcEEEEEccC
Q 038702 31 HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI---------H-HNNQTGRWISSFRAIWGWDDSCIFIGNMT 100 (154)
Q Consensus 31 ~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 100 (154)
......|++|+....+++.|+.||.+++..+.+....... . .....++...+.-+.|+...+.|-++..+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 3456789999999999999999999999988764322111 0 11122333344456899999999999999
Q ss_pred CeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEE
Q 038702 101 RTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVY 149 (154)
Q Consensus 101 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 149 (154)
|.|.+|-+-.+.-...+.......+..+++|+. ++..++..-.||.|.
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavI 140 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVI 140 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEE
Confidence 999999988776554444444555557889988 677666666665543
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.6e-05 Score=53.22 Aligned_cols=132 Identities=15% Similarity=0.067 Sum_probs=81.1
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEe
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWIS 81 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (154)
..++.+|.+..+|..+++. .-.. .... ..... ..+..++.++.+|.+..+|..+++..-...... .....
T Consensus 245 y~~~~~g~l~a~d~~tG~~----~W~~-~~~~-~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~--~~~~s 314 (377)
T TIGR03300 245 YAVSYQGRVAALDLRSGRV----LWKR-DASS-YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELK--YRQLT 314 (377)
T ss_pred EEEEcCCEEEEEECCCCcE----EEee-ccCC-ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEcccccc--CCccc
Confidence 3456788889999877653 1111 1111 11111 256778888899999999998876543221111 00001
Q ss_pred EEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEe
Q 038702 82 SFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 151 (154)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w 151 (154)
. .. ..+..+++++.+|.++++|..+++.+..++.+..... ...... + +.|+.++.||.|+.+
T Consensus 315 s--p~--i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~-~sp~~~--~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 315 A--PA--VVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIA-SPPVVV--G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred c--CE--EECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccc-cCCEEE--C-CEEEEEeCCceEEEe
Confidence 0 01 1366888899999999999999999888875443222 223333 2 457788899998865
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00011 Score=47.62 Aligned_cols=144 Identities=19% Similarity=0.256 Sum_probs=88.2
Q ss_pred CCCcEEEEEccCCCCCCCCCceeecccCC----------eEEEEEcCCCCEEEEeeC-CCeEEEEeccccccceeEeecC
Q 038702 6 TDGTACIWDLRSMATDKPEPTKVLSHKRA----------VHSAYFSPSGSSLATTSF-DDTIGIWSGVNFENTAMIHHNN 74 (154)
Q Consensus 6 ~d~~v~vw~~~~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~l~~~~~-d~~v~~~~~~~~~~~~~~~~~~ 74 (154)
..|.|.++-++.... .........|.+. +....+.|+++++++... -.+|.+|++..+.........-
T Consensus 109 ~~g~v~v~p~~~dG~-l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v 187 (346)
T COG2706 109 HSGSVSVYPLQADGS-LQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV 187 (346)
T ss_pred cCceEEEEEcccCCc-cccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc
Confidence 346788888866422 1123344566666 889999999999888753 4469999998655432222111
Q ss_pred CCCceEeEEEEEEcCCCcEEEEEc-cCCeEEEecCCCc-cceeEEeC-------CCcCCcceEEEecCCCccEEEEEc-C
Q 038702 75 QTGRWISSFRAIWGWDDSCIFIGN-MTRTVEVISPAQR-RSVATLQS-------PYISAIPCRFHAHPHQVGTLAGAT-G 144 (154)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~i~~~~~~-~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~-~ 144 (154)
..+.- .-.+.|+|++++....+ .+++|.+|..... ..+..++. -.......++..+| ++++|.++. .
T Consensus 188 ~~G~G--PRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~-dGrFLYasNRg 264 (346)
T COG2706 188 KPGAG--PRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP-DGRFLYASNRG 264 (346)
T ss_pred CCCCC--cceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC-CCCEEEEecCC
Confidence 11111 12568999999876655 6789999988763 22222221 12233346778888 888877665 3
Q ss_pred CCeEEEeeC
Q 038702 145 GGQVYVWTS 153 (154)
Q Consensus 145 d~~i~~wd~ 153 (154)
...|.++.+
T Consensus 265 ~dsI~~f~V 273 (346)
T COG2706 265 HDSIAVFSV 273 (346)
T ss_pred CCeEEEEEE
Confidence 345665543
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.9e-05 Score=57.46 Aligned_cols=145 Identities=14% Similarity=0.161 Sum_probs=85.3
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccc-------------cc--
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN-------------FE-- 65 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~-------------~~-- 65 (154)
+.+..+|.|.+........ ....... .-...|.+++||||+..++..+.++++.+....- +.
T Consensus 91 ~~~~~~Gdi~~~~~~~~~~--~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~ 168 (928)
T PF04762_consen 91 CIALASGDIILVREDPDPD--EDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESK 168 (928)
T ss_pred EEEECCceEEEEEccCCCC--CceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCc
Confidence 4566778888773221110 0033344 4567899999999999999999999888864320 00
Q ss_pred --------cceeE-e---ec------CCC-----CceE----eEEEEEEcCCCcEEEEEcc---C---CeEEEecCCCcc
Q 038702 66 --------NTAMI-H---HN------NQT-----GRWI----SSFRAIWGWDDSCIFIGNM---T---RTVEVISPAQRR 112 (154)
Q Consensus 66 --------~~~~~-~---~~------~~~-----~~~~----~~~~~~~~~~~~~l~~~~~---d---~~i~i~~~~~~~ 112 (154)
....+ + .. .+. ...+ ....+.|-.||.|+++.+- . +.+|||+.+ |+
T Consensus 169 ~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~ 247 (928)
T PF04762_consen 169 HVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GE 247 (928)
T ss_pred eeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ce
Confidence 00000 0 00 000 0000 2346789999999999874 2 579999976 55
Q ss_pred ceeEEeCCCcCCcceEEEecCCCccEEEEEcC---CCeEEEee
Q 038702 113 SVATLQSPYISAIPCRFHAHPHQVGTLAGATG---GGQVYVWT 152 (154)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---d~~i~~wd 152 (154)
+..+.. ........++|-| .|++|++... ...|.+|.
T Consensus 248 L~stSE--~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfE 287 (928)
T PF04762_consen 248 LQSTSE--PVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFE 287 (928)
T ss_pred EEeccc--cCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEe
Confidence 433332 2223335789999 7888887763 23455443
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.9e-07 Score=61.61 Aligned_cols=125 Identities=14% Similarity=0.085 Sum_probs=74.8
Q ss_pred CceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccc----eeEeecCCCCceEeEEEEEEcCCCcEEEEEccC
Q 038702 25 PTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT----AMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMT 100 (154)
Q Consensus 25 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 100 (154)
...+.+|...|+.+.--.+.+.|++++.|++|++|.++..... ........+...+. .+.|-.+.++++ +.|
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~--~igfL~~lr~i~--ScD 803 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIH--DIGFLADLRSIA--SCD 803 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCccc--ceeeeeccceee--ecc
Confidence 3445589999999888778899999999999999998753221 01111112222233 233445556665 458
Q ss_pred CeEEEecCCCccceeEEe-CCCcCCcceEEEecCCCccEEEEE-cCCCeEEEeeC
Q 038702 101 RTVEVISPAQRRSVATLQ-SPYISAIPCRFHAHPHQVGTLAGA-TGGGQVYVWTS 153 (154)
Q Consensus 101 ~~i~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~~wd~ 153 (154)
|.|++||.--++++..+. .+..+....-.+.-..+..+++.| +...+|+++|.
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~Da 858 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDA 858 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeec
Confidence 999999998887776443 222222111122211133444444 67888888874
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.42 E-value=2e-05 Score=55.79 Aligned_cols=130 Identities=15% Similarity=0.084 Sum_probs=82.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|+-|..+|.|++.+.+.. +...+.|... ..+|.++++++.||+|.+-.+-+.+.........+ +
T Consensus 52 ~~~GtH~g~v~~~~~~~~------~~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rp----i 115 (846)
T KOG2066|consen 52 FALGTHRGAVYLTTCQGN------PKTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRP----I 115 (846)
T ss_pred eeeccccceEEEEecCCc------cccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEecCCc----c
Confidence 355777778887776543 2222344433 55799999999999999998887776654433222 1
Q ss_pred eEEEEEEcCC-----CcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWD-----DSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~-----~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
. .++++|+ .+.+++|+..| +.++.-+-.........+.......++.|. +++++-++.+| |++||.
T Consensus 116 k--sial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~---g~lIAWand~G-v~vyd~ 186 (846)
T KOG2066|consen 116 K--SIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR---GNLIAWANDDG-VKVYDT 186 (846)
T ss_pred e--eEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec---CcEEEEecCCC-cEEEec
Confidence 2 4567776 56788999888 777765422222222223333333678885 57888877765 578875
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.1e-06 Score=61.72 Aligned_cols=142 Identities=19% Similarity=0.196 Sum_probs=86.0
Q ss_pred eecCCCcEEEEEccCCCCCCCCCce-eecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 3 TSSTDGTACIWDLRSMATDKPEPTK-VLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 3 ~~~~d~~v~vw~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
+.+..+.|++||.+.+.. +.. ..+|...|..++|+. --..+.+.+.|++|+.||................
T Consensus 175 asshg~~i~vwd~r~gs~----pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~---- 246 (1081)
T KOG0309|consen 175 ASSHGNDIFVWDLRKGST----PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNF---- 246 (1081)
T ss_pred hhccCCceEEEeccCCCc----ceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccC----
Confidence 445667899999998775 443 348999999999977 3456788999999999998754322111111100
Q ss_pred eEEEEEEcCCC--cEEEEEccCCeEEEecCC---------C-ccceeEEeCCCcCCcceEEEecCC---------CccEE
Q 038702 81 SSFRAIWGWDD--SCIFIGNMTRTVEVISPA---------Q-RRSVATLQSPYISAIPCRFHAHPH---------QVGTL 139 (154)
Q Consensus 81 ~~~~~~~~~~~--~~l~~~~~d~~i~i~~~~---------~-~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~l 139 (154)
..+..++-|-| .++.-.-.+..+.+++.+ + .+++.++.+|...+. .+.|-.. ..-.|
T Consensus 247 piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~--eFlWR~r~e~~~d~d~rdfQL 324 (1081)
T KOG0309|consen 247 PIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVL--EFLWRKRKECDGDYDSRDFQL 324 (1081)
T ss_pred cceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHH--HHhhhhcccccCCCCccceeE
Confidence 12233444432 233222222344444433 2 356788888765543 3333221 22369
Q ss_pred EEEcCCCeEEEeeCC
Q 038702 140 AGATGGGQVYVWTSD 154 (154)
Q Consensus 140 ~~~~~d~~i~~wd~~ 154 (154)
++=+.|..+++|-++
T Consensus 325 VTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 325 VTWSKDQTLRLWPID 339 (1081)
T ss_pred EEeecCCceEeeecc
Confidence 999999999999874
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.4e-06 Score=55.89 Aligned_cols=77 Identities=19% Similarity=0.204 Sum_probs=62.0
Q ss_pred cccCCeEEEEEcCCCC-EEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCC-cEEEEEccCCeEEEec
Q 038702 30 SHKRAVHSAYFSPSGS-SLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDD-SCIFIGNMTRTVEVIS 107 (154)
Q Consensus 30 ~~~~~v~~~~~~~~~~-~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~~ 107 (154)
+|...|.+++|+|..+ ++..++.+..|++.|+++......+.... ...+++|.-+. +++..|-..|.|.|||
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~------~~wSC~wDlde~h~IYaGl~nG~VlvyD 264 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYN------QIWSCCWDLDERHVIYAGLQNGMVLVYD 264 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccC------CceeeeeccCCcceeEEeccCceEEEEE
Confidence 7888999999999776 78889999999999999887665554333 34577888765 5777888999999999
Q ss_pred CCCcc
Q 038702 108 PAQRR 112 (154)
Q Consensus 108 ~~~~~ 112 (154)
++..+
T Consensus 265 ~R~~~ 269 (463)
T KOG1645|consen 265 MRQPE 269 (463)
T ss_pred ccCCC
Confidence 98653
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.6e-06 Score=55.12 Aligned_cols=121 Identities=12% Similarity=0.069 Sum_probs=76.5
Q ss_pred cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCC---CceEeEEEEEEcCCC-cEEEEEccCCeEEE
Q 038702 30 SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQT---GRWISSFRAIWGWDD-SCIFIGNMTRTVEV 105 (154)
Q Consensus 30 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i 105 (154)
.|...|.++.|+.+.+.++++ .|-.|.+|+++-......+..-.++ .-.....+..|+|.. ..+..++..|.|++
T Consensus 170 aH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl 248 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL 248 (460)
T ss_pred cceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence 477888999999988888776 6778999998765443222111111 000112245788864 56777888999999
Q ss_pred ecCCCccce------eEE--eCC------CcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 106 ISPAQRRSV------ATL--QSP------YISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 106 ~~~~~~~~~------~~~--~~~------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
-|+++..+. ... .+- ........+.|++ +++++++-+. -++++||.
T Consensus 249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~-ngryIlsRdy-ltvkiwDv 308 (460)
T COG5170 249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSD-NGRYILSRDY-LTVKIWDV 308 (460)
T ss_pred hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcC-CCcEEEEecc-ceEEEEec
Confidence 999853221 111 110 0111235788998 7788887766 48999996
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00017 Score=46.71 Aligned_cols=141 Identities=13% Similarity=0.146 Sum_probs=85.8
Q ss_pred cEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeC-CCeEEEEeccccc-cceeEe------ecCCCCceE
Q 038702 9 TACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSF-DDTIGIWSGVNFE-NTAMIH------HNNQTGRWI 80 (154)
Q Consensus 9 ~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~~~~~~~~~-~~~~~~------~~~~~~~~~ 80 (154)
.|.+|++..+.........+ .-...-+-|.|+|++++.+..++ +++|.+|...... ....+. ..-....
T Consensus 168 ri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~-- 244 (346)
T COG2706 168 RIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTN-- 244 (346)
T ss_pred eEEEEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCC--
Confidence 47888888665433222222 55566789999999998877765 8999999988741 111111 1111111
Q ss_pred eEEEEEEcCCCcEEEEEccC-CeEEEecCCC--ccceeEEeCCCcCCcceEEEecCCCccEEEEEcC-CCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMT-RTVEVISPAQ--RRSVATLQSPYISAIPCRFHAHPHQVGTLAGATG-GGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d-~~i~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~~wd~ 153 (154)
..-.+..+++|++|.++... ..|.+|.+.. +++...-.....+..+..+.++| .+++|+++.+ ...|.+|.+
T Consensus 245 ~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~ 320 (346)
T COG2706 245 WAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINP-SGRFLIAANQKSDNITVFER 320 (346)
T ss_pred ceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCC-CCCEEEEEccCCCcEEEEEE
Confidence 22245679999999887632 3677777653 33222211222333356889999 6777777764 446777754
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.8e-05 Score=54.02 Aligned_cols=109 Identities=14% Similarity=0.128 Sum_probs=78.2
Q ss_pred CeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEcc-----------CCe
Q 038702 34 AVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNM-----------TRT 102 (154)
Q Consensus 34 ~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------d~~ 102 (154)
.=+-+.|||.|.+|++--.-| |.+|--++......+.|... + -+.|||..+||++-+. ...
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~V-----q--~idfSP~EkYLVT~s~~p~~~~~~d~e~~~ 283 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHPGV-----Q--FIDFSPNEKYLVTYSPEPIIVEEDDNEGQQ 283 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCCCc-----e--eeecCCccceEEEecCCccccCcccCCCce
Confidence 446789999999999987776 88998777666666666542 2 3578999999998652 247
Q ss_pred EEEecCCCccceeEEeCCCcC-CcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 103 VEVISPAQRRSVATLQSPYIS-AIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 103 i~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
++|||+++|...+.+...... ..-.-+.|+- ++.+++--.. ..|.+|+
T Consensus 284 l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~-DdKy~Arm~~-~sisIyE 332 (698)
T KOG2314|consen 284 LIIWDIATGLLKRSFPVIKSPYLKWPIFRWSH-DDKYFARMTG-NSISIYE 332 (698)
T ss_pred EEEEEccccchhcceeccCCCccccceEEecc-CCceeEEecc-ceEEEEe
Confidence 999999999988888753222 2213477887 6678776555 4667765
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.8e-05 Score=54.13 Aligned_cols=135 Identities=16% Similarity=0.149 Sum_probs=92.9
Q ss_pred CCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCC------------CEEEEeeCCCeEEEEeccccccceeEeecC
Q 038702 7 DGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSG------------SSLATTSFDDTIGIWSGVNFENTAMIHHNN 74 (154)
Q Consensus 7 d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~ 74 (154)
...|.+-|..+.+. ...+..|...|+.+.|.|.. -.++++...|.|.+||.........+.+..
T Consensus 34 hslV~VVDs~s~q~----iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~ 109 (1062)
T KOG1912|consen 34 HSLVSVVDSRSLQL----IQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSN 109 (1062)
T ss_pred CceEEEEehhhhhh----hhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCC
Confidence 35678888877664 44445788999999998821 156777889999999998877665554433
Q ss_pred CCCceEeEEEEEEcC---CC-cEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEE
Q 038702 75 QTGRWISSFRAIWGW---DD-SCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYV 150 (154)
Q Consensus 75 ~~~~~~~~~~~~~~~---~~-~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~ 150 (154)
. .+. .++|-+ +. ..|++-.....+-+|+..+|+.+-.....+ .+-.++.++|-+.+.+..-+..|.+.+
T Consensus 110 ~---~~q--dl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~--~iLs~f~~DPfd~rh~~~l~s~g~vl~ 182 (1062)
T KOG1912|consen 110 D---SVQ--DLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSH--EILSCFRVDPFDSRHFCVLGSKGFVLS 182 (1062)
T ss_pred c---chh--heeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCC--cceeeeeeCCCCcceEEEEccCceEEE
Confidence 2 122 334433 34 466666777899999999998776554222 332568888888888888777777765
Q ss_pred ee
Q 038702 151 WT 152 (154)
Q Consensus 151 wd 152 (154)
-+
T Consensus 183 ~~ 184 (1062)
T KOG1912|consen 183 CK 184 (1062)
T ss_pred Ee
Confidence 43
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00013 Score=45.51 Aligned_cols=134 Identities=10% Similarity=0.048 Sum_probs=79.4
Q ss_pred CCCcEEEEEccCCCCCCCCCceeecccCCeEEEE--EcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEE
Q 038702 6 TDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAY--FSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSF 83 (154)
Q Consensus 6 ~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (154)
++|+|..+|.++++. .-+. .......... ..+++..+++++.++.+..+|..+++..-........... .
T Consensus 1 ~~g~l~~~d~~tG~~----~W~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~-- 72 (238)
T PF13360_consen 1 DDGTLSALDPRTGKE----LWSY-DLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA-P-- 72 (238)
T ss_dssp -TSEEEEEETTTTEE----EEEE-ECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG-E--
T ss_pred CCCEEEEEECCCCCE----EEEE-ECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce-e--
Confidence 468899999987763 2222 2211122212 2335667777789999999999888766544432221111 0
Q ss_pred EEEEcCCCcEEEEEccCCeEEEecCCCccceeEE-eCCCc--C-CcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 84 RAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATL-QSPYI--S-AIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 84 ~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~-~~~~~--~-~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
...+..++.++.++.++.+|.++++.+-.. ..... . ......... +..++.+..++.|..+|++
T Consensus 73 ----~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~l~~~d~~ 140 (238)
T PF13360_consen 73 ----VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD---GDRLYVGTSSGKLVALDPK 140 (238)
T ss_dssp ----EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE---TTEEEEEETCSEEEEEETT
T ss_pred ----eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEe---cCEEEEEeccCcEEEEecC
Confidence 113555566667889999999999988774 32211 1 111223332 4667777778888888863
|
... |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00019 Score=48.84 Aligned_cols=111 Identities=6% Similarity=-0.042 Sum_probs=67.0
Q ss_pred CCeEEEEEcCCCCE-EEEeeC---CCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEE-ccC--CeEEE
Q 038702 33 RAVHSAYFSPSGSS-LATTSF---DDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIG-NMT--RTVEV 105 (154)
Q Consensus 33 ~~v~~~~~~~~~~~-l~~~~~---d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d--~~i~i 105 (154)
+......|+|+|+. ++..+. +..|.++|+.+++...+..... ......|+|||+.++.. +.+ ..|.+
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g------~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 261 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQG------MLVVSDVSKDGSKLLLTMAPKGQPDIYL 261 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCC------cEEeeEECCCCCEEEEEEccCCCcEEEE
Confidence 37789999999985 554433 3468888988776655443211 12245699999866543 333 46788
Q ss_pred ecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEc-CCC--eEEEeeC
Q 038702 106 ISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT-GGG--QVYVWTS 153 (154)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~--~i~~wd~ 153 (154)
+++.+++. ..+..... ......|+| +++.|+..+ ..+ .|++.|+
T Consensus 262 ~dl~~g~~-~~LT~~~~--~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl 308 (419)
T PRK04043 262 YDTNTKTL-TQITNYPG--IDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKL 308 (419)
T ss_pred EECCCCcE-EEcccCCC--ccCccEECC-CCCEEEEEECCCCCceEEEEEC
Confidence 88877764 33432221 123467999 666555444 333 4666654
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.31 E-value=8.2e-06 Score=56.26 Aligned_cols=81 Identities=11% Similarity=0.100 Sum_probs=63.7
Q ss_pred ccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCC
Q 038702 31 HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQ 110 (154)
Q Consensus 31 ~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 110 (154)
-...|..+.|+|.-.++|.+..+|.+.+..+. .++...+..++. .+. -+.+|.|||+.|+.|-.||+|++.|++.
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~---~v~-~sL~W~~DGkllaVg~kdG~I~L~Dve~ 93 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGE---NVT-ASLCWRPDGKLLAVGFKDGTIRLHDVEK 93 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCC---ccc-eeeeecCCCCEEEEEecCCeEEEEEccC
Confidence 45568889999999999999999999998887 444433332221 112 3678999999999999999999999999
Q ss_pred ccceeE
Q 038702 111 RRSVAT 116 (154)
Q Consensus 111 ~~~~~~ 116 (154)
+..+..
T Consensus 94 ~~~l~~ 99 (665)
T KOG4640|consen 94 GGRLVS 99 (665)
T ss_pred CCceec
Confidence 887766
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.8e-05 Score=53.80 Aligned_cols=71 Identities=15% Similarity=0.314 Sum_probs=54.8
Q ss_pred cCCeEEEEEcCCCCEEEEeeC---CCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEcc------CCe
Q 038702 32 KRAVHSAYFSPSGSSLATTSF---DDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNM------TRT 102 (154)
Q Consensus 32 ~~~v~~~~~~~~~~~l~~~~~---d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------d~~ 102 (154)
.++=.++-|+|.|++++.++. -|.+-+||+.+.+.+..+...+ +.-+.|+|||++++|+.. |+.
T Consensus 311 egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~-------tt~~eW~PdGe~flTATTaPRlrvdNg 383 (566)
T KOG2315|consen 311 EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN-------TTVFEWSPDGEYFLTATTAPRLRVDNG 383 (566)
T ss_pred CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC-------ceEEEEcCCCcEEEEEeccccEEecCC
Confidence 456678999999999888775 5789999999866665444333 124689999999999874 677
Q ss_pred EEEecCC
Q 038702 103 VEVISPA 109 (154)
Q Consensus 103 i~i~~~~ 109 (154)
++||+..
T Consensus 384 ~Kiwhyt 390 (566)
T KOG2315|consen 384 IKIWHYT 390 (566)
T ss_pred eEEEEec
Confidence 8999875
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.29 E-value=6.4e-05 Score=51.52 Aligned_cols=133 Identities=12% Similarity=0.181 Sum_probs=84.1
Q ss_pred EEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeC---CCeEEEEeccc-cccceeEeecCCCCceEeEEEE
Q 038702 10 ACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSF---DDTIGIWSGVN-FENTAMIHHNNQTGRWISSFRA 85 (154)
Q Consensus 10 v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 85 (154)
+.|+.++.... +.....-...|...+|-|.|+.|++-+. ..++.+|.+++ ............ ..+-.+
T Consensus 427 ~eIfrireKdI----pve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk----~~~N~v 498 (698)
T KOG2314|consen 427 LEIFRIREKDI----PVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK----KFANTV 498 (698)
T ss_pred EEEEEeeccCC----CceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc----cccceE
Confidence 45566655443 4555567889999999999998877554 35688888874 222222211111 112256
Q ss_pred EEcCCCcEEEEEc---cCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcC------CCeEEEeeC
Q 038702 86 IWGWDDSCIFIGN---MTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATG------GGQVYVWTS 153 (154)
Q Consensus 86 ~~~~~~~~l~~~~---~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------d~~i~~wd~ 153 (154)
.|+|.|++++.+. ..|.+.++|..-..+..+-...| .....+.|+| .|+|+++++. |.--++|+.
T Consensus 499 fwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh--~~at~veWDP-tGRYvvT~ss~wrhk~d~GYri~tf 572 (698)
T KOG2314|consen 499 FWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH--FAATEVEWDP-TGRYVVTSSSSWRHKVDNGYRIFTF 572 (698)
T ss_pred EEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc--cccccceECC-CCCEEEEeeehhhhccccceEEEEe
Confidence 7999999988764 56889999987433322222122 2335789999 8899999875 334455554
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.6e-06 Score=35.84 Aligned_cols=32 Identities=44% Similarity=0.656 Sum_probs=29.4
Q ss_pred ecccCCeEEEEEcCCCCEEEEeeCCCeEEEEe
Q 038702 29 LSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60 (154)
Q Consensus 29 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~ 60 (154)
..|...|.+++|++.++.+++++.|+.+++|+
T Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 9 KGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 36888999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00016 Score=50.79 Aligned_cols=67 Identities=15% Similarity=0.110 Sum_probs=48.8
Q ss_pred EEEEcCCCcEEEEEc-cCCeEEEecCCCccc------------eeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEE
Q 038702 84 RAIWGWDDSCIFIGN-MTRTVEVISPAQRRS------------VATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYV 150 (154)
Q Consensus 84 ~~~~~~~~~~l~~~~-~d~~i~i~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~ 150 (154)
.+.++|||+++++++ .+.++.|.|+...+. ..+.. .+.-+...+|++ ++..+.+-.-|..|.-
T Consensus 325 GV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve---vGlGPLHTaFDg-~G~aytslf~dsqv~k 400 (635)
T PRK02888 325 GVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE---LGLGPLHTAFDG-RGNAYTTLFLDSQIVK 400 (635)
T ss_pred ceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec---cCCCcceEEECC-CCCEEEeEeecceeEE
Confidence 467899999887766 578999999987553 22222 122235678888 7788888889999999
Q ss_pred eeCC
Q 038702 151 WTSD 154 (154)
Q Consensus 151 wd~~ 154 (154)
||++
T Consensus 401 wn~~ 404 (635)
T PRK02888 401 WNIE 404 (635)
T ss_pred EehH
Confidence 9974
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.19 E-value=9.7e-07 Score=60.88 Aligned_cols=141 Identities=11% Similarity=0.085 Sum_probs=86.6
Q ss_pred CCCcEEEEEccCCCCCCCCCceeec-ccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccc-eeEeecCCCCceEeEE
Q 038702 6 TDGTACIWDLRSMATDKPEPTKVLS-HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT-AMIHHNNQTGRWISSF 83 (154)
Q Consensus 6 ~d~~v~vw~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 83 (154)
.|..+.|||+.+.-..+.....+.+ ......+++|-.+.+++.+|.....++++|++..... ..+......+
T Consensus 127 nds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG------ 200 (783)
T KOG1008|consen 127 NDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQG------ 200 (783)
T ss_pred ccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhccc------
Confidence 3567999999876332222333333 4456668899888889999999999999999843322 1111111111
Q ss_pred EEEEcC-CCcEEEEEccCCeEEEecC-CCc-cceeEEeCCCc--CCcceEEEecCCCccEEEEEcC-CCeEEEeeCC
Q 038702 84 RAIWGW-DDSCIFIGNMTRTVEVISP-AQR-RSVATLQSPYI--SAIPCRFHAHPHQVGTLAGATG-GGQVYVWTSD 154 (154)
Q Consensus 84 ~~~~~~-~~~~l~~~~~d~~i~i~~~-~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~-d~~i~~wd~~ 154 (154)
....| .+.|+++.. |+.|.+||. +.- .++..+..... ......++|+|....++++... .++|+++|+.
T Consensus 201 -~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 201 -ITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred -ceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 12345 567776655 999999993 322 22322221111 1123678999977777777775 4788998863
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00034 Score=46.34 Aligned_cols=93 Identities=19% Similarity=0.105 Sum_probs=67.3
Q ss_pred CeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEcc----------CCeEEEecCCCccceeEEeCCCc-
Q 038702 54 DTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNM----------TRTVEVISPAQRRSVATLQSPYI- 122 (154)
Q Consensus 54 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------d~~i~i~~~~~~~~~~~~~~~~~- 122 (154)
++|.+.|..+.+....+...... . ...+|+++.++.+.. +..|.+||..+.+.+..+..+..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P----~---~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p 99 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLP----N---PVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP 99 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCC----c---eeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc
Confidence 88999999988776655432211 1 126899998777665 67999999999999988875332
Q ss_pred ----CCcceEEEecCCCccEEEEEc-C-CCeEEEeeCC
Q 038702 123 ----SAIPCRFHAHPHQVGTLAGAT-G-GGQVYVWTSD 154 (154)
Q Consensus 123 ----~~~~~~~~~~~~~~~~l~~~~-~-d~~i~~wd~~ 154 (154)
......++++| ++++|.... . +..|.+.|++
T Consensus 100 ~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~VvD~~ 136 (352)
T TIGR02658 100 RFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVGVVDLE 136 (352)
T ss_pred hhhccCccceEEECC-CCCEEEEecCCCCCEEEEEECC
Confidence 23335788999 777777655 4 7889998873
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.13 E-value=8e-06 Score=52.07 Aligned_cols=146 Identities=12% Similarity=0.079 Sum_probs=87.2
Q ss_pred ecCCCcEEEEEccCCCC----CCCCCceeecccCCeEEEEEcCC-CCEEEEeeCCCeEEEEeccccccc----eeE----
Q 038702 4 SSTDGTACIWDLRSMAT----DKPEPTKVLSHKRAVHSAYFSPS-GSSLATTSFDDTIGIWSGVNFENT----AMI---- 70 (154)
Q Consensus 4 ~~~d~~v~vw~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~~~~~~~~~~~----~~~---- 70 (154)
.++|-.|.+|++..... ....+.........|++..|+|. .+.|..++..|.|++-|++..... ..+
T Consensus 189 SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~ 268 (460)
T COG5170 189 SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTI 268 (460)
T ss_pred eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhcc
Confidence 45667788998865432 00011112233567899999994 567778888999999999853221 000
Q ss_pred ---eecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCC-ccceeEEeCCC-----------cCCc--ceEEEecC
Q 038702 71 ---HHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQ-RRSVATLQSPY-----------ISAI--PCRFHAHP 133 (154)
Q Consensus 71 ---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~-~~~~~~~~~~~-----------~~~~--~~~~~~~~ 133 (154)
.+..-.+.......+.|+++|+++++-. --++++||.+. ..++.++..|. ...+ ...+.++.
T Consensus 269 D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSg 347 (460)
T COG5170 269 DGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSG 347 (460)
T ss_pred CcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecC
Confidence 0100011111223568999999998765 34899999984 45677765431 1111 12355666
Q ss_pred CCccEEEEEcCCCeEEEe
Q 038702 134 HQVGTLAGATGGGQVYVW 151 (154)
Q Consensus 134 ~~~~~l~~~~~d~~i~~w 151 (154)
+...+++|++.....+|
T Consensus 348 -d~~~v~sgsy~NNfgiy 364 (460)
T COG5170 348 -DDKHVLSGSYSNNFGIY 364 (460)
T ss_pred -Ccccccccccccceeee
Confidence 55777888876665554
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00023 Score=52.90 Aligned_cols=135 Identities=10% Similarity=0.094 Sum_probs=79.2
Q ss_pred CcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCCCEEEEeeC---CCeEEEEeccccccceeEeecCCCCceEeEE
Q 038702 8 GTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATTSF---DDTIGIWSGVNFENTAMIHHNNQTGRWISSF 83 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~---d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (154)
..++||+-+ +. ..... .-.+--.+++|.|.|+++++.-. ...|.+|.-...+...+.-...... ..+.
T Consensus 237 R~iRVy~Re-G~-----L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~--~~v~ 308 (928)
T PF04762_consen 237 RVIRVYSRE-GE-----LQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEE--EKVI 308 (928)
T ss_pred eEEEEECCC-ce-----EEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCC--ceee
Confidence 567888764 22 11111 22233347899999999988765 2335455433222222111111122 2345
Q ss_pred EEEEcCCCcEEEEEccCCeEEEecCCCcc--ceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 84 RAIWGWDDSCIFIGNMTRTVEVISPAQRR--SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 84 ~~~~~~~~~~l~~~~~d~~i~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
.+.|++++..|+....|. |.+|...... +.+.+.-...... ..+.|+|.++..|...+.+|.+..++
T Consensus 309 ~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~-~~~~Wdpe~p~~L~v~t~~g~~~~~~ 377 (928)
T PF04762_consen 309 ELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESV-NFVKWDPEKPLRLHVLTSNGQYEIYD 377 (928)
T ss_pred EEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCC-CceEECCCCCCEEEEEecCCcEEEEE
Confidence 789999999999977665 9999887654 2233332222222 34899998888888888777766554
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00061 Score=50.91 Aligned_cols=141 Identities=11% Similarity=0.133 Sum_probs=82.6
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCCCEEEEeeCCCeEEEEecc----ccccc---------
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV----NFENT--------- 67 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~----~~~~~--------- 67 (154)
+.+..+|.|.+-|..+.. .... .-...|.+++|+|+.+.++..+..+++.+..-. .-+..
T Consensus 84 ~v~~~~G~iilvd~et~~------~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk 157 (1265)
T KOG1920|consen 84 CVITALGDIILVDPETLE------LEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSK 157 (1265)
T ss_pred EEEecCCcEEEEcccccc------eeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccc
Confidence 345667777777665543 2333 456789999999999999999888888775431 00000
Q ss_pred -eeEeecC------------------CCCc-------eEeEEEEEEcCCCcEEEEEc-----cCCeEEEecCCCccceeE
Q 038702 68 -AMIHHNN------------------QTGR-------WISSFRAIWGWDDSCIFIGN-----MTRTVEVISPAQRRSVAT 116 (154)
Q Consensus 68 -~~~~~~~------------------~~~~-------~~~~~~~~~~~~~~~l~~~~-----~d~~i~i~~~~~~~~~~~ 116 (154)
...+... .... .-.-..+.|..||+++++.. ..++|++||.+ +.+ ..
T Consensus 158 ~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~L-ns 235 (1265)
T KOG1920|consen 158 FVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GAL-NS 235 (1265)
T ss_pred cceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chh-hc
Confidence 0000000 0000 00111378999999999843 33799999987 432 22
Q ss_pred EeCCCcCCcceEEEecCCCccEEEEEc---CCCeEEEee
Q 038702 117 LQSPYISAIPCRFHAHPHQVGTLAGAT---GGGQVYVWT 152 (154)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~l~~~~---~d~~i~~wd 152 (154)
...+. ......++|-| .|..+++-. .|+.|.++.
T Consensus 236 ~se~~-~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffE 272 (1265)
T KOG1920|consen 236 TSEPV-EGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFE 272 (1265)
T ss_pred ccCcc-cccccceeecC-CCCeEeeeeecCCCCcEEEEe
Confidence 22122 22235688999 677776653 455677664
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00093 Score=48.32 Aligned_cols=138 Identities=12% Similarity=0.109 Sum_probs=79.1
Q ss_pred cEEEEEccCCCCCC-CCCc---eeec-----ccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccc---cccceeEeecCCC
Q 038702 9 TACIWDLRSMATDK-PEPT---KVLS-----HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN---FENTAMIHHNNQT 76 (154)
Q Consensus 9 ~v~vw~~~~~~~~~-~~~~---~~~~-----~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~---~~~~~~~~~~~~~ 76 (154)
.+++|++....... +.+. .... .+.++.+++.+.+-+.++.|-.+|.|..+.=.- ......+.+..
T Consensus 93 llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~-- 170 (933)
T KOG2114|consen 93 LLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRG-- 170 (933)
T ss_pred EEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccC--
Confidence 58999998764433 3333 3333 356789999999999999999999998875321 11122222322
Q ss_pred CceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 77 GRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+..+. .+.+..++..++.......|.+|.+....+......+++... .+..+++..++++++++ ..+.+||.
T Consensus 171 ~~pIT--gL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~l-nCss~~~~t~qfIca~~--e~l~fY~s 242 (933)
T KOG2114|consen 171 KEPIT--GLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISL-NCSSFSDGTYQFICAGS--EFLYFYDS 242 (933)
T ss_pred CCCce--eeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccc-eeeecCCCCccEEEecC--ceEEEEcC
Confidence 22333 345666666544445566789998874332333222333333 45566664444444433 35666664
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00074 Score=42.49 Aligned_cols=125 Identities=10% Similarity=0.005 Sum_probs=76.9
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEe
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWIS 81 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (154)
+.|+..+.+.--|..+++... +. --...|-+-+.- -|++++.|+..|.+.+.+..+++....+......+
T Consensus 27 ~igSHs~~~~avd~~sG~~~W----e~-ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk---- 96 (354)
T KOG4649|consen 27 VIGSHSGIVIAVDPQSGNLIW----EA-ILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVK---- 96 (354)
T ss_pred EEecCCceEEEecCCCCcEEe----eh-hhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhc----
Confidence 446666666666666654311 11 111222221111 47789999999999999999987665544332211
Q ss_pred EEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEE
Q 038702 82 SFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTL 139 (154)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 139 (154)
.+....+++..+..++.|++.+..|.++..++...+-. +.+..+.+..|.++.++
T Consensus 97 -~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcg--G~~f~sP~i~~g~~sly 151 (354)
T KOG4649|consen 97 -VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCG--GGTFVSPVIAPGDGSLY 151 (354)
T ss_pred -cceEEcCCCceEEEecCCCcEEEecccccceEEecccC--CceeccceecCCCceEE
Confidence 13456789999999999999999999998888776532 22223444555333333
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.07 E-value=8.8e-05 Score=53.68 Aligned_cols=131 Identities=18% Similarity=0.174 Sum_probs=84.9
Q ss_pred ecCCCcEEEEEccCCCCCCCCCceeec-ccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe-ecCCCCceEe
Q 038702 4 SSTDGTACIWDLRSMATDKPEPTKVLS-HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQTGRWIS 81 (154)
Q Consensus 4 ~~~d~~v~vw~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~~~ 81 (154)
|+....+..+|+++.+ ..+... ..+.|.-++. +++.+.+|...|+|.+-|..+.+....+. |.. .+.
T Consensus 153 Gg~Q~~li~~Dl~~~~-----e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~----siS 221 (1118)
T KOG1275|consen 153 GGLQEKLIHIDLNTEK-----ETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSG----SIS 221 (1118)
T ss_pred cchhhheeeeecccce-----eeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeecccc----cee
Confidence 3334445556666544 222221 2223555554 77899999999999999999887766554 322 222
Q ss_pred EEEEEEcCCCcEEEEEcc---------CCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 82 SFRAIWGWDDSCIFIGNM---------TRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~---------d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
.|+-.|+.|++++. |..|++||++..+.+..+.-+.... -+.|+|.-...++..+.-|...+-|
T Consensus 222 ----DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~---flrf~Psl~t~~~V~S~sGq~q~vd 294 (1118)
T KOG1275|consen 222 ----DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQ---FLRFHPSLTTRLAVTSQSGQFQFVD 294 (1118)
T ss_pred ----eeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCch---hhhhcccccceEEEEecccceeecc
Confidence 46678999999873 5678999999888776665443332 2567776667777777777665544
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.9e-05 Score=51.85 Aligned_cols=145 Identities=15% Similarity=0.122 Sum_probs=92.7
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeC-CCeEEEEeccccccceeEeecCCCCceE
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSF-DDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
.+++.||.++.|--..-.... -...+..|.+.|.+++.+.++.++.+.+. |..++++|+++........-....+
T Consensus 24 iqASlDGh~KFWkKs~isGvE-fVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg--- 99 (558)
T KOG0882|consen 24 IQASLDGHKKFWKKSRISGVE-FVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPG--- 99 (558)
T ss_pred EeeecchhhhhcCCCCcccee-ehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCC---
Confidence 578999999999865422100 02233478899999999999999999777 9999999998866553332211111
Q ss_pred eEEEEEEcCCC--cEEE-EEccCCeEEEecCCCcc-ceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDD--SCIF-IGNMTRTVEVISPAQRR-SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~--~~l~-~~~~d~~i~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
......++.. ..++ ....++.+.++|-.... +...+..-+...+ ..+.+.| .+..+++....|.|..|..
T Consensus 100 -~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV-~~i~y~q-a~Ds~vSiD~~gmVEyWs~ 173 (558)
T KOG0882|consen 100 -FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPV-KKIRYNQ-AGDSAVSIDISGMVEYWSA 173 (558)
T ss_pred -ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCce-EEEEeec-cccceeeccccceeEeecC
Confidence 0111122221 1333 33477899999987543 3334443333333 4567777 6678888888899999975
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00064 Score=45.65 Aligned_cols=135 Identities=9% Similarity=0.029 Sum_probs=78.0
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeE-EEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVH-SAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
+.++.++.|.-+|..+++. .-+.. ....+. ... .++..++.++.++.+..+|..+++..-....... +
T Consensus 69 ~v~~~~g~v~a~d~~tG~~----~W~~~-~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~----~ 137 (377)
T TIGR03300 69 YAADADGTVVALDAETGKR----LWRVD-LDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSE----V 137 (377)
T ss_pred EEECCCCeEEEEEccCCcE----eeeec-CCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCce----e
Confidence 4567788888888877764 11111 111111 112 2567888888999999999988776543322111 1
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCC---cceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISA---IPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.. .... .+..++.++.++.++.+|.++++.+-......... ........ + ..++.+..++.+..+|+
T Consensus 138 ~~-~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~ 207 (377)
T TIGR03300 138 LS-PPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDL 207 (377)
T ss_pred ec-CCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEc
Confidence 10 0011 24567777889999999999998776655322110 00111121 2 35667777788877775
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.1e-06 Score=59.28 Aligned_cols=143 Identities=16% Similarity=0.244 Sum_probs=89.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC-CCCEEEEee----CCCeEEEEecccccc-ceeEeec-
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP-SGSSLATTS----FDDTIGIWSGVNFEN-TAMIHHN- 73 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~----~d~~v~~~~~~~~~~-~~~~~~~- 73 (154)
++.|..+|.|-+-.++..... ....+.++..+.++++|++ |.+.|++|- .|..+.+||+.+.-. +......
T Consensus 73 lavG~atG~I~l~s~r~~hdS--s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs 150 (783)
T KOG1008|consen 73 LAVGSATGNISLLSVRHPHDS--SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFS 150 (783)
T ss_pred hhhccccCceEEeecCCcccc--cceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccc
Confidence 467888899999888764431 1222338889999999999 566777763 266799999987521 1111000
Q ss_pred CCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCc-cceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 74 NQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQR-RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
........ .++|-.+.+++++|...+.++++|++.. .....+... .+ ..+...|-.++++++-. ||.|-+||
T Consensus 151 ~~~l~gqn--s~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk--~v--qG~tVdp~~~nY~cs~~-dg~iAiwD 223 (783)
T KOG1008|consen 151 SSTLDGQN--SVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTK--YV--QGITVDPFSPNYFCSNS-DGDIAIWD 223 (783)
T ss_pred cccccCcc--ccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhh--hc--ccceecCCCCCceeccc-cCceeecc
Confidence 01111112 4567778889999999999999999843 222222211 11 12344444557887655 99999999
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00013 Score=49.41 Aligned_cols=112 Identities=13% Similarity=0.089 Sum_probs=76.7
Q ss_pred ccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccC----------
Q 038702 31 HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMT---------- 100 (154)
Q Consensus 31 ~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------- 100 (154)
..-++...++||.|.+|++....+ |.+|.-........+.+.. +..+.|+|.++||.+=+..
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~~~~-------V~~~~fSP~~kYL~tw~~~pi~~pe~e~s 102 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFRHPD-------VKYLDFSPNEKYLVTWSREPIIEPEIEIS 102 (561)
T ss_pred cCcchhheeecCcchheehhhccc-eEEccccchhheeeeecCC-------ceecccCcccceeeeeccCCccChhhccC
Confidence 566889999999999999887666 8889887766555555543 2345789999999885433
Q ss_pred -----CeEEEecCCCccceeEEeCCCcCCcce-EEEecCCCccEEEEEcCCCeEEEee
Q 038702 101 -----RTVEVISPAQRRSVATLQSPYISAIPC-RFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 101 -----~~i~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
+.+.+||+.++..+..+.........+ -+.|+- +..+.+-- ....+++++
T Consensus 103 p~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~-~D~y~ARv-v~~sl~i~e 158 (561)
T COG5354 103 PFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSI-DDKYVARV-VGSSLYIHE 158 (561)
T ss_pred CccccCceeEEeccCceeEeeccccCCcccccceeeeee-cchhhhhh-ccCeEEEEe
Confidence 359999999999998888655542222 456665 33444322 233555555
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0011 Score=44.86 Aligned_cols=133 Identities=14% Similarity=0.061 Sum_probs=77.4
Q ss_pred eecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeE
Q 038702 3 TSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISS 82 (154)
Q Consensus 3 ~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (154)
.++.+|.+..+|..+++... +. ... ....+. ..+..++.++.++.+..+|..+++..-....... . ...
T Consensus 261 ~~~~~g~l~ald~~tG~~~W----~~-~~~-~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~-~~~- 329 (394)
T PRK11138 261 ALAYNGNLVALDLRSGQIVW----KR-EYG-SVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLH-R-LLT- 329 (394)
T ss_pred EEEcCCeEEEEECCCCCEEE----ee-cCC-CccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCC-C-ccc-
Confidence 44567777777777665311 11 111 111111 2466778888899999999987754322111100 0 000
Q ss_pred EEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 83 FRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 83 ~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.... .+.+++.++.+|.++..|..+++.+...+....... ...... +..|..++.||.++.+++
T Consensus 330 -sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~-s~P~~~---~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 330 -APVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFL-SEPVVA---DDKLLIQARDGTVYAITR 393 (394)
T ss_pred -CCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcce-eCCEEE---CCEEEEEeCCceEEEEeC
Confidence 0011 256778889999999999999998877654322222 222222 347888899999988765
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.98 E-value=6.9e-05 Score=51.97 Aligned_cols=70 Identities=13% Similarity=0.056 Sum_probs=58.9
Q ss_pred EEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 82 SFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
...+.|+|.-..+|++..+|.+-+..+. .+.+-++.-+...+. .+++|.| +|..|+.|-.||+|++.|+.
T Consensus 23 i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~-~sL~W~~-DGkllaVg~kdG~I~L~Dve 92 (665)
T KOG4640|consen 23 IKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVT-ASLCWRP-DGKLLAVGFKDGTIRLHDVE 92 (665)
T ss_pred eEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccc-eeeeecC-CCCEEEEEecCCeEEEEEcc
Confidence 3467899999999999999999998887 666777765555554 6899999 89999999999999999863
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00021 Score=47.17 Aligned_cols=61 Identities=10% Similarity=0.053 Sum_probs=47.9
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCC-CEEEEeeCCCeEEEEeccccccc
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSG-SSLATTSFDDTIGIWSGVNFENT 67 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~~~~~~~~~~~ 67 (154)
..++.+.+|+|.|+++... .....-...+.+++|.-+. +.+++|...|.|.+||++..+..
T Consensus 210 ~~asl~nkiki~dlet~~~-----vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~ 271 (463)
T KOG1645|consen 210 GLASLGNKIKIMDLETSCV-----VSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGP 271 (463)
T ss_pred eeeccCceEEEEeccccee-----eeheeccCCceeeeeccCCcceeEEeccCceEEEEEccCCCch
Confidence 4578899999999998763 3333333889999998854 57778888999999999987655
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0013 Score=41.15 Aligned_cols=110 Identities=12% Similarity=0.050 Sum_probs=66.6
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE-eecCCCCceE
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI-HHNNQTGRWI 80 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~-~~~~~~~~~~ 80 (154)
++++.++.+..||..+++. .-+.. ....+.... ...+..++.++.++.+..+|..+++..... ....+.....
T Consensus 40 ~~~~~~~~l~~~d~~tG~~----~W~~~-~~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~ 113 (238)
T PF13360_consen 40 YVASGDGNLYALDAKTGKV----LWRFD-LPGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVR 113 (238)
T ss_dssp EEEETTSEEEEEETTTSEE----EEEEE-CSSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB
T ss_pred EEEcCCCEEEEEECCCCCE----EEEee-cccccccee-eecccccccccceeeeEecccCCcceeeeeccccccccccc
Confidence 4556888999999887763 22221 122111111 224556677778889999999888876553 2221111101
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQS 119 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~ 119 (154)
... .....+..++.+..++.|..+|+++|+.+-....
T Consensus 114 ~~~--~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~ 150 (238)
T PF13360_consen 114 SSS--SPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV 150 (238)
T ss_dssp --S--EEEEETTEEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred ccc--CceEecCEEEEEeccCcEEEEecCCCcEEEEeec
Confidence 111 1122377788888899999999999998777765
|
... |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00084 Score=45.79 Aligned_cols=122 Identities=16% Similarity=0.104 Sum_probs=69.5
Q ss_pred CcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEe-eCCCe--EEEEeccccccceeEeecCCCCceEeEEE
Q 038702 8 GTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATT-SFDDT--IGIWSGVNFENTAMIHHNNQTGRWISSFR 84 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
..+.++++..++. .......+.-..-+|+|+|++++.. ..||. |.+.|+............. +.. .
T Consensus 218 ~~i~~~~l~~g~~-----~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~g-----i~~-~ 286 (425)
T COG0823 218 PRIYYLDLNTGKR-----PVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFG-----INT-S 286 (425)
T ss_pred ceEEEEeccCCcc-----ceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCc-----ccc-C
Confidence 3577778877653 2222333444566899999977665 45665 5556776666433221111 111 4
Q ss_pred EEEcCCCcEEEEEc-cCC--eEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcC
Q 038702 85 AIWGWDDSCIFIGN-MTR--TVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATG 144 (154)
Q Consensus 85 ~~~~~~~~~l~~~~-~d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 144 (154)
..|+|+|++++..+ ..| .|.+++...... ..+....... ....|+| ++.+++..+.
T Consensus 287 Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~--~~p~~Sp-dG~~i~~~~~ 345 (425)
T COG0823 287 PSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGN--SNPVWSP-DGDKIVFESS 345 (425)
T ss_pred ccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCC--cCccCCC-CCCEEEEEec
Confidence 56899999887665 344 366667665554 2332222222 2467888 7787776664
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00015 Score=52.46 Aligned_cols=59 Identities=19% Similarity=0.223 Sum_probs=48.5
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN 63 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~ 63 (154)
|+.|-.-|.+.+|...+.+. ......|+.+|..+.|||+|..++++..-|.+.+|...-
T Consensus 74 La~gwe~g~~~v~~~~~~e~----htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 74 LAQGWEMGVSDVQKTNTTET----HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred HhhccccceeEEEecCCcee----eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 45677788899998876553 233348999999999999999999999999999998763
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.89 E-value=7.8e-05 Score=31.70 Aligned_cols=37 Identities=22% Similarity=0.303 Sum_probs=26.9
Q ss_pred ceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 113 SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
++..+..+.... .++.+++ .+.++++++.|+.+++||
T Consensus 4 ~~~~~~~~~~~i--~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPV--TSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCce--eEEEECC-CCCEEEEecCCCeEEEcC
Confidence 344454443332 5788888 568999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0022 Score=40.44 Aligned_cols=115 Identities=11% Similarity=0.081 Sum_probs=69.2
Q ss_pred cCCeEEEEEcCCCCEEEEeeCC--------CeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEE-EEccCCe
Q 038702 32 KRAVHSAYFSPSGSSLATTSFD--------DTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIF-IGNMTRT 102 (154)
Q Consensus 32 ~~~v~~~~~~~~~~~l~~~~~d--------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~ 102 (154)
....+.+++.|+|++.++.... |.+..++.. .+......... ..-.++|+|+++.|+ +-+..+.
T Consensus 85 ~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~------~pNGi~~s~dg~~lyv~ds~~~~ 157 (246)
T PF08450_consen 85 FNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLG------FPNGIAFSPDGKTLYVADSFNGR 157 (246)
T ss_dssp TEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEES------SEEEEEEETTSSEEEEEETTTTE
T ss_pred cCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcc------cccceEECCcchheeecccccce
Confidence 3567899999999977776543 456666666 33222222211 122568999998665 5677788
Q ss_pred EEEecCCCccc-e---eEE-eCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 103 VEVISPAQRRS-V---ATL-QSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 103 i~i~~~~~~~~-~---~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
|..+++..... + ..+ ........+-.++++. ++++.++....+.|.++|.+
T Consensus 158 i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~-~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 158 IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS-DGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT-TS-EEEEEETTTEEEEEETT
T ss_pred eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC-CCCEEEEEcCCCEEEEECCC
Confidence 99888863221 1 222 1112222245688888 77888887788899998864
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00081 Score=47.50 Aligned_cols=118 Identities=11% Similarity=0.015 Sum_probs=82.1
Q ss_pred ccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCC
Q 038702 31 HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQ 110 (154)
Q Consensus 31 ~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 110 (154)
+...|.--+++..+.+++.|+.-|.+.+|+-..+......... .++ .......+++..+++.|+..|.|-++.+..
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~-~~~---~~~~~~vs~~e~lvAagt~~g~V~v~ql~~ 107 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEG-ATG---ITCVRSVSSVEYLVAAGTASGRVSVFQLNK 107 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccC-ccc---eEEEEEecchhHhhhhhcCCceEEeehhhc
Confidence 4555555667778999999999999999997776654433211 111 223456788889999999999999998765
Q ss_pred ccc--eeEEeCCCc--CCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 111 RRS--VATLQSPYI--SAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 111 ~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
..+ ...+...+. +...++++|++ ++..+.+|...|+|.+-.+
T Consensus 108 ~~p~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L 153 (726)
T KOG3621|consen 108 ELPRDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTEL 153 (726)
T ss_pred cCCCcceeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEe
Confidence 322 111111112 44457899999 8899999999999887554
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00015 Score=53.34 Aligned_cols=95 Identities=14% Similarity=0.122 Sum_probs=66.1
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe-ecCCCCceE
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQTGRWI 80 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~~ 80 (154)
+.|+..|.+-..|+..+-.. ..+-..-.++|++++|+.+|..++.|-.+|.|.+||+..+.....+. +..+..
T Consensus 103 vi~Ts~ghvl~~d~~~nL~~---~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t--- 176 (1206)
T KOG2079|consen 103 VIGTSHGHVLLSDMTGNLGP---LHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT--- 176 (1206)
T ss_pred EEEcCchhhhhhhhhcccch---hhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc---
Confidence 56777777777777653210 11222456899999999999999999999999999999877766554 222222
Q ss_pred eEEEEEEcCCCcEEEEEccCCe
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRT 102 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~ 102 (154)
..+.+.+..++..++++...|.
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc
Confidence 3344556667777888877775
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00021 Score=50.24 Aligned_cols=106 Identities=8% Similarity=0.066 Sum_probs=74.6
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccce--eEeecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTA--MIHHNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~--~~~~~~~~~~ 78 (154)
++.|+.-|.+.+|+-..+.. ...+..+-.+.+..+..+++..++++|+..|.|.++-+....... ...+.. ..+
T Consensus 48 l~~GsS~G~lyl~~R~~~~~---~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d-~~~ 123 (726)
T KOG3621|consen 48 LAMGSSAGSVYLYNRHTGEM---RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCD-KSH 123 (726)
T ss_pred EEEecccceEEEEecCchhh---hcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecccc-ccC
Confidence 45688899999999776553 112222345667777889999999999999999999887743332 222211 112
Q ss_pred eEeEEEEEEcCCCcEEEEEccCCeEEEecCCC
Q 038702 79 WISSFRAIWGWDDSCIFIGNMTRTVEVISPAQ 110 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 110 (154)
...+.+++|++++..+++|...|+|..-.+.+
T Consensus 124 ~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 124 KCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CceEEEEEecccccEEeecCCCceEEEEEech
Confidence 33455679999999999999999988776655
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0041 Score=42.34 Aligned_cols=143 Identities=13% Similarity=0.133 Sum_probs=84.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC-----CCCEEEEeeCCCeEEEEeccccccc--------
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP-----SGSSLATTSFDDTIGIWSGVNFENT-------- 67 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~v~~~~~~~~~~~-------- 67 (154)
++.||..|.++||+............-...-..+|..++.-+ +...|+. -.-..+.+|.+......
T Consensus 40 IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~~~~ 118 (418)
T PF14727_consen 40 IIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGNQYQ 118 (418)
T ss_pred EEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCcEEE
Confidence 478999999999999654432211222225678898888643 2233444 45667888887432211
Q ss_pred --eeEeecCCCCceEeEEEEEEcC----C-CcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEE
Q 038702 68 --AMIHHNNQTGRWISSFRAIWGW----D-DSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLA 140 (154)
Q Consensus 68 --~~~~~~~~~~~~~~~~~~~~~~----~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 140 (154)
..+.|.-+. ..+.++..| . ..++..-+.||.+.+|+-+..-....+.. ...+--+.+.+ ..+.|+
T Consensus 119 L~~~yeh~l~~----~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~---~llPgPl~Y~~-~tDsfv 190 (418)
T PF14727_consen 119 LELIYEHSLQR----TAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD---FLLPGPLCYCP-RTDSFV 190 (418)
T ss_pred EEEEEEEeccc----ceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC---CCCCcCeEEee-cCCEEE
Confidence 222333222 122233322 2 36888999999999999775543333432 22334467777 557788
Q ss_pred EEcCCCeEEEee
Q 038702 141 GATGGGQVYVWT 152 (154)
Q Consensus 141 ~~~~d~~i~~wd 152 (154)
+++.+..+.-|.
T Consensus 191 t~sss~~l~~Yk 202 (418)
T PF14727_consen 191 TASSSWTLECYK 202 (418)
T ss_pred EecCceeEEEec
Confidence 888887777664
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00024 Score=32.59 Aligned_cols=32 Identities=13% Similarity=0.099 Sum_probs=28.9
Q ss_pred ccCCeEEEEEcCCCCEEEEeeCCCeEEEEecc
Q 038702 31 HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV 62 (154)
Q Consensus 31 ~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~ 62 (154)
....|.+++|+|...+++.++.+|.|.++.+.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 45679999999999999999999999999883
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00024 Score=43.51 Aligned_cols=106 Identities=8% Similarity=-0.012 Sum_probs=62.0
Q ss_pred CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCc
Q 038702 43 SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYI 122 (154)
Q Consensus 43 ~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 122 (154)
-+..++.|+.+|.|.+|+........-..... .. ...+-+.-..++.+..+++.+|.||.|++...+.+.....|..
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~-~e--~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~ 145 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSG-EE--SIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF 145 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcc-cc--cceeccccccccceeEEeccCCceeeeccccCceeeeeccccC
Confidence 45688999999999999876222111000000 00 0011111223556889999999999999998877766554432
Q ss_pred CCcceEEEecCCCccEEEEE--cCCCeEEEeeC
Q 038702 123 SAIPCRFHAHPHQVGTLAGA--TGGGQVYVWTS 153 (154)
Q Consensus 123 ~~~~~~~~~~~~~~~~l~~~--~~d~~i~~wd~ 153 (154)
... ....... ..+.++.. +.|..++.|++
T Consensus 146 ~~~-e~~ivv~-sd~~i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 146 ESG-EELIVVG-SDEFLKIADTSHDRVLKKWNV 176 (238)
T ss_pred CCc-ceeEEec-CCceEEeeccccchhhhhcch
Confidence 222 1222222 34566666 77778888876
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0022 Score=45.48 Aligned_cols=101 Identities=9% Similarity=0.078 Sum_probs=68.6
Q ss_pred CCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeC-CCeEEEEeccccccce---------eEeecCCC
Q 038702 7 DGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSF-DDTIGIWSGVNFENTA---------MIHHNNQT 76 (154)
Q Consensus 7 d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~~~~~~~~~~~~---------~~~~~~~~ 76 (154)
++.|.+.|..+.............-......+.++|+|+++++++. +.++.+.|+.+.+... +.... +.
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaev-ev 373 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEP-EL 373 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEee-cc
Confidence 4568888987621111114455566677889999999998877664 8999999998765311 11110 11
Q ss_pred CceEeEEEEEEcCCCcEEEEEccCCeEEEecCCC
Q 038702 77 GRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQ 110 (154)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 110 (154)
....+..+|.++|....+-.-|..|-.|++..
T Consensus 374 --GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 374 --GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred --CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 12334568999998888888999999999875
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0037 Score=45.73 Aligned_cols=136 Identities=9% Similarity=-0.015 Sum_probs=71.1
Q ss_pred CCCcEEEEEccCCCCCCCCCceeeccc-CCeEEEEEcC-----CCCEEEEeeCCCeEEEEeccccccceeE--eecCCCC
Q 038702 6 TDGTACIWDLRSMATDKPEPTKVLSHK-RAVHSAYFSP-----SGSSLATTSFDDTIGIWSGVNFENTAMI--HHNNQTG 77 (154)
Q Consensus 6 ~d~~v~vw~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~-----~~~~l~~~~~d~~v~~~~~~~~~~~~~~--~~~~~~~ 77 (154)
....|+-.|+..++. ......|. .+|..++=.. ....-+.|-.+..+..||.+-....... .+.....
T Consensus 502 ~~~~ly~mDLe~GKV----V~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~ 577 (794)
T PF08553_consen 502 NPNKLYKMDLERGKV----VEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSK 577 (794)
T ss_pred CCCceEEEecCCCcE----EEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccC
Confidence 445666677766653 22222232 2344433211 2334566777888999999865422211 1111111
Q ss_pred ceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 78 RWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
. .+++.-....-+|+.|+.+|.||+||--..+....+++...++ ..+..+. +|.++++.+. ..+.+++
T Consensus 578 ~---~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI--~~iDvt~-DGkwilaTc~-tyLlLi~ 645 (794)
T PF08553_consen 578 N---NFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPI--IGIDVTA-DGKWILATCK-TYLLLID 645 (794)
T ss_pred C---CceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCe--eEEEecC-CCcEEEEeec-ceEEEEE
Confidence 1 2222223345588999999999999954333333333333333 4666666 6777665444 3444444
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00035 Score=46.95 Aligned_cols=112 Identities=14% Similarity=0.090 Sum_probs=77.2
Q ss_pred ecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccc-cccc-----eeEeecC--
Q 038702 4 SSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN-FENT-----AMIHHNN-- 74 (154)
Q Consensus 4 ~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~-~~~~-----~~~~~~~-- 74 (154)
.-.++.+.++|-...... ...+. -|..+|.++.++|.+..+++....|.|..|..+. .+.+ ....+..
T Consensus 118 ~~~sg~i~VvD~~~d~~q---~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdL 194 (558)
T KOG0882|consen 118 LFKSGKIFVVDGFGDFCQ---DGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDL 194 (558)
T ss_pred cccCCCcEEECCcCCcCc---cceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchh
Confidence 345778888887665431 22222 6999999999999999999999999999999873 1111 0111100
Q ss_pred --CCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEe
Q 038702 75 --QTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQ 118 (154)
Q Consensus 75 --~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 118 (154)
-........++.|+|++..+.+-+.|..|++++.++++.++.+.
T Consensus 195 y~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 195 YGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred hcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhh
Confidence 00001112256899999999999999999999999887665543
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.70 E-value=2.7e-05 Score=56.36 Aligned_cols=127 Identities=17% Similarity=0.109 Sum_probs=83.4
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCC--eEEEEeccccccceeEeecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDD--TIGIWSGVNFENTAMIHHNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~v~~~~~~~~~~~~~~~~~~~~~~ 78 (154)
|+.|+..|.|+++++.++.. .....+|.++|+-+.-+.+|..+.+.+.-. ...+|++.....+. |....
T Consensus 1116 L~vG~~~Geik~~nv~sG~~----e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~---Hsf~e-- 1186 (1516)
T KOG1832|consen 1116 LAVGSHAGEIKIFNVSSGSM----EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPR---HSFDE-- 1186 (1516)
T ss_pred EEeeeccceEEEEEccCccc----cccccccccccccccccCCcceeeeeccccCchHHHhccccccCcc---ccccc--
Confidence 57799999999999999875 566669999999999999998777655432 47789887633222 11111
Q ss_pred eEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCC-c-CCcceEEEecCCCccEEE
Q 038702 79 WISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPY-I-SAIPCRFHAHPHQVGTLA 140 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~l~ 140 (154)
.-.+.|+..-..-+.|+......+||+.++..+.++-... . ........|+| +..+++
T Consensus 1187 ---d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP-~D~LIl 1246 (1516)
T KOG1832|consen 1187 ---DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSP-CDTLIL 1246 (1516)
T ss_pred ---cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCC-CcceEe
Confidence 1134677665555556666778999999998877743221 1 11113456888 444443
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0042 Score=39.22 Aligned_cols=134 Identities=12% Similarity=0.076 Sum_probs=75.0
Q ss_pred CCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEc-CCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEE
Q 038702 6 TDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFS-PSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFR 84 (154)
Q Consensus 6 ~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
..+.|..|+..++. ........ ...+.+. +++ .++.+...+ +.++|..+.+.................-.
T Consensus 20 ~~~~i~~~~~~~~~------~~~~~~~~-~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND 90 (246)
T PF08450_consen 20 PGGRIYRVDPDTGE------VEVIDLPG-PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPND 90 (246)
T ss_dssp TTTEEEEEETTTTE------EEEEESSS-EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEE
T ss_pred CCCEEEEEECCCCe------EEEEecCC-CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCce
Confidence 34556666655432 22222222 6777787 564 555555555 45558887765554443211112234446
Q ss_pred EEEcCCCcEEEEEccC--------CeEEEecCCCccceeEEeCCCcCCcceEEEecCCCcc-EEEEEcCCCeEEEeeC
Q 038702 85 AIWGWDDSCIFIGNMT--------RTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVG-TLAGATGGGQVYVWTS 153 (154)
Q Consensus 85 ~~~~~~~~~l~~~~~d--------~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~~wd~ 153 (154)
+++.++|++.++.... |.|..++.. ++...... ....+..++|+| +++ ++++-+..+.|..+++
T Consensus 91 ~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~---~~~~pNGi~~s~-dg~~lyv~ds~~~~i~~~~~ 163 (246)
T PF08450_consen 91 VAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD---GLGFPNGIAFSP-DGKTLYVADSFNGRIWRFDL 163 (246)
T ss_dssp EEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE---EESSEEEEEEET-TSSEEEEEETTTTEEEEEEE
T ss_pred EEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec---CcccccceEECC-cchheeecccccceeEEEec
Confidence 7899999977776533 556666666 44332222 123346889999 555 4567778888888875
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00026 Score=51.35 Aligned_cols=113 Identities=15% Similarity=0.156 Sum_probs=78.7
Q ss_pred cCCeEEEEEcCCCCEEEEeeC----CCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEec
Q 038702 32 KRAVHSAYFSPSGSSLATTSF----DDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVIS 107 (154)
Q Consensus 32 ~~~v~~~~~~~~~~~l~~~~~----d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~ 107 (154)
.+.-+-..|+|..-+|+.++. .|+|.|+- .++++.. ....++...+++|+|..-.|+.|=..|.+.+|.
T Consensus 15 davsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr------~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~ 87 (1416)
T KOG3617|consen 15 DAVSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQR------DVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQK 87 (1416)
T ss_pred cccccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCc------ccccceehhhhccChHHHHHhhccccceeEEEe
Confidence 334445679998888887763 57777764 2333211 111223344679999988999988899999999
Q ss_pred CCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 108 PAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
..+.+.- +....+...+ ..+.|+| ++..++++..-|.+.+|..+
T Consensus 88 ~~~~e~h-tv~~th~a~i-~~l~wS~-~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 88 TNTTETH-TVVETHPAPI-QGLDWSH-DGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred cCCceee-eeccCCCCCc-eeEEecC-CCCeEEEcCCCceeEEEEee
Confidence 8776654 3433344444 5789999 88999999999999999763
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0047 Score=39.26 Aligned_cols=70 Identities=19% Similarity=0.129 Sum_probs=45.3
Q ss_pred EEEcCCCCEEEEeeCCCeEEEEeccccccceeE---eecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCc
Q 038702 38 AYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI---HHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQR 111 (154)
Q Consensus 38 ~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~ 111 (154)
++.+++|+.||.- .|..|-+-..++.-....- ...++.+. --+++|+||+..|+.+...|+|++||+...
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQ---WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~ 75 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQ---WRKLAWSPDCTLLAYAESTGTIRVFDLMGS 75 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCch---heEEEECCCCcEEEEEcCCCeEEEEecccc
Confidence 4566788777665 5666666555443222111 12222222 225789999999999999999999998753
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0062 Score=39.53 Aligned_cols=120 Identities=15% Similarity=0.176 Sum_probs=69.3
Q ss_pred EEEEEccCCCCC----CCCCceeecccCCeEEEEEcCCCCEEEEee-----CCCeEEEEecc-ccccceeEeecCCCCce
Q 038702 10 ACIWDLRSMATD----KPEPTKVLSHKRAVHSAYFSPSGSSLATTS-----FDDTIGIWSGV-NFENTAMIHHNNQTGRW 79 (154)
Q Consensus 10 v~vw~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~d~~v~~~~~~-~~~~~~~~~~~~~~~~~ 79 (154)
..+||.+++... .+.-..+.+|. .|+++|++|++.- ..|.|-+||.. +......+.......
T Consensus 30 ~~v~D~~~g~~~~~~~a~~gRHFyGHg------~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGP-- 101 (305)
T PF07433_consen 30 ALVFDCRTGQLLQRLWAPPGRHFYGHG------VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGP-- 101 (305)
T ss_pred EEEEEcCCCceeeEEcCCCCCEEecCE------EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcCh--
Confidence 567888776531 11123444665 7999999999853 35789999998 334443443222211
Q ss_pred EeEEEEEEcCCCcEEEEEc------------------cCCeEEEecCCCccceeEEeC---CCcCCcceEEEecCCCccE
Q 038702 80 ISSFRAIWGWDDSCIFIGN------------------MTRTVEVISPAQRRSVATLQS---PYISAIPCRFHAHPHQVGT 138 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~------------------~d~~i~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 138 (154)
-.+.+.|+++.|+.+. ++..+-..|..+++.+....- ++...+ -.+++.+ ++..
T Consensus 102 ---Hel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi-RHLa~~~-~G~V 176 (305)
T PF07433_consen 102 ---HELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI-RHLAVDG-DGTV 176 (305)
T ss_pred ---hhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce-eeEEecC-CCcE
Confidence 2345788987776652 334555667777877766432 122222 4566666 4444
Q ss_pred EEEE
Q 038702 139 LAGA 142 (154)
Q Consensus 139 l~~~ 142 (154)
++..
T Consensus 177 ~~a~ 180 (305)
T PF07433_consen 177 AFAM 180 (305)
T ss_pred EEEE
Confidence 4433
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0038 Score=40.46 Aligned_cols=103 Identities=16% Similarity=0.128 Sum_probs=67.9
Q ss_pred eEEEEEcC-CCCEEEEeeCCCe-EEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEc-----cCCeEEEec
Q 038702 35 VHSAYFSP-SGSSLATTSFDDT-IGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGN-----MTRTVEVIS 107 (154)
Q Consensus 35 v~~~~~~~-~~~~l~~~~~d~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~d~~i~i~~ 107 (154)
-..++.+| .+..++.+-.-|+ ..++|.++++....+... .+....- ..+|+++|++|++.- ..|.|-|||
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~--~gRHFyG-Hg~fs~dG~~LytTEnd~~~g~G~IgVyd 83 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAP--PGRHFYG-HGVFSPDGRLLYTTENDYETGRGVIGVYD 83 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCC--CCCEEec-CEEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence 34667788 4555566655554 677899888877655321 1111111 357999999998863 457899999
Q ss_pred CC-CccceeEEeCCCcCCcceEEEecCCCccEEEEEc
Q 038702 108 PA-QRRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT 143 (154)
Q Consensus 108 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 143 (154)
.. +.+.+.++..+.... ..+.+.| ++..|+.+.
T Consensus 84 ~~~~~~ri~E~~s~GIGP--Hel~l~p-DG~tLvVAN 117 (305)
T PF07433_consen 84 AARGYRRIGEFPSHGIGP--HELLLMP-DGETLVVAN 117 (305)
T ss_pred CcCCcEEEeEecCCCcCh--hhEEEcC-CCCEEEEEc
Confidence 99 667777777665554 4677888 666666553
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0031 Score=34.48 Aligned_cols=102 Identities=20% Similarity=0.097 Sum_probs=58.1
Q ss_pred eEEEEEcC---CC-CEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCC
Q 038702 35 VHSAYFSP---SG-SSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQ 110 (154)
Q Consensus 35 v~~~~~~~---~~-~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 110 (154)
|++|++.. +| +.|++|+.|..|++|+-.. ...... +.. .+. .++-. .+..++.+-.+|+|-+|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~Ei~---e~~-~v~--~L~~~-~~~~F~Y~l~NGTVGvY~~~~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAEIT---ETD-KVT--SLCSL-GGGRFAYALANGTVGVYDRSQ 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEEEe---ccc-ceE--EEEEc-CCCEEEEEecCCEEEEEeCcc
Confidence 56666655 33 5899999999999997542 222221 111 122 22223 346788999999999997532
Q ss_pred ccceeEEeCCCcCCcceEEEec---CCCccEEEEEcCCCeEEE
Q 038702 111 RRSVATLQSPYISAIPCRFHAH---PHQVGTLAGATGGGQVYV 150 (154)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~d~~i~~ 150 (154)
.+-..+..+. + .++++. .+...-|++|-.+|.|-+
T Consensus 73 --RlWRiKSK~~-~--~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 73 --RLWRIKSKNQ-V--TSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred --eeeeeccCCC-e--EEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 2223332222 2 233332 212236888999998753
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0091 Score=39.34 Aligned_cols=138 Identities=14% Similarity=0.099 Sum_probs=74.3
Q ss_pred ecCCCcEEEEEccCCCCCCCCCceee--cccCCeEEEEEcCCCCEEEEeeCCCeEEEEecccccc-ceeEeecCCCCceE
Q 038702 4 SSTDGTACIWDLRSMATDKPEPTKVL--SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN-TAMIHHNNQTGRWI 80 (154)
Q Consensus 4 ~~~d~~v~vw~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (154)
++..+.|.+|++...+. ..... .....+.++.. .+++++.|.....+.++....... ....... ....
T Consensus 103 ~~~g~~l~v~~l~~~~~----l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d-~~~~-- 173 (321)
T PF03178_consen 103 VAVGNKLYVYDLDNSKT----LLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLILVARD-YQPR-- 173 (321)
T ss_dssp EEETTEEEEEEEETTSS----EEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EEEEEEE-SS-B--
T ss_pred EeecCEEEEEEccCccc----chhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEccCCEEEEEEec-CCCc--
Confidence 34457899999987651 23222 23335555555 467999999888888886554222 2223222 2222
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCC-------cc-ceeEEeCCCcCCcceEE---EecCC--Cc-----cEEEEE
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQ-------RR-SVATLQSPYISAIPCRF---HAHPH--QV-----GTLAGA 142 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~-------~~-~~~~~~~~~~~~~~~~~---~~~~~--~~-----~~l~~~ 142 (154)
...++.+-+++..++.+..+|.+.++.... +. .+.....-+.+....++ +..|. .. ..++.+
T Consensus 174 ~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~ 253 (321)
T PF03178_consen 174 WVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYG 253 (321)
T ss_dssp EEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEE
T ss_pred cEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEE
Confidence 334556665556899999999999987652 12 22222212222222444 33331 11 247778
Q ss_pred cCCCeEEE
Q 038702 143 TGGGQVYV 150 (154)
Q Consensus 143 ~~d~~i~~ 150 (154)
+.+|.|..
T Consensus 254 T~~G~Ig~ 261 (321)
T PF03178_consen 254 TVDGSIGV 261 (321)
T ss_dssp ETTS-EEE
T ss_pred ecCCEEEE
Confidence 88888873
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0018 Score=48.17 Aligned_cols=103 Identities=12% Similarity=0.097 Sum_probs=69.0
Q ss_pred CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCc
Q 038702 43 SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYI 122 (154)
Q Consensus 43 ~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 122 (154)
.+..++.|+..|.+...|+...-.+ +.........+ .+++|+.+|..++.|-.+|.|.+||...++.++.+..+..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~--~~~ne~v~~~V--tsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGP--LHQNERVQGPV--TSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccch--hhcCCccCCcc--eeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 5667888888898888888765222 11111222223 3678999999999999999999999999988887764433
Q ss_pred CCc-ceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 123 SAI-PCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 123 ~~~-~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
+.. ...+.+.. ++..+.++...|. +|.
T Consensus 174 p~t~vi~v~~t~-~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 174 PVTGVIFVGRTS-QNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred ccceEEEEEEeC-CCcEEEEccCCCc--eEE
Confidence 222 13344554 4456777777775 454
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.01 Score=43.36 Aligned_cols=99 Identities=16% Similarity=0.119 Sum_probs=57.5
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCC-eEEEEEcCCCCEEEEeeCCC-----eEEEEecccccc---ce----
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRA-VHSAYFSPSGSSLATTSFDD-----TIGIWSGVNFEN---TA---- 68 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~-----~v~~~~~~~~~~---~~---- 68 (154)
+.|+.+|.|.+.+-.-.. ...+..+... |..+....+.++|++.+.|+ .+++|+++.... +.
T Consensus 39 vigt~~G~V~~Ln~s~~~-----~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~ 113 (933)
T KOG2114|consen 39 VIGTADGRVVILNSSFQL-----IRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYE 113 (933)
T ss_pred EEeeccccEEEeccccee-----eehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeee
Confidence 567777777666543211 1223344444 55554444556777766654 499999975421 21
Q ss_pred --eEeecCCC-CceEeEEEEEEcCCCcEEEEEccCCeEEEec
Q 038702 69 --MIHHNNQT-GRWISSFRAIWGWDDSCIFIGNMTRTVEVIS 107 (154)
Q Consensus 69 --~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~ 107 (154)
.+.+..+. +.+.. .++.+.+-+.++.|-.+|.|..+.
T Consensus 114 ~ri~~~~np~~~~p~s--~l~Vs~~l~~Iv~Gf~nG~V~~~~ 153 (933)
T KOG2114|consen 114 HRIFTIKNPTNPSPAS--SLAVSEDLKTIVCGFTNGLVICYK 153 (933)
T ss_pred eeeeccCCCCCCCcce--EEEEEccccEEEEEecCcEEEEEc
Confidence 22223331 22222 345677788999999999999884
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0047 Score=33.81 Aligned_cols=53 Identities=13% Similarity=0.129 Sum_probs=41.5
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEec
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSG 61 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~ 61 (154)
|++|++|..|++|+-.. ........+.|.++.-... ..|+.+..+|+|-+|+-
T Consensus 18 LlvGs~D~~IRvf~~~e-------~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 18 LLVGSDDFEIRVFKGDE-------IVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDR 70 (111)
T ss_pred EEEecCCcEEEEEeCCc-------EEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence 57899999999998542 4444466777888887665 67999999999999975
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.012 Score=38.78 Aligned_cols=136 Identities=10% Similarity=0.138 Sum_probs=76.8
Q ss_pred CcEEEEEccCCCCCCCCCc--eeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccc-cceeEeecCCCCceEeEEE
Q 038702 8 GTACIWDLRSMATDKPEPT--KVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFE-NTAMIHHNNQTGRWISSFR 84 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 84 (154)
|.+.++++........+.. ......++|++++-- ++. ++.+ .++.+.+|++...+ .........+. .+. +
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~--~i~--s 134 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVA-VGNKLYVYDLDNSKTLLKKAFYDSPF--YIT--S 134 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEE-ETTEEEEEEEETTSSEEEEEEE-BSS--SEE--E
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEe-ecCEEEEEEccCcccchhhheecceE--EEE--E
Confidence 8899999987411001122 223568899998865 444 4443 35789999998887 33222222211 222 2
Q ss_pred EEEcCCCcEEEEEccCCeEEEecCCC-ccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 85 AIWGWDDSCIFIGNMTRTVEVISPAQ-RRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 85 ~~~~~~~~~l~~~~~d~~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+ ...+.+++.|.....+.++.... ...+..+..........++.+-+ +++.++.+..+|.+.++..
T Consensus 135 l--~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~-d~~~~i~~D~~gnl~~l~~ 201 (321)
T PF03178_consen 135 L--SVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLV-DEDTIIVGDKDGNLFVLRY 201 (321)
T ss_dssp E--EEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE
T ss_pred E--eccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEec-CCcEEEEEcCCCeEEEEEE
Confidence 2 22366888988877777775443 23233333223333345666765 3358999999999988753
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.02 Score=38.89 Aligned_cols=97 Identities=7% Similarity=-0.034 Sum_probs=58.2
Q ss_pred CCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcC
Q 038702 44 GSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYIS 123 (154)
Q Consensus 44 ~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~ 123 (154)
+..++.++.++.+..+|..+++..-....... . .+ ...+..++.++.++.+..+|..+++.+-........
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-----~--~~--~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~ 326 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREYGSV-----N--DF--AVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHR 326 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecCCCc-----c--Cc--EEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCC
Confidence 55677777899999999988765432211110 0 01 114567777788999999999988765433211111
Q ss_pred CcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 124 AIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 124 ~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.. ...... +..+..++.||.+...|.
T Consensus 327 ~~-~sp~v~---~g~l~v~~~~G~l~~ld~ 352 (394)
T PRK11138 327 LL-TAPVLY---NGYLVVGDSEGYLHWINR 352 (394)
T ss_pred cc-cCCEEE---CCEEEEEeCCCEEEEEEC
Confidence 11 111221 356777888888888775
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.019 Score=39.95 Aligned_cols=128 Identities=8% Similarity=0.036 Sum_probs=65.2
Q ss_pred ecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCC-------EEEEeeCCCeEEEEeccccccce---eEeec
Q 038702 4 SSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGS-------SLATTSFDDTIGIWSGVNFENTA---MIHHN 73 (154)
Q Consensus 4 ~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~d~~v~~~~~~~~~~~~---~~~~~ 73 (154)
+.....++-.|+..++ ....-.....|.-+.+.|+.. .-+.|-.|..|.-||++-..... ...+.
T Consensus 352 ~~~~~~l~klDIE~GK-----IVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 352 GGEQDKLYKLDIERGK-----IVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred CCCcCcceeeecccce-----eeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 3333445555555554 222222333366667777432 22345567788889988433311 11222
Q ss_pred CCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEE
Q 038702 74 NQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGA 142 (154)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 142 (154)
...+. .+++.-....-+++.|+.+|.||+||.-.......+++....+. .+..+. ++..|+..
T Consensus 427 y~~k~---nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~--hVdvta-dGKwil~T 489 (644)
T KOG2395|consen 427 YSTKN---NFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIK--HVDVTA-DGKWILAT 489 (644)
T ss_pred ccccc---ccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCcee--eEEeec-cCcEEEEe
Confidence 22221 22222233456899999999999999833333333444333333 344443 55555443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.016 Score=43.95 Aligned_cols=134 Identities=16% Similarity=0.115 Sum_probs=73.5
Q ss_pred CcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEee---CCCeEEEEeccccccceeEeecCCCCceEeEEE
Q 038702 8 GTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTS---FDDTIGIWSGVNFENTAMIHHNNQTGRWISSFR 84 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
..++|||-. +..+. ......+.=.+++|-|.|..+++-. .|+.|.++.-...+.....-........ +-.
T Consensus 222 RkirV~drE-g~Lns----~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~--ve~ 294 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNS----TSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKE--VEE 294 (1265)
T ss_pred eeEEEeccc-chhhc----ccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccc--hhe
Confidence 689999976 32211 0112233445899999999988853 3556887775544333221111111111 336
Q ss_pred EEEcCCCcEEEE---EccCCeEEEecCCCccc--eeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 85 AIWGWDDSCIFI---GNMTRTVEVISPAQRRS--VATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 85 ~~~~~~~~~l~~---~~~d~~i~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
++|+.++..|++ ......|++|-..+..- .+.+.-+.. .-+.|+|.....+..-..+|...++|
T Consensus 295 L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~----~~~~W~p~~~~~L~v~~~sG~~~v~~ 363 (1265)
T KOG1920|consen 295 LAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQK----ALLMWDPVTEKTLHVLRESGQRLVRD 363 (1265)
T ss_pred eeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccc----ccccccCCCceeEEEEecCCcEEEEE
Confidence 789999999888 44555699998775431 122221111 12567775555554444555554443
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0017 Score=39.96 Aligned_cols=101 Identities=11% Similarity=0.087 Sum_probs=58.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee--cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecC-CCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL--SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNN-QTG 77 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~-~~~ 77 (154)
++.|+.+|.|.+|....... ..... +.....+-+.--.++.+..+++.|+.|+.|++...+..-...+.. ...
T Consensus 73 ~~vG~~dg~v~~~n~n~~g~----~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~ 148 (238)
T KOG2444|consen 73 LMVGTSDGAVYVFNWNLEGA----HSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG 148 (238)
T ss_pred EEeecccceEEEecCCccch----HHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence 46788999999998864322 11111 222222223333356688999999999999998776665444322 111
Q ss_pred ceEeEEEEEEcCCCcEEEEE--ccCCeEEEecCCC
Q 038702 78 RWISSFRAIWGWDDSCIFIG--NMTRTVEVISPAQ 110 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~--~~d~~i~i~~~~~ 110 (154)
. .......++.+..+ +.|..++.|++..
T Consensus 149 e-----~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 149 E-----ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred c-----eeEEecCCceEEeeccccchhhhhcchhh
Confidence 1 11123345556555 6677777777653
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0036 Score=27.95 Aligned_cols=31 Identities=26% Similarity=0.254 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCC---CEEEEeeCCCeEEEEeccc
Q 038702 33 RAVHSAYFSPSG---SSLATTSFDDTIGIWSGVN 63 (154)
Q Consensus 33 ~~v~~~~~~~~~---~~l~~~~~d~~v~~~~~~~ 63 (154)
+.+.+++|+|.+ .+|+.+-..+.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999843 5888888889999999985
|
It contains a characteristic DLL sequence motif. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0031 Score=28.91 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=23.9
Q ss_pred ceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 126 PCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 126 ~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
...++|+| ..++|+.++.+|.|.++.+
T Consensus 14 v~~~~w~P-~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 14 VSCMSWCP-TMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred EEEEEECC-CCCEEEEEECCCeEEEEEC
Confidence 35789999 7799999999999999876
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.027 Score=38.70 Aligned_cols=111 Identities=14% Similarity=0.101 Sum_probs=68.6
Q ss_pred cccCCeEEEEEcCCCCEEEEee---CC-CeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEE-ccCCe--
Q 038702 30 SHKRAVHSAYFSPSGSSLATTS---FD-DTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIG-NMTRT-- 102 (154)
Q Consensus 30 ~~~~~v~~~~~~~~~~~l~~~~---~d-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~-- 102 (154)
.-...+..-+|+|++..++..+ .. ..+.++++.+++.......... .....|+|||++|+.. ..|+.
T Consensus 190 ~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~------~~~P~fspDG~~l~f~~~rdg~~~ 263 (425)
T COG0823 190 DSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGN------NGAPAFSPDGSKLAFSSSRDGSPD 263 (425)
T ss_pred ccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCc------cCCccCCCCCCEEEEEECCCCCcc
Confidence 3445677788999998765543 22 4588899998887766653322 1245799999877655 45664
Q ss_pred EEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEE-cCCCeEEE
Q 038702 103 VEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGA-TGGGQVYV 150 (154)
Q Consensus 103 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~~ 150 (154)
|.++|+..++. ..+.. ...+...-.|+| +++.++-. +..|.-.+
T Consensus 264 iy~~dl~~~~~-~~Lt~--~~gi~~~Ps~sp-dG~~ivf~Sdr~G~p~I 308 (425)
T COG0823 264 IYLMDLDGKNL-PRLTN--GFGINTSPSWSP-DGSKIVFTSDRGGRPQI 308 (425)
T ss_pred EEEEcCCCCcc-eeccc--CCccccCccCCC-CCCEEEEEeCCCCCcce
Confidence 66668777663 33432 222224678999 66666544 45554333
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.026 Score=36.22 Aligned_cols=139 Identities=13% Similarity=0.156 Sum_probs=76.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe---------
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH--------- 71 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~--------- 71 (154)
|+.|.++| +.+++..... ......+...|..+...|+-+.+++-+ |+.+.++++..........
T Consensus 10 L~vGt~~G-l~~~~~~~~~-----~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 10 LLVGTEDG-LYVYDLSDPS-----KPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred EEEEECCC-EEEEEecCCc-----cceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 46788888 8999983322 222223444499999999887777764 4999999988755443110
Q ss_pred --ecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCc-----cceeEEeCCCcCCcceEEEecCCCccEEEEEcC
Q 038702 72 --HNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQR-----RSVATLQSPYISAIPCRFHAHPHQVGTLAGATG 144 (154)
Q Consensus 72 --~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 144 (154)
+.......+..+...-...+...+.......|.+|..... +..+.+.-+ ..+..++|.+ +.++.|..
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp---~~~~~i~~~~---~~i~v~~~ 156 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP---DPPSSIAFLG---NKICVGTS 156 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC---CCcEEEEEeC---CEEEEEeC
Confidence 0111111122222111233444444455668888877653 344555433 2335677764 56666655
Q ss_pred CCeEEEeeC
Q 038702 145 GGQVYVWTS 153 (154)
Q Consensus 145 d~~i~~wd~ 153 (154)
++ ..+.|+
T Consensus 157 ~~-f~~idl 164 (275)
T PF00780_consen 157 KG-FYLIDL 164 (275)
T ss_pred Cc-eEEEec
Confidence 43 344443
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.016 Score=42.70 Aligned_cols=100 Identities=15% Similarity=0.070 Sum_probs=61.0
Q ss_pred eeecCCCcEEEEEccCCCCCCCC-CceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 2 ATSSTDGTACIWDLRSMATDKPE-PTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
+.|-.++.+..||.+-...+... ...........+|++-+.+| ++|.|+.+|.||+||--..+-...+ ..-+.++
T Consensus 546 flGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~l---p~lG~pI 621 (794)
T PF08553_consen 546 FLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTAL---PGLGDPI 621 (794)
T ss_pred EEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcC---CCCCCCe
Confidence 35677888999999865421110 11122345567787777666 7899999999999994332211111 1223333
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISP 108 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~ 108 (154)
. .+..+.||+++++.+ +..+.+++.
T Consensus 622 ~--~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 622 I--GIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred e--EEEecCCCcEEEEee-cceEEEEEE
Confidence 3 556788999887765 445556554
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.087 Score=38.78 Aligned_cols=79 Identities=14% Similarity=0.115 Sum_probs=51.4
Q ss_pred CCeEEEEEcCCCCEEEEeeCCCeEEEEecccc---------cccee---E--e-ecCCCCceEeEEEEEEcCC---CcEE
Q 038702 33 RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNF---------ENTAM---I--H-HNNQTGRWISSFRAIWGWD---DSCI 94 (154)
Q Consensus 33 ~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~---------~~~~~---~--~-~~~~~~~~~~~~~~~~~~~---~~~l 94 (154)
-.|..+.++|+|++++..+..|.+.+.=.+.. +.... . . .............+.|+|. +..|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 46889999999999999888775444332211 11100 0 0 1111222345567899996 4788
Q ss_pred EEEccCCeEEEecCCCc
Q 038702 95 FIGNMTRTVEVISPAQR 111 (154)
Q Consensus 95 ~~~~~d~~i~i~~~~~~ 111 (154)
+.-..|+++|+||+...
T Consensus 165 ~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEecCCEEEEEecCCC
Confidence 88899999999999743
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0034 Score=46.23 Aligned_cols=112 Identities=11% Similarity=0.041 Sum_probs=69.9
Q ss_pred cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE-eecCCCCceEeEEEEEEcCCCcEEEEEccCC--eEEEe
Q 038702 30 SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI-HHNNQTGRWISSFRAIWGWDDSCIFIGNMTR--TVEVI 106 (154)
Q Consensus 30 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~--~i~i~ 106 (154)
.|...-+|++|+-..+.|+.|+..|.|+++++.++...... .|.. .+. .+.-+.+|..+++.+.-. -..+|
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~S----avT--~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQS----AVT--LVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccccccc----ccc--cccccCCcceeeeeccccCchHHHh
Confidence 67888999999999999999999999999999987655332 2322 222 233455777766665433 46789
Q ss_pred cCCC-ccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 107 SPAQ-RRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 107 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
++.+ +...+++... ..+.|+. ....-+.|.......+||++
T Consensus 1173 ~~~s~~~~~Hsf~ed------~~vkFsn-~~q~r~~gt~~d~a~~YDvq 1214 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFDED------KAVKFSN-SLQFRALGTEADDALLYDVQ 1214 (1516)
T ss_pred ccccccCcccccccc------ceeehhh-hHHHHHhcccccceEEEecc
Confidence 8864 3444444321 2334443 12223334444466677764
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.02 Score=38.39 Aligned_cols=96 Identities=17% Similarity=0.020 Sum_probs=55.3
Q ss_pred cCCCCEEEEe---------eCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCc
Q 038702 41 SPSGSSLATT---------SFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQR 111 (154)
Q Consensus 41 ~~~~~~l~~~---------~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~ 111 (154)
|||+++++.. +..+.+.++|+++.+...+..... ......|+|+|+.++... ++.|.+.+..++
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~------~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~ 73 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPP------KLQDAKWSPDGKYIAFVR-DNNLYLRDLATG 73 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EET------TBSEEEE-SSSTEEEEEE-TTEEEEESSTTS
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCcc------ccccceeecCCCeeEEEe-cCceEEEECCCC
Confidence 4666666553 224568889998865544332211 112467999999988875 678999998766
Q ss_pred cceeEEe-C-------CC------c-CCcceEEEecCCCccEEEEEcC
Q 038702 112 RSVATLQ-S-------PY------I-SAIPCRFHAHPHQVGTLAGATG 144 (154)
Q Consensus 112 ~~~~~~~-~-------~~------~-~~~~~~~~~~~~~~~~l~~~~~ 144 (154)
+..+.-. + -. . ......+-|+| ++++|+....
T Consensus 74 ~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSp-d~~~la~~~~ 120 (353)
T PF00930_consen 74 QETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSP-DSKYLAFLRF 120 (353)
T ss_dssp EEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-T-TSSEEEEEEE
T ss_pred CeEEeccccceeEEcCccceeccccccccccceEECC-CCCEEEEEEE
Confidence 4332211 1 00 0 11224678999 7788776653
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.09 Score=36.48 Aligned_cols=135 Identities=13% Similarity=0.131 Sum_probs=63.8
Q ss_pred CcEEEEEccCC-----CCCCCCCceee-cccCCeEEEEEcCCCCEEEEeeCCCeEEEEecccccccee-------Eeec-
Q 038702 8 GTACIWDLRSM-----ATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAM-------IHHN- 73 (154)
Q Consensus 8 ~~v~vw~~~~~-----~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~-------~~~~- 73 (154)
..|+..|+... ....+...+.. ...-....+.++|+|+.++. +.||...++.....+.... ....
T Consensus 2 ~~i~~~~~~~~~~~~dg~~~~l~~k~lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~G~g~~~vw~~~n 80 (443)
T PF04053_consen 2 NEIRTANLKNISEIKDGERLPLSVKELGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAFGSGLSFVWSSRN 80 (443)
T ss_dssp TEEEEEE--S-----TTS-B----EEEEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEEEE-SEEEE-TSS
T ss_pred CceEEEECcCCCccCCCceeeEEeccCCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccccCceeEEEEecCc
Confidence 35667777654 11111112222 33446789999999998888 5677777776432111100 0000
Q ss_pred ----CCCCceEeE-----------E------EEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEec
Q 038702 74 ----NQTGRWISS-----------F------RAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAH 132 (154)
Q Consensus 74 ----~~~~~~~~~-----------~------~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (154)
......+.. + .-.|. |.+|+..+. +.|.+||..+++.+..+... . ...+.|+
T Consensus 81 ~yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~~~If~--G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~--vk~V~Ws 153 (443)
T PF04053_consen 81 RYAVLESSSTIKIYKNFKNEVVKSIKLPFSVEKIFG--GNLLGVKSS-DFICFYDWETGKLIRRIDVS--A--VKYVIWS 153 (443)
T ss_dssp EEEEE-TTS-EEEEETTEE-TT-----SS-EEEEE---SSSEEEEET-TEEEEE-TTT--EEEEESS---E---EEEEE-
T ss_pred cEEEEECCCeEEEEEcCccccceEEcCCcccceEEc--CcEEEEECC-CCEEEEEhhHcceeeEEecC--C--CcEEEEE
Confidence 000000100 0 11122 666666654 48999999999999988632 1 2578999
Q ss_pred CCCccEEEEEcCCCeEEEee
Q 038702 133 PHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 133 ~~~~~~l~~~~~d~~i~~wd 152 (154)
+ ++++++..+.+ .+.+++
T Consensus 154 ~-~g~~val~t~~-~i~il~ 171 (443)
T PF04053_consen 154 D-DGELVALVTKD-SIYILK 171 (443)
T ss_dssp T-TSSEEEEE-S--SEEEEE
T ss_pred C-CCCEEEEEeCC-eEEEEE
Confidence 8 77888888765 555543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0089 Score=44.15 Aligned_cols=144 Identities=9% Similarity=0.051 Sum_probs=79.3
Q ss_pred CcEEEEEccCCCCCCCCCce--ee-cccCCeEEEEEcC---CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCc---
Q 038702 8 GTACIWDLRSMATDKPEPTK--VL-SHKRAVHSAYFSP---SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGR--- 78 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~--~~-~~~~~v~~~~~~~---~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~--- 78 (154)
|.+.||++.--+.+....+. .. .....+.-+.|.| +..++..+-.++.+++..........+..|......
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~ 232 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAF 232 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHH
Confidence 56778887653221111111 11 2344556666666 556777777889999888776554333222211000
Q ss_pred ---eEeEEEEEEcCCCcEEEEEccCCeEEEecCC-----CccceeEEeCCCcCCcceEEEecCC--------CccEEEEE
Q 038702 79 ---WISSFRAIWGWDDSCIFIGNMTRTVEVISPA-----QRRSVATLQSPYISAIPCRFHAHPH--------QVGTLAGA 142 (154)
Q Consensus 79 ---~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~~~ 142 (154)
.+.. -...+|||..++.++.||.+++|.+. ...++...+.|......|.+ ++.. .-.+++++
T Consensus 233 ~~~g~~~-l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itt 310 (1283)
T KOG1916|consen 233 FAEGVLK-LASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITT 310 (1283)
T ss_pred Hhhchhh-heeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEec
Confidence 0000 12369999999999999999888754 34556666655544432333 2220 00134444
Q ss_pred c-CCCeEEEeeC
Q 038702 143 T-GGGQVYVWTS 153 (154)
Q Consensus 143 ~-~d~~i~~wd~ 153 (154)
+ ....+++|..
T Consensus 311 td~nre~k~w~~ 322 (1283)
T KOG1916|consen 311 TDVNREEKFWAE 322 (1283)
T ss_pred ccCCcceeEeec
Confidence 4 5567888863
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.038 Score=39.43 Aligned_cols=59 Identities=7% Similarity=-0.009 Sum_probs=34.6
Q ss_pred CCcEEEEEccC------CeEEEecCCC-c--cceeEEeCCCcCCcceEEEecCCCccEEEEEcCCC--eEEEeeC
Q 038702 90 DDSCIFIGNMT------RTVEVISPAQ-R--RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGG--QVYVWTS 153 (154)
Q Consensus 90 ~~~~l~~~~~d------~~i~i~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~--~i~~wd~ 153 (154)
+++..+.|+.+ ..+..||..+ . +.+..+..+... ..++.. ++.+.+.|+.++ .+..||+
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~---~~~~~~--~~~iyv~Gg~~~~~~~e~yd~ 532 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA---LHTILH--DNTIMMLHCYESYMLQDTFNV 532 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc---ceeEEE--CCEEEEEeeecceeehhhcCc
Confidence 56777777654 2467899886 3 334444322221 222222 568889999888 5666665
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.16 Score=34.88 Aligned_cols=100 Identities=16% Similarity=0.034 Sum_probs=58.1
Q ss_pred eEEEEEcCCCCEEEEe-eCCC----eEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccC---------
Q 038702 35 VHSAYFSPSGSSLATT-SFDD----TIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMT--------- 100 (154)
Q Consensus 35 v~~~~~~~~~~~l~~~-~~d~----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--------- 100 (154)
+....++|++++++.+ +..| .+++.|+++++......... ..-.+.|.++++.++....+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~------~~~~~~W~~d~~~~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP------KFSSVSWSDDGKGFFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE------ESEEEEECTTSSEEEEEECSTTTSS-CCG
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc------ccceEEEeCCCCEEEEEEeCcccccccCC
Confidence 3467899999988764 3333 59999999885543221111 11127899998876665422
Q ss_pred --CeEEEecCCCccce--eEEeCCCcCCcceEEEecCCCccEEEE
Q 038702 101 --RTVEVISPAQRRSV--ATLQSPYISAIPCRFHAHPHQVGTLAG 141 (154)
Q Consensus 101 --~~i~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~ 141 (154)
..|+.|.+.+...- ..+...........+..++ ++++++.
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i 243 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-DGRYLFI 243 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-TSSEEEE
T ss_pred CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecC-cccEEEE
Confidence 24778888766443 3344333333235677787 6666554
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.16 Score=36.81 Aligned_cols=97 Identities=19% Similarity=0.282 Sum_probs=60.2
Q ss_pred CCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEc--CCCCEEEEeeCCCeEEEEeccc-----ccc----ceeEeecC
Q 038702 6 TDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFS--PSGSSLATTSFDDTIGIWSGVN-----FEN----TAMIHHNN 74 (154)
Q Consensus 6 ~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~v~~~~~~~-----~~~----~~~~~~~~ 74 (154)
....+.|||.+.... .....+...+.|.++.|. |+++.+++.+....|.++.-.. ..+ ...+.-..
T Consensus 49 ~~~~LtIWD~~~~~l---E~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~ 125 (631)
T PF12234_consen 49 SRSELTIWDTRSGVL---EYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISS 125 (631)
T ss_pred CCCEEEEEEcCCcEE---EEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeec
Confidence 345689999987542 122333568899999995 4889999999999999986531 111 11111112
Q ss_pred CCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCC
Q 038702 75 QTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPA 109 (154)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~ 109 (154)
.+++.+. ...|.++|.+++.++ +.+.|+|-.
T Consensus 126 ~T~h~Ig--ds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 126 HTPHPIG--DSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred CCCCCcc--ceeEecCCeEEEEeC--CEEEEECCC
Confidence 2223333 457898888776553 567777643
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.025 Score=37.91 Aligned_cols=86 Identities=15% Similarity=0.205 Sum_probs=50.6
Q ss_pred CCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCC-----CCc---
Q 038702 7 DGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQ-----TGR--- 78 (154)
Q Consensus 7 d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~-----~~~--- 78 (154)
.+.+.++|+.+++ ...+......+....|||+|+.++... ++.|.+.+..+.....+...... ...
T Consensus 22 ~~~y~i~d~~~~~-----~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvy 95 (353)
T PF00930_consen 22 KGDYYIYDIETGE-----ITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVY 95 (353)
T ss_dssp EEEEEEEETTTTE-----EEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHH
T ss_pred ceeEEEEecCCCc-----eEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceec
Confidence 3567888888754 233333367889999999999988874 56799998876643322211100 000
Q ss_pred ----eEeEEEEEEcCCCcEEEEEc
Q 038702 79 ----WISSFRAIWGWDDSCIFIGN 98 (154)
Q Consensus 79 ----~~~~~~~~~~~~~~~l~~~~ 98 (154)
.-..-.+-|+||+++|+...
T Consensus 96 eEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 96 EEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp HHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred cccccccccceEECCCCCEEEEEE
Confidence 00111357999999888864
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.16 Score=32.54 Aligned_cols=134 Identities=11% Similarity=0.088 Sum_probs=75.8
Q ss_pred CCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEE-E
Q 038702 6 TDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSF-R 84 (154)
Q Consensus 6 ~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 84 (154)
.++...+||..+.+ ....+...+.=..++ .+++.|+.+.....+..+|..+.+....+.... .+..+..+ .
T Consensus 108 k~~~~f~yd~~tl~-----~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~-~g~pv~~LNE 179 (264)
T PF05096_consen 108 KEGTGFVYDPNTLK-----KIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTD-NGRPVSNLNE 179 (264)
T ss_dssp SSSEEEEEETTTTE-----EEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EE-TTEE---EEE
T ss_pred cCCeEEEEccccce-----EEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEE-CCEECCCcEe
Confidence 46778888887654 333344444445555 478888888888899999998876654443221 11122111 2
Q ss_pred EEEcCCCcEEEEEccCCeEEEecCCCccceeEEeC----------C---CcCCcceEEEecCCCccEEEEEcCCCeE
Q 038702 85 AIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQS----------P---YISAIPCRFHAHPHQVGTLAGATGGGQV 148 (154)
Q Consensus 85 ~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~----------~---~~~~~~~~~~~~~~~~~~l~~~~~d~~i 148 (154)
+.|- +|...|-.=....|...|..+|+....+.. . ....+-..++++|..+.+++||-.=..+
T Consensus 180 LE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~l 255 (264)
T PF05096_consen 180 LEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKL 255 (264)
T ss_dssp EEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEE
T ss_pred EEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCce
Confidence 2333 566666555666777778888877665531 0 1123347899999888888998654433
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.17 Score=32.40 Aligned_cols=64 Identities=8% Similarity=-0.034 Sum_probs=46.8
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEecccccccee
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAM 69 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~ 69 (154)
+.|...|.+++.+..++.. ...+......-......+++..+..++.|+.....|.++......
T Consensus 67 V~GCy~g~lYfl~~~tGs~----~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 67 VLGCYSGGLYFLCVKTGSQ----IWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYK 130 (354)
T ss_pred EEEEccCcEEEEEecchhh----eeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEe
Confidence 5688899999999998864 333332222222345677999999999999999999988766544
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.28 Score=34.70 Aligned_cols=82 Identities=12% Similarity=0.101 Sum_probs=53.0
Q ss_pred CCeEEEEEcCCCCEEEEeeCCCeEEEEeccc---------cccceeEee------cCCCCceEeEEEEEEcCCC---cEE
Q 038702 33 RAVHSAYFSPSGSSLATTSFDDTIGIWSGVN---------FENTAMIHH------NNQTGRWISSFRAIWGWDD---SCI 94 (154)
Q Consensus 33 ~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~---------~~~~~~~~~------~~~~~~~~~~~~~~~~~~~---~~l 94 (154)
-.|..+..++.|..++-++.+|.+.++-.+. ++.....+. .......+....++|+|+. ..|
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 4567788899999999999999776654332 211111110 0011123444567899975 577
Q ss_pred EEEccCCeEEEecCCCccce
Q 038702 95 FIGNMTRTVEVISPAQRRSV 114 (154)
Q Consensus 95 ~~~~~d~~i~i~~~~~~~~~ 114 (154)
..-..|+++|+||+.....+
T Consensus 184 ~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEEecCcEEEEEecCCcchh
Confidence 77788999999998865544
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.28 Score=33.63 Aligned_cols=117 Identities=15% Similarity=0.046 Sum_probs=67.1
Q ss_pred CeEEEEEcCCCCEEEEeeCCCeEEEEeccccccce-------------------------eEeecCCC------------
Q 038702 34 AVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTA-------------------------MIHHNNQT------------ 76 (154)
Q Consensus 34 ~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~-------------------------~~~~~~~~------------ 76 (154)
.|+.+.|+++..-|+.+...|.|.+|.....+... ...+....
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 47889999998899999999999998765432111 00000000
Q ss_pred ---CceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCC------CcCCcceEEEec----CCCc---cEEE
Q 038702 77 ---GRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSP------YISAIPCRFHAH----PHQV---GTLA 140 (154)
Q Consensus 77 ---~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~------~~~~~~~~~~~~----~~~~---~~l~ 140 (154)
...+. .++.+ +--+++.|..+|.+.|.|+|.+..+..-.-. ........+.|. ..++ -.++
T Consensus 83 ~~~~g~vt--al~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 DAKQGPVT--ALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp ---S-SEE--EEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eccCCcEe--EEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 00111 12333 5568999999999999999987766553211 112222333333 1122 3678
Q ss_pred EEcCCCeEEEeeC
Q 038702 141 GATGGGQVYVWTS 153 (154)
Q Consensus 141 ~~~~d~~i~~wd~ 153 (154)
.|...|.+.+|.+
T Consensus 160 vGTn~G~v~~fkI 172 (395)
T PF08596_consen 160 VGTNSGNVLTFKI 172 (395)
T ss_dssp EEETTSEEEEEEE
T ss_pred EEeCCCCEEEEEE
Confidence 8888899998865
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.37 Score=34.90 Aligned_cols=105 Identities=19% Similarity=0.219 Sum_probs=54.9
Q ss_pred CCeEEEEEcCCCCEEEEee------CCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccC-CeEEE
Q 038702 33 RAVHSAYFSPSGSSLATTS------FDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMT-RTVEV 105 (154)
Q Consensus 33 ~~v~~~~~~~~~~~l~~~~------~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-~~i~i 105 (154)
..+.+.+++|+|+.++..- .|..-.+|-.........+.... . .....|+|+|..+.+.... ..+++
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~----~--~t~PsWspDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH----S--LTRPSWSLDADAVWVVVDGNTVVRV 423 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC----C--CCCceECCCCCceEEEecCcceEEE
Confidence 4678899999999887665 24443444332222222221111 1 1245799998877766533 22333
Q ss_pred e-----------cCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEE
Q 038702 106 I-----------SPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYV 150 (154)
Q Consensus 106 ~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~ 150 (154)
. ++..++.... . ... ...+.|+| ++..++... ++.|.+
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~~---~-~g~-Issl~wSp-DG~RiA~i~-~g~v~V 472 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVASR---V-PGP-ISELQLSR-DGVRAAMII-GGKVYL 472 (591)
T ss_pred eccCCCceEEEEeccCchhhhc---c-CCC-cCeEEECC-CCCEEEEEE-CCEEEE
Confidence 3 3333222211 1 112 36889999 777766544 356654
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.3 Score=33.67 Aligned_cols=90 Identities=20% Similarity=0.071 Sum_probs=56.3
Q ss_pred cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe-ecCCCCceEeEEEE-------EEcC-----CCc-EEE
Q 038702 30 SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQTGRWISSFRA-------IWGW-----DDS-CIF 95 (154)
Q Consensus 30 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------~~~~-----~~~-~l~ 95 (154)
.....+.++..+|.+++.++...-|+|.++|+.+.......+ ..+....++....- ..++ ... +++
T Consensus 305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 456678999999999998888888999999998876553332 11111111111000 0000 011 344
Q ss_pred EEccCCeEEEecCCCccceeEEeC
Q 038702 96 IGNMTRTVEVISPAQRRSVATLQS 119 (154)
Q Consensus 96 ~~~~d~~i~i~~~~~~~~~~~~~~ 119 (154)
.+-.-|.|.||.++++..+..+.-
T Consensus 385 yaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 385 YAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EeccCCeEEEEecCCCCEEEEEEe
Confidence 566788999999999888777653
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.31 Score=33.24 Aligned_cols=136 Identities=15% Similarity=0.143 Sum_probs=82.2
Q ss_pred cCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeC---CCeEEEEeccccccceeEeecCCCCceEe
Q 038702 5 STDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSF---DDTIGIWSGVNFENTAMIHHNNQTGRWIS 81 (154)
Q Consensus 5 ~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (154)
..++.|.+.|..... ......-......++++|++..+..+.. ++++.+.|..+........... .
T Consensus 93 ~~~~~v~vid~~~~~-----~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~-~----- 161 (381)
T COG3391 93 GDSNTVSVIDTATNT-----VLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN-T----- 161 (381)
T ss_pred CCCCeEEEEcCcccc-----eeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC-C-----
Confidence 345677777755443 3333333336678999999988777665 6888888888777666533322 1
Q ss_pred EEEEEEcCCCcEEEEEc-cCCeEEEecCCCccceeEEe---CCCcCCcceEEEecCCCccE-EEEEcCC--CeEEEeeC
Q 038702 82 SFRAIWGWDDSCIFIGN-MTRTVEVISPAQRRSVATLQ---SPYISAIPCRFHAHPHQVGT-LAGATGG--GQVYVWTS 153 (154)
Q Consensus 82 ~~~~~~~~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-l~~~~~d--~~i~~wd~ 153 (154)
...++++|++..+.... .++.|.+.|........ -. .-.....+..+.+.| ++.. .++-..+ +.+...|.
T Consensus 162 P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~-~g~~~yV~~~~~~~~~v~~id~ 238 (381)
T COG3391 162 PTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDP-DGNRVYVANDGSGSNNVLKIDT 238 (381)
T ss_pred cceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECC-CCCEEEEEeccCCCceEEEEeC
Confidence 14668899999665554 78899999976655442 11 011122235677888 5553 3333333 46655543
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.13 Score=36.64 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=24.9
Q ss_pred CCcEEEEEccCCeEEEecCCCccceeEE
Q 038702 90 DDSCIFIGNMTRTVEVISPAQRRSVATL 117 (154)
Q Consensus 90 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~ 117 (154)
+..++++-+.|+++|+||+.+++++.+.
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 6789999999999999999999986654
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.31 Score=32.48 Aligned_cols=132 Identities=16% Similarity=0.214 Sum_probs=76.2
Q ss_pred CcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEee----------CCCeEEEEeccccccceeEeecC---
Q 038702 8 GTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTS----------FDDTIGIWSGVNFENTAMIHHNN--- 74 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~v~~~~~~~~~~~~~~~~~~--- 74 (154)
+.+.++|..+++. .-.. ..+..-.+..+|+++.+++++ ...-|.+||..+......+.-+.
T Consensus 17 ~rv~viD~d~~k~-----lGmi-~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R 90 (342)
T PF06433_consen 17 SRVYVIDADSGKL-----LGMI-DTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPR 90 (342)
T ss_dssp EEEEEEETTTTEE-----EEEE-EEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B
T ss_pred ceEEEEECCCCcE-----EEEe-ecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcch
Confidence 4688888776542 2221 223334467899999888743 24569999999876655443221
Q ss_pred -CCCceEeEEEEEEcCCCcEEEEEc--cCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEe
Q 038702 75 -QTGRWISSFRAIWGWDDSCIFIGN--MTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 151 (154)
Q Consensus 75 -~~~~~~~~~~~~~~~~~~~l~~~~--~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w 151 (154)
....... ...++.++++++... -...|.|-|+..++.+.++..+. + ..+-.. .++-|.+-+.||++...
T Consensus 91 ~~~~~~~~--~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C--~~iyP~--~~~~F~~lC~DGsl~~v 162 (342)
T PF06433_consen 91 AQVVPYKN--MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--C--WLIYPS--GNRGFSMLCGDGSLLTV 162 (342)
T ss_dssp --BS--GG--GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--E--EEEEEE--ETTEEEEEETTSCEEEE
T ss_pred heeccccc--ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--E--EEEEec--CCCceEEEecCCceEEE
Confidence 1111111 235678888776654 34568888888888887776432 1 122222 23457777888877655
Q ss_pred eC
Q 038702 152 TS 153 (154)
Q Consensus 152 d~ 153 (154)
.+
T Consensus 163 ~L 164 (342)
T PF06433_consen 163 TL 164 (342)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.44 Score=34.15 Aligned_cols=124 Identities=12% Similarity=0.120 Sum_probs=69.9
Q ss_pred eecccCCeEEEEEcCC----CCEEEEeeCCCeEEEEeccc--cccceeE-eecCCC--CceEeEEEEEEcCCCcEEEEEc
Q 038702 28 VLSHKRAVHSAYFSPS----GSSLATTSFDDTIGIWSGVN--FENTAMI-HHNNQT--GRWISSFRAIWGWDDSCIFIGN 98 (154)
Q Consensus 28 ~~~~~~~v~~~~~~~~----~~~l~~~~~d~~v~~~~~~~--~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~l~~~~ 98 (154)
..+.-..|..+.|.|- .-.+.+.-....|.+|.+.. .+..... ....+. .-.+-.-.+.|+|....|+.-.
T Consensus 52 viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT 131 (671)
T PF15390_consen 52 VIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLT 131 (671)
T ss_pred EeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEe
Confidence 3455567999999994 22566666788899999862 2222111 111111 1112222568999998887766
Q ss_pred cCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEE-cCCCeEEEeeC
Q 038702 99 MTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGA-TGGGQVYVWTS 153 (154)
Q Consensus 99 ~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~~wd~ 153 (154)
....--+++++.....-...-...+. ..+.+|.+ +++.|+.+ +..=.-++||-
T Consensus 132 ~~dvSV~~sV~~d~srVkaDi~~~G~-IhCACWT~-DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 132 ARDVSVLPSVHCDSSRVKADIKTSGL-IHCACWTK-DGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred cCceeEeeeeeeCCceEEEeccCCce-EEEEEecC-cCCEEEEEeCCeEEEEEecC
Confidence 55554556665433322222222333 36789999 66665544 44445678873
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.49 Score=34.43 Aligned_cols=112 Identities=12% Similarity=-0.002 Sum_probs=62.9
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCC-----
Q 038702 35 VHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPA----- 109 (154)
Q Consensus 35 v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~----- 109 (154)
..-+.-+.-++.-++-+...++.|||.+...... ...-.....+..+.-...|+++.+++-+..+.|.+|.-.
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~--~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEY--EESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEE--eeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 3344444444444444445679999998776322 221123344555555567899998888889999888431
Q ss_pred ----CccceeEEe--CCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 110 ----QRRSVATLQ--SPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 110 ----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
+...+..+. .+....+ .+..|.+ ++.++ .|+ ++.+.++|
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~I-gds~Wl~-~G~Lv-V~s-GNqlfv~d 154 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPI-GDSIWLK-DGTLV-VGS-GNQLFVFD 154 (631)
T ss_pred cCCcccceeEEEEeecCCCCCc-cceeEec-CCeEE-EEe-CCEEEEEC
Confidence 223344432 2222222 5678887 55444 333 34666665
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.37 Score=32.84 Aligned_cols=138 Identities=16% Similarity=0.104 Sum_probs=77.9
Q ss_pred CCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEee-CCCeEEEEeccccccceeEeecCCCCceEeEEEE
Q 038702 7 DGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRA 85 (154)
Q Consensus 7 d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (154)
++++.+.|..++.. ......-..+ ..++++|+|+.++... .++.+.+.|........ -...............
T Consensus 139 ~~~vsvid~~t~~~----~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i 212 (381)
T COG3391 139 NNTVSVIDAATNKV----TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGI 212 (381)
T ss_pred CceEEEEeCCCCeE----EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceE
Confidence 45666666655542 2222211233 8899999999776665 78899999976654442 1100000111122345
Q ss_pred EEcCCCcEEEEEccC---CeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEE-cCCCeEEEee
Q 038702 86 IWGWDDSCIFIGNMT---RTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGA-TGGGQVYVWT 152 (154)
Q Consensus 86 ~~~~~~~~l~~~~~d---~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~~wd 152 (154)
.++|++.++...... +.+...|..++.....-...... ....+..+| ++..+... ...+.+.+-|
T Consensus 213 ~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p-~g~~~yv~~~~~~~V~vid 281 (381)
T COG3391 213 AVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDP-AGKAAYVANSQGGTVSVID 281 (381)
T ss_pred EECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECC-CCCEEEEEecCCCeEEEEe
Confidence 789999866655443 58888998887766542212222 234567777 55555444 3345555544
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.33 Score=32.07 Aligned_cols=110 Identities=10% Similarity=0.018 Sum_probs=63.7
Q ss_pred cccCCeEEEEEcCCCCEEEEeeC-CCeEEEEeccc--c---ccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCC-e
Q 038702 30 SHKRAVHSAYFSPSGSSLATTSF-DDTIGIWSGVN--F---ENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTR-T 102 (154)
Q Consensus 30 ~~~~~v~~~~~~~~~~~l~~~~~-d~~v~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-~ 102 (154)
++-..-+.|+|||+++.|+.+.. .+.+.-+++.. . ............+.. =.++...+|.+.+.+...| .
T Consensus 160 ~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~P---DG~~vDadG~lw~~a~~~g~~ 236 (307)
T COG3386 160 DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLP---DGMAVDADGNLWVAAVWGGGR 236 (307)
T ss_pred CcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCC---CceEEeCCCCEEEecccCCce
Confidence 44556678999999988777655 47788887753 1 111111111111100 0234466788776555554 8
Q ss_pred EEEecCCCccceeEEeCCCcCCcceEEEecCC-CccEEEEEcCC
Q 038702 103 VEVISPAQRRSVATLQSPYISAIPCRFHAHPH-QVGTLAGATGG 145 (154)
Q Consensus 103 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d 145 (154)
|..|+.. ++.+..+..+..... .++|-.. ...+++++...
T Consensus 237 v~~~~pd-G~l~~~i~lP~~~~t--~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 237 VVRFNPD-GKLLGEIKLPVKRPT--NPAFGGPDLNTLYITSARS 277 (307)
T ss_pred EEEECCC-CcEEEEEECCCCCCc--cceEeCCCcCEEEEEecCC
Confidence 9999998 998888886654443 3444332 23455555544
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.17 Score=31.67 Aligned_cols=65 Identities=11% Similarity=0.070 Sum_probs=41.4
Q ss_pred cCCCcEEEEEccCCeEEEecCCCccceeEE------eCC------CcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 88 GWDDSCIFIGNMTRTVEVISPAQRRSVATL------QSP------YISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 88 ~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~------~~~------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
..++.++++-+.+|.+++||+.+++.+..- -.. ........+..+. +|.-+++- .+|..+.|+.+
T Consensus 19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~-~G~PiV~l-sng~~y~y~~~ 95 (219)
T PF07569_consen 19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS-NGVPIVTL-SNGDSYSYSPD 95 (219)
T ss_pred EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC-CCCEEEEE-eCCCEEEeccc
Confidence 457889999999999999999987654332 110 1112224455664 56656554 45778888763
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.54 Score=33.38 Aligned_cols=73 Identities=11% Similarity=0.096 Sum_probs=46.5
Q ss_pred EEEEEEcCCCcEEEEEccCCeEEEecC---------CCccceeEEe---------CCCcCCcceEEEecCCC--ccEEEE
Q 038702 82 SFRAIWGWDDSCIFIGNMTRTVEVISP---------AQRRSVATLQ---------SPYISAIPCRFHAHPHQ--VGTLAG 141 (154)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~d~~i~i~~~---------~~~~~~~~~~---------~~~~~~~~~~~~~~~~~--~~~l~~ 141 (154)
+.++..++.|..++-.+.+|.+.++=. +.++..-..+ ...........+|+|+. ...|..
T Consensus 106 V~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~i 185 (741)
T KOG4460|consen 106 VYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVL 185 (741)
T ss_pred EEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEE
Confidence 345677899999999999997665532 2333221111 11122223467899954 467888
Q ss_pred EcCCCeEEEeeCC
Q 038702 142 ATGGGQVYVWTSD 154 (154)
Q Consensus 142 ~~~d~~i~~wd~~ 154 (154)
-+.|..|++||++
T Consensus 186 L~sdnviRiy~lS 198 (741)
T KOG4460|consen 186 LTSDNVIRIYSLS 198 (741)
T ss_pred EecCcEEEEEecC
Confidence 8899999999974
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.67 Score=33.66 Aligned_cols=113 Identities=6% Similarity=-0.042 Sum_probs=55.0
Q ss_pred CeEEEEEcCCCCEEEEeeCC-CeEEEEeccccccceeEeecC-----CCCceEeEEEEEEcCCCcEEEEEccCCeEEE--
Q 038702 34 AVHSAYFSPSGSSLATTSFD-DTIGIWSGVNFENTAMIHHNN-----QTGRWISSFRAIWGWDDSCIFIGNMTRTVEV-- 105 (154)
Q Consensus 34 ~v~~~~~~~~~~~l~~~~~d-~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i-- 105 (154)
....-.|+|+|..+.+.... ..+++.+-............. ..... +..+.|+|||..++.-. ++.|.+
T Consensus 398 ~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~--Issl~wSpDG~RiA~i~-~g~v~Va~ 474 (591)
T PRK13616 398 SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGP--ISELQLSRDGVRAAMII-GGKVYLAV 474 (591)
T ss_pred CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCC--cCeEEECCCCCEEEEEE-CCEEEEEE
Confidence 37788999998877776533 222232221111111111000 00112 33568999999887765 567776
Q ss_pred -ecCCCccc-e---eEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 106 -ISPAQRRS-V---ATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 106 -~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
-....++. + ..+. .........+.|.+ ++.++ .+..++...+|.
T Consensus 475 Vvr~~~G~~~l~~~~~l~-~~l~~~~~~l~W~~-~~~L~-V~~~~~~~~v~~ 523 (591)
T PRK13616 475 VEQTEDGQYALTNPREVG-PGLGDTAVSLDWRT-GDSLV-VGRSDPEHPVWY 523 (591)
T ss_pred EEeCCCCceeecccEEee-cccCCccccceEec-CCEEE-EEecCCCCceEE
Confidence 33334431 1 1111 11112125678988 55544 444444444443
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.49 Score=34.88 Aligned_cols=106 Identities=9% Similarity=0.047 Sum_probs=63.5
Q ss_pred CeeecCCCcEEEEEccCC------C---C------CCCCCceeecccCCeEEEEEc--CCCCEEEEeeCCCeEEEEeccc
Q 038702 1 MATSSTDGTACIWDLRSM------A---T------DKPEPTKVLSHKRAVHSAYFS--PSGSSLATTSFDDTIGIWSGVN 63 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~------~---~------~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~v~~~~~~~ 63 (154)
|+.|.+||.|.+|.++.- . . ....+.-........++++++ ...+++|+++....|.|+-...
T Consensus 117 Ll~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l 196 (717)
T PF08728_consen 117 LLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFAL 196 (717)
T ss_pred EEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEec
Confidence 578999999999977321 0 0 001122222456688999998 7788888888888888876654
Q ss_pred cccceeEeecCCCCceEeEEEEEEcC-----CCc-EEEEEccCCeEEEecC
Q 038702 64 FENTAMIHHNNQTGRWISSFRAIWGW-----DDS-CIFIGNMTRTVEVISP 108 (154)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~l~~~~~d~~i~i~~~ 108 (154)
..............+.+.. +.|-+ .|. .+++++-.|.+.+|++
T Consensus 197 ~~~r~~~~~s~~~~hNIP~--VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 197 VDERFYHVPSHQHSHNIPN--VSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccccccccccccCCCe--eEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 3221111111112222332 33433 233 7788888999888877
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.45 Score=31.04 Aligned_cols=105 Identities=12% Similarity=0.137 Sum_probs=61.1
Q ss_pred CCeEEEEEcCC-CCEEEEeeCCCe-EEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEcc-----CCeEEE
Q 038702 33 RAVHSAYFSPS-GSSLATTSFDDT-IGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNM-----TRTVEV 105 (154)
Q Consensus 33 ~~v~~~~~~~~-~~~l~~~~~d~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----d~~i~i 105 (154)
..-..+.|+|. ..-++.+=.-|+ ..++|....+.+........ ....- .-.|+|||.+|...-. -|.|-+
T Consensus 68 aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~--RHfyG-HGvfs~dG~~LYATEndfd~~rGViGv 144 (366)
T COG3490 68 ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEG--RHFYG-HGVFSPDGRLLYATENDFDPNRGVIGV 144 (366)
T ss_pred cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccC--ceeec-ccccCCCCcEEEeecCCCCCCCceEEE
Confidence 33445677773 344444444443 55678777766654432111 00011 2368999999877543 368999
Q ss_pred ecCCCc-cceeEEeCCCcCCcceEEEecCCCccEEEEEc
Q 038702 106 ISPAQR-RSVATLQSPYISAIPCRFHAHPHQVGTLAGAT 143 (154)
Q Consensus 106 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 143 (154)
||.+.+ +.+.++..+..+. ..+.+.+ +++.++.+.
T Consensus 145 Yd~r~~fqrvgE~~t~GiGp--Hev~lm~-DGrtlvvan 180 (366)
T COG3490 145 YDAREGFQRVGEFSTHGIGP--HEVTLMA-DGRTLVVAN 180 (366)
T ss_pred EecccccceecccccCCcCc--ceeEEec-CCcEEEEeC
Confidence 999844 3455555554444 4677777 777776654
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.65 Score=32.18 Aligned_cols=145 Identities=14% Similarity=0.200 Sum_probs=67.6
Q ss_pred ecCCCcEEEEEccCCCCCCCCCceeec----cc----CCeEEEEEcCCCCEEEEeeC------CCeEEEEecccccccee
Q 038702 4 SSTDGTACIWDLRSMATDKPEPTKVLS----HK----RAVHSAYFSPSGSSLATTSF------DDTIGIWSGVNFENTAM 69 (154)
Q Consensus 4 ~~~d~~v~vw~~~~~~~~~~~~~~~~~----~~----~~v~~~~~~~~~~~l~~~~~------d~~v~~~~~~~~~~~~~ 69 (154)
|-.++.|+|.|+.+... .++..+... +. ..-..+-.-|+|+.++++-. -|-+.+.|-++.+....
T Consensus 94 gL~SsrIyviD~~~dPr-~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~ 172 (461)
T PF05694_consen 94 GLRSSRIYVIDTKTDPR-KPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGR 172 (461)
T ss_dssp BTTT--EEEEE--S-TT-S-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE
T ss_pred eeccCcEEEEECCCCCC-CCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccce
Confidence 44677899999986432 222333321 11 22233444578888887432 23577777776554432
Q ss_pred EeecCCCCceEeEEEEEEcCCCcEEEEEc--------------------cCCeEEEecCCCccceeEEeCCCcCCcc--e
Q 038702 70 IHHNNQTGRWISSFRAIWGWDDSCIFIGN--------------------MTRTVEVISPAQRRSVATLQSPYISAIP--C 127 (154)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------------------~d~~i~i~~~~~~~~~~~~~~~~~~~~~--~ 127 (154)
..... +.....+..-|.|..+.++++. ....+.+||..+.+.++++.-......+ .
T Consensus 173 We~~~--~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEv 250 (461)
T PF05694_consen 173 WEKDR--GPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEV 250 (461)
T ss_dssp --SB---TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEE
T ss_pred eccCC--CCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEE
Confidence 22211 1122334556777777777753 2467999999999999999865544333 4
Q ss_pred EEEecCCCccEEEEEcCCCeEEEe
Q 038702 128 RFHAHPHQVGTLAGATGGGQVYVW 151 (154)
Q Consensus 128 ~~~~~~~~~~~l~~~~~d~~i~~w 151 (154)
.+..+|....-++.+.-..+|..|
T Consensus 251 RflH~P~~~~gFvg~aLss~i~~~ 274 (461)
T PF05694_consen 251 RFLHDPDANYGFVGCALSSSIWRF 274 (461)
T ss_dssp EE-SSTT--EEEEEEE--EEEEEE
T ss_pred EecCCCCccceEEEEeccceEEEE
Confidence 555667444456666566666555
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.85 Score=32.90 Aligned_cols=23 Identities=13% Similarity=0.052 Sum_probs=15.5
Q ss_pred CCCEEEEeeCCC-----eEEEEeccccc
Q 038702 43 SGSSLATTSFDD-----TIGIWSGVNFE 65 (154)
Q Consensus 43 ~~~~l~~~~~d~-----~v~~~~~~~~~ 65 (154)
++...+.|+.++ ++..||..+.+
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~ 378 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDK 378 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCe
Confidence 567777777653 47778877653
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.49 Score=33.49 Aligned_cols=97 Identities=16% Similarity=0.138 Sum_probs=52.8
Q ss_pred eecCCCcEEEEEccCCCCCCCCCceeecc----cCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCc
Q 038702 3 TSSTDGTACIWDLRSMATDKPEPTKVLSH----KRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGR 78 (154)
Q Consensus 3 ~~~~d~~v~vw~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (154)
.|-.|..|.-||++-..... .....+| .....|.+-..+| ++++|+.+|.|++||--...-...++. -+.
T Consensus 399 vGLs~n~vfriDpRv~~~~k--l~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPg---LG~ 472 (644)
T KOG2395|consen 399 VGLSDNSVFRIDPRVQGKNK--LAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPG---LGD 472 (644)
T ss_pred EeecCCceEEecccccCcce--eeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccc---cCC
Confidence 46678889999987544311 1111122 2334454444444 889999999999999732222222221 222
Q ss_pred eEeEEEEEEcCCCcEEEEEccCCeEEEecC
Q 038702 79 WISSFRAIWGWDDSCIFIGNMTRTVEVISP 108 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~ 108 (154)
.+. .+..+.+|++++..+ +..+.+.++
T Consensus 473 ~I~--hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 473 AIK--HVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred cee--eEEeeccCcEEEEec-ccEEEEEEE
Confidence 222 334466788776554 444554443
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.1 Score=39.91 Aligned_cols=88 Identities=9% Similarity=0.078 Sum_probs=52.5
Q ss_pred eecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeE
Q 038702 3 TSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISS 82 (154)
Q Consensus 3 ~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (154)
.+..|+.|++..+..... ...........++++|+|.|.+++.|-..|++.-|...-.....+-+. +.....++
T Consensus 173 v~l~dlsl~V~~~~~~~~----~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~P--p~~e~yrv 246 (1405)
T KOG3630|consen 173 VDLSDLSLRVKSTKQLAQ----NVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEP--PVEENYRV 246 (1405)
T ss_pred hhccccchhhhhhhhhhh----hhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCC--CcCCCcce
Confidence 344556666655543322 222235567889999999999999999999999887653322222111 11223455
Q ss_pred EEEEEcCCCcEEEE
Q 038702 83 FRAIWGWDDSCIFI 96 (154)
Q Consensus 83 ~~~~~~~~~~~l~~ 96 (154)
++++|-....+++.
T Consensus 247 l~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 247 LSVTWLSTQEFLVV 260 (1405)
T ss_pred eEEEEecceeEEEE
Confidence 56677655555444
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.83 E-value=1.2 Score=33.24 Aligned_cols=74 Identities=12% Similarity=0.047 Sum_probs=46.6
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCC---------Cccc---eeEEe------CCCcCCcceEEEecCC--CccEEE
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPA---------QRRS---VATLQ------SPYISAIPCRFHAHPH--QVGTLA 140 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~---------~~~~---~~~~~------~~~~~~~~~~~~~~~~--~~~~l~ 140 (154)
.+..+..+|+|.+++..|..|...+.=.+ .++. .+++. ..........+.|+|. .+..|+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~ 165 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV 165 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence 34467889999999998887754332221 1111 11111 1122233467899995 257888
Q ss_pred EEcCCCeEEEeeCC
Q 038702 141 GATGGGQVYVWTSD 154 (154)
Q Consensus 141 ~~~~d~~i~~wd~~ 154 (154)
.-..|+++++||+.
T Consensus 166 vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 166 VLTSDNTLRLYDIS 179 (717)
T ss_pred EEecCCEEEEEecC
Confidence 89999999999973
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=94.74 E-value=1 Score=31.95 Aligned_cols=147 Identities=10% Similarity=0.013 Sum_probs=73.2
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccC--CeEEEEEcC--CCCEEEEee---------CCCeEEEEeccccccce
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKR--AVHSAYFSP--SGSSLATTS---------FDDTIGIWSGVNFENTA 68 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~--~~~~l~~~~---------~d~~v~~~~~~~~~~~~ 68 (154)
+.++.++.|.-+|.++++. .-+...... .-..+.-+| .+..++.++ .++.+.-+|..+++..-
T Consensus 114 ~v~~~~g~v~AlD~~TG~~----~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 114 FFGTFDGRLVALDAETGKQ----VWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLW 189 (488)
T ss_pred EEecCCCeEEEEECCCCCE----eeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence 3456788888888887764 111111000 000111122 223444443 36788888988877654
Q ss_pred eEeecCCCC-----------------ceEeEEEEEEcCCCcEEEEEccCC------------------eEEEecCCCccc
Q 038702 69 MIHHNNQTG-----------------RWISSFRAIWGWDDSCIFIGNMTR------------------TVEVISPAQRRS 113 (154)
Q Consensus 69 ~~~~~~~~~-----------------~~~~~~~~~~~~~~~~l~~~~~d~------------------~i~i~~~~~~~~ 113 (154)
......... ..+.. ..+..+.+..++.++.++ .|.-+|..+++.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~-~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWA-SPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred EeeccCCCcCCCCCCCCCcceecCCCCCccC-CeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 333211100 00000 123344456677776554 788899999988
Q ss_pred eeEEeCCCcCC----cceEEEec---CCCc---cEEEEEcCCCeEEEeeC
Q 038702 114 VATLQSPYISA----IPCRFHAH---PHQV---GTLAGATGGGQVYVWTS 153 (154)
Q Consensus 114 ~~~~~~~~~~~----~~~~~~~~---~~~~---~~l~~~~~d~~i~~wd~ 153 (154)
+-......... ........ ..++ ..++.++.+|.+...|.
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~ 318 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDR 318 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEEC
Confidence 76654211100 00000110 0122 25777888888887775
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.89 Score=31.29 Aligned_cols=146 Identities=12% Similarity=0.029 Sum_probs=73.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee--c------ccCCeEEEEEcC-----CC---CEEEEeeCCCeEEEEeccc-
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL--S------HKRAVHSAYFSP-----SG---SSLATTSFDDTIGIWSGVN- 63 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~--~------~~~~v~~~~~~~-----~~---~~l~~~~~d~~v~~~~~~~- 63 (154)
++.|..+|.+.|.|++.... ..... . ....++++.|+- ++ -.+++|...|.+.+|.+.-
T Consensus 100 vaigy~~G~l~viD~RGPav----I~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~ 175 (395)
T PF08596_consen 100 VAIGYESGSLVVIDLRGPAV----IYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPS 175 (395)
T ss_dssp EEEEETTSEEEEEETTTTEE----EEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-
T ss_pred EEEEecCCcEEEEECCCCeE----EeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecC
Confidence 36789999999999976442 11100 1 244688898864 22 3788899999999998863
Q ss_pred cccce--e-EeecCCCCceEeEEEEEEcC--------------------CCcEEEEEccCCeEEEecCCCccceeEEeCC
Q 038702 64 FENTA--M-IHHNNQTGRWISSFRAIWGW--------------------DDSCIFIGNMTRTVEVISPAQRRSVATLQSP 120 (154)
Q Consensus 64 ~~~~~--~-~~~~~~~~~~~~~~~~~~~~--------------------~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 120 (154)
..... . ..........+..+.. ++. .-+-++....+..+|++...+.+......
T Consensus 176 ~~g~f~v~~~~~~~~~~~~i~~I~~-i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~-- 252 (395)
T PF08596_consen 176 SNGRFSVQFAGATTNHDSPILSIIP-INADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSF-- 252 (395)
T ss_dssp GGG-EEEEEEEEE--SS----EEEE-EETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE---
T ss_pred CCCceEEEEeeccccCCCceEEEEE-EECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceee--
Confidence 21111 1 1111011111111111 110 01123334457789999988777665554
Q ss_pred CcCCcceEEEec----CCCccEEEEEcCCCeEEEeeC
Q 038702 121 YISAIPCRFHAH----PHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 121 ~~~~~~~~~~~~----~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.....+....+- ...+..|+.-..+|.|+++.+
T Consensus 253 ~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SL 289 (395)
T PF08596_consen 253 DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSL 289 (395)
T ss_dssp SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEET
T ss_pred ccccccceEEEEeecccCCceEEEEEECCCcEEEEEC
Confidence 222222223331 114556788889999999865
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=94.50 E-value=1.1 Score=31.13 Aligned_cols=88 Identities=23% Similarity=0.254 Sum_probs=49.5
Q ss_pred EEEEcCCCCEEEEeeCCCeEEE---Eeccc-c--ccceeEe----ecCCCCceEeEEE-EEE--------cCCCcEEEEE
Q 038702 37 SAYFSPSGSSLATTSFDDTIGI---WSGVN-F--ENTAMIH----HNNQTGRWISSFR-AIW--------GWDDSCIFIG 97 (154)
Q Consensus 37 ~~~~~~~~~~l~~~~~d~~v~~---~~~~~-~--~~~~~~~----~~~~~~~~~~~~~-~~~--------~~~~~~l~~~ 97 (154)
.++.+|+++.++.+..+..+.+ |+... . ....... -..+.+..+..+. +-+ .+|...++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 5678999999999887776665 54322 1 1111111 1112223444332 222 2456789999
Q ss_pred ccCCeEEEecCCCccceeEEeCCCcCCc
Q 038702 98 NMTRTVEVISPAQRRSVATLQSPYISAI 125 (154)
Q Consensus 98 ~~d~~i~i~~~~~~~~~~~~~~~~~~~~ 125 (154)
..+|.|++|.. +|.++..-.-|+..+.
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~ 112 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVL 112 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceE
Confidence 99999999986 4444433333444443
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.89 Score=30.05 Aligned_cols=109 Identities=13% Similarity=0.111 Sum_probs=55.3
Q ss_pred cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEec-C
Q 038702 30 SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVIS-P 108 (154)
Q Consensus 30 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~-~ 108 (154)
.-.+.+..+.-+++|++++++.......-||.-.. ....|.......++ .+.|.|++.+.+.+ ..|.|++=+ .
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~---~w~~~~r~~~~riq--~~gf~~~~~lw~~~-~Gg~~~~s~~~ 215 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT---TWQPHNRNSSRRIQ--SMGFSPDGNLWMLA-RGGQIQFSDDP 215 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-S---S-EEEE--SSS-EE--EEEE-TTS-EEEEE-TTTEEEEEE-T
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCc---cceEEccCccceeh--hceecCCCCEEEEe-CCcEEEEccCC
Confidence 44577888889999999988877776667764321 22233333334444 56899998876655 788888776 2
Q ss_pred CCccceeE--EeCCCcCCcceEEEecCCCccEEEEEcCC
Q 038702 109 AQRRSVAT--LQSPYISAIPCRFHAHPHQVGTLAGATGG 145 (154)
Q Consensus 109 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 145 (154)
...+.... ........-...+++.+ +.+..++|+..
T Consensus 216 ~~~~~w~~~~~~~~~~~~~~ld~a~~~-~~~~wa~gg~G 253 (302)
T PF14870_consen 216 DDGETWSEPIIPIKTNGYGILDLAYRP-PNEIWAVGGSG 253 (302)
T ss_dssp TEEEEE---B-TTSS--S-EEEEEESS-SS-EEEEESTT
T ss_pred CCccccccccCCcccCceeeEEEEecC-CCCEEEEeCCc
Confidence 22222111 11111222236789988 56677766554
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.84 Score=29.40 Aligned_cols=65 Identities=9% Similarity=-0.027 Sum_probs=39.8
Q ss_pred CCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccce
Q 038702 42 PSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSV 114 (154)
Q Consensus 42 ~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~ 114 (154)
..++.|+.|+.+| +.+++............... +..+...++-+.+++-+ |+.++++++......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~------I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~ 69 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSS------ITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPV 69 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeecce------EEEEEEecccCEEEEEc-CCccEEEEchhhccc
Confidence 4678999999999 88888833332222222111 22444556656555554 599999998755433
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.21 Score=22.36 Aligned_cols=27 Identities=4% Similarity=0.052 Sum_probs=22.0
Q ss_pred EEEEcCCC---cEEEEEccCCeEEEecCCC
Q 038702 84 RAIWGWDD---SCIFIGNMTRTVEVISPAQ 110 (154)
Q Consensus 84 ~~~~~~~~---~~l~~~~~d~~i~i~~~~~ 110 (154)
.+.|+|++ .+|+.+-..+.+.++|+++
T Consensus 5 ~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 5 CCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred EEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 46799754 4888888889999999995
|
It contains a characteristic DLL sequence motif. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.14 E-value=1.6 Score=31.73 Aligned_cols=101 Identities=15% Similarity=0.110 Sum_probs=53.8
Q ss_pred CCCEEEEeeCCCe-----EEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCC------eEEEecCCCc
Q 038702 43 SGSSLATTSFDDT-----IGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTR------TVEVISPAQR 111 (154)
Q Consensus 43 ~~~~l~~~~~d~~-----v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~------~i~i~~~~~~ 111 (154)
+|...+.|+.||. +-.||.++.+-......... ..... ...-++...++|+.++ .+..||..+.
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~----r~~~g-v~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~ 454 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR----RSGHG-VAVLGGKLYIIGGGDGSSNCLNSVECYDPETN 454 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccCCCCcc----eeeeE-EEEECCEEEEEcCcCCCccccceEEEEcCCCC
Confidence 6778888888864 55666665543322211110 01111 1223688888888554 5778888765
Q ss_pred c--ceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCe-----EEEeeC
Q 038702 112 R--SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQ-----VYVWTS 153 (154)
Q Consensus 112 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~-----i~~wd~ 153 (154)
+ .+..+....... .++.. ++.+++.|+.|+. |..||+
T Consensus 455 ~W~~~~~M~~~R~~~---g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp 498 (571)
T KOG4441|consen 455 TWTLIAPMNTRRSGF---GVAVL--NGKIYVVGGFDGTSALSSVERYDP 498 (571)
T ss_pred ceeecCCcccccccc---eEEEE--CCEEEEECCccCCCccceEEEEcC
Confidence 4 333333221111 12222 5678888887762 555654
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.13 E-value=1.5 Score=31.40 Aligned_cols=101 Identities=13% Similarity=0.086 Sum_probs=48.6
Q ss_pred CCCEEEEeeCC------CeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccC--------CeEEEecC
Q 038702 43 SGSSLATTSFD------DTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMT--------RTVEVISP 108 (154)
Q Consensus 43 ~~~~l~~~~~d------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--------~~i~i~~~ 108 (154)
+++..+.|+.+ ..+..||+.+.+-...... +.+.... . +...++..++.|+.+ ..+.+||.
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~--p~~r~~~--~-~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~ 463 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPL--PISHYGG--C-AIYHDGKIYVIGGISYIDNIKVYNIVESYNP 463 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCC--CccccCc--e-EEEECCEEEEECCccCCCCCcccceEEEecC
Confidence 56666666632 3577888776432221111 1110001 1 122356666777643 23888998
Q ss_pred CCccc--eeEEeCCCcCCcceEEEecCCCccEEEEEcCC-----CeEEEeeC
Q 038702 109 AQRRS--VATLQSPYISAIPCRFHAHPHQVGTLAGATGG-----GQVYVWTS 153 (154)
Q Consensus 109 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----~~i~~wd~ 153 (154)
.+.+- +..+..+.... ..... ++.+++.|+.+ ..+.+||+
T Consensus 464 ~~~~W~~~~~~~~~r~~~--~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~ 510 (534)
T PHA03098 464 VTNKWTELSSLNFPRINA--SLCIF---NNKIYVVGGDKYEYYINEIEVYDD 510 (534)
T ss_pred CCCceeeCCCCCcccccc--eEEEE---CCEEEEEcCCcCCcccceeEEEeC
Confidence 76543 22221111111 11222 45677777654 46777775
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.34 Score=37.35 Aligned_cols=117 Identities=9% Similarity=0.038 Sum_probs=72.4
Q ss_pred CCeEEEEEcCCCCEEEE--eeCCCeEEEEeccccccce-----eE-eecCCCCceEeEEEEEEcCCC-cEEEEEccCCeE
Q 038702 33 RAVHSAYFSPSGSSLAT--TSFDDTIGIWSGVNFENTA-----MI-HHNNQTGRWISSFRAIWGWDD-SCIFIGNMTRTV 103 (154)
Q Consensus 33 ~~v~~~~~~~~~~~l~~--~~~d~~v~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i 103 (154)
-+|..+...+++...+. .+.+-.|..+|++...... .+ .+.......+....+.|+|.- ...+....|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 35556666677654433 3445579999998754332 11 122222334455577888864 345667789999
Q ss_pred EEecCCCccc-eeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 104 EVISPAQRRS-VATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 104 ~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
++..+..... ...+ .......+++|+| .+..++.|...|++.-|..
T Consensus 181 ~V~~~~~~~~~v~s~---p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P 227 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSF---PVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEP 227 (1405)
T ss_pred hhhhhhhhhhhhccc---CcccceeeEEecc-ccceeeEecCCCeEEEeec
Confidence 9887763322 2222 2233347899999 8899999999999887643
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.88 Score=28.54 Aligned_cols=71 Identities=14% Similarity=-0.017 Sum_probs=44.4
Q ss_pred CeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE----eecC-------CCCceEeEEEEEEcCCCcEEEEEccCCe
Q 038702 34 AVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI----HHNN-------QTGRWISSFRAIWGWDDSCIFIGNMTRT 102 (154)
Q Consensus 34 ~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~----~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 102 (154)
++..+. .+++++++-+.+|.+++||+.+.+..... .-.. .....+ ..+..+.+|.-+++-+ +|.
T Consensus 14 ~~~~l~--~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i--~~~~lt~~G~PiV~ls-ng~ 88 (219)
T PF07569_consen 14 PVSFLE--CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNI--TSCSLTSNGVPIVTLS-NGD 88 (219)
T ss_pred ceEEEE--eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcE--EEEEEcCCCCEEEEEe-CCC
Confidence 444444 47889999999999999999987653211 0000 112222 3445567787766654 567
Q ss_pred EEEecCC
Q 038702 103 VEVISPA 109 (154)
Q Consensus 103 i~i~~~~ 109 (154)
.+.|+..
T Consensus 89 ~y~y~~~ 95 (219)
T PF07569_consen 89 SYSYSPD 95 (219)
T ss_pred EEEeccc
Confidence 7888765
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.89 E-value=1.5 Score=30.72 Aligned_cols=122 Identities=16% Similarity=0.117 Sum_probs=67.6
Q ss_pred CCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEE
Q 038702 6 TDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFR 84 (154)
Q Consensus 6 ~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
..|.+.-|.+...+.. .+..+. ...++|.++.|++|.+.++.--.+++|.+.+....+......+....+ ....+.
T Consensus 41 rSggatgvvvkgpndD--VpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k-~~~IlG 117 (657)
T KOG2377|consen 41 RSGGATGVVVKGPNDD--VPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTK-NANILG 117 (657)
T ss_pred ecCCeeEEEEeCCCCC--CCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccC-cceeEE
Confidence 3444555555443321 133333 567799999999999999999999999999885544443332222111 113445
Q ss_pred EEEcCCCcEEEEEccCCeEEEecCCC-ccceeEEeCCCcCCcceEEEecCC
Q 038702 85 AIWGWDDSCIFIGNMTRTVEVISPAQ-RRSVATLQSPYISAIPCRFHAHPH 134 (154)
Q Consensus 85 ~~~~~~~~~l~~~~~d~~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 134 (154)
..|+.+ .-++.-...| +.+|.+.. .+.++..+.+..++. -+.|+++
T Consensus 118 F~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvn--Wy~yc~e 164 (657)
T KOG2377|consen 118 FCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVN--WYMYCPE 164 (657)
T ss_pred EEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCcc--EEEEccc
Confidence 577755 4444444333 56665442 223334444433332 3567773
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.88 E-value=1.2 Score=29.52 Aligned_cols=121 Identities=12% Similarity=0.093 Sum_probs=56.9
Q ss_pred eecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEcc--------
Q 038702 28 VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNM-------- 99 (154)
Q Consensus 28 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------- 99 (154)
.+.+.+.+.++..-..+..|+++. .+ +.+++.++...................=.....|+|.+.++...
T Consensus 61 ~~~~p~~~~~~~~~d~~g~Lv~~~-~g-~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~ 138 (307)
T COG3386 61 VFPSPGGFSSGALIDAGGRLIACE-HG-VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSE 138 (307)
T ss_pred EEECCCCcccceeecCCCeEEEEc-cc-cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccc
Confidence 334455555555444444555543 22 44556544433222211110000001113455778877665443
Q ss_pred ---CCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCcc-EEEEEcCCCeEEEeeCC
Q 038702 100 ---TRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVG-TLAGATGGGQVYVWTSD 154 (154)
Q Consensus 100 ---d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~~wd~~ 154 (154)
-|.|+-++. .+.....+..+ -.....++|+| ++. ++++=+..+.|..|+++
T Consensus 139 ~~~~G~lyr~~p-~g~~~~l~~~~--~~~~NGla~Sp-Dg~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 139 ERPTGSLYRVDP-DGGVVRLLDDD--LTIPNGLAFSP-DGKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred cCCcceEEEEcC-CCCEEEeecCc--EEecCceEECC-CCCEEEEEeCCCCeEEEEecC
Confidence 122333343 34444433321 23446899999 554 44555566888877653
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=93.59 E-value=1.8 Score=30.67 Aligned_cols=114 Identities=8% Similarity=-0.008 Sum_probs=59.8
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceee--cccCCeE--EEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCC
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVL--SHKRAVH--SAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTG 77 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~--~~~~~v~--~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~ 77 (154)
..++.++.|.-.|..+++.......... .....+. .+... ++..++.++.++.|.-+|.++++..-.........
T Consensus 65 y~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~ 143 (488)
T cd00216 65 YFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQVP 143 (488)
T ss_pred EEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCCCcC
Confidence 4566778888888887764221111000 0000010 01111 22678888899999999999887764443221100
Q ss_pred ceEeEEEEEEcC--CCcEEEEEc---------cCCeEEEecCCCccceeEEeC
Q 038702 78 RWISSFRAIWGW--DDSCIFIGN---------MTRTVEVISPAQRRSVATLQS 119 (154)
Q Consensus 78 ~~~~~~~~~~~~--~~~~l~~~~---------~d~~i~i~~~~~~~~~~~~~~ 119 (154)
. .+.+.-+| .+..++.++ .++.+.-+|..+++.+-....
T Consensus 144 ~---~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 144 P---GYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred c---ceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 0 00000111 123444443 367889999999987766553
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.46 E-value=1.2 Score=28.29 Aligned_cols=98 Identities=5% Similarity=0.008 Sum_probs=58.5
Q ss_pred CCeEEEEEcCCCCEEEEe-eCCCeEEEEe--ccccccc---eeE--eecCCCCceEeEEEEEEcCCCcEEEEEccCCeEE
Q 038702 33 RAVHSAYFSPSGSSLATT-SFDDTIGIWS--GVNFENT---AMI--HHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVE 104 (154)
Q Consensus 33 ~~v~~~~~~~~~~~l~~~-~~d~~v~~~~--~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 104 (154)
+--..++|+.+.+.+..- +.+-+|.-|| ..++... .++ ....+.+..... .++...+|.+.++.-..++|.
T Consensus 158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PD-Gm~ID~eG~L~Va~~ng~~V~ 236 (310)
T KOG4499|consen 158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPD-GMTIDTEGNLYVATFNGGTVQ 236 (310)
T ss_pred cCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCC-cceEccCCcEEEEEecCcEEE
Confidence 334578888777666543 4566776677 5444321 111 111111110000 122345788888888899999
Q ss_pred EecCCCccceeEEeCCCcCCcceEEEecC
Q 038702 105 VISPAQRRSVATLQSPYISAIPCRFHAHP 133 (154)
Q Consensus 105 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (154)
..|..+|+.+.+++-+.... .+++|-.
T Consensus 237 ~~dp~tGK~L~eiklPt~qi--tsccFgG 263 (310)
T KOG4499|consen 237 KVDPTTGKILLEIKLPTPQI--TSCCFGG 263 (310)
T ss_pred EECCCCCcEEEEEEcCCCce--EEEEecC
Confidence 99999999999998664443 4566654
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=93.43 E-value=2.4 Score=31.56 Aligned_cols=111 Identities=7% Similarity=-0.028 Sum_probs=59.8
Q ss_pred CeEEEEEcCCCCEEEEeeC-----CCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccC------Ce
Q 038702 34 AVHSAYFSPSGSSLATTSF-----DDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMT------RT 102 (154)
Q Consensus 34 ~v~~~~~~~~~~~l~~~~~-----d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------~~ 102 (154)
.+..+.++|++++|+.+.. .-.+++.|+.++....... .. +. ..++|.++++.|+....+ ..
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i-~~-----~~-~~~~w~~D~~~~~y~~~~~~~~~~~~ 200 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL-DN-----VE-PSFVWANDSWTFYYVRKHPVTLLPYQ 200 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc-cC-----cc-eEEEEeeCCCEEEEEEecCCCCCCCE
Confidence 4667889999998876532 2358888887664221110 00 11 246899998866665432 35
Q ss_pred EEEecCCCc--cceeEEeCCCcCCcceEEEecCCCccEEEEEc---CCCeEEEeeC
Q 038702 103 VEVISPAQR--RSVATLQSPYISAIPCRFHAHPHQVGTLAGAT---GGGQVYVWTS 153 (154)
Q Consensus 103 i~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~d~~i~~wd~ 153 (154)
|+.+++.++ +....+........ .. .+.+.++.+++..+ .++.+.+++.
T Consensus 201 v~~h~lgt~~~~d~lv~~e~~~~~~-~~-~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 201 VWRHTIGTPASQDELVYEEKDDTFY-VS-LHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred EEEEECCCChhHCeEEEeeCCCCEE-EE-EEEcCCCCEEEEEEECCccccEEEEEC
Confidence 777788877 33333332222111 22 22232445443333 3456777663
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=93.34 E-value=1.2 Score=30.52 Aligned_cols=75 Identities=15% Similarity=0.164 Sum_probs=38.0
Q ss_pred EEcCCCCEEEEeeC-CC--eEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCcccee
Q 038702 39 YFSPSGSSLATTSF-DD--TIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVA 115 (154)
Q Consensus 39 ~~~~~~~~l~~~~~-d~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~ 115 (154)
+|.++|++|+.++. || .+.+.|+.+.+...+....... .+....+|+.+.++.......|+-.|+.+.+...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~-----~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~ 116 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDN-----TFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERV 116 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B------TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCC-----ccceEEecCCCeEEEEECCCeEEEEECCcCcEEE
Confidence 56778977666554 54 4666677777655544322110 0112357788877665556688888998877544
Q ss_pred EEe
Q 038702 116 TLQ 118 (154)
Q Consensus 116 ~~~ 118 (154)
.+.
T Consensus 117 vy~ 119 (386)
T PF14583_consen 117 VYE 119 (386)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=93.16 E-value=2 Score=29.92 Aligned_cols=117 Identities=9% Similarity=0.147 Sum_probs=54.3
Q ss_pred eEEEEEcCCCCEEEEee--------------------CCCeEEEEeccccccceeEeecCCCCceEeEEEEEE--cCCCc
Q 038702 35 VHSAYFSPSGSSLATTS--------------------FDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIW--GWDDS 92 (154)
Q Consensus 35 v~~~~~~~~~~~l~~~~--------------------~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 92 (154)
-+.+-|.|.-+.++++. ...++.+||+.+.+....+..... + ...+.+.| .|+..
T Consensus 183 gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~-g--~~pLEvRflH~P~~~ 259 (461)
T PF05694_consen 183 GYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE-G--QMPLEVRFLHDPDAN 259 (461)
T ss_dssp ---EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT-E--EEEEEEEE-SSTT--
T ss_pred CCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC-C--CceEEEEecCCCCcc
Confidence 34566677666666643 246899999998888776654432 1 23334444 45444
Q ss_pred EEEEE-ccCCeEEEe-cCCCcc----ceeEEeCC--------Cc-------CCcceEEEecCCCccEEEEEcCCCeEEEe
Q 038702 93 CIFIG-NMTRTVEVI-SPAQRR----SVATLQSP--------YI-------SAIPCRFHAHPHQVGTLAGATGGGQVYVW 151 (154)
Q Consensus 93 ~l~~~-~~d~~i~i~-~~~~~~----~~~~~~~~--------~~-------~~~~~~~~~~~~~~~~l~~~~~d~~i~~w 151 (154)
+=+++ ...++|..| ....++ .+..+... .. ....+.+..+.++.-+.++.-.+|.|+.|
T Consensus 260 ~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqY 339 (461)
T PF05694_consen 260 YGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQY 339 (461)
T ss_dssp EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEE
T ss_pred ceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEE
Confidence 43333 234444444 323221 12222110 11 23457788888554445666689999999
Q ss_pred eCC
Q 038702 152 TSD 154 (154)
Q Consensus 152 d~~ 154 (154)
|++
T Consensus 340 DIS 342 (461)
T PF05694_consen 340 DIS 342 (461)
T ss_dssp E-S
T ss_pred ecC
Confidence 984
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.03 E-value=2.2 Score=29.94 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=30.2
Q ss_pred cCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEecc
Q 038702 5 STDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV 62 (154)
Q Consensus 5 ~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~ 62 (154)
..++.|.+||..+++ ........ +|..+-|++++++++..+.+. +.+++..
T Consensus 123 ~~~~~i~~yDw~~~~-----~i~~i~v~-~vk~V~Ws~~g~~val~t~~~-i~il~~~ 173 (443)
T PF04053_consen 123 KSSDFICFYDWETGK-----LIRRIDVS-AVKYVIWSDDGELVALVTKDS-IYILKYN 173 (443)
T ss_dssp EETTEEEEE-TTT-------EEEEESS--E-EEEEE-TTSSEEEEE-S-S-EEEEEE-
T ss_pred ECCCCEEEEEhhHcc-----eeeEEecC-CCcEEEEECCCCEEEEEeCCe-EEEEEec
Confidence 344579999998766 44444433 389999999999999988664 6665543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=92.96 E-value=2.1 Score=29.38 Aligned_cols=107 Identities=12% Similarity=-0.018 Sum_probs=47.0
Q ss_pred EEEcCCCCEEEEee-----CCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCC-----------
Q 038702 38 AYFSPSGSSLATTS-----FDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTR----------- 101 (154)
Q Consensus 38 ~~~~~~~~~l~~~~-----~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~----------- 101 (154)
=-|.|+|..+..-+ .+..|.-+|+.+.+....... .. +...--++++++++-=+.|.
T Consensus 243 Efw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~-p~------~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~ 315 (386)
T PF14583_consen 243 EFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM-PW------CSHFMSSPDGKLFVGDGGDAPVDVADAGGYK 315 (386)
T ss_dssp EEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE--S------EEEEEE-TTSSEEEEEE--------------
T ss_pred ccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC-Cc------eeeeEEcCCCCEEEecCCCCCccccccccce
Confidence 35788888665422 244566677777655432221 11 12334467887775544332
Q ss_pred -----eEEEecCCCccceeEEe--------CCCcCCcceEEEecCCCccEEEEEcCCCeEEEe
Q 038702 102 -----TVEVISPAQRRSVATLQ--------SPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 151 (154)
Q Consensus 102 -----~i~i~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w 151 (154)
.|+++++..++...... .++....-....|+|++...|.++...|...||
T Consensus 316 ~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 316 IENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp -----EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEE
T ss_pred ecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEE
Confidence 46667777655322111 011112224678999554556666778876666
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=92.69 E-value=2.3 Score=29.30 Aligned_cols=100 Identities=14% Similarity=0.116 Sum_probs=56.4
Q ss_pred ecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCC-----------eEEEEeccccccc--eeE
Q 038702 4 SSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDD-----------TIGIWSGVNFENT--AMI 70 (154)
Q Consensus 4 ~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----------~v~~~~~~~~~~~--~~~ 70 (154)
|++...++++|+.+++. ....+..... ..+.|.++++.|+....+. .|..|++.+.... .++
T Consensus 146 G~e~~~l~v~Dl~tg~~----l~d~i~~~~~-~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvf 220 (414)
T PF02897_consen 146 GSEWYTLRVFDLETGKF----LPDGIENPKF-SSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVF 220 (414)
T ss_dssp TSSEEEEEEEETTTTEE----EEEEEEEEES-EEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEE
T ss_pred CCceEEEEEEECCCCcC----cCCccccccc-ceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEE
Confidence 44445688999887752 2222222211 2399999988776654332 3778888776554 333
Q ss_pred eecCCCCceEeEEEEEEcCCCcEEEEEcc---C-CeEEEecCCCc
Q 038702 71 HHNNQTGRWISSFRAIWGWDDSCIFIGNM---T-RTVEVISPAQR 111 (154)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---d-~~i~i~~~~~~ 111 (154)
..... . . ..+.+..++++++++.... + ..+.+.++..+
T Consensus 221 e~~~~-~-~-~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 221 EEPDE-P-F-WFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp C-TTC-T-T-SEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred eecCC-C-c-EEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 22221 1 1 1335677999998775432 2 45788888764
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.10 E-value=2.3 Score=27.97 Aligned_cols=55 Identities=22% Similarity=0.294 Sum_probs=34.1
Q ss_pred EEcCCCCEEEEeeCC-----CeEEEEeccccccc-eeEeecCCCCceEeEEEEEEcCCCcEEEEEc
Q 038702 39 YFSPSGSSLATTSFD-----DTIGIWSGVNFENT-AMIHHNNQTGRWISSFRAIWGWDDSCIFIGN 98 (154)
Q Consensus 39 ~~~~~~~~l~~~~~d-----~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 98 (154)
.|||+|.+|++.-.| |.|=+||.+..-.. ..+.... +-.-.+.+.+||+.++.+.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~G-----iGpHev~lm~DGrtlvvan 180 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHG-----IGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCC-----cCcceeEEecCCcEEEEeC
Confidence 689999999876443 56889998743221 1221111 1122456889999887764
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=92.03 E-value=3.6 Score=29.99 Aligned_cols=100 Identities=14% Similarity=0.120 Sum_probs=52.7
Q ss_pred CCCEEEEeeCCC------eEEEEeccccccceeEeecCC-CCceEeEEEEEEcCCCcEEEEEccCC-----eEEEecCCC
Q 038702 43 SGSSLATTSFDD------TIGIWSGVNFENTAMIHHNNQ-TGRWISSFRAIWGWDDSCIFIGNMTR-----TVEVISPAQ 110 (154)
Q Consensus 43 ~~~~l~~~~~d~------~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~-----~i~i~~~~~ 110 (154)
+|...+.|+.++ ++..||..+..-......... ....+. .-++.+.+.|+.|+ .|..||.++
T Consensus 427 ~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a------~~~~~iYvvGG~~~~~~~~~VE~ydp~~ 500 (571)
T KOG4441|consen 427 GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVA------VLNGKIYVVGGFDGTSALSSVERYDPET 500 (571)
T ss_pred CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEE------EECCEEEEECCccCCCccceEEEEcCCC
Confidence 677778887554 466777766543322211111 111111 22677888888776 377788876
Q ss_pred ccceeE--EeCCCcCCcceEEEecCCCccEEEEEcCCCe-----EEEeeC
Q 038702 111 RRSVAT--LQSPYISAIPCRFHAHPHQVGTLAGATGGGQ-----VYVWTS 153 (154)
Q Consensus 111 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~-----i~~wd~ 153 (154)
.+-... +....... .++.. ++...+.|+.||. |..||.
T Consensus 501 ~~W~~v~~m~~~rs~~---g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp 545 (571)
T KOG4441|consen 501 NQWTMVAPMTSPRSAV---GVVVL--GGKLYAVGGFDGNNNLNTVECYDP 545 (571)
T ss_pred CceeEcccCccccccc---cEEEE--CCEEEEEecccCccccceeEEcCC
Confidence 543322 22121111 12222 5677888888774 555554
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=92.03 E-value=2.2 Score=27.60 Aligned_cols=109 Identities=13% Similarity=0.060 Sum_probs=66.2
Q ss_pred CCeEEEEEcCCCCEEEEeeCCC--eEEEEeccccccceeEeecC-CCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCC
Q 038702 33 RAVHSAYFSPSGSSLATTSFDD--TIGIWSGVNFENTAMIHHNN-QTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPA 109 (154)
Q Consensus 33 ~~v~~~~~~~~~~~l~~~~~d~--~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~ 109 (154)
.....+.|..++.++-+.+.-| .|+.+|+.+++......-.. ..++-+.. . +++...-.=.++...+||..
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~-----~-~d~l~qLTWk~~~~f~yd~~ 118 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITI-----L-GDKLYQLTWKEGTGFVYDPN 118 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEE-----E-TTEEEEEESSSSEEEEEETT
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEE-----E-CCEEEEEEecCCeEEEEccc
Confidence 3556788878888888877766 68889999887654433221 11111211 1 34444444578899999999
Q ss_pred CccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 110 QRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+.+.+.++.-.. .. +.++. ++..|+.+.....++++|.
T Consensus 119 tl~~~~~~~y~~-EG--WGLt~---dg~~Li~SDGS~~L~~~dP 156 (264)
T PF05096_consen 119 TLKKIGTFPYPG-EG--WGLTS---DGKRLIMSDGSSRLYFLDP 156 (264)
T ss_dssp TTEEEEEEE-SS-S----EEEE---CSSCEEEE-SSSEEEEE-T
T ss_pred cceEEEEEecCC-cc--eEEEc---CCCEEEEECCccceEEECC
Confidence 988888876432 22 34453 4566766666778888886
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=91.81 E-value=2.3 Score=27.24 Aligned_cols=108 Identities=23% Similarity=0.266 Sum_probs=53.3
Q ss_pred EEcCCCCEEEEeeC-C--CeEEEEeccc---cccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCC-eEEEecCCC-
Q 038702 39 YFSPSGSSLATTSF-D--DTIGIWSGVN---FENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTR-TVEVISPAQ- 110 (154)
Q Consensus 39 ~~~~~~~~l~~~~~-d--~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~i~~~~~- 110 (154)
.+-++|+++.+|+. + ..+++++... .............+++-. +..--+||+.++.|+... +..+|..+.
T Consensus 73 ~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYp--T~~~L~DG~vlIvGG~~~~t~E~~P~~~~ 150 (243)
T PF07250_consen 73 AFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYP--TATTLPDGRVLIVGGSNNPTYEFWPPKGP 150 (243)
T ss_pred CCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccc--cceECCCCCEEEEeCcCCCcccccCCccC
Confidence 45668888888775 2 3477777544 111111111112222222 234467999999988775 345554421
Q ss_pred ccceeEE---eC---CCcCCcceEEEecCCCccEEEEEcCCCeEE
Q 038702 111 RRSVATL---QS---PYISAIPCRFHAHPHQVGTLAGATGGGQVY 149 (154)
Q Consensus 111 ~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 149 (154)
......+ .. ......--.+...| ++++|+.+..+..|.
T Consensus 151 ~~~~~~~~~l~~~~~~~~~nlYP~~~llP-dG~lFi~an~~s~i~ 194 (243)
T PF07250_consen 151 GPGPVTLPFLSQTSDTLPNNLYPFVHLLP-DGNLFIFANRGSIIY 194 (243)
T ss_pred CCCceeeecchhhhccCccccCceEEEcC-CCCEEEEEcCCcEEE
Confidence 1111111 10 01111111244556 888998888765554
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=91.71 E-value=2.9 Score=28.20 Aligned_cols=149 Identities=13% Similarity=0.081 Sum_probs=76.3
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceee-cccCCeE-EEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCC----
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVH-SAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQ---- 75 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~-~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~---- 75 (154)
.+-+.||.+.-..+.............+ ...+++. .-.+...+..++--+.+|.|+--|+............-.
T Consensus 151 ~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e 230 (342)
T PF06433_consen 151 SMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAE 230 (342)
T ss_dssp EEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHH
T ss_pred EEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccc
Confidence 4557788888888875443111111222 2222222 334455566666678899998888876543221111000
Q ss_pred -CCceEe--EEEEEEcCCCcEEEEEc--------cCC--eEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEE-E
Q 038702 76 -TGRWIS--SFRAIWGWDDSCIFIGN--------MTR--TVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLA-G 141 (154)
Q Consensus 76 -~~~~~~--~~~~~~~~~~~~l~~~~--------~d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~ 141 (154)
...+-. --.+++++....|..-- +|+ .|.++|+.+++.+..+...+. . .+++.+.++.-+|. .
T Consensus 231 ~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~-~--~Si~Vsqd~~P~L~~~ 307 (342)
T PF06433_consen 231 KADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHP-I--DSIAVSQDDKPLLYAL 307 (342)
T ss_dssp HHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEE-E--SEEEEESSSS-EEEEE
T ss_pred cccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCc-c--ceEEEccCCCcEEEEE
Confidence 000000 00135555444333321 122 478889999999988874322 2 24555553434554 4
Q ss_pred EcCCCeEEEeeC
Q 038702 142 ATGGGQVYVWTS 153 (154)
Q Consensus 142 ~~~d~~i~~wd~ 153 (154)
...++.+.+||.
T Consensus 308 ~~~~~~l~v~D~ 319 (342)
T PF06433_consen 308 SAGDGTLDVYDA 319 (342)
T ss_dssp ETTTTEEEEEET
T ss_pred cCCCCeEEEEeC
Confidence 557899999996
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=91.50 E-value=0.77 Score=32.93 Aligned_cols=35 Identities=29% Similarity=0.186 Sum_probs=26.5
Q ss_pred CCeEEEEEcC----CCCEEEEeeCCCeEEEEeccccccc
Q 038702 33 RAVHSAYFSP----SGSSLATTSFDDTIGIWSGVNFENT 67 (154)
Q Consensus 33 ~~v~~~~~~~----~~~~l~~~~~d~~v~~~~~~~~~~~ 67 (154)
+....+++++ +..++++.+.|+++|+||+.+....
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~ 253 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCL 253 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEE
Confidence 4456667766 6779999999999999999998873
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=91.01 E-value=5.6 Score=30.21 Aligned_cols=101 Identities=13% Similarity=0.159 Sum_probs=58.9
Q ss_pred CCeEEEEEcC-CCCEEEEeeCCCeEEEEecccc--ccceeE-eecCCCCc-------eEeEEEEEEcCCCcEEEEEccCC
Q 038702 33 RAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNF--ENTAMI-HHNNQTGR-------WISSFRAIWGWDDSCIFIGNMTR 101 (154)
Q Consensus 33 ~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~--~~~~~~-~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~d~ 101 (154)
.+...++|+| +...||.....|...+|++... ...... ......+. .-.-.++.|.++...|+.++. .
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~ 224 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-S 224 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-C
Confidence 4677999999 5569999999999999999221 111011 00000010 011125678888777777664 4
Q ss_pred eEEEecCCCccceeEEeCCCcCCcceEEEecCC
Q 038702 102 TVEVISPAQRRSVATLQSPYISAIPCRFHAHPH 134 (154)
Q Consensus 102 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (154)
.+.++|+++......+...........+.-+|.
T Consensus 225 ~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~ 257 (765)
T PF10214_consen 225 KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPD 257 (765)
T ss_pred ceEEEECCCCCccchhccCCChhheeeEEecCC
Confidence 678889887765332222222333356666664
|
These proteins are found in fungi. |
| >smart00564 PQQ beta-propeller repeat | Back alignment and domain information |
|---|
Probab=90.90 E-value=0.62 Score=19.01 Aligned_cols=24 Identities=13% Similarity=0.278 Sum_probs=19.0
Q ss_pred EEEEEccCCeEEEecCCCccceeE
Q 038702 93 CIFIGNMTRTVEVISPAQRRSVAT 116 (154)
Q Consensus 93 ~l~~~~~d~~i~i~~~~~~~~~~~ 116 (154)
.++.++.++.+..+|.++++.+-.
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEE
Confidence 577778899999999988876543
|
Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=90.74 E-value=3.1 Score=26.76 Aligned_cols=108 Identities=23% Similarity=0.265 Sum_probs=59.7
Q ss_pred CeEEEEEcCCCCEEEEee---CCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEec-CC
Q 038702 34 AVHSAYFSPSGSSLATTS---FDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVIS-PA 109 (154)
Q Consensus 34 ~v~~~~~~~~~~~l~~~~---~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~-~~ 109 (154)
.+.+.+++++++.++... ....+.++... ........ +. ......|++++........+...+++. ..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~----g~--~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~ 96 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLT----GG--SLTRPSWDPDGWVWTVDDGSGGVRVVRDSA 96 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeecc----CC--ccccccccCCCCEEEEEcCCCceEEEEecC
Confidence 688999999999877765 23345444433 22222111 11 122457899988877777666666663 33
Q ss_pred Cccce-eEEeCCCcCCcceEEEecCCCccEEEEEc---CCCeEEE
Q 038702 110 QRRSV-ATLQSPYISAIPCRFHAHPHQVGTLAGAT---GGGQVYV 150 (154)
Q Consensus 110 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~d~~i~~ 150 (154)
+++.. ..+...........+.++| ++..++.-. .++.|.+
T Consensus 97 ~g~~~~~~v~~~~~~~~I~~l~vSp-DG~RvA~v~~~~~~~~v~v 140 (253)
T PF10647_consen 97 SGTGEPVEVDWPGLRGRITALRVSP-DGTRVAVVVEDGGGGRVYV 140 (253)
T ss_pred CCcceeEEecccccCCceEEEEECC-CCcEEEEEEecCCCCeEEE
Confidence 33322 1222221111336899999 777665444 3455554
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.63 E-value=3.5 Score=27.22 Aligned_cols=116 Identities=9% Similarity=0.018 Sum_probs=64.4
Q ss_pred cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecC-CCCceEeEEEEEEcCCCcEEEEEccCCeEEEecC
Q 038702 30 SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNN-QTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISP 108 (154)
Q Consensus 30 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~ 108 (154)
+....+.++.|+|+.+.|++......-.++=...+......+-.. ...+ .+.+..++++.++--.++.+.++.+
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE-----~Ieyig~n~fvi~dER~~~l~~~~v 157 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPE-----TIEYIGGNQFVIVDERDRALYLFTV 157 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChh-----HeEEecCCEEEEEehhcceEEEEEE
Confidence 445559999999999988887777666665545555443332111 1111 2345667778887778888888766
Q ss_pred CCccceeEEe-------C-CCcCCcceEEEecCCCccEEEEEcCCCeEEEe
Q 038702 109 AQRRSVATLQ-------S-PYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 151 (154)
Q Consensus 109 ~~~~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w 151 (154)
.....+..+. . .+...-.-.++|+|.+ ..|..+-.-.=+.+|
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~ 207 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIF 207 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEE
Confidence 6442221111 1 1111122467899844 444444443333333
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=90.33 E-value=0.83 Score=19.57 Aligned_cols=30 Identities=23% Similarity=0.296 Sum_probs=18.8
Q ss_pred cccCCeEEEEEcCCCCEEEEeeC-C--CeEEEE
Q 038702 30 SHKRAVHSAYFSPSGSSLATTSF-D--DTIGIW 59 (154)
Q Consensus 30 ~~~~~v~~~~~~~~~~~l~~~~~-d--~~v~~~ 59 (154)
.....-....|+|+|+.|+..+. + |...||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34456678899999998876654 4 444444
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=90.29 E-value=0.87 Score=19.70 Aligned_cols=31 Identities=29% Similarity=0.416 Sum_probs=22.8
Q ss_pred CCCcEEEEEc-cCCeEEEecCCCccceeEEeC
Q 038702 89 WDDSCIFIGN-MTRTVEVISPAQRRSVATLQS 119 (154)
Q Consensus 89 ~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~ 119 (154)
|++++|+++. .++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 4666665554 577899999988887777764
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=90.06 E-value=5.6 Score=28.72 Aligned_cols=31 Identities=6% Similarity=0.208 Sum_probs=25.6
Q ss_pred CCcEEEEEccCCeEEEecCCCccceeEEeCC
Q 038702 90 DDSCIFIGNMTRTVEVISPAQRRSVATLQSP 120 (154)
Q Consensus 90 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 120 (154)
.+.+++.+..+|.++.+|.++++.+-..+..
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 4456777888999999999999999887643
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=89.75 E-value=3.8 Score=26.35 Aligned_cols=115 Identities=9% Similarity=0.020 Sum_probs=59.3
Q ss_pred cccCCeEEEEEcCCCC-EEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecC
Q 038702 30 SHKRAVHSAYFSPSGS-SLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISP 108 (154)
Q Consensus 30 ~~~~~v~~~~~~~~~~-~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~ 108 (154)
+-...+..++|+|+.+ ++++....+.|..++.. ++......... .+.. . .+++..++.++++.-.++.+.++++
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g-~~D~-E--gI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDG-FGDY-E--GITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS--SSE-E--EEEE-STTEEEEEETTTTEEEEEEE
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCC-CCCc-e--eEEEECCCEEEEEEcCCCcEEEEEE
Confidence 4455699999999755 66677778888888764 34333332211 1111 1 3456667778887767899998888
Q ss_pred CCcc------ceeEEe--CC--CcCCcceEEEecCCCccEEEEEcCCCeEEEe
Q 038702 109 AQRR------SVATLQ--SP--YISAIPCRFHAHPHQVGTLAGATGGGQVYVW 151 (154)
Q Consensus 109 ~~~~------~~~~~~--~~--~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w 151 (154)
.... ....+. .. ..... -.++|+|....++ .+....-..+|
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~-EGla~D~~~~~L~-v~kE~~P~~l~ 144 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGF-EGLAYDPKTNRLF-VAKERKPKRLY 144 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS---EEEEEETTTTEEE-EEEESSSEEEE
T ss_pred eccccccchhhceEEecccccCCCcce-EEEEEcCCCCEEE-EEeCCCChhhE
Confidence 4321 112222 11 11222 5789999544444 44444333343
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=89.65 E-value=5.8 Score=28.24 Aligned_cols=98 Identities=7% Similarity=-0.076 Sum_probs=47.3
Q ss_pred CCCEEEEeeCCC---eEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccc--eeEE
Q 038702 43 SGSSLATTSFDD---TIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRS--VATL 117 (154)
Q Consensus 43 ~~~~l~~~~~d~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~--~~~~ 117 (154)
+++..+.|+.++ .+..||.++..-...... ....... . +...+++..+.|+ .+.+||.++.+- +..+
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m--~~~r~~~--~-~~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m 433 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPST--YYPHYKS--C-ALVFGRRLFLVGR---NAEFYCESSNTWTLIDDP 433 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCC--CCccccc--e-EEEECCEEEEECC---ceEEecCCCCcEeEcCCC
Confidence 566667776543 466777665432211111 0110001 1 1123566666664 467788875532 2222
Q ss_pred eCCCcCCcceEEEecCCCccEEEEEcCC-----CeEEEeeC
Q 038702 118 QSPYISAIPCRFHAHPHQVGTLAGATGG-----GQVYVWTS 153 (154)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----~~i~~wd~ 153 (154)
...... ..++.. ++.+.+.|+.+ ..+..||+
T Consensus 434 ~~~r~~---~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~ 469 (480)
T PHA02790 434 IYPRDN---PELIIV--DNKLLLIGGFYRGSYIDTIEVYNN 469 (480)
T ss_pred CCCccc---cEEEEE--CCEEEEECCcCCCcccceEEEEEC
Confidence 211111 122222 46788888754 35777776
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=89.59 E-value=6.2 Score=28.52 Aligned_cols=112 Identities=8% Similarity=-0.025 Sum_probs=56.3
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCe-------EEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecC
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAV-------HSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNN 74 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~ 74 (154)
+.++.++.|.-.|..+++................ ..+.+ .+..++.++.|+.+.-.|.++++..-......
T Consensus 73 yv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~ 150 (527)
T TIGR03075 73 YVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSKKNGD 150 (527)
T ss_pred EEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeeccccc
Confidence 4456677788788877664111000000000000 01112 23567778889999999998887764332211
Q ss_pred CC-CceEeEEEEEEcCCCcEEEEEc------cCCeEEEecCCCccceeEEe
Q 038702 75 QT-GRWISSFRAIWGWDDSCIFIGN------MTRTVEVISPAQRRSVATLQ 118 (154)
Q Consensus 75 ~~-~~~~~~~~~~~~~~~~~l~~~~------~d~~i~i~~~~~~~~~~~~~ 118 (154)
.. ...+.. ..... ++ .++.+. .+|.|+-+|.++++.+-.+.
T Consensus 151 ~~~~~~~ts-sP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 151 YKAGYTITA-APLVV-KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred ccccccccC-CcEEE-CC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 10 000000 00001 33 344433 26889999999988765543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=89.55 E-value=5.4 Score=27.77 Aligned_cols=34 Identities=18% Similarity=0.093 Sum_probs=28.3
Q ss_pred CCeEEEEEcCCCCEEEEeeCCCeEEEEecccccc
Q 038702 33 RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN 66 (154)
Q Consensus 33 ~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~ 66 (154)
+++..+++||++++++.-..+|.+.+.+..-.+.
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~ 250 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEK 250 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcccce
Confidence 5799999999999999999999998887544433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=89.42 E-value=0.89 Score=24.08 Aligned_cols=42 Identities=17% Similarity=0.140 Sum_probs=24.6
Q ss_pred ecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEe
Q 038702 4 SSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATT 50 (154)
Q Consensus 4 ~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 50 (154)
+..+|.+.-||..+++ ...+..--...+.++++++++.++.+
T Consensus 33 ~~~~GRll~ydp~t~~-----~~vl~~~L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKE-----TTVLLDGLYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp T---EEEEEEETTTTE-----EEEEEEEESSEEEEEE-TTSSEEEEE
T ss_pred CCCCcCEEEEECCCCe-----EEEehhCCCccCeEEEcCCCCEEEEE
Confidence 3456677777777654 23333444566889999998866554
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=89.34 E-value=4.9 Score=27.01 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCEEEEeeCCCeEEEEe
Q 038702 34 AVHSAYFSPSGSSLATTSFDDTIGIWS 60 (154)
Q Consensus 34 ~v~~~~~~~~~~~l~~~~~d~~v~~~~ 60 (154)
..+.|+|.|+|+.|++ ...|.|.+++
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~ 28 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD 28 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe
Confidence 3578999999987765 5699999999
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.30 E-value=10 Score=30.48 Aligned_cols=138 Identities=12% Similarity=0.071 Sum_probs=67.8
Q ss_pred cCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEE-cC-------CCCEEEEeeCCCeEEEEeccccccc----eeEee
Q 038702 5 STDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYF-SP-------SGSSLATTSFDDTIGIWSGVNFENT----AMIHH 72 (154)
Q Consensus 5 ~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~-------~~~~l~~~~~d~~v~~~~~~~~~~~----~~~~~ 72 (154)
+-|+.+.+|+..++.. ....-+....|..+.. -| .=+++..-+.--.|.++-+.-.+.. .....
T Consensus 96 TiDn~L~lWny~~~~e----~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~ 171 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNE----LAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTS 171 (1311)
T ss_pred EeCCeEEEEEcCCCCc----cccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccc
Confidence 4688999999998553 3333344555555553 22 2223333333344555544332221 11111
Q ss_pred --cCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecC----CCc---c-c----------------eeEEeCCCcCCcc
Q 038702 73 --NNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISP----AQR---R-S----------------VATLQSPYISAIP 126 (154)
Q Consensus 73 --~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~----~~~---~-~----------------~~~~~~~~~~~~~ 126 (154)
-...+. .+.++....+|+.+++|- || .+|.+ ..+ + + +..+.+.+...+
T Consensus 172 ~~i~~dg~--~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI- 245 (1311)
T KOG1900|consen 172 FKISVDGV--SVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPI- 245 (1311)
T ss_pred eeeecCCc--eEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcc-
Confidence 011222 233445566787776655 44 34432 211 0 0 111111112222
Q ss_pred eEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 127 CRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 127 ~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
..+..+. ..+++.+-+..++|.+||+
T Consensus 246 ~qi~ID~-SR~IlY~lsek~~v~~Y~i 271 (1311)
T KOG1900|consen 246 RQITIDN-SRNILYVLSEKGTVSAYDI 271 (1311)
T ss_pred eeeEecc-ccceeeeeccCceEEEEEc
Confidence 4566665 4467788889999999997
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=89.22 E-value=7.8 Score=29.13 Aligned_cols=115 Identities=10% Similarity=0.013 Sum_probs=63.0
Q ss_pred eEEEEEcC--CCCEEEEeeCCCeEEEEeccccc----cc-------------eeEeecCCCCceEeEEEEEEc--CCCcE
Q 038702 35 VHSAYFSP--SGSSLATTSFDDTIGIWSGVNFE----NT-------------AMIHHNNQTGRWISSFRAIWG--WDDSC 93 (154)
Q Consensus 35 v~~~~~~~--~~~~l~~~~~d~~v~~~~~~~~~----~~-------------~~~~~~~~~~~~~~~~~~~~~--~~~~~ 93 (154)
|+.|.... +...|+.+..||.|.+|..++-. .. ....+.. . ...++.++++ ...++
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v--~~SaWGLdIh~~~~~rl 179 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-V--GASAWGLDIHDYKKSRL 179 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-c--CCceeEEEEEecCcceE
Confidence 55555544 44578889999999999764210 00 0000110 1 1134556666 67788
Q ss_pred EEEEccCCeEEEecCCCcc-ceeEEeC-CCcCCcceEEEecCCC--cc---EEEEEcCCCeEEEeeC
Q 038702 94 IFIGNMTRTVEVISPAQRR-SVATLQS-PYISAIPCRFHAHPHQ--VG---TLAGATGGGQVYVWTS 153 (154)
Q Consensus 94 l~~~~~d~~i~i~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~--~~---~l~~~~~d~~i~~wd~ 153 (154)
+|+++....|.||-..... ....... .+...+ -.++|.+.+ +. .+++++-.|.+.+|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNI-P~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNI-PNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEeccccccccccccccccCC-CeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8988888888887544211 1100001 111122 234554422 22 6778888999888875
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=89.03 E-value=6.1 Score=27.65 Aligned_cols=55 Identities=20% Similarity=0.231 Sum_probs=32.2
Q ss_pred EEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEE
Q 038702 93 CIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYV 150 (154)
Q Consensus 93 ~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~ 150 (154)
.++.++.++++.||.-.+- +-..+..+.++ ...++.-+.....|++-+.+|.+.+
T Consensus 302 ~llV~t~t~~LlVy~d~~L--~WsA~l~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v 356 (418)
T PF14727_consen 302 NLLVGTHTGTLLVYEDTTL--VWSAQLPHVPV-ALSVANFNGLKGLIVSLSDEGQLSV 356 (418)
T ss_pred EEEEEecCCeEEEEeCCeE--EEecCCCCCCE-EEEecccCCCCceEEEEcCCCcEEE
Confidence 4777888888888864322 22222222222 2344433335678888888998865
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.87 E-value=0.41 Score=36.16 Aligned_cols=120 Identities=10% Similarity=-0.042 Sum_probs=64.9
Q ss_pred cccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccc--cccc--eeEeecCCCCceE-eEEEEEEcCCCcEEEEEccCCeE
Q 038702 30 SHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVN--FENT--AMIHHNNQTGRWI-SSFRAIWGWDDSCIFIGNMTRTV 103 (154)
Q Consensus 30 ~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~--~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i 103 (154)
+..+.+-.++|.. +...+. -.-|.+.+|++.- ++.. .......+.+... .+.-+-+.++..++..+-.++.+
T Consensus 130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i 207 (1283)
T KOG1916|consen 130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEI 207 (1283)
T ss_pred cCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCce
Confidence 5567777777743 111221 2345678888754 2211 1111111122111 22223344566788888888888
Q ss_pred EEecCCCccceeEEeCCCcCCcc---------eEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 104 EVISPAQRRSVATLQSPYISAIP---------CRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 104 ~i~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
++....+... ..+.+|....+. .--..+| ||..|+....||.++.|.+
T Consensus 208 ~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSp-DGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 208 RLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSP-DGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred eEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCC-CCcEEEEeecCCccceeee
Confidence 8876653322 223334333221 1122677 8899999999999999875
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.83 E-value=6.6 Score=27.85 Aligned_cols=109 Identities=7% Similarity=0.041 Sum_probs=59.8
Q ss_pred eeecCCCcEEEE-EccCCCCCCCCCceeecc-cCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 2 ATSSTDGTACIW-DLRSMATDKPEPTKVLSH-KRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 2 ~~~~~d~~v~vw-~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
..++.||.|.-| |.+..........+.+.. ..++..+.-..+.+-|++-+.+|++..+-....+..........
T Consensus 284 Lv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~---- 359 (733)
T COG4590 284 LVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQA---- 359 (733)
T ss_pred EEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcC----
Confidence 567788888876 565544322112222222 23444443333455677778888887765443332221111111
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEE
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATL 117 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~ 117 (154)
.-.+.++|.+.++++- ..|.++++.+++..+.-++
T Consensus 360 --~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~Peisw 394 (733)
T COG4590 360 --PQLVAMSPNQAYLLSE-DQGKIRLAQLENRNPEISW 394 (733)
T ss_pred --cceeeeCcccchheee-cCCceEEEEecCCCCCccH
Confidence 1135689999988764 3568899988766554333
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=88.80 E-value=9.6 Score=29.67 Aligned_cols=78 Identities=12% Similarity=-0.096 Sum_probs=44.2
Q ss_pred ccCCeEEEEEcCC--C----CEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEE
Q 038702 31 HKRAVHSAYFSPS--G----SSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVE 104 (154)
Q Consensus 31 ~~~~v~~~~~~~~--~----~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 104 (154)
....|.|+.++|- + ++++.|..+..+.+.-..................+-..+-..+-.+..+|.++..||.+.
T Consensus 529 ~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~ 608 (1096)
T KOG1897|consen 529 FEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALL 608 (1096)
T ss_pred ecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEE
Confidence 3568999999983 2 267888777665554332222221111111111111223345566788999999999876
Q ss_pred EecC
Q 038702 105 VISP 108 (154)
Q Consensus 105 i~~~ 108 (154)
.|-+
T Consensus 609 ~fv~ 612 (1096)
T KOG1897|consen 609 YFVL 612 (1096)
T ss_pred EEEE
Confidence 6643
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.26 E-value=0.024 Score=39.18 Aligned_cols=106 Identities=10% Similarity=0.126 Sum_probs=65.4
Q ss_pred ccCCeEEEEEcCCCCEEE-EeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCC
Q 038702 31 HKRAVHSAYFSPSGSSLA-TTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPA 109 (154)
Q Consensus 31 ~~~~v~~~~~~~~~~~l~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~ 109 (154)
.++....++|..++..++ .+-..+.+.+||+.+..-...-... .+. ..+ ..|++....++.+...|.+.|++..
T Consensus 73 ~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg-~~s---~sl-l~wsKg~~el~ig~~~gn~viynhg 147 (615)
T KOG2247|consen 73 PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG-TSS---KSL-LAWSKGTPELVIGNNAGNIVIYNHG 147 (615)
T ss_pred CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC-cch---HHH-HhhccCCccccccccccceEEEecc
Confidence 345566778888776544 4556788999998764322211111 111 111 4688888889999899999999988
Q ss_pred CccceeEEeCCCcCCcceEEEecCCCccEEEEEcCC
Q 038702 110 QRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGG 145 (154)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 145 (154)
+.+.+.....|.... ...++.+. ++.+.++.|
T Consensus 148 tsR~iiv~Gkh~RRg--tq~av~lE--d~vil~dcd 179 (615)
T KOG2247|consen 148 TSRRIIVMGKHQRRG--TQIAVTLE--DYVILCDCD 179 (615)
T ss_pred chhhhhhhcccccce--eEEEeccc--ceeeecCcH
Confidence 776554443243333 46777772 345555444
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=88.25 E-value=8.3 Score=28.24 Aligned_cols=104 Identities=13% Similarity=0.111 Sum_probs=57.3
Q ss_pred ecCCCcEEEEEccCCCC--CCCCCceeecc--cCC--eEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCC
Q 038702 4 SSTDGTACIWDLRSMAT--DKPEPTKVLSH--KRA--VHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTG 77 (154)
Q Consensus 4 ~~~d~~v~vw~~~~~~~--~~~~~~~~~~~--~~~--v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~ 77 (154)
--....|.||.+..... .+....+.... .-+ -..+-|+|....|+.-.....-.+++++.........-. ..+
T Consensus 78 VQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G 156 (671)
T PF15390_consen 78 VQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK-TSG 156 (671)
T ss_pred EeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc-CCc
Confidence 34456788999863221 11111111122 112 235679998888877766655556676655444333221 112
Q ss_pred ceEeEEEEEEcCCCcEEEEEc-cCCeEEEecCCCc
Q 038702 78 RWISSFRAIWGWDDSCIFIGN-MTRTVEVISPAQR 111 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~-~d~~i~i~~~~~~ 111 (154)
.+.+.+|..||+.|+.+- ..=.-++||-.+.
T Consensus 157 ---~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 157 ---LIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred ---eEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 345778999998776654 2334678886543
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=87.38 E-value=9 Score=27.68 Aligned_cols=32 Identities=9% Similarity=0.121 Sum_probs=22.5
Q ss_pred EcCCCcEEEEEccCCeEEEecCCCccceeEEe
Q 038702 87 WGWDDSCIFIGNMTRTVEVISPAQRRSVATLQ 118 (154)
Q Consensus 87 ~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 118 (154)
......|++.++..|-||+||.-.-.....++
T Consensus 569 ~tTesGyIa~as~kGDirLyDRig~rAKtalP 600 (776)
T COG5167 569 MTTESGYIAAASRKGDIRLYDRIGKRAKTALP 600 (776)
T ss_pred ccccCceEEEecCCCceeeehhhcchhhhcCc
Confidence 34456799999999999999965443333333
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=87.32 E-value=8.9 Score=27.60 Aligned_cols=65 Identities=14% Similarity=0.152 Sum_probs=32.7
Q ss_pred CCCEEEEeeCC-----CeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccC------CeEEEecCCCc
Q 038702 43 SGSSLATTSFD-----DTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMT------RTVEVISPAQR 111 (154)
Q Consensus 43 ~~~~l~~~~~d-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------~~i~i~~~~~~ 111 (154)
++..++.|+.+ ..+..||..+.+-...... +.+.. ...++ ..++...+.|+.+ +.+..||+.+.
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l--p~~r~--~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~ 416 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPL--IFPRY--NPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTN 416 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCc--CcCCc--cceEE-EECCEEEEECCcCCCCcccceEEEEeCCCC
Confidence 56677777765 3466777765432211111 11110 01111 2356777777632 35788888754
Q ss_pred c
Q 038702 112 R 112 (154)
Q Consensus 112 ~ 112 (154)
+
T Consensus 417 ~ 417 (534)
T PHA03098 417 K 417 (534)
T ss_pred e
Confidence 3
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=86.92 E-value=7.2 Score=26.07 Aligned_cols=151 Identities=17% Similarity=0.148 Sum_probs=76.8
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeec--ccCCeE-EEEEcC--CCCEEEEee-CCCeEEEEecccccccee--Eeec
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLS--HKRAVH-SAYFSP--SGSSLATTS-FDDTIGIWSGVNFENTAM--IHHN 73 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~--~~~~v~-~~~~~~--~~~~l~~~~-~d~~v~~~~~~~~~~~~~--~~~~ 73 (154)
+.+++||+|.=|...-............. ..+.|+ .+++.. .+.+|+.+. ..++|-++|-.-...... +...
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 56889999999996433220000111121 123443 455543 356666654 578899998654332110 0000
Q ss_pred ---------C--CCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCC-----Ccc
Q 038702 74 ---------N--QTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPH-----QVG 137 (154)
Q Consensus 74 ---------~--~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 137 (154)
+ ..+..+.+.-..-.++.+.=+.+.--|.|-+||+. ++.++.+.....-..++.++..|. .+.
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~ 262 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGA 262 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence 0 00011111111122333333344455789999874 666666653332233355555442 345
Q ss_pred EEEEEcCCCeEEEeeC
Q 038702 138 TLAGATGGGQVYVWTS 153 (154)
Q Consensus 138 ~l~~~~~d~~i~~wd~ 153 (154)
+|+---.||+|..+|.
T Consensus 263 lLVGNFGDG~InaFD~ 278 (336)
T TIGR03118 263 LLVGNFGDGTINAYDP 278 (336)
T ss_pred eEEeecCCceeEEecC
Confidence 6665568999999996
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=86.03 E-value=11 Score=27.30 Aligned_cols=60 Identities=8% Similarity=0.007 Sum_probs=35.0
Q ss_pred CCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCC
Q 038702 44 GSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPA 109 (154)
Q Consensus 44 ~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~ 109 (154)
.-+++.++..|-|++||--.......++... ..+. .+..+.+|.++++.+. ..+.+-|++
T Consensus 573 sGyIa~as~kGDirLyDRig~rAKtalP~lG---~aIk--~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 573 SGYIAAASRKGDIRLYDRIGKRAKTALPGLG---DAIK--HIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred CceEEEecCCCceeeehhhcchhhhcCcccc---ccee--eeEeecCCcEEEEeec-ceEEEEecc
Confidence 4489999999999999965443333332221 1222 2344567877766553 355555554
|
|
| >PF14779 BBS1: Ciliary BBSome complex subunit 1 | Back alignment and domain information |
|---|
Probab=85.42 E-value=7.8 Score=25.12 Aligned_cols=59 Identities=17% Similarity=0.279 Sum_probs=39.5
Q ss_pred cEEEEEccCCeEEEecCCCccceeEEeCCCcCCcc-eEEEecCCCccEEEEEcCCCeEEEe
Q 038702 92 SCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIP-CRFHAHPHQVGTLAGATGGGQVYVW 151 (154)
Q Consensus 92 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~~w 151 (154)
..|+.|.++|.|.|.|......+..+.-....+.. ..=.+.- -...++.++.||.|++.
T Consensus 196 scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~de-vdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 196 SCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDE-VDYRIVVACRDGKIYTI 255 (257)
T ss_pred ceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeec-cceEEEEEeCCCEEEEE
Confidence 58999999999999999988777777644332221 1111221 13467778899998864
|
|
| >PF01011 PQQ: PQQ enzyme repeat family | Back alignment and domain information |
|---|
Probab=85.29 E-value=2.1 Score=18.34 Aligned_cols=26 Identities=8% Similarity=0.267 Sum_probs=21.5
Q ss_pred EEEEccCCeEEEecCCCccceeEEeC
Q 038702 94 IFIGNMTRTVEVISPAQRRSVATLQS 119 (154)
Q Consensus 94 l~~~~~d~~i~i~~~~~~~~~~~~~~ 119 (154)
++.++.+|.+.-.|.++|+.+-.++.
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 45568999999999999998877763
|
; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A .... |
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=85.19 E-value=8.5 Score=25.35 Aligned_cols=100 Identities=8% Similarity=0.018 Sum_probs=53.7
Q ss_pred CcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCCCEEEEee------CCCeEEEEeccccccceeEeec-CCCCce
Q 038702 8 GTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATTS------FDDTIGIWSGVNFENTAMIHHN-NQTGRW 79 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~------~d~~v~~~~~~~~~~~~~~~~~-~~~~~~ 79 (154)
..|.+||....+ -...- +-.+.|+++.|..+.+.+++|. ....+..||..+..-....... ...+..
T Consensus 16 ~~lC~yd~~~~q-----W~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgp 90 (281)
T PF12768_consen 16 PGLCLYDTDNSQ-----WSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGP 90 (281)
T ss_pred CEEEEEECCCCE-----eecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCc
Confidence 458999987643 12221 4567899999987777777664 3456888888766433222211 112223
Q ss_pred EeEEEEEEcCCCcEEEEEc-c--CCeEEEecCCCcc
Q 038702 80 ISSFRAIWGWDDSCIFIGN-M--TRTVEVISPAQRR 112 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~-~--d~~i~i~~~~~~~ 112 (154)
+..+...-....++.+.|. . +..|..||-.+..
T Consensus 91 v~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~ 126 (281)
T PF12768_consen 91 VTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWS 126 (281)
T ss_pred EEEEEeeccCCceEEEeceecCCCceEEEEcCCceE
Confidence 3433332222233444443 2 2357777755443
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=84.87 E-value=18 Score=28.67 Aligned_cols=31 Identities=6% Similarity=0.088 Sum_probs=20.3
Q ss_pred EcCCCcEEEEEccCCeEEEecCCCccceeEEe
Q 038702 87 WGWDDSCIFIGNMTRTVEVISPAQRRSVATLQ 118 (154)
Q Consensus 87 ~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 118 (154)
..|-..++++| ....+++||+...++++...
T Consensus 941 i~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e 971 (1205)
T KOG1898|consen 941 ICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCE 971 (1205)
T ss_pred EeccCCEEEEe-cccEEEEeeCChHHHHhhhh
Confidence 34544555543 46789999998777665544
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=84.55 E-value=4.5 Score=25.37 Aligned_cols=44 Identities=18% Similarity=0.181 Sum_probs=32.5
Q ss_pred cCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEee
Q 038702 5 STDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTS 51 (154)
Q Consensus 5 ~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 51 (154)
...+.|.+|++..... .....+.--+.|..+.++..|+++++-=
T Consensus 35 ~~g~~Vev~~l~~~~~---~~~~~F~Tv~~V~~l~y~~~GDYlvTlE 78 (215)
T PF14761_consen 35 ASGCKVEVYDLEQEEC---PLLCTFSTVGRVLQLVYSEAGDYLVTLE 78 (215)
T ss_pred cCCCEEEEEEcccCCC---ceeEEEcchhheeEEEeccccceEEEEE
Confidence 4556799999984332 1344445668999999999999999853
|
|
| >PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
Probab=84.48 E-value=1.9 Score=17.11 Aligned_cols=25 Identities=12% Similarity=0.250 Sum_probs=16.7
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEE
Q 038702 35 VHSAYFSPSGSSLATTSFDDTIGIW 59 (154)
Q Consensus 35 v~~~~~~~~~~~l~~~~~d~~v~~~ 59 (154)
...++++++|+.+++=+....|.++
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4567777777777776666666553
|
For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A. |
| >PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A | Back alignment and domain information |
|---|
Probab=84.43 E-value=2.4 Score=18.30 Aligned_cols=21 Identities=10% Similarity=0.281 Sum_probs=15.6
Q ss_pred CCcEEEEEccCCeEEEecCCC
Q 038702 90 DDSCIFIGNMTRTVEVISPAQ 110 (154)
Q Consensus 90 ~~~~l~~~~~d~~i~i~~~~~ 110 (154)
.+..++.++.||.++.+|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 456788888999999988753
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=84.18 E-value=5.4 Score=30.25 Aligned_cols=38 Identities=13% Similarity=0.173 Sum_probs=30.9
Q ss_pred cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccc
Q 038702 30 SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT 67 (154)
Q Consensus 30 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~ 67 (154)
.....++++.-+|.++.++.+..||++++++.......
T Consensus 12 k~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qs 49 (1636)
T KOG3616|consen 12 KEDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQS 49 (1636)
T ss_pred cccceeeeeeecCCCceEEEEecCCcEEEEeecccchh
Confidence 34456788888999999999999999999998655443
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=83.96 E-value=6.2 Score=22.77 Aligned_cols=109 Identities=9% Similarity=0.056 Sum_probs=60.1
Q ss_pred CeeecCCCcEEEEEccCCCCC---CCCCceeecccCCeEEEEEcC-----CCCEEEEeeCCCeEEEEeccccccceeEee
Q 038702 1 MATSSTDGTACIWDLRSMATD---KPEPTKVLSHKRAVHSAYFSP-----SGSSLATTSFDDTIGIWSGVNFENTAMIHH 72 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~ 72 (154)
|+.+..-|+|.|++....... ......+..-...|++|+--+ ....|+.|+.. .+..||+...........
T Consensus 13 L~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t-~llaYDV~~N~d~Fyke~ 91 (136)
T PF14781_consen 13 LACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVENNSDLFYKEV 91 (136)
T ss_pred EEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEcccCchhhhhhC
Confidence 456777889999987654321 112445556677788876544 34567776554 588999988766543332
Q ss_pred cCCCCceEeEEEEEEcCC-CcEEEEEccCCeEEEecCCCccce
Q 038702 73 NNQTGRWISSFRAIWGWD-DSCIFIGNMTRTVEVISPAQRRSV 114 (154)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~ 114 (154)
.. +.....+ -.+... ..+++.| -+..|.-||..-.+..
T Consensus 92 ~D--Gvn~i~~-g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 92 PD--GVNAIVI-GKLGDIPSPLVIVG-GNCSIQGFDYEGNEIF 130 (136)
T ss_pred cc--ceeEEEE-EecCCCCCcEEEEC-ceEEEEEeCCCCcEEE
Confidence 22 2111111 123332 3344444 3556777766544433
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=83.23 E-value=9.1 Score=24.09 Aligned_cols=58 Identities=7% Similarity=0.066 Sum_probs=34.3
Q ss_pred CEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccC---C---eEEEe
Q 038702 45 SSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMT---R---TVEVI 106 (154)
Q Consensus 45 ~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---~---~i~i~ 106 (154)
..|..+...+.|.+|++............ ..+ .+..+.++..|+|++|-=.+ . .+|+|
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~---~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVG---RVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc-chh---heeEEEeccccceEEEEEeecCCccceEEEEE
Confidence 34433366778999999844433322221 111 34467888899999885322 2 56765
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.81 E-value=12 Score=25.06 Aligned_cols=112 Identities=8% Similarity=0.036 Sum_probs=67.7
Q ss_pred cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCC
Q 038702 30 SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPA 109 (154)
Q Consensus 30 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~ 109 (154)
.-.+.+..++++ +++...+..+.-+++.|+.++..+......+..+ +.-.|.-.|++...+..|.-+-+.|+.
T Consensus 84 ~~~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~g-----yaygv~vsGn~aYVadlddgfLivdvs 156 (370)
T COG5276 84 NARDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDG-----YAYGVYVSGNYAYVADLDDGFLIVDVS 156 (370)
T ss_pred ehhhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCc-----eEEEEEecCCEEEEeeccCcEEEEECC
Confidence 344556666664 5666677777779999999998888776555322 233456679999888877777778877
Q ss_pred Cccc---eeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 110 QRRS---VATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 110 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+.+. ....... ... ...++.+ +++-..+..|+-+.+-|+
T Consensus 157 dpssP~lagrya~~-~~d-~~~v~IS---Gn~AYvA~~d~GL~ivDV 198 (370)
T COG5276 157 DPSSPQLAGRYALP-GGD-THDVAIS---GNYAYVAWRDGGLTIVDV 198 (370)
T ss_pred CCCCceeeeeeccC-CCC-ceeEEEe---cCeEEEEEeCCCeEEEEc
Confidence 5432 2222211 111 1344443 344444556666666664
|
|
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=82.66 E-value=14 Score=25.80 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=21.0
Q ss_pred eEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 127 CRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 127 ~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
..+...+ ..+.+.+...+|.|.+|++.
T Consensus 193 ~~v~~d~-~r~~ly~l~~~~~Iq~w~l~ 219 (422)
T PF08801_consen 193 VQVAVDP-SRRLLYTLTSDGSIQVWDLG 219 (422)
T ss_dssp EEEEEET-TTTEEEEEESSE-EEEEEE-
T ss_pred eeEEecC-CcCEEEEEeCCCcEEEEEEe
Confidence 5677777 44889999999999999973
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=82.43 E-value=8.4 Score=23.15 Aligned_cols=29 Identities=17% Similarity=0.102 Sum_probs=21.9
Q ss_pred cceEEEecCC-----CccEEEEEcCCCeEEEeeC
Q 038702 125 IPCRFHAHPH-----QVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 125 ~~~~~~~~~~-----~~~~l~~~~~d~~i~~wd~ 153 (154)
....++|+|. ...+|++.+.++.|.+|..
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~ 120 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGP 120 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEec
Confidence 3467899983 2347888999999999863
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=82.11 E-value=11 Score=24.32 Aligned_cols=119 Identities=8% Similarity=0.015 Sum_probs=65.0
Q ss_pred CCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccc---ee---E--eecCCCCceEeEEEEEEcCCCcEEEEEccCCeEE
Q 038702 33 RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT---AM---I--HHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVE 104 (154)
Q Consensus 33 ~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~---~~---~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 104 (154)
+-.-.|++..++.++++.-.++.+.+.++...... .. + ..........- .++|++.++.|+.+-.....+
T Consensus 65 ~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~E--Gla~D~~~~~L~v~kE~~P~~ 142 (248)
T PF06977_consen 65 GDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFE--GLAYDPKTNRLFVAKERKPKR 142 (248)
T ss_dssp SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--E--EEEEETTTTEEEEEEESSSEE
T ss_pred CCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceE--EEEEcCCCCEEEEEeCCCChh
Confidence 45678888777777776666899999888443211 11 1 11111111122 468999888777777776677
Q ss_pred EecCCC---ccceeEEeC------CCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 105 VISPAQ---RRSVATLQS------PYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 105 i~~~~~---~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+|.+.. ...+..... .....-...++++|..+.+++.+.....|..+|.
T Consensus 143 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~ 200 (248)
T PF06977_consen 143 LYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR 200 (248)
T ss_dssp EEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T
T ss_pred hEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECC
Confidence 776653 222211110 0011113578899988888888888888888775
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=80.76 E-value=17 Score=25.46 Aligned_cols=51 Identities=8% Similarity=0.001 Sum_probs=34.8
Q ss_pred EEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecC
Q 038702 82 SFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHP 133 (154)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (154)
...++.||++++++.-..+|.+.+....-.+.+..+.... ...+..+.|+.
T Consensus 219 i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~-~~~p~~~~WCG 269 (410)
T PF04841_consen 219 IIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDS-KSPPKQMAWCG 269 (410)
T ss_pred eEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCc-CCCCcEEEEEC
Confidence 3467889999999999999999888765445555554331 22234667765
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=80.49 E-value=14 Score=24.55 Aligned_cols=69 Identities=10% Similarity=-0.017 Sum_probs=45.7
Q ss_pred EEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 83 FRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 83 ~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
..+.|+|+.+.|++......-.++=..+|+.+.++........ -.+.+.. ++++.++--.++.+.++-+
T Consensus 89 S~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~Dp-E~Ieyig-~n~fvi~dER~~~l~~~~v 157 (316)
T COG3204 89 SSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDP-ETIEYIG-GNQFVIVDERDRALYLFTV 157 (316)
T ss_pred cceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCCh-hHeEEec-CCEEEEEehhcceEEEEEE
Confidence 3568999999999888888777777778888888764322111 2345554 4555555556777666543
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.21 E-value=19 Score=25.77 Aligned_cols=94 Identities=9% Similarity=-0.030 Sum_probs=50.5
Q ss_pred EEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeE
Q 038702 37 SAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVAT 116 (154)
Q Consensus 37 ~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~ 116 (154)
.+=|.. .+..+.+...|-+.-|-................... ..++.|++|.+.++.--.+..|.+++....+....
T Consensus 27 gvFfDD-aNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~--I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~ 103 (657)
T KOG2377|consen 27 GVFFDD-ANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGE--IKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE 103 (657)
T ss_pred ceeecc-CcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCc--eeEEEeccCcceEEEEecCceEEEEecCCCchhhH
Confidence 344443 333333344455666666554433322221112222 34678999999999999999999998753332222
Q ss_pred E--eCCCcCCcceEEEecC
Q 038702 117 L--QSPYISAIPCRFHAHP 133 (154)
Q Consensus 117 ~--~~~~~~~~~~~~~~~~ 133 (154)
. +..........+.|..
T Consensus 104 ~~~~ck~k~~~IlGF~W~~ 122 (657)
T KOG2377|consen 104 YTQECKTKNANILGFCWTS 122 (657)
T ss_pred HHHHhccCcceeEEEEEec
Confidence 1 1111222235677775
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 154 | ||||
| 4a08_B | 382 | Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Dup | 1e-06 | ||
| 3ei1_B | 383 | Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4 Pho | 2e-06 | ||
| 3ei4_B | 436 | Structure Of The Hsddb1-Hsddb2 Complex Length = 436 | 2e-06 | ||
| 4e5z_B | 436 | Damaged Dna Induced Uv-Damaged Dna-Binding Protein | 3e-06 | ||
| 4e54_B | 435 | Damaged Dna Induced Uv-Damaged Dna-Binding Protein | 3e-06 |
| >pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex ( Purine At D-1 Position) At 3.0 A Resolution (Cpd 1) Length = 382 | Back alignment and structure |
|
| >pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4 Photoproduct Containing Dna-Duplex Length = 383 | Back alignment and structure |
|
| >pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex Length = 436 | Back alignment and structure |
|
| >pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 436 | Back alignment and structure |
|
| >pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 435 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 154 | |||
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.98 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.98 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.98 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.97 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.97 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.97 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.97 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.97 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.97 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.97 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.97 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.97 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.97 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.97 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.97 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.97 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.97 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.97 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.97 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.96 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.96 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.96 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.96 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.96 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.96 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.96 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.96 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.96 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.96 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.96 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.96 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.96 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.96 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.96 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.96 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.96 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.96 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.96 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.96 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.95 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.95 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.95 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.95 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.95 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.95 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.95 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.95 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.95 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.95 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.95 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.95 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.95 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.95 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.95 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.95 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.95 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.95 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.94 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.94 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.94 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.94 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.94 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.94 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.94 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.94 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.94 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.94 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.94 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.94 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.94 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.94 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.94 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.94 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.94 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.94 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.94 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.94 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.94 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.94 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.94 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.94 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.94 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.94 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.94 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.93 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.93 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.93 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.93 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.93 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.93 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.93 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.93 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.93 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.93 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.93 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.93 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.93 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.93 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.92 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.92 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.92 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.92 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.92 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.92 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.92 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.92 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.92 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.91 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.91 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.91 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.91 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.91 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.91 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.91 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.9 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.9 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.9 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.9 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.9 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.89 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.89 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.89 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.89 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.88 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.87 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.85 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.85 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.84 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.82 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.8 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.76 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.74 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.74 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.74 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.74 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.73 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.72 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.71 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.7 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.69 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.69 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.68 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.68 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.68 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.67 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.66 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.66 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.66 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.65 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.65 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.64 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.64 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.64 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.63 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.62 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.6 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.59 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.57 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.55 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.54 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.53 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.52 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.5 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.5 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.47 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.44 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.43 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.43 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.42 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.41 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.39 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.38 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.36 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.34 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.32 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.31 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.31 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.31 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.3 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.29 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.29 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.28 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.28 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.27 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.27 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.26 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.25 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.21 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.2 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.16 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.16 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.14 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.08 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.04 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.04 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.04 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.03 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.03 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.0 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 98.98 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 98.97 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.96 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.95 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 98.95 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.93 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 98.93 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.87 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.84 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.83 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.82 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.82 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.82 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.8 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.8 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.8 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.79 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.78 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.72 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.71 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.66 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.62 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.62 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.6 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.59 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.58 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.54 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.5 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.49 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.48 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.46 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.45 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.44 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.42 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.37 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.37 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.35 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.32 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.29 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.27 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.27 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.26 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.26 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.25 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.19 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.17 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.13 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.08 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.03 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.98 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 97.96 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 97.94 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 97.93 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.85 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 97.79 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.77 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 97.75 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 97.72 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 97.62 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.6 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.56 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.52 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.51 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 97.49 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.47 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.47 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.29 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.29 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.27 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.26 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.19 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.04 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 96.98 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 96.96 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.94 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 96.84 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 96.82 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 96.81 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 96.79 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 96.78 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.77 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.69 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 96.65 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 96.56 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 96.54 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 96.49 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 96.47 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 96.45 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 96.45 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.32 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 96.27 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 96.25 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 95.81 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 95.8 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 95.74 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 95.29 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 95.06 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 94.87 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 94.81 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 94.55 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 94.5 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 94.47 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 94.45 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 94.12 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 93.94 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 93.22 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 93.03 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 92.96 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 92.76 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 92.68 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 92.64 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 92.26 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 92.25 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 92.15 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 91.73 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 91.68 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 91.61 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 91.59 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 91.57 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 91.49 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 91.04 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.86 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 90.57 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 90.42 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 90.4 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 90.1 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 89.96 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 89.88 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 89.5 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 89.01 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 88.96 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 88.52 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 87.81 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 87.62 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 87.55 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 86.07 | |
| 3f7f_A | 729 | Nucleoporin NUP120; nuclear pore complex, macromol | 85.15 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 85.01 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 84.56 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 84.34 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 83.01 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 82.67 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 82.23 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 81.93 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 80.97 |
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-31 Score=172.75 Aligned_cols=149 Identities=13% Similarity=0.123 Sum_probs=117.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|++|+.||+|++||+.+++..........+|.+.|++++|+|++++|++++.|++|++||+++++....+. .+..
T Consensus 96 l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~---~h~~-- 170 (344)
T 4gqb_B 96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYR---AHAA-- 170 (344)
T ss_dssp EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC---CCSS--
T ss_pred EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEc---CcCC--
Confidence 57899999999999988764211112233899999999999999999999999999999999887665443 1222
Q ss_pred eEEEEEEcCCCc-EEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 81 SSFRAIWGWDDS-CIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 81 ~~~~~~~~~~~~-~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.+..++|+|++. ++++++.|+.|++||+++++....+..+.......+++|+|.++.+|++|+.||+|++||+.
T Consensus 171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~ 245 (344)
T 4gqb_B 171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK 245 (344)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESC
T ss_pred ceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECC
Confidence 234678999875 78999999999999999999888876544444447899999778899999999999999973
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=5.4e-31 Score=169.18 Aligned_cols=141 Identities=16% Similarity=0.192 Sum_probs=119.8
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|++|+.|+.|++||+++++. ...+.+|..+|.+++|+|++++|++++.|+.|++||+++.+....+. .+..
T Consensus 179 lasg~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~h~~-- 249 (321)
T 3ow8_A 179 LASGAIDGIINIFDIATGKL----LHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS---GHAS-- 249 (321)
T ss_dssp EEEEETTSCEEEEETTTTEE----EEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEEC---CCSS--
T ss_pred EEEEcCCCeEEEEECCCCcE----EEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEc---CCCC--
Confidence 57899999999999987763 34445899999999999999999999999999999998876554432 1222
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.+..++|+|++.+|++++.|+.|++||+++++++.++.+|...+ ..++|+| ++.+|++++.|+.|++||+
T Consensus 250 ~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v--~~v~~s~-~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 250 WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQV--WGVKYNG-NGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE--EEEEECT-TSSEEEEEETTCCEEEEEC
T ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcE--EEEEECC-CCCEEEEEeCCCeEEEEeC
Confidence 24467899999999999999999999999999999998776554 5789999 8899999999999999996
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.98 E-value=9.4e-31 Score=169.17 Aligned_cols=142 Identities=15% Similarity=0.194 Sum_probs=120.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|++|+.|+.|++||++++.. ...+.+|...|.+++|+|++++|++++.|++|++||+++.+....+.+.... .
T Consensus 199 l~sg~~d~~v~~wd~~~~~~----~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~-~-- 271 (340)
T 1got_B 199 FVSGACDASAKLWDVREGMC----RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNII-C-- 271 (340)
T ss_dssp EEEEETTSCEEEEETTTCSE----EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCC-S--
T ss_pred EEEEeCCCcEEEEECCCCee----EEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcc-c--
Confidence 47899999999999987663 3444589999999999999999999999999999999987665544433211 1
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
....++|+|++++|++|+.|+.|++||+.+++.+..+.+|...+ .+++|+| ++.+|++|+.|++|++||
T Consensus 272 ~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v--~~~~~s~-dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 272 GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV--SCLGVTD-DGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCE--EEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred ceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcE--EEEEEcC-CCCEEEEEcCCccEEecC
Confidence 23467899999999999999999999999999999998876554 5789999 889999999999999997
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.5e-30 Score=168.56 Aligned_cols=145 Identities=19% Similarity=0.217 Sum_probs=115.5
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCC-EEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGS-SLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
|++|+.|++|++||+++++. ...+.+|.+.|.+++|+|++. .|++++.|++|++||+++.+....+.... .+.
T Consensus 142 l~sgs~d~~i~iwd~~~~~~----~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~~~- 215 (344)
T 4gqb_B 142 AVSGSKDICIKVWDLAQQVV----LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSA-PGY- 215 (344)
T ss_dssp EEEEETTSCEEEEETTTTEE----EEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-----CC-
T ss_pred EEEEeCCCeEEEEECCCCcE----EEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecce-eec-
Confidence 57899999999999988763 444558999999999999874 78999999999999999887665443221 111
Q ss_pred EeEEEEEEcCC-CcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 80 ISSFRAIWGWD-DSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 80 ~~~~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
....++|+|+ ++++++|+.|+.|++||+++++++.++.+|...+ .+++|+|....+|++|+.|++|++||++
T Consensus 216 -~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v--~~v~fsp~g~~~lasgs~D~~i~vwd~~ 288 (344)
T 4gqb_B 216 -LPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCV--TGLVFSPHSVPFLASLSEDCSLAVLDSS 288 (344)
T ss_dssp -CEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCE--EEEEECSSSSCCEEEEETTSCEEEECTT
T ss_pred -cceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCE--EEEEEccCCCeEEEEEeCCCeEEEEECC
Confidence 2346789985 5688999999999999999999999999876655 5789999444689999999999999974
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-30 Score=164.33 Aligned_cols=142 Identities=13% Similarity=0.085 Sum_probs=117.4
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|++|+.||+|++||+.++.. ...+..|..+|.+++|+|++++|++++.|++|++||+.+++....+.. +..
T Consensus 28 l~s~~~dg~v~lWd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~---h~~-- 98 (304)
T 2ynn_A 28 VLTTLYSGRVELWNYETQVE----VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA---HPD-- 98 (304)
T ss_dssp EEEEETTSEEEEEETTTTEE----EEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEEC---CSS--
T ss_pred EEEEcCCCcEEEEECCCCce----eEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeC---CCC--
Confidence 57899999999999987653 445558999999999999999999999999999999998876654432 222
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCcc-ceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRR-SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.+..++|+|++++|++++.|++|++||++++. ....+.+|...+ .+++|+|.++.+|++|+.|++|++||+
T Consensus 99 ~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v--~~v~~~p~~~~~l~sgs~D~~v~iwd~ 170 (304)
T 2ynn_A 99 YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFV--MCVAFNPKDPSTFASGCLDRTVKVWSL 170 (304)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCE--EEEEECTTCTTEEEEEETTSEEEEEET
T ss_pred cEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcE--EEEEECCCCCCEEEEEeCCCeEEEEEC
Confidence 23467899999999999999999999999874 445566655444 578999977789999999999999997
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-30 Score=168.73 Aligned_cols=148 Identities=16% Similarity=0.186 Sum_probs=117.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCC--CCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQ--TGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~--~~~ 78 (154)
|++|+.|++|++||++.... ....+.+|.+.|.+++|+|++++|++++.|++|++||++++.....+..... ...
T Consensus 221 l~sgs~D~~v~~wd~~~~~~---~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~ 297 (380)
T 3iz6_a 221 FISGSCDTTVRLWDLRITSR---AVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNE 297 (380)
T ss_dssp EEEEETTSCEEEEETTTTCC---CCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCS
T ss_pred EEEEECCCeEEEEECCCCCc---ceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccc
Confidence 57899999999999975432 1334458999999999999999999999999999999998876655432111 111
Q ss_pred eEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEE----eCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 79 WISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATL----QSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
...+..++|+|+++++++|+.||.|++||+..++.+..+ .+|...+ .+++|+| ++.+|++|+.|++|++|+++
T Consensus 298 ~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v--~~l~~s~-dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 298 LPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRI--SCLGLSS-DGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp SCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCC--CEEEECS-SSSEEEEECTTSCEEEEECC
T ss_pred cCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCce--EEEEECC-CCCEEEEeeCCCCEEEEecC
Confidence 111236789999999999999999999999998887776 3344333 5789999 88999999999999999974
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-30 Score=166.94 Aligned_cols=142 Identities=18% Similarity=0.262 Sum_probs=119.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|++|+.|+.|++||+++++. ...+.+|...|.+++|+|+++.|++++.|++|++||++.......+..... ..
T Consensus 213 l~sgs~Dg~v~~wd~~~~~~----~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~---~~ 285 (354)
T 2pbi_B 213 FVSGGCDKKAMVWDMRSGQC----VQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESI---IF 285 (354)
T ss_dssp EEEEETTSCEEEEETTTCCE----EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTC---CS
T ss_pred EEEEeCCCeEEEEECCCCcE----EEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCc---cc
Confidence 57899999999999988763 344458999999999999999999999999999999988765544432211 11
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
....++|+|++.+|++++.|+.|++||+.+++.+..+.+|...+ .+++|+| ++.+|++|+.|++|++|+
T Consensus 286 ~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v--~~l~~sp-dg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 286 GASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRV--STLRVSP-DGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCE--EEEEECT-TSSCEEEEETTSEEEEEC
T ss_pred ceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcE--EEEEECC-CCCEEEEEcCCCCEEecC
Confidence 23467899999999999999999999999999998888776554 5789999 889999999999999996
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=162.01 Aligned_cols=143 Identities=18% Similarity=0.274 Sum_probs=116.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCce-eecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTK-VLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (154)
|++|+.|++|++||++.+.. ... +.+|...|.+++|+| ++..|++++.|++|++||++............ ..
T Consensus 112 l~sgs~D~~v~lWd~~~~~~----~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~--~~ 185 (304)
T 2ynn_A 112 VLSGSDDLTVKLWNWENNWA----LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ--ER 185 (304)
T ss_dssp EEEEETTSCEEEEEGGGTTE----EEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCC--TT
T ss_pred EEEECCCCeEEEEECCCCcc----hhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCC--cC
Confidence 57999999999999987642 333 348999999999999 67899999999999999998776554443221 12
Q ss_pred eEeEEEEEEcC--CCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 79 WISSFRAIWGW--DDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 79 ~~~~~~~~~~~--~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.+. .+.|.| ++.+|++++.|+.|++||+++++++.++.+|...+ ..++|+| ++.+|++|+.||+|++||++
T Consensus 186 ~v~--~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v--~~~~~~p-~~~~l~s~s~Dg~i~iWd~~ 258 (304)
T 2ynn_A 186 GVN--YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV--SFAVFHP-TLPIIISGSEDGTLKIWNSS 258 (304)
T ss_dssp CEE--EEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCE--EEEEECS-SSSEEEEEETTSCEEEEETT
T ss_pred cEE--EEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCE--EEEEECC-CCCEEEEEcCCCeEEEEECC
Confidence 233 335554 77899999999999999999999999999876554 5788999 77899999999999999973
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-30 Score=168.37 Aligned_cols=141 Identities=21% Similarity=0.249 Sum_probs=120.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|++|+.|++|++||+.+++. ...+.+|.+.|.+++|+|++++|++|+.|++|++||+.+.+....+. .+..
T Consensus 123 l~s~s~Dg~i~vwd~~~~~~----~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~---~h~~-- 193 (410)
T 1vyh_C 123 MVSASEDATIKVWDYETGDF----ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH---GHDH-- 193 (410)
T ss_dssp EEEEESSSCEEEEETTTCCC----CEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCC---CCSS--
T ss_pred EEEEeCCCeEEEEECCCCcE----EEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEc---CCCC--
Confidence 57899999999999988764 44555899999999999999999999999999999998776543332 1222
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.+..++|+|++.++++++.|+.|++||+++++++..+.+|...+ ..+.++| ++.+|++|+.|+.|++||+
T Consensus 194 ~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v--~~~~~~~-~g~~l~s~s~D~~v~vwd~ 263 (410)
T 1vyh_C 194 NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWV--RMVRPNQ-DGTLIASCSNDQTVRVWVV 263 (410)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCE--EEEEECT-TSSEEEEEETTSCEEEEET
T ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccE--EEEEECC-CCCEEEEEcCCCeEEEEEC
Confidence 24467899999999999999999999999999999998776554 5678998 8899999999999999997
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=163.39 Aligned_cols=143 Identities=15% Similarity=0.145 Sum_probs=117.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
+++++.|++|++||+++++. ...+.+|.+.|.+++|+|+++++++++.|+.|++||+++......+.. +..
T Consensus 157 l~s~s~d~~i~~wd~~~~~~----~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~---h~~-- 227 (340)
T 1got_B 157 IVTSSGDTTCALWDIETGQQ----TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG---HES-- 227 (340)
T ss_dssp EEEEETTSCEEEEETTTTEE----EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECC---CSS--
T ss_pred EEEEECCCcEEEEECCCCcE----EEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcC---CcC--
Confidence 47899999999999988763 444558999999999999999999999999999999988765544421 122
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.+..++|+|++.+|++++.|+.|++||+++++.+..+..+........++|+| ++.+|++|+.|+.|++||+
T Consensus 228 ~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~d~~i~vwd~ 299 (340)
T 1got_B 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDA 299 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT-TSSEEEEEETTSEEEEEET
T ss_pred CEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECC-CCCEEEEECCCCeEEEEEc
Confidence 23467899999999999999999999999988877765332222336889999 8899999999999999996
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=162.30 Aligned_cols=142 Identities=15% Similarity=0.163 Sum_probs=120.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|++|+.|+.|++|+++.++. ...+..|...|.+++|+|++++|++++.|+.|++||+++.+....+.. +...+
T Consensus 137 l~~g~~dg~v~i~~~~~~~~----~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~---h~~~v 209 (321)
T 3ow8_A 137 LATGTHVGKVNIFGVESGKK----EYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEG---HAMPI 209 (321)
T ss_dssp EEEECTTSEEEEEETTTCSE----EEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC---CSSCC
T ss_pred EEEEcCCCcEEEEEcCCCce----eEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcc---cCCce
Confidence 57899999999999987764 445558889999999999999999999999999999998766544431 11222
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
..++|+|++++|++++.|+.|++||+++++.+..+.+|...+ ..++|+| ++.+|++++.|++|++||++
T Consensus 210 --~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v--~~~~~sp-~~~~l~s~s~D~~v~iwd~~ 278 (321)
T 3ow8_A 210 --RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWV--LNVAFCP-DDTHFVSSSSDKSVKVWDVG 278 (321)
T ss_dssp --CEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCE--EEEEECT-TSSEEEEEETTSCEEEEETT
T ss_pred --eEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCce--EEEEECC-CCCEEEEEeCCCcEEEEeCC
Confidence 357899999999999999999999999999998888776554 5789999 78999999999999999973
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-29 Score=160.43 Aligned_cols=146 Identities=12% Similarity=0.057 Sum_probs=106.8
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecc---cCCeEEEEEcCCCCEE------------EEeeCCCeEEEEeccccc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSH---KRAVHSAYFSPSGSSL------------ATTSFDDTIGIWSGVNFE 65 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l------------~~~~~d~~v~~~~~~~~~ 65 (154)
|++|+.|++|+|||+.+++. ...+.+| ...+.+++|+|+|.++ ++|+.|+++++||..+++
T Consensus 196 LaSgS~D~TIkIWDl~TGk~----l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk 271 (356)
T 2w18_A 196 LLGTTIMNNIVIWNLKTGQL----LKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL 271 (356)
T ss_dssp EEEEETTSEEEEEETTTCCE----EEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTE
T ss_pred EEEecCCCcEEEEECCCCcE----EEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE
Confidence 47899999999999998873 3333344 3478888999999876 567889999999998887
Q ss_pred cceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCC
Q 038702 66 NTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGG 145 (154)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 145 (154)
....+....+.++....+...+ ++.++++++.|++|+|||+.+++++.++.+|...+. ..++|+| ++++|++|+.|
T Consensus 272 ~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vv-s~vafSP-DG~~LaSGS~D 347 (356)
T 2w18_A 272 SVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHW-SFVKWSG-TDSHLLAGQKD 347 (356)
T ss_dssp EEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCC-CEEEECS-SSSEEEEECTT
T ss_pred EEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeE-EEEEECC-CCCEEEEEECC
Confidence 6544321111121111222223 378899999999999999999999999988776655 4579999 88999999999
Q ss_pred CeEEEeeCC
Q 038702 146 GQVYVWTSD 154 (154)
Q Consensus 146 ~~i~~wd~~ 154 (154)
++|++||+.
T Consensus 348 ~TIklWd~~ 356 (356)
T 2w18_A 348 GNIFVYHYS 356 (356)
T ss_dssp SCEEEEEEC
T ss_pred CcEEEecCC
Confidence 999999963
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-29 Score=159.98 Aligned_cols=141 Identities=21% Similarity=0.273 Sum_probs=116.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|++|+.|++|++||+.+++. ...+.+|...|.+++|+|++++|++++.|++|++||++.........|.. .+
T Consensus 80 l~s~s~D~~v~~wd~~~~~~----~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~----~v 151 (319)
T 3frx_A 80 ALSASWDKTLRLWDVATGET----YQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHND----WV 151 (319)
T ss_dssp EEEEETTSEEEEEETTTTEE----EEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSS----CE
T ss_pred EEEEeCCCEEEEEECCCCCe----eEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCC----cE
Confidence 57899999999999988764 45556999999999999999999999999999999997543333333322 23
Q ss_pred eEEEEEEcCC------CcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 81 SSFRAIWGWD------DSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 81 ~~~~~~~~~~------~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
..+.+.|. +.++++++.|+.|++||+++.+....+.+|...+ ..++|+| ++.+|++++.||.|++||+.
T Consensus 152 --~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v--~~~~~sp-~g~~l~s~~~dg~i~iwd~~ 226 (319)
T 3frx_A 152 --SQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNI--NTLTASP-DGTLIASAGKDGEIMLWNLA 226 (319)
T ss_dssp --EEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCE--EEEEECT-TSSEEEEEETTCEEEEEETT
T ss_pred --EEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcE--EEEEEcC-CCCEEEEEeCCCeEEEEECC
Confidence 35567774 4589999999999999999998888888776554 5789999 88999999999999999973
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.6e-29 Score=164.49 Aligned_cols=142 Identities=18% Similarity=0.269 Sum_probs=118.3
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCC--------------------CCEEEEeeCCCeEEEEe
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPS--------------------GSSLATTSFDDTIGIWS 60 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~~~d~~v~~~~ 60 (154)
|++|+.|++|++||+.+... ...+.+|...|.+++|+|+ +.+|++|+.|+.|++||
T Consensus 249 l~s~s~D~~v~vwd~~~~~~----~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd 324 (410)
T 1vyh_C 249 IASCSNDQTVRVWVVATKEC----KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD 324 (410)
T ss_dssp EEEEETTSCEEEEETTTCCE----EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEE
T ss_pred EEEEcCCCeEEEEECCCCce----eeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEE
Confidence 47899999999999987663 4445589999999999996 67899999999999999
Q ss_pred ccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEE
Q 038702 61 GVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLA 140 (154)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 140 (154)
++++.....+.. +... +..++|+|++++|++++.|+.|++||+.+++++..+.+|...+ .+++|+| ++.+|+
T Consensus 325 ~~~~~~~~~~~~---h~~~--v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v--~~l~~~~-~~~~l~ 396 (410)
T 1vyh_C 325 VSTGMCLMTLVG---HDNW--VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFV--TSLDFHK-TAPYVV 396 (410)
T ss_dssp TTTTEEEEEEEC---CSSC--EEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCE--EEEEECS-SSSCEE
T ss_pred CCCCceEEEEEC---CCCc--EEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcE--EEEEEcC-CCCEEE
Confidence 998776544431 2222 3367899999999999999999999999999999998776554 5789999 788999
Q ss_pred EEcCCCeEEEeeCC
Q 038702 141 GATGGGQVYVWTSD 154 (154)
Q Consensus 141 ~~~~d~~i~~wd~~ 154 (154)
+|+.|++|++||+.
T Consensus 397 sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 397 TGSVDQTVKVWECR 410 (410)
T ss_dssp EEETTSEEEEEC--
T ss_pred EEeCCCcEEEEeCC
Confidence 99999999999974
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-28 Score=156.68 Aligned_cols=142 Identities=17% Similarity=0.244 Sum_probs=119.4
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|++|+.|+.|++|++.+++. ...+.+|...|.+++|+|++++|++++.|+.|++||+++.+....+.. +..
T Consensus 38 l~s~~~dg~i~iw~~~~~~~----~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~---~~~-- 108 (312)
T 4ery_A 38 LASSSADKLIKIWGAYDGKF----EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG---HSN-- 108 (312)
T ss_dssp EEEEETTSCEEEEETTTCCE----EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC---CSS--
T ss_pred EEEeeCCCeEEEEeCCCccc----chhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcC---CCC--
Confidence 57899999999999987653 344458999999999999999999999999999999998776554432 111
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.+..+.|+|+++++++++.|+.|++||+++++.+..+..|...+ ..++|+| ++.+|++++.|+.|++||+.
T Consensus 109 ~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v--~~~~~~~-~~~~l~~~~~d~~i~~wd~~ 179 (312)
T 4ery_A 109 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV--SAVHFNR-DGSLIVSSSYDGLCRIWDTA 179 (312)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCE--EEEEECT-TSSEEEEEETTSCEEEEETT
T ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcE--EEEEEcC-CCCEEEEEeCCCcEEEEECC
Confidence 23467899999999999999999999999999988888665443 5789999 78999999999999999973
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.97 E-value=8e-29 Score=161.16 Aligned_cols=149 Identities=11% Similarity=0.104 Sum_probs=113.4
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
+++++.||+|++||+.+++..........+|.+.|.+++|+|++++|++++.|+.|++||+++++....+.. +..
T Consensus 108 ~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~---h~~-- 182 (357)
T 4g56_B 108 ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNA---HSS-- 182 (357)
T ss_dssp EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECC---CSS--
T ss_pred EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC---CCC--
Confidence 467899999999999887643333334458999999999999999999999999999999998776654431 222
Q ss_pred eEEEEEEcCCCc-EEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 81 SSFRAIWGWDDS-CIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 81 ~~~~~~~~~~~~-~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.+..++|+|++. ++++++.|+.|++||+++++....+..........+++|+|..+.+|++|+.|+.|++||+.
T Consensus 183 ~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~ 257 (357)
T 4g56_B 183 EVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK 257 (357)
T ss_dssp CEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESS
T ss_pred CEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECC
Confidence 234678999875 78999999999999999998877766444444457899999667899999999999999973
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-28 Score=162.10 Aligned_cols=141 Identities=19% Similarity=0.239 Sum_probs=116.6
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|++|+.|+.|++||+.+++. ...+.+|...|.+++|+|++++|++++.|++|++||+++.+....+.+..
T Consensus 138 l~s~~~d~~i~iwd~~~~~~----~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~------ 207 (393)
T 1erj_A 138 LATGAEDRLIRIWDIENRKI----VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED------ 207 (393)
T ss_dssp EEEEETTSCEEEEETTTTEE----EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS------
T ss_pred EEEEcCCCeEEEEECCCCcE----EEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCC------
Confidence 57899999999999987653 34445899999999999999999999999999999999877665554322
Q ss_pred eEEEEEEcC-CCcEEEEEccCCeEEEecCCCccceeEEe-------CCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 81 SSFRAIWGW-DDSCIFIGNMTRTVEVISPAQRRSVATLQ-------SPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 81 ~~~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
....++|+| +++++++++.|+.|++||+++++.+..+. +|.. .+ .+++|+| ++.+|++|+.|+.|++||
T Consensus 208 ~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~-~v-~~v~~~~-~g~~l~s~s~d~~v~~wd 284 (393)
T 1erj_A 208 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD-SV-YSVVFTR-DGQSVVSGSLDRSVKLWN 284 (393)
T ss_dssp CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSS-CE-EEEEECT-TSSEEEEEETTSEEEEEE
T ss_pred CcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCC-CE-EEEEECC-CCCEEEEEeCCCEEEEEE
Confidence 234568898 89999999999999999999998877763 3332 22 6789999 889999999999999999
Q ss_pred CC
Q 038702 153 SD 154 (154)
Q Consensus 153 ~~ 154 (154)
++
T Consensus 285 ~~ 286 (393)
T 1erj_A 285 LQ 286 (393)
T ss_dssp C-
T ss_pred CC
Confidence 73
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-28 Score=158.21 Aligned_cols=143 Identities=16% Similarity=0.160 Sum_probs=116.8
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC--CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP--SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (154)
|++|+.|++|++||+++++. ...+.+|...|.+++|+| +++.|++++.|++|++||+++.+....+. .+..
T Consensus 169 l~t~s~D~~v~lwd~~~~~~----~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~---~h~~ 241 (354)
T 2pbi_B 169 ILTASGDGTCALWDVESGQL----LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFE---THES 241 (354)
T ss_dssp EEEEETTSEEEEEETTTCCE----EEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEEC---CCSS
T ss_pred EEEEeCCCcEEEEeCCCCeE----EEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEec---CCCC
Confidence 57899999999999988763 445558999999999988 56899999999999999999877654442 1222
Q ss_pred eEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 79 WISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
. +..++|+|++.+|++++.|++|++||++.++.+..+..+........++|+| ++.+|++|+.|+.|++||+
T Consensus 242 ~--v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~l~~g~~d~~i~vwd~ 313 (354)
T 2pbi_B 242 D--VNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSL-SGRLLFAGYNDYTINVWDV 313 (354)
T ss_dssp C--EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEET
T ss_pred C--eEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeC-CCCEEEEEECCCcEEEEEC
Confidence 2 3467899999999999999999999999888776665443333336789999 8899999999999999997
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-28 Score=159.39 Aligned_cols=146 Identities=22% Similarity=0.332 Sum_probs=115.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|++|+.|+++++|++...... ....+.+|...|.+++|+|++++|++++.|++|++||++.............+...+
T Consensus 76 l~s~s~D~~v~iw~~~~~~~~--~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v 153 (345)
T 3fm0_A 76 LASASFDATTCIWKKNQDDFE--CVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDV 153 (345)
T ss_dssp EEEEETTSCEEEEEECCC-EE--EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCE
T ss_pred EEEEECCCcEEEEEccCCCeE--EEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCe
Confidence 578999999999998765310 023344899999999999999999999999999999998765443333222233333
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCcc--ceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRR--SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
..++|+|++.+|++++.|+.|++||.++++ +...+.+|...+ .+++|+| ++++|++++.|++|++||.
T Consensus 154 --~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v--~~l~~sp-~g~~l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 154 --KHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTV--WSLAFDP-SGQRLASCSDDRTVRIWRQ 223 (345)
T ss_dssp --EEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCE--EEEEECT-TSSEEEEEETTSCEEEEEE
T ss_pred --EEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCce--EEEEECC-CCCEEEEEeCCCeEEEecc
Confidence 467899999999999999999999998765 345676665444 6889999 8899999999999999984
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-28 Score=154.64 Aligned_cols=143 Identities=18% Similarity=0.243 Sum_probs=119.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|++|+.|+.|++||+++++. ...+.+|...|.+++|+|++++|++++.|+.|++||+++.+....+.. +...
T Consensus 80 l~s~~~d~~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~- 151 (312)
T 4ery_A 80 LVSASDDKTLKIWDVSSGKC----LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA---HSDP- 151 (312)
T ss_dssp EEEEETTSEEEEEETTTCCE----EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECC---CSSC-
T ss_pred EEEECCCCEEEEEECCCCcE----EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecC---CCCc-
Confidence 57899999999999987763 445558999999999999999999999999999999998766544432 1222
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
...++|+|+++++++++.|+.|++||+++++.+..+..++...+ ..++|+| ++++|++++.|+.|++||+.
T Consensus 152 -v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~l~~~~~d~~i~iwd~~ 222 (312)
T 4ery_A 152 -VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV-SFVKFSP-NGKYILAATLDNTLKLWDYS 222 (312)
T ss_dssp -EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCE-EEEEECT-TSSEEEEEETTTEEEEEETT
T ss_pred -EEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCce-EEEEECC-CCCEEEEEcCCCeEEEEECC
Confidence 34678999999999999999999999999988887765444444 6789999 88999999999999999973
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=160.54 Aligned_cols=143 Identities=12% Similarity=0.092 Sum_probs=106.0
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE-----------
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI----------- 70 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~----------- 70 (154)
++++.|++|++||+++.+ ......|...|.+++|+|+|+++++++.++ +.+|+..+.+.....
T Consensus 151 as~~~d~~i~iwd~~~~~-----~~~~~~~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~ 224 (365)
T 4h5i_A 151 ASSKVPAIMRIIDPSDLT-----EKFEIETRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARKTDFDKNWSLSK 224 (365)
T ss_dssp EESCSSCEEEEEETTTTE-----EEEEEECSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEECCCCTTEEEEE
T ss_pred EECCCCCEEEEeECCCCc-----EEEEeCCCCceEEEEEccCCceEEecccee-EEEEEeccCcceeeeecCCCCCCEEE
Confidence 456789999999998766 444557888999999999999999998665 445544432211000
Q ss_pred --ee-----------cCC-----------------------CCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccce
Q 038702 71 --HH-----------NNQ-----------------------TGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSV 114 (154)
Q Consensus 71 --~~-----------~~~-----------------------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~ 114 (154)
.. ... .++...+.+++|+|++++|++|+.|+.|+|||+++++++
T Consensus 225 v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~ 304 (365)
T 4h5i_A 225 INFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMS 304 (365)
T ss_dssp EEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEE
T ss_pred EEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEE
Confidence 00 000 000011335789999999999999999999999999999
Q ss_pred eEE-eCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 115 ATL-QSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 115 ~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
..+ .+|...+ .+++|+| ++++|++|+.|++|+|||+
T Consensus 305 ~~~~~gH~~~V--~~v~fSp-dg~~laS~S~D~tvrvw~i 341 (365)
T 4h5i_A 305 KIFKQAHSFAI--TEVTISP-DSTYVASVSAANTIHIIKL 341 (365)
T ss_dssp EEETTSSSSCE--EEEEECT-TSCEEEEEETTSEEEEEEC
T ss_pred EEecCcccCCE--EEEEECC-CCCEEEEEeCCCeEEEEEc
Confidence 886 4554443 6899999 8999999999999999997
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=168.98 Aligned_cols=145 Identities=23% Similarity=0.325 Sum_probs=115.3
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeec----CCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHN----NQT 76 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~----~~~ 76 (154)
|++|+.|++|++||....+. ...+.+|...|.+++|+|++++|++++.|++|++||+.+++....+... ..+
T Consensus 163 l~s~s~D~~v~lwd~~~~~~----~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h 238 (611)
T 1nr0_A 163 IISGSDDNTVAIFEGPPFKF----KSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAH 238 (611)
T ss_dssp EEEEETTSCEEEEETTTBEE----EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSS
T ss_pred EEEEeCCCeEEEEECCCCeE----eeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeecccccccccc
Confidence 57899999999999876542 3344589999999999999999999999999999999887665444210 012
Q ss_pred CceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEe--------------------------------------
Q 038702 77 GRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQ-------------------------------------- 118 (154)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-------------------------------------- 118 (154)
.. .+..++|+|++++|++++.|++|++||+++++.+.++.
T Consensus 239 ~~--~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~ 316 (611)
T 1nr0_A 239 SG--SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSI 316 (611)
T ss_dssp SS--CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEE
T ss_pred CC--CEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCc
Confidence 22 34577999999999999999999999999877655443
Q ss_pred -----CCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 119 -----SPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 119 -----~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
+|.. . ..+++|+| ++++|++++.|++|++||++
T Consensus 317 ~~~~~gh~~-~-v~~l~~sp-dg~~l~s~s~D~~v~~Wd~~ 354 (611)
T 1nr0_A 317 DQVRYGHNK-A-ITALSSSA-DGKTLFSADAEGHINSWDIS 354 (611)
T ss_dssp EEEECCCSS-C-EEEEEECT-TSSEEEEEETTSCEEEEETT
T ss_pred ceEEcCCCC-C-EEEEEEeC-CCCEEEEEeCCCcEEEEECC
Confidence 2322 2 26789999 88999999999999999973
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.96 E-value=4.8e-28 Score=156.66 Aligned_cols=142 Identities=16% Similarity=0.227 Sum_probs=112.4
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
+++|+.|++|++||+++++. ...+.+|...|.+++|+|++++|++++.|++|++||+....... ......+...+
T Consensus 91 l~s~s~D~~v~lwd~~~~~~----~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~~~v 165 (343)
T 2xzm_R 91 AISSSWDKTLRLWDLRTGTT----YKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFS-SAEKENHSDWV 165 (343)
T ss_dssp EEEEETTSEEEEEETTSSCE----EEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEE-CCTTTSCSSCE
T ss_pred EEEEcCCCcEEEEECCCCcE----EEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceee-eecccCCCcee
Confidence 47899999999999988763 44556999999999999999999999999999999997432211 11111222233
Q ss_pred eEEEEEEcCCC----------cEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEE
Q 038702 81 SSFRAIWGWDD----------SCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYV 150 (154)
Q Consensus 81 ~~~~~~~~~~~----------~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~ 150 (154)
..++|+|++ .++++++.|+.|++||. ..+....+.+|...+ ..++|+| ++.+|++|+.|+.|++
T Consensus 166 --~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v--~~~~~s~-~g~~l~sgs~dg~v~i 239 (343)
T 2xzm_R 166 --SCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNV--NHLSISP-NGKYIATGGKDKKLLI 239 (343)
T ss_dssp --EEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCE--EEEEECT-TSSEEEEEETTCEEEE
T ss_pred --eeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccc--eEEEECC-CCCEEEEEcCCCeEEE
Confidence 356788876 78999999999999994 456666777665544 5789999 8899999999999999
Q ss_pred eeC
Q 038702 151 WTS 153 (154)
Q Consensus 151 wd~ 153 (154)
||+
T Consensus 240 wd~ 242 (343)
T 2xzm_R 240 WDI 242 (343)
T ss_dssp EES
T ss_pred EEC
Confidence 997
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-28 Score=157.35 Aligned_cols=149 Identities=21% Similarity=0.237 Sum_probs=106.9
Q ss_pred CeeecCCCcEEEEEccCCCCC--CCCCc-eeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccc-cceeEeecCCC
Q 038702 1 MATSSTDGTACIWDLRSMATD--KPEPT-KVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFE-NTAMIHHNNQT 76 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~--~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~-~~~~~~~~~~~ 76 (154)
|++|+.|++|++||+...... ..... .+.+|...|.+++|+|++++|++++.|++|++||++... ..........+
T Consensus 73 las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h 152 (330)
T 2hes_X 73 LAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEH 152 (330)
T ss_dssp EEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCC
T ss_pred EEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccC
Confidence 578999999999998643211 11122 334899999999999999999999999999999995432 22222222222
Q ss_pred CceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCc--cceeEEeCCCcCCcceEEEecCCC-ccEEEEEcCCCeEEEeeC
Q 038702 77 GRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQR--RSVATLQSPYISAIPCRFHAHPHQ-VGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~~wd~ 153 (154)
... +..++|+|++.+|++++.|++|++||..++ +++..+.+|...+ ..++|+|.. +.+|++++.|++|++||+
T Consensus 153 ~~~--v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v--~~~~~~~~~~~~~l~s~s~D~~v~iw~~ 228 (330)
T 2hes_X 153 SQD--VKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTV--WSSDFDKTEGVFRLCSGSDDSTVRVWKY 228 (330)
T ss_dssp SSC--EEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCE--EEEEECCSSSSCEEEEEETTSCEEEEEE
T ss_pred CCc--eEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcE--EEEEecCCCCeeEEEEEeCCCeEEEEEe
Confidence 223 346789999999999999999999998765 6777888776554 578899832 568999999999999986
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=158.26 Aligned_cols=145 Identities=21% Similarity=0.287 Sum_probs=107.8
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCce-e-ec-ccCCeEEEEEcCCCCEEEEeeCCCeEEEEecccccc----ceeEeec
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTK-V-LS-HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN----TAMIHHN 73 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~-~-~~-~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~----~~~~~~~ 73 (154)
|++|+.|++|++||+..+... ... + .+ |...|.+++|+|++++|++++.|++|++||++.... .......
T Consensus 27 las~~~D~~i~lw~~~~~~~~---~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~ 103 (330)
T 2hes_X 27 LATGSTDRKIKLVSVKYDDFT---LIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAII 103 (330)
T ss_dssp EEEEESSSCEEEEECSSSCCE---EEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEE
T ss_pred EEEEcCCCEEEEEEecCCCeE---EEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEE
Confidence 589999999999999764321 222 2 23 999999999999999999999999999999864321 1111111
Q ss_pred CCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCc----cceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEE
Q 038702 74 NQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQR----RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVY 149 (154)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 149 (154)
..+.. .+..++|+|++++|++++.|++|++||++.. +++..+.+|...+ ..++|+| ++.+|++++.|++|+
T Consensus 104 ~~h~~--~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v--~~v~~~p-~~~~l~s~s~D~~i~ 178 (330)
T 2hes_X 104 EGHEN--EVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDV--KHVIWHP-SEALLASSSYDDTVR 178 (330)
T ss_dssp C------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCE--EEEEECS-SSSEEEEEETTSCEE
T ss_pred cCCCC--cEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCce--EEEEECC-CCCEEEEEcCCCeEE
Confidence 12222 3446789999999999999999999999532 4556676665444 5789999 789999999999999
Q ss_pred EeeC
Q 038702 150 VWTS 153 (154)
Q Consensus 150 ~wd~ 153 (154)
+||+
T Consensus 179 iW~~ 182 (330)
T 2hes_X 179 IWKD 182 (330)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9985
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=159.69 Aligned_cols=145 Identities=17% Similarity=0.184 Sum_probs=117.9
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCC-EEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGS-SLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
|++|+.|+.|++||+++++. ...+.+|...|.+++|+|++. .+++++.|++|++||+++++.......... .
T Consensus 154 l~sgs~dg~v~iwd~~~~~~----~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~-~-- 226 (357)
T 4g56_B 154 AVSGGKDFSVKVWDLSQKAV----LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCAS-D-- 226 (357)
T ss_dssp EEEEETTSCEEEEETTTTEE----EEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTC-C--
T ss_pred EEEEeCCCeEEEEECCCCcE----EEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccc-c--
Confidence 57899999999999988763 444558999999999999875 789999999999999998776554432211 1
Q ss_pred EeEEEEEEcCC-CcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 80 ISSFRAIWGWD-DSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 80 ~~~~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.....++|+|+ +.+|++|+.|+.|++||+++++.+..+.++...+ ..++|+|..+.+|++|+.|++|++||++
T Consensus 227 ~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v--~~l~~sp~~~~~lasgs~D~~i~iwd~~ 300 (357)
T 4g56_B 227 TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNI--TGLAYSYHSSPFLASISEDCTVAVLDAD 300 (357)
T ss_dssp SCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCE--EEEEECSSSSCCEEEEETTSCEEEECTT
T ss_pred ccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeE--EEEEEcCCCCCEEEEEeCCCEEEEEECC
Confidence 12346789997 4688999999999999999999999998776554 5789999555789999999999999974
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=152.09 Aligned_cols=147 Identities=18% Similarity=0.196 Sum_probs=111.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCC--CCEEEEeeCCCeEEEEeccccccceeEeecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPS--GSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (154)
|++|+.|++|++||++++... ....+.+|...|.+++|+|+ +.+|++++.|+.|++||++.......... ..+..
T Consensus 70 l~s~s~D~~v~iWd~~~~~~~--~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~-~~h~~ 146 (297)
T 2pm7_B 70 LASCSYDGKVMIWKEENGRWS--QIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIII-DAHAI 146 (297)
T ss_dssp EEEEETTTEEEEEEBSSSCBC--CCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEE-ECCSS
T ss_pred EEEEcCCCEEEEEEcCCCceE--EEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeee-ecccC
Confidence 579999999999999875321 13344579999999999997 88999999999999999987642211111 11111
Q ss_pred eEeEEEEEEcCC-------------CcEEEEEccCCeEEEecCCCcc----ceeEEeCCCcCCcceEEEecCCC--ccEE
Q 038702 79 WISSFRAIWGWD-------------DSCIFIGNMTRTVEVISPAQRR----SVATLQSPYISAIPCRFHAHPHQ--VGTL 139 (154)
Q Consensus 79 ~~~~~~~~~~~~-------------~~~l~~~~~d~~i~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~~l 139 (154)
.+..++|+|+ +++|++++.|+.|++||+++++ ....+.+|...+ .+++|+|.. +.+|
T Consensus 147 --~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V--~~v~~sp~~~~~~~l 222 (297)
T 2pm7_B 147 --GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV--RDVAWSPTVLLRSYM 222 (297)
T ss_dssp --CEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE--EEEEECCCCSSSEEE
T ss_pred --ccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCce--EEEEECCCCCCceEE
Confidence 2346789986 5799999999999999998765 456677665544 578999932 5899
Q ss_pred EEEcCCCeEEEeeCC
Q 038702 140 AGATGGGQVYVWTSD 154 (154)
Q Consensus 140 ~~~~~d~~i~~wd~~ 154 (154)
++++.|++|++||++
T Consensus 223 as~s~D~~v~iWd~~ 237 (297)
T 2pm7_B 223 ASVSQDRTCIIWTQD 237 (297)
T ss_dssp EEEETTSCEEEEEES
T ss_pred EEEECCCcEEEEEeC
Confidence 999999999999863
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=167.16 Aligned_cols=142 Identities=11% Similarity=0.101 Sum_probs=116.9
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCc-eeecccCCeEEE--EEcCCC-CEEEEeeCCCeEEEEeccccccceeEe-ecCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPT-KVLSHKRAVHSA--YFSPSG-SSLATTSFDDTIGIWSGVNFENTAMIH-HNNQ 75 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~-~~~~~~~~v~~~--~~~~~~-~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~ 75 (154)
|++|+.||+|++||++++.. +. .+.+|...|.++ .|+|++ ++|++++.|++|++||+++.+....+. +...
T Consensus 280 lasgs~DgtV~lWD~~~~~~----~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~ 355 (524)
T 2j04_B 280 VVCGFKNGFVAEFDLTDPEV----PSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRG 355 (524)
T ss_dssp EEEEETTSEEEEEETTBCSS----CSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSC
T ss_pred EEEEeCCCEEEEEECCCCCC----ceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccccc
Confidence 58999999999999987543 33 355899999999 578887 899999999999999999877654432 3221
Q ss_pred CCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 76 TGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
. .+..++|+|+++.+++++.|++|++||++++.++.++.+|...+ .+++|+| ++.+|++|+.|++|++||+
T Consensus 356 ~----~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V--~sva~Sp-~g~~l~Sgs~Dgtv~lwd~ 426 (524)
T 2j04_B 356 S----NLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTI--TAIGVSR-LHPMVLAGSADGSLIITNA 426 (524)
T ss_dssp C----SCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCE--EEEECCS-SCCBCEEEETTTEEECCBS
T ss_pred C----cccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCce--EEEEeCC-CCCeEEEEECCCEEEEEec
Confidence 0 12356899999999999999999999999999888888776554 5889999 7889999999999999996
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-28 Score=164.31 Aligned_cols=146 Identities=13% Similarity=0.119 Sum_probs=113.6
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
||+|+.||.|+|||+...+.. ......+|.+.|++++|+| ++++|++++.|++|++||+++.......... ...
T Consensus 135 lasGs~dg~i~lWd~~~~~~~--~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-~~~-- 209 (435)
T 4e54_B 135 VAVGSKGGDIMLWNFGIKDKP--TFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSD-TIN-- 209 (435)
T ss_dssp EEEEETTSCEEEECSSCCSCC--EEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCS-SCS--
T ss_pred EEEEeCCCEEEEEECCCCCce--eEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccC-CCC--
Confidence 578999999999999876531 1223448999999999998 7899999999999999999865443333221 111
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.....++|+|++.+|++|+.||.|++||++. +.+..+.+|...+ .+++|+|....+|++++.|+.|++||+.
T Consensus 210 ~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v--~~v~~~p~~~~~~~s~s~d~~v~iwd~~ 281 (435)
T 4e54_B 210 IWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKV--THVALNPCCDWFLATASVDQTVKIWDLR 281 (435)
T ss_dssp CCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCE--EEEEECTTCSSEEEEEETTSBCCEEETT
T ss_pred ccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceE--EeeeecCCCceEEEEecCcceeeEEecc
Confidence 2233568999999999999999999999864 5566777665544 5789999656689999999999999973
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-27 Score=157.11 Aligned_cols=148 Identities=15% Similarity=0.275 Sum_probs=119.3
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|++|+.|+.|++||+.+++. ...+.+|...|.+++|+|++++|++++.|+.|++||+++.+....+.........+
T Consensus 154 l~s~s~d~~i~iwd~~~~~~----~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v 229 (420)
T 3vl1_A 154 LISSSQDMQLKIWSVKDGSN----PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGV 229 (420)
T ss_dssp EEEEETTSEEEEEETTTCCC----CEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCE
T ss_pred EEEEeCCCeEEEEeCCCCcC----ceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCc
Confidence 57899999999999988764 55556899999999999999999999999999999999887665554222222222
Q ss_pred eEE-------------------EEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCcc-EEE
Q 038702 81 SSF-------------------RAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVG-TLA 140 (154)
Q Consensus 81 ~~~-------------------~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~ 140 (154)
..+ .++|+|+++++++++.||.|++||+++++.+..+...+...+ .+++|+| ++. +|+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v-~~~~~~~-~~~~~l~ 307 (420)
T 3vl1_A 230 NSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSC-NSLTVDG-NNANYIY 307 (420)
T ss_dssp EEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCE-EEEEECS-SCTTEEE
T ss_pred cEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCc-eeEEEeC-CCCCEEE
Confidence 221 235789999999999999999999999988888765444444 7899999 555 999
Q ss_pred EEcCCCeEEEeeCC
Q 038702 141 GATGGGQVYVWTSD 154 (154)
Q Consensus 141 ~~~~d~~i~~wd~~ 154 (154)
+|+.||.|++||+.
T Consensus 308 ~g~~dg~i~vwd~~ 321 (420)
T 3vl1_A 308 AGYENGMLAQWDLR 321 (420)
T ss_dssp EEETTSEEEEEETT
T ss_pred EEeCCCeEEEEEcC
Confidence 99999999999973
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.4e-28 Score=156.59 Aligned_cols=145 Identities=21% Similarity=0.234 Sum_probs=111.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCcee-ecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKV-LSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
|++|+.|++|++||+....... .... .+|...|.+++|+|++++|++++.|+++++|++.......... ...+...
T Consensus 31 las~~~D~~i~iw~~~~~~~~~--~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~-~~~h~~~ 107 (345)
T 3fm0_A 31 LASCGGDRRIRIWGTEGDSWIC--KSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTT-LEGHENE 107 (345)
T ss_dssp EEEEETTSCEEEEEEETTEEEE--EEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEE-ECCCSSC
T ss_pred EEEEcCCCeEEEEEcCCCccee--eeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEE-ccCCCCC
Confidence 5789999999999997654200 1112 3799999999999999999999999999999987654322111 1112222
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCcc---ceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRR---SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+..++|+|++++|++++.|+.|++||+++++ .+..+.+|...+ ..++|+| ++.+|++++.|+.|++||+
T Consensus 108 --v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v--~~~~~~p-~~~~l~s~s~d~~i~~w~~ 179 (345)
T 3fm0_A 108 --VKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDV--KHVVWHP-SQELLASASYDDTVKLYRE 179 (345)
T ss_dssp --EEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCE--EEEEECS-SSSCEEEEETTSCEEEEEE
T ss_pred --ceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCe--EEEEECC-CCCEEEEEeCCCcEEEEEe
Confidence 3467899999999999999999999998764 345555554443 5789999 7899999999999999985
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-27 Score=152.64 Aligned_cols=141 Identities=14% Similarity=0.253 Sum_probs=114.4
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
+++++.|+.|++||++..+. ...+.+|...|.+++|+|++++|++++.|+.|++||+++.+....+....
T Consensus 169 l~s~~~d~~i~~wd~~~~~~----~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------ 238 (319)
T 3frx_A 169 IISAGNDKMVKAWNLNQFQI----EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD------ 238 (319)
T ss_dssp EEEEETTSCEEEEETTTTEE----EEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCS------
T ss_pred EEEEeCCCEEEEEECCcchh----heeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC------
Confidence 47899999999999987653 44455999999999999999999999999999999999887665554322
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCc------CCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYI------SAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
....++|+|++.++++++. +.+++|++.....+..+..+.. .....+++|+| ++++|++|+.|+.|++||+
T Consensus 239 ~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~sg~~Dg~i~vWd~ 315 (319)
T 3frx_A 239 EVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA-DGQTLFAGYTDNVIRVWQV 315 (319)
T ss_dssp CEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECT-TSSEEEEEETTSCEEEEEE
T ss_pred cEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECC-CCCEEEEeecCceEEEEEE
Confidence 2457799999999988775 4699999998777766653311 12236789999 8899999999999999996
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=157.24 Aligned_cols=145 Identities=20% Similarity=0.261 Sum_probs=111.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCcee-------ecccCCeEEEEEcCCCCEEEEeeCCCeEEEEecccccccee----
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKV-------LSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAM---- 69 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~---- 69 (154)
|++|+.|+.|++||++++.. ...+ .+|...|.+++|+|++++|++++.|+.|++||+++......
T Consensus 222 l~~~s~d~~v~iwd~~~~~~----~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~ 297 (393)
T 1erj_A 222 IAAGSLDRAVRVWDSETGFL----VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 297 (393)
T ss_dssp EEEEETTSCEEEEETTTCCE----EEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------
T ss_pred EEEEcCCCcEEEEECCCCcE----EEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCC
Confidence 57899999999999987642 1111 47999999999999999999999999999999986533211
Q ss_pred -----EeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCC-----CccEE
Q 038702 70 -----IHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPH-----QVGTL 139 (154)
Q Consensus 70 -----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l 139 (154)
......+.. .+..++|+|++.+|++++.|+.|++||.++++.+..+.+|...+. .++++|. ++++|
T Consensus 298 ~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~--~v~~~~~~~~~p~~~~l 373 (393)
T 1erj_A 298 NSGTCEVTYIGHKD--FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVI--SVAVANGSSLGPEYNVF 373 (393)
T ss_dssp ---CEEEEEECCSS--CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE--EEEECSSCTTCTTCEEE
T ss_pred CCCcceEEEecccC--cEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEE--EEEecCCcCcCCCCCEE
Confidence 001111122 244678999999999999999999999999999999998876654 5666541 57899
Q ss_pred EEEcCCCeEEEeeC
Q 038702 140 AGATGGGQVYVWTS 153 (154)
Q Consensus 140 ~~~~~d~~i~~wd~ 153 (154)
++|+.||+|++|++
T Consensus 374 ~sgs~Dg~i~iW~~ 387 (393)
T 1erj_A 374 ATGSGDCKARIWKY 387 (393)
T ss_dssp EEEETTSEEEEEEE
T ss_pred EEECCCCcEEECcc
Confidence 99999999999996
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-27 Score=167.31 Aligned_cols=145 Identities=19% Similarity=0.285 Sum_probs=118.4
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|++|+.|++|++||+.++.. ...+.+|...|.+++|+|++++|++++.|++|++||...............+...+
T Consensus 445 l~sgs~Dg~v~vwd~~~~~~----~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v 520 (694)
T 3dm0_A 445 ALSGSWDGELRLWDLAAGVS----TRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWV 520 (694)
T ss_dssp EEEEETTSEEEEEETTTTEE----EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCE
T ss_pred EEEEeCCCcEEEEECCCCcc----eeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcE
Confidence 57899999999999988763 44556999999999999999999999999999999986543333222222233333
Q ss_pred eEEEEEEcCCC--cEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 81 SSFRAIWGWDD--SCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 81 ~~~~~~~~~~~--~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.+++|+|++ ..+++++.|+.|++||+++++....+.+|...+ .+++|+| ++.+|++|+.||.|++||+.
T Consensus 521 --~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v--~~v~~sp-dg~~l~sg~~Dg~i~iwd~~ 591 (694)
T 3dm0_A 521 --SCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYV--STVAVSP-DGSLCASGGKDGVVLLWDLA 591 (694)
T ss_dssp --EEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCE--EEEEECT-TSSEEEEEETTSBCEEEETT
T ss_pred --EEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCE--EEEEEeC-CCCEEEEEeCCCeEEEEECC
Confidence 466899986 589999999999999999999988888776544 5789999 88999999999999999973
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-27 Score=162.23 Aligned_cols=137 Identities=23% Similarity=0.329 Sum_probs=111.8
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|++++.|+.|++||... +. ...+.+|...|.+++|+|++++|++++.|+.|++||...........|..
T Consensus 441 l~~~~~d~~v~~w~~~~-~~----~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~------ 509 (577)
T 2ymu_A 441 IASASDDKTVKLWNRNG-QL----LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS------ 509 (577)
T ss_dssp EEEEETTSEEEEEETTS-CE----EEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSS------
T ss_pred EEEEcCCCEEEEEECCC-CE----EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCC------
Confidence 47899999999999743 21 44556999999999999999999999999999999964332222222322
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
.+..++|+|++++|++++.|+.|++||. +++.+..+.+|...+ ..++|+| ++++|++++.|++|++||
T Consensus 510 ~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v--~~~~fs~-dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 510 SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV--WGVAFSP-DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCE--EEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred CEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCE--EEEEEcC-CCCEEEEEeCCCEEEEeC
Confidence 2346789999999999999999999995 678888998876554 5789999 889999999999999998
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-27 Score=155.06 Aligned_cols=142 Identities=17% Similarity=0.172 Sum_probs=113.5
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCcee-----ecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccc-cceeE-ee
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKV-----LSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFE-NTAMI-HH 72 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~-~~~~~-~~ 72 (154)
|++|+.|++|++||+.+++. ...+ .+|...|.+++|++ ++++|++|+.|++|++||++... ....+ .|
T Consensus 173 l~s~s~D~~i~~wd~~~~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h 248 (380)
T 3iz6_a 173 LITGSGDQTCVLWDVTTGQR----ISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGH 248 (380)
T ss_dssp EEEECTTSCEEEECTTTCCE----EEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCC
T ss_pred EEEECCCCcEEEEEcCCCcE----EEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCc
Confidence 57899999999999988653 2222 37899999999987 88999999999999999998543 33222 23
Q ss_pred cCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcC-----CcceEEEecCCCccEEEEEcCCCe
Q 038702 73 NNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYIS-----AIPCRFHAHPHQVGTLAGATGGGQ 147 (154)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~d~~ 147 (154)
.. .+ ..++|+|++++|++++.|++|++||+++++.+..+..+... .....++|+| ++.+|++|+.||.
T Consensus 249 ~~----~v--~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~ 321 (380)
T 3iz6_a 249 EG----DI--NSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI-SGRLLFAGYSNGD 321 (380)
T ss_dssp SS----CC--CEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECS-SSSEEEEECTTSC
T ss_pred CC----Ce--EEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECC-CCCEEEEEECCCC
Confidence 22 23 36789999999999999999999999999988877643221 1236789999 8899999999999
Q ss_pred EEEeeC
Q 038702 148 VYVWTS 153 (154)
Q Consensus 148 i~~wd~ 153 (154)
|++||+
T Consensus 322 i~vwd~ 327 (380)
T 3iz6_a 322 CYVWDT 327 (380)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 999996
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.96 E-value=8.9e-27 Score=148.10 Aligned_cols=146 Identities=17% Similarity=0.235 Sum_probs=109.6
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC--CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP--SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (154)
|++|+.|++|++||+...... ....+.+|.++|.+++|+| ++++|++++.|++|++||+++++........ .+..
T Consensus 24 las~s~D~~v~iw~~~~~~~~--~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~-~h~~ 100 (297)
T 2pm7_B 24 MATCSSDKTIKIFEVEGETHK--LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHA-VHSA 100 (297)
T ss_dssp EEEEETTSCEEEEEBCSSCBC--CCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEEC-CCSS
T ss_pred EEEEeCCCEEEEEecCCCCcE--EEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEee-cCCC
Confidence 589999999999999753211 1344559999999999986 4899999999999999999876432221111 1222
Q ss_pred eEeEEEEEEcCC--CcEEEEEccCCeEEEecCCCccc--eeEEeCCCcCCcceEEEecCCC------------ccEEEEE
Q 038702 79 WISSFRAIWGWD--DSCIFIGNMTRTVEVISPAQRRS--VATLQSPYISAIPCRFHAHPHQ------------VGTLAGA 142 (154)
Q Consensus 79 ~~~~~~~~~~~~--~~~l~~~~~d~~i~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~------------~~~l~~~ 142 (154)
. +..++|+|+ +.+|++++.|+.|++||++++.. ...+.+|...+ ..++|+|.. +.+|++|
T Consensus 101 ~--v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v--~~~~~~p~~~~~~~~~~~~~~~~~l~sg 176 (297)
T 2pm7_B 101 S--VNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGV--NSASWAPATIEEDGEHNGTKESRKFVTG 176 (297)
T ss_dssp C--EEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCE--EEEEECCCC------------CCEEEEE
T ss_pred c--eeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCcc--ceEeecCCcccccccCCCCCCcceEEEE
Confidence 2 346789997 88999999999999999987642 34555555444 578888831 4689999
Q ss_pred cCCCeEEEeeC
Q 038702 143 TGGGQVYVWTS 153 (154)
Q Consensus 143 ~~d~~i~~wd~ 153 (154)
+.|++|++||+
T Consensus 177 s~D~~v~lwd~ 187 (297)
T 2pm7_B 177 GADNLVKIWKY 187 (297)
T ss_dssp ETTSCEEEEEE
T ss_pred cCCCcEEEEEE
Confidence 99999999986
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.6e-27 Score=154.06 Aligned_cols=149 Identities=17% Similarity=0.250 Sum_probs=118.5
Q ss_pred CeeecCCCcEEEEEccCCCCCC---CCCceeecccCCeEEEEEcCCC-CEEEEeeCCCeEEEEeccccccceeEeecCCC
Q 038702 1 MATSSTDGTACIWDLRSMATDK---PEPTKVLSHKRAVHSAYFSPSG-SSLATTSFDDTIGIWSGVNFENTAMIHHNNQT 76 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~ 76 (154)
|++|+.||.|++||+..+.... .....+.+|...|.+++|+|++ +.|++++.|+.|++||+++.+....+.. ..+
T Consensus 97 l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~ 175 (402)
T 2aq5_A 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP-DVH 175 (402)
T ss_dssp EEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT-TTC
T ss_pred EEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec-CCC
Confidence 5789999999999998763211 1134455899999999999998 6999999999999999998766554420 112
Q ss_pred CceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEE-eCCCcCCcceEEEecCCCccEEEEE---cCCCeEEEee
Q 038702 77 GRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATL-QSPYISAIPCRFHAHPHQVGTLAGA---TGGGQVYVWT 152 (154)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~---~~d~~i~~wd 152 (154)
.. .+..++|+|++.+|++++.|+.|++||+++++.+..+ ..|... ....+.|+| ++.+|++| +.|+.|++||
T Consensus 176 ~~--~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~l~~g~~~~~d~~i~iwd 251 (402)
T 2aq5_A 176 PD--TIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGT-RPVHAVFVS-EGKILTTGFSRMSERQVALWD 251 (402)
T ss_dssp CS--CEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSS-SCCEEEECS-TTEEEEEEECTTCCEEEEEEE
T ss_pred CC--ceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCC-cceEEEEcC-CCcEEEEeccCCCCceEEEEc
Confidence 22 3446789999999999999999999999999998888 455443 236789999 78899999 7999999999
Q ss_pred CC
Q 038702 153 SD 154 (154)
Q Consensus 153 ~~ 154 (154)
+.
T Consensus 252 ~~ 253 (402)
T 2aq5_A 252 TK 253 (402)
T ss_dssp TT
T ss_pred Cc
Confidence 73
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-27 Score=151.39 Aligned_cols=139 Identities=14% Similarity=0.138 Sum_probs=112.1
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEe
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWIS 81 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (154)
++++.|+.|++||+++.+. ...+.+|.+.|.+++|+|++++|++++.|+.|++||+++.+....+.... .
T Consensus 189 ~s~~~d~~i~i~d~~~~~~----~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~------~ 258 (340)
T 4aow_A 189 VSCGWDKLVKVWNLANCKL----KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD------I 258 (340)
T ss_dssp EEEETTSCEEEEETTTTEE----EEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSS------C
T ss_pred EEEcCCCEEEEEECCCCce----eeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCc------e
Confidence 6789999999999988763 44455899999999999999999999999999999999887766554432 2
Q ss_pred EEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCC--------CcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 82 SFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSP--------YISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
...+.|+|++.+ ++++.|+.|++||++++..+..+..+ +... ..+++|+| ++++|++|+.||.|++||+
T Consensus 259 v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~s~-dg~~l~sgs~Dg~v~iW~~ 335 (340)
T 4aow_A 259 INALCFSPNRYW-LCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQ-CTSLAWSA-DGQTLFAGYTDNLVRVWQV 335 (340)
T ss_dssp EEEEEECSSSSE-EEEEETTEEEEEETTTTEEEEEECCC-------CCCCC-EEEEEECT-TSSEEEEEETTSCEEEEEE
T ss_pred EEeeecCCCCce-eeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCC-EEEEEECC-CCCEEEEEeCCCEEEEEeC
Confidence 335678987755 56667999999999988776665431 2222 36789999 8899999999999999997
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7.8e-27 Score=153.71 Aligned_cols=145 Identities=13% Similarity=0.093 Sum_probs=114.7
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEecccccc-------ceeEeec
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFEN-------TAMIHHN 73 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~-------~~~~~~~ 73 (154)
++++.||.|++|++............+.+|.+.|.+++|+| ++++|++++.|+.|++||+.+... ...+.
T Consensus 51 ~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~-- 128 (402)
T 2aq5_A 51 CEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE-- 128 (402)
T ss_dssp BCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEE--
T ss_pred EEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEec--
Confidence 45789999999999664322111334458999999999999 999999999999999999988732 22222
Q ss_pred CCCCceEeEEEEEEcCCC-cEEEEEccCCeEEEecCCCccceeEE--eCCCcCCcceEEEecCCCccEEEEEcCCCeEEE
Q 038702 74 NQTGRWISSFRAIWGWDD-SCIFIGNMTRTVEVISPAQRRSVATL--QSPYISAIPCRFHAHPHQVGTLAGATGGGQVYV 150 (154)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~ 150 (154)
.+.. .+..++|+|++ .+|++++.|+.|++||+++++.+..+ ..|...+ .+++|+| ++.+|++++.|+.|++
T Consensus 129 -~h~~--~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v--~~~~~~~-~~~~l~~~~~d~~i~i 202 (402)
T 2aq5_A 129 -GHTK--RVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTI--YSVDWSR-DGALICTSCRDKRVRV 202 (402)
T ss_dssp -CCSS--CEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCE--EEEEECT-TSSCEEEEETTSEEEE
T ss_pred -CCCC--eEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCce--EEEEECC-CCCEEEEEecCCcEEE
Confidence 1222 24467899998 69999999999999999999998888 5444333 6889999 8899999999999999
Q ss_pred eeCC
Q 038702 151 WTSD 154 (154)
Q Consensus 151 wd~~ 154 (154)
||++
T Consensus 203 wd~~ 206 (402)
T 2aq5_A 203 IEPR 206 (402)
T ss_dssp EETT
T ss_pred EeCC
Confidence 9973
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-26 Score=148.97 Aligned_cols=144 Identities=15% Similarity=0.194 Sum_probs=109.3
Q ss_pred CeeecCCCcEEEEEccCCCCCCC--C-CceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe-ecCCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKP--E-PTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQT 76 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~--~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~ 76 (154)
|++|+.|++|++||+...+.... . ...+.+|...|.+++|+|++.++++++.|++|++||+++++....+. |..
T Consensus 42 l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~-- 119 (343)
T 2xzm_R 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQS-- 119 (343)
T ss_dssp EEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCS--
T ss_pred EEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCC--
Confidence 58999999999999976432110 0 12344899999999999999999999999999999999877654443 322
Q ss_pred CceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEe---CCCcCCcceEEEecCCC---------ccEEEEEcC
Q 038702 77 GRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQ---SPYISAIPCRFHAHPHQ---------VGTLAGATG 144 (154)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---------~~~l~~~~~ 144 (154)
.+..++|+|++++|++++.|+.|++||+... ...... .|.. . ...++|+|.. +.+|++++.
T Consensus 120 ----~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~-~-v~~~~~~~~~~~~~~~~~~~~~l~s~~~ 192 (343)
T 2xzm_R 120 ----EVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSD-W-VSCVRYSPIMKSANKVQPFAPYFASVGW 192 (343)
T ss_dssp ----CEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSS-C-EEEEEECCCCCSCSCCCSSCCEEEEEET
T ss_pred ----cEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCc-e-eeeeeeccccccccccCCCCCEEEEEcC
Confidence 2446789999999999999999999999743 222222 2222 2 3578888832 268999999
Q ss_pred CCeEEEeeC
Q 038702 145 GGQVYVWTS 153 (154)
Q Consensus 145 d~~i~~wd~ 153 (154)
|+.|++||.
T Consensus 193 d~~i~iwd~ 201 (343)
T 2xzm_R 193 DGRLKVWNT 201 (343)
T ss_dssp TSEEEEEET
T ss_pred CCEEEEEcC
Confidence 999999985
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=155.89 Aligned_cols=145 Identities=16% Similarity=0.200 Sum_probs=106.7
Q ss_pred CeeecCCCcEEEEEccCC--CCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSM--ATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (154)
|++|+.|+.|++||+.++ .. ...+.+|...|.+++|+|++++|++++.|+.|++||+.+.+..........+..
T Consensus 26 l~~~~~d~~i~iw~~~~~~~~~----~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~ 101 (377)
T 3dwl_C 26 FVTTTATNQVELYEQDGNGWKH----ARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNR 101 (377)
T ss_dssp EECCCSSSCBCEEEEETTEEEE----CCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSS
T ss_pred EEEecCCCEEEEEEccCCceEE----EEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCC
Confidence 578899999999999876 32 334458999999999999999999999999999999998761111111111222
Q ss_pred eEeEEEEEEcCCCcEEEEEccCCeEEEecCCCcc---ceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 79 WISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRR---SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.+..++|+|++++|++++.|+.|++||+++++ ....+...+...+ .+++|+| ++.+|++++.|+.|++||+
T Consensus 102 --~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v-~~~~~~~-~~~~l~~~~~d~~i~iwd~ 175 (377)
T 3dwl_C 102 --AATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTI-LSLDWHP-NNVLLAAGCADRKAYVLSA 175 (377)
T ss_dssp --CEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCE-EEEEECT-TSSEEEEEESSSCEEEEEE
T ss_pred --ceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCe-EEEEEcC-CCCEEEEEeCCCEEEEEEE
Confidence 24467899999999999999999999999877 4677776233333 6899999 8899999999999999996
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-27 Score=155.78 Aligned_cols=143 Identities=13% Similarity=0.106 Sum_probs=116.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCcee-ecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKV-LSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
|++|+.|+.|++||+..+. .... .+|.+.|.+++|+|++++|++++.|+.|++||+++.+....+.. +..
T Consensus 112 l~~~~~dg~i~iwd~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~---h~~- 182 (420)
T 3vl1_A 112 FILGTTEGDIKVLDSNFNL-----QREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIG---HRA- 182 (420)
T ss_dssp EEEEETTSCEEEECTTSCE-----EEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEEC---CSS-
T ss_pred EEEEECCCCEEEEeCCCcc-----eeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcC---CCC-
Confidence 5789999999999998665 3444 38999999999999999999999999999999998877655531 112
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCc---C-------------------CcceEEEecCCCcc
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYI---S-------------------AIPCRFHAHPHQVG 137 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~---~-------------------~~~~~~~~~~~~~~ 137 (154)
.+..++|+|++++|++++.|+.|++||+++++.+..+..+.. . .....++|+| ++.
T Consensus 183 -~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~ 260 (420)
T 3vl1_A 183 -TVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGK 260 (420)
T ss_dssp -CEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TTE
T ss_pred -cEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC-CCC
Confidence 244678999999999999999999999999998888875321 1 1113456778 788
Q ss_pred EEEEEcCCCeEEEeeCC
Q 038702 138 TLAGATGGGQVYVWTSD 154 (154)
Q Consensus 138 ~l~~~~~d~~i~~wd~~ 154 (154)
+|++++.||.|++||+.
T Consensus 261 ~l~~~~~dg~i~i~d~~ 277 (420)
T 3vl1_A 261 YVIAGHVSGVITVHNVF 277 (420)
T ss_dssp EEEEEETTSCEEEEETT
T ss_pred EEEEEcCCCeEEEEECC
Confidence 99999999999999973
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-26 Score=156.68 Aligned_cols=150 Identities=12% Similarity=0.106 Sum_probs=113.2
Q ss_pred CeeecCCCcEEEEEccCCCCC------CCCC-ceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeec
Q 038702 1 MATSSTDGTACIWDLRSMATD------KPEP-TKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHN 73 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~------~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~ 73 (154)
||+|+.||+|++||+...... ...+ ..+.+|...|++++|+|+ ..|++|+.||+|++||+++...+.....
T Consensus 228 LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~- 305 (524)
T 2j04_B 228 LSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQ- 305 (524)
T ss_dssp EEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEE-
T ss_pred EEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEee-
Confidence 578999999999999765421 0011 234489999999999986 4899999999999999997644322111
Q ss_pred CCCCceEeEEEEEEcCCC-cEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 74 NQTGRWISSFRAIWGWDD-SCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
.+...+..+...|+|++ .+|++++.|++|++||+++++++..+.++.......+++|+| ++..+++++.|++|++||
T Consensus 306 -~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp-~~~~l~s~~~d~tv~lwd 383 (524)
T 2j04_B 306 -VHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCP-QIYSYIYSDGASSLRAVP 383 (524)
T ss_dssp -CSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEET-TTTEEEEECSSSEEEEEE
T ss_pred -cccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCC-CcCeEEEeCCCCcEEEEE
Confidence 12233444433678887 899999999999999999998887776654322225689999 778899999999999999
Q ss_pred CC
Q 038702 153 SD 154 (154)
Q Consensus 153 ~~ 154 (154)
+.
T Consensus 384 ~~ 385 (524)
T 2j04_B 384 SR 385 (524)
T ss_dssp TT
T ss_pred Cc
Confidence 73
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=152.98 Aligned_cols=148 Identities=19% Similarity=0.240 Sum_probs=109.5
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCC--CCEEEEeeCCCeEEEEeccccccceeEeecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPS--GSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (154)
|++|+.|++|++||++++... ....+.+|...|.+++|+|+ +.+|++++.|++|++||++.............+..
T Consensus 74 l~s~s~D~~v~iWd~~~~~~~--~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~ 151 (316)
T 3bg1_A 74 LASCSYDRKVIIWREENGTWE--KSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTI 151 (316)
T ss_dssp EEEEETTSCEEEECCSSSCCC--EEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSS
T ss_pred EEEEECCCEEEEEECCCCcce--EEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccC
Confidence 578999999999999875321 12234489999999999997 78999999999999999987543211111111222
Q ss_pred eEeEEEEEEcCC-----------------CcEEEEEccCCeEEEecCCCc---cceeEEeCCCcCCcceEEEecCCC---
Q 038702 79 WISSFRAIWGWD-----------------DSCIFIGNMTRTVEVISPAQR---RSVATLQSPYISAIPCRFHAHPHQ--- 135 (154)
Q Consensus 79 ~~~~~~~~~~~~-----------------~~~l~~~~~d~~i~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--- 135 (154)
.+ ..+.|+|+ +.+|++++.|+.|++||++.. +.+..+.+|...+ .+++|+|..
T Consensus 152 ~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V--~~v~~sp~~~~~ 227 (316)
T 3bg1_A 152 GC--NAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWV--RDVAWAPSIGLP 227 (316)
T ss_dssp CB--CCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCE--EEEECCCCSSCS
T ss_pred Cc--ceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCce--EEEEecCCCCCC
Confidence 22 24567876 478999999999999999754 3556666665444 578999932
Q ss_pred ccEEEEEcCCCeEEEeeCC
Q 038702 136 VGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 136 ~~~l~~~~~d~~i~~wd~~ 154 (154)
+.+|++++.|++|++||++
T Consensus 228 ~~~las~s~D~~v~iw~~~ 246 (316)
T 3bg1_A 228 TSTIASCSQDGRVFIWTCD 246 (316)
T ss_dssp CCEEEEEETTCEEEEEECS
T ss_pred CceEEEEcCCCeEEEEEcc
Confidence 2789999999999999863
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=160.13 Aligned_cols=145 Identities=16% Similarity=0.188 Sum_probs=110.8
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccc-cccceeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN-FENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~-~~~~~~~~~~~~~~~~ 79 (154)
|++|+.|++|++||+..... ......+|...|.+++|+|++++|++++.|++|++|++.+ .+...... ...+..
T Consensus 463 lasgs~D~~v~lwd~~~~~~---~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~-~~~H~~- 537 (611)
T 1nr0_A 463 VAVGGQDSKVHVYKLSGASV---SEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNS-WTFHTA- 537 (611)
T ss_dssp EEEEETTSEEEEEEEETTEE---EEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCC-CCCCSS-
T ss_pred EEEeCCCCeEEEEEccCCce---eeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeee-eeeccc-
Confidence 57899999999999976431 0123358999999999999999999999999999999987 33222100 111222
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccc-e-eEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRS-V-ATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.+.+++|+|++++|++++.|++|++|++.+++. . ..+.+|....+ .+++|+| ++. |++++.|++|++||+.
T Consensus 538 -~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v-~~v~fs~-d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 538 -KVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSV-NSVIWLN-ETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp -CEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCE-EEEEEEE-TTE-EEEEETTSCEEEEECC
T ss_pred -ceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCe-eEEEEcC-CCE-EEEecCCCCEEEEecc
Confidence 345789999999999999999999999987653 3 44445523333 6889999 666 9999999999999973
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-26 Score=148.23 Aligned_cols=146 Identities=6% Similarity=-0.065 Sum_probs=111.0
Q ss_pred CeeecCCCcEEEEEccCCC----CCCCC-Cceee-cccCCeEEEEEcC--CCCEEEEeeCCCeEEEEeccccccceeEee
Q 038702 1 MATSSTDGTACIWDLRSMA----TDKPE-PTKVL-SHKRAVHSAYFSP--SGSSLATTSFDDTIGIWSGVNFENTAMIHH 72 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~----~~~~~-~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~ 72 (154)
+++|+.|++|++|+..... ..... ..... +|.++|.+++|+| +++++++++.|++|++||+++.+.......
T Consensus 88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~ 167 (343)
T 3lrv_A 88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA 167 (343)
T ss_dssp EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC
T ss_pred eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec
Confidence 4789999999999876321 00000 11222 6778999999999 999999999999999999998776443321
Q ss_pred cCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccce-eEEeC-CCcCCcceEEEecCCCccEEEEEcCCCeEEE
Q 038702 73 NNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSV-ATLQS-PYISAIPCRFHAHPHQVGTLAGATGGGQVYV 150 (154)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~ 150 (154)
. .... ...++|+|++.+|++|+.|+.|++||+++++.+ ..+.. |.. .+ ..++|+| ++.+|++++ |+.|++
T Consensus 168 ~--~~~~--i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~-~v-~~l~fs~-~g~~l~s~~-~~~v~i 239 (343)
T 3lrv_A 168 K--SDVE--YSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEA-KI-KEVKFAD-NGYWMVVEC-DQTVVC 239 (343)
T ss_dssp C--SSCC--CCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTS-CE-EEEEECT-TSSEEEEEE-SSBEEE
T ss_pred C--CCCc--eEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCC-CE-EEEEEeC-CCCEEEEEe-CCeEEE
Confidence 1 1112 336789999999999999999999999999887 77776 443 33 6899999 889999999 559999
Q ss_pred eeCC
Q 038702 151 WTSD 154 (154)
Q Consensus 151 wd~~ 154 (154)
||+.
T Consensus 240 wd~~ 243 (343)
T 3lrv_A 240 FDLR 243 (343)
T ss_dssp EETT
T ss_pred EEcC
Confidence 9974
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=148.94 Aligned_cols=149 Identities=14% Similarity=0.176 Sum_probs=112.6
Q ss_pred CeeecCCCcEEEEEccCCCCCCC----C-CceeecccCCeEEEEEcCC--CCEEEEeeCCCeEEEEeccccccceeE---
Q 038702 1 MATSSTDGTACIWDLRSMATDKP----E-PTKVLSHKRAVHSAYFSPS--GSSLATTSFDDTIGIWSGVNFENTAMI--- 70 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~----~-~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~~~~~~~~~~~~~~--- 70 (154)
|++|+.|+.|++||++.+..... . ...+.+|...|.+++|+|+ +++|++++.|+.|++||+++.+....+
T Consensus 74 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 153 (351)
T 3f3f_A 74 IASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLT 153 (351)
T ss_dssp EEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEE
T ss_pred EEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccc
Confidence 57899999999999987643110 1 2233489999999999999 999999999999999998765432110
Q ss_pred ------------------------------------------------------eecCCCCceEeEEEEEEcCCC----c
Q 038702 71 ------------------------------------------------------HHNNQTGRWISSFRAIWGWDD----S 92 (154)
Q Consensus 71 ------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~----~ 92 (154)
.....+.. .+..++|+|++ .
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~i~~~~~~p~~~~~~~ 231 (351)
T 3f3f_A 154 SEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKS--LIRSISWAPSIGRWYQ 231 (351)
T ss_dssp EEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCS--CEEEEEECCCSSCSSE
T ss_pred ccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCc--ceeEEEECCCCCCcce
Confidence 00011111 23467899998 8
Q ss_pred EEEEEccCCeEEEecCCCc----------------------------------------------cceeEEeCCCcCCcc
Q 038702 93 CIFIGNMTRTVEVISPAQR----------------------------------------------RSVATLQSPYISAIP 126 (154)
Q Consensus 93 ~l~~~~~d~~i~i~~~~~~----------------------------------------------~~~~~~~~~~~~~~~ 126 (154)
+|++++.||.|++||++.+ +.+..+.+|...+
T Consensus 232 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v-- 309 (351)
T 3f3f_A 232 LIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEV-- 309 (351)
T ss_dssp EEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCE--
T ss_pred EEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccE--
Confidence 9999999999999999864 4555566554443
Q ss_pred eEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 127 CRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 127 ~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
..++|+| ++.+|++++.||.|++||++
T Consensus 310 ~~~~~s~-~~~~l~s~~~dg~v~iw~~~ 336 (351)
T 3f3f_A 310 WSVSWNL-TGTILSSAGDDGKVRLWKAT 336 (351)
T ss_dssp EEEEECS-SSCCEEEEETTSCEEEEEEC
T ss_pred EEEEEcC-CCCEEEEecCCCcEEEEecC
Confidence 6889999 78999999999999999973
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=6e-26 Score=150.75 Aligned_cols=152 Identities=14% Similarity=0.184 Sum_probs=115.9
Q ss_pred CeeecCCCcEEEEEccCCCCCC-CCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEecc---ccccceeEe-e---
Q 038702 1 MATSSTDGTACIWDLRSMATDK-PEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV---NFENTAMIH-H--- 72 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~---~~~~~~~~~-~--- 72 (154)
|++|+.||+|++||+....... .......+|...|.+++|+|++++|++++.|+.|++||++ .++...... +
T Consensus 79 l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~ 158 (437)
T 3gre_A 79 LITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIR 158 (437)
T ss_dssp EEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeE
Confidence 5899999999999997722111 1123444799999999999999999999999999999995 332222111 0
Q ss_pred ---cCC--CCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCC-CcCCcceEEEecCCCccEEEEEcCCC
Q 038702 73 ---NNQ--TGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSP-YISAIPCRFHAHPHQVGTLAGATGGG 146 (154)
Q Consensus 73 ---~~~--~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~ 146 (154)
..+ ....+..+...+++++.++++++.|+.|++||+++++.+..+..+ +...+ .+++|+| ++.+|++|+.||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v-~~~~~s~-~~~~l~s~~~dg 236 (437)
T 3gre_A 159 KINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAV-SSICIDE-ECCVLILGTTRG 236 (437)
T ss_dssp EEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCE-EEEEECT-TSCEEEEEETTS
T ss_pred EEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCce-EEEEECC-CCCEEEEEcCCC
Confidence 011 233344444457889999999999999999999999999999874 33333 6889999 789999999999
Q ss_pred eEEEeeCC
Q 038702 147 QVYVWTSD 154 (154)
Q Consensus 147 ~i~~wd~~ 154 (154)
.|++||++
T Consensus 237 ~i~iwd~~ 244 (437)
T 3gre_A 237 IIDIWDIR 244 (437)
T ss_dssp CEEEEETT
T ss_pred eEEEEEcC
Confidence 99999974
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-26 Score=149.66 Aligned_cols=146 Identities=14% Similarity=0.101 Sum_probs=117.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeec---c---cCCeEEEEEcCCCCEEEEeeCC---CeEEEEeccccccceeEe
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLS---H---KRAVHSAYFSPSGSSLATTSFD---DTIGIWSGVNFENTAMIH 71 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~l~~~~~d---~~v~~~~~~~~~~~~~~~ 71 (154)
|++|+.|+.|++||+++.+. ...+.. | ...|.+++|+|++++|++++.| +.|++||+++.+....+.
T Consensus 200 l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~ 275 (397)
T 1sq9_A 200 IATGFNNGTVQISELSTLRP----LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLS 275 (397)
T ss_dssp EEEECTTSEEEEEETTTTEE----EEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEEC
T ss_pred EEEEeCCCcEEEEECCCCce----eEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceec
Confidence 57899999999999987653 344446 8 9999999999999999999999 999999999876655443
Q ss_pred ecCC----------CCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEe------CC--------------C
Q 038702 72 HNNQ----------TGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQ------SP--------------Y 121 (154)
Q Consensus 72 ~~~~----------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~------~~--------------~ 121 (154)
.... +.. .+..++|+|++++|++++.|+.|++||+++++.+..+. .| +
T Consensus 276 ~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 353 (397)
T 1sq9_A 276 VPTHSSQASLGEFAHSS--WVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLA 353 (397)
T ss_dssp BC--------CCBSBSS--CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCS
T ss_pred cCcccccccccccccCC--cEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhcccccccccc
Confidence 2000 122 34467899999999999999999999999999999988 55 0
Q ss_pred cCCcceEEEecCCCc----------cEEEEEcCCCeEEEeeCC
Q 038702 122 ISAIPCRFHAHPHQV----------GTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 122 ~~~~~~~~~~~~~~~----------~~l~~~~~d~~i~~wd~~ 154 (154)
... ...++|+| ++ .+|++++.||.|++||++
T Consensus 354 ~~~-v~~~~~~~-~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 354 EPG-VFDVKFLK-KGWRSGMGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp SCC-EEEEEEEC-TTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred CCc-eeEEEecc-ccccccccccccceEEEecCCCcEEEEEcC
Confidence 222 36889999 65 799999999999999973
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-26 Score=159.70 Aligned_cols=142 Identities=15% Similarity=0.205 Sum_probs=112.6
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|++|+.|++|++||++..+. ...+.+|.+.|++++|+|++++|++++.|+.|++||+++.+....+....
T Consensus 534 l~s~s~d~~v~vwd~~~~~~----~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~------ 603 (694)
T 3dm0_A 534 IVSASWDKTVKVWNLSNCKL----RSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANS------ 603 (694)
T ss_dssp EEEEETTSCEEEEETTTCCE----EEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSS------
T ss_pred EEEEeCCCeEEEEECCCCcE----EEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCC------
Confidence 47899999999999987653 33445899999999999999999999999999999999876654433221
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCc-----------------CCcceEEEecCCCccEEEEEc
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYI-----------------SAIPCRFHAHPHQVGTLAGAT 143 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~l~~~~ 143 (154)
....++|+|++.++++++ ++.|++||+++++.+..+..+.. ...+.+++|+| ++.+|++|+
T Consensus 604 ~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp-dg~~l~sgs 681 (694)
T 3dm0_A 604 VIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSA-DGSTLFSGY 681 (694)
T ss_dssp CEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECT-TSSEEEEEE
T ss_pred cEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcC-CCCEEEEEc
Confidence 234678999988887665 66799999999988777653211 11246789999 889999999
Q ss_pred CCCeEEEeeCC
Q 038702 144 GGGQVYVWTSD 154 (154)
Q Consensus 144 ~d~~i~~wd~~ 154 (154)
.||.|++||+.
T Consensus 682 ~Dg~i~iW~i~ 692 (694)
T 3dm0_A 682 TDGVIRVWGIG 692 (694)
T ss_dssp TTSEEEEEEC-
T ss_pred CCCeEEEEecc
Confidence 99999999974
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-27 Score=153.69 Aligned_cols=145 Identities=17% Similarity=0.123 Sum_probs=103.4
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEecccccc---ceeEeecCCCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN---TAMIHHNNQTG 77 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~---~~~~~~~~~~~ 77 (154)
|++|+.|+.|++||+.++.. ......+.+|...|.+++|+|++++|++++.|+.|++||+++.+. ...+.. .+.
T Consensus 70 l~s~s~d~~v~vwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~h~ 146 (377)
T 3dwl_C 70 IVTCSQDRNAYVYEKRPDGT-WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKR--PLR 146 (377)
T ss_dssp EEEEETTSSEEEC------C-CCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECS--SCC
T ss_pred EEEEeCCCeEEEEEcCCCCc-eeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeec--ccC
Confidence 57899999999999987651 111344458999999999999999999999999999999998764 222221 122
Q ss_pred ceEeEEEEEEcCCCcEEEEEccCCeEEEecCC------------------CccceeEEeCCCcCCcceEEEecCCCccEE
Q 038702 78 RWISSFRAIWGWDDSCIFIGNMTRTVEVISPA------------------QRRSVATLQSPYISAIPCRFHAHPHQVGTL 139 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 139 (154)
. .+..++|+|++++|++++.|+.|++||++ .++++..+ .|... + ..++|+| ++.+|
T Consensus 147 ~--~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-v-~~~~~sp-~~~~l 220 (377)
T 3dwl_C 147 S--TILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGW-V-HAVGFSP-SGNAL 220 (377)
T ss_dssp S--CEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSS-E-EEEEECT-TSSCE
T ss_pred C--CeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCce-E-EEEEECC-CCCEE
Confidence 2 34467899999999999999999999985 24444445 34333 3 6789999 88999
Q ss_pred EEEcCCCeEEEeeCC
Q 038702 140 AGATGGGQVYVWTSD 154 (154)
Q Consensus 140 ~~~~~d~~i~~wd~~ 154 (154)
++++.|+.|++||++
T Consensus 221 ~~~~~d~~i~iwd~~ 235 (377)
T 3dwl_C 221 AYAGHDSSVTIAYPS 235 (377)
T ss_dssp EEEETTTEEC-CEEC
T ss_pred EEEeCCCcEEEEECC
Confidence 999999999999973
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-26 Score=147.67 Aligned_cols=142 Identities=7% Similarity=0.014 Sum_probs=109.4
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee--cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccc-eeEeecCCCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL--SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT-AMIHHNNQTG 77 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~-~~~~~~~~~~ 77 (154)
+++|+.|++|++||+++++ ..... .|...+.+++|+|++.+|++|+.|+.|++||+++.+.. ..+.. .+.
T Consensus 142 l~s~s~dg~i~~wd~~~~~-----~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~--~h~ 214 (343)
T 3lrv_A 142 FIWADNRGTIGFQSYEDDS-----QYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV--DEE 214 (343)
T ss_dssp EEEEETTCCEEEEESSSSC-----EEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCC--CTT
T ss_pred EEEEeCCCcEEEEECCCCc-----EEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEec--cCC
Confidence 4789999999999998765 33333 45668999999999999999999999999999988766 33322 122
Q ss_pred ceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCC---CcCCcceEEEecCCCccEEEEEcC-CCeEEEeeC
Q 038702 78 RWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSP---YISAIPCRFHAHPHQVGTLAGATG-GGQVYVWTS 153 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~~wd~ 153 (154)
. .+..++|+|++.+|++++ ++.|++||+++++.+..+... ........++|+| ++.+|++++. |+.+++|++
T Consensus 215 ~--~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~s~~d~~i~v~~~ 290 (343)
T 3lrv_A 215 A--KIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD-SGKNMIAYSNESNSLTIYKF 290 (343)
T ss_dssp S--CEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred C--CEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECC-CCCEEEEecCCCCcEEEEEE
Confidence 2 344678999999999999 559999999998876655431 1111113589999 8899999888 999999986
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.3e-26 Score=148.42 Aligned_cols=142 Identities=11% Similarity=0.114 Sum_probs=113.3
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCcee--ecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEeecCCCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKV--LSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTG 77 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~ 77 (154)
|++|+.|+.|++||+.+... .... .+|...|.+++|+| ++++|++++.|+.|++||+++........+. ...
T Consensus 89 l~s~~~dg~i~iwd~~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~ 163 (383)
T 3ei3_B 89 VAVGSKGGDIILWDYDVQNK----TSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTD-SWD 163 (383)
T ss_dssp EEEEEBTSCEEEEETTSTTC----EEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCC-CSS
T ss_pred EEEEcCCCeEEEEeCCCccc----ceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccC-CCC
Confidence 57899999999999987653 2222 26999999999999 7899999999999999999864333332222 122
Q ss_pred ceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCcc-EEEEEcCCCeEEEeeC
Q 038702 78 RWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVG-TLAGATGGGQVYVWTS 153 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~~wd~ 153 (154)
. .+..++|+|++++|++++.|+.|++||+ +++.+..+..|...+ .+++|+| ++. +|++++.|+.|++||+
T Consensus 164 ~--~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v--~~~~~~~-~~~~~l~s~~~d~~i~iwd~ 234 (383)
T 3ei3_B 164 Y--WYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKV--THAEFNP-RCDWLMATSSVDATVKLWDL 234 (383)
T ss_dssp C--CEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCE--EEEEECS-SCTTEEEEEETTSEEEEEEG
T ss_pred C--CeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcE--EEEEECC-CCCCEEEEEeCCCEEEEEeC
Confidence 2 2346789999999999999999999999 577788888766544 5789999 556 9999999999999997
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.8e-27 Score=153.79 Aligned_cols=145 Identities=10% Similarity=0.058 Sum_probs=106.8
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCc-eeecccCCeEEEEEcC--------CCCEEEEeeCCCeEEEEecccccccee-E
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPT-KVLSHKRAVHSAYFSP--------SGSSLATTSFDDTIGIWSGVNFENTAM-I 70 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~--------~~~~l~~~~~d~~v~~~~~~~~~~~~~-~ 70 (154)
|++|+.|++|++||.+.+........ .+.+|.+.|.+++|+| ++++|++++.|++|++||+++...... .
T Consensus 104 las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~ 183 (393)
T 4gq1_A 104 LACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGY 183 (393)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEE
T ss_pred EEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeec
Confidence 57899999999999987643111111 1238999999999998 788999999999999999987655433 3
Q ss_pred eecCCCCceEeEEEEEEcCCCc-EEEEEccCCeEEEecCCCccceeEEe-------------------------CCCcCC
Q 038702 71 HHNNQTGRWISSFRAIWGWDDS-CIFIGNMTRTVEVISPAQRRSVATLQ-------------------------SPYISA 124 (154)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~i~~~~~~~~~~~~~-------------------------~~~~~~ 124 (154)
.+.. ....++|+|++. +|++++.|++|++||+++++...... ++....
T Consensus 184 ~~~~------~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v 257 (393)
T 4gq1_A 184 PLSS------PGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSL 257 (393)
T ss_dssp ECSS------CEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSC
T ss_pred CCCC------CcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccc
Confidence 3332 234789999874 89999999999999999876543332 111122
Q ss_pred cceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 125 IPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 125 ~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
..+.|.+.++..|++++.|+++++||+
T Consensus 258 --~~v~~~~~dg~~l~s~s~d~~i~vwd~ 284 (393)
T 4gq1_A 258 --ANVRWIGSDGSGILAMCKSGAWLRWNL 284 (393)
T ss_dssp --SEEEEETTTTCEEEEECTTSEEEEEEC
T ss_pred --eeeeeecCCCCEEEEEeCCCCEEEEEC
Confidence 356776558899999999999999997
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-25 Score=144.06 Aligned_cols=149 Identities=17% Similarity=0.242 Sum_probs=112.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCce-eecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEee-------
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTK-VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHH------- 72 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~------- 72 (154)
|+||+.|++|++||+...+.....+.. +.+|...|.+++|+|++++|++++.|+.|++|+............
T Consensus 54 l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~ 133 (340)
T 4aow_A 54 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLS 133 (340)
T ss_dssp EEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE
T ss_pred EEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeE
Confidence 579999999999999876542222222 348999999999999999999999999999999875432211100
Q ss_pred ---------------------------------cCCCCceEeEEEEEEcCC--CcEEEEEccCCeEEEecCCCccceeEE
Q 038702 73 ---------------------------------NNQTGRWISSFRAIWGWD--DSCIFIGNMTRTVEVISPAQRRSVATL 117 (154)
Q Consensus 73 ---------------------------------~~~~~~~~~~~~~~~~~~--~~~l~~~~~d~~i~i~~~~~~~~~~~~ 117 (154)
...+...+ ..++|+++ ..++++++.|+.|++||+++++.+..+
T Consensus 134 ~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~ 211 (340)
T 4aow_A 134 VAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWV--SCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH 211 (340)
T ss_dssp EEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCE--EEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred EEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcc--cceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEe
Confidence 00111112 23456665 457889999999999999999998888
Q ss_pred eCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 118 QSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.+|...+ .+++|+| ++++|++|+.|+.|++||+.
T Consensus 212 ~~h~~~v--~~~~~s~-~~~~l~s~s~Dg~i~iwd~~ 245 (340)
T 4aow_A 212 IGHTGYL--NTVTVSP-DGSLCASGGKDGQAMLWDLN 245 (340)
T ss_dssp CCCSSCE--EEEEECT-TSSEEEEEETTCEEEEEETT
T ss_pred cCCCCcE--EEEEECC-CCCEEEEEeCCCeEEEEEec
Confidence 8766544 5789999 88999999999999999974
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.95 E-value=9.3e-26 Score=149.44 Aligned_cols=144 Identities=17% Similarity=0.243 Sum_probs=116.4
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCC-CEEEE--eeCCCeEEEEeccccccceeEeecCCCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSG-SSLAT--TSFDDTIGIWSGVNFENTAMIHHNNQTG 77 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~--~~~d~~v~~~~~~~~~~~~~~~~~~~~~ 77 (154)
+++++.|+.+++|+...++...........|...|.+++|+|.+ ..+++ |+.|++|++||+.++.....+....
T Consensus 245 l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~--- 321 (420)
T 4gga_A 245 LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS--- 321 (420)
T ss_dssp EEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS---
T ss_pred eeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc---
Confidence 47899999999999987664333344455899999999999965 45554 4579999999999887766554432
Q ss_pred ceEeEEEEEEcCCCcEEEEEc--cCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 78 RWISSFRAIWGWDDSCIFIGN--MTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~--~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
....+.|+|++..+++++ .|+.|++||+.+++++.++.+|...+ .+++|+| ++.+|++|+.|++|++||+
T Consensus 322 ---~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V--~~l~~sp-dg~~l~S~s~D~tvriWdv 393 (420)
T 4gga_A 322 ---QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRV--LSLTMSP-DGATVASAAADETLRLWRC 393 (420)
T ss_dssp ---CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCE--EEEEECT-TSSCEEEEETTTEEEEECC
T ss_pred ---ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCE--EEEEEcC-CCCEEEEEecCCeEEEEEC
Confidence 234668999998887754 78999999999999999999876554 5789999 8899999999999999997
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.8e-26 Score=154.32 Aligned_cols=138 Identities=22% Similarity=0.304 Sum_probs=112.6
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|++++.|+.|++||... +. ...+.+|...|.+++|+|++++|++++.|+.|++||...........+..
T Consensus 400 l~~~~~d~~v~~~~~~~-~~----~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~------ 468 (577)
T 2ymu_A 400 IASASDDKTVKLWNRNG-QL----LQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSS------ 468 (577)
T ss_dssp EEEEETTSEEEEECTTC-CE----EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSS------
T ss_pred EEEEeCCCEEEEEeCCC-CE----EEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCC------
Confidence 47899999999999643 21 44455899999999999999999999999999999975433323322322
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
....++|+|++++|++++.|+.|++||. +++.+..+.+|...+ .+++|+| ++++|++++.|+.|++||.
T Consensus 469 ~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v--~~l~~s~-dg~~l~s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 469 SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV--RGVAFSP-DGQTIASASDDKTVKLWNR 537 (577)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCE--EEEEECT-TSSCEEEEETTSEEEEECT
T ss_pred CEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCE--EEEEEcC-CCCEEEEEECcCEEEEEeC
Confidence 2346789999999999999999999995 678888898776554 5789999 8899999999999999996
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.5e-26 Score=148.04 Aligned_cols=149 Identities=27% Similarity=0.391 Sum_probs=113.6
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEe-ecCCC--
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQT-- 76 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~-- 76 (154)
|++|+.|+.|++||+++.+... ......+|...|.+++|+| ++++|++++.|+.|++||+++.+....+. +....
T Consensus 220 l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 298 (383)
T 3ei3_B 220 MATSSVDATVKLWDLRNIKDKN-SYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQ 298 (383)
T ss_dssp EEEEETTSEEEEEEGGGCCSTT-CEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCT
T ss_pred EEEEeCCCEEEEEeCCCCCccc-ceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccc
Confidence 5789999999999998744211 1444558999999999999 99999999999999999999877654332 22110
Q ss_pred -CceE--------eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCe
Q 038702 77 -GRWI--------SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQ 147 (154)
Q Consensus 77 -~~~~--------~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 147 (154)
...+ ..+.++|+|++++ +++.|+.|++||+.+++.+..+.++........++|+| ++.+|++++ |+.
T Consensus 299 ~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~-~g~~l~s~s-d~~ 374 (383)
T 3ei3_B 299 HLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSP-TGDVLASGM-GFN 374 (383)
T ss_dssp TSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECT-TSSEEEEEE-TTE
T ss_pred cccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEec-CccEEEEec-CCc
Confidence 0001 1223556777766 77899999999999999999998765344435679999 889999997 999
Q ss_pred EEEeeCC
Q 038702 148 VYVWTSD 154 (154)
Q Consensus 148 i~~wd~~ 154 (154)
|++||++
T Consensus 375 i~iw~~~ 381 (383)
T 3ei3_B 375 ILIWNRE 381 (383)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 9999985
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=160.61 Aligned_cols=147 Identities=10% Similarity=0.005 Sum_probs=108.9
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCcee-------ecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccc------
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKV-------LSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT------ 67 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~------ 67 (154)
|++|+.|++|++||+..+.......... .+|...|.+++|+|++++|++|+.||+|++|++.+.+..
T Consensus 450 laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~ 529 (902)
T 2oaj_A 450 FITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRP 529 (902)
T ss_dssp EEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC-------
T ss_pred EEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccC
Confidence 5899999999999998764311111111 178899999999999999999999999999999865310
Q ss_pred ------------------------------------eeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCc
Q 038702 68 ------------------------------------AMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQR 111 (154)
Q Consensus 68 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~ 111 (154)
........+... +..++|+|+| +|++|+.|++|++||++++
T Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~--V~svafSpdG-~lAsgs~D~tv~lwd~~~~ 606 (902)
T 2oaj_A 530 ESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGK--TSAINNSNIG-FVGIAYAAGSLMLIDRRGP 606 (902)
T ss_dssp --------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCS--EEEEEECBTS-EEEEEETTSEEEEEETTTT
T ss_pred CCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCc--EEEEEecCCc-EEEEEeCCCcEEEEECCCC
Confidence 001111112223 3467899999 9999999999999999887
Q ss_pred cceeE--E---e-CCCcCCcceEEEec-----CCC---ccEEEEEcCCCeEEEeeC
Q 038702 112 RSVAT--L---Q-SPYISAIPCRFHAH-----PHQ---VGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 112 ~~~~~--~---~-~~~~~~~~~~~~~~-----~~~---~~~l~~~~~d~~i~~wd~ 153 (154)
..+.. + . +|...+ .+++|+ | + +.+|++|+.|++|++||+
T Consensus 607 ~~~~~~~~~~~~~gh~~~V--~sv~Fs~~~~~~-Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 607 AIIYMENIREISGAQSACV--TCIEFVIMEYGD-DGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp EEEEEEEGGGTCSSCCCCE--EEEEEEEEECTT-SSSEEEEEEEEETTSEEEEEEE
T ss_pred eEEEEeehhHhccccccce--EEEEEEEEecCC-CCCcceEEEEEecCCcEEEEEE
Confidence 66542 2 1 333333 678999 7 4 489999999999999997
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-26 Score=152.89 Aligned_cols=144 Identities=9% Similarity=0.042 Sum_probs=112.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeec--ccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLS--HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (154)
|++|+.|+.|++||+++.+. ...+.+ |.+.|.+++|+|++++|++++.||.|++||+++.+....+... +..
T Consensus 185 l~~~~~d~~i~iwd~~~~~~----~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~ 258 (437)
T 3gre_A 185 LVALTNLSRVIIFDIRTLER----LQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFG--DHA 258 (437)
T ss_dssp EEEEETTSEEEEEETTTCCE----EEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCT--TCE
T ss_pred EEEEeCCCeEEEEeCCCCee----eEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecC--CCC
Confidence 57899999999999988663 344445 8999999999999999999999999999999986655444321 111
Q ss_pred eEeEEEEEE----cCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCC------------------------cceEEE
Q 038702 79 WISSFRAIW----GWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISA------------------------IPCRFH 130 (154)
Q Consensus 79 ~~~~~~~~~----~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~------------------------~~~~~~ 130 (154)
.+..++| ++++.+|++++.|+.|++||+++++.+..+.++.... ...+++
T Consensus 259 --~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~ 336 (437)
T 3gre_A 259 --PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTIS 336 (437)
T ss_dssp --EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEE
T ss_pred --ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEE
Confidence 2335544 4568899999999999999999999888887553111 124567
Q ss_pred ecCCCccEEEEEcCCCeEEEeeCC
Q 038702 131 AHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 131 ~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
+++ +.+|++|+.|+.|++||++
T Consensus 337 ~~~--~~~l~s~~~d~~i~~wd~~ 358 (437)
T 3gre_A 337 VSN--DKILLTDEATSSIVMFSLN 358 (437)
T ss_dssp EET--TEEEEEEGGGTEEEEEETT
T ss_pred ECC--ceEEEecCCCCeEEEEECC
Confidence 773 4899999999999999974
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-25 Score=143.42 Aligned_cols=142 Identities=13% Similarity=0.114 Sum_probs=119.4
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|++++.||.|++||+++... ....+..|...|.+++|+|++++|++++.|+.|++||+++.+....+.+..
T Consensus 190 l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~------ 260 (369)
T 3zwl_B 190 IIAGHKDGKISKYDVSNNYE---YVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDC------ 260 (369)
T ss_dssp EEEEETTSEEEEEETTTTTE---EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS------
T ss_pred EEEEcCCCEEEEEECCCCcE---eEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCC------
Confidence 47889999999999987322 033444799999999999999999999999999999999887766655322
Q ss_pred eEEEEEEcCCCcEEEEEccCC--------------eEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTR--------------TVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGG 146 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~--------------~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 146 (154)
....++|+|+++++++++.++ .+++||..+++.+..+.+|...+ ..++|+| ++++|++++.||
T Consensus 261 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v--~~~~~s~-~~~~l~s~~~dg 337 (369)
T 3zwl_B 261 PLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPL--NTVAISP-QGTSYASGGEDG 337 (369)
T ss_dssp CEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCE--EEEEECT-TSSEEEEEETTS
T ss_pred CceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcE--EEEEECC-CCCEEEEEcCCC
Confidence 234678999999999999888 89999999999999998776554 5789999 889999999999
Q ss_pred eEEEeeCC
Q 038702 147 QVYVWTSD 154 (154)
Q Consensus 147 ~i~~wd~~ 154 (154)
.|++||++
T Consensus 338 ~v~iw~~~ 345 (369)
T 3zwl_B 338 FIRLHHFE 345 (369)
T ss_dssp EEEEEEEC
T ss_pred eEEEEECc
Confidence 99999974
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-25 Score=141.95 Aligned_cols=144 Identities=15% Similarity=0.226 Sum_probs=114.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCE---EEEeeCCCeEEEEeccccccceeEeecCCCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSS---LATTSFDDTIGIWSGVNFENTAMIHHNNQTG 77 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~ 77 (154)
|++++.|+.|++||+++++...........|.+.|.++.++|.+.. +++++.++.|++||.+.........+..
T Consensus 165 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~--- 241 (318)
T 4ggc_A 165 LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS--- 241 (318)
T ss_dssp EEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSS---
T ss_pred EEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccccee---
Confidence 4789999999999998866433334444578899999999996653 3466789999999998877655544433
Q ss_pred ceEeEEEEEEcCCCcEEEEEc--cCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 78 RWISSFRAIWGWDDSCIFIGN--MTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~--~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
....+.|+|++..+++++ .|+.|++||+++++++.++.+|...+ .+++|+| ++.+|++|+.||+|++||+
T Consensus 242 ---~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V--~~l~~sp-dg~~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 242 ---QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRV--LSLTMSP-DGATVASAAADETLRLWRC 313 (318)
T ss_dssp ---CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCE--EEEEECT-TSSCEEEEETTTEEEEECC
T ss_pred ---eeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCE--EEEEEcC-CCCEEEEEecCCeEEEEEC
Confidence 233567899888776654 79999999999999999999876554 5789999 8899999999999999997
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-25 Score=143.86 Aligned_cols=109 Identities=18% Similarity=0.317 Sum_probs=87.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCC-ceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEP-TKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
|++|+.||.|++||+.+... .. ..+.+|...|.+++|+|++++|++++.|+.|++||+++.+......+.. .
T Consensus 57 l~~~~~dg~i~iw~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~----~ 129 (368)
T 3mmy_A 57 LIAGSWANDVRCWEVQDSGQ---TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDA----P 129 (368)
T ss_dssp EEEEETTSEEEEEEECTTSC---EEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS----C
T ss_pred EEEECCCCcEEEEEcCCCCc---eeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccC----c
Confidence 57899999999999987332 02 3444899999999999999999999999999999999887666554433 2
Q ss_pred EeEEEEEE--cCCCcEEEEEccCCeEEEecCCCccceeEEe
Q 038702 80 ISSFRAIW--GWDDSCIFIGNMTRTVEVISPAQRRSVATLQ 118 (154)
Q Consensus 80 ~~~~~~~~--~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 118 (154)
+ ..++| +|++.++++++.|+.|++||+++++.+..+.
T Consensus 130 v--~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 168 (368)
T 3mmy_A 130 V--KTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ 168 (368)
T ss_dssp E--EEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEE
T ss_pred e--EEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEe
Confidence 3 35567 8999999999999999999998776554443
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-25 Score=143.78 Aligned_cols=148 Identities=13% Similarity=0.169 Sum_probs=109.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC--CCCEEEEeeCCCeEEEEeccccccc------eeEee
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP--SGSSLATTSFDDTIGIWSGVNFENT------AMIHH 72 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~~~~~~~~~~~------~~~~~ 72 (154)
|++|+.||.|++||+............+.+|...|.+++|+| ++++|++++.|+.|++||+++.... .....
T Consensus 26 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~ 105 (351)
T 3f3f_A 26 VATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCT 105 (351)
T ss_dssp EEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEE
T ss_pred EEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeee
Confidence 578999999999999875431111233348999999999999 6999999999999999999876421 11111
Q ss_pred cCCCCceEeEEEEEEcCC--CcEEEEEccCCeEEEecCCCccce------------------------------------
Q 038702 73 NNQTGRWISSFRAIWGWD--DSCIFIGNMTRTVEVISPAQRRSV------------------------------------ 114 (154)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~--~~~l~~~~~d~~i~i~~~~~~~~~------------------------------------ 114 (154)
...+.. .+..++|+|+ +.++++++.|+.|++||+++++.+
T Consensus 106 ~~~~~~--~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 183 (351)
T 3f3f_A 106 LNDSKG--SLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPE 183 (351)
T ss_dssp ECCCSS--CEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCC
T ss_pred ecccCC--ceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCc
Confidence 112222 2346789999 999999999999999998765432
Q ss_pred ------------------------eEEeCCCcCCcceEEEecCCCc----cEEEEEcCCCeEEEeeC
Q 038702 115 ------------------------ATLQSPYISAIPCRFHAHPHQV----GTLAGATGGGQVYVWTS 153 (154)
Q Consensus 115 ------------------------~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~d~~i~~wd~ 153 (154)
..+.+|.. . ...++|+| ++ .+|++++.||.|++||+
T Consensus 184 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~-i~~~~~~p-~~~~~~~~l~s~~~dg~i~iwd~ 247 (351)
T 3f3f_A 184 KLAVSALEQAIIYQRGKDGKLHVAAKLPGHKS-L-IRSISWAP-SIGRWYQLIATGCKDGRIRIFKI 247 (351)
T ss_dssp EEEEEETTEEEEEEECTTSCEEEEEECCCCCS-C-EEEEEECC-CSSCSSEEEEEEETTSCEEEEEE
T ss_pred EEEEecCCCcEEEEccCCCceeeeeecCCCCc-c-eeEEEECC-CCCCcceEEEEEcCCCeEEEEeC
Confidence 12222222 2 26789999 55 79999999999999996
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.94 E-value=8.7e-25 Score=140.30 Aligned_cols=146 Identities=14% Similarity=0.178 Sum_probs=114.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee--cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL--SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (154)
|++++ ||.|++||+........ ..... +|...|.+++|+|+++++++++.|+.|++||+++.+......... +..
T Consensus 66 l~~~~-dg~i~iw~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~~ 142 (337)
T 1gxr_A 66 VYTGG-KGCVKVWDISHPGNKSP-VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTS-SAP 142 (337)
T ss_dssp EEEEC-BSEEEEEETTSTTCCSC-SEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEEC-SSS
T ss_pred EEEcC-CCeEEEEECCCCCceee-eecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeeccc-CCC
Confidence 35666 99999999987653221 22222 789999999999999999999999999999998876432222111 111
Q ss_pred eEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 79 WISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
....++|+|+++++++++.|+.|++||+++++.+..+..|.... ..++|+| ++.+|++++.|+.|++||++
T Consensus 143 --~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i--~~~~~~~-~~~~l~~~~~dg~i~~~d~~ 213 (337)
T 1gxr_A 143 --ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA--SCIDISN-DGTKLWTGGLDNTVRSWDLR 213 (337)
T ss_dssp --CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE--EEEEECT-TSSEEEEEETTSEEEEEETT
T ss_pred --ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCce--EEEEECC-CCCEEEEEecCCcEEEEECC
Confidence 23467899999999999999999999999999888888665443 5789999 78999999999999999973
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-25 Score=147.37 Aligned_cols=143 Identities=17% Similarity=0.131 Sum_probs=118.6
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|++++.|+.|++||++..+. ...+.+|...|.+++|+|++ .+++++.|+.|++||+++.+....+... ..
T Consensus 262 l~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~-- 331 (425)
T 1r5m_A 262 LLSASDDGTLRIWHGGNGNS----QNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVD---GV-- 331 (425)
T ss_dssp EEEEETTSCEEEECSSSBSC----SEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECT---TC--
T ss_pred EEEEcCCCEEEEEECCCCcc----ceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccC---Cc--
Confidence 57899999999999988764 44455899999999999999 9999999999999999887765544321 11
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCcc--------------------ceeEEeCCCcCCcceEEEecCCCccEEE
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRR--------------------SVATLQSPYISAIPCRFHAHPHQVGTLA 140 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 140 (154)
....++|+|++++|++++.||.|++||+++++ .+..+..+........++|+| ++.+|+
T Consensus 332 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~ 410 (425)
T 1r5m_A 332 PIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNC-AGNKIS 410 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECT-TSSEEE
T ss_pred cEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccC-CCceEE
Confidence 23467899999999999999999999999888 788888765531337899999 788999
Q ss_pred EEcCCCeEEEeeCC
Q 038702 141 GATGGGQVYVWTSD 154 (154)
Q Consensus 141 ~~~~d~~i~~wd~~ 154 (154)
+++.||.|++||++
T Consensus 411 ~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 411 VAYSLQEGSVVAIP 424 (425)
T ss_dssp EEESSSCCEEEECC
T ss_pred EEecCceEEEEeec
Confidence 99999999999984
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.4e-26 Score=146.66 Aligned_cols=144 Identities=13% Similarity=0.084 Sum_probs=113.6
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC---CCCEEEEeeCCCeEEEEeccccccceeEe--ecCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP---SGSSLATTSFDDTIGIWSGVNFENTAMIH--HNNQ 75 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~v~~~~~~~~~~~~~~~--~~~~ 75 (154)
|++++.|+.|++||++..+ ......|...|.+++|+| +++.+++++.|+.|++||+++.+....+. ....
T Consensus 183 l~~~~~d~~i~i~d~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 257 (357)
T 3i2n_A 183 VCAGYDNGDIKLFDLRNMA-----LRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKA 257 (357)
T ss_dssp EEEEETTSEEEEEETTTTE-----EEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEEC
T ss_pred EEEEccCCeEEEEECccCc-----eeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCC
Confidence 4788999999999998765 445568999999999999 89999999999999999999876654432 1111
Q ss_pred CCceEeEEEEEEcCCCc-EEEEEccCCeEEEecCCCc-------------------cceeEEeCCCcCCcceEEEecCCC
Q 038702 76 TGRWISSFRAIWGWDDS-CIFIGNMTRTVEVISPAQR-------------------RSVATLQSPYISAIPCRFHAHPHQ 135 (154)
Q Consensus 76 ~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~i~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~ 135 (154)
+.. .+..++|+|++. ++++++.||.|++||++.+ +.+..+..|...+ ..++|+| +
T Consensus 258 ~~~--~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v--~~~~~s~-~ 332 (357)
T 3i2n_A 258 HKS--TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPI--SSLDWSP-D 332 (357)
T ss_dssp CSS--CEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCE--EEEEECS-S
T ss_pred CcC--CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCe--eEEEEcC-C
Confidence 222 344678999998 8999999999999998754 3455566554443 6789999 6
Q ss_pred ccEEE-EEcCCCeEEEeeCC
Q 038702 136 VGTLA-GATGGGQVYVWTSD 154 (154)
Q Consensus 136 ~~~l~-~~~~d~~i~~wd~~ 154 (154)
+.+|+ +++.|+.|++||+.
T Consensus 333 ~~~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 333 KRGLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp STTEEEEEETTSEEEEEEEC
T ss_pred CCeEEEEecCCCcEEEEECC
Confidence 67776 89999999999973
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.3e-26 Score=150.88 Aligned_cols=151 Identities=28% Similarity=0.443 Sum_probs=113.3
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE-eecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI-HHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~-~~~~~~~~~ 79 (154)
|++|+.|+.|++||++...... ......+|...|++++|+|++++|++++.|+.|++||+.+....... .+.......
T Consensus 266 ~~s~s~d~~v~iwd~~~~~~~~-~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~ 344 (435)
T 4e54_B 266 LATASVDQTVKIWDLRQVRGKA-SFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQH 344 (435)
T ss_dssp EEEEETTSBCCEEETTTCCSSS-CCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSS
T ss_pred EEEecCcceeeEEecccccccc-eEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccccccc
Confidence 4689999999999998765321 12334589999999999999999999999999999999987765433 233333333
Q ss_pred EeEEEEEEcCCCcEEEEEc------------cCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCe
Q 038702 80 ISSFRAIWGWDDSCIFIGN------------MTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQ 147 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~------------~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 147 (154)
...+...|+|++.++++++ .++.|++||..+++.+..+..++...+....+|+| ++.+|++|+ |+.
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fsp-dg~~lasg~-d~~ 422 (435)
T 4e54_B 345 LTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNP-MGDTLASAM-GYH 422 (435)
T ss_dssp SCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECT-TSSCEEEEC-SSE
T ss_pred ceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECC-CCCEEEEEc-CCc
Confidence 3344556777777766654 34579999999999998887666555534457999 888898876 889
Q ss_pred EEEeeCC
Q 038702 148 VYVWTSD 154 (154)
Q Consensus 148 i~~wd~~ 154 (154)
|++||++
T Consensus 423 i~iW~~~ 429 (435)
T 4e54_B 423 ILIWSQQ 429 (435)
T ss_dssp EEECCCC
T ss_pred EEEEECC
Confidence 9999974
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-25 Score=144.45 Aligned_cols=146 Identities=19% Similarity=0.214 Sum_probs=113.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCC--CCEEEEeeCCCeEEEEeccccccceeEeecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPS--GSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (154)
|++|+.||.|++||+.+++.. .......|...|.+++|+|+ +++|++++.|+.|++||++............ +..
T Consensus 72 l~s~~~dg~v~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-~~~ 148 (379)
T 3jrp_A 72 LASCSYDGKVLIWKEENGRWS--QIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA-HAI 148 (379)
T ss_dssp EEEEETTSCEEEEEEETTEEE--EEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEEC-CTT
T ss_pred EEEeccCCEEEEEEcCCCcee--EeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecC-CCC
Confidence 578999999999999876410 03344479999999999998 9999999999999999998875443322111 122
Q ss_pred eEeEEEEEEcC-------------CCcEEEEEccCCeEEEecCCCccc----eeEEeCCCcCCcceEEEecCCC---ccE
Q 038702 79 WISSFRAIWGW-------------DDSCIFIGNMTRTVEVISPAQRRS----VATLQSPYISAIPCRFHAHPHQ---VGT 138 (154)
Q Consensus 79 ~~~~~~~~~~~-------------~~~~l~~~~~d~~i~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~---~~~ 138 (154)
.+..++|+| ++.++++++.|+.|++||+++++. ...+.+|...+ .+++|+| + +.+
T Consensus 149 --~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v--~~~~~sp-~~~~~~~ 223 (379)
T 3jrp_A 149 --GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV--RDVAWSP-TVLLRSY 223 (379)
T ss_dssp --CEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE--EEEEECC-CCSSSEE
T ss_pred --ceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcE--eEEEECC-CCCCCCe
Confidence 234678999 699999999999999999987653 34555554433 6889999 6 899
Q ss_pred EEEEcCCCeEEEeeCC
Q 038702 139 LAGATGGGQVYVWTSD 154 (154)
Q Consensus 139 l~~~~~d~~i~~wd~~ 154 (154)
|++++.||.|++||++
T Consensus 224 l~s~~~dg~i~iwd~~ 239 (379)
T 3jrp_A 224 LASVSQDRTCIIWTQD 239 (379)
T ss_dssp EEEEETTSCEEEEEES
T ss_pred EEEEeCCCEEEEEeCC
Confidence 9999999999999963
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=146.04 Aligned_cols=142 Identities=13% Similarity=0.150 Sum_probs=112.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
|++|+.||.|++||+.+++. ...+.+|...|.+++|+| ++++|++++.|+.|++||+++.+....+.....+..
T Consensus 88 l~~~~~dg~i~v~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~- 162 (366)
T 3k26_A 88 LAVAGSRGIIRIINPITMQC----IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD- 162 (366)
T ss_dssp EEEEETTCEEEEECTTTCCE----EEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSS-
T ss_pred EEEecCCCEEEEEEchhceE----eeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccC-
Confidence 57899999999999987663 444558999999999999 999999999999999999998876655532122222
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeC----------------------------CCcCCcceEEEe
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQS----------------------------PYISAIPCRFHA 131 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~ 131 (154)
.+..++|+|++.+|++++.|+.|++||+++++.+..+.. |...+ .+++|
T Consensus 163 -~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~ 239 (366)
T 3k26_A 163 -EVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYV--DCVRW 239 (366)
T ss_dssp -CEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCC--CEEEE
T ss_pred -ceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceE--EEEEE
Confidence 344678999999999999999999999998765544332 43333 46777
Q ss_pred cCCCccEEEEEcCCCeEEEeeC
Q 038702 132 HPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 132 ~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+ ++++++++.|+.|++||+
T Consensus 240 ~---~~~l~~~~~d~~i~~wd~ 258 (366)
T 3k26_A 240 L---GDLILSKSCENAIVCWKP 258 (366)
T ss_dssp E---TTEEEEECSSSEEEEEEE
T ss_pred c---CCEEEEEecCCEEEEEeC
Confidence 6 469999999999999996
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.94 E-value=8.5e-25 Score=140.36 Aligned_cols=140 Identities=14% Similarity=0.184 Sum_probs=115.9
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|++++.|+.|++||+++++. ...+..|...|.+++|+|++++|++++.|+.|++||+++.+......+..
T Consensus 156 l~~~~~dg~v~~~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~------ 225 (337)
T 1gxr_A 156 CFSCCSDGNIAVWDLHNQTL----VRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTS------ 225 (337)
T ss_dssp EEEEETTSCEEEEETTTTEE----EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS------
T ss_pred EEEEeCCCcEEEEeCCCCce----eeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCC------
Confidence 47899999999999987653 34444799999999999999999999999999999999887665554332
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
....++|+|+++++++++.++.|++||+++++.. .+..|...+ ..++|+| ++++|++++.||.|++||++
T Consensus 226 ~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v--~~~~~~~-~~~~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCV--LSLKFAY-CGKWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCE--EEEEECT-TSSEEEEEETTSEEEEEETT
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccce--eEEEECC-CCCEEEEecCCCcEEEEECC
Confidence 2346789999999999999999999999988754 454444333 6889999 88999999999999999973
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-25 Score=147.16 Aligned_cols=147 Identities=11% Similarity=0.091 Sum_probs=111.6
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCce--------eecccCCeEEEEEcCCC-CEEEEeeCCCeEEEEecccccc----c
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTK--------VLSHKRAVHSAYFSPSG-SSLATTSFDDTIGIWSGVNFEN----T 67 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~--------~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~~~~~~~~~~----~ 67 (154)
|++| .|+.|++||++.... ... +.+|...|.+++|+|++ ++|++++.|+.|++||+++.+. .
T Consensus 192 l~s~-~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 266 (447)
T 3dw8_B 192 YLSA-DDLRINLWHLEITDR----SFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHS 266 (447)
T ss_dssp EEEE-CSSEEEEEETTEEEE----EEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTC
T ss_pred EEEe-CCCeEEEEECCCCCc----eeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccccee
Confidence 4667 799999999984332 222 34899999999999998 9999999999999999998775 2
Q ss_pred eeEeecCCCCc-------eEeEEEEEEcCCCcEEEEEccCCeEEEecCCC-ccceeEEeCCCcCCc-------------c
Q 038702 68 AMIHHNNQTGR-------WISSFRAIWGWDDSCIFIGNMTRTVEVISPAQ-RRSVATLQSPYISAI-------------P 126 (154)
Q Consensus 68 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~-~~~~~~~~~~~~~~~-------------~ 126 (154)
..+........ ...+..++|+|++++|++++. +.|++||+++ ++++..+.+|..... .
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~ 345 (447)
T 3dw8_B 267 KLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDK 345 (447)
T ss_dssp EEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCC
T ss_pred eEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccc
Confidence 33321110000 002346789999999999998 9999999997 888888887643211 1
Q ss_pred eEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 127 CRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 127 ~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
..++|+| ++.+|++|+.||.|++||++
T Consensus 346 ~~~~~s~-~~~~l~s~s~dg~v~iwd~~ 372 (447)
T 3dw8_B 346 FECCWNG-SDSVVMTGSYNNFFRMFDRN 372 (447)
T ss_dssp CCEEECT-TSSEEEEECSTTEEEEEETT
T ss_pred eEEEECC-CCCEEEEeccCCEEEEEEcC
Confidence 2379999 78999999999999999974
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.94 E-value=5.1e-25 Score=143.22 Aligned_cols=146 Identities=13% Similarity=0.205 Sum_probs=113.4
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|++|+.|+.|++||+...+.. ....+.+|...|.+++|+|++++|++++.|+.|++||+++.+........ .+..
T Consensus 23 l~~~~~d~~v~i~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~-- 97 (372)
T 1k8k_C 23 IAICPNNHEVHIYEKSGNKWV--QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVIL-RINR-- 97 (372)
T ss_dssp EEEECSSSEEEEEEEETTEEE--EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECC-CCSS--
T ss_pred EEEEeCCCEEEEEeCCCCcEE--eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEee-cCCC--
Confidence 478889999999999876410 04445589999999999999999999999999999999877643332211 1222
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccc---eeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRS---VATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.+..++|+|+++++++++.|+.|++||++.++. ...+...+...+ ..++|+| ++.+|++++.|+.|++||+
T Consensus 98 ~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i-~~~~~~~-~~~~l~~~~~dg~i~~~d~ 171 (372)
T 1k8k_C 98 AARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTV-LSLDWHP-NSVLLAAGSCDFKCRIFSA 171 (372)
T ss_dssp CEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCE-EEEEECT-TSSEEEEEETTSCEEEEEC
T ss_pred ceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCe-eEEEEcC-CCCEEEEEcCCCCEEEEEc
Confidence 234678999999999999999999999988764 333333333333 6899999 7899999999999999995
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-24 Score=141.24 Aligned_cols=146 Identities=12% Similarity=0.076 Sum_probs=107.0
Q ss_pred ecCCCcEEEEEccCCCCC----------CC-C-CceeecccCCeEEEEEcCCCCEEEEeeCCCe-EEEEeccccccceeE
Q 038702 4 SSTDGTACIWDLRSMATD----------KP-E-PTKVLSHKRAVHSAYFSPSGSSLATTSFDDT-IGIWSGVNFENTAMI 70 (154)
Q Consensus 4 ~~~d~~v~vw~~~~~~~~----------~~-~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-v~~~~~~~~~~~~~~ 70 (154)
|+.||.|++||+.++... .. . ...+.+|.+.|.+++|+|++++|++++.|++ |++||+++++....+
T Consensus 155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~ 234 (355)
T 3vu4_A 155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREF 234 (355)
T ss_dssp SSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEE
T ss_pred CCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 789999999999875410 00 0 2334589999999999999999999999998 999999988777655
Q ss_pred eecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccce--eEEeC------------------C-CcCCcceEE
Q 038702 71 HHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSV--ATLQS------------------P-YISAIPCRF 129 (154)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~--~~~~~------------------~-~~~~~~~~~ 129 (154)
... .+.. .+..++|+|++++|++++.|++|++||++.+... ..+.. . ........+
T Consensus 235 ~~g-~h~~--~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (355)
T 3vu4_A 235 RRG-LDRA--DVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKI 311 (355)
T ss_dssp ECT-TCCS--CEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEE
T ss_pred EcC-CCCC--cEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEE
Confidence 421 0112 3457789999999999999999999999765321 11100 0 001111457
Q ss_pred EecCCCccEEEEEcCCCeEEEeeC
Q 038702 130 HAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 130 ~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+|+| +++++++++.||.+++|++
T Consensus 312 a~~~-d~~~l~~~~~dg~~~~~~~ 334 (355)
T 3vu4_A 312 AWIS-ESSLVVVWPHTRMIETFKV 334 (355)
T ss_dssp EESS-SSEEEEEETTTTEEEEEEE
T ss_pred EEeC-CCCEEEEEeCCCeEEEEEE
Confidence 8999 7889999999999999985
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.4e-25 Score=141.58 Aligned_cols=143 Identities=10% Similarity=0.036 Sum_probs=116.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|++|+.||.|++||+.+++. ...+.+|...|.+++|+|++++|++++.|+.|++||+.+.+....+.+..
T Consensus 47 l~~~~~dg~i~vwd~~~~~~----~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------ 116 (369)
T 3zwl_B 47 LFSCSKDSSASVWYSLNGER----LGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPV------ 116 (369)
T ss_dssp EEEEESSSCEEEEETTTCCE----EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSS------
T ss_pred EEEEeCCCEEEEEeCCCchh----hhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCC------
Confidence 57899999999999987663 44445899999999999999999999999999999999887766655332
Q ss_pred eEEEEEEcCCCcEEEEEccC-----CeEEEecCCCccc-----------eeEEeCCCcCCcceEEEecCCCccEEEEEcC
Q 038702 81 SSFRAIWGWDDSCIFIGNMT-----RTVEVISPAQRRS-----------VATLQSPYISAIPCRFHAHPHQVGTLAGATG 144 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d-----~~i~i~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 144 (154)
....++|+|++.++++++.+ +.|++||+..... +..+..+........++|+| ++.+|++++.
T Consensus 117 ~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~ 195 (369)
T 3zwl_B 117 PVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST-KGKYIIAGHK 195 (369)
T ss_dssp CEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG-GGCEEEEEET
T ss_pred CeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC-CCCEEEEEcC
Confidence 23467899999999999998 9999999986643 33344343322447889999 8899999999
Q ss_pred CCeEEEeeCC
Q 038702 145 GGQVYVWTSD 154 (154)
Q Consensus 145 d~~i~~wd~~ 154 (154)
||.|++||++
T Consensus 196 dg~i~i~d~~ 205 (369)
T 3zwl_B 196 DGKISKYDVS 205 (369)
T ss_dssp TSEEEEEETT
T ss_pred CCEEEEEECC
Confidence 9999999974
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.2e-25 Score=161.32 Aligned_cols=141 Identities=16% Similarity=0.188 Sum_probs=119.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
+++|+.||+|++||+.+++. ...+.+|.+.|.+++|+|+++++++++.|+.|++||+.+++....+.. +...
T Consensus 630 l~s~~~d~~i~vw~~~~~~~----~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~---~~~~- 701 (1249)
T 3sfz_A 630 IASCGADKTLQVFKAETGEK----LLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDE---HSEQ- 701 (1249)
T ss_dssp EEEEETTSCEEEEETTTCCE----EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC---CSSC-
T ss_pred EEEEeCCCeEEEEECCCCCE----EEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcC---CCCc-
Confidence 57899999999999988764 445558999999999999999999999999999999998876654432 2222
Q ss_pred eEEEEEEcC--CCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGW--DDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~--~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+..++|+| ++.++++++.|+.|++||+++++.+..+.+|...+ ..++|+| ++.++++++.||.|++||+
T Consensus 702 -v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v--~~~~~sp-~~~~l~s~s~dg~v~vwd~ 772 (1249)
T 3sfz_A 702 -VNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSV--NHCRFSP-DDELLASCSADGTLRLWDV 772 (1249)
T ss_dssp -EEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCE--EEEEECS-STTEEEEEESSSEEEEEEG
T ss_pred -EEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCE--EEEEEec-CCCEEEEEECCCeEEEEeC
Confidence 34678998 55689999999999999999999999998776554 5789999 8899999999999999996
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.7e-25 Score=145.33 Aligned_cols=144 Identities=17% Similarity=0.251 Sum_probs=114.5
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecc------cCCeEEEEEcCCC-CEEEEeeCCC---eEEEEecccccc-cee
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSH------KRAVHSAYFSPSG-SSLATTSFDD---TIGIWSGVNFEN-TAM 69 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~-~~l~~~~~d~---~v~~~~~~~~~~-~~~ 69 (154)
|++++.|+.|++||++..+. ...+..| ...|.+++|+|++ .++++++.|+ .|++||+++... ...
T Consensus 181 l~~~~~dg~v~iwd~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~ 256 (416)
T 2pm9_A 181 FASAGSSNFASIWDLKAKKE----VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQT 256 (416)
T ss_dssp EEEESSSSCEEEEETTTTEE----EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBC
T ss_pred EEEEcCCCCEEEEECCCCCc----ceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEE
Confidence 47899999999999987653 2333333 7899999999987 6899999998 999999998643 222
Q ss_pred EeecCCCCceEeEEEEEEcC-CCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeE
Q 038702 70 IHHNNQTGRWISSFRAIWGW-DDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQV 148 (154)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 148 (154)
+.. .+.. .+..++|+| ++.+|++++.|+.|++||+++++.+..+..|...+ ..++|+|..+.+|++++.|+.|
T Consensus 257 ~~~--~~~~--~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v--~~~~~s~~~~~~l~s~~~d~~i 330 (416)
T 2pm9_A 257 LNQ--GHQK--GILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWC--FKTKFAPEAPDLFACASFDNKI 330 (416)
T ss_dssp CCS--CCSS--CEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCC--CCEEECTTCTTEEEECCSSSEE
T ss_pred eec--CccC--ceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCce--EEEEECCCCCCEEEEEecCCcE
Confidence 220 1111 344678999 89999999999999999999999999998776555 4789999333899999999999
Q ss_pred EEeeCC
Q 038702 149 YVWTSD 154 (154)
Q Consensus 149 ~~wd~~ 154 (154)
++||++
T Consensus 331 ~iw~~~ 336 (416)
T 2pm9_A 331 EVQTLQ 336 (416)
T ss_dssp EEEESC
T ss_pred EEEEcc
Confidence 999974
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=144.15 Aligned_cols=147 Identities=15% Similarity=0.155 Sum_probs=107.3
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCC-----------------CCEEEEeeCCCeEEEEeccc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPS-----------------GSSLATTSFDDTIGIWSGVN 63 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------------~~~l~~~~~d~~v~~~~~~~ 63 (154)
|++|+.|++|++||++...... ......+|...|.+++|+|+ +++|++++.|++|++||++.
T Consensus 120 lasgs~D~~i~lwd~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~ 198 (316)
T 3bg1_A 120 LACGSSDGAISLLTYTGEGQWE-VKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEE 198 (316)
T ss_dssp EEEECSSSCEEEEEECSSSCEE-ECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECT
T ss_pred EEEEcCCCCEEEEecCCCCCcc-eeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCC
Confidence 5789999999999998653200 01122378999999999997 47899999999999999975
Q ss_pred cccceeEeecCCCCceEeEEEEEEcCCC----cEEEEEccCCeEEEecCCCcc----ceeEEeCCCcCCcceEEEecCCC
Q 038702 64 FENTAMIHHNNQTGRWISSFRAIWGWDD----SCIFIGNMTRTVEVISPAQRR----SVATLQSPYISAIPCRFHAHPHQ 135 (154)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~d~~i~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 135 (154)
............+...+ ..++|+|++ .+|++++.|++|++|++++.. ....+..+... ..+++|+| +
T Consensus 199 ~~~~~~~~~l~~h~~~V--~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~--v~~v~~sp-~ 273 (316)
T 3bg1_A 199 DGQWKEEQKLEAHSDWV--RDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDV--VWHVSWSI-T 273 (316)
T ss_dssp TSCEEEEECCBCCSSCE--EEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSC--EEEEEECT-T
T ss_pred CCccceeeecccCCCce--EEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCc--EEEEEEcC-C
Confidence 43222222222233333 467899986 789999999999999987631 12334444332 36899999 8
Q ss_pred ccEEEEEcCCCeEEEeeC
Q 038702 136 VGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 136 ~~~l~~~~~d~~i~~wd~ 153 (154)
+.+|++++.|++|++|+.
T Consensus 274 g~~las~~~D~~v~lw~~ 291 (316)
T 3bg1_A 274 ANILAVSGGDNKVTLWKE 291 (316)
T ss_dssp TCCEEEEESSSCEEEEEE
T ss_pred CCEEEEEcCCCeEEEEEE
Confidence 899999999999999985
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-25 Score=143.45 Aligned_cols=146 Identities=17% Similarity=0.252 Sum_probs=111.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCC--CCEEEEeeCCCeEEEEeccccccceeEeecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPS--GSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (154)
|++|+.||.|++||+...... ....+.+|...|.+++|+|+ +++|++++.|+.|++||+.+.+........ .+..
T Consensus 26 l~~~~~dg~i~iw~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~~~ 102 (379)
T 3jrp_A 26 LATCSSDKTIKIFEVEGETHK--LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHA-VHSA 102 (379)
T ss_dssp EEEEETTSCEEEEEEETTEEE--EEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEEC-CCSS
T ss_pred EEEEECCCcEEEEecCCCcce--eeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeec-CCCc
Confidence 578999999999999743210 02334489999999999987 999999999999999999987632222211 1222
Q ss_pred eEeEEEEEEcCC--CcEEEEEccCCeEEEecCCCccc--eeEEeCCCcCCcceEEEecCC------------CccEEEEE
Q 038702 79 WISSFRAIWGWD--DSCIFIGNMTRTVEVISPAQRRS--VATLQSPYISAIPCRFHAHPH------------QVGTLAGA 142 (154)
Q Consensus 79 ~~~~~~~~~~~~--~~~l~~~~~d~~i~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~------------~~~~l~~~ 142 (154)
.+..++|+|+ +.++++++.|+.|++||+++... ...+..|...+ ..++|+|. ++.+|+++
T Consensus 103 --~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 178 (379)
T 3jrp_A 103 --SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGV--NSASWAPATIEEDGEHNGTKESRKFVTG 178 (379)
T ss_dssp --CEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCE--EEEEECCCC----------CTTCEEEEE
T ss_pred --ceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCce--EEEEEcCccccccccccCCCCCCEEEEE
Confidence 2446789999 99999999999999999998743 33444444333 67899985 57899999
Q ss_pred cCCCeEEEeeC
Q 038702 143 TGGGQVYVWTS 153 (154)
Q Consensus 143 ~~d~~i~~wd~ 153 (154)
+.|+.|++||+
T Consensus 179 ~~dg~i~i~d~ 189 (379)
T 3jrp_A 179 GADNLVKIWKY 189 (379)
T ss_dssp ETTSCEEEEEE
T ss_pred eCCCeEEEEEe
Confidence 99999999986
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.94 E-value=8.3e-25 Score=143.47 Aligned_cols=148 Identities=16% Similarity=0.172 Sum_probs=116.5
Q ss_pred CeeecCCCcEEEEEccC------CCCCCCCCc-ee-------ecccCCeEEEEEcCCCCEEEEeeCCCeEEEEecccccc
Q 038702 1 MATSSTDGTACIWDLRS------MATDKPEPT-KV-------LSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN 66 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~------~~~~~~~~~-~~-------~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~ 66 (154)
|++|+.|+.|++||+.. ......... .+ ..|...|.+++|+|++ .+++++.|+.|++||+++.+.
T Consensus 141 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~ 219 (397)
T 1sq9_A 141 LVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRP 219 (397)
T ss_dssp EEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEE
T ss_pred EEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCce
Confidence 47899999999999987 443111111 33 2388999999999999 999999999999999998766
Q ss_pred ceeEeecCCC---CceEeEEEEEEcCCCcEEEEEccC---CeEEEecCCCccceeEEeC-------------CCcCCcce
Q 038702 67 TAMIHHNNQT---GRWISSFRAIWGWDDSCIFIGNMT---RTVEVISPAQRRSVATLQS-------------PYISAIPC 127 (154)
Q Consensus 67 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~d---~~i~i~~~~~~~~~~~~~~-------------~~~~~~~~ 127 (154)
...+.....+ .. ....++|+|++.+|++++.| +.|++||+++++.+..+.. |...+ .
T Consensus 220 ~~~~~~~~~h~~~~~--~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~ 295 (397)
T 1sq9_A 220 LYNFESQHSMINNSN--SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWV--M 295 (397)
T ss_dssp EEEEECCC---CCCC--CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCE--E
T ss_pred eEEEeccccccccCC--ccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcE--E
Confidence 5544420001 22 23467899999999999999 9999999999999988876 43333 6
Q ss_pred EEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 128 RFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 128 ~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.++|+| ++.+|++++.|+.|++||+.
T Consensus 296 ~~~~~~-~~~~l~~~~~dg~i~iwd~~ 321 (397)
T 1sq9_A 296 SLSFND-SGETLCSAGWDGKLRFWDVK 321 (397)
T ss_dssp EEEECS-SSSEEEEEETTSEEEEEETT
T ss_pred EEEECC-CCCEEEEEeCCCeEEEEEcC
Confidence 889999 78999999999999999973
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-24 Score=141.50 Aligned_cols=144 Identities=10% Similarity=-0.035 Sum_probs=103.0
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCC-----------------------------------CE
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSG-----------------------------------SS 46 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------------------------------~~ 46 (154)
++++.|++|++||..+++ ......+...|.+++|+++. ..
T Consensus 75 ~~~~~d~~v~iWd~~~~~-----~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~ 149 (355)
T 3vu4_A 75 FVTGVKEVVHIWDDVKKQ-----DVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGL 149 (355)
T ss_dssp EECSSTTEEEEEETTTTE-----EEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTE
T ss_pred EEECCccEEEEEECCCCc-----EEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccE
Confidence 467888999999998765 34445677788888887643 12
Q ss_pred EEE--eeCCCeEEEEeccccccce------------e-EeecCCCCceEeEEEEEEcCCCcEEEEEccCCe-EEEecCCC
Q 038702 47 LAT--TSFDDTIGIWSGVNFENTA------------M-IHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRT-VEVISPAQ 110 (154)
Q Consensus 47 l~~--~~~d~~v~~~~~~~~~~~~------------~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~-i~i~~~~~ 110 (154)
++. |+.||.|++||+++..... . ......+.. .+..++|+|++++|++++.|++ |++||+++
T Consensus 150 la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~--~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~ 227 (355)
T 3vu4_A 150 LVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTN--PIKMVRLNRKSDMVATCSQDGTIIRVFKTED 227 (355)
T ss_dssp EEEEESSCTTCEEEEECCC------------------CCEEECCCSS--CEEEEEECTTSSEEEEEETTCSEEEEEETTT
T ss_pred EEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCC--ceEEEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence 333 4567777777776543100 0 011111222 2346789999999999999998 99999999
Q ss_pred ccceeEEe-CCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 111 RRSVATLQ-SPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 111 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
++.+..+. +.+...+ .+++|+| ++.+|++++.|++|++||++
T Consensus 228 ~~~~~~~~~g~h~~~v-~~~~~s~-~~~~l~s~s~d~~v~iw~~~ 270 (355)
T 3vu4_A 228 GVLVREFRRGLDRADV-VDMKWST-DGSKLAVVSDKWTLHVFEIF 270 (355)
T ss_dssp CCEEEEEECTTCCSCE-EEEEECT-TSCEEEEEETTCEEEEEESS
T ss_pred CcEEEEEEcCCCCCcE-EEEEECC-CCCEEEEEECCCEEEEEEcc
Confidence 99999998 4233433 6899999 88999999999999999973
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-24 Score=141.60 Aligned_cols=145 Identities=13% Similarity=0.203 Sum_probs=111.5
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCC-EEEEeeCCCeEEEEeccccccceeEe-e------
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGS-SLATTSFDDTIGIWSGVNFENTAMIH-H------ 72 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~~~~~~~~~~~~~~~-~------ 72 (154)
+++|+.|+.|++||+++++. ...+.+|...|.+++|+|++. .|++++.|+.|++||+++........ .
T Consensus 159 ~~~~~~~~~v~~~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 234 (408)
T 4a11_B 159 VAVGTRGPKVQLCDLKSGSC----SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKS 234 (408)
T ss_dssp EEEEESSSSEEEEESSSSCC----CEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSC
T ss_pred EEEEcCCCeEEEEeCCCcce----eeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccc
Confidence 47889999999999987764 445558999999999999998 58999999999999998765322111 0
Q ss_pred ------cCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccc---------------------------------
Q 038702 73 ------NNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRS--------------------------------- 113 (154)
Q Consensus 73 ------~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~--------------------------------- 113 (154)
...+.. .+..++|+|++++|++++.|+.|++||+++++.
T Consensus 235 ~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (408)
T 4a11_B 235 QAVESANTAHNG--KVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPY 312 (408)
T ss_dssp CCTTTSSCSCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEE
T ss_pred eeeccccccccC--ceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEec
Confidence 011222 344678999999999999999999999876543
Q ss_pred --------------eeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 114 --------------VATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 114 --------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
+..+.+|...+ ..++|+| ++.+|++++.||.|++||++
T Consensus 313 ~~~i~v~d~~~~~~~~~~~~~~~~v--~~~~~s~-~~~~l~s~~~dg~i~iw~~~ 364 (408)
T 4a11_B 313 GSTIAVYTVYSGEQITMLKGHYKTV--DCCVFQS-NFQELYSGSRDCNILAWVPS 364 (408)
T ss_dssp TTEEEEEETTTCCEEEEECCCSSCE--EEEEEET-TTTEEEEEETTSCEEEEEEC
T ss_pred CCEEEEEECcCCcceeeeccCCCeE--EEEEEcC-CCCEEEEECCCCeEEEEeCC
Confidence 33334343333 5789999 78999999999999999974
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-24 Score=144.64 Aligned_cols=146 Identities=16% Similarity=0.252 Sum_probs=112.4
Q ss_pred CeeecCCCcEEEEEccCCCCCCC--C-CceeecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccc---cceeEeec
Q 038702 1 MATSSTDGTACIWDLRSMATDKP--E-PTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFE---NTAMIHHN 73 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~--~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~---~~~~~~~~ 73 (154)
|++|+.||.|++|++........ . ...+.+|...|.+++|+| ++..|++++.|+.|++||+++.. ....+.
T Consensus 197 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~-- 274 (430)
T 2xyi_A 197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-- 274 (430)
T ss_dssp EEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE--
T ss_pred EEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee--
Confidence 57899999999999987432100 0 123348999999999999 77899999999999999999874 222221
Q ss_pred CCCCceEeEEEEEEcCCCc-EEEEEccCCeEEEecCCC-ccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEe
Q 038702 74 NQTGRWISSFRAIWGWDDS-CIFIGNMTRTVEVISPAQ-RRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 151 (154)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w 151 (154)
.+... +..++|+|++. ++++++.||.|++||+++ .+.+..+..|...+ .+++|+|....+|++++.|+.|++|
T Consensus 275 -~~~~~--v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v--~~i~~sp~~~~~l~s~~~d~~i~iw 349 (430)
T 2xyi_A 275 -AHTAE--VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEI--FQVQWSPHNETILASSGTDRRLHVW 349 (430)
T ss_dssp -CCSSC--EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCE--EEEEECSSCTTEEEEEETTSCCEEE
T ss_pred -cCCCC--eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCE--EEEEECCCCCCEEEEEeCCCcEEEE
Confidence 12222 34678999887 688999999999999997 56677887665444 6889999554689999999999999
Q ss_pred eC
Q 038702 152 TS 153 (154)
Q Consensus 152 d~ 153 (154)
|+
T Consensus 350 d~ 351 (430)
T 2xyi_A 350 DL 351 (430)
T ss_dssp EG
T ss_pred eC
Confidence 97
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-25 Score=153.87 Aligned_cols=142 Identities=11% Similarity=0.092 Sum_probs=115.7
Q ss_pred CeeecC-CCcEEEEEccCCCCCCCCC-ceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCc
Q 038702 1 MATSST-DGTACIWDLRSMATDKPEP-TKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGR 78 (154)
Q Consensus 1 l~~~~~-d~~v~vw~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (154)
|++++. |+.|++||+..... . ..+.+|...|.+++|+|++++|++++.|+.|++||+.+.+....+.. .+..
T Consensus 459 l~~~~~~d~~i~~~~~~~~~~----~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~h~~ 532 (615)
T 1pgu_A 459 VAVGLEEGNTIQVFKLSDLEV----SFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWA--FRTS 532 (615)
T ss_dssp EEEEETTTSCEEEEETTEEEE----EEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSC--CCSS
T ss_pred EEEeecCCCeEEEEECCCccc----cccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeec--CCCC
Confidence 467888 99999999987642 1 33347999999999999999999999999999999988776544321 0222
Q ss_pred eEeEEEEEEcC----------CCcEEEEEccCCeEEEecCCCc-cceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCe
Q 038702 79 WISSFRAIWGW----------DDSCIFIGNMTRTVEVISPAQR-RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQ 147 (154)
Q Consensus 79 ~~~~~~~~~~~----------~~~~l~~~~~d~~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 147 (154)
.+..++|+| ++++|++++.|+.|++||+.++ +.+..+.+|...+ ..++|+| ++. |++++.|+.
T Consensus 533 --~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v--~~l~~s~-~~~-l~s~~~d~~ 606 (615)
T 1pgu_A 533 --KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGV--NNLLWET-PST-LVSSGADAC 606 (615)
T ss_dssp --CEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCE--EEEEEEE-TTE-EEEEETTSC
T ss_pred --ceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccce--EEEEEcC-CCC-eEEecCCce
Confidence 344678999 9999999999999999999988 7777777765444 6789999 677 999999999
Q ss_pred EEEeeCC
Q 038702 148 VYVWTSD 154 (154)
Q Consensus 148 i~~wd~~ 154 (154)
|++||++
T Consensus 607 v~iw~~~ 613 (615)
T 1pgu_A 607 IKRWNVV 613 (615)
T ss_dssp EEEEEEC
T ss_pred EEEEeee
Confidence 9999974
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.93 E-value=6.5e-25 Score=155.04 Aligned_cols=142 Identities=14% Similarity=0.090 Sum_probs=117.6
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|++|+.||.|++||+.++.. ...+.+|..+|.+++|+|++++|++++.|+.|++||+.+++....+.. +..
T Consensus 28 la~~~~~g~v~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~---~~~-- 98 (814)
T 3mkq_A 28 VLTTLYSGRVEIWNYETQVE----VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA---HPD-- 98 (814)
T ss_dssp EEEEETTSEEEEEETTTTEE----EEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEEC---CSS--
T ss_pred EEEEeCCCEEEEEECCCCce----EEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEec---CCC--
Confidence 57899999999999988663 445558999999999999999999999999999999998876654431 112
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCc-cceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQR-RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.+..++|+|++++|++++.||.|++||+.++ .....+.+|...+ ..++|+|.++..|++++.||.|++||+
T Consensus 99 ~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v--~~~~~~p~~~~~l~~~~~dg~v~vwd~ 170 (814)
T 3mkq_A 99 YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFV--MCVAFNPKDPSTFASGCLDRTVKVWSL 170 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCE--EEEEEETTEEEEEEEEETTSEEEEEET
T ss_pred CEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcE--EEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 2446789999999999999999999999987 5566666655443 578999966789999999999999997
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-24 Score=141.09 Aligned_cols=141 Identities=8% Similarity=0.029 Sum_probs=112.4
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeec-----ccCCeEEEEEcCC----CCEEEEeeCCCeEEEEeccccccceeEee
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLS-----HKRAVHSAYFSPS----GSSLATTSFDDTIGIWSGVNFENTAMIHH 72 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~----~~~l~~~~~d~~v~~~~~~~~~~~~~~~~ 72 (154)
++++.++.|++||+.+++. ...+.. |...|.+++|+|+ +++|++++.|+.|++||+.+.+....+..
T Consensus 38 ~~~~~~~~v~vw~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~ 113 (366)
T 3k26_A 38 FATVGSNRVTLYECHSQGE----IRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVG 113 (366)
T ss_dssp EEEEETTEEEEEEECGGGC----EEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEES
T ss_pred EEECCCCEEEEEEcCCCcE----EEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecC
Confidence 4566677999999987653 222222 6688999999998 67999999999999999998776554431
Q ss_pred cCCCCceEeEEEEEEcC-CCcEEEEEccCCeEEEecCCCccceeEE---eCCCcCCcceEEEecCCCccEEEEEcCCCeE
Q 038702 73 NNQTGRWISSFRAIWGW-DDSCIFIGNMTRTVEVISPAQRRSVATL---QSPYISAIPCRFHAHPHQVGTLAGATGGGQV 148 (154)
Q Consensus 73 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 148 (154)
+.. .+..++|+| ++.+|++++.|+.|++||+++++.+..+ ..|...+ ..++|+| ++.+|++++.||.|
T Consensus 114 ---~~~--~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v--~~~~~~~-~~~~l~~~~~dg~i 185 (366)
T 3k26_A 114 ---HGN--AINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEV--LSADYDL-LGEKIMSCGMDHSL 185 (366)
T ss_dssp ---CCS--CEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCE--EEEEECT-TSSEEEEEETTSCE
T ss_pred ---CCC--cEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCce--eEEEECC-CCCEEEEecCCCCE
Confidence 222 234678999 8999999999999999999999988887 3444333 6899999 88999999999999
Q ss_pred EEeeCC
Q 038702 149 YVWTSD 154 (154)
Q Consensus 149 ~~wd~~ 154 (154)
++||++
T Consensus 186 ~i~d~~ 191 (366)
T 3k26_A 186 KLWRIN 191 (366)
T ss_dssp EEEESC
T ss_pred EEEECC
Confidence 999974
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-24 Score=141.60 Aligned_cols=140 Identities=20% Similarity=0.216 Sum_probs=118.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
+++++.|+.|++||++.... ...+..|...|.+++|+|++++|++++.|+.|++||+++.+....+.. +..
T Consensus 220 ~~~~~~~g~i~~~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~-- 290 (425)
T 1r5m_A 220 FVIPGPKGAIFVYQITEKTP----TGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYG---HSQ-- 290 (425)
T ss_dssp EEEECGGGCEEEEETTCSSC----SEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECC---CSS--
T ss_pred EEEEcCCCeEEEEEcCCCce----eeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecC---CCc--
Confidence 46789999999999988764 445558999999999999999999999999999999998776655532 111
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
....++|+|++ ++++++.|+.|++||+++++.+..+..+...+ ..++|+| ++.+|++++.||.|++||+
T Consensus 291 ~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i--~~~~~s~-~~~~l~~~~~dg~i~i~~~ 359 (425)
T 1r5m_A 291 SIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPI--FAGRISQ-DGQKYAVAFMDGQVNVYDL 359 (425)
T ss_dssp CEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCE--EEEEECT-TSSEEEEEETTSCEEEEEC
T ss_pred cEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccE--EEEEEcC-CCCEEEEEECCCeEEEEEC
Confidence 23467899999 99999999999999999999988888665444 5789999 7899999999999999997
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-24 Score=139.72 Aligned_cols=146 Identities=14% Similarity=0.105 Sum_probs=114.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeec-CCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHN-NQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~-~~~~~~ 79 (154)
|++++.|+.|++||+..++.. .......|...|.+++|+|++++|++++.|+.+++||++........... ..+..
T Consensus 67 l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~- 143 (372)
T 1k8k_C 67 IVTCGTDRNAYVWTLKGRTWK--PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS- 143 (372)
T ss_dssp EEEEETTSCEEEEEEETTEEE--EEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS-
T ss_pred EEEEcCCCeEEEEECCCCeee--eeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCC-
Confidence 578999999999999765420 01223478999999999999999999999999999999887643322211 22222
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCC------------------CccceeEEeCCCcCCcceEEEecCCCccEEEE
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPA------------------QRRSVATLQSPYISAIPCRFHAHPHQVGTLAG 141 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 141 (154)
.+..++|+|+++++++++.|+.|++||++ .++.+..+..|...+ ..++|+| ++.+|++
T Consensus 144 -~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~-~~~~l~~ 219 (372)
T 1k8k_C 144 -TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWV--HGVCFSA-NGSRVAW 219 (372)
T ss_dssp -CEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCE--EEEEECS-SSSEEEE
T ss_pred -CeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeE--EEEEECC-CCCEEEE
Confidence 33467899999999999999999999954 567777776554433 6789999 7889999
Q ss_pred EcCCCeEEEeeC
Q 038702 142 ATGGGQVYVWTS 153 (154)
Q Consensus 142 ~~~d~~i~~wd~ 153 (154)
++.|+.|++||+
T Consensus 220 ~~~d~~i~i~d~ 231 (372)
T 1k8k_C 220 VSHDSTVCLADA 231 (372)
T ss_dssp EETTTEEEEEEG
T ss_pred EeCCCEEEEEEC
Confidence 999999999997
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-24 Score=143.19 Aligned_cols=141 Identities=19% Similarity=0.259 Sum_probs=112.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCC-EEEEee--CCCeEEEEeccccccceeEeecCCCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGS-SLATTS--FDDTIGIWSGVNFENTAMIHHNNQTG 77 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~d~~v~~~~~~~~~~~~~~~~~~~~~ 77 (154)
|++|+.|+.|++||+++... ...+..|...|.+++|+|++. .+++++ .|+.|++||+++.+....+.+..
T Consensus 232 l~s~~~d~~v~iwd~~~~~~----~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~--- 304 (401)
T 4aez_A 232 LASGGNDNVVQIWDARSSIP----KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGS--- 304 (401)
T ss_dssp EEEEETTSCEEEEETTCSSE----EEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSS---
T ss_pred EEEEeCCCeEEEccCCCCCc----cEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCC---
Confidence 57899999999999987653 344458999999999999764 566654 79999999999887766554432
Q ss_pred ceEeEEEEEEcCCCcEEEE--EccCCeEEEecCCCccceeE--EeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 78 RWISSFRAIWGWDDSCIFI--GNMTRTVEVISPAQRRSVAT--LQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~--~~~d~~i~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
....++|+|+++++++ |+.||.|++|++.+++.... +.+|...+ ..++|+| ++.+|++++.||.|++||+
T Consensus 305 ---~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v--~~~~~s~-dg~~l~s~~~dg~i~iw~~ 378 (401)
T 4aez_A 305 ---QVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRV--LYSALSP-DGRILSTAASDENLKFWRV 378 (401)
T ss_dssp ---CEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCC--CEEEECT-TSSEEEEECTTSEEEEEEC
T ss_pred ---cEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCE--EEEEECC-CCCEEEEEeCCCcEEEEEC
Confidence 2446789999999999 55899999999998655444 55555444 5789999 8899999999999999997
Q ss_pred C
Q 038702 154 D 154 (154)
Q Consensus 154 ~ 154 (154)
.
T Consensus 379 ~ 379 (401)
T 4aez_A 379 Y 379 (401)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.3e-24 Score=143.14 Aligned_cols=139 Identities=9% Similarity=0.050 Sum_probs=111.5
Q ss_pred eeecCCCcEEEEEcc--CCCCCCCCCceee--cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccce-----eEee
Q 038702 2 ATSSTDGTACIWDLR--SMATDKPEPTKVL--SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTA-----MIHH 72 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~--~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~-----~~~~ 72 (154)
++|+.||.|++||+. .++. ...+. .|...|.+++|+|++++|++++.++.+.+|++.+..... ...|
T Consensus 119 ~~~~~dg~v~iwd~~~~~~~~----~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h 194 (450)
T 2vdu_B 119 ACADSDKSLLVFDVDKTSKNV----LKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGH 194 (450)
T ss_dssp EEEGGGTEEEEEEECSSSSSC----EEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEEC
T ss_pred EEECCCCeEEEEECcCCCCce----eeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecc
Confidence 789999999999998 5542 22232 577899999999999999999999999999998766542 2222
Q ss_pred cCCCCceEeEEEEEEcCC---CcEEEEEccCCeEEEecCCCccceeEEe-CCCcCCcceEEEecCCCccEEEEEcCCCeE
Q 038702 73 NNQTGRWISSFRAIWGWD---DSCIFIGNMTRTVEVISPAQRRSVATLQ-SPYISAIPCRFHAHPHQVGTLAGATGGGQV 148 (154)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~---~~~l~~~~~d~~i~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 148 (154)
.. .+..++|+|+ +++|++++.|+.|++||+++++.+..+. +|...+ ..++|+ ++.+|++++.|+.|
T Consensus 195 ~~------~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v--~~~~~s--d~~~l~s~~~d~~v 264 (450)
T 2vdu_B 195 VS------MLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFV--SSICCG--KDYLLLSAGGDDKI 264 (450)
T ss_dssp SS------CEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCE--EEEEEC--STTEEEEEESSSEE
T ss_pred cC------ceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCce--EEEEEC--CCCEEEEEeCCCeE
Confidence 22 2346789999 9999999999999999999998887744 444333 577888 67899999999999
Q ss_pred EEeeCC
Q 038702 149 YVWTSD 154 (154)
Q Consensus 149 ~~wd~~ 154 (154)
++||++
T Consensus 265 ~vwd~~ 270 (450)
T 2vdu_B 265 FAWDWK 270 (450)
T ss_dssp EEEETT
T ss_pred EEEECC
Confidence 999973
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.8e-25 Score=144.58 Aligned_cols=152 Identities=13% Similarity=0.187 Sum_probs=116.3
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCC-CCEEEEeeCCCeEEEEeccccc------cceeEeec
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPS-GSSLATTSFDDTIGIWSGVNFE------NTAMIHHN 73 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~~~~~~~~~------~~~~~~~~ 73 (154)
|++|+.|+.|++||+............+.+|...|.+++|+|+ +++|++++.|+.|++||+++.+ ........
T Consensus 82 l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 161 (416)
T 2pm9_A 82 IAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQS 161 (416)
T ss_dssp EEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCS
T ss_pred EEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccc
Confidence 5788999999999998732211113344589999999999998 8999999999999999999876 33222111
Q ss_pred CCCCceEeEEEEEEcCC-CcEEEEEccCCeEEEecCCCccceeEEeCCCc----CCcceEEEecCCCccEEEEEcCCC--
Q 038702 74 NQTGRWISSFRAIWGWD-DSCIFIGNMTRTVEVISPAQRRSVATLQSPYI----SAIPCRFHAHPHQVGTLAGATGGG-- 146 (154)
Q Consensus 74 ~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~d~-- 146 (154)
..+... +..++|+|+ +.++++++.|+.|++||+++++.+..+..+.. ......++|+|....++++++.|+
T Consensus 162 ~~~~~~--v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~ 239 (416)
T 2pm9_A 162 MSSVDE--VISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDND 239 (416)
T ss_dssp CCSSCC--CCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSS
T ss_pred cCCCCC--eeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCC
Confidence 122222 336789999 78999999999999999999998888876531 223378999995457999999999
Q ss_pred -eEEEeeCC
Q 038702 147 -QVYVWTSD 154 (154)
Q Consensus 147 -~i~~wd~~ 154 (154)
.|++||+.
T Consensus 240 ~~i~~~d~~ 248 (416)
T 2pm9_A 240 PSILIWDLR 248 (416)
T ss_dssp CCCCEEETT
T ss_pred ceEEEEeCC
Confidence 99999973
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.93 E-value=3.9e-24 Score=142.11 Aligned_cols=150 Identities=13% Similarity=0.143 Sum_probs=112.7
Q ss_pred CeeecCCCcEEEEEccCCCC------CCCCCceeecccCCeEEEEEcCCCC-EEEEeeCCCeEEEEeccccccc-ee---
Q 038702 1 MATSSTDGTACIWDLRSMAT------DKPEPTKVLSHKRAVHSAYFSPSGS-SLATTSFDDTIGIWSGVNFENT-AM--- 69 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~~~~~~~~~~~-~~--- 69 (154)
|++++.||.|++|++..... .......+.+|...|++++|+|++. +|++++.||.|++|++...... ..
T Consensus 144 lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 223 (430)
T 2xyi_A 144 IATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDA 223 (430)
T ss_dssp EEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEEC
T ss_pred EEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceecc
Confidence 57899999999999986211 0111444558999999999999988 9999999999999999874321 11
Q ss_pred EeecCCCCceEeEEEEEEcC-CCcEEEEEccCCeEEEecCCCc---cceeEEeCCCcCCcceEEEecCCCccEEEEEcCC
Q 038702 70 IHHNNQTGRWISSFRAIWGW-DDSCIFIGNMTRTVEVISPAQR---RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGG 145 (154)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 145 (154)
......+.. .+..++|+| ++.++++++.|+.|++||++++ +.+..+..|...+ .+++|+|....+|++|+.|
T Consensus 224 ~~~~~~h~~--~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v--~~i~~~p~~~~~l~tg~~d 299 (430)
T 2xyi_A 224 KNIFTGHTA--VVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV--NCLSFNPYSEFILATGSAD 299 (430)
T ss_dssp SEEECCCSS--CEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE--EEEEECSSCTTEEEEEETT
T ss_pred ceeecCCCC--CEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe--EEEEeCCCCCCEEEEEeCC
Confidence 111112222 234678999 6789999999999999999987 5667776555443 6789999544589999999
Q ss_pred CeEEEeeCC
Q 038702 146 GQVYVWTSD 154 (154)
Q Consensus 146 ~~i~~wd~~ 154 (154)
|.|++||+.
T Consensus 300 g~v~vwd~~ 308 (430)
T 2xyi_A 300 KTVALWDLR 308 (430)
T ss_dssp SEEEEEETT
T ss_pred CeEEEEeCC
Confidence 999999973
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-24 Score=155.44 Aligned_cols=146 Identities=9% Similarity=0.016 Sum_probs=113.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEee------cC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHH------NN 74 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~------~~ 74 (154)
|++++.|++|++||+.+++ ......|.+.|++++|+|+++++++|+.||.|++||+++......... ..
T Consensus 72 L~S~s~D~~v~lWd~~~~~-----~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~ 146 (902)
T 2oaj_A 72 LVVINAKDTVYVLSLYSQK-----VLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFF 146 (902)
T ss_dssp EEEEETTCEEEEEETTTCS-----EEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTC
T ss_pred EEEEECcCeEEEEECCCCc-----EEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccc
Confidence 5789999999999998765 444456888999999999999999999999999999987764311100 01
Q ss_pred CCCceEeEEEEEEcCC-CcEEEEEccCCeEEEecCCCccceeEEeCCC----------------cCCcceEEEecCCCcc
Q 038702 75 QTGRWISSFRAIWGWD-DSCIFIGNMTRTVEVISPAQRRSVATLQSPY----------------ISAIPCRFHAHPHQVG 137 (154)
Q Consensus 75 ~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~ 137 (154)
..++...+.+++|+|+ +..+++++.|+.| +||+++++.+..+..+. ......+++|+| ++.
T Consensus 147 ~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp-dg~ 224 (902)
T 2oaj_A 147 PAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP-NSL 224 (902)
T ss_dssp SSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT-TSS
T ss_pred cccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC-CCC
Confidence 1111123346789996 5789999999999 99999999888887541 012237899999 789
Q ss_pred EEEEEcCCCeEEEeeC
Q 038702 138 TLAGATGGGQVYVWTS 153 (154)
Q Consensus 138 ~l~~~~~d~~i~~wd~ 153 (154)
+|++++.||+|++||+
T Consensus 225 ~lasgs~Dg~i~lWd~ 240 (902)
T 2oaj_A 225 HIITIHEDNSLVFWDA 240 (902)
T ss_dssp EEEEEETTCCEEEEET
T ss_pred EEEEEECCCeEEEEEC
Confidence 9999999999999997
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-24 Score=143.65 Aligned_cols=149 Identities=10% Similarity=0.077 Sum_probs=110.1
Q ss_pred CeeecCCCcEEEEEccCCCCC--------------------CCCC--------------c-e-eecccCCeEEEEEcCCC
Q 038702 1 MATSSTDGTACIWDLRSMATD--------------------KPEP--------------T-K-VLSHKRAVHSAYFSPSG 44 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~--------------------~~~~--------------~-~-~~~~~~~v~~~~~~~~~ 44 (154)
|++++.|+.|++||+...... .... . . ..+|...|.+++|+|++
T Consensus 110 l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 189 (447)
T 3dw8_B 110 FLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDY 189 (447)
T ss_dssp EEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTS
T ss_pred EEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCC
Confidence 578999999999999763210 0000 0 1 23799999999999999
Q ss_pred CEEEEeeCCCeEEEEecccccc-ceeEe----ecCCCCceEeEEEEEEcCCC-cEEEEEccCCeEEEecCCCccc----e
Q 038702 45 SSLATTSFDDTIGIWSGVNFEN-TAMIH----HNNQTGRWISSFRAIWGWDD-SCIFIGNMTRTVEVISPAQRRS----V 114 (154)
Q Consensus 45 ~~l~~~~~d~~v~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~~~~~~~~----~ 114 (154)
++|+++ .|+.|++||++.... ..... ....+.. .+..++|+|++ .+|++++.|+.|++||+++++. +
T Consensus 190 ~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 266 (447)
T 3dw8_B 190 ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTE--VITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHS 266 (447)
T ss_dssp SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCC--CEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTC
T ss_pred CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCc--ceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccccee
Confidence 999998 799999999985432 22221 1111222 34467899998 9999999999999999999886 6
Q ss_pred eEEeCCCcC----------CcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 115 ATLQSPYIS----------AIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 115 ~~~~~~~~~----------~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
..+..+... .....++|+| ++.+|++++. +.|++||+.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~-~~v~iwd~~ 314 (447)
T 3dw8_B 267 KLFEEPEDPSNRSFFSEIISSISDVKFSH-SGRYMMTRDY-LSVKVWDLN 314 (447)
T ss_dssp EEECCC-----CCHHHHHTTCEEEEEECT-TSSEEEEEES-SEEEEEETT
T ss_pred eEeccCCCccccccccccCceEEEEEECC-CCCEEEEeeC-CeEEEEeCC
Confidence 777765441 1236899999 8899999999 999999973
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-24 Score=139.34 Aligned_cols=141 Identities=13% Similarity=0.185 Sum_probs=111.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeeccc----CCeEEEE----EcCCCCEEEEeeCCCeEEEEeccccccceeEee
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHK----RAVHSAY----FSPSGSSLATTSFDDTIGIWSGVNFENTAMIHH 72 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~----~~v~~~~----~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~ 72 (154)
|++|+.|+.|++||++..... ...+..|. ..+.+++ |+|+++++++++.|+.|++||+++.+......+
T Consensus 132 l~~~~~d~~i~vwd~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 208 (357)
T 3i2n_A 132 IVTGSRDGTVKVWDPRQKDDP---VANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNI 208 (357)
T ss_dssp EEEEETTSCEEEECTTSCSSC---SEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred EEEEeCCCeEEEEeCCCCCCc---ceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCC
Confidence 578999999999999876531 23333333 3899998 788999999999999999999998876544444
Q ss_pred cCCCCceEeEEEEEEcC---CCcEEEEEccCCeEEEecCCCccceeEEe-----CCCcCCcceEEEecCCCcc-EEEEEc
Q 038702 73 NNQTGRWISSFRAIWGW---DDSCIFIGNMTRTVEVISPAQRRSVATLQ-----SPYISAIPCRFHAHPHQVG-TLAGAT 143 (154)
Q Consensus 73 ~~~~~~~~~~~~~~~~~---~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~l~~~~ 143 (154)
.. .+..++|+| ++.++++++.|+.|++||+++++.+..+. +|...+ ..++|+| ++. +|++++
T Consensus 209 ~~------~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~-~~~~~l~~~~ 279 (357)
T 3i2n_A 209 KN------GVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTV--WQVRHLP-QNRELFLTAG 279 (357)
T ss_dssp SS------CEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCE--EEEEEET-TEEEEEEEEE
T ss_pred CC------ceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCE--EEEEECC-CCCcEEEEEe
Confidence 32 244678999 89999999999999999999887766554 554433 6789999 666 899999
Q ss_pred CCCeEEEeeC
Q 038702 144 GGGQVYVWTS 153 (154)
Q Consensus 144 ~d~~i~~wd~ 153 (154)
.||.|++||+
T Consensus 280 ~dg~i~iwd~ 289 (357)
T 3i2n_A 280 GAGGLHLWKY 289 (357)
T ss_dssp TTSEEEEEEE
T ss_pred CCCcEEEeec
Confidence 9999999996
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-24 Score=144.23 Aligned_cols=143 Identities=15% Similarity=0.130 Sum_probs=113.3
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEc--CCCCEEEEeeCCCeEEEEeccccccceeE--------
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFS--PSGSSLATTSFDDTIGIWSGVNFENTAMI-------- 70 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~v~~~~~~~~~~~~~~-------- 70 (154)
|++|+.||+|++||+++++. ...+.+|.+.|.+++|+ ++++++++++.|+.|++||+++.......
T Consensus 176 l~s~s~dg~i~vwd~~~~~~----~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~ 251 (464)
T 3v7d_B 176 LVSGSTDRTVRVWDIKKGCC----THVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL 251 (464)
T ss_dssp EEEEETTSCEEEEETTTTEE----EEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSE
T ss_pred EEEEeCCCCEEEEECCCCcE----EEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcce
Confidence 57899999999999987763 34444899999999998 47789999999999999999876543211
Q ss_pred ------------eecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccE
Q 038702 71 ------------HHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGT 138 (154)
Q Consensus 71 ------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (154)
.....+...+. ++++++.++++++.|+.|++||+++++.+..+.+|...+ ..++|+| ++.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~v~----~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v--~~~~~~~-~~~~ 324 (464)
T 3v7d_B 252 VFHTPEENPYFVGVLRGHMASVR----TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRI--YSTIYDH-ERKR 324 (464)
T ss_dssp EESCGGGCTTEEEEECCCSSCEE----EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCE--EEEEEET-TTTE
T ss_pred EeeccCCCeEEEEEccCccceEE----EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCE--EEEEEcC-CCCE
Confidence 11111121222 346789999999999999999999999999998765544 5789999 7899
Q ss_pred EEEEcCCCeEEEeeCC
Q 038702 139 LAGATGGGQVYVWTSD 154 (154)
Q Consensus 139 l~~~~~d~~i~~wd~~ 154 (154)
+++|+.||.|++||++
T Consensus 325 l~sg~~dg~i~vwd~~ 340 (464)
T 3v7d_B 325 CISASMDTTIRIWDLE 340 (464)
T ss_dssp EEEEETTSCEEEEETT
T ss_pred EEEEeCCCcEEEEECC
Confidence 9999999999999973
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-23 Score=138.96 Aligned_cols=142 Identities=14% Similarity=0.111 Sum_probs=113.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|++|+.||.|++||+.+++. ...+.+|...|.+++| +++.+++++.|+.|++||++.......... .+..
T Consensus 149 l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~-- 218 (401)
T 4aez_A 149 LSVGLGNGLVDIYDVESQTK----LRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQ--GHSS-- 218 (401)
T ss_dssp EEEEETTSCEEEEETTTCCE----EEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEE--CCSS--
T ss_pred EEEECCCCeEEEEECcCCeE----EEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEc--CCCC--
Confidence 57899999999999987663 4444589999999999 567999999999999999985443322211 1112
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEc--CCCeEEEeeCC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT--GGGQVYVWTSD 154 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~d~~i~~wd~~ 154 (154)
.+..++|+|++.+|++++.|+.|++||+++++.+..+..|...+ .+++|+|....++++++ .|+.|++||++
T Consensus 219 ~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v--~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~ 292 (401)
T 4aez_A 219 EVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAV--KAVAWCPWQSNLLATGGGTMDKQIHFWNAA 292 (401)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCC--CEEEECTTSTTEEEEECCTTTCEEEEEETT
T ss_pred CeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceE--EEEEECCCCCCEEEEecCCCCCEEEEEECC
Confidence 23467899999999999999999999999999888887665544 57899996667888865 89999999973
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-23 Score=138.05 Aligned_cols=145 Identities=17% Similarity=0.283 Sum_probs=114.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCcee---------ecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKV---------LSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMI 70 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~---------~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~ 70 (154)
|++|+.||.|++||+.+........... .+|...|.+++|+| ++++|++++.|+.|++||+.+.+....+
T Consensus 59 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 138 (408)
T 4a11_B 59 MLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVF 138 (408)
T ss_dssp EEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceec
Confidence 5789999999999998765421100000 14999999999999 7889999999999999999988776655
Q ss_pred eecCCCCceEeEEEEEEcC---CCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCe
Q 038702 71 HHNNQTGRWISSFRAIWGW---DDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQ 147 (154)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 147 (154)
.+.. ....+.++| ++.++++++.|+.|++||+++++.+..+..|...+ .+++|+|....+|++++.||.
T Consensus 139 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v--~~~~~~~~~~~ll~~~~~dg~ 210 (408)
T 4a11_B 139 NFEE------TVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEI--LAVSWSPRYDYILATASADSR 210 (408)
T ss_dssp ECSS------CEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCE--EEEEECSSCTTEEEEEETTSC
T ss_pred cCCC------ceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcE--EEEEECCCCCcEEEEEcCCCc
Confidence 5332 123556777 45599999999999999999999998888765544 578999944347999999999
Q ss_pred EEEeeC
Q 038702 148 VYVWTS 153 (154)
Q Consensus 148 i~~wd~ 153 (154)
|++||+
T Consensus 211 i~i~d~ 216 (408)
T 4a11_B 211 VKLWDV 216 (408)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 999997
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-23 Score=134.15 Aligned_cols=137 Identities=15% Similarity=0.106 Sum_probs=109.8
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeec-ccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLS-HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
+++++.|+.|++||.... ...+.. |...+.+++|+|++. +++++.|+.|++||+++.+....+... ..
T Consensus 158 l~~~~~d~~i~i~d~~~~------~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~---~~- 226 (313)
T 3odt_A 158 FLTASADKTIKLWQNDKV------IKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGH---ES- 226 (313)
T ss_dssp EEEEETTSCEEEEETTEE------EEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECC---SS-
T ss_pred EEEEECCCCEEEEecCce------EEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcC---Cc-
Confidence 478999999999994321 233334 899999999999998 999999999999999987766554321 11
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
....++|+|++ .+++++.|+.|++||+++++.+..+..+...+ ..++|+| ++. +++++.||.|++||++
T Consensus 227 -~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i--~~~~~~~-~~~-~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 227 -FVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISI--WSVDCMS-NGD-IIVGSSDNLVRIFSQE 295 (313)
T ss_dssp -CEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCE--EEEEECT-TSC-EEEEETTSCEEEEESC
T ss_pred -eEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceE--EEEEEcc-CCC-EEEEeCCCcEEEEeCC
Confidence 24467899999 68899999999999999999999998765443 6789999 656 6679999999999974
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-24 Score=151.33 Aligned_cols=147 Identities=19% Similarity=0.200 Sum_probs=113.6
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCC--CCEEEEeeCCCeEEEEeccccccceeEeecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPS--GSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (154)
|++|+.||.|++||+.++... ......+|...|.+++|+|+ ++.+++++.||.|++||+++........... +..
T Consensus 70 l~s~s~Dg~I~vwd~~~~~~~--~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~-~~~ 146 (753)
T 3jro_A 70 LASCSYDGKVLIWKEENGRWS--QIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA-HAI 146 (753)
T ss_dssp EEEEETTSCEEEEEEETTEEE--EEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEEC-CSS
T ss_pred EEEEeCCCeEEEEECCCCccc--ccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeec-CCC
Confidence 578999999999999876410 03344589999999999998 9999999999999999998874433222111 111
Q ss_pred eEeEEEEEEcC-------------CCcEEEEEccCCeEEEecCCCc----cceeEEeCCCcCCcceEEEecCCC--ccEE
Q 038702 79 WISSFRAIWGW-------------DDSCIFIGNMTRTVEVISPAQR----RSVATLQSPYISAIPCRFHAHPHQ--VGTL 139 (154)
Q Consensus 79 ~~~~~~~~~~~-------------~~~~l~~~~~d~~i~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~~l 139 (154)
.+..++|+| ++.++++++.||.|++||++++ .....+.+|...+ .+++|+|.. +.+|
T Consensus 147 --~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V--~~l~~sp~~~~~~~l 222 (753)
T 3jro_A 147 --GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV--RDVAWSPTVLLRSYL 222 (753)
T ss_dssp --CEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE--EEEEECCCCSSSEEE
T ss_pred --ceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcE--EEEEeccCCCCCCEE
Confidence 234678998 5899999999999999999876 3445566555443 688999932 8999
Q ss_pred EEEcCCCeEEEeeCC
Q 038702 140 AGATGGGQVYVWTSD 154 (154)
Q Consensus 140 ~~~~~d~~i~~wd~~ 154 (154)
++++.||.|++||+.
T Consensus 223 ~s~s~Dg~I~iwd~~ 237 (753)
T 3jro_A 223 ASVSQDRTCIIWTQD 237 (753)
T ss_dssp EEEESSSCEEEEEES
T ss_pred EEEecCCEEEEecCC
Confidence 999999999999963
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=6e-24 Score=149.62 Aligned_cols=146 Identities=17% Similarity=0.252 Sum_probs=111.4
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCC--CCEEEEeeCCCeEEEEeccccccceeEeecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPS--GSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (154)
|++|+.||.|++||+...... ....+.+|.++|.+++|+|+ +++|++++.||.|++||+.+.......... .+..
T Consensus 24 latg~~dg~I~vwd~~~~~~~--~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~-~h~~ 100 (753)
T 3jro_A 24 LATCSSDKTIKIFEVEGETHK--LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHA-VHSA 100 (753)
T ss_dssp EEEEETTTEEEEEEEETTEEE--EEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEEC-CCSS
T ss_pred EEEEECCCcEEEEecCCCCCc--cceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCccccccccc-CCCC
Confidence 578999999999999743210 02334489999999999987 999999999999999999887532222211 1222
Q ss_pred eEeEEEEEEcCC--CcEEEEEccCCeEEEecCCCccc--eeEEeCCCcCCcceEEEecCC------------CccEEEEE
Q 038702 79 WISSFRAIWGWD--DSCIFIGNMTRTVEVISPAQRRS--VATLQSPYISAIPCRFHAHPH------------QVGTLAGA 142 (154)
Q Consensus 79 ~~~~~~~~~~~~--~~~l~~~~~d~~i~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~------------~~~~l~~~ 142 (154)
.+..++|+|+ +.++++++.||.|++||++++.. ...+.+|...+ ..++|+|. ++.++++|
T Consensus 101 --~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v--~~l~~~p~~~~~~~~~~~~~d~~~l~sg 176 (753)
T 3jro_A 101 --SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGV--NSASWAPATIEEDGEHNGTKESRKFVTG 176 (753)
T ss_dssp --CEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCE--EEEEECCCC---------CGGGCCEEEE
T ss_pred --CeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCce--EEEEecCcccccccccccCCCCCEEEEE
Confidence 2446789999 99999999999999999998733 34444444333 67899984 47899999
Q ss_pred cCCCeEEEeeC
Q 038702 143 TGGGQVYVWTS 153 (154)
Q Consensus 143 ~~d~~i~~wd~ 153 (154)
+.||.|++||+
T Consensus 177 s~dg~I~iwd~ 187 (753)
T 3jro_A 177 GADNLVKIWKY 187 (753)
T ss_dssp ETTSCEEEEEE
T ss_pred ECCCeEEEEec
Confidence 99999999986
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-23 Score=134.59 Aligned_cols=143 Identities=11% Similarity=0.031 Sum_probs=112.3
Q ss_pred CeeecCCCcEEEEEccC---------CCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccc-cccceeE
Q 038702 1 MATSSTDGTACIWDLRS---------MATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN-FENTAMI 70 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~---------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~-~~~~~~~ 70 (154)
|++++.|+.|++||++. .+ ......|...|.+++|+|++ +++++.|+.|++||+++ .......
T Consensus 115 l~s~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~ 187 (342)
T 1yfq_A 115 LIAASWDGLIEVIDPRNYGDGVIAVKNL-----NSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTI 187 (342)
T ss_dssp EEEEETTSEEEEECHHHHTTBCEEEEES-----CSSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEE
T ss_pred EEEEcCCCeEEEEcccccccccccccCC-----eeeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCcccccccee
Confidence 57899999999999986 44 23334588999999999887 99999999999999998 5443222
Q ss_pred eecCCCCceEeEEEEEEcC-CCcEEEEEccCCeEEEecCCCc------cceeEEeCCCc-------CCcceEEEecCCCc
Q 038702 71 HHNNQTGRWISSFRAIWGW-DDSCIFIGNMTRTVEVISPAQR------RSVATLQSPYI-------SAIPCRFHAHPHQV 136 (154)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~------~~~~~~~~~~~-------~~~~~~~~~~~~~~ 136 (154)
... .... ....++|+| ++.++++++.||.+++|++... +....+..+.. ......++|+| ++
T Consensus 188 ~~~-~~~~--~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~ 263 (342)
T 1yfq_A 188 EES-GLKY--QIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-RH 263 (342)
T ss_dssp EEC-SCSS--CEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT-TT
T ss_pred eec-CCCC--ceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcC-CC
Confidence 211 1122 234678999 9999999999999999999876 77788877644 11336889999 78
Q ss_pred cEEEEEcCCCeEEEeeCC
Q 038702 137 GTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 137 ~~l~~~~~d~~i~~wd~~ 154 (154)
.+|++++.||.|++||++
T Consensus 264 ~~l~~~~~dg~i~vwd~~ 281 (342)
T 1yfq_A 264 KFLYTAGSDGIISCWNLQ 281 (342)
T ss_dssp CCEEEEETTSCEEEEETT
T ss_pred CEEEEecCCceEEEEcCc
Confidence 899999999999999974
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.2e-23 Score=138.62 Aligned_cols=138 Identities=14% Similarity=0.139 Sum_probs=108.9
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
+++|+.|+.|++||+++.+. ...+.+|...|.+++|+|+++.+++++.|+.|++||+++++....+.. +...+
T Consensus 283 l~~~~~d~~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~---h~~~v 355 (464)
T 3v7d_B 283 VVSGSYDNTLIVWDVAQMKC----LYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG---HTALV 355 (464)
T ss_dssp EEEEETTSCEEEEETTTTEE----EEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECC---CSSCE
T ss_pred EEEEeCCCeEEEEECCCCcE----EEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC---CCCcE
Confidence 47899999999999987663 444458999999999999999999999999999999998776554432 22223
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
. .+.|+ +.++++++.||.|++||+++++...... +.... ..++++| ++.++++++ |+.|++||++
T Consensus 356 ~--~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~--~~~~~-~~~~~~~-~~~~l~~~~-dg~i~iwd~~ 420 (464)
T 3v7d_B 356 G--LLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH--HTNLS-AITTFYV-SDNILVSGS-ENQFNIYNLR 420 (464)
T ss_dssp E--EEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE--CTTCC-CEEEEEE-CSSEEEEEE-TTEEEEEETT
T ss_pred E--EEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec--CCCCc-cEEEEEe-CCCEEEEec-CCeEEEEECC
Confidence 3 44565 6899999999999999999887666654 22222 4567888 778999888 8999999973
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-23 Score=139.99 Aligned_cols=137 Identities=14% Similarity=0.092 Sum_probs=101.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccC-----CeEEEEEcCCCCEEEEeeCCCeEEEEecccccc-------ce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKR-----AVHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN-------TA 68 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~-------~~ 68 (154)
||+++.||.|++||... ......|.. .+.+++|||+|++|++|+.||+|++||+.++.. ..
T Consensus 100 LAs~s~dg~V~iwd~~~-------~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ 172 (588)
T 2j04_A 100 MAVLSNNGNVSVFKDNK-------MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFES 172 (588)
T ss_dssp EEEEETTSCEEEEETTE-------EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEE
T ss_pred EEEEeCCCcEEEEeCCc-------eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeee
Confidence 58899999999999543 222223554 599999999999999999999999999998753 11
Q ss_pred eE-eecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccce---eEEe-CCCcCCcceEEEecCCCccEEEEEc
Q 038702 69 MI-HHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSV---ATLQ-SPYISAIPCRFHAHPHQVGTLAGAT 143 (154)
Q Consensus 69 ~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~ 143 (154)
.+ .+...+.. .+.+++|+|++ +++++.|+.+++||+..++.. .++. +|...+ .+++|+ ++.|++++
T Consensus 173 ti~~~~~gh~~--~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V--~svaFs---g~~LASa~ 243 (588)
T 2j04_A 173 SIRLSDAGSKD--WVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKI--TDLKIV---DYKVVLTC 243 (588)
T ss_dssp EEECSCTTCCC--CEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCC--CCEEEE---TTEEEEEC
T ss_pred eeecccccccc--cEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcE--EEEEEE---CCEEEEEe
Confidence 11 11222233 45577999999 888889999999999887742 4564 444334 567787 37888887
Q ss_pred CCCeEEEeeCC
Q 038702 144 GGGQVYVWTSD 154 (154)
Q Consensus 144 ~d~~i~~wd~~ 154 (154)
+++|++||++
T Consensus 244 -~~tIkLWd~~ 253 (588)
T 2j04_A 244 -PGYVHKIDLK 253 (588)
T ss_dssp -SSEEEEEETT
T ss_pred -CCeEEEEECC
Confidence 6999999974
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.2e-23 Score=146.45 Aligned_cols=144 Identities=17% Similarity=0.141 Sum_probs=115.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccc-eeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT-AMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~-~~~~~~~~~~~~ 79 (154)
|++|+.||.|++||+.+++. ...+.+|.+.|.+++|+|++++|++++.|+.|++||+++.... ..+.. +..
T Consensus 70 l~~~~~dg~i~vw~~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~---~~~- 141 (814)
T 3mkq_A 70 IIVGSDDFRIRVFNYNTGEK----VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG---HEH- 141 (814)
T ss_dssp EEEEETTSEEEEEETTTCCE----EEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEEC---CSS-
T ss_pred EEEEeCCCeEEEEECCCCcE----EEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcC---CCC-
Confidence 57899999999999988763 4455589999999999999999999999999999999876332 22221 111
Q ss_pred EeEEEEEEcC-CCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCC-CccEEEEEcCCCeEEEeeCC
Q 038702 80 ISSFRAIWGW-DDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPH-QVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 80 ~~~~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~~wd~~ 154 (154)
....++|+| ++..+++++.||.|++||+.+++....+..++...+ ..++|+|. ++.+|++++.||.|++||++
T Consensus 142 -~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 216 (814)
T 3mkq_A 142 -FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV-NYVDYYPLPDKPYMITASDDLTIKIWDYQ 216 (814)
T ss_dssp -CEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCC-CEEEECCSTTCCEEEEECTTSEEEEEETT
T ss_pred -cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCE-EEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence 244678999 889999999999999999999888888876653433 46777762 56799999999999999963
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.9e-24 Score=140.69 Aligned_cols=148 Identities=14% Similarity=0.085 Sum_probs=95.3
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCC-CEEEEeeCCCeEEEEeccccccceeEeec------
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSG-SSLATTSFDDTIGIWSGVNFENTAMIHHN------ 73 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~~~~~~~~~~~~~~~~~------ 73 (154)
|++|+.|++|+|||+.+... .....+|..++.+++|+|++ ++|++++.|++|++||+++.+........
T Consensus 159 las~s~D~tv~~Wd~~~~~~----~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~ 234 (393)
T 4gq1_A 159 IASVGDDCTLIIWRLTDEGP----ILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNP 234 (393)
T ss_dssp EEEEETTSEEEEEEEETTEE----EEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCC
T ss_pred EEEEECCCeEEEEECCCCce----eeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccc
Confidence 58999999999999987664 56667999999999999987 58999999999999999876543221100
Q ss_pred ----------------CCCCceEeEEEEEE-cCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCC------------
Q 038702 74 ----------------NQTGRWISSFRAIW-GWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISA------------ 124 (154)
Q Consensus 74 ----------------~~~~~~~~~~~~~~-~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~------------ 124 (154)
..+...+ ..+.| .++++.+++++.|+.+++||+..++....+..+....
T Consensus 235 ~~~s~~~~~~~~~~~~~~~~~~v--~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 312 (393)
T 4gq1_A 235 WLLTLNTLPLVNTCHSSGIASSL--ANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGI 312 (393)
T ss_dssp CSEEEESGGGC------CCSSSC--SEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEE
T ss_pred eEEecccccceeeeecccccccc--eeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccc
Confidence 0011111 23445 4899999999999999999998776555443321111
Q ss_pred ----cceEEEecCC-CccEEEEEcCCCeEEEeeCC
Q 038702 125 ----IPCRFHAHPH-QVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 125 ----~~~~~~~~~~-~~~~l~~~~~d~~i~~wd~~ 154 (154)
......++|. ++.++++|+.||+|++||++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~ 347 (393)
T 4gq1_A 313 SLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTY 347 (393)
T ss_dssp CSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETT
T ss_pred cccCcceeEEEccCCCCEEEEEECCCCEEEEEECC
Confidence 0012234433 44467788899999999974
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.7e-23 Score=137.19 Aligned_cols=147 Identities=10% Similarity=0.017 Sum_probs=114.6
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCC---CCEEEEeeCCCeEEEEeccccccceeEeecCCCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPS---GSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTG 77 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~ 77 (154)
|++|+.|+.|++|++............+.+|...|.+++|+|+ +++|++++.|+.|++||+++......+.. .+.
T Consensus 164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~--~h~ 241 (450)
T 2vdu_B 164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLF--GHK 241 (450)
T ss_dssp EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECC--CCS
T ss_pred EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeec--CCC
Confidence 4788999999999998765421012245589999999999999 99999999999999999988766544221 112
Q ss_pred ceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCC-----------------------cCCcceEEEecCC
Q 038702 78 RWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPY-----------------------ISAIPCRFHAHPH 134 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~ 134 (154)
. .+..++|+ ++.+|++++.|+.|++||+++++.+..+..+. .......++++|
T Consensus 242 ~--~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~- 317 (450)
T 2vdu_B 242 H--FVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK- 317 (450)
T ss_dssp S--CEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS-
T ss_pred C--ceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC-
Confidence 2 23467899 99999999999999999999999888876321 112336789999
Q ss_pred CccEEEEEc-CCCeEEEeeC
Q 038702 135 QVGTLAGAT-GGGQVYVWTS 153 (154)
Q Consensus 135 ~~~~l~~~~-~d~~i~~wd~ 153 (154)
++.+|++++ .|+.|++||+
T Consensus 318 ~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 318 NLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp SSSEEEEEETTCSEEEEEEE
T ss_pred CCCEEEEEECCCCeEEEEEe
Confidence 778888888 8999999997
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.4e-23 Score=130.30 Aligned_cols=138 Identities=16% Similarity=0.239 Sum_probs=106.8
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCce--eecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTK--VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
++.+.|++|+|||+.+++. ... ..+|...|.+++|+|++++|++|+.|++|++||+++++........ ...
T Consensus 39 lAvg~D~tV~iWd~~tg~~----~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h---~~~ 111 (318)
T 4ggc_A 39 LAVALDNSVYLWSASSGDI----LQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSH---SAR 111 (318)
T ss_dssp EEEEETTEEEEEETTTCCE----EEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC---SSC
T ss_pred EEEEeCCEEEEEECCCCCE----EEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCc---cce
Confidence 3445699999999988763 222 2368889999999999999999999999999999988766544321 111
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCcc-ceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRR-SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+ ..+++++..+++++.++.+++|+..... .+..+.+|.... ..+.+.+ ++.+|++++.|+.|++||+
T Consensus 112 ~----~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~l~s~~~d~~i~iwd~ 179 (318)
T 4ggc_A 112 V----GSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEV--CGLRWAP-DGRHLASGGNDNLVNVWPS 179 (318)
T ss_dssp E----EEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCE--EEEEECT-TSSEEEEEETTSCEEEEES
T ss_pred E----EEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCce--EEEEEcC-CCCEEEEEecCcceeEEEC
Confidence 2 2356678899999999999999988664 445566555444 5678888 7899999999999999997
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.8e-23 Score=130.68 Aligned_cols=141 Identities=16% Similarity=0.150 Sum_probs=109.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|++|+.||.|++||+.+... ......|...|.+++|+|+++++++++.|+.+++|++..............+...+
T Consensus 32 l~s~~~dg~v~vw~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i 107 (313)
T 3odt_A 32 VASVSRDGTVRLWSKDDQWL----GTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNV 107 (313)
T ss_dssp EEEEETTSEEEEEEESSSEE----EEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCE
T ss_pred EEEEEcCCcEEEEECCCCEE----EEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCE
Confidence 57899999999999977653 44455899999999999999999999999999999998765333222222233333
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
. .+.| ++.++++++.|+.|++|| .++.+..+..+.... ..+.+.|.+++++++++.|+.|++||.
T Consensus 108 ~--~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~~~~~d~~i~i~d~ 172 (313)
T 3odt_A 108 C--SLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASV--WDAKVVSFSENKFLTASADKTIKLWQN 172 (313)
T ss_dssp E--EEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCE--EEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred E--EEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCce--eEEEEccCCCCEEEEEECCCCEEEEec
Confidence 3 4456 678999999999999999 666677777665444 467777767789999999999999985
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-23 Score=135.76 Aligned_cols=143 Identities=15% Similarity=0.122 Sum_probs=112.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEE--cCCCCEEEEeeCCCeEEEEeccccccceeEeecC----
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYF--SPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNN---- 74 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~---- 74 (154)
|++|+.||.|++||+.+.+ .....+|...|.+++| +|++++|++++.|+.|++||+++.+....+....
T Consensus 101 l~s~~~dg~v~iwd~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 175 (368)
T 3mmy_A 101 VFTASCDKTAKMWDLSSNQ-----AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYC 175 (368)
T ss_dssp EEEEETTSEEEEEETTTTE-----EEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEE
T ss_pred EEEEcCCCcEEEEEcCCCC-----ceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceE
Confidence 5789999999999998765 5566789999999999 8899999999999999999998654321111000
Q ss_pred ----------------------------------------------------------------------C---------
Q 038702 75 ----------------------------------------------------------------------Q--------- 75 (154)
Q Consensus 75 ----------------------------------------------------------------------~--------- 75 (154)
.
T Consensus 176 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~ 255 (368)
T 3mmy_A 176 ADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNF 255 (368)
T ss_dssp EEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSE
T ss_pred EEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccce
Confidence 0
Q ss_pred --CCceE------------eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEE
Q 038702 76 --TGRWI------------SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAG 141 (154)
Q Consensus 76 --~~~~~------------~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 141 (154)
..+.. .+..++|+|++++|++++.||.|++||+++++.+..+..|...+ ..++|+| ++.+|++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v--~~~~~s~-~g~~l~~ 332 (368)
T 3mmy_A 256 TFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPI--SACCFNH-NGNIFAY 332 (368)
T ss_dssp EEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCE--EEEEECT-TSSCEEE
T ss_pred eeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCc--eEEEECC-CCCeEEE
Confidence 00000 24567899999999999999999999999999998888665444 6889999 8899999
Q ss_pred EcCCCeEEEe
Q 038702 142 ATGGGQVYVW 151 (154)
Q Consensus 142 ~~~d~~i~~w 151 (154)
++.|+..+.|
T Consensus 333 ~s~d~~~~~~ 342 (368)
T 3mmy_A 333 ASSYDWSKGH 342 (368)
T ss_dssp EECCCSTTCG
T ss_pred Eecccccccc
Confidence 9988754444
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-23 Score=134.98 Aligned_cols=142 Identities=13% Similarity=0.066 Sum_probs=109.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCC-EEEEeeCCCeEEEEec-cccccceeEeecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGS-SLATTSFDDTIGIWSG-VNFENTAMIHHNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~~~~ 78 (154)
|++++.|+.|++|++....... ......+|...|.+++|+|+++ +|++++.|+.|++||+ .+.+....... .+..
T Consensus 26 l~~~~~d~~v~iw~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~--~~~~ 102 (342)
T 1yfq_A 26 LLITSWDGSLTVYKFDIQAKNV-DLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNN--EANL 102 (342)
T ss_dssp EEEEETTSEEEEEEEETTTTEE-EEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSC--CCCS
T ss_pred EEEEcCCCeEEEEEeCCCCccc-cceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEecccc--CCCC
Confidence 5789999999999998765211 1234458999999999999999 9999999999999999 77655332220 0222
Q ss_pred eEeEEEEEEcCCCcEEEEEccCCeEEEecCCC---------ccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEE
Q 038702 79 WISSFRAIWGWDDSCIFIGNMTRTVEVISPAQ---------RRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVY 149 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 149 (154)
. +..++|+| +.++++++.|+.|++||+++ ++++..+. +... ...++++| +. +++++.|+.|+
T Consensus 103 ~--v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~--v~~~~~~~-~~--l~~~~~d~~i~ 173 (342)
T 1yfq_A 103 G--ICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNK--IFTMDTNS-SR--LIVGMNNSQVQ 173 (342)
T ss_dssp C--EEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCC--EEEEEECS-SE--EEEEESTTEEE
T ss_pred c--eEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCc--eEEEEecC-Cc--EEEEeCCCeEE
Confidence 2 34678999 99999999999999999998 77666665 3322 26788988 43 99999999999
Q ss_pred EeeCC
Q 038702 150 VWTSD 154 (154)
Q Consensus 150 ~wd~~ 154 (154)
+||++
T Consensus 174 i~d~~ 178 (342)
T 1yfq_A 174 WFRLP 178 (342)
T ss_dssp EEESS
T ss_pred EEECC
Confidence 99974
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=7.3e-23 Score=136.12 Aligned_cols=139 Identities=18% Similarity=0.263 Sum_probs=108.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|++|+.||.|++||+.+++. ...+.+|...|.+++|+ +..+++++.|+.|++||+++............+...+
T Consensus 186 l~sg~~dg~i~vwd~~~~~~----~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 259 (435)
T 1p22_A 186 IITGSSDSTVRVWDVNTGEM----LNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 259 (435)
T ss_dssp EEEEETTSCEEEEESSSCCE----EEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred EEEEcCCCeEEEEECCCCcE----EEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcE
Confidence 57899999999999988763 44455899999999996 4699999999999999999877654333222333334
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
. .+.| ++.++++++.|+.|++||+++++.+..+.+|...+ .++.++ +.++++|+.||.|++||+.
T Consensus 260 ~--~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v--~~~~~~---~~~l~~g~~dg~i~iwd~~ 324 (435)
T 1p22_A 260 N--VVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI--ACLQYR---DRLVVSGSSDNTIRLWDIE 324 (435)
T ss_dssp E--EEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCE--EEEEEE---TTEEEEEETTSCEEEEETT
T ss_pred E--EEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcE--EEEEeC---CCEEEEEeCCCeEEEEECC
Confidence 3 3344 78899999999999999999999998888766554 355664 4789999999999999973
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=9e-23 Score=149.63 Aligned_cols=146 Identities=22% Similarity=0.268 Sum_probs=117.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecC------
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNN------ 74 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~------ 74 (154)
+++|+.|+.|++||+.++.. ...+.+|.+.|.+++|+|+++.+++++.||.|++||+++...........
T Consensus 716 l~sg~~d~~v~vwd~~~~~~----~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 791 (1249)
T 3sfz_A 716 LATGSNDFFLKLWDLNQKEC----RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSE 791 (1249)
T ss_dssp EEEEETTSCEEEEETTSSSE----EEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC----
T ss_pred EEEEeCCCeEEEEECCCcch----hheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccC
Confidence 46899999999999988763 44455999999999999999999999999999999998764332211000
Q ss_pred ----------------C-------------------C---------CceEeEEEEEEcCCCcEEEEEccCCeEEEecCCC
Q 038702 75 ----------------Q-------------------T---------GRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQ 110 (154)
Q Consensus 75 ----------------~-------------------~---------~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 110 (154)
+ . ++......++|+|++.++++++.|+.|++||+.+
T Consensus 792 ~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~ 871 (1249)
T 3sfz_A 792 DPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDS 871 (1249)
T ss_dssp ----CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTT
T ss_pred CccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Confidence 0 0 0011122568999999999999999999999999
Q ss_pred ccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 111 RRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
++.+..+.+|...+ ..++|+| ++.+|++++.|+.|++||+
T Consensus 872 ~~~~~~~~~h~~~v--~~v~~sp-dg~~l~s~s~dg~v~vw~~ 911 (1249)
T 3sfz_A 872 RLKVADCRGHLSWV--HGVMFSP-DGSSFLTASDDQTIRVWET 911 (1249)
T ss_dssp TEEEEEECCCSSCE--EEEEECT-TSSEEEEEETTSCEEEEEH
T ss_pred CceeeecCCCccce--EEEEECC-CCCEEEEEeCCCeEEEEEc
Confidence 99998888776554 5789999 8899999999999999985
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-22 Score=133.56 Aligned_cols=139 Identities=16% Similarity=0.240 Sum_probs=106.8
Q ss_pred eecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeE
Q 038702 3 TSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISS 82 (154)
Q Consensus 3 ~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (154)
+.+.|++|+|||..+++.. ......+|...|++++|+|+|++|++|+.|+.|++||+++.+....... +...+.
T Consensus 120 Avgld~tV~lWd~~tg~~~--~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~---h~~~v~- 193 (420)
T 4gga_A 120 AVALDNSVYLWSASSGDIL--QLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS---HSARVG- 193 (420)
T ss_dssp EEEETTEEEEEETTTCCEE--EEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC---CSSCEE-
T ss_pred EEEeCCEEEEEECCCCCEE--EEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeC---CCCceE-
Confidence 4456999999999887630 0112236888999999999999999999999999999998876554431 222222
Q ss_pred EEEEEcCCCcEEEEEccCCeEEEecCCCc-cceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 83 FRAIWGWDDSCIFIGNMTRTVEVISPAQR-RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 83 ~~~~~~~~~~~l~~~~~d~~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
. +++++.++++|+.|+.+++||.... ..+..+.+|.... ..+.+.| ++.++++++.|+.+++||.
T Consensus 194 -~--~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~--~~~~~~~-~g~~l~s~~~D~~v~i~~~ 259 (420)
T 4gga_A 194 -S--LSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEV--CGLRWAP-DGRHLASGGNDNLVNVWPS 259 (420)
T ss_dssp -E--EEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCE--EEEEECT-TSSEEEEEETTSCEEEEES
T ss_pred -E--EeeCCCEEEEEeCCCceeEeeecccceeeEEecccccce--eeeeecC-CCCeeeeeeccccceEEee
Confidence 2 3456889999999999999998865 4456666665444 5788998 8899999999999999986
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-22 Score=133.79 Aligned_cols=138 Identities=19% Similarity=0.268 Sum_probs=109.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
+++|+.||.|++||+.+..... ......+|...|.+++| +++++++++.|+.|++||+++.+....+.. +...+
T Consensus 226 l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~~~~v 299 (435)
T 1p22_A 226 MVTCSKDRSIAVWDMASPTDIT-LRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNG---HKRGI 299 (435)
T ss_dssp EEEEETTSCEEEEECSSSSCCE-EEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEEC---CSSCE
T ss_pred EEEeeCCCcEEEEeCCCCCCce-eeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcC---CCCcE
Confidence 5789999999999998765310 01234489999999999 789999999999999999998876654432 12223
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
. .+.+ ++.++++++.||.|++||+++++.+..+.+|...+ .++++ ++.+|++|+.||.|++||+
T Consensus 300 ~--~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v--~~~~~---~~~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 300 A--CLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELV--RCIRF---DNKRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp E--EEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCE--EEEEC---CSSEEEEEETTSCEEEEEH
T ss_pred E--EEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcE--EEEEe---cCCEEEEEeCCCcEEEEEC
Confidence 3 3444 57899999999999999999999999998776554 45666 4589999999999999996
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4.3e-23 Score=137.33 Aligned_cols=147 Identities=13% Similarity=0.171 Sum_probs=105.4
Q ss_pred eeecCCCcEEEEEccCCCCC-----C------CCCceeecccCCeEEEEEcCCCCEEE----EeeCCCeEEEEecccc--
Q 038702 2 ATSSTDGTACIWDLRSMATD-----K------PEPTKVLSHKRAVHSAYFSPSGSSLA----TTSFDDTIGIWSGVNF-- 64 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~-----~------~~~~~~~~~~~~v~~~~~~~~~~~l~----~~~~d~~v~~~~~~~~-- 64 (154)
++++.|+ +++|+....... . ........+...|.+++|+|++++|+ +++.|+.|++||+++.
T Consensus 52 ~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~ 130 (434)
T 2oit_A 52 FAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSN 130 (434)
T ss_dssp EEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHC
T ss_pred EEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEcccccc
Confidence 5566676 888876432110 0 00112235677899999999999999 7889999999999765
Q ss_pred ------ccceeEeecCCCCceEeEEEEEEcCC-CcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCcc
Q 038702 65 ------ENTAMIHHNNQTGRWISSFRAIWGWD-DSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVG 137 (154)
Q Consensus 65 ------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (154)
+..........+.. .+..++|+|+ +.+|++++.||+|++||++++..+....+|...+ .+++|+| ++.
T Consensus 131 ~~~~~~~~~~~~~~~~~h~~--~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v--~~v~wsp-dg~ 205 (434)
T 2oit_A 131 EAKQQKRPFAYHKLLKDAGG--MVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAV--TSVCWSP-KGK 205 (434)
T ss_dssp TTCSSCCCSEEEECCCSGGG--SEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCE--EEEEECT-TSS
T ss_pred CCcCCcceeeeeeccCCCCC--ceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCce--eEEEEcC-CCC
Confidence 11111222112222 3446789998 7899999999999999999887665555443333 6899999 789
Q ss_pred EEEEEcCCCeEEEeeCC
Q 038702 138 TLAGATGGGQVYVWTSD 154 (154)
Q Consensus 138 ~l~~~~~d~~i~~wd~~ 154 (154)
+|++|+.||+|++||++
T Consensus 206 ~lasgs~dg~v~iwd~~ 222 (434)
T 2oit_A 206 QLAVGKQNGTVVQYLPT 222 (434)
T ss_dssp CEEEEETTSCEEEECTT
T ss_pred EEEEEcCCCcEEEEccC
Confidence 99999999999999973
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.2e-23 Score=138.45 Aligned_cols=116 Identities=14% Similarity=0.130 Sum_probs=89.0
Q ss_pred cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCC-CCceEeEEEEEEcCCCcEEEEEccCCeEEEecC
Q 038702 30 SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQ-TGRWISSFRAIWGWDDSCIFIGNMTRTVEVISP 108 (154)
Q Consensus 30 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~ 108 (154)
.|...|.+++|+|+|++|++++.||.|++||.+. ....+.+... ....+ .+++|+|+|++|++|+.||+|++||+
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv--~svafSPDG~~LAsgs~DGtVkIWd~ 158 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTY--HCFEWNPIESSIVVGNEDGELQFFSI 158 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCE--EEEEECSSSSCEEEEETTSEEEEEEC
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccE--EEEEEcCCCCEEEEEcCCCEEEEEEC
Confidence 5678999999999999999999999999999654 2222121110 11123 36799999999999999999999999
Q ss_pred CCccc-------eeEEe----CCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 109 AQRRS-------VATLQ----SPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 109 ~~~~~-------~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.+++. +.++. +|. . ...+++|+| ++ +++++.|++|++||++
T Consensus 159 ~~~~l~~~~~i~l~ti~~~~~gh~-~-~V~sVawSP-dg--Laass~D~tVrlWd~~ 210 (588)
T 2j04_A 159 RKNSENTPEFYFESSIRLSDAGSK-D-WVTHIVWYE-DV--LVAALSNNSVFSMTVS 210 (588)
T ss_dssp CCCTTTCCCCEEEEEEECSCTTCC-C-CEEEEEEET-TE--EEEEETTCCEEEECCC
T ss_pred CCCccccccceeeeeeeccccccc-c-cEEEEEEcC-Cc--EEEEeCCCeEEEEECC
Confidence 98763 56663 333 2 336899999 76 8888999999999974
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-22 Score=128.47 Aligned_cols=138 Identities=12% Similarity=0.054 Sum_probs=99.6
Q ss_pred CCCcEEEEEccC-CCCCCCCCceeecccCCeEEEEEcC---CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEe
Q 038702 6 TDGTACIWDLRS-MATDKPEPTKVLSHKRAVHSAYFSP---SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWIS 81 (154)
Q Consensus 6 ~d~~v~vw~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (154)
.|+.|++|++.. ++. ......|...+..++|+| ++..|++++.|++|++||+.+++....+...... ...
T Consensus 155 ~d~~V~~~~~s~dG~~----~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~--v~~ 228 (356)
T 2w18_A 155 SDQQVEVMTFAEDGGG----KENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSY--QAS 228 (356)
T ss_dssp TTCEEEEEEECTTSCE----EEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC-----CC
T ss_pred CCCcEEEEEECCCCce----eeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcc--eee
Confidence 599999999955 332 344558999999999999 7799999999999999999999877666421111 112
Q ss_pred EEEEEEcCCCcEE------------EEEccCCeEEEecCCCccceeEEe-----CCCcCCcceEEEecCCCccEEEEEcC
Q 038702 82 SFRAIWGWDDSCI------------FIGNMTRTVEVISPAQRRSVATLQ-----SPYISAIPCRFHAHPHQVGTLAGATG 144 (154)
Q Consensus 82 ~~~~~~~~~~~~l------------~~~~~d~~i~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~ 144 (154)
...++|+|++.++ ++|+.|++|++||..+++.+..+. +|.... ....+ .+.++++++.
T Consensus 229 v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~--lsg~~---sg~~lASgS~ 303 (356)
T 2w18_A 229 VCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRF--LEGDV---KDHCAAAILT 303 (356)
T ss_dssp CEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCE--EEEEE---ETTEEEEEET
T ss_pred eEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCccee--Ecccc---CCCEEEEEcC
Confidence 3356789999876 567889999999999998876652 332221 22233 2568999999
Q ss_pred CCeEEEeeCC
Q 038702 145 GGQVYVWTSD 154 (154)
Q Consensus 145 d~~i~~wd~~ 154 (154)
|++|++||++
T Consensus 304 DgTIkIWDl~ 313 (356)
T 2w18_A 304 SGTIAIWDLL 313 (356)
T ss_dssp TSCEEEEETT
T ss_pred CCcEEEEECC
Confidence 9999999984
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.2e-22 Score=131.92 Aligned_cols=136 Identities=14% Similarity=0.298 Sum_probs=103.6
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
+++|+.||.|++||+.+++. ...+.+|...|.+++| +++.+++++.|+.|++||+++.+....+. .+...+
T Consensus 212 l~s~s~dg~i~~wd~~~~~~----~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v 282 (445)
T 2ovr_B 212 VVSGSRDATLRVWDIETGQC----LHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQ---GHTNRV 282 (445)
T ss_dssp EEEEETTSEEEEEESSSCCE----EEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEEC---CCSSCE
T ss_pred EEEEeCCCEEEEEECCCCcE----EEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEec---CCCCce
Confidence 46788888888888877653 3444578888888888 67888889999999999988776554433 122223
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
..+.| ++.++++++.|+.|++||+++++.+..+.+|.... ..+.++ ++++++++.||.|++||++
T Consensus 283 --~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v--~~~~~~---~~~l~~~~~dg~i~vwd~~ 347 (445)
T 2ovr_B 283 --YSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT--SGMELK---DNILVSGNADSTVKIWDIK 347 (445)
T ss_dssp --EEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCE--EEEEEE---TTEEEEEETTSCEEEEETT
T ss_pred --EEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccE--EEEEEe---CCEEEEEeCCCeEEEEECC
Confidence 34455 78999999999999999999999999888765443 345554 4799999999999999973
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-21 Score=130.39 Aligned_cols=143 Identities=14% Similarity=0.172 Sum_probs=108.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
+++|+.|+.|++||+++++. ...+.+|...+.++.+ +++.+++++.||.|++||+++.+....+.....+...+
T Consensus 292 l~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 365 (445)
T 2ovr_B 292 VVSGSLDTSIRVWDVETGNC----IHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAV 365 (445)
T ss_dssp EEEEETTSCEEEEETTTCCE----EEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCE
T ss_pred EEEEeCCCeEEEEECCCCCE----EEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCE
Confidence 46788899999999887653 3444478888888877 46789999999999999998877665554322233333
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeC---CCcCCcceEEEecCCCccEEEEEcCCCe----EEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQS---PYISAIPCRFHAHPHQVGTLAGATGGGQ----VYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~d~~----i~~wd~ 153 (154)
. .++| ++.++++++.||.|++||+.+++.+..+.. ........+++|+| ++.++++|+.||+ |.+||+
T Consensus 366 ~--~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~la~~~~dg~~~~~l~v~df 440 (445)
T 2ovr_B 366 T--CLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDF 440 (445)
T ss_dssp E--EEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS-SEEEEEEECSSSSSCCEEEEEEC
T ss_pred E--EEEE--CCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecC-CEEEEEEcccCCCCccEEEEEEC
Confidence 3 4456 468999999999999999999998888731 11223347899999 8899999999997 999997
Q ss_pred C
Q 038702 154 D 154 (154)
Q Consensus 154 ~ 154 (154)
+
T Consensus 441 ~ 441 (445)
T 2ovr_B 441 D 441 (445)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.89 E-value=6.5e-22 Score=135.87 Aligned_cols=145 Identities=17% Similarity=0.182 Sum_probs=113.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccC---CeEEEEEcCC-CCEEEEeeCCCeEEEEeccccccceeEee-cCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKR---AVHSAYFSPS-GSSLATTSFDDTIGIWSGVNFENTAMIHH-NNQ 75 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~~~~~d~~v~~~~~~~~~~~~~~~~-~~~ 75 (154)
+++++.|+.|++||+.+.+. ...+.+|.. .|.+++|+|+ +++|++++.|+.|++||+++.+....+.. ...
T Consensus 176 l~~~~~d~~v~vwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 251 (615)
T 1pgu_A 176 SMTVGDDGSVVFYQGPPFKF----SASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEP 251 (615)
T ss_dssp EEEEETTTEEEEEETTTBEE----EEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBC
T ss_pred EEEEeCCCcEEEEeCCCcce----eeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccc
Confidence 47899999999999887663 344447888 9999999999 99999999999999999988776655411 001
Q ss_pred CCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCc--CCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 76 TGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYI--SAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+.. .+..++|+ ++.++++++.|+.|++||+++++.+..+..+.. ......+.+. ++.++++++.|+.|++||+
T Consensus 252 ~~~--~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~g~i~~~d~ 326 (615)
T 1pgu_A 252 VQG--GIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT--GNGRIISLSLDGTLNFYEL 326 (615)
T ss_dssp CCS--CEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE--ETTEEEEEETTSCEEEEET
T ss_pred cCC--ceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC--CCCeEEEEECCCCEEEEEC
Confidence 222 23467889 999999999999999999999999888876521 1222455554 5789999999999999997
Q ss_pred C
Q 038702 154 D 154 (154)
Q Consensus 154 ~ 154 (154)
.
T Consensus 327 ~ 327 (615)
T 1pgu_A 327 G 327 (615)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-21 Score=126.84 Aligned_cols=144 Identities=7% Similarity=0.026 Sum_probs=90.1
Q ss_pred eeecCCCcEEEEEccCCCCCCCC-----CceeecccCCeEEEEEcCCCCEEEE--eeCCCeEEEEeccccccceeEeecC
Q 038702 2 ATSSTDGTACIWDLRSMATDKPE-----PTKVLSHKRAVHSAYFSPSGSSLAT--TSFDDTIGIWSGVNFENTAMIHHNN 74 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~--~~~d~~v~~~~~~~~~~~~~~~~~~ 74 (154)
++++.|+.+++|++......... ......+...+.+++|+|+|+++++ ++.|++|++||+++.+....+.+..
T Consensus 98 ~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~ 177 (365)
T 4h5i_A 98 TQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRG 177 (365)
T ss_dssp HHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSS
T ss_pred EEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCC
Confidence 35678999999998765431000 0011134556899999999998765 4478999999999877665544322
Q ss_pred CCCceEeEEEEEEcCCCcEEEEEc-------------------------------------------cCC----eEEEec
Q 038702 75 QTGRWISSFRAIWGWDDSCIFIGN-------------------------------------------MTR----TVEVIS 107 (154)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~-------------------------------------------~d~----~i~i~~ 107 (154)
. +..++|+|+++++++++ .|+ .+++|+
T Consensus 178 ~------V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~ 251 (365)
T 4h5i_A 178 E------VKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKIS 251 (365)
T ss_dssp C------CCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEE
T ss_pred c------eEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecc
Confidence 1 12344555555555544 333 344444
Q ss_pred CCCccc----eeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 108 PAQRRS----VATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 108 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
+..... ...+.+|... ..+++|+| ++++|++|+.|++|++||++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~--V~~~~~Sp-dg~~lasgs~D~~V~iwd~~ 299 (365)
T 4h5i_A 252 IKSGNTSVLRSKQVTNRFKG--ITSMDVDM-KGELAVLASNDNSIALVKLK 299 (365)
T ss_dssp EETTEEEEEEEEEEESSCSC--EEEEEECT-TSCEEEEEETTSCEEEEETT
T ss_pred cccceecceeeeeecCCCCC--eEeEEECC-CCCceEEEcCCCEEEEEECC
Confidence 332221 1122223222 25789999 88999999999999999974
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.89 E-value=5.7e-21 Score=125.17 Aligned_cols=139 Identities=17% Similarity=0.191 Sum_probs=108.8
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEE-EEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSL-ATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
+++++.|+.|++||+.+++ ......+...+.+++|+|+++.+ ++++.|+.|++||+.+++....+....
T Consensus 5 ~vs~~~d~~v~v~d~~~~~-----~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~----- 74 (391)
T 1l0q_A 5 YIANSESDNISVIDVTSNK-----VTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS----- 74 (391)
T ss_dssp EEEETTTTEEEEEETTTTE-----EEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-----
T ss_pred EEEcCCCCEEEEEECCCCe-----EEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-----
Confidence 4789999999999998765 44445445568999999999976 677789999999998887665554332
Q ss_pred EeEEEEEEcCCCcEEE-EEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEE-EEEcCCCeEEEeeCC
Q 038702 80 ISSFRAIWGWDDSCIF-IGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTL-AGATGGGQVYVWTSD 154 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~-~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~d~~i~~wd~~ 154 (154)
....++|+|++++++ +++.++.|++||+.+++.+..+..+. . ...++|+| +++.+ ++++.|+.|++||+.
T Consensus 75 -~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~-~--~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~ 146 (391)
T 1l0q_A 75 -SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK-S--PLGLALSP-DGKKLYVTNNGDKTVSVINTV 146 (391)
T ss_dssp -SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-S--EEEEEECT-TSSEEEEEETTTTEEEEEETT
T ss_pred -CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC-C--cceEEECC-CCCEEEEEeCCCCEEEEEECC
Confidence 234678999999775 45567999999999999888777432 2 36789999 66655 788899999999973
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-21 Score=129.63 Aligned_cols=144 Identities=13% Similarity=0.082 Sum_probs=101.9
Q ss_pred eecCCCcEEEEEccCC-----CC-CCCCCcee-ecccCCeEEEEEcCC-CCEEEEeeCCCeEEEEeccccccceeEeecC
Q 038702 3 TSSTDGTACIWDLRSM-----AT-DKPEPTKV-LSHKRAVHSAYFSPS-GSSLATTSFDDTIGIWSGVNFENTAMIHHNN 74 (154)
Q Consensus 3 ~~~~d~~v~vw~~~~~-----~~-~~~~~~~~-~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~ 74 (154)
+|+.|+.|++||+.+. +. ........ .+|...|.+++|+|+ +++|++++.||+|++||+++.........
T Consensus 113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~-- 190 (434)
T 2oit_A 113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLP-- 190 (434)
T ss_dssp ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEEC--
T ss_pred ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccC--
Confidence 7889999999999764 11 00001222 269999999999997 88999999999999999998744322111
Q ss_pred CCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCc-----CCcceEEEecCCCccEEEE-EcCCC--
Q 038702 75 QTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYI-----SAIPCRFHAHPHQVGTLAG-ATGGG-- 146 (154)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~-~~~d~-- 146 (154)
+.. .+.+++|+|++++|++|+.||.|++||.+ ++....+..+.. .....+++|++ +..++++ .+.||
T Consensus 191 -~~~--~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~-~~~~l~~~~~~dg~~ 265 (434)
T 2oit_A 191 -STV--AVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIG-TYVFAIVYAAADGTL 265 (434)
T ss_dssp -GGG--CEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEE-TTEEEEEEEETTCCS
T ss_pred -CCC--ceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEec-CceEEEEEccCCCcc
Confidence 111 34467999999999999999999999998 555555554322 12347889998 5555543 33443
Q ss_pred ----eEEEeeC
Q 038702 147 ----QVYVWTS 153 (154)
Q Consensus 147 ----~i~~wd~ 153 (154)
.+++||+
T Consensus 266 ~~~~~v~i~~l 276 (434)
T 2oit_A 266 ETSPDVVMALL 276 (434)
T ss_dssp SSCCEEEEEEC
T ss_pred CCCCceEEEEe
Confidence 3889986
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.87 E-value=8.1e-20 Score=119.70 Aligned_cols=138 Identities=14% Similarity=0.126 Sum_probs=108.8
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEE-EEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSL-ATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
++++.|+.|++||+.+++ ......+...+.+++|+|+++.+ ++++.++.|++||+++.+......+..
T Consensus 132 ~~~~~~~~v~~~d~~~~~-----~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~------ 200 (391)
T 1l0q_A 132 VTNNGDKTVSVINTVTKA-----VINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA------ 200 (391)
T ss_dssp EEETTTTEEEEEETTTTE-----EEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS------
T ss_pred EEeCCCCEEEEEECCCCc-----EEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCC------
Confidence 578889999999998765 34444445667999999999877 577789999999999876655554322
Q ss_pred eEEEEEEcCCCcEEEEEc---cCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEE-EEEcCCCeEEEeeCC
Q 038702 81 SSFRAIWGWDDSCIFIGN---MTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTL-AGATGGGQVYVWTSD 154 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~---~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~d~~i~~wd~~ 154 (154)
....++|+|+++++++++ .++.|++||+++++.+..+..+.. ...++|+| +++++ ++++.|+.|++||++
T Consensus 201 ~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~---~~~~~~s~-dg~~l~~s~~~d~~v~v~d~~ 274 (391)
T 1l0q_A 201 APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD---PAGIAVTP-DGKKVYVALSFXNTVSVIDTA 274 (391)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSS---EEEEEECT-TSSEEEEEETTTTEEEEEETT
T ss_pred CccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCC---ccEEEEcc-CCCEEEEEcCCCCEEEEEECC
Confidence 234678999999998888 689999999999998888875432 35789999 66655 778899999999974
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.6e-20 Score=122.32 Aligned_cols=145 Identities=14% Similarity=0.142 Sum_probs=109.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCc-eeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPT-KVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
+++++.|+.|++||+.+++....... ...+|...|.+++|+|+++.+++++.|+.|++||+++.+....+.. +..
T Consensus 137 ~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~---~~~- 212 (433)
T 3bws_A 137 AIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDL---TGK- 212 (433)
T ss_dssp EEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEEC---SSS-
T ss_pred EEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcC---CCC-
Confidence 35678889999999987653100000 2237888999999999999999999999999999988766554431 111
Q ss_pred EeEEEEEEcCCCcEEE-EEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEc--------CCCeEEE
Q 038702 80 ISSFRAIWGWDDSCIF-IGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT--------GGGQVYV 150 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~-~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~d~~i~~ 150 (154)
....++|+|++++++ +++.++.|++||+++++.+..+..+. ....++++| +++++++++ .|+.|++
T Consensus 213 -~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~-~g~~l~~~~~~~~~~~~~dg~i~~ 287 (433)
T 3bws_A 213 -WSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIG---LPRGLLLSK-DGKELYIAQFSASNQESGGGRLGI 287 (433)
T ss_dssp -SEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCS---EEEEEEECT-TSSEEEEEEEESCTTCSCCEEEEE
T ss_pred -CeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCC---CceEEEEcC-CCCEEEEEECCCCccccCCCeEEE
Confidence 234668999998875 55589999999999998877776432 246789999 777887777 5889999
Q ss_pred eeCC
Q 038702 151 WTSD 154 (154)
Q Consensus 151 wd~~ 154 (154)
||++
T Consensus 288 ~d~~ 291 (433)
T 3bws_A 288 YSMD 291 (433)
T ss_dssp EETT
T ss_pred EECC
Confidence 9973
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-19 Score=119.49 Aligned_cols=141 Identities=9% Similarity=0.065 Sum_probs=107.5
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEE-EeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLA-TTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
+++++.|+.|++||+++++. ...+..|...+.+++|+|+++.++ +++.|+.|++||+++.+....+....
T Consensus 184 ~~s~~~d~~v~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~----- 254 (433)
T 3bws_A 184 WVSQMQANAVHVFDLKTLAY----KATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIG----- 254 (433)
T ss_dssp EEEEGGGTEEEEEETTTCCE----EEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCS-----
T ss_pred EEEECCCCEEEEEECCCceE----EEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCC-----
Confidence 46888999999999987653 344447889999999999999885 45579999999998776544333211
Q ss_pred EeEEEEEEcCCCcEEEEEc--------cCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEe
Q 038702 80 ISSFRAIWGWDDSCIFIGN--------MTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 151 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~--------~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w 151 (154)
....++|+|+++++++++ .|+.|++||+++++.+..+. +.. ....++|+|....++++++.|+.|++|
T Consensus 255 -~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~--~~~~~~~~~~g~~l~~~~~~~~~v~v~ 330 (433)
T 3bws_A 255 -LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPG--NKRHIVSGNTENKIYVSDMCCSKIEVY 330 (433)
T ss_dssp -EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEE--CEEEEEECSSTTEEEEEETTTTEEEEE
T ss_pred -CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCC--CcceEEECCCCCEEEEEecCCCEEEEE
Confidence 234678999999998888 48899999999988776663 222 235789999333466788999999999
Q ss_pred eCC
Q 038702 152 TSD 154 (154)
Q Consensus 152 d~~ 154 (154)
|++
T Consensus 331 d~~ 333 (433)
T 3bws_A 331 DLK 333 (433)
T ss_dssp ETT
T ss_pred ECC
Confidence 974
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.84 E-value=9.7e-19 Score=115.89 Aligned_cols=131 Identities=18% Similarity=0.101 Sum_probs=98.7
Q ss_pred CcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCC---eEEEEeccccccceeEeecCCCCceEeEEE
Q 038702 8 GTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDD---TIGIWSGVNFENTAMIHHNNQTGRWISSFR 84 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
+.|++||+.... ...+.+|...+.+++|+|+|+.|++++.++ .|++||+.+++......+.. ....
T Consensus 159 ~~i~i~d~~g~~-----~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~------~~~~ 227 (415)
T 2hqs_A 159 YELRVSDYDGYN-----QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR------HNGA 227 (415)
T ss_dssp EEEEEEETTSCS-----CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSS------CEEE
T ss_pred ceEEEEcCCCCC-----CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCC------cccC
Confidence 799999997533 556668999999999999999999999875 99999999877654433322 2346
Q ss_pred EEEcCCCcEEE-EEccCC--eEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcC-CC--eEEEeeC
Q 038702 85 AIWGWDDSCIF-IGNMTR--TVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATG-GG--QVYVWTS 153 (154)
Q Consensus 85 ~~~~~~~~~l~-~~~~d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~--~i~~wd~ 153 (154)
++|+|++++|+ +++.++ .|++||+.+++. ..+..+.. ....++|+| +++.|+.++. ++ .|++||+
T Consensus 228 ~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~--~~~~~~~sp-dg~~l~~~s~~~g~~~i~~~d~ 298 (415)
T 2hqs_A 228 PAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRS--NNTEPTWFP-DSQNLAFTSDQAGRPQVYKVNI 298 (415)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSS--CEEEEEECT-TSSEEEEEECTTSSCEEEEEET
T ss_pred EEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCC--cccceEECC-CCCEEEEEECCCCCcEEEEEEC
Confidence 78999999887 666555 499999998775 44544432 236789999 7788877775 45 6777786
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-17 Score=114.30 Aligned_cols=142 Identities=15% Similarity=0.076 Sum_probs=109.4
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEec--cccccceeEeecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSG--VNFENTAMIHHNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~--~~~~~~~~~~~~~~~~~ 78 (154)
+++++.|++|.+||..+++ ..........+..++|+|+++++++++.|++|.+||+ .+.+....+... .
T Consensus 152 ~vs~~~d~~V~v~D~~t~~-----~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g----~ 222 (543)
T 1nir_A 152 SVTLRDAGQIALVDGDSKK-----IVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG----I 222 (543)
T ss_dssp EEEEGGGTEEEEEETTTCC-----EEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC----S
T ss_pred EEEEcCCCeEEEEECCCce-----EEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecC----C
Confidence 4678889999999998876 3444332223899999999999999999999999999 665554444321 1
Q ss_pred eEeEEEEEEcC----CCcEEEEEc-cCCeEEEecCCCccceeEEeCCC---------cCCcceEEEecCCCccEEEEEcC
Q 038702 79 WISSFRAIWGW----DDSCIFIGN-MTRTVEVISPAQRRSVATLQSPY---------ISAIPCRFHAHPHQVGTLAGATG 144 (154)
Q Consensus 79 ~~~~~~~~~~~----~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~ 144 (154)
....++|+| +++++++++ .++.|.+||..+++++..+..+. .......+.++|..+.++++...
T Consensus 223 --~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~ 300 (543)
T 1nir_A 223 --EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 300 (543)
T ss_dssp --EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred --CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC
Confidence 234678999 999999988 48999999999999988887531 12233678889866678888889
Q ss_pred CCeEEEeeC
Q 038702 145 GGQVYVWTS 153 (154)
Q Consensus 145 d~~i~~wd~ 153 (154)
++.|.+||.
T Consensus 301 ~g~i~vvd~ 309 (543)
T 1nir_A 301 TGKVLLVNY 309 (543)
T ss_dssp TTEEEEEEC
T ss_pred CCeEEEEEe
Confidence 999999996
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-17 Score=110.55 Aligned_cols=139 Identities=13% Similarity=0.043 Sum_probs=99.6
Q ss_pred CeeecCCC---cEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEE-EeeCCCe--EEEEeccccccceeEeecC
Q 038702 1 MATSSTDG---TACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLA-TTSFDDT--IGIWSGVNFENTAMIHHNN 74 (154)
Q Consensus 1 l~~~~~d~---~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~--v~~~~~~~~~~~~~~~~~~ 74 (154)
|++++.++ .|++||+.+++ ...+..|...+.+++|+|+|+.|+ +++.++. |.+||+.+.+......+..
T Consensus 193 la~~s~~~~~~~i~~~d~~tg~-----~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~ 267 (415)
T 2hqs_A 193 LAYVTFESGRSALVIQTLANGA-----VRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRS 267 (415)
T ss_dssp EEEEECTTSSCEEEEEETTTCC-----EEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSS
T ss_pred EEEEEecCCCcEEEEEECCCCc-----EEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCC
Confidence 35566664 89999998765 455668888999999999999887 6666554 9999998766533322221
Q ss_pred CCCceEeEEEEEEcCCCcEEEEEcc-CC--eEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCC---CeE
Q 038702 75 QTGRWISSFRAIWGWDDSCIFIGNM-TR--TVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGG---GQV 148 (154)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~~-d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---~~i 148 (154)
....++|+|++++|++++. ++ .|++||+.+++.. .+..+. .....++|+| ++++|+.++.+ ..|
T Consensus 268 ------~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~--~~~~~~~~sp-dG~~l~~~~~~~g~~~i 337 (415)
T 2hqs_A 268 ------NNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEG--SQNQDADVSS-DGKFMVMVSSNGGQQHI 337 (415)
T ss_dssp ------CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSS--SEEEEEEECT-TSSEEEEEEECSSCEEE
T ss_pred ------cccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEecCC--CcccCeEECC-CCCEEEEEECcCCceEE
Confidence 2346789999998888775 44 6888898887643 333222 2335789999 78888877754 589
Q ss_pred EEeeCC
Q 038702 149 YVWTSD 154 (154)
Q Consensus 149 ~~wd~~ 154 (154)
++||++
T Consensus 338 ~~~d~~ 343 (415)
T 2hqs_A 338 AKQDLA 343 (415)
T ss_dssp EEEETT
T ss_pred EEEECC
Confidence 999974
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.4e-17 Score=105.99 Aligned_cols=143 Identities=15% Similarity=0.081 Sum_probs=97.6
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCC-CeEEEEecc--ccccceeEeecCCCCc
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFD-DTIGIWSGV--NFENTAMIHHNNQTGR 78 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~v~~~~~~--~~~~~~~~~~~~~~~~ 78 (154)
++++.|+.|++|++..... ........+...+.+++|+|+++++++++.+ +.+.+|++. ++........... .
T Consensus 9 ~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~- 84 (343)
T 1ri6_A 9 IASPESQQIHVWNLNHEGA--LTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-G- 84 (343)
T ss_dssp EEEGGGTEEEEEEECTTSC--EEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-S-
T ss_pred EeCCCCCeEEEEEECCCCc--EEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC-C-
Confidence 4557899999999964221 0133344678889999999999988888876 999999997 3332222111111 1
Q ss_pred eEeEEEEEEcCCCcEEEEEc-cCCeEEEecC---CCccceeEEeCCCcCCcceEEEecCCCccEEEEEc-CCCeEEEeeC
Q 038702 79 WISSFRAIWGWDDSCIFIGN-MTRTVEVISP---AQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT-GGGQVYVWTS 153 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~-~d~~i~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~wd~ 153 (154)
....++|+|+++++++++ .++.|.+||+ ...+.+..+..+. .+..++|+| +++++++++ .++.|.+||+
T Consensus 85 --~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~---~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~ 158 (343)
T 1ri6_A 85 --SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD---GCHSANISP-DNRTLWVPALKQDRICLFTV 158 (343)
T ss_dssp --CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCT---TBCCCEECT-TSSEEEEEEGGGTEEEEEEE
T ss_pred --CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCC---CceEEEECC-CCCEEEEecCCCCEEEEEEe
Confidence 123568999999876665 4889999999 4444444444322 235688999 666666665 8999999997
Q ss_pred C
Q 038702 154 D 154 (154)
Q Consensus 154 ~ 154 (154)
+
T Consensus 159 ~ 159 (343)
T 1ri6_A 159 S 159 (343)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.74 E-value=7.7e-17 Score=113.00 Aligned_cols=132 Identities=11% Similarity=0.038 Sum_probs=94.1
Q ss_pred ecCCCcEEEEEccCCCCCCCCCceee-cccC---CeEEEEEcCCCCEEEEeeCC---------CeEEEEeccccccceeE
Q 038702 4 SSTDGTACIWDLRSMATDKPEPTKVL-SHKR---AVHSAYFSPSGSSLATTSFD---------DTIGIWSGVNFENTAMI 70 (154)
Q Consensus 4 ~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~---~v~~~~~~~~~~~l~~~~~d---------~~v~~~~~~~~~~~~~~ 70 (154)
.+.||+|++||+.+++. ..+. .|.. .|.+++|||+|++|++++.+ +.+.+||+.+++.....
T Consensus 33 ~~~dg~i~~~d~~~g~~-----~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~ 107 (723)
T 1xfd_A 33 REQKGTVRLWNVETNTS-----TVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLD 107 (723)
T ss_dssp CCSSSCEEEBCGGGCCC-----EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECC
T ss_pred EeCCCCEEEEECCCCcE-----EEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEecc
Confidence 36789999999988763 3444 4443 49999999999999998764 78889999887652222
Q ss_pred eecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCC----------------cceEEEecCC
Q 038702 71 HHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISA----------------IPCRFHAHPH 134 (154)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~ 134 (154)
.. ......+ ..++|+|+|++|++++. +.|++||+.+++.......+.... ....++|+|
T Consensus 108 ~~-~~~~~~~--~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp- 182 (723)
T 1xfd_A 108 PP-EVSNAKL--QYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP- 182 (723)
T ss_dssp CT-TCCSCCC--SBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-
T ss_pred CC-ccccccc--cccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECC-
Confidence 11 1111112 24579999999998875 799999999888766555433322 115789999
Q ss_pred CccEEEEEcCC
Q 038702 135 QVGTLAGATGG 145 (154)
Q Consensus 135 ~~~~l~~~~~d 145 (154)
+++.|+.++.|
T Consensus 183 Dg~~la~~~~~ 193 (723)
T 1xfd_A 183 DGTRLAYAAIN 193 (723)
T ss_dssp TSSEEEEEEEE
T ss_pred CCCEEEEEEEC
Confidence 88888888754
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.74 E-value=8.2e-17 Score=101.32 Aligned_cols=136 Identities=10% Similarity=0.020 Sum_probs=95.8
Q ss_pred eecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccc-cccceeEeecCCCCceEe
Q 038702 3 TSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN-FENTAMIHHNNQTGRWIS 81 (154)
Q Consensus 3 ~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~-~~~~~~~~~~~~~~~~~~ 81 (154)
.++.|+.|++||+.+++ ...+..|...+.+++|+|++++|++++ ++.|.+||+.+ .+........ ....
T Consensus 17 ~~~~~~~i~~~d~~~~~-----~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~--~~~~-- 86 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRK-----MRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGF--ATIC-- 86 (297)
T ss_dssp -CCCCEEEEEEETTTTE-----EEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTT--CCCB--
T ss_pred CCCcceeEEEEeCCCCc-----eeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecccc--cccc--
Confidence 35678999999998765 455668999999999999999999886 78999999988 6554333211 1111
Q ss_pred EEEEEEcCCCcEEEEEc--cCCe--EEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEE-EEcCCCeEEEeeC
Q 038702 82 SFRAIWGWDDSCIFIGN--MTRT--VEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLA-GATGGGQVYVWTS 153 (154)
Q Consensus 82 ~~~~~~~~~~~~l~~~~--~d~~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~i~~wd~ 153 (154)
...++|+|+++++++++ .++. |..++..+++ ...+..+. . ...++|+| +++.|+ ++..++.+.+|++
T Consensus 87 ~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~--~~~~~~sp-dg~~l~~~~~~~~~~~l~~~ 158 (297)
T 2ojh_A 87 NNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-P--SYWHGWSP-DGKSFTYCGIRDQVFDIYSM 158 (297)
T ss_dssp CSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-S--EEEEEECT-TSSEEEEEEEETTEEEEEEE
T ss_pred ccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-C--ccceEECC-CCCEEEEEECCCCceEEEEE
Confidence 22468999999999988 3344 4445555544 33443222 2 35689999 666665 7888999999984
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.5e-17 Score=114.80 Aligned_cols=130 Identities=14% Similarity=-0.016 Sum_probs=91.4
Q ss_pred eecCCCcEEEEEccCCCCCCCCCceeec-ccC---CeEEEEEcCCCCEEEEeeC---------CCeEEEEecccccccee
Q 038702 3 TSSTDGTACIWDLRSMATDKPEPTKVLS-HKR---AVHSAYFSPSGSSLATTSF---------DDTIGIWSGVNFENTAM 69 (154)
Q Consensus 3 ~~~~d~~v~vw~~~~~~~~~~~~~~~~~-~~~---~v~~~~~~~~~~~l~~~~~---------d~~v~~~~~~~~~~~~~ 69 (154)
..+.|+.|++||+.+++ ...+.. |.. .+.+++|||+|++|++++. ++.+++||+.+++....
T Consensus 31 ~~~~d~~i~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~ 105 (719)
T 1z68_A 31 HQSADNNIVLYNIETGQ-----SYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG 105 (719)
T ss_dssp EECTTSCEEEEESSSCC-----EEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS
T ss_pred EEcCCCCEEEEEcCCCc-----EEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccc
Confidence 44568999999998876 444453 332 4899999999999998876 78999999988765210
Q ss_pred EeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCc----------------ceEEEecC
Q 038702 70 IHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAI----------------PCRFHAHP 133 (154)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~ 133 (154)
..... . ...++|+|||+.|+++. ++.|++|++.+++........+...+ ...++|+|
T Consensus 106 ~~l~~----~--~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP 178 (719)
T 1z68_A 106 NELPR----P--IQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP 178 (719)
T ss_dssp SCCCS----S--BCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT
T ss_pred eecCc----c--cccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC
Confidence 00011 1 22468999999999885 78999999988876543322211111 13689999
Q ss_pred CCccEEEEEcCC
Q 038702 134 HQVGTLAGATGG 145 (154)
Q Consensus 134 ~~~~~l~~~~~d 145 (154)
+++.|+.++.|
T Consensus 179 -DG~~la~~~~d 189 (719)
T 1z68_A 179 -NGKFLAYAEFN 189 (719)
T ss_dssp -TSSEEEEEEEE
T ss_pred -CCCEEEEEEEC
Confidence 88999988755
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.7e-16 Score=100.27 Aligned_cols=139 Identities=12% Similarity=0.043 Sum_probs=99.9
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeC-CCeEEEEecccccc-ceeEeecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSF-DDTIGIWSGVNFEN-TAMIHHNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~~~~~~~~~~-~~~~~~~~~~~~ 78 (154)
+++++.++.|.+||+.+++. ......+...+ .++|+|+++++++++. ++.|.+||+.+.+. .........
T Consensus 13 ~v~~~~~~~v~~~d~~~~~~----~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--- 84 (331)
T 3u4y_A 13 IVVEQHLRRISFFSTDTLEI----LNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQS--- 84 (331)
T ss_dssp EEEEGGGTEEEEEETTTCCE----EEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSS---
T ss_pred EEEecCCCeEEEEeCcccce----eeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCC---
Confidence 36788899999999987663 23333445556 9999999997766655 88999999998876 333332221
Q ss_pred eEeEEE-EEEcCCCcEEEEEccCC---eEEEecCCCccceeEEeCCCcCCcceEEEecCCCcc-EEEEEcCCCe-EEEee
Q 038702 79 WISSFR-AIWGWDDSCIFIGNMTR---TVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVG-TLAGATGGGQ-VYVWT 152 (154)
Q Consensus 79 ~~~~~~-~~~~~~~~~l~~~~~d~---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~-i~~wd 152 (154)
... ++|+|++++++++..++ .|++||+.+++.+..+..+. ....++|+| +++ ++++...++. |.+|+
T Consensus 85 ---~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~sp-dg~~l~~~~~~~~~~i~~~~ 157 (331)
T 3u4y_A 85 ---SMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY---DAVGIAISP-NGNGLILIDRSSANTVRRFK 157 (331)
T ss_dssp ---CCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT---TEEEEEECT-TSSCEEEEEETTTTEEEEEE
T ss_pred ---CccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC---CccceEECC-CCCEEEEEecCCCceEEEEE
Confidence 113 57999999998655553 89999999998888776432 236789999 665 5555566677 99998
Q ss_pred CC
Q 038702 153 SD 154 (154)
Q Consensus 153 ~~ 154 (154)
++
T Consensus 158 ~~ 159 (331)
T 3u4y_A 158 ID 159 (331)
T ss_dssp EC
T ss_pred EC
Confidence 63
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-16 Score=101.56 Aligned_cols=143 Identities=17% Similarity=0.136 Sum_probs=101.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccC---CeEEEEEcCCCCEE-EEeeCCCeEEEEeccccccceeEeecCCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKR---AVHSAYFSPSGSSL-ATTSFDDTIGIWSGVNFENTAMIHHNNQT 76 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l-~~~~~d~~v~~~~~~~~~~~~~~~~~~~~ 76 (154)
+++++.++.|.+||+.+++ ......... .+..++|+|+++.+ +++..++.|.+||+.+.+....+......
T Consensus 4 ~v~~~~~~~v~~~d~~~~~-----~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 78 (337)
T 1pby_B 4 ILAPARPDKLVVIDTEKMA-----VDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEETTTEEEEEETTTTE-----EEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT
T ss_pred EEEcCCCCeEEEEECCCCc-----EEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc
Confidence 4788999999999998765 333333333 58899999999765 55566889999999887765444322100
Q ss_pred CceEeEEEEEEcCCCcEEEEEc------------cCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcC
Q 038702 77 GRWISSFRAIWGWDDSCIFIGN------------MTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATG 144 (154)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~------------~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 144 (154)
........++|+|++++++++. .++.|.+||+.+++.+..+.... . ...++|+| ++++|+++
T Consensus 79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~--~~~~~~s~-dg~~l~~~-- 152 (337)
T 1pby_B 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR-Q--ITMLAWAR-DGSKLYGL-- 152 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS-S--CCCEEECT-TSSCEEEE--
T ss_pred cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCC-C--cceeEECC-CCCEEEEe--
Confidence 0000112467999999888886 57999999999988877776422 2 24678999 77767666
Q ss_pred CCeEEEeeCC
Q 038702 145 GGQVYVWTSD 154 (154)
Q Consensus 145 d~~i~~wd~~ 154 (154)
++.|.+||++
T Consensus 153 ~~~i~~~d~~ 162 (337)
T 1pby_B 153 GRDLHVMDPE 162 (337)
T ss_dssp SSSEEEEETT
T ss_pred CCeEEEEECC
Confidence 6889999973
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.72 E-value=9.7e-17 Score=110.25 Aligned_cols=131 Identities=11% Similarity=-0.010 Sum_probs=97.1
Q ss_pred CCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCC----CeEEEEeccccccceeEeecCCCCceEe
Q 038702 6 TDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFD----DTIGIWSGVNFENTAMIHHNNQTGRWIS 81 (154)
Q Consensus 6 ~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (154)
.++.+.+||+.+++ ...+..+.. .+++|+|+|+++++++.+ ..|.+||+.+++...+..+.. .
T Consensus 130 ~~~~~~l~d~~~g~-----~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~------~ 196 (582)
T 3o4h_A 130 TEDRVALYALDGGG-----LRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEG------S 196 (582)
T ss_dssp CSSCEEEEEEETTE-----EEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSC------E
T ss_pred CCCCceEEEccCCc-----EEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCC------c
Confidence 33445599998765 344444444 889999999999988877 789999998877654332221 2
Q ss_pred EEEEEEcCCCcEEEEEccCC--eEEEecCCCccceeEEeCCCcCCcceEEE--------ecCCCccEEEEEcCCCeEEEe
Q 038702 82 SFRAIWGWDDSCIFIGNMTR--TVEVISPAQRRSVATLQSPYISAIPCRFH--------AHPHQVGTLAGATGGGQVYVW 151 (154)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~d~~i~~w 151 (154)
...++|+|||+.|+++..++ .|++||+.+++.. .+..+.... ..++ |+| ++.++++++.|+++++|
T Consensus 197 ~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~sp-dg~~~~~~~~~g~~~l~ 272 (582)
T 3o4h_A 197 FSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDF--SSYRPTAITWLGYLP-DGRLAVVARREGRSAVF 272 (582)
T ss_dssp EEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHH--HHHCCSEEEEEEECT-TSCEEEEEEETTEEEEE
T ss_pred cccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcCh--hhhhhccccceeEcC-CCcEEEEEEcCCcEEEE
Confidence 34678999999999888888 8999999988876 554433222 2345 999 66889999999999999
Q ss_pred eC
Q 038702 152 TS 153 (154)
Q Consensus 152 d~ 153 (154)
++
T Consensus 273 ~~ 274 (582)
T 3o4h_A 273 ID 274 (582)
T ss_dssp ET
T ss_pred EE
Confidence 85
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.8e-16 Score=110.48 Aligned_cols=132 Identities=13% Similarity=0.040 Sum_probs=92.3
Q ss_pred CeeecC-CC-----cEEEEEccCCCCCCCCCceee-ccc------------------------CCeEEEEEcCCCCEEEE
Q 038702 1 MATSST-DG-----TACIWDLRSMATDKPEPTKVL-SHK------------------------RAVHSAYFSPSGSSLAT 49 (154)
Q Consensus 1 l~~~~~-d~-----~v~vw~~~~~~~~~~~~~~~~-~~~------------------------~~v~~~~~~~~~~~l~~ 49 (154)
|++++. |+ .|++||+.+++ ...+. .+. ..+.+++|+|+|++|++
T Consensus 51 la~~~~~d~~~~~~~i~~~d~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~ 125 (741)
T 2ecf_A 51 VTFLRGKDSDRNQLDLWSYDIGSGQ-----TRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLF 125 (741)
T ss_dssp EEEEECCSSCTTEEEEEEEETTTCC-----EEEEECGGGTC--------------------CCEESCCCEECTTSSEEEE
T ss_pred EEEEeccCCCCcccEEEEEECCCCc-----eeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEE
Confidence 355666 77 89999998765 33333 222 23789999999999999
Q ss_pred eeCCCeEEEEecccc---ccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCC--
Q 038702 50 TSFDDTIGIWSGVNF---ENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISA-- 124 (154)
Q Consensus 50 ~~~d~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~-- 124 (154)
++. +.|.+||+.++ .......+.. ....++|+|+|++|++++ ++.|++||+.+++.......+....
T Consensus 126 ~~~-~~i~~~d~~~~~~~~~~~l~~~~~------~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~ 197 (741)
T 2ecf_A 126 PLG-GELYLYDLKQEGKAAVRQLTHGEG------FATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGN 197 (741)
T ss_dssp EET-TEEEEEESSSCSTTSCCBCCCSSS------CEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEE
T ss_pred EeC-CcEEEEECCCCCcceEEEcccCCc------ccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceec
Confidence 886 89999999887 4333322211 234678999999999887 5699999999877654433222111
Q ss_pred ------------cceEEEecCCCccEEEEEcCCC
Q 038702 125 ------------IPCRFHAHPHQVGTLAGATGGG 146 (154)
Q Consensus 125 ------------~~~~~~~~~~~~~~l~~~~~d~ 146 (154)
....++|+| ++++|++++.|+
T Consensus 198 g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~ 230 (741)
T 2ecf_A 198 GIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDE 230 (741)
T ss_dssp SCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEEC
T ss_pred cccceeeeeccccccceEECC-CCCEEEEEEEcC
Confidence 024689999 888888887665
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=5.2e-15 Score=95.07 Aligned_cols=147 Identities=16% Similarity=0.142 Sum_probs=93.8
Q ss_pred eecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEee-CCCeEEEEeccc-cccceeE--eecCCCCc
Q 038702 3 TSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVN-FENTAMI--HHNNQTGR 78 (154)
Q Consensus 3 ~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~~~~~~~-~~~~~~~--~~~~~~~~ 78 (154)
++..++.|.+||+..+.. ............+.+++|+|+++++++++ .++.|.+||+.+ .+..... ......+.
T Consensus 101 ~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 178 (343)
T 1ri6_A 101 GSYNAGNVSVTRLEDGLP--VGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGA 178 (343)
T ss_dssp EETTTTEEEEEEEETTEE--EEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTC
T ss_pred EecCCCeEEEEECCCCcc--ccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCC
Confidence 445588999999952211 00233334455689999999999888877 899999999987 4332211 11111121
Q ss_pred eEeEEEEEEcCCCcEEEEE-ccCCeEEEecCCC--ccc--eeEEeC---C-CcCCcceEEEecCCCccEEE-EEcCCCeE
Q 038702 79 WISSFRAIWGWDDSCIFIG-NMTRTVEVISPAQ--RRS--VATLQS---P-YISAIPCRFHAHPHQVGTLA-GATGGGQV 148 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~-~~d~~i~i~~~~~--~~~--~~~~~~---~-~~~~~~~~~~~~~~~~~~l~-~~~~d~~i 148 (154)
....++|+|++++++++ ..++.+++|++.. ++. ...+.. . .....+..++|+| ++++|+ ++..++.|
T Consensus 179 --~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~l~v~~~~~~~i 255 (343)
T 1ri6_A 179 --GPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP-DGRHLYACDRTASLI 255 (343)
T ss_dssp --CEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT-TSSEEEEEETTTTEE
T ss_pred --CcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC-CCCEEEEEecCCCEE
Confidence 22357899999976554 5889999999953 432 222221 1 1122335689999 665554 66689999
Q ss_pred EEeeCC
Q 038702 149 YVWTSD 154 (154)
Q Consensus 149 ~~wd~~ 154 (154)
.+||++
T Consensus 256 ~v~d~~ 261 (343)
T 1ri6_A 256 TVFSVS 261 (343)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 999974
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.69 E-value=6.6e-15 Score=95.67 Aligned_cols=148 Identities=11% Similarity=0.027 Sum_probs=94.8
Q ss_pred eeecCCCcEEEEEccCCCC----C-CCC----CceeecccCCeEEEEEcCCCCEEEEee-CCCeEEEEeccccccceeEe
Q 038702 2 ATSSTDGTACIWDLRSMAT----D-KPE----PTKVLSHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNFENTAMIH 71 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~----~-~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~~~~~~~~~~~~~~~ 71 (154)
+++..++.|++|++..... . ... ......+......++|+|+|+++++++ .++.|.+|++.++.......
T Consensus 171 ~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~ 250 (361)
T 3scy_A 171 ADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQT 250 (361)
T ss_dssp EEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEE
T ss_pred EEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEE
Confidence 3455678999999875432 1 000 011224456678999999999887777 68999999998654322221
Q ss_pred ecCCCCceEeEEEEEEcCCCcEEEEEccC--CeEEEecCC--Ccc--ceeEEeCCCcCCcceEEEecCCCccEEEEEc-C
Q 038702 72 HNNQTGRWISSFRAIWGWDDSCIFIGNMT--RTVEVISPA--QRR--SVATLQSPYISAIPCRFHAHPHQVGTLAGAT-G 144 (154)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--~~i~i~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~ 144 (154)
.............++|+|++++|+++..+ +.|.+|++. +++ .+..+.. ...+..++|+| ++++|++++ .
T Consensus 251 ~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~---g~~~~~~~~sp-dg~~l~~~~~~ 326 (361)
T 3scy_A 251 VAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT---GIHPRNFIITP-NGKYLLVACRD 326 (361)
T ss_dssp EESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC---SSCCCEEEECT-TSCEEEEEETT
T ss_pred EecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC---CCCCceEEECC-CCCEEEEEECC
Confidence 11111111122467899999988776654 899999985 344 3334433 22335789999 777776666 6
Q ss_pred CCeEEEeeC
Q 038702 145 GGQVYVWTS 153 (154)
Q Consensus 145 d~~i~~wd~ 153 (154)
++.|.+|++
T Consensus 327 ~~~v~v~~~ 335 (361)
T 3scy_A 327 TNVIQIFER 335 (361)
T ss_dssp TTEEEEEEE
T ss_pred CCCEEEEEE
Confidence 799999754
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=4.7e-16 Score=108.89 Aligned_cols=142 Identities=18% Similarity=0.186 Sum_probs=99.4
Q ss_pred CCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccc-----cccceeEeecCCC---C
Q 038702 6 TDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN-----FENTAMIHHNNQT---G 77 (154)
Q Consensus 6 ~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~-----~~~~~~~~~~~~~---~ 77 (154)
.++.+++||+.+++ ...+..+...+.+++|+|+|+.|+++ .++.|.+|++.+ ++........... +
T Consensus 99 ~~~~i~~~d~~~~~-----~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g 172 (706)
T 2z3z_A 99 TQGGLVGFDMLARK-----VTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYG 172 (706)
T ss_dssp ETTEEEEEETTTTE-----EEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEES
T ss_pred ECCEEEEEECCCCc-----eEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcc
Confidence 46899999998764 45555677789999999999999885 789999999987 5544322211110 0
Q ss_pred ------ceEeEEEEEEcCCCcEEEEEc---------------------------------cCCeEEEecCCCccceeEEe
Q 038702 78 ------RWISSFRAIWGWDDSCIFIGN---------------------------------MTRTVEVISPAQRRSVATLQ 118 (154)
Q Consensus 78 ------~~~~~~~~~~~~~~~~l~~~~---------------------------------~d~~i~i~~~~~~~~~~~~~ 118 (154)
+.-....+.|+|||++|++++ .+..|++||+.+++......
T Consensus 173 ~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~ 252 (706)
T 2z3z_A 173 QAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT 252 (706)
T ss_dssp SCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC
T ss_pred cchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc
Confidence 000012568999999999987 34679999999887544332
Q ss_pred CCCcCCcceEEEecCCCccEEEEEcCCC-----eEEEeeCC
Q 038702 119 SPYISAIPCRFHAHPHQVGTLAGATGGG-----QVYVWTSD 154 (154)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~-----~i~~wd~~ 154 (154)
..........++|+| +++.|++++.++ .|++||++
T Consensus 253 ~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~ 292 (706)
T 2z3z_A 253 GEPKEKFLTNLSWSP-DENILYVAEVNRAQNECKVNAYDAE 292 (706)
T ss_dssp CSCTTCEEEEEEECT-TSSEEEEEEECTTSCEEEEEEEETT
T ss_pred CCCCceeEeeEEEEC-CCCEEEEEEeCCCCCeeEEEEEECC
Confidence 211222336789999 888888877665 89999873
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=8.9e-15 Score=94.45 Aligned_cols=139 Identities=12% Similarity=0.087 Sum_probs=102.5
Q ss_pred cCCCcEEEEEccCCCCCCCCCceeec-ccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEE
Q 038702 5 STDGTACIWDLRSMATDKPEPTKVLS-HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSF 83 (154)
Q Consensus 5 ~~d~~v~vw~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (154)
..++.|.+||..+++ ...... +...+..++|+|+++.+++++.++.+.+||..+.+.......... +......
T Consensus 161 ~~~~~i~~~d~~~~~-----~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~ 234 (353)
T 3vgz_A 161 GKESVIWVVDGGNIK-----LKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDD-GKEHFFI 234 (353)
T ss_dssp SSSCEEEEEETTTTE-----EEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCS-SSCCCEE
T ss_pred CCCceEEEEcCCCCc-----eEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCC-CCCcccc
Confidence 357889999998765 333343 566688999999999999999999999999998776654443111 1111233
Q ss_pred EEEEcCCCcEEEEEcc-CCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCcc-EEEEEcCCCeEEEeeCC
Q 038702 84 RAIWGWDDSCIFIGNM-TRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVG-TLAGATGGGQVYVWTSD 154 (154)
Q Consensus 84 ~~~~~~~~~~l~~~~~-d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~~wd~~ 154 (154)
.++|+|++++++.++. ++.|.+||..+++.+..+..... ..++++| +++ ++++...++.|.+||++
T Consensus 235 ~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~----~~~~~s~-dg~~l~v~~~~~~~v~~~d~~ 302 (353)
T 3vgz_A 235 NISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES----LAVLFNP-ARNEAYVTHRQAGKVSVIDAK 302 (353)
T ss_dssp EEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC----CCEEEET-TTTEEEEEETTTTEEEEEETT
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC----ceEEECC-CCCEEEEEECCCCeEEEEECC
Confidence 5789999997766654 58999999999998888774331 3578999 556 55666689999999973
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-14 Score=92.86 Aligned_cols=143 Identities=8% Similarity=0.056 Sum_probs=101.3
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccC---------CeEEEEEcCCCCEEEEee--CCCeEEEEeccccccceeE
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKR---------AVHSAYFSPSGSSLATTS--FDDTIGIWSGVNFENTAMI 70 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~--~d~~v~~~~~~~~~~~~~~ 70 (154)
++...++.|.+||..+++. ...+..+.. .+.++.|+|+++++++++ .++.|.+||..+.+....+
T Consensus 105 v~~~~~~~v~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~ 180 (353)
T 3vgz_A 105 FGNTVNSAVTAIDAKTGEV----KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAI 180 (353)
T ss_dssp EEETTTTEEEEEETTTCCE----EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred EEecCCCEEEEEeCCCCee----EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEe
Confidence 4566688999999987653 222222221 278899999999877766 4789999999887766554
Q ss_pred eecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCc--CCcceEEEecCCCccEE-EEEcCCCe
Q 038702 71 HHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYI--SAIPCRFHAHPHQVGTL-AGATGGGQ 147 (154)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l-~~~~~d~~ 147 (154)
...... ...++|+|+++++++++.++.|.+||..+++.+..+..... ......++++| +++++ ++...++.
T Consensus 181 ~~~~~~-----~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~ 254 (353)
T 3vgz_A 181 QNTGKM-----STGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDT-ARQRAFITDSKAAE 254 (353)
T ss_dssp CCCCTT-----CCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEET-TTTEEEEEESSSSE
T ss_pred cCCCCc-----cceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECC-CCCEEEEEeCCCCE
Confidence 411111 12457899999999999999999999999988877764221 22335689999 56655 44456699
Q ss_pred EEEeeCC
Q 038702 148 VYVWTSD 154 (154)
Q Consensus 148 i~~wd~~ 154 (154)
|.+||++
T Consensus 255 v~~~d~~ 261 (353)
T 3vgz_A 255 VLVVDTR 261 (353)
T ss_dssp EEEEETT
T ss_pred EEEEECC
Confidence 9999973
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-15 Score=98.06 Aligned_cols=141 Identities=16% Similarity=0.039 Sum_probs=94.5
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccC--CeEEEEEcCCCCEEE-EeeCCCeEEEEeccccccceeEeecCCC-
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKR--AVHSAYFSPSGSSLA-TTSFDDTIGIWSGVNFENTAMIHHNNQT- 76 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~- 76 (154)
+++++.++.|++||+.+++ ......... .+..++|+|+++.++ +...++.|.+||+.+.+...........
T Consensus 14 ~v~~~~~~~v~~~d~~~~~-----~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~ 88 (349)
T 1jmx_B 14 MIVTNYPNNLHVVDVASDT-----VYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPG 88 (349)
T ss_dssp EEEEETTTEEEEEETTTTE-----EEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTT
T ss_pred EEEeCCCCeEEEEECCCCc-----EEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccc
Confidence 4678899999999998765 333333233 678999999998654 5557899999999887665444321100
Q ss_pred CceEeEEEEEEcCCCcEEEEEccC------------CeEEEecCCCccc---eeEEeCCCcCCcceEEEecCCCccEEEE
Q 038702 77 GRWISSFRAIWGWDDSCIFIGNMT------------RTVEVISPAQRRS---VATLQSPYISAIPCRFHAHPHQVGTLAG 141 (154)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~d------------~~i~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 141 (154)
........++|+|+++++++++.+ +.|.+||+.+++. +..+..+. . ...++|+| +++ ++.
T Consensus 89 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~--~~~~~~s~-dg~-l~~ 163 (349)
T 1jmx_B 89 EVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPR-Q--VYLMRAAD-DGS-LYV 163 (349)
T ss_dssp EEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCS-S--CCCEEECT-TSC-EEE
T ss_pred cccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCC-c--ccceeECC-CCc-EEE
Confidence 000111246799999999998866 8999999988543 33443322 2 25678999 667 444
Q ss_pred EcCCCeEEEeeC
Q 038702 142 ATGGGQVYVWTS 153 (154)
Q Consensus 142 ~~~d~~i~~wd~ 153 (154)
++. .|.+||+
T Consensus 164 ~~~--~i~~~d~ 173 (349)
T 1jmx_B 164 AGP--DIYKMDV 173 (349)
T ss_dssp ESS--SEEEECT
T ss_pred ccC--cEEEEeC
Confidence 443 3999986
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=6.4e-15 Score=94.46 Aligned_cols=136 Identities=11% Similarity=0.098 Sum_probs=97.8
Q ss_pred CCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecC--------C--
Q 038702 6 TDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNN--------Q-- 75 (154)
Q Consensus 6 ~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~--------~-- 75 (154)
.++.|.+||+.+++ ..........+.+++|+|++++++++ ++.+.+||+.+.+......... +
T Consensus 113 ~~~~i~v~d~~~~~-----~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg 185 (337)
T 1pby_B 113 QPTRVALYDAETLS-----RRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDV 185 (337)
T ss_dssp CCCEEEEEETTTTE-----EEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBC
T ss_pred cCceEEEEECCCCc-----EEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCc
Confidence 46899999997654 33344445668889999999988887 6889999998765432221100 0
Q ss_pred ------------------------------------------CCce---------EeEEEEEEcCCCcEEEEEccCCeEE
Q 038702 76 ------------------------------------------TGRW---------ISSFRAIWGWDDSCIFIGNMTRTVE 104 (154)
Q Consensus 76 ------------------------------------------~~~~---------~~~~~~~~~~~~~~l~~~~~d~~i~ 104 (154)
.+.. .....++|+|++++++++ ++.|+
T Consensus 186 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~ 263 (337)
T 1pby_B 186 LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLE 263 (337)
T ss_dssp CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEE
T ss_pred cEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEE
Confidence 0000 012247899999999888 79999
Q ss_pred EecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 105 VISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 105 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
+||+.+++.+..+..+. ....++|+| ++++|++++.++.|.+||++
T Consensus 264 ~~d~~~~~~~~~~~~~~---~~~~~~~s~-dg~~l~~~~~~~~i~v~d~~ 309 (337)
T 1pby_B 264 SFDLEKNASIKRVPLPH---SYYSVNVST-DGSTVWLGGALGDLAAYDAE 309 (337)
T ss_dssp EEETTTTEEEEEEECSS---CCCEEEECT-TSCEEEEESBSSEEEEEETT
T ss_pred EEECCCCcCcceecCCC---ceeeEEECC-CCCEEEEEcCCCcEEEEECc
Confidence 99999998887776432 225789999 77888888889999999973
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.1e-14 Score=98.12 Aligned_cols=145 Identities=11% Similarity=0.046 Sum_probs=102.6
Q ss_pred CeeecCCCcEEEEEc--cCCCCCCCCCceeecccCCeEEEEEcC----CCCEEEEeeC-CCeEEEEeccccccceeEeec
Q 038702 1 MATSSTDGTACIWDL--RSMATDKPEPTKVLSHKRAVHSAYFSP----SGSSLATTSF-DDTIGIWSGVNFENTAMIHHN 73 (154)
Q Consensus 1 l~~~~~d~~v~vw~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~-d~~v~~~~~~~~~~~~~~~~~ 73 (154)
|++++.|+.|++||+ .+.+ ......+...+..++|+| +|+++++++. +++|.+||..+.+....+...
T Consensus 193 l~v~~~d~~V~v~D~~~~t~~-----~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~ 267 (543)
T 1nir_A 193 LLVIGRDARIDMIDLWAKEPT-----KVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTR 267 (543)
T ss_dssp EEEEETTSEEEEEETTSSSCE-----EEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECC
T ss_pred EEEECCCCeEEEEECcCCCCc-----EEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeeccc
Confidence 467788899999999 5543 344445666789999999 9999999885 899999999888776555321
Q ss_pred CC--CC----ceEeEEEEEEcCCCc-EEEEEccCCeEEEecCCCcccee--EEeCCCcCCcceEEEecCCCccEE-EEEc
Q 038702 74 NQ--TG----RWISSFRAIWGWDDS-CIFIGNMTRTVEVISPAQRRSVA--TLQSPYISAIPCRFHAHPHQVGTL-AGAT 143 (154)
Q Consensus 74 ~~--~~----~~~~~~~~~~~~~~~-~l~~~~~d~~i~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l-~~~~ 143 (154)
.. .. ..-....+.++|++. ++++...++.|.+||..+.+.+. .+. + ......+.|+| ++++| +++.
T Consensus 268 g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~--~~~~~~~~~sp-dg~~l~va~~ 343 (543)
T 1nir_A 268 GMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-A--APFLHDGGWDS-SHRYFMTAAN 343 (543)
T ss_dssp EECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-C--CSSCCCEEECT-TSCEEEEEEG
T ss_pred CcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-c--CcCccCceECC-CCCEEEEEec
Confidence 10 00 000234567899765 56677788999999999876654 333 2 22235789999 67765 4556
Q ss_pred CCCeEEEeeCC
Q 038702 144 GGGQVYVWTSD 154 (154)
Q Consensus 144 ~d~~i~~wd~~ 154 (154)
.+++|.+||++
T Consensus 344 ~~~~v~v~D~~ 354 (543)
T 1nir_A 344 NSNKVAVIDSK 354 (543)
T ss_dssp GGTEEEEEETT
T ss_pred CCCeEEEEECC
Confidence 78999999973
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-14 Score=92.75 Aligned_cols=135 Identities=8% Similarity=0.063 Sum_probs=92.5
Q ss_pred cEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEe-eCCCe-EEEEeccccccceeE-eecCCCCceEeEEEE
Q 038702 9 TACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATT-SFDDT-IGIWSGVNFENTAMI-HHNNQTGRWISSFRA 85 (154)
Q Consensus 9 ~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~-v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 85 (154)
.|.+||+.+++ ......+.....+++|+|+|++++++ ..++. +.+|++......... ......+. ....+
T Consensus 109 ~i~v~d~~~~~-----~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~--~~~~~ 181 (331)
T 3u4y_A 109 NMQSYSFLKNK-----FISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGT--RPFNI 181 (331)
T ss_dssp EEEEEETTTTE-----EEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSS--SEEEE
T ss_pred cEEEEECCCCC-----eEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCC--Cccce
Confidence 89999998765 34445555667999999999865555 55578 999998764433211 11001111 13467
Q ss_pred EEcCCCcEEEE-EccCCeEEEecCCCccc---eeEEeCCCcCCcceEEEecCCCccEEE-EEcCCCeEEEeeCC
Q 038702 86 IWGWDDSCIFI-GNMTRTVEVISPAQRRS---VATLQSPYISAIPCRFHAHPHQVGTLA-GATGGGQVYVWTSD 154 (154)
Q Consensus 86 ~~~~~~~~l~~-~~~d~~i~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~i~~wd~~ 154 (154)
+|+|++++++. +..++.|++||+.+++. +..+..+ ..+..++++| ++++++ +...++.|.+||++
T Consensus 182 ~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~---~~~~~~~~sp-dg~~l~v~~~~~~~i~~~d~~ 251 (331)
T 3u4y_A 182 TFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN---NLPGTIVVSR-DGSTVYVLTESTVDVFNFNQL 251 (331)
T ss_dssp EECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS---SCCCCEEECT-TSSEEEEECSSEEEEEEEETT
T ss_pred EECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC---CCCceEEECC-CCCEEEEEEcCCCEEEEEECC
Confidence 89999986544 55688999999999888 7666633 2235689999 777554 44567889999973
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=4.4e-15 Score=108.08 Aligned_cols=137 Identities=10% Similarity=-0.053 Sum_probs=101.7
Q ss_pred eeecCCCcEE-EEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe-ecCCCCce
Q 038702 2 ATSSTDGTAC-IWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQTGRW 79 (154)
Q Consensus 2 ~~~~~d~~v~-vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~ 79 (154)
+.++.++.+. +|++..+. ...+.+|...+..++|+|+|++|++++.++.+++||+.+++...... +.. .
T Consensus 352 ~~~s~~~~l~~~~d~~~~~-----~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~----~ 422 (1045)
T 1k32_A 352 IHGTREGDFLGIYDYRTGK-----AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREA----M 422 (1045)
T ss_dssp EEEETTEEEEEEEETTTCC-----EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSS----C
T ss_pred EEEECCCceEEEEECCCCC-----ceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCC----C
Confidence 3445566677 88887654 33334778899999999999999999999999999999877655542 221 1
Q ss_pred EeEEEEEEcCCCcEEEEEccCC----------eEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEE
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTR----------TVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVY 149 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~----------~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 149 (154)
...++|+|+|++|++++.++ .|++||+.+++ +..+..+.... ..++|+| ++++|+.++.++...
T Consensus 423 --v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~--~~~~~sp-dG~~l~~~s~~~~~~ 496 (1045)
T 1k32_A 423 --ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHD--YAPAFDA-DSKNLYYLSYRSLDP 496 (1045)
T ss_dssp --CCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBE--EEEEECT-TSCEEEEEESCCCCC
T ss_pred --ccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCccc--CCceEcC-CCCEEEEEecccCCc
Confidence 12568999999998887654 89999999877 55555443222 5688999 888998888877777
Q ss_pred EeeC
Q 038702 150 VWTS 153 (154)
Q Consensus 150 ~wd~ 153 (154)
+|+.
T Consensus 497 ~~~~ 500 (1045)
T 1k32_A 497 SPDR 500 (1045)
T ss_dssp EECS
T ss_pred Ccch
Confidence 7753
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.65 E-value=9.6e-15 Score=91.83 Aligned_cols=138 Identities=14% Similarity=0.086 Sum_probs=89.8
Q ss_pred CCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEE-EeeCCCeEEEEeccccccceeEeecCCCCceEeEEE
Q 038702 6 TDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLA-TTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFR 84 (154)
Q Consensus 6 ~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
.++...||.++.... ......+...+..++|+|+++.++ ++..++.+++|++........... .... ....
T Consensus 106 ~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~--~~~~ 177 (297)
T 2ojh_A 106 EFGKSAIYLLPSTGG----TPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLT--HGEG--RNDG 177 (297)
T ss_dssp TTSSCEEEEEETTCC----CCEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECC--CSSS--CEEE
T ss_pred CCCcceEEEEECCCC----ceEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcc--cCCC--cccc
Confidence 335666666643322 223333344589999999999877 777899999999753322111111 1111 2346
Q ss_pred EEEcCCCcEEEEEc-cCCeEEEecCC-CccceeEEeCCCcCCcceEEEecCCCccEEEEEcCC-----------CeEEEe
Q 038702 85 AIWGWDDSCIFIGN-MTRTVEVISPA-QRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGG-----------GQVYVW 151 (154)
Q Consensus 85 ~~~~~~~~~l~~~~-~d~~i~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----------~~i~~w 151 (154)
+.|+|++++++.++ .++.+++|++. .+..+..+..+.. ....++|+| ++++|+.++.+ +.|++|
T Consensus 178 ~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~l~~~ 254 (297)
T 2ojh_A 178 PDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAY--GDWFPHPSP-SGDKVVFVSYDADVFDHPRDLDVRVQLM 254 (297)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSE--EEEEEEECT-TSSEEEEEEEETTCCSCCSSEEEEEEEE
T ss_pred ceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCc--ccCCeEECC-CCCEEEEEEcCCCCCcccccCceEEEEE
Confidence 78999999887665 58899999886 4555556654432 235789999 78888877765 569999
Q ss_pred eCC
Q 038702 152 TSD 154 (154)
Q Consensus 152 d~~ 154 (154)
|++
T Consensus 255 d~~ 257 (297)
T 2ojh_A 255 DMD 257 (297)
T ss_dssp ETT
T ss_pred ecC
Confidence 873
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.6e-14 Score=91.23 Aligned_cols=148 Identities=9% Similarity=0.063 Sum_probs=91.1
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCCCEEEE-eeCCCeEEEEeccc--cccceeEee-cCCC
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLAT-TSFDDTIGIWSGVN--FENTAMIHH-NNQT 76 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~-~~~d~~v~~~~~~~--~~~~~~~~~-~~~~ 76 (154)
++...++.|++|++..... ........ .....+..++|+|+|+++++ ...++.+.+|++.. ++....... ....
T Consensus 156 v~~~~~~~v~~~~~~~~g~-~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~ 234 (347)
T 3hfq_A 156 VIDLGSDKVYVYNVSDAGQ-LSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPA 234 (347)
T ss_dssp EEETTTTEEEEEEECTTSC-EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCT
T ss_pred EEeCCCCEEEEEEECCCCc-EEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCC
Confidence 4556688999999983221 00011111 22346788999999996655 56788999999875 222111111 1110
Q ss_pred --CceEeEEEEEEcCCCcEEE-EEccCCeEEEecCCCc---cceeEEeCCCcCCcceEEEecCCCccEEEEEc-CCCeEE
Q 038702 77 --GRWISSFRAIWGWDDSCIF-IGNMTRTVEVISPAQR---RSVATLQSPYISAIPCRFHAHPHQVGTLAGAT-GGGQVY 149 (154)
Q Consensus 77 --~~~~~~~~~~~~~~~~~l~-~~~~d~~i~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~ 149 (154)
........++|+|+|++|+ +...++.|.+|++... +.+..+..+. ..+..++|+| ++++|++++ .++.|.
T Consensus 235 ~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~--~~~~~~~~sp-dg~~l~v~~~~~~~v~ 311 (347)
T 3hfq_A 235 DYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEG--DFPRDFDLDP-TEAFVVVVNQNTDNAT 311 (347)
T ss_dssp TCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSS--SCCCEEEECT-TSSEEEEEETTTTEEE
T ss_pred CCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCC--CCcCeEEECC-CCCEEEEEEcCCCcEE
Confidence 0011344678999999875 4456899999999732 3344444322 2235789999 777776665 458999
Q ss_pred EeeC
Q 038702 150 VWTS 153 (154)
Q Consensus 150 ~wd~ 153 (154)
+|++
T Consensus 312 v~~~ 315 (347)
T 3hfq_A 312 LYAR 315 (347)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9954
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.64 E-value=9e-15 Score=102.93 Aligned_cols=147 Identities=15% Similarity=0.126 Sum_probs=98.1
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCC---C-
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQT---G- 77 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~---~- 77 (154)
++++. +.|++||+.++... ....+..|...+..++|+|+|++|++++ ++.|.+||+.+++........... +
T Consensus 124 ~~~~~-~~i~~~d~~~~~~~--~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~ 199 (741)
T 2ecf_A 124 LFPLG-GELYLYDLKQEGKA--AVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGI 199 (741)
T ss_dssp EEEET-TEEEEEESSSCSTT--SCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESC
T ss_pred EEEeC-CcEEEEECCCCCcc--eEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccc
Confidence 33443 88999999876200 0445557888899999999999999887 468999999876544332211100 0
Q ss_pred -ceE------eEEEEEEcCCCcEEEEEccCC---------------------------------eEEEecCCC-ccceeE
Q 038702 78 -RWI------SSFRAIWGWDDSCIFIGNMTR---------------------------------TVEVISPAQ-RRSVAT 116 (154)
Q Consensus 78 -~~~------~~~~~~~~~~~~~l~~~~~d~---------------------------------~i~i~~~~~-~~~~~~ 116 (154)
.++ ....+.|+|||++|++++.|+ .|++||+.+ ++....
T Consensus 200 ~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~ 279 (741)
T 2ecf_A 200 AEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWI 279 (741)
T ss_dssp CCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEE
T ss_pred cceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEe
Confidence 000 012468999999999988765 789999988 775543
Q ss_pred EeCCCcCCcceEEEecCCCccEEEEEcC-----CCeEEEeeCC
Q 038702 117 LQSPYISAIPCRFHAHPHQVGTLAGATG-----GGQVYVWTSD 154 (154)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----d~~i~~wd~~ 154 (154)
............++| | +++.|+.++. +..|++||++
T Consensus 280 ~~~~~~~~~~~~~~~-p-Dg~~l~~~~~~~~~~~~~i~~~d~~ 320 (741)
T 2ecf_A 280 DLGKEQDIYLARVNW-R-DPQHLSFQRQSRDQKKLDLVEVTLA 320 (741)
T ss_dssp CCCSCSSEEEEEEEE-E-ETTEEEEEEEETTSSEEEEEEEETT
T ss_pred cCCCCcceEEEEEEe-C-CCCEEEEEEecccCCeEEEEEEECC
Confidence 322111223367899 8 7888876543 5689999863
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.4e-14 Score=92.58 Aligned_cols=143 Identities=9% Similarity=0.019 Sum_probs=92.8
Q ss_pred CCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEee-CCCeEEEEeccccccceeEe---ecCCC----Cc
Q 038702 7 DGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNFENTAMIH---HNNQT----GR 78 (154)
Q Consensus 7 d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~~~~~~~~~~~~~~~---~~~~~----~~ 78 (154)
++.|.+|++..+... .......+...+..++|+|++++|++++ .++.+.+|++.......... ..... ..
T Consensus 62 ~~~v~~~~~~~g~~~--~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~ 139 (347)
T 3hfq_A 62 EGGIAAWQIDGQTAH--KLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQD 139 (347)
T ss_dssp EEEEEEEEEETTEEE--EEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCS
T ss_pred CceEEEEEecCCcEE--EeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCcccc
Confidence 689999999654320 0122235777889999999999888887 68999999996432222211 11100 00
Q ss_pred eEeEEEEEEcCCCcEEEEEccCCeEEEecCC-Ccccee--EEeCCCcCCcceEEEecCCCccE-EEEEcCCCeEEEeeC
Q 038702 79 WISSFRAIWGWDDSCIFIGNMTRTVEVISPA-QRRSVA--TLQSPYISAIPCRFHAHPHQVGT-LAGATGGGQVYVWTS 153 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~d~~i~~wd~ 153 (154)
......++|+|+++++++...++.|++|++. +++... .+..+. ...+..++|+| ++++ +++...++.|.+|++
T Consensus 140 ~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~ 216 (347)
T 3hfq_A 140 GSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEA-GFGPRHLVFSP-DGQYAFLAGELSSQIASLKY 216 (347)
T ss_dssp SCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCT-TCCEEEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCC-CCCCceEEECC-CCCEEEEEeCCCCEEEEEEe
Confidence 1123357899999976777778899999998 444322 222222 22235789999 7774 555678899999986
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=6.9e-15 Score=107.09 Aligned_cols=133 Identities=11% Similarity=-0.021 Sum_probs=101.8
Q ss_pred CCcEEEEEccCCCCCCCCCceeecccC-CeEEEEEcCCCCEEEEeeCCCeEE-EEeccccccceeEeecCCCCceEeEEE
Q 038702 7 DGTACIWDLRSMATDKPEPTKVLSHKR-AVHSAYFSPSGSSLATTSFDDTIG-IWSGVNFENTAMIHHNNQTGRWISSFR 84 (154)
Q Consensus 7 d~~v~vw~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
++.+.+|++..+. ...+..|.. .+..++|+ +|+.+++++.+..+. +|++.+.+......+ . .....
T Consensus 316 ~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~----~--~~~~~ 383 (1045)
T 1k32_A 316 RGQAFIQDVSGTY-----VLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEEN----L--GNVFA 383 (1045)
T ss_dssp TTEEEEECTTSSB-----EEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCC----C--CSEEE
T ss_pred cCEEEEEcCCCCc-----eEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCC----c--cceee
Confidence 6789999987654 334446777 89999999 999999998888888 889877654332211 1 13346
Q ss_pred EEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCC----------CeEEEeeCC
Q 038702 85 AIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGG----------GQVYVWTSD 154 (154)
Q Consensus 85 ~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----------~~i~~wd~~ 154 (154)
++|+|++++|++++.++.|++||+.+++....+..+.... ..++|+| ++++|++++.+ +.|++||++
T Consensus 384 ~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v--~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~ 460 (1045)
T 1k32_A 384 MGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMI--TDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDME 460 (1045)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCC--CCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred eEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCc--cceEECC-CCCeEEEEecCccccccCCCCCeEEEEECC
Confidence 7899999999999999999999999998777765554433 4689999 88888887764 489999974
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.63 E-value=5.3e-14 Score=90.65 Aligned_cols=137 Identities=13% Similarity=0.028 Sum_probs=94.1
Q ss_pred CCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecC--C---------
Q 038702 7 DGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNN--Q--------- 75 (154)
Q Consensus 7 d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~--~--------- 75 (154)
++.|.+||+.+++... ......+...+.+++|+|+++ +++++. .|.+||+.+.+....+.... .
T Consensus 124 ~~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (349)
T 1jmx_B 124 PPRLEVFSTADGLEAK--PVRTFPMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVL 198 (349)
T ss_dssp CCEEEEEEGGGGGGBC--CSEEEECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCC
T ss_pred CCeEEEEECCCccccc--eeeeccCCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccce
Confidence 4899999998743211 233445556789999999999 555543 49999998766543332110 0
Q ss_pred --------CCce--------------------------------------------EeEEEEEEcC-CCcEEEEEccCCe
Q 038702 76 --------TGRW--------------------------------------------ISSFRAIWGW-DDSCIFIGNMTRT 102 (154)
Q Consensus 76 --------~~~~--------------------------------------------~~~~~~~~~~-~~~~l~~~~~d~~ 102 (154)
.... .....++++| ++++++++ ++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~ 276 (349)
T 1jmx_B 199 YFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNR 276 (349)
T ss_dssp CCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESE
T ss_pred eeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCe
Confidence 0000 0123456789 99998888 889
Q ss_pred EEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 103 VEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 103 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
|.+||+.+++.+..+.... . ...++++| ++++|++++.++.|.+||++
T Consensus 277 v~~~d~~~~~~~~~~~~~~-~--~~~~~~s~-dg~~l~~~~~~~~v~v~d~~ 324 (349)
T 1jmx_B 277 LAKYDLKQRKLIKAANLDH-T--YYCVAFDK-KGDKLYLGGTFNDLAVFNPD 324 (349)
T ss_dssp EEEEETTTTEEEEEEECSS-C--CCEEEECS-SSSCEEEESBSSEEEEEETT
T ss_pred EEEEECccCeEEEEEcCCC-C--ccceEECC-CCCEEEEecCCCeEEEEecc
Confidence 9999999998887776432 2 24789999 67777778888999999974
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-14 Score=102.15 Aligned_cols=126 Identities=9% Similarity=-0.045 Sum_probs=83.3
Q ss_pred eeecCCCcEEEEEccCCCCCCCCC-ceeeccc-----------------CCeEEEEEcCCCCEEEEeeCCCeEEEEeccc
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEP-TKVLSHK-----------------RAVHSAYFSPSGSSLATTSFDDTIGIWSGVN 63 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~-~~~~~~~-----------------~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~ 63 (154)
++++.|+ | +||+.+++. . ..+..+. ..|.+++|+|+ ..++.+ .++.+.+||+.+
T Consensus 39 ~~~~~~~-i-~~d~~tg~~----~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~ 110 (706)
T 2z3z_A 39 VFIEGDD-L-VFNKANGKS----AQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQGGLVGFDMLA 110 (706)
T ss_dssp EEEETTE-E-EEEC-----------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETTEEEEEETTT
T ss_pred EEEeCCc-E-EEECCCCcE----eeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECCEEEEEECCC
Confidence 4556677 8 999988763 1 3344433 56999999999 665555 459999999988
Q ss_pred cccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCC-----ccceeEEeCCCcCC------------cc
Q 038702 64 FENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQ-----RRSVATLQSPYISA------------IP 126 (154)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~-----~~~~~~~~~~~~~~------------~~ 126 (154)
++......+... + ..++|+|+|++|+++ .++.|++|++.+ ++.......+.... ..
T Consensus 111 ~~~~~l~~~~~~----~--~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~ 183 (706)
T 2z3z_A 111 RKVTYLFDTNEE----T--ASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIE 183 (706)
T ss_dssp TEEEEEECCTTC----C--TTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCC
T ss_pred CceEEccCCccc----c--cCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCC
Confidence 765444333221 1 245799999999885 789999999988 76654433322211 02
Q ss_pred eEEEecCCCccEEEEEc
Q 038702 127 CRFHAHPHQVGTLAGAT 143 (154)
Q Consensus 127 ~~~~~~~~~~~~l~~~~ 143 (154)
..+.|+| ++++|++++
T Consensus 184 ~~~~~Sp-Dg~~la~~~ 199 (706)
T 2z3z_A 184 KGTFWSP-KGSCLAFYR 199 (706)
T ss_dssp CSEEECT-TSSEEEEEE
T ss_pred ceEEECC-CCCEEEEEE
Confidence 5689999 889998887
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.5e-14 Score=100.43 Aligned_cols=143 Identities=9% Similarity=0.039 Sum_probs=96.5
Q ss_pred CCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE------
Q 038702 7 DGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI------ 80 (154)
Q Consensus 7 d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~------ 80 (154)
++.+.+||+.+++... .....+|...+..++|||+|+.|+.++. +.|.+||+.+++.......... ....
T Consensus 90 ~~~i~~~d~~~~~~~~--l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~-~~~~~g~~~~ 165 (723)
T 1xfd_A 90 TGYYVLSKIPHGDPQS--LDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKE-GVIYNGLSDW 165 (723)
T ss_dssp CSEEEEEESSSCCCEE--CCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBT-TTEEEEECCH
T ss_pred eeeEEEEECCCCceEe--ccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCC-CceECcccce
Confidence 4788999998765200 1111145556889999999999999876 7899999988766544332111 0000
Q ss_pred --------eEEEEEEcCCCcEEEEEccCC----------------------------------eEEEecCCCccceeEEe
Q 038702 81 --------SSFRAIWGWDDSCIFIGNMTR----------------------------------TVEVISPAQRRSVATLQ 118 (154)
Q Consensus 81 --------~~~~~~~~~~~~~l~~~~~d~----------------------------------~i~i~~~~~~~~~~~~~ 118 (154)
....+.|+|||++|++++.++ .|++||+.+++....+.
T Consensus 166 v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~ 245 (723)
T 1xfd_A 166 LYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMM 245 (723)
T ss_dssp HHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECC
T ss_pred eEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEee
Confidence 113578999999999987653 79999999887656665
Q ss_pred CCC----cCCcceEEEecCCCccEEEEEc----CCCeEEEeeCC
Q 038702 119 SPY----ISAIPCRFHAHPHQVGTLAGAT----GGGQVYVWTSD 154 (154)
Q Consensus 119 ~~~----~~~~~~~~~~~~~~~~~l~~~~----~d~~i~~wd~~ 154 (154)
.+. .......++|+| +++++++.. .+..|++||++
T Consensus 246 ~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~ 288 (723)
T 1xfd_A 246 PPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDAT 288 (723)
T ss_dssp CCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETT
T ss_pred CCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCC
Confidence 431 122236789999 778876654 33679999863
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.59 E-value=8.5e-13 Score=85.76 Aligned_cols=148 Identities=15% Similarity=0.162 Sum_probs=92.3
Q ss_pred eecCCCcEEEEEccCCCCCCCCCceeec-----------ccCCeEEEEEcCCCCEEEEee-CCCeEEEEecccccc----
Q 038702 3 TSSTDGTACIWDLRSMATDKPEPTKVLS-----------HKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNFEN---- 66 (154)
Q Consensus 3 ~~~~d~~v~vw~~~~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~-~d~~v~~~~~~~~~~---- 66 (154)
+...++.|.+|++....... ....... +...+.+++|+|+|+++++++ .++.+.+|++.....
T Consensus 115 ~~~~~~~v~~~~~~~~g~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~ 193 (361)
T 3scy_A 115 ANYSGGSITVFPIGQDGALL-PASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNK 193 (361)
T ss_dssp EETTTTEEEEEEBCTTSCBC-SCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTC
T ss_pred EECCCCEEEEEEeCCCCcCc-ccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccc
Confidence 34468899999997543211 1111111 123458899999999766655 588999999876542
Q ss_pred --ceeE----eecCCCCceEeEEEEEEcCCCcEEEEEc-cCCeEEEecCCCccc--eeEEeCCCc-CCcceEEEecCCCc
Q 038702 67 --TAMI----HHNNQTGRWISSFRAIWGWDDSCIFIGN-MTRTVEVISPAQRRS--VATLQSPYI-SAIPCRFHAHPHQV 136 (154)
Q Consensus 67 --~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~i~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~ 136 (154)
.... ......+. ....++|+|+++++++++ .++.|++|++.+++. +..+..... ......++|+| ++
T Consensus 194 ~~l~~~~~~~~~~~~~~~--~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~sp-dg 270 (361)
T 3scy_A 194 EKFLTKGTPEAFKVAPGS--GPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSP-DG 270 (361)
T ss_dssp CCCEEEEEEEEEECCTTC--CEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECT-TS
T ss_pred cceeecccccceecCCCC--CCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECC-CC
Confidence 2111 11111111 123578999999887766 689999999986643 333332111 12235789999 77
Q ss_pred cEEEEEcC--CCeEEEeeCC
Q 038702 137 GTLAGATG--GGQVYVWTSD 154 (154)
Q Consensus 137 ~~l~~~~~--d~~i~~wd~~ 154 (154)
++|+++.. ++.|.+|+++
T Consensus 271 ~~l~v~~~~~~~~i~v~~~~ 290 (361)
T 3scy_A 271 KYLYASNRLKADGVAIFKVD 290 (361)
T ss_dssp SEEEEEECSSSCEEEEEEEC
T ss_pred CEEEEECCCCCCEEEEEEEc
Confidence 87755554 5899999873
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-12 Score=84.40 Aligned_cols=141 Identities=6% Similarity=0.001 Sum_probs=89.7
Q ss_pred CCCcEEEEEccCCCCCCCCCceee-----cccCCeEEEEEcCCCCEEEEeeC-CCeEEEEecc-ccccceeEeecCC-CC
Q 038702 6 TDGTACIWDLRSMATDKPEPTKVL-----SHKRAVHSAYFSPSGSSLATTSF-DDTIGIWSGV-NFENTAMIHHNNQ-TG 77 (154)
Q Consensus 6 ~d~~v~vw~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~-d~~v~~~~~~-~~~~~~~~~~~~~-~~ 77 (154)
.++.+.+|++..... ..... .+...+.+++|+|+|++++++.. ++.|.+|++. +++.......... .+
T Consensus 117 ~~g~v~v~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g 192 (365)
T 1jof_A 117 FAGYGNVFSVSETGK----LEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG 192 (365)
T ss_dssp SCCEEEEEEECTTCC----EEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred CCceEEEEccCCCCc----CcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCC
Confidence 688999999974321 22111 24568999999999998887654 6899999998 5543222111111 12
Q ss_pred ceEeEEEEEEcCCCcEEEEEcc-CCeEEEecCC--Cccce---eEEeCCC---cC-C-------cceEEE-ecCCCccEE
Q 038702 78 RWISSFRAIWGWDDSCIFIGNM-TRTVEVISPA--QRRSV---ATLQSPY---IS-A-------IPCRFH-AHPHQVGTL 139 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~-d~~i~i~~~~--~~~~~---~~~~~~~---~~-~-------~~~~~~-~~~~~~~~l 139 (154)
. ....++|+|+|+++++++. ++.|.+|++. +++.. ..+.... .. . ....++ ++| ++++|
T Consensus 193 ~--~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~sp-dG~~l 269 (365)
T 1jof_A 193 D--HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-SGKYM 269 (365)
T ss_dssp C--CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-TSSEE
T ss_pred C--CCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECC-CCCEE
Confidence 1 2335689999998877764 6899998764 45542 1222111 01 1 246788 999 77777
Q ss_pred EEEcC-CC-----eEEEeeC
Q 038702 140 AGATG-GG-----QVYVWTS 153 (154)
Q Consensus 140 ~~~~~-d~-----~i~~wd~ 153 (154)
++++. +. .|.+|++
T Consensus 270 ~v~~~~~~~~~~~~i~v~~~ 289 (365)
T 1jof_A 270 FASSRANKFELQGYIAGFKL 289 (365)
T ss_dssp EEEEEESSTTSCCEEEEEEE
T ss_pred EEECCCCCCCCCCeEEEEEE
Confidence 66553 23 8999986
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.55 E-value=3.8e-14 Score=100.03 Aligned_cols=125 Identities=10% Similarity=-0.014 Sum_probs=85.9
Q ss_pred CCcEEEEEccCCCCCCCCCceee-cccC-----CeEEEEEcCCCCEEEEeeCC---------CeEEEEeccccccceeEe
Q 038702 7 DGTACIWDLRSMATDKPEPTKVL-SHKR-----AVHSAYFSPSGSSLATTSFD---------DTIGIWSGVNFENTAMIH 71 (154)
Q Consensus 7 d~~v~vw~~~~~~~~~~~~~~~~-~~~~-----~v~~~~~~~~~~~l~~~~~d---------~~v~~~~~~~~~~~~~~~ 71 (154)
|+.|++||+.+++. ..+. +|.. ....+.|||+|++++.++.+ +.+.+||+.+++...+..
T Consensus 35 ~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~ 109 (740)
T 4a5s_A 35 ENNILVFNAEYGNS-----SVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEER 109 (740)
T ss_dssp TTEEEEEETTTCCE-----EEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC
T ss_pred CCcEEEEECCCCce-----EEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEccc
Confidence 89999999988763 3333 4432 22458899999999998876 556799999877544332
Q ss_pred ecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcC----------------CcceEEEecCCC
Q 038702 72 HNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYIS----------------AIPCRFHAHPHQ 135 (154)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~ 135 (154)
+.. .....+|+|||+.|+.+ .++.|++|++.+++..+........ .....+.|+| +
T Consensus 110 ~~~------~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp-D 181 (740)
T 4a5s_A 110 IPN------NTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-N 181 (740)
T ss_dssp CCT------TEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-T
T ss_pred CCC------cceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECC-C
Confidence 221 23467899999999887 5789999999887754322211111 1112478999 8
Q ss_pred ccEEEEEcC
Q 038702 136 VGTLAGATG 144 (154)
Q Consensus 136 ~~~l~~~~~ 144 (154)
++.|+..+.
T Consensus 182 g~~la~~~~ 190 (740)
T 4a5s_A 182 GTFLAYAQF 190 (740)
T ss_dssp SSEEEEEEE
T ss_pred CCEEEEEEE
Confidence 898888764
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=4.1e-12 Score=80.05 Aligned_cols=139 Identities=7% Similarity=0.038 Sum_probs=95.7
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceee---cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCc
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVL---SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGR 78 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (154)
++...++.|.+|+... + ..... .+...+..++++|+++.+++...++.|.+||.... ....+... +.
T Consensus 136 v~~~~~~~i~~~~~~g-~-----~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~~~~~~~---g~ 205 (286)
T 1q7f_A 136 VVECKVMRVIIFDQNG-N-----VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ-YLRQIGGE---GI 205 (286)
T ss_dssp EEETTTTEEEEECTTS-C-----EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC-EEEEESCT---TT
T ss_pred EEECCCCEEEEEcCCC-C-----EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCC-EEEEEccC---Cc
Confidence 3445677888888542 2 22222 34457899999999998888888999999997543 22222211 11
Q ss_pred eEeEEEEEEcCCCcEEEEEccCC-eEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 79 WISSFRAIWGWDDSCIFIGNMTR-TVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~d~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
......++++++++++++...++ .|++|+. +++.+..+..+.....+..++++| +++++++ +.|++|++|++
T Consensus 206 ~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~ 278 (286)
T 1q7f_A 206 TNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMD-DGSVVLA-SKDYRLYIYRY 278 (286)
T ss_dssp SCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEET-TTEEEEE-ETTTEEEEEEC
T ss_pred cCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECC-CCcEEEE-CCCCeEEEEEc
Confidence 11234678899999888887776 9999995 566666666544333446889999 7777777 57999999986
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1e-13 Score=95.34 Aligned_cols=131 Identities=11% Similarity=-0.043 Sum_probs=90.9
Q ss_pred CcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCC--eEEEEeccccccceeEe-ecCCCCce--EeE
Q 038702 8 GTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDD--TIGIWSGVNFENTAMIH-HNNQTGRW--ISS 82 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~v~~~~~~~~~~~~~~~-~~~~~~~~--~~~ 82 (154)
+.|++||+.+++ ...+..|.+.+..++|+|+|+.|+++..++ .|.+||+.+++.. ... +....... ...
T Consensus 175 ~~i~~~d~~~g~-----~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~ 248 (582)
T 3o4h_A 175 VSLFTSNLSSGG-----LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAI 248 (582)
T ss_dssp EEEEEEETTTCC-----CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEE
T ss_pred eEEEEEcCCCCC-----ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccc
Confidence 679999988765 455668888899999999999999888888 8999999887655 222 11100000 001
Q ss_pred EEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCC---eEEEeeC
Q 038702 83 FRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGG---QVYVWTS 153 (154)
Q Consensus 83 ~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~---~i~~wd~ 153 (154)
....|+|+|.++++++.++.+++|++ ++.... .. . ....++++ ++.++++++.+. .+.+||+
T Consensus 249 ~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~---~~-~-~v~~~~~s--dg~~l~~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 249 TWLGYLPDGRLAVVARREGRSAVFID--GERVEA---PQ-G-NHGRVVLW--RGKLVTSHTSLSTPPRIVSLPS 313 (582)
T ss_dssp EEEEECTTSCEEEEEEETTEEEEEET--TEEECC---CS-S-EEEEEEEE--TTEEEEEEEETTEEEEEEEETT
T ss_pred cceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc---CC-C-ceEEEEec--CCEEEEEEcCCCCCCeEEEEcC
Confidence 12349999988999999999999999 554431 22 2 22467777 567777777664 3666664
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=4e-13 Score=87.62 Aligned_cols=143 Identities=8% Similarity=0.084 Sum_probs=89.2
Q ss_pred eeecCCCcEEEEEcc-CCCCCCCCCceeeccc--CCeEEEEEcCCCCE--EEEee-------------CCCeEEEEeccc
Q 038702 2 ATSSTDGTACIWDLR-SMATDKPEPTKVLSHK--RAVHSAYFSPSGSS--LATTS-------------FDDTIGIWSGVN 63 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~-~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~--l~~~~-------------~d~~v~~~~~~~ 63 (154)
++++.+ .|.+|++. +++ ......+. +....++|+|+|++ ++++. .++.+.+|++..
T Consensus 55 ~~~~~~-~v~~~~~~~~g~-----~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~ 128 (365)
T 1jof_A 55 YGAAMK-KWSSFAVKSPTE-----IVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSE 128 (365)
T ss_dssp EEEEBT-EEEEEEEEETTE-----EEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECT
T ss_pred EEEccc-eEEEEEECCCCC-----EEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCC
Confidence 455555 89999986 443 22222221 34566899999994 44553 689999999974
Q ss_pred -cccceeEeec-CCCCceEeEEEEEEcCCCcEEEEEc-cCCeEEEecCC-Cccce--eEEeCCCcCCcceEEEecCCCcc
Q 038702 64 -FENTAMIHHN-NQTGRWISSFRAIWGWDDSCIFIGN-MTRTVEVISPA-QRRSV--ATLQSPYISAIPCRFHAHPHQVG 137 (154)
Q Consensus 64 -~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~i~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 137 (154)
++........ ..... ....++|+|+|++++++. .++.|++|++. +++.. ..+........+..++|+| +++
T Consensus 129 ~g~~~~~~~~~~~~~~~--~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~sp-dg~ 205 (365)
T 1jof_A 129 TGKLEKNVQNYEYQENT--GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGN 205 (365)
T ss_dssp TCCEEEEEEEEECCTTC--CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSS
T ss_pred CCcCcceEeeEEeCCCC--cceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECC-CCC
Confidence 3332222210 01111 234678999999887765 36799999998 66543 2333211122246789999 777
Q ss_pred EEEEEc-CCCeEEEeeC
Q 038702 138 TLAGAT-GGGQVYVWTS 153 (154)
Q Consensus 138 ~l~~~~-~d~~i~~wd~ 153 (154)
++++++ .++.|.+|++
T Consensus 206 ~l~v~~~~~~~v~v~~~ 222 (365)
T 1jof_A 206 YLYALMEAGNRICEYVI 222 (365)
T ss_dssp EEEEEETTTTEEEEEEE
T ss_pred EEEEEECCCCeEEEEEE
Confidence 776655 5789999875
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=7.6e-14 Score=98.05 Aligned_cols=138 Identities=12% Similarity=0.124 Sum_probs=88.4
Q ss_pred CCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCC------CceE
Q 038702 7 DGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQT------GRWI 80 (154)
Q Consensus 7 d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~------~~~~ 80 (154)
++.|++||+.+++.... ..+ ...+..++|||+|+.|+.+. ++.|++|++.+++........... ..++
T Consensus 89 ~~~i~~~d~~~g~~~~~--~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v 162 (719)
T 1z68_A 89 TATYYIYDLSNGEFVRG--NEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWV 162 (719)
T ss_dssp EEEEEEEETTTTEECCS--SCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHH
T ss_pred ceEEEEEECCCCccccc--eec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccce
Confidence 68999999987653100 111 25688999999999999885 789999999877654332111100 0000
Q ss_pred -------eEEEEEEcCCCcEEEEEccCC----------------------------------eEEEecCCCccce--eEE
Q 038702 81 -------SSFRAIWGWDDSCIFIGNMTR----------------------------------TVEVISPAQRRSV--ATL 117 (154)
Q Consensus 81 -------~~~~~~~~~~~~~l~~~~~d~----------------------------------~i~i~~~~~~~~~--~~~ 117 (154)
....+.|+|||++|++++.|. .|++||+.+++.. ..+
T Consensus 163 ~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~ 242 (719)
T 1z68_A 163 YEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEV 242 (719)
T ss_dssp HHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEEC
T ss_pred eeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEc
Confidence 002568999999999988652 7889999987753 122
Q ss_pred eC-----CCcCCcceEEEecCCCccEEEEEcC--C--CeEEEee
Q 038702 118 QS-----PYISAIPCRFHAHPHQVGTLAGATG--G--GQVYVWT 152 (154)
Q Consensus 118 ~~-----~~~~~~~~~~~~~~~~~~~l~~~~~--d--~~i~~wd 152 (154)
.. .+. .....++|+| ++.++++... + ..|.+||
T Consensus 243 ~~~~~~~~~~-~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d 284 (719)
T 1z68_A 243 PVPAMIASSD-YYFSWLTWVT-DERVCLQWLKRVQNVSVLSICD 284 (719)
T ss_dssp CCCHHHHTSC-EEEEEEEESS-SSEEEEEEEESSTTEEEEEEEE
T ss_pred cCCccCCCCc-ceEEEeEEeC-CCeEEEEEeccccCeEEEEEEc
Confidence 11 111 2236789999 6777766432 2 3478888
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.50 E-value=6.9e-13 Score=92.42 Aligned_cols=115 Identities=8% Similarity=-0.078 Sum_probs=80.2
Q ss_pred ccCCeEEEEEcCCCCEEEEeeCC----------CeEEEEeccc------cccceeE-eecCCCCceEeEEEEEEcCCCcE
Q 038702 31 HKRAVHSAYFSPSGSSLATTSFD----------DTIGIWSGVN------FENTAMI-HHNNQTGRWISSFRAIWGWDDSC 93 (154)
Q Consensus 31 ~~~~v~~~~~~~~~~~l~~~~~d----------~~v~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 93 (154)
|...+..++|+|+|+.|++++.+ ..|.+||+.+ .+...+. .. .. ....+.|+|||++
T Consensus 128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~----~~--~~~~~~~SpDG~~ 201 (662)
T 3azo_A 128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDA----HR--FVTGPRLSPDGRQ 201 (662)
T ss_dssp TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSC----SS--EECCCEECTTSSE
T ss_pred CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecC----CC--cccCceECCCCCE
Confidence 66788999999999999998876 5899999987 4433222 11 11 2234679999999
Q ss_pred EEEEccC--------CeEEEecCC-Ccc--ceeEEeCCCcCCcceEEEecCCCccEEEEEcCCC--eEEEeeC
Q 038702 94 IFIGNMT--------RTVEVISPA-QRR--SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGG--QVYVWTS 153 (154)
Q Consensus 94 l~~~~~d--------~~i~i~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~--~i~~wd~ 153 (154)
|+..+.+ ..|++||+. +++ ....+...+... ...+.|+| +++++++++.++ .|.+||+
T Consensus 202 la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~-~~~~~~sp-dg~l~~~~~~~~~~~l~~~~~ 272 (662)
T 3azo_A 202 AVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEA-IAQAEWAP-DGSLIVATDRTGWWNLHRVDP 272 (662)
T ss_dssp EEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBC-EEEEEECT-TSCEEEEECTTSSCEEEEECT
T ss_pred EEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCce-EcceEECC-CCeEEEEECCCCCeEEEEEEC
Confidence 9888755 379999998 561 233333222222 25789999 777888888888 6666664
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=4.9e-11 Score=82.00 Aligned_cols=141 Identities=14% Similarity=0.114 Sum_probs=101.8
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEecc--ccccceeEeecCCCCce
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV--NFENTAMIHHNNQTGRW 79 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~--~~~~~~~~~~~~~~~~~ 79 (154)
++...++.|.++|..+++ ..........+..+.|+|+|+++++++.|+.|.+||+. +.+....+....
T Consensus 171 V~~~~~~~V~viD~~t~~-----v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~----- 240 (567)
T 1qks_A 171 VTLRDAGQIALIDGSTYE-----IKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS----- 240 (567)
T ss_dssp EEETTTTEEEEEETTTCC-----EEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-----
T ss_pred EEeCCCCeEEEEECCCCe-----EEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-----
Confidence 566788999999998876 44444455567899999999999999999999999995 554433332211
Q ss_pred EeEEEEEEc----CCCcEEEEEcc-CCeEEEecCCCccceeEEeCCCc---------CCcceEEEecCCCccEEEEEcCC
Q 038702 80 ISSFRAIWG----WDDSCIFIGNM-TRTVEVISPAQRRSVATLQSPYI---------SAIPCRFHAHPHQVGTLAGATGG 145 (154)
Q Consensus 80 ~~~~~~~~~----~~~~~l~~~~~-d~~i~i~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~d 145 (154)
....++++ |+|+++++++. ++.+.++|..+.+.+..+..... ......+..++..+.+++....+
T Consensus 241 -~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~ 319 (567)
T 1qks_A 241 -EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET 319 (567)
T ss_dssp -EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred -CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCC
Confidence 23367889 69998887764 48999999999998887763211 11224566666556667777778
Q ss_pred CeEEEeeC
Q 038702 146 GQVYVWTS 153 (154)
Q Consensus 146 ~~i~~wd~ 153 (154)
|.|.++|.
T Consensus 320 g~v~~vd~ 327 (567)
T 1qks_A 320 GKILLVDY 327 (567)
T ss_dssp TEEEEEET
T ss_pred CeEEEEec
Confidence 89888874
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=8.5e-11 Score=74.04 Aligned_cols=136 Identities=8% Similarity=0.027 Sum_probs=93.3
Q ss_pred CCcEEEEEccCCCCCCCCCceee--cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEE
Q 038702 7 DGTACIWDLRSMATDKPEPTKVL--SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFR 84 (154)
Q Consensus 7 d~~v~vw~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
++.|.+||. +++ ..... .+...+..++++|+++.+++...++.|.+||... +....+..... ......
T Consensus 99 ~~~i~~~d~-~g~-----~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~~~---~~~p~~ 168 (286)
T 1q7f_A 99 THQIQIYNQ-YGQ-----FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLHKFGCSKH---LEFPNG 168 (286)
T ss_dssp GCEEEEECT-TSC-----EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEEEECTTT---CSSEEE
T ss_pred CCEEEEECC-CCc-----EEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-CEEEEeCCCCc---cCCcEE
Confidence 678888883 333 22222 3445789999999999888888889999999653 22222221111 112346
Q ss_pred EEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCC-eEEEeeCC
Q 038702 85 AIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGG-QVYVWTSD 154 (154)
Q Consensus 85 ~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~~wd~~ 154 (154)
++++++++++++...++.|++||. .++.+..+........+..++++| +++++++...++ .|.+||.+
T Consensus 169 i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~-~G~l~v~~~~~~~~i~~~~~~ 237 (286)
T 1q7f_A 169 VVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQD 237 (286)
T ss_dssp EEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTT
T ss_pred EEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECC-CCCEEEEeCCCCEEEEEECCC
Confidence 789999998888888999999997 455555564332223346789998 778888888776 99999863
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2.5e-12 Score=89.59 Aligned_cols=132 Identities=14% Similarity=0.073 Sum_probs=88.7
Q ss_pred CcEEEEEccC------CCCCCCCCceee-cccCCeEEEEEcCCCCEEEEeeCC--------CeEEEEecc-cc---ccce
Q 038702 8 GTACIWDLRS------MATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATTSFD--------DTIGIWSGV-NF---ENTA 68 (154)
Q Consensus 8 ~~v~vw~~~~------~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d--------~~v~~~~~~-~~---~~~~ 68 (154)
..|++||+.. +. ...+. .+...+..++|+|+|++|+.++.+ ..|.+||+. ++ +...
T Consensus 161 ~~i~~~~~~~~~~~~~~~-----~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~ 235 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSA-----VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRT 235 (662)
T ss_dssp EEEEEEETTSTTTTCGGG-----SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEE
T ss_pred eEEEEEECCCCccccCCc-----eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEE
Confidence 5789999876 33 34444 556778889999999999887755 379999998 44 2222
Q ss_pred eEeecCCCCceEeEEEEEEcCCCcEEEEEccCC--eEEEecCCCccceeEEeCCCcCCc-------ceEEEecCCCccEE
Q 038702 69 MIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTR--TVEVISPAQRRSVATLQSPYISAI-------PCRFHAHPHQVGTL 139 (154)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~--~i~i~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l 139 (154)
+..... . ....+.|+|+|++++++..++ .|.+||+.+++...... ++.... ...++++| ++.++
T Consensus 236 l~~~~~---~--~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~-~~~~~~~p~w~~~~~~~~~~~-~~~~~ 308 (662)
T 3azo_A 236 LLGGPE---E--AIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCR-REEEFAGPLWTPGMRWFAPLA-NGLIA 308 (662)
T ss_dssp EEEETT---B--CEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSC-CSSBSSCCCCSTTCCSEEECT-TSCEE
T ss_pred eCCCCC---c--eEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccc-ccccccCccccccCceEeEeC-CCEEE
Confidence 222211 1 234678999999888888888 67777776666443332 221110 13567778 77888
Q ss_pred EEEcCCCeEEEee
Q 038702 140 AGATGGGQVYVWT 152 (154)
Q Consensus 140 ~~~~~d~~i~~wd 152 (154)
++++. +.+++|.
T Consensus 309 ~~~~~-~~~~l~~ 320 (662)
T 3azo_A 309 VVHGK-GAAVLGI 320 (662)
T ss_dssp EEEBS-SSCEEEE
T ss_pred EEEEc-CccEEEE
Confidence 88888 9888883
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.3e-10 Score=74.88 Aligned_cols=141 Identities=10% Similarity=0.037 Sum_probs=97.5
Q ss_pred CcEEEEEccCCCCCCCCCceee--cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccc-cceeEeecCC----CCceE
Q 038702 8 GTACIWDLRSMATDKPEPTKVL--SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFE-NTAMIHHNNQ----TGRWI 80 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~-~~~~~~~~~~----~~~~~ 80 (154)
+.|.+||..+++ ..... ++-.....++++|+|+++++...++.|++|+..... ....+..... .+...
T Consensus 69 ~~i~~~d~~~g~-----~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~ 143 (329)
T 3fvz_A 69 DTILVIDPNNAE-----ILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFC 143 (329)
T ss_dssp CCEEEECTTTCC-----EEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCS
T ss_pred CcEEEEECCCCe-----EEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccC
Confidence 578899887655 33333 344578999999999988888889999999986543 2332321110 11122
Q ss_pred eEEEEEEcC-CCcEEEEEc-cCCeEEEecCCCccceeEEeCCC--------cCCcceEEEecCCCccEEEEEcCCCeEEE
Q 038702 81 SSFRAIWGW-DDSCIFIGN-MTRTVEVISPAQRRSVATLQSPY--------ISAIPCRFHAHPHQVGTLAGATGGGQVYV 150 (154)
Q Consensus 81 ~~~~~~~~~-~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~d~~i~~ 150 (154)
....++++| ++.++++.+ .++.|++|+ .+++.+..+.... ....+..++++|..+.++++...++.|++
T Consensus 144 ~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~ 222 (329)
T 3fvz_A 144 QPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQC 222 (329)
T ss_dssp SEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEE
Confidence 345678999 788888876 689999999 5666666654211 11224688999944788888889999999
Q ss_pred eeCC
Q 038702 151 WTSD 154 (154)
Q Consensus 151 wd~~ 154 (154)
||++
T Consensus 223 ~~~~ 226 (329)
T 3fvz_A 223 FKTD 226 (329)
T ss_dssp EETT
T ss_pred EECC
Confidence 9974
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.8e-11 Score=75.62 Aligned_cols=141 Identities=11% Similarity=-0.043 Sum_probs=98.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeeccc-CCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHK-RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
|++++.|+.|.+||..+++. .-++..+. ..+.++.++|+|+.++ +.++.|..||. +++....+... ...
T Consensus 8 lv~~~~~~~v~~~d~~tG~~----~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~--~~~- 77 (276)
T 3no2_A 8 LVGGSGWNKIAIINKDTKEI----VWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAP--AGC- 77 (276)
T ss_dssp EEECTTCSEEEEEETTTTEE----EEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECC--TTC-
T ss_pred EEeeCCCCEEEEEECCCCeE----EEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCC--CCc-
Confidence 47889999999999878774 33443443 4788999999999888 45778999998 56554444321 111
Q ss_pred EeEEEEEEcCCCcEEEEEcc-CCeEEEecCCCccceeEEeCCCc--C--CcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 80 ISSFRAIWGWDDSCIFIGNM-TRTVEVISPAQRRSVATLQSPYI--S--AIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~-d~~i~i~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
....+.+.++|+++++.+. ++.+..+|. +++.+..+..... . .....++..+ +++++++...++.|..||.+
T Consensus 78 -~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~~d~~ 154 (276)
T 3no2_A 78 -EMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFATSEVREIAPN 154 (276)
T ss_dssp -EEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETTTTEEEEECTT
T ss_pred -cccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECC-CCCEEEEecCCCEEEEECCC
Confidence 2335678999999998876 777888886 6777666652111 0 1112345667 78899999999999999864
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-11 Score=81.24 Aligned_cols=132 Identities=9% Similarity=0.007 Sum_probs=89.2
Q ss_pred CeeecCCCcEEEEEccCCC------CCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecC
Q 038702 1 MATSSTDGTACIWDLRSMA------TDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNN 74 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~ 74 (154)
+++|+.+ .+.+|++.... ...........+.. |+.++| +++.|+++ .++.|++||+++...........
T Consensus 52 l~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~ 126 (388)
T 1xip_A 52 FVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFE 126 (388)
T ss_dssp EEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECS
T ss_pred EEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceee
Confidence 3566666 46669876432 01111223446777 999999 89999998 88999999998876443332211
Q ss_pred CCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 75 QTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
..+. .+.+.+. .++++..||.|.+||+.+++... + .. . ..+++|+| ++ ++.|..||++++|+.
T Consensus 127 ---~~v~--~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-~---~~-~-Vs~v~WSp-kG--~~vg~~dg~i~~~~~ 189 (388)
T 1xip_A 127 ---KPVF--QLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-L---AQ-N-VTSFDVTN-SQ--LAVLLKDRSFQSFAW 189 (388)
T ss_dssp ---SCEE--EEEECSS--EEEEEETTSEEEEEETTTCCEEE-E---EE-S-EEEEEECS-SE--EEEEETTSCEEEEEE
T ss_pred ---ccee--eEEecCC--CEEEEECCCCEEEEEccCCcccc-c---cC-C-ceEEEEcC-Cc--eEEEEcCCcEEEEcC
Confidence 1122 3344433 38888999999999999877643 2 12 2 36899999 66 678999999999975
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.39 E-value=3.5e-12 Score=90.12 Aligned_cols=115 Identities=10% Similarity=-0.007 Sum_probs=82.3
Q ss_pred CCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccC---------CeE
Q 038702 33 RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMT---------RTV 103 (154)
Q Consensus 33 ~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------~~i 103 (154)
....++.|+|++++++++ |+.|++||+.+++....+.........+..-...|+|||++|+.++.+ +.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 345689999999888886 999999999988766554322211111111135789999999998876 566
Q ss_pred EEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 104 EVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 104 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.+||+.+++... +..+.. .....+|+| +++.|+.+ .|+.|++||++
T Consensus 95 ~~~d~~~~~~~~-l~~~~~--~~~~~~~SP-dG~~la~~-~~~~i~~~~~~ 140 (740)
T 4a5s_A 95 DIYDLNKRQLIT-EERIPN--NTQWVTWSP-VGHKLAYV-WNNDIYVKIEP 140 (740)
T ss_dssp EEEETTTTEECC-SSCCCT--TEEEEEECS-STTCEEEE-ETTEEEEESST
T ss_pred EEEECCCCcEEE-cccCCC--cceeeEECC-CCCEEEEE-ECCeEEEEECC
Confidence 799999987543 433322 236789999 88888887 56899999863
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.38 E-value=1e-11 Score=81.04 Aligned_cols=136 Identities=13% Similarity=0.120 Sum_probs=90.6
Q ss_pred CCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEee----------CCCeEEEEeccccccceeEeecCC
Q 038702 6 TDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTS----------FDDTIGIWSGVNFENTAMIHHNNQ 75 (154)
Q Consensus 6 ~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~v~~~~~~~~~~~~~~~~~~~ 75 (154)
.|+.|.+||..+++. ...+..+..+ .++|+|+++++++++ .++.|.+||..+.+....+.....
T Consensus 29 ~d~~v~v~D~~t~~~----~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~ 102 (361)
T 2oiz_A 29 TESRVHVYDYTNGKF----LGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPK 102 (361)
T ss_dssp GGCEEEEEETTTCCE----EEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTT
T ss_pred ccCeEEEEECCCCeE----EEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcc
Confidence 478999999877653 2333344444 899999999999886 367899999987766554432110
Q ss_pred ---CCceEeEEEEEEcCCCcEEEEEcc--CCeEEEecCCCccceeE-EeCCCcCCcceEEEecCCCccEEEEEcCCCeEE
Q 038702 76 ---TGRWISSFRAIWGWDDSCIFIGNM--TRTVEVISPAQRRSVAT-LQSPYISAIPCRFHAHPHQVGTLAGATGGGQVY 149 (154)
Q Consensus 76 ---~~~~~~~~~~~~~~~~~~l~~~~~--d~~i~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 149 (154)
.+. ....++++|+|++|+++.. ++.|.+||+.+++.+.. +.... . ..+.+.|.....+++.+.||.+.
T Consensus 103 ~~~~g~--~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~--~--~~v~~~p~~~~~~~~~~~dg~~~ 176 (361)
T 2oiz_A 103 RVQGLN--YDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG--C--WSVIPQPNRPRSFMTICGDGGLL 176 (361)
T ss_dssp BCCBCC--CGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT--E--EEEEECTTSSSEEEEEETTSSEE
T ss_pred ccccCC--CcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC--c--ceeEEcCCCCeeEEEECCCCcEE
Confidence 011 1124578999999998874 57899999999988776 54221 1 12345553445666777777777
Q ss_pred EeeC
Q 038702 150 VWTS 153 (154)
Q Consensus 150 ~wd~ 153 (154)
+|++
T Consensus 177 ~v~~ 180 (361)
T 2oiz_A 177 TINL 180 (361)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6654
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=4.5e-11 Score=76.98 Aligned_cols=137 Identities=12% Similarity=0.045 Sum_probs=92.5
Q ss_pred CCCcEEEEEccCCCCCCCCCceeec-----------ccCCeEEEEEcCC-CCEEEEeeCCCeEEEEeccccccceeEeec
Q 038702 6 TDGTACIWDLRSMATDKPEPTKVLS-----------HKRAVHSAYFSPS-GSSLATTSFDDTIGIWSGVNFENTAMIHHN 73 (154)
Q Consensus 6 ~d~~v~vw~~~~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~-~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~ 73 (154)
.++.|++|+.. +. .....+ +-.....++++|+ ++++++...++.|++|+..+++....+...
T Consensus 164 ~~~~I~~~~~~-g~-----~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~ 237 (329)
T 3fvz_A 164 CNSRIVQFSPS-GK-----FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA 237 (329)
T ss_dssp SCCEEEEECTT-SC-----EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT
T ss_pred CCCeEEEEcCC-CC-----EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc
Confidence 47888888843 32 232222 2234889999998 777788888999999999866655444322
Q ss_pred CCCCceEeEEEEEEcCCCcEEEE-------EccCCeEEEecCCCccceeEEeCC-CcCCcceEEEecCCCccEEEEEcCC
Q 038702 74 NQTGRWISSFRAIWGWDDSCIFI-------GNMTRTVEVISPAQRRSVATLQSP-YISAIPCRFHAHPHQVGTLAGATGG 145 (154)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~-------~~~d~~i~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d 145 (154)
. .+. ....++++| +..+.+ ...+..|++|+..+++.+..+... .....+..++++| ++.++++...+
T Consensus 238 ~-~~~--~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~-dG~lyvad~~~ 312 (329)
T 3fvz_A 238 S-FGR--NVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASE-DGTVYIGDAHT 312 (329)
T ss_dssp T-TTT--CEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECT-TSEEEEEESSS
T ss_pred c-cCC--CcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECC-CCCEEEEECCC
Confidence 1 121 233567788 433333 334458999999999988877421 1223346889999 77889999999
Q ss_pred CeEEEeeC
Q 038702 146 GQVYVWTS 153 (154)
Q Consensus 146 ~~i~~wd~ 153 (154)
+.|++|++
T Consensus 313 ~~I~~~~~ 320 (329)
T 3fvz_A 313 NTVWKFTL 320 (329)
T ss_dssp CCEEEEEE
T ss_pred CEEEEEeC
Confidence 99999986
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-10 Score=76.19 Aligned_cols=64 Identities=13% Similarity=0.140 Sum_probs=50.7
Q ss_pred EEEcCCCcEEEEEcc-----------CCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 85 AIWGWDDSCIFIGNM-----------TRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 85 ~~~~~~~~~l~~~~~-----------d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
++++|++..++.... .+.|.+||+.+++.+.++..+. +..++++| ++++|++++. +.|.+||.
T Consensus 259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~----p~~ia~sp-dg~~l~v~n~-~~v~v~D~ 332 (361)
T 2oiz_A 259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD----ALSMTIDQ-QRNLMLTLDG-GNVNVYDI 332 (361)
T ss_dssp EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT----CCEEEEET-TTTEEEEECS-SCEEEEEC
T ss_pred EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC----eeEEEECC-CCCEEEEeCC-CeEEEEEC
Confidence 467788777666543 3489999999999999988655 46889999 7788888776 99999996
Q ss_pred C
Q 038702 154 D 154 (154)
Q Consensus 154 ~ 154 (154)
+
T Consensus 333 ~ 333 (361)
T 2oiz_A 333 S 333 (361)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.32 E-value=5.5e-10 Score=71.75 Aligned_cols=136 Identities=7% Similarity=-0.085 Sum_probs=89.9
Q ss_pred cCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEE
Q 038702 5 STDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFR 84 (154)
Q Consensus 5 ~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
+.++.++.|.- .. ...+..+...+.+++|+|++++++++..++.|.+||..+.+........ .. ....
T Consensus 24 ~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~---~~--~~~~ 91 (333)
T 2dg1_A 24 ISESELQTITA---EP----WLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSH---KA--NPAA 91 (333)
T ss_dssp CCGGGSCEEEC---EE----EEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECS---SS--SEEE
T ss_pred eecccCccccc---ce----eEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCC---CC--Ccce
Confidence 45666677721 11 2333456667899999999998888888999999999876654433211 11 2346
Q ss_pred EEEcCCCcEEEEEccC----CeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcC------CCeEEEeeC
Q 038702 85 AIWGWDDSCIFIGNMT----RTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATG------GGQVYVWTS 153 (154)
Q Consensus 85 ~~~~~~~~~l~~~~~d----~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------d~~i~~wd~ 153 (154)
++++++++++++...+ +.|.+||..+++....+...........++++| ++.++++... .+.|..+|.
T Consensus 92 i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~ 169 (333)
T 2dg1_A 92 IKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSP 169 (333)
T ss_dssp EEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECT
T ss_pred EEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeC
Confidence 6889999988877666 689999998776543333222223346788999 7777776654 356666654
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.4e-10 Score=76.03 Aligned_cols=121 Identities=11% Similarity=-0.030 Sum_probs=85.7
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEe
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWIS 81 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (154)
+++ .++.|++||+++... ......|...+.++.+.+. .+++++.||.+.+||+.+..... ... .
T Consensus 101 ~v~-~~~~l~v~dv~sl~~----~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~---~~~------~ 164 (388)
T 1xip_A 101 LVS-TRNALYSLDLEELSE----FRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ---LAQ------N 164 (388)
T ss_dssp EEE-ESSEEEEEESSSTTC----EEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE---EEE------S
T ss_pred EEE-cCCcEEEEEchhhhc----cCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc---ccC------C
Confidence 455 789999999987653 3344467778888887654 38889999999999998766432 111 2
Q ss_pred EEEEEEcCCCcEEEEEccCCeEEEecCCCccc--eeEEeCC-------CcCCcceEEEecCCCccEEEE
Q 038702 82 SFRAIWGWDDSCIFIGNMTRTVEVISPAQRRS--VATLQSP-------YISAIPCRFHAHPHQVGTLAG 141 (154)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~--~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~ 141 (154)
+.+++|+|+| ++.|..||++++|+....+. ..++..+ .......++.|.+ +..++++
T Consensus 165 Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~-~~~flv~ 230 (388)
T 1xip_A 165 VTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILS-PQDFLAV 230 (388)
T ss_dssp EEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESS-SSEEEEE
T ss_pred ceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEec-CCeEEEE
Confidence 3467999999 67788999999998877664 5555211 0124447889998 5566654
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.6e-10 Score=74.58 Aligned_cols=117 Identities=13% Similarity=0.120 Sum_probs=80.6
Q ss_pred CCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCC---C--eEEEEeccccccceeEeecCCCCceEe
Q 038702 7 DGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFD---D--TIGIWSGVNFENTAMIHHNNQTGRWIS 81 (154)
Q Consensus 7 d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~--~v~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (154)
++.|.+||+..++ ...+ ..+..++|+|+|++|+..+.+ + .|.+|++.+++.........
T Consensus 42 ~~~l~~~d~~~~~-----~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~------- 105 (347)
T 2gop_A 42 ENTIVIENLKNNA-----RRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN------- 105 (347)
T ss_dssp EEEEEEEETTTCC-----EEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-------
T ss_pred cceEEEEeCCCCc-----eEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-------
Confidence 5678888887654 2222 567889999999999887654 3 37777887765444333211
Q ss_pred EEEEEEcCCCcEEEEEccC---------------------------CeEEEecCCCccceeEEeCCCcCCcceEEEecCC
Q 038702 82 SFRAIWGWDDSCIFIGNMT---------------------------RTVEVISPAQRRSVATLQSPYISAIPCRFHAHPH 134 (154)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~d---------------------------~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (154)
...+.|+|+++.|+.++.+ ..|++||+.+++.+..+.. . ....+.|+|
T Consensus 106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~---~~~~~~~sp- 180 (347)
T 2gop_A 106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P---RFSSGIWHR- 180 (347)
T ss_dssp EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E---TTCEEEEET-
T ss_pred ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C---CcccccCCC-
Confidence 3356899999988887642 5789999988876455543 2 235789999
Q ss_pred CccEEEEEcCC
Q 038702 135 QVGTLAGATGG 145 (154)
Q Consensus 135 ~~~~l~~~~~d 145 (154)
++ +++++..+
T Consensus 181 dg-~~~~~~~~ 190 (347)
T 2gop_A 181 DK-IVVNVPHR 190 (347)
T ss_dssp TE-EEEEEECC
T ss_pred Ce-EEEEEecc
Confidence 77 77777554
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.8e-10 Score=74.22 Aligned_cols=138 Identities=9% Similarity=-0.006 Sum_probs=94.5
Q ss_pred CCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCC----------CeEEEEeccccccceeEeecCC
Q 038702 6 TDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFD----------DTIGIWSGVNFENTAMIHHNNQ 75 (154)
Q Consensus 6 ~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------~~v~~~~~~~~~~~~~~~~~~~ 75 (154)
.++.|.++|+.+++ .............+.++|+|++++++..+ +.|.++|..+.+....+....
T Consensus 150 ~~~~v~viD~~t~~-----~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~- 223 (328)
T 3dsm_A 150 YQNRILKIDTETDK-----VVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL- 223 (328)
T ss_dssp TCCEEEEEETTTTE-----EEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT-
T ss_pred CCCEEEEEECCCCe-----EEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC-
Confidence 47899999998765 33333333445788999999877776654 789999998876554433211
Q ss_pred CCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEE----cCCCeEEEe
Q 038702 76 TGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGA----TGGGQVYVW 151 (154)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~d~~i~~w 151 (154)
+. ....++++|++++++++.. .|.+||..+++.............+..++++|.++.++++. ..++.|.+|
T Consensus 224 -g~--~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~ 298 (328)
T 3dsm_A 224 -GD--WPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRY 298 (328)
T ss_dssp -TC--CCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEE
T ss_pred -CC--CceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEE
Confidence 11 2235789999998887764 89999998877532111111123456789998677777887 678999999
Q ss_pred eCC
Q 038702 152 TSD 154 (154)
Q Consensus 152 d~~ 154 (154)
|.+
T Consensus 299 d~~ 301 (328)
T 3dsm_A 299 SPQ 301 (328)
T ss_dssp CTT
T ss_pred CCC
Confidence 874
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.5e-10 Score=74.71 Aligned_cols=140 Identities=13% Similarity=0.095 Sum_probs=90.5
Q ss_pred eecC-CCc--EEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCc
Q 038702 3 TSST-DGT--ACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGR 78 (154)
Q Consensus 3 ~~~~-d~~--v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (154)
.++. ++. |.+||+.+++ ...+. ++...+..+.|+|+++.|+.++.++.+.+||+.+++......... .
T Consensus 52 ~~~~~~g~~~l~~~d~~~g~-----~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~---~ 123 (388)
T 3pe7_A 52 FGGAFDGPWNYYLLDLNTQV-----ATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPA---E 123 (388)
T ss_dssp EEECTTSSCEEEEEETTTCE-----EEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCT---T
T ss_pred EEEcCCCCceEEEEeCCCCc-----eEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechh---h
Confidence 3444 563 7777877655 33333 455555577899999999999999999999999887655443221 1
Q ss_pred eEeEEEEEEcCCCcEEEEE----------------------ccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCc
Q 038702 79 WISSFRAIWGWDDSCIFIG----------------------NMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQV 136 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~----------------------~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (154)
........++|++.+++.. ..+..|.+||+.+++...... +.. ....+.|+|.++
T Consensus 124 ~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~--~~~~~~~sp~dg 200 (388)
T 3pe7_A 124 WVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQ-ENQ--WLGHPIYRPYDD 200 (388)
T ss_dssp EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEE-ESS--CEEEEEEETTEE
T ss_pred cccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeec-CCc--cccccEECCCCC
Confidence 2222233458999888742 234679999999887544433 222 225788998445
Q ss_pred cEEEEEcCC------CeEEEeeC
Q 038702 137 GTLAGATGG------GQVYVWTS 153 (154)
Q Consensus 137 ~~l~~~~~d------~~i~~wd~ 153 (154)
..|+....+ ..|.++|+
T Consensus 201 ~~l~~~~~~~~~~~~~~l~~~d~ 223 (388)
T 3pe7_A 201 STVAFCHEGPHDLVDARMWLINE 223 (388)
T ss_dssp EEEEEEECSCTTTSSCSEEEEET
T ss_pred CEEEEEEecCCCCCcceEEEEeC
Confidence 666655543 36777775
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1.6e-09 Score=69.53 Aligned_cols=140 Identities=11% Similarity=0.011 Sum_probs=92.3
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCCCEEEEeeCC----CeEEEEeccccccceeEeecCCC
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATTSFD----DTIGIWSGVNFENTAMIHHNNQT 76 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d----~~v~~~~~~~~~~~~~~~~~~~~ 76 (154)
+++..++.|.+||..+++ ...+. .+...+.+++++|+++++++...+ +.|.+||..+.......... ..
T Consensus 60 ~~~~~~~~i~~~d~~~~~-----~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~ 133 (333)
T 2dg1_A 60 LLDVFEGNIFKINPETKE-----IKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDL-ST 133 (333)
T ss_dssp EEETTTCEEEEECTTTCC-----EEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSS-SS
T ss_pred EEECCCCEEEEEeCCCCc-----EEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccC-cc
Confidence 356678889999887654 33333 566789999999999988877666 68999998876554332211 11
Q ss_pred CceEeEEEEEEcCCCcEEEEEcc------CCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCcc-EEEEEcCCCeEE
Q 038702 77 GRWISSFRAIWGWDDSCIFIGNM------TRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVG-TLAGATGGGQVY 149 (154)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~------d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~ 149 (154)
.. ....++++|+++++++... .+.|..++..+++...... .. .....++++| +++ ++++.+.++.|.
T Consensus 134 ~~--~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~--~~~~~i~~~~-dg~~l~v~~~~~~~i~ 207 (333)
T 2dg1_A 134 AY--CIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-NI--SVANGIALST-DEKVLWVTETTANRLH 207 (333)
T ss_dssp CC--CEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE-EE--SSEEEEEECT-TSSEEEEEEGGGTEEE
T ss_pred CC--cccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec-CC--CcccceEECC-CCCEEEEEeCCCCeEE
Confidence 11 2345688999988877653 3567777766554332222 11 1235788999 666 456666788999
Q ss_pred EeeC
Q 038702 150 VWTS 153 (154)
Q Consensus 150 ~wd~ 153 (154)
+||+
T Consensus 208 ~~d~ 211 (333)
T 2dg1_A 208 RIAL 211 (333)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9986
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.3e-10 Score=74.15 Aligned_cols=136 Identities=11% Similarity=0.102 Sum_probs=88.0
Q ss_pred cCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC-CCCEEEEeeCC------CeEEEEeccccccceeEeecCCCC
Q 038702 5 STDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFD------DTIGIWSGVNFENTAMIHHNNQTG 77 (154)
Q Consensus 5 ~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------~~v~~~~~~~~~~~~~~~~~~~~~ 77 (154)
..+..|.+||+.+++ ...+..+...+..+.|+| +++.++..+.+ ..|.+|++............ ..
T Consensus 165 ~~~~~l~~~d~~~g~-----~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~--~~ 237 (396)
T 3c5m_A 165 NPTCRLIKVDIETGE-----LEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHA--EG 237 (396)
T ss_dssp CCCEEEEEEETTTCC-----EEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCC--TT
T ss_pred CCcceEEEEECCCCc-----EEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccC--CC
Confidence 345678999987754 344456777899999999 78877766543 35888887655433222210 01
Q ss_pred ceEeEEEEEEcCCCcEEEEEccC-----CeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEc---------
Q 038702 78 RWISSFRAIWGWDDSCIFIGNMT-----RTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT--------- 143 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~d-----~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------- 143 (154)
.....+.|+|++++|+..+.+ +.|++||+.+++........ .. . ..|+|.++.+++.++
T Consensus 238 --~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~---~~-~-~~~s~~dg~~l~~~~~~~p~~~~~ 310 (396)
T 3c5m_A 238 --ESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP---PC-S-HLMSNFDGSLMVGDGCDAPVDVAD 310 (396)
T ss_dssp --EEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC---SE-E-EEEECSSSSEEEEEECCC------
T ss_pred --ccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC---CC-C-CCccCCCCceEEEecCCcceeecc
Confidence 123457899999988777654 45999999887654332211 11 2 678874556776654
Q ss_pred -------CCCeEEEeeCC
Q 038702 144 -------GGGQVYVWTSD 154 (154)
Q Consensus 144 -------~d~~i~~wd~~ 154 (154)
.+..|++||++
T Consensus 311 ~~~~~~~~~~~i~~~d~~ 328 (396)
T 3c5m_A 311 ADSYNIENDPFLYVLNTK 328 (396)
T ss_dssp ----CCCCCCEEEEEETT
T ss_pred ccccccCCCCcEEEEecc
Confidence 34789999863
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.7e-10 Score=81.30 Aligned_cols=116 Identities=10% Similarity=-0.017 Sum_probs=80.3
Q ss_pred ccCCeEEEEEcCCCCEEEEeeCCC-----eEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCe---
Q 038702 31 HKRAVHSAYFSPSGSSLATTSFDD-----TIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRT--- 102 (154)
Q Consensus 31 ~~~~v~~~~~~~~~~~l~~~~~d~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~--- 102 (154)
|...+..++|||+|++|+.+..++ .|++||+.+++.......... ...++|+||++.|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~------~~~~~wspDg~~l~~~~~~~~~~~ 196 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVK------FSCMAWTHDGKGMFYNAYPQQDGK 196 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEEC------SCCEEECTTSSEEEEEECCCCSSC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcc------cceEEEEeCCCEEEEEEECCcccc
Confidence 334688999999999998765533 899999998776543221111 124689999999998887765
Q ss_pred -------------EEEecCCCccce--eEEeCCCcCCcceEEEecCCCccEEEEEcC-----CCeEEEeeC
Q 038702 103 -------------VEVISPAQRRSV--ATLQSPYISAIPCRFHAHPHQVGTLAGATG-----GGQVYVWTS 153 (154)
Q Consensus 103 -------------i~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----d~~i~~wd~ 153 (154)
|++|++.+++.. ..+...........+.|+| ++++|+..+. +..|++||+
T Consensus 197 ~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~ 266 (710)
T 2xdw_A 197 SDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDL 266 (710)
T ss_dssp CSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEG
T ss_pred ccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEEC
Confidence 999999887643 2223222222235788999 7787776654 568999986
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.28 E-value=5.2e-11 Score=77.88 Aligned_cols=110 Identities=17% Similarity=0.137 Sum_probs=72.6
Q ss_pred ceeecccCCeEE-----EEEcCCCCEEEEeeC-CC--eEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEE
Q 038702 26 TKVLSHKRAVHS-----AYFSPSGSSLATTSF-DD--TIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIG 97 (154)
Q Consensus 26 ~~~~~~~~~v~~-----~~~~~~~~~l~~~~~-d~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 97 (154)
..+..|...... .+|+|+|++|+.++. ++ .|.+||+.+++.......... . .+...|+|+++.|+.+
T Consensus 24 ~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~---~--~~~~~~spdg~~l~~~ 98 (388)
T 3pe7_A 24 TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGD---N--TFGGFLSPDDDALFYV 98 (388)
T ss_dssp EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCB---C--SSSCEECTTSSEEEEE
T ss_pred EEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCC---C--ccceEEcCCCCEEEEE
Confidence 333355555555 789999999988887 67 478888877665443322111 1 1124699999999999
Q ss_pred ccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEE
Q 038702 98 NMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAG 141 (154)
Q Consensus 98 ~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 141 (154)
+.++.|++||+.+++.......+........+..+| ++.+++.
T Consensus 99 ~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~ 141 (388)
T 3pe7_A 99 KDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANS-DCTKLVG 141 (388)
T ss_dssp ETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECT-TSSEEEE
T ss_pred eCCCeEEEEECCCCcceeeeechhhcccccceeECC-CCCeecc
Confidence 999999999999988766555443222212334577 6677663
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.27 E-value=5.9e-10 Score=71.81 Aligned_cols=141 Identities=11% Similarity=0.072 Sum_probs=92.5
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCC--ce
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTG--RW 79 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~--~~ 79 (154)
++...++.|.+||..+++ .............++++++++.+++...++.|.++|..+.+....+......+ ..
T Consensus 58 v~~~~~~~v~viD~~t~~-----~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~ 132 (328)
T 3dsm_A 58 IVVNNSHVIFAIDINTFK-----EVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGS 132 (328)
T ss_dssp EEEGGGTEEEEEETTTCC-----EEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCB
T ss_pred EEEcCCCEEEEEECcccE-----EEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCC
Confidence 345567899999998766 33333445678899999988544444489999999999877654443221000 01
Q ss_pred EeEEEEEEcCCCcEEEEEc-cCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCC----------CeE
Q 038702 80 ISSFRAIWGWDDSCIFIGN-MTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGG----------GQV 148 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----------~~i 148 (154)
.. .+++ .++..+++.. .++.|.++|+.+++.+..+.... .+..+.++| ++++++++..+ +.|
T Consensus 133 p~--~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~---~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v 205 (328)
T 3dsm_A 133 TE--QMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGI---QPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSL 205 (328)
T ss_dssp CC--CEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSS---CBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEE
T ss_pred cc--eEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCC---CccceEEcC-CCCEEEEECCCccCCccccCCceE
Confidence 11 2234 3444444443 48899999999998887776422 224677888 77777776654 789
Q ss_pred EEeeCC
Q 038702 149 YVWTSD 154 (154)
Q Consensus 149 ~~wd~~ 154 (154)
.++|.+
T Consensus 206 ~~id~~ 211 (328)
T 3dsm_A 206 YRIDAE 211 (328)
T ss_dssp EEEETT
T ss_pred EEEECC
Confidence 999863
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=4.9e-10 Score=78.98 Aligned_cols=135 Identities=5% Similarity=-0.093 Sum_probs=86.5
Q ss_pred cEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCe----------------EEEEeccccccc-eeEe
Q 038702 9 TACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDT----------------IGIWSGVNFENT-AMIH 71 (154)
Q Consensus 9 ~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~----------------v~~~~~~~~~~~-~~~~ 71 (154)
.|++||+.+++. .........+..++|+|+|+.|+.++.++. |.+|++.+.... ....
T Consensus 152 ~i~v~d~~tg~~-----~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~ 226 (710)
T 2xdw_A 152 TIKFMKVDGAKE-----LPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCA 226 (710)
T ss_dssp EEEEEETTTTEE-----EEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEE
T ss_pred EEEEEECCCCCC-----CcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEe
Confidence 899999987663 322222223678999999999999887765 999999876543 2222
Q ss_pred ecCCCCceEeEEEEEEcCCCcEEEEEcc-----CCeEEEecCCC------cc-ceeEEeCCCcCCcceEEEecCCCccEE
Q 038702 72 HNNQTGRWISSFRAIWGWDDSCIFIGNM-----TRTVEVISPAQ------RR-SVATLQSPYISAIPCRFHAHPHQVGTL 139 (154)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----d~~i~i~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l 139 (154)
....+.. ....+.|+|+|++|+..+. +..|++||+.+ ++ ....+..+..... ..++| ++..|
T Consensus 227 ~~~~~~~--~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~---~~~s~-dg~~l 300 (710)
T 2xdw_A 227 EFPDEPK--WMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEY---DYVTN-EGTVF 300 (710)
T ss_dssp CCTTCTT--CEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCE---EEEEE-ETTEE
T ss_pred ccCCCCe--EEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEE---EEEec-cCCEE
Confidence 2111121 2346689999999888765 56899999986 43 3555654443332 24666 45554
Q ss_pred EEEc-C---CCeEEEeeCC
Q 038702 140 AGAT-G---GGQVYVWTSD 154 (154)
Q Consensus 140 ~~~~-~---d~~i~~wd~~ 154 (154)
+..+ . .+.|.+||++
T Consensus 301 ~~~s~~~~~~~~l~~~d~~ 319 (710)
T 2xdw_A 301 TFKTNRHSPNYRLINIDFT 319 (710)
T ss_dssp EEEECTTCTTCEEEEEETT
T ss_pred EEEECCCCCCCEEEEEeCC
Confidence 4443 3 3368888863
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-09 Score=69.34 Aligned_cols=140 Identities=12% Similarity=0.044 Sum_probs=92.3
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEe
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWIS 81 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (154)
+++..++.|..|+...+ . ..+..+...+.+++++|+|+++++...++.|.+||..+++.......... .....
T Consensus 44 ~~~~~~~~i~~~~~~~~-~-----~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~-~~~~~ 116 (296)
T 3e5z_A 44 FSDVRQNRTWAWSDDGQ-L-----SPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEG-KKLNS 116 (296)
T ss_dssp EEEGGGTEEEEEETTSC-E-----EEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETT-EECCC
T ss_pred EEeCCCCEEEEEECCCC-e-----EEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCC-CCCCC
Confidence 45677888999998654 1 23335667899999999999888877788999999977654433221110 00001
Q ss_pred EEEEEEcCCCcEEEE----Ecc-------------CCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcC
Q 038702 82 SFRAIWGWDDSCIFI----GNM-------------TRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATG 144 (154)
Q Consensus 82 ~~~~~~~~~~~~l~~----~~~-------------d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 144 (154)
...++++|+|+++++ +.. .+.|..++.. ++ +..+..+. ..+..++++| +++.+++.+.
T Consensus 117 ~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~--~~~~gi~~s~-dg~~lv~~~~ 191 (296)
T 3e5z_A 117 PNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDR--VKPNGLAFLP-SGNLLVSDTG 191 (296)
T ss_dssp CCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCC--SSEEEEEECT-TSCEEEEETT
T ss_pred CCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCC--CCCccEEECC-CCCEEEEeCC
Confidence 124678999998887 331 3456666655 43 33333222 2336789999 7777788888
Q ss_pred CCeEEEeeC
Q 038702 145 GGQVYVWTS 153 (154)
Q Consensus 145 d~~i~~wd~ 153 (154)
++.|.+||+
T Consensus 192 ~~~i~~~~~ 200 (296)
T 3e5z_A 192 DNATHRYCL 200 (296)
T ss_dssp TTEEEEEEE
T ss_pred CCeEEEEEE
Confidence 899999986
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.2e-10 Score=81.85 Aligned_cols=117 Identities=9% Similarity=-0.058 Sum_probs=78.6
Q ss_pred ccCCeEEEEEcCCCCEEE-----EeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCe---
Q 038702 31 HKRAVHSAYFSPSGSSLA-----TTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRT--- 102 (154)
Q Consensus 31 ~~~~v~~~~~~~~~~~l~-----~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~--- 102 (154)
|...+..++|||+|++|+ .|+.+..|++||+.+++..... +.... ....++|+|||+.|+.++.|..
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~~----~~~~~~wspDg~~l~~~~~d~~~~~ 193 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-VIEGG----KYATPKWTPDSKGFYYEWLPTDPSI 193 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-CBSCC----TTCCCEECTTSSEEEEEECCCCTTS
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-ccCcc----cccceEEecCCCEEEEEEecCCCCC
Confidence 444789999999999998 4455678999999987754111 11110 0024679999999999887765
Q ss_pred ----------EEEecCCCccce--eEEeCCCcCCcceEEEecCCCccEEEEEcCCC----eEEEeeC
Q 038702 103 ----------VEVISPAQRRSV--ATLQSPYISAIPCRFHAHPHQVGTLAGATGGG----QVYVWTS 153 (154)
Q Consensus 103 ----------i~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~----~i~~wd~ 153 (154)
|++|++.+++.. ..+...........+.|+| ++++|+..+.++ .|++||.
T Consensus 194 ~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~ 259 (695)
T 2bkl_A 194 KVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR-DGKYLFVYILRGWSENDVYWKRP 259 (695)
T ss_dssp CGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT-TSCCEEEEEEETTTEEEEEEECT
T ss_pred ccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC-CCCEEEEEEeCCCCceEEEEEcC
Confidence 999999887632 2233222222335788999 778777766555 6666653
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.21 E-value=1.4e-09 Score=67.79 Aligned_cols=139 Identities=9% Similarity=0.009 Sum_probs=90.5
Q ss_pred ecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEE
Q 038702 4 SSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSF 83 (154)
Q Consensus 4 ~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (154)
...++.|.+|+..+... ..........+..++++++++.+++...++.|.+|+............ .. ....
T Consensus 125 ~~~~~~i~~~~~~~~~~----~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~--~~---~~p~ 195 (270)
T 1rwi_B 125 DRGNNRVVKLAAGSKTQ----TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFT--DI---TAPW 195 (270)
T ss_dssp EGGGTEEEEECTTCCSC----EECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCS--SC---CSEE
T ss_pred ECCCCEEEEEECCCcee----EeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeeccc--CC---CCce
Confidence 34456777775433221 111112334678899999999777777788999999876543221111 10 1234
Q ss_pred EEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 84 RAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 84 ~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.+++++++.++++...++.|.+|+........ ... .....+..++++| +++++++...++.|++++++
T Consensus 196 ~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~-~~~~~p~~i~~~~-~g~l~v~~~~~~~v~~~~~~ 263 (270)
T 1rwi_B 196 GIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPF-TGLNTPLAVAVDS-DRTVYVADRGNDRVVKLTSL 263 (270)
T ss_dssp EEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCC-CSCSCEEEEEECT-TCCEEEEEGGGTEEEEECCC
T ss_pred EEEECCCCCEEEEECCCCcEEEEcCCCCccee-ecc-CCCCCceeEEECC-CCCEEEEECCCCEEEEEcCC
Confidence 56889999888877778899999987654322 221 1112346788998 67888999999999999874
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.2e-09 Score=75.55 Aligned_cols=141 Identities=11% Similarity=0.073 Sum_probs=87.7
Q ss_pred eecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCe-------------EEEEeccccccc-e
Q 038702 3 TSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDT-------------IGIWSGVNFENT-A 68 (154)
Q Consensus 3 ~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-------------v~~~~~~~~~~~-~ 68 (154)
.|+.+.+|++||+.+++... ....... ....++|+|+|+.|+.++.|.. |++|++.+.... .
T Consensus 142 ~G~~~~~i~v~dl~tg~~~~---~~~~~~~-~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~ 217 (695)
T 2bkl_A 142 NAADEAVLHVIDVDSGEWSK---VDVIEGG-KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDT 217 (695)
T ss_dssp TTCSCCEEEEEETTTCCBCS---SCCBSCC-TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCE
T ss_pred CCCceEEEEEEECCCCCCcC---CcccCcc-cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhce
Confidence 35566789999998876310 1111111 1267899999999999988776 999999887643 2
Q ss_pred eEeecCCCCceEeEEEEEEcCCCcEEEEEccCC----eEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEc-
Q 038702 69 MIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTR----TVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT- 143 (154)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 143 (154)
.......... ....+.|+|+|++|+..+.++ .|++++..+++. ..+..+.... ....+ + ++.+++...
T Consensus 218 lv~~~~~~~~--~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~--~~~~~-~-~g~l~~~s~~ 290 (695)
T 2bkl_A 218 VVHERTGDPT--TFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGAK--YEVHA-W-KDRFYVLTDE 290 (695)
T ss_dssp EEECCCCCTT--CEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSSCC--EEEEE-E-TTEEEEEECT
T ss_pred EEEecCCCCE--EEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCCce--EEEEe-c-CCcEEEEECC
Confidence 2222111111 234668999999998887666 678887665543 3444333333 23445 4 344555554
Q ss_pred --CCCeEEEeeCC
Q 038702 144 --GGGQVYVWTSD 154 (154)
Q Consensus 144 --~d~~i~~wd~~ 154 (154)
.++.|.+||++
T Consensus 291 ~~~~~~l~~~d~~ 303 (695)
T 2bkl_A 291 GAPRQRVFEVDPA 303 (695)
T ss_dssp TCTTCEEEEEBTT
T ss_pred CCCCCEEEEEeCC
Confidence 35889999873
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.16 E-value=4.8e-09 Score=66.07 Aligned_cols=139 Identities=10% Similarity=-0.066 Sum_probs=92.3
Q ss_pred cCCCcEEEEEccCCCCCCCCCceeecc-cCCeEEEEEcCCCCEEEEeeC-CCeEEEEeccccccceeEeecCC-CCceEe
Q 038702 5 STDGTACIWDLRSMATDKPEPTKVLSH-KRAVHSAYFSPSGSSLATTSF-DDTIGIWSGVNFENTAMIHHNNQ-TGRWIS 81 (154)
Q Consensus 5 ~~d~~v~vw~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-d~~v~~~~~~~~~~~~~~~~~~~-~~~~~~ 81 (154)
+.++.|..||. +++. .-++..+ ...+.++.+.++|+.+++.+. ++.+..+|. +++....+..... ......
T Consensus 53 s~~~~V~~~d~-~G~~----~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~ 126 (276)
T 3no2_A 53 SYSKGAKMITR-DGRE----LWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQ 126 (276)
T ss_dssp ECBSEEEEECT-TSCE----EEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGS
T ss_pred eCCCCEEEECC-CCCE----EEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCccccc
Confidence 34566777887 4442 2233322 346889999999999999887 778888876 3433322221111 000000
Q ss_pred EEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 82 SFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
...+...+++.++++...++.|..||.. ++.+.++..+. .. ......+ ++++++++..+++|..+|.+
T Consensus 127 ~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~-~~--~~~~~~~-~g~~~v~~~~~~~v~~~d~~ 194 (276)
T 3no2_A 127 FRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSG-TP--FSSAFLD-NGDCLVACGDAHCFVQLNLE 194 (276)
T ss_dssp CSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSS-CC--CEEEECT-TSCEEEECBTTSEEEEECTT
T ss_pred ccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCC-Cc--cceeEcC-CCCEEEEeCCCCeEEEEeCc
Confidence 1123467899999999999999999998 99888887542 22 3456667 77889888888899988864
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.16 E-value=4.4e-09 Score=65.54 Aligned_cols=137 Identities=7% Similarity=-0.047 Sum_probs=86.3
Q ss_pred cCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEE
Q 038702 5 STDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFR 84 (154)
Q Consensus 5 ~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
..++.|.+|+...... ......+...+.+++++++++.+++.. ++.|..||............. ......
T Consensus 43 ~~~~~i~~~~~~~~~~----~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~-----~~~p~~ 112 (270)
T 1rwi_B 43 GMYGRVVKLATGSTGT----TVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDG-----LNYPEG 112 (270)
T ss_dssp SSSCEEEEECC---------EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCS-----CSSEEE
T ss_pred CCCCcEEEecCCCccc----ceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCC-----cCCCcc
Confidence 5667888887654331 111113335678899999998666665 889999998765432211111 012346
Q ss_pred EEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 85 AIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 85 ~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
++++++++++++...++.|.+|+..+........ .....+..++++| +++++++...++.|.+||.+
T Consensus 113 i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~--~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~ 179 (270)
T 1rwi_B 113 LAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF--TGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAE 179 (270)
T ss_dssp EEECTTCCEEEEEGGGTEEEEECTTCCSCEECCC--CSCCSCCCEEECT-TCCEEEEEGGGTEEEEECTT
T ss_pred eEECCCCCEEEEECCCCEEEEEECCCceeEeecc--ccCCCceeEEEeC-CCCEEEEECCCCEEEEEecC
Confidence 6789999988887788899999866544322211 1112235688888 67788887788899999863
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.3e-09 Score=67.17 Aligned_cols=134 Identities=10% Similarity=-0.096 Sum_probs=82.4
Q ss_pred ecCCCcEEEEEccCCCCCCCCCceeec-----ccCCeEEEEEcCCCCEEEE----eeC-------------CCeEEEEec
Q 038702 4 SSTDGTACIWDLRSMATDKPEPTKVLS-----HKRAVHSAYFSPSGSSLAT----TSF-------------DDTIGIWSG 61 (154)
Q Consensus 4 ~~~d~~v~vw~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~----~~~-------------d~~v~~~~~ 61 (154)
...++.|.+||..+++ ...+.. ....+..++++|+|+++++ ++. .+.|..++.
T Consensus 86 ~~~~~~i~~~d~~~g~-----~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~ 160 (296)
T 3e5z_A 86 SHGLRRLERQREPGGE-----WESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP 160 (296)
T ss_dssp ETTTTEEEEECSTTCC-----EEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECT
T ss_pred ecCCCeEEEEcCCCCc-----EEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECC
Confidence 3445778899886654 222221 1235678999999998887 331 235555555
Q ss_pred cccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCC-Cccc---eeEEeCCCcCCcceEEEecCCCcc
Q 038702 62 VNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPA-QRRS---VATLQSPYISAIPCRFHAHPHQVG 137 (154)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 137 (154)
. ++......... ....++|+|+++.+++.+.++.|++|++. +++. ...+ .. ....+..+++++ +++
T Consensus 161 ~-g~~~~~~~~~~------~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~-~~~~p~~i~~d~-~G~ 230 (296)
T 3e5z_A 161 D-GTLSAPIRDRV------KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TV-EPGKTDGLRVDA-GGL 230 (296)
T ss_dssp T-SCEEEEECCCS------SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CC-SSSCCCSEEEBT-TSC
T ss_pred C-CCEEEeecCCC------CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eC-CCCCCCeEEECC-CCC
Confidence 4 22222211111 12356899999988777888999999987 4443 2333 21 222235688888 777
Q ss_pred EEEEEcCCCeEEEeeCC
Q 038702 138 TLAGATGGGQVYVWTSD 154 (154)
Q Consensus 138 ~l~~~~~d~~i~~wd~~ 154 (154)
++++. ++.|.+||.+
T Consensus 231 l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 231 IWASA--GDGVHVLTPD 245 (296)
T ss_dssp EEEEE--TTEEEEECTT
T ss_pred EEEEc--CCeEEEECCC
Confidence 76666 7899999864
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.08 E-value=5.2e-08 Score=61.91 Aligned_cols=123 Identities=11% Similarity=0.071 Sum_probs=81.3
Q ss_pred eecccCCeEEEEEc----CCCCEEEEe-eCCCeEEEEeccc-cccc--eeEeecCCCCceEeEEEEEEcCCCcEEEEEcc
Q 038702 28 VLSHKRAVHSAYFS----PSGSSLATT-SFDDTIGIWSGVN-FENT--AMIHHNNQTGRWISSFRAIWGWDDSCIFIGNM 99 (154)
Q Consensus 28 ~~~~~~~v~~~~~~----~~~~~l~~~-~~d~~v~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 99 (154)
...+......++++ |+++.++.+ ..++.|.+|+... +... .......... ......++++++|.++++...
T Consensus 167 ~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~-~~~p~~i~~d~~G~l~v~~~~ 245 (314)
T 1pjx_A 167 VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH-EGGADGMDFDEDNNLLVANWG 245 (314)
T ss_dssp EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS-SCEEEEEEEBTTCCEEEEEET
T ss_pred eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCC-CCCCCceEECCCCCEEEEEcC
Confidence 33445567889999 999765544 5688999999862 2211 1111111110 012335688999998888777
Q ss_pred CCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCcc-EEEEEcCCCeEEEeeCC
Q 038702 100 TRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVG-TLAGATGGGQVYVWTSD 154 (154)
Q Consensus 100 d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~~wd~~ 154 (154)
++.|.+||..+++.+..+..+.. .+..++++| +++ ++++...++.|..|+++
T Consensus 246 ~~~i~~~d~~~g~~~~~~~~~~~--~~~~i~~~~-dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 246 SSHIEVFGPDGGQPKMRIRCPFE--KPSNLHFKP-QTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp TTEEEEECTTCBSCSEEEECSSS--CEEEEEECT-TSSEEEEEETTTTEEEEEECS
T ss_pred CCEEEEEcCCCCcEeEEEeCCCC--CceeEEECC-CCCEEEEEeCCCCeEEEEeCC
Confidence 88999999987877776664432 336788888 666 56666677899998863
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.5e-08 Score=66.33 Aligned_cols=129 Identities=14% Similarity=0.083 Sum_probs=79.8
Q ss_pred CcEEEEEccCCCCCCCCCceeecc--cCCeEEEEEcCCCCEEEEeeCC-----CeEEEEeccccccceeEeecCCCCceE
Q 038702 8 GTACIWDLRSMATDKPEPTKVLSH--KRAVHSAYFSPSGSSLATTSFD-----DTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d-----~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
..|.+|++.... ...+..+ ...+..+.|+|+|+.|+.++.+ +.|.+||+.+++........ + .
T Consensus 216 ~~l~~~d~~~~~-----~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~---~--~ 285 (396)
T 3c5m_A 216 ARMWLVNEDGSN-----VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP---P--C 285 (396)
T ss_dssp CCCEEEETTSCC-----CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC---S--E
T ss_pred ceEEEEECCCCc-----eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC---C--C
Confidence 457778876543 2222232 2357889999999987776554 45999999876544332211 1 1
Q ss_pred eEEEEEEcC-CCcEEEEEc----------------cCCeEEEecCCCccceeEEeCCCcCC---------cceEEEecCC
Q 038702 81 SSFRAIWGW-DDSCIFIGN----------------MTRTVEVISPAQRRSVATLQSPYISA---------IPCRFHAHPH 134 (154)
Q Consensus 81 ~~~~~~~~~-~~~~l~~~~----------------~d~~i~i~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 134 (154)
. ..|+| +++++++++ .+..|++||+.+++.. .+..+.... ....++|+|
T Consensus 286 ~---~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~- 360 (396)
T 3c5m_A 286 S---HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTP- 360 (396)
T ss_dssp E---EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECT-
T ss_pred C---CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEcc-
Confidence 1 57899 999887754 2468999999887653 343332211 124568899
Q ss_pred CccEEEEEc-CCCeEEEe
Q 038702 135 QVGTLAGAT-GGGQVYVW 151 (154)
Q Consensus 135 ~~~~l~~~~-~d~~i~~w 151 (154)
+++.|+..+ .++...+|
T Consensus 361 dg~~l~~~s~~~~~~~l~ 378 (396)
T 3c5m_A 361 NDDGVLFTSDFEGVPAIY 378 (396)
T ss_dssp TSSEEEEEECTTSSCEEE
T ss_pred CCCeEEEEecCCCCceEE
Confidence 677766555 45554444
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.04 E-value=7.2e-08 Score=64.01 Aligned_cols=143 Identities=8% Similarity=0.010 Sum_probs=88.4
Q ss_pred eecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCC--eEEEEeccccccceeEeecCC-CCce
Q 038702 3 TSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDD--TIGIWSGVNFENTAMIHHNNQ-TGRW 79 (154)
Q Consensus 3 ~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~v~~~~~~~~~~~~~~~~~~~-~~~~ 79 (154)
+...++.|++||...+. ...+........ ++|+|+++.|+.+..++ .|.+++............... ...
T Consensus 147 ~d~~~~~I~~id~~~g~-----~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~- 219 (409)
T 3hrp_A 147 YQRDDPRVRLISVDDNK-----VTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSG- 219 (409)
T ss_dssp EETTTTEEEEEETTTTE-----EEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCS-
T ss_pred EecCCCcEEEEECCCCE-----EEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcC-
Confidence 44456788888887654 233332233334 99999999988888766 788888776554333311111 111
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeE----EeCCCcCCcce-EEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVAT----LQSPYISAIPC-RFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
....++++|++..|+.+..++.|+.||..++..... ..+. ....+. .++++|.++.++++-..++.|+.|+.+
T Consensus 220 -~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~-~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~ 297 (409)
T 3hrp_A 220 -KIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGS-LGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPD 297 (409)
T ss_dssp -CCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSC-CCCSSCCEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred -CcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCC-CCCCccccEEEeCCCCEEEEEeCCCCEEEEEecC
Confidence 112457889544455567788999999987653222 1111 111113 789999657778888888999999864
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.04 E-value=5.6e-09 Score=74.06 Aligned_cols=115 Identities=12% Similarity=0.010 Sum_probs=75.8
Q ss_pred ccCCeEEEEEcCCCCEEEEeeCC-----CeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCe---
Q 038702 31 HKRAVHSAYFSPSGSSLATTSFD-----DTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRT--- 102 (154)
Q Consensus 31 ~~~~v~~~~~~~~~~~l~~~~~d-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~--- 102 (154)
|...+..++|||+|++|+.++.+ ..|++||+.+++........ .....++|+|| +.|+.+..++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~------~~~~~~~wspD-~~l~~~~~~~~~~~ 233 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKW------VKFSGLAWLGN-DALLYSRFAEPKEG 233 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEE------EESCCCEESTT-SEEEEEECCCC---
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCC------ceeccEEEECC-CEEEEEEecCcccc
Confidence 33468899999999998877653 46999999988764321111 11124679999 98888776543
Q ss_pred -----------EEEecCCCccce--eEEeCCCcCCcceEEEecCCCccEEEEEcCC-----CeEEEeeC
Q 038702 103 -----------VEVISPAQRRSV--ATLQSPYISAIPCRFHAHPHQVGTLAGATGG-----GQVYVWTS 153 (154)
Q Consensus 103 -----------i~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----~~i~~wd~ 153 (154)
|++|++.+++.. ..+...........+.|+| ++++|+..+.+ ..|++||+
T Consensus 234 ~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~ 301 (741)
T 1yr2_A 234 QAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARV 301 (741)
T ss_dssp -----CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEE
T ss_pred cccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEEC
Confidence 889998876532 2233222222236788999 78877766644 38999886
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.03 E-value=1e-08 Score=67.26 Aligned_cols=133 Identities=14% Similarity=0.075 Sum_probs=87.0
Q ss_pred CCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEee----------CCCeEEEEeccccccceeEeecC-C
Q 038702 7 DGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTS----------FDDTIGIWSGVNFENTAMIHHNN-Q 75 (154)
Q Consensus 7 d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~v~~~~~~~~~~~~~~~~~~-~ 75 (154)
++.|.+.|..+.+. ...+..-..+ . +.++|+|++++.++ .++.|.+||..+.+....+.... .
T Consensus 58 ~~~V~ViD~~t~~v----~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~ 131 (386)
T 3sjl_D 58 VTQQFVIDGEAGRV----IGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAP 131 (386)
T ss_dssp SEEEEEEETTTTEE----EEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC
T ss_pred CCEEEEEECCCCeE----EEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcc
Confidence 57899999987763 2223222333 4 99999999888775 36789999999987765554321 0
Q ss_pred ---CCceEeEEEEEEcCCCcEEEEEcc--CCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEE
Q 038702 76 ---TGRWISSFRAIWGWDDSCIFIGNM--TRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYV 150 (154)
Q Consensus 76 ---~~~~~~~~~~~~~~~~~~l~~~~~--d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~ 150 (154)
.+. ....+.++|+|++++.+.. ++.|.++|+.+++.+.++..... .. ..|.....+++.+.||++.+
T Consensus 132 r~~~g~--~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~-----~~-~~P~g~~~~~~~~~DG~~~~ 203 (386)
T 3sjl_D 132 RFLVGT--YPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC-----YH-IFPTAPDTFFMHCRDGSLAK 203 (386)
T ss_dssp CCCBSC--CGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-----EE-EEEEETTEEEEEETTSCEEE
T ss_pred ccccCC--CCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc-----ce-eecCCCceeEEECCCCCEEE
Confidence 000 1113578999999888764 68999999999999988864321 11 12223345556666666666
Q ss_pred eeC
Q 038702 151 WTS 153 (154)
Q Consensus 151 wd~ 153 (154)
.++
T Consensus 204 v~~ 206 (386)
T 3sjl_D 204 VAF 206 (386)
T ss_dssp EEC
T ss_pred EEC
Confidence 554
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.5e-11 Score=80.52 Aligned_cols=136 Identities=13% Similarity=0.098 Sum_probs=68.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
+++++.|+.|+.||..+++. .-.... +.+.+..+..++..+++++.|+.+..||.++++.......... ..+
T Consensus 12 v~~gs~dg~v~a~d~~tG~~----~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~--~~~ 83 (369)
T 2hz6_A 12 LFVSTLDGSLHAVSKRTGSI----KWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIP--ELV 83 (369)
T ss_dssp EEEEETTSEEEEEETTTCCE----EEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHH--HHH
T ss_pred EEEEcCCCEEEEEECCCCCE----EEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCc--ccc
Confidence 46788999999999988764 222222 4555555566787888888999999999988766433221100 000
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.. ..... .+..+++++.++.++.||.++++.+..+..+. ....+| ++..+++++.|+.|+.||.
T Consensus 84 ~~-sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~------~~~~~p-~~~~v~~~~~dg~v~a~d~ 147 (369)
T 2hz6_A 84 QA-SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF------ADSLSP-STSLLYLGRTEYTITMYDT 147 (369)
T ss_dssp TT-CSCC------CCCCEEEEEEEEECCC-----------------------------EEEEEEEEEEECCCS
T ss_pred cc-CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC------cccccc-cCCEEEEEecCCEEEEEEC
Confidence 00 00011 34567788889999999999999887765432 123445 5678888899999999986
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.00 E-value=7e-08 Score=63.31 Aligned_cols=130 Identities=18% Similarity=0.143 Sum_probs=83.9
Q ss_pred cEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEee----------CCCeEEEEeccccccceeEeec-CC--
Q 038702 9 TACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTS----------FDDTIGIWSGVNFENTAMIHHN-NQ-- 75 (154)
Q Consensus 9 ~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~v~~~~~~~~~~~~~~~~~-~~-- 75 (154)
.|.++|..+++. .....-...- .+.++|++++++.+. .++.|.++|..+.+........ ..
T Consensus 48 ~v~v~D~~t~~~-----~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~ 121 (373)
T 2mad_H 48 QQWVLDAGSGSI-----LGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRF 121 (373)
T ss_pred EEEEEECCCCeE-----EEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcccc
Confidence 789999887653 3233222222 999999999998886 3678999999877665444321 00
Q ss_pred -CCceEeEEEEEEcCCCcEEEEEcc--CCeEEEecCCCccceeE-EeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEe
Q 038702 76 -TGRWISSFRAIWGWDDSCIFIGNM--TRTVEVISPAQRRSVAT-LQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 151 (154)
Q Consensus 76 -~~~~~~~~~~~~~~~~~~l~~~~~--d~~i~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w 151 (154)
.+. ....+.++|+|++|+.++. ++.|.++| .+++.+.. +.... . +.+.|.....+++.+.||++.++
T Consensus 122 ~~g~--~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~--~----~~~~~~~~~~~~~~~~dg~~~~v 192 (373)
T 2mad_H 122 DVGP--YSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT--C----YHIHPGAPSTFYLLCAQGGLAKT 192 (373)
T ss_pred ccCC--CccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc--e----EEEEeCCCceEEEEcCCCCEEEE
Confidence 000 1125679999999998874 47899999 99988777 54321 1 22333233455666677777666
Q ss_pred eC
Q 038702 152 TS 153 (154)
Q Consensus 152 d~ 153 (154)
|.
T Consensus 193 d~ 194 (373)
T 2mad_H 193 DH 194 (373)
T ss_pred EC
Confidence 53
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=4.6e-07 Score=57.01 Aligned_cols=136 Identities=12% Similarity=0.038 Sum_probs=88.2
Q ss_pred ecCCCcEEEEEccCCCCCCCCCceee--cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEe
Q 038702 4 SSTDGTACIWDLRSMATDKPEPTKVL--SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWIS 81 (154)
Q Consensus 4 ~~~d~~v~vw~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (154)
...++.|.+||. ++. ..... .+...+..++++++++.+++...++.|..+|. +.+.... ..... .. .
T Consensus 116 ~~~~~~i~~~d~-~g~-----~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~-~~~~~-~~--~ 184 (299)
T 2z2n_A 116 EMNGNRIGRITD-DGK-----IREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEF-KIPTP-AS--G 184 (299)
T ss_dssp ETTTTEEEEECT-TCC-----EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEE-ECSST-TC--C
T ss_pred ecCCceEEEECC-CCC-----EEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEe-eCCCC-CC--c
Confidence 344567777776 332 22221 34457899999999988887777889999998 4433222 11111 11 2
Q ss_pred EEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 82 SFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
...+++++++.++++...++.|..|+. +++.. .+........+..+++++ ++.++++...++.|..||.
T Consensus 185 ~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 185 PVGITKGNDDALWFVEIIGNKIGRITT-SGEIT-EFKIPTPNARPHAITAGA-GIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp EEEEEECTTSSEEEEETTTTEEEEECT-TCCEE-EEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEEET
T ss_pred ceeEEECCCCCEEEEccCCceEEEECC-CCcEE-EEECCCCCCCceeEEECC-CCCEEEeccCCceEEEECC
Confidence 335678999998777777889999999 66533 332222223346788888 6777777667889998885
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.2e-08 Score=64.55 Aligned_cols=123 Identities=12% Similarity=0.154 Sum_probs=72.8
Q ss_pred cEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCC---------------------------CeEEEEec
Q 038702 9 TACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFD---------------------------DTIGIWSG 61 (154)
Q Consensus 9 ~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------------------------~~v~~~~~ 61 (154)
.|.+|++..++ ...+..+.. +..+.|+|+|+.|+.++.+ ..|.+||+
T Consensus 86 ~l~~~~~~~g~-----~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~ 159 (347)
T 2gop_A 86 EIWVADLETLS-----SKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDT 159 (347)
T ss_dssp EEEEEETTTTE-----EEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEET
T ss_pred eEEEEECCCCc-----eEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEEC
Confidence 36777776544 344444444 9999999999988887642 56888999
Q ss_pred cccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCC-------eEEEecCCCccceeEEeCCCcCCcceEEEecCC
Q 038702 62 VNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTR-------TVEVISPAQRRSVATLQSPYISAIPCRFHAHPH 134 (154)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-------~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (154)
.+++....+... . ...+.|+|++ +++++..++ ...+|.+.+++ ...+..+ ... . .++|
T Consensus 160 ~~~~~~~~l~~~-~------~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~--~~~-~--~~sp- 224 (347)
T 2gop_A 160 ESEEVIEEFEKP-R------FSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK--VSF-Y--AVDS- 224 (347)
T ss_dssp TTTEEEEEEEEE-T------TCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE--ESE-E--EEEE-
T ss_pred CCCeEEeeecCC-C------cccccCCCCe-EEEEEecccccccccccccEEEeCCCc-eEEeccC--cce-e--eECC-
Confidence 877652222221 1 1256799999 777775432 33444333444 3334322 111 2 3377
Q ss_pred CccEEEEEcCC--------CeEEEee
Q 038702 135 QVGTLAGATGG--------GQVYVWT 152 (154)
Q Consensus 135 ~~~~l~~~~~d--------~~i~~wd 152 (154)
+++.|+..+.+ ..|.+||
T Consensus 225 dg~~l~~~~~~~~~~~~~~~~l~~~d 250 (347)
T 2gop_A 225 DGERILLYGKPEKKYMSEHNKLYIYD 250 (347)
T ss_dssp CSSCEEEEECCSSSCCCSSCEEEEEC
T ss_pred CCCEEEEEEccccCCccccceEEEEC
Confidence 77777666543 3677775
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.96 E-value=1e-07 Score=60.70 Aligned_cols=139 Identities=11% Similarity=-0.002 Sum_probs=85.4
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEe
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWIS 81 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (154)
+++..++.|..|+. +++ ...+..+...+..+.++++|+++++...++.|..|+.. ++.......... .....
T Consensus 61 ~~d~~~~~i~~~~~-~g~-----~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~-~~~~~ 132 (305)
T 3dr2_A 61 WSDLVGRRVLGWRE-DGT-----VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAG-KRLNS 132 (305)
T ss_dssp EEETTTTEEEEEET-TSC-----EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETT-EECSC
T ss_pred EEECCCCEEEEEeC-CCC-----EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCC-CccCC
Confidence 45566778888876 322 23333566778999999999977766667889999975 332222211110 00001
Q ss_pred EEEEEEcCCCcEEEE----Ecc-------------CCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcC
Q 038702 82 SFRAIWGWDDSCIFI----GNM-------------TRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATG 144 (154)
Q Consensus 82 ~~~~~~~~~~~~l~~----~~~-------------d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 144 (154)
.-.+++.++|+++++ |.. .+.|..+|..+++..... . ......++|+| ++..|..+..
T Consensus 133 ~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~--~~~p~gl~~sp-dg~~lyv~~~ 207 (305)
T 3dr2_A 133 PNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--D--LDHPNGLAFSP-DEQTLYVSQT 207 (305)
T ss_dssp CCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--E--ESSEEEEEECT-TSSEEEEEEC
T ss_pred CCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--c--CCCCcceEEcC-CCCEEEEEec
Confidence 114578999998886 332 256788887766644332 1 12335789999 6776655554
Q ss_pred C------CeEEEeeC
Q 038702 145 G------GQVYVWTS 153 (154)
Q Consensus 145 d------~~i~~wd~ 153 (154)
. +.|.+||+
T Consensus 208 ~~~~~~~~~i~~~~~ 222 (305)
T 3dr2_A 208 PEQGHGSVEITAFAW 222 (305)
T ss_dssp CC---CCCEEEEEEE
T ss_pred CCcCCCCCEEEEEEe
Confidence 4 78988875
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.95 E-value=6e-07 Score=56.94 Aligned_cols=137 Identities=9% Similarity=-0.032 Sum_probs=82.7
Q ss_pred eecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeE
Q 038702 3 TSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISS 82 (154)
Q Consensus 3 ~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (154)
+...++.|+.||..++. .........+.+++++++++++++ . +..|.+||..+.+......... .......
T Consensus 30 ~d~~~~~i~~~d~~~~~------~~~~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~-~~~~~~~ 100 (297)
T 3g4e_A 30 VDIPAKKVCRWDSFTKQ------VQRVTMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDN-DKKNNRF 100 (297)
T ss_dssp EETTTTEEEEEETTTCC------EEEEECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCT-TCSSEEE
T ss_pred EECCCCEEEEEECCCCc------EEEEeCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCC-CCCCCCC
Confidence 34456778888876543 233455678999999999995554 3 5679999988765443332211 1112233
Q ss_pred EEEEEcCCCcEEEEEcc-----------CCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCcc-EEEEEcCCCeEEE
Q 038702 83 FRAIWGWDDSCIFIGNM-----------TRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVG-TLAGATGGGQVYV 150 (154)
Q Consensus 83 ~~~~~~~~~~~l~~~~~-----------d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~~ 150 (154)
..++++|+|+++++... .+.|..++.. ++.. .+.. ....+..++|+| +++ ++++.+.++.|.+
T Consensus 101 ~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~-~~~~--~~~~pngi~~sp-dg~~lyv~~~~~~~i~~ 175 (297)
T 3g4e_A 101 NDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVK-KYFD--QVDISNGLDWSL-DHKIFYYIDSLSYSVDA 175 (297)
T ss_dssp EEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEE-EEEE--EESBEEEEEECT-TSCEEEEEEGGGTEEEE
T ss_pred CCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEE-EEee--ccccccceEEcC-CCCEEEEecCCCCcEEE
Confidence 46788999997765432 1234444432 3322 2221 112346789999 555 4566777889999
Q ss_pred eeC
Q 038702 151 WTS 153 (154)
Q Consensus 151 wd~ 153 (154)
||+
T Consensus 176 ~~~ 178 (297)
T 3g4e_A 176 FDY 178 (297)
T ss_dssp EEE
T ss_pred Eec
Confidence 975
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=98.95 E-value=4.6e-08 Score=69.41 Aligned_cols=135 Identities=10% Similarity=-0.017 Sum_probs=82.6
Q ss_pred CcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCe--------------EEEEeccccccc-eeEee
Q 038702 8 GTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDT--------------IGIWSGVNFENT-AMIHH 72 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--------------v~~~~~~~~~~~-~~~~~ 72 (154)
.+|++||+.+++. .....+...+..++|+|+ +.|+.++.++. |.+|++.+.... .....
T Consensus 189 ~~i~v~dl~tg~~-----~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~ 262 (741)
T 1yr2_A 189 RTVKFVGVADGKP-----LADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFA 262 (741)
T ss_dssp EEEEEEETTTCCE-----EEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEEC
T ss_pred EEEEEEECCCCCC-----CCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEec
Confidence 4699999987653 222222222357899999 98888876554 889998776532 22222
Q ss_pred cCCCCceEeEEEEEEcCCCcEEEEEccCC-----eEEEecCCCc--cceeEEeCCCcCCcceEEEecCCCccEEEEEcC-
Q 038702 73 NNQTGRWISSFRAIWGWDDSCIFIGNMTR-----TVEVISPAQR--RSVATLQSPYISAIPCRFHAHPHQVGTLAGATG- 144 (154)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-----~i~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 144 (154)
....... ...+.|+|+|++|+..+.++ .|++||+.++ +....+..+..... .. +.| +++.|+..+.
T Consensus 263 ~~~~~~~--~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~-~~~-dg~~l~~~s~~ 336 (741)
T 1yr2_A 263 TPELPKR--GHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQW--DF-VDG-VGDQLWFVSGD 336 (741)
T ss_dssp CTTCTTC--EEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCE--EE-EEE-ETTEEEEEECT
T ss_pred cCCCCeE--EEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceE--EE-Eec-cCCEEEEEECC
Confidence 1111111 34668999999888877544 8999999876 41455554433332 22 235 5566655553
Q ss_pred ---CCeEEEeeCC
Q 038702 145 ---GGQVYVWTSD 154 (154)
Q Consensus 145 ---d~~i~~wd~~ 154 (154)
++.|.+||++
T Consensus 337 ~~~~~~l~~~d~~ 349 (741)
T 1yr2_A 337 GAPLKKIVRVDLS 349 (741)
T ss_dssp TCTTCEEEEEECS
T ss_pred CCCCCEEEEEeCC
Confidence 4568888863
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=3.5e-07 Score=63.14 Aligned_cols=146 Identities=10% Similarity=-0.016 Sum_probs=92.7
Q ss_pred eeecCCCcEEEEEcc--CCCCCCCCCceeecccCCeEEEEEc----CCCCEEEEeeC-CCeEEEEeccccccceeEeecC
Q 038702 2 ATSSTDGTACIWDLR--SMATDKPEPTKVLSHKRAVHSAYFS----PSGSSLATTSF-DDTIGIWSGVNFENTAMIHHNN 74 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~--~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~-d~~v~~~~~~~~~~~~~~~~~~ 74 (154)
++++.|+.|.+||+. +.+ .............++|+ |+|+++++++. ++++.++|..+.+....+....
T Consensus 212 yv~~~dg~V~viD~~~~t~~-----~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~ 286 (567)
T 1qks_A 212 FVIGRDGKVNMIDLWMKEPT-----TVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRG 286 (567)
T ss_dssp EEEETTSEEEEEETTSSSCC-----EEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCE
T ss_pred EEEcCCCeEEEEECCCCCCc-----EeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccc
Confidence 456789999999995 333 23333334456899999 69998888765 5899999998877765543211
Q ss_pred C--CC----ceEeEEEEEEcCCCc-EEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEE-EEcCCC
Q 038702 75 Q--TG----RWISSFRAIWGWDDS-CIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLA-GATGGG 146 (154)
Q Consensus 75 ~--~~----~~~~~~~~~~~~~~~-~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~ 146 (154)
. .+ .......+..++++. +++....+|.|.++|..+.+.+....-. .......+.|+| ++++++ +...++
T Consensus 287 ~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~p-dgr~~~va~~~sn 364 (567)
T 1qks_A 287 MTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDG-SHRYFITAANARN 364 (567)
T ss_dssp ECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECT-TSCEEEEEEGGGT
T ss_pred cccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECC-CCCEEEEEeCCCC
Confidence 0 00 000222345677654 5555567799999998876533322211 122335678999 666654 455788
Q ss_pred eEEEeeCC
Q 038702 147 QVYVWTSD 154 (154)
Q Consensus 147 ~i~~wd~~ 154 (154)
+|.++|++
T Consensus 365 ~V~ViD~~ 372 (567)
T 1qks_A 365 KLVVIDTK 372 (567)
T ss_dssp EEEEEETT
T ss_pred eEEEEECC
Confidence 99999873
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1e-06 Score=55.42 Aligned_cols=134 Identities=11% Similarity=0.025 Sum_probs=88.2
Q ss_pred CCCcEEEEEccCCCCCCCCCceee--cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEE
Q 038702 6 TDGTACIWDLRSMATDKPEPTKVL--SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSF 83 (154)
Q Consensus 6 ~d~~v~vw~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (154)
.++.|.+||.. +. ..... .+...+.+++++++++.+++...++.|..|+... + ...+.... ... ...
T Consensus 34 ~~~~v~~~d~~-~~-----~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~-~~~~~~~~-~~~--~~~ 102 (299)
T 2z2n_A 34 KANMISCINLD-GK-----ITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKG-I-IKEYTLPN-PDS--APY 102 (299)
T ss_dssp TTTEEEEECTT-CC-----EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-C-EEEEECSS-TTC--CEE
T ss_pred CCCcEEEEcCC-CC-----eEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCC-c-EEEEeCCC-cCC--Cce
Confidence 35678888876 32 22222 2456789999999999888877788999999762 2 22222111 111 234
Q ss_pred EEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 84 RAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 84 ~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.+++.+++.++++...++.|..||. +++.. .+........+..+++++ ++.++++...++.|..||.
T Consensus 103 ~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~ 169 (299)
T 2z2n_A 103 GITEGPNGDIWFTEMNGNRIGRITD-DGKIR-EYELPNKGSYPSFITLGS-DNALWFTENQNNAIGRITE 169 (299)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECT-TCCEE-EEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT
T ss_pred eeEECCCCCEEEEecCCceEEEECC-CCCEE-EecCCCCCCCCceEEEcC-CCCEEEEeCCCCEEEEEcC
Confidence 5678899988888777889999998 55433 222222223346788888 6778887777788988875
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=3.1e-07 Score=57.36 Aligned_cols=142 Identities=9% Similarity=-0.004 Sum_probs=94.2
Q ss_pred eecCCCcEEEEEccCCCCCCCCCceeeccc-CCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE-
Q 038702 3 TSSTDGTACIWDLRSMATDKPEPTKVLSHK-RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI- 80 (154)
Q Consensus 3 ~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~- 80 (154)
+...++.+.++|..+.+. ...+... .. ...++++++.++++..++++.+.|..+.+....+..... +..+
T Consensus 81 ~t~~~~~v~viD~~t~~v-----~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~-~~p~~ 152 (266)
T 2iwa_A 81 VVWLKNIGFIYDRRTLSN-----IKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN-GHRVI 152 (266)
T ss_dssp EETTCSEEEEEETTTTEE-----EEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET-TEECC
T ss_pred EEecCCEEEEEECCCCcE-----EEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC-Ccccc
Confidence 345678899999887653 3333222 22 233556888777777889999999998776655443211 1111
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCC-----------cCCcceEEEecCCCccEEEEEcCCCeEE
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPY-----------ISAIPCRFHAHPHQVGTLAGATGGGQVY 149 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 149 (154)
....+.|. ++..++....++.|.+.|..+++.+..+.... .......++++|....+++++...+++.
T Consensus 153 ~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~ 231 (266)
T 2iwa_A 153 RLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLF 231 (266)
T ss_dssp CEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEE
T ss_pred cceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEE
Confidence 11234556 67666666568899999999999888886321 1124478999996667888888889988
Q ss_pred EeeC
Q 038702 150 VWTS 153 (154)
Q Consensus 150 ~wd~ 153 (154)
..++
T Consensus 232 ~i~l 235 (266)
T 2iwa_A 232 EIKL 235 (266)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7765
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.84 E-value=6.4e-07 Score=56.87 Aligned_cols=137 Identities=5% Similarity=0.022 Sum_probs=82.5
Q ss_pred ecCCCcEEEEEccCCCCCCCCCceee-----cccCCeEEEEEcCC-CCEEEEeeCCCeEEEEecccccccee-EeecCCC
Q 038702 4 SSTDGTACIWDLRSMATDKPEPTKVL-----SHKRAVHSAYFSPS-GSSLATTSFDDTIGIWSGVNFENTAM-IHHNNQT 76 (154)
Q Consensus 4 ~~~d~~v~vw~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~-~~~l~~~~~d~~v~~~~~~~~~~~~~-~~~~~~~ 76 (154)
+..++.|.+||..+++. ..+. ++...+.++.++++ ++++++.. .+.|.+||.. ++.... ..... .
T Consensus 42 ~~~~~~i~~~d~~~g~~-----~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~-~ 113 (314)
T 1pjx_A 42 GKPAGEILRIDLKTGKK-----TVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSE-G 113 (314)
T ss_dssp TEECCEEEEECTTTCCE-----EEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTT-S
T ss_pred CCCCCEEEEEeCCCCcE-----EEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCC-C
Confidence 35678899998766542 2222 25577899999999 76555544 4478889987 443222 11110 0
Q ss_pred CceEeEEEEEEcCCCcEEEEEccC---------------CeEEEecCCCccceeEEeCCCcCCcceEEEec----CCCcc
Q 038702 77 GRWISSFRAIWGWDDSCIFIGNMT---------------RTVEVISPAQRRSVATLQSPYISAIPCRFHAH----PHQVG 137 (154)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~d---------------~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 137 (154)
........++++++++++++...+ +.|..++.. ++...... .. .....++++ | +++
T Consensus 114 ~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~-~~--~~~~~i~~~~~~d~-dg~ 188 (314)
T 1pjx_A 114 RRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT-AF--QFPNGIAVRHMNDG-RPY 188 (314)
T ss_dssp CBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE-EE--SSEEEEEEEECTTS-CEE
T ss_pred ccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc-CC--CCcceEEEecccCC-CCC
Confidence 111122356789999888777655 567777765 44332222 11 123567888 8 664
Q ss_pred E-EEEEcCCCeEEEeeC
Q 038702 138 T-LAGATGGGQVYVWTS 153 (154)
Q Consensus 138 ~-l~~~~~d~~i~~wd~ 153 (154)
. +++...++.|.+||+
T Consensus 189 ~l~v~~~~~~~i~~~~~ 205 (314)
T 1pjx_A 189 QLIVAETPTKKLWSYDI 205 (314)
T ss_dssp EEEEEETTTTEEEEEEE
T ss_pred EEEEEECCCCeEEEEEC
Confidence 4 555567889999984
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=1.9e-06 Score=55.44 Aligned_cols=136 Identities=10% Similarity=-0.125 Sum_probs=81.7
Q ss_pred eecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeE
Q 038702 3 TSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISS 82 (154)
Q Consensus 3 ~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (154)
+...++.|..||..++. .........+.++.++|+++++++. .+ .|.+||..+++......... .......
T Consensus 66 ~d~~~~~i~~~d~~~~~------~~~~~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~-~~~~~~~ 136 (326)
T 2ghs_A 66 FNILERELHELHLASGR------KTVHALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELES-DLPGNRS 136 (326)
T ss_dssp EEGGGTEEEEEETTTTE------EEEEECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSST-TCTTEEE
T ss_pred EECCCCEEEEEECCCCc------EEEEECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCC-CCCCCCC
Confidence 44556778888876543 1223345679999999999877764 44 48899987765433322111 1111233
Q ss_pred EEEEEcCCCcEEEEEcc------CCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccE-EEEEcCCCeEEEeeC
Q 038702 83 FRAIWGWDDSCIFIGNM------TRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGT-LAGATGGGQVYVWTS 153 (154)
Q Consensus 83 ~~~~~~~~~~~l~~~~~------d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~d~~i~~wd~ 153 (154)
..++++|+|+++++... .+.|..++ +++.. .+... ......++|+| +++. +++.+.++.|.+||+
T Consensus 137 ~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~--~~~~~~i~~s~-dg~~lyv~~~~~~~I~~~d~ 208 (326)
T 2ghs_A 137 NDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFAD--ISIPNSICFSP-DGTTGYFVDTKVNRLMRVPL 208 (326)
T ss_dssp EEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEE--ESSEEEEEECT-TSCEEEEEETTTCEEEEEEB
T ss_pred CCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCC--CcccCCeEEcC-CCCEEEEEECCCCEEEEEEc
Confidence 46788999987765432 24555565 44332 22211 12235788999 6654 455567789999986
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.2e-07 Score=66.89 Aligned_cols=115 Identities=13% Similarity=0.034 Sum_probs=74.2
Q ss_pred ccCCeEEEEEcCCCCEEEEe-----eCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCC----
Q 038702 31 HKRAVHSAYFSPSGSSLATT-----SFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTR---- 101 (154)
Q Consensus 31 ~~~~v~~~~~~~~~~~l~~~-----~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~---- 101 (154)
|...+..++|||+|++++.+ +....|+++|+.+++........ +....++|+ |++.|+.+..+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~------~k~~~~~Ws-Dg~~l~y~~~~~~~~~ 199 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD------VKFSGISWL-GNEGFFYSSYDKPDGS 199 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE------EESCCCEEE-TTTEEEEEESSCCC--
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC------ceeccEEEe-CCCEEEEEEecCcccc
Confidence 44568899999999988843 33457999999988754321111 101245799 999888887774
Q ss_pred ---------eEEEecCCCccc--eeEEeCCC-cCCcceEEEecCCCccEEEEEc----CCCeEEEeeC
Q 038702 102 ---------TVEVISPAQRRS--VATLQSPY-ISAIPCRFHAHPHQVGTLAGAT----GGGQVYVWTS 153 (154)
Q Consensus 102 ---------~i~i~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~----~d~~i~~wd~ 153 (154)
.|++|++.++.. ...+.... .......+.++| ++++|+... ....|+++|+
T Consensus 200 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~ 266 (693)
T 3iuj_A 200 ELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSGNRLYVKDL 266 (693)
T ss_dssp -----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSCCEEEEEET
T ss_pred cccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEEC
Confidence 399999887653 22232222 122235788999 677664333 2358899886
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.82 E-value=6.8e-10 Score=72.66 Aligned_cols=134 Identities=14% Similarity=0.019 Sum_probs=66.0
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecc-cCCeE-EEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSH-KRAVH-SAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~-~~~v~-~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
++++.|+.|+.||..+++. ......+ ...+. +..+. .+..+++++.++.+..||.++++....+....
T Consensus 53 v~~s~dg~l~a~d~~tG~~----~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----- 122 (369)
T 2hz6_A 53 LPDPNDGSLYTLGSKNNEG----LTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----- 122 (369)
T ss_dssp EECTTTCCEEEC-----CC----SEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC-----------------
T ss_pred EEeCCCCEEEEEECCCCce----eeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-----
Confidence 4567899999999987664 2111111 11110 00111 34567888899999999999887754433211
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCC--CccEEEEEcCCCeEEEeeC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPH--QVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~d~~i~~wd~ 153 (154)
...++|++..+++++.++.|+.||.++++.+..+..... ....+.+. ....++.++.||.++.||.
T Consensus 123 ----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~----~~~~~~~~~~~~~~v~~~~~dg~v~a~d~ 190 (369)
T 2hz6_A 123 ----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFDY----AASLPEDDVDYKMSHFVSNGDGLVVTVDS 190 (369)
T ss_dssp --------------EEEEEEEEEEECCCSSSSSCCCEEEEEEE----CCBCCCCCTTCCCCEEEEETSCEEEEECT
T ss_pred ----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecccc----cCccccCCccccceEEEECCCCEEEEEEC
Confidence 112456788899999999999999999987766542211 11222220 0145667888999999986
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=3e-07 Score=64.88 Aligned_cols=140 Identities=9% Similarity=0.023 Sum_probs=83.2
Q ss_pred ecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCC-------------eEEEEeccccccce-e
Q 038702 4 SSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDD-------------TIGIWSGVNFENTA-M 69 (154)
Q Consensus 4 ~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-------------~v~~~~~~~~~~~~-~ 69 (154)
|++...|++||+.+++. ....-+......++|+ |++.|+.++.+. .|.+|++.+..... .
T Consensus 151 G~~~~~i~v~dl~tg~~-----~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~ 224 (693)
T 3iuj_A 151 GSDWREIHLMDVESKQP-----LETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRL 224 (693)
T ss_dssp SCCEEEEEEEETTTCSE-----EEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEE
T ss_pred CCceEEEEEEECCCCCC-----CccccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceE
Confidence 44456799999988762 2221111113567899 999998888774 39999988765432 2
Q ss_pred EeecCC-CCceEeEEEEEEcCCCcEEEEEcc----CCeEEEecCCCcc-ceeEEeCCCcCCcceEEEecCCCccEEEEEc
Q 038702 70 IHHNNQ-TGRWISSFRAIWGWDDSCIFIGNM----TRTVEVISPAQRR-SVATLQSPYISAIPCRFHAHPHQVGTLAGAT 143 (154)
Q Consensus 70 ~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 143 (154)
+..... +. .....+.|+|++++|+.... ++.|+++|+.+++ ....+..+..... .. +.+..+.+++...
T Consensus 225 v~~~~~~~~--~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~--~~-~~~~g~~l~~~t~ 299 (693)
T 3iuj_A 225 VFGAIPAQH--HRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADV--SL-VDNKGSTLYLLTN 299 (693)
T ss_dssp EESCSGGGC--CSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCE--EE-EEEETTEEEEEEC
T ss_pred EEecCCCCC--eEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceE--EE-EeccCCEEEEEEC
Confidence 222111 11 12345679999998865442 2589999998764 3445554333322 22 4442445555555
Q ss_pred CC---CeEEEeeCC
Q 038702 144 GG---GQVYVWTSD 154 (154)
Q Consensus 144 ~d---~~i~~wd~~ 154 (154)
.+ +.|..+|++
T Consensus 300 ~~~~~~~l~~~d~~ 313 (693)
T 3iuj_A 300 RDAPNRRLVTVDAA 313 (693)
T ss_dssp TTCTTCEEEEEETT
T ss_pred CCCCCCEEEEEeCC
Confidence 43 578888763
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.80 E-value=1.8e-06 Score=54.74 Aligned_cols=111 Identities=5% Similarity=-0.047 Sum_probs=71.7
Q ss_pred ecccCCeEEEEEcCCCCEEE-EeeCCCeEEEEecc--ccccc--eeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeE
Q 038702 29 LSHKRAVHSAYFSPSGSSLA-TTSFDDTIGIWSGV--NFENT--AMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTV 103 (154)
Q Consensus 29 ~~~~~~v~~~~~~~~~~~l~-~~~~d~~v~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 103 (154)
..+......++|+|+++.++ +.+.++.|..|++. ++... ..+........ ..-.+++.++|++.++....+.|
T Consensus 145 ~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~--~p~g~~~d~~G~lwva~~~~~~v 222 (297)
T 3g4e_A 145 FDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQ--IPDGMCIDAEGKLWVACYNGGRV 222 (297)
T ss_dssp EEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGC--EEEEEEEBTTSCEEEEEETTTEE
T ss_pred eeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCC--CCCeeEECCCCCEEEEEcCCCEE
Confidence 34445668999999998664 45567899999873 33221 11111111111 22356789999888887778889
Q ss_pred EEecCCCccceeEEeCCCcCCcceEEEec-CCCcc-EEEEEcC
Q 038702 104 EVISPAQRRSVATLQSPYISAIPCRFHAH-PHQVG-TLAGATG 144 (154)
Q Consensus 104 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~l~~~~~ 144 (154)
..||..+++.+..+..+... +..++|. | +.+ ++++...
T Consensus 223 ~~~d~~tG~~~~~i~~p~~~--~t~~~f~g~-d~~~L~vt~~~ 262 (297)
T 3g4e_A 223 IRLDPVTGKRLQTVKLPVDK--TTSCCFGGK-NYSEMYVTCAR 262 (297)
T ss_dssp EEECTTTCCEEEEEECSSSB--EEEEEEESG-GGCEEEEEEBC
T ss_pred EEEcCCCceEEEEEECCCCC--ceEEEEeCC-CCCEEEEEcCC
Confidence 99999999988888755322 3578887 5 444 4455543
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.8e-06 Score=53.44 Aligned_cols=134 Identities=13% Similarity=0.005 Sum_probs=86.6
Q ss_pred CCCcEEEEEccCCCCCCCCCceee--cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEE
Q 038702 6 TDGTACIWDLRSMATDKPEPTKVL--SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSF 83 (154)
Q Consensus 6 ~d~~v~vw~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (154)
.++.|..+|.. ++ ..... .....+.++++.++++.+++...++.|..++.. .+... ..... ... ...
T Consensus 81 ~~~~v~~~d~~-g~-----~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~-~~~~~-~~~--~~~ 149 (300)
T 2qc5_A 81 GANKIGKLSKK-GG-----FTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYE-YDLPN-KGS--YPA 149 (300)
T ss_dssp TTTEEEEECTT-SC-----EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEE-EECSS-TTC--CEE
T ss_pred CCCeEEEECCC-CC-----eEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEE-ccCCC-CCC--Cce
Confidence 35667777765 32 22121 234678999999999988887778899999886 33222 11111 111 234
Q ss_pred EEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 84 RAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 84 ~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.+++.++++++++...++.|..++. +++... +........+..+++++ ++.++++....+.|.+||.
T Consensus 150 ~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~ 216 (300)
T 2qc5_A 150 FITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGN-DGALWFVEIMGNKIGRITT 216 (300)
T ss_dssp EEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT
T ss_pred eEEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECC-CCCEEEEccCCCEEEEEcC
Confidence 5678899997777776789999998 555433 33222223346788888 6777777777788988875
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.80 E-value=3.2e-07 Score=61.10 Aligned_cols=104 Identities=14% Similarity=0.072 Sum_probs=74.0
Q ss_pred CcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEee----------CCCeEEEEeccccccceeEeec--CC
Q 038702 8 GTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTS----------FDDTIGIWSGVNFENTAMIHHN--NQ 75 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~v~~~~~~~~~~~~~~~~~--~~ 75 (154)
+.|.++|..+.+. ...+.--..+ .+.++|++++++.+. .++.|.++|..+.+....+... ..
T Consensus 99 ~~VsVID~~t~~v----v~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r 172 (426)
T 3c75_H 99 TQQFVIDGSTGRI----LGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPR 172 (426)
T ss_dssp EEEEEEETTTTEE----EEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC
T ss_pred CeEEEEECCCCEE----EEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccc
Confidence 6899999988763 2233222234 899999999888876 4678999999998776554432 00
Q ss_pred --CCceEeEEEEEEcCCCcEEEEEcc--CCeEEEecCCCccceeEEeC
Q 038702 76 --TGRWISSFRAIWGWDDSCIFIGNM--TRTVEVISPAQRRSVATLQS 119 (154)
Q Consensus 76 --~~~~~~~~~~~~~~~~~~l~~~~~--d~~i~i~~~~~~~~~~~~~~ 119 (154)
.+. ....+.++|++++++.+.. ++.|.+.|+.+++.+.++..
T Consensus 173 ~~~g~--~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v 218 (426)
T 3c75_H 173 FLVGT--YQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV 218 (426)
T ss_dssp CCBSC--CGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred cccCC--CcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEc
Confidence 000 0113468999999998864 57899999999998888774
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.8e-06 Score=57.38 Aligned_cols=138 Identities=12% Similarity=0.007 Sum_probs=84.2
Q ss_pred cEEEEEccCCCCCCCCCcee---ec-ccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEE-
Q 038702 9 TACIWDLRSMATDKPEPTKV---LS-HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSF- 83 (154)
Q Consensus 9 ~v~vw~~~~~~~~~~~~~~~---~~-~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~- 83 (154)
.|.+++...... .... .. ....+.+++++|++..|+.+..++.|..||..+...................+
T Consensus 195 ~I~~~d~~~~~~----~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~ 270 (409)
T 3hrp_A 195 TVYVYMKASGWA----PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGP 270 (409)
T ss_dssp EEEEEEGGGTTC----EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCC
T ss_pred eEEEEEcCCCce----eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccc
Confidence 677777654432 1111 12 44567889999955555557778899999998765332211100000001112
Q ss_pred EEEEcCC-CcEEEEEccCCeEEEecCCCccceeEEeCCC-------------cCCcceEEEecCCCccEEEEEc-CCCeE
Q 038702 84 RAIWGWD-DSCIFIGNMTRTVEVISPAQRRSVATLQSPY-------------ISAIPCRFHAHPHQVGTLAGAT-GGGQV 148 (154)
Q Consensus 84 ~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~l~~~~-~d~~i 148 (154)
.++|+|+ +.++++-..++.|+.|+.... +..+.+.. ....+..++++| +++++++-. .++.|
T Consensus 271 ~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~-dG~lyvad~~~~~~I 347 (409)
T 3hrp_A 271 YLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDE-DGNFYIVDGFKGYCL 347 (409)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT-TCCEEEEETTTTCEE
T ss_pred cEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC-CCCEEEEeCCCCCEE
Confidence 5688995 666677777889999987643 33332221 012356889999 778888888 88999
Q ss_pred EEeeC
Q 038702 149 YVWTS 153 (154)
Q Consensus 149 ~~wd~ 153 (154)
+.||+
T Consensus 348 ~~~~~ 352 (409)
T 3hrp_A 348 RKLDI 352 (409)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 99983
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.78 E-value=4.5e-07 Score=59.58 Aligned_cols=108 Identities=19% Similarity=0.060 Sum_probs=79.7
Q ss_pred EEcCCCCEEEEeeC-----CCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEc----------cCCeE
Q 038702 39 YFSPSGSSLATTSF-----DDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGN----------MTRTV 103 (154)
Q Consensus 39 ~~~~~~~~l~~~~~-----d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~d~~i 103 (154)
...|+++.++.... ++.|.+.|..+.+....+..... . .++++|++++++.++ .++.|
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~-P------~va~spDG~~lyVan~~~~r~~~G~~~~~V 111 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL-P------NPVVADDGSFIAHASTVFSRIARGERTDYV 111 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS-C------EEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC-C------cEEECCCCCEEEEEcccccccccCCCCCEE
Confidence 44688988888765 67999999998887766654332 1 257899999887775 36789
Q ss_pred EEecCCCccceeEEeCCC-----cCCcceEEEecCCCccEEEEEcC--CCeEEEeeCC
Q 038702 104 EVISPAQRRSVATLQSPY-----ISAIPCRFHAHPHQVGTLAGATG--GGQVYVWTSD 154 (154)
Q Consensus 104 ~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~--d~~i~~wd~~ 154 (154)
.+||..+.+.+.++.... ....+..+.++| +++++..+.. ++.|.++|++
T Consensus 112 sviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~~~~~~VsVID~~ 168 (386)
T 3sjl_D 112 EVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLE 168 (386)
T ss_dssp EEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETT
T ss_pred EEEECCCCeEEEEEECCCccccccCCCCceEEEcC-CCCEEEEEEcCCCCeEEEEECC
Confidence 999999999888876322 112345689999 7777766653 6899999973
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.72 E-value=7.9e-06 Score=51.36 Aligned_cols=135 Identities=10% Similarity=-0.012 Sum_probs=88.1
Q ss_pred cCCCcEEEEEccCCCCCCCCCceee--cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeE
Q 038702 5 STDGTACIWDLRSMATDKPEPTKVL--SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISS 82 (154)
Q Consensus 5 ~~d~~v~vw~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (154)
..++.|.+||.. ++ ..... .....+..++++++++.+++...++.|..+|.. .+.. .+.... ... ..
T Consensus 38 ~~~~~v~~~~~~-~~-----~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~-~~~--~~ 106 (300)
T 2qc5_A 38 HKANKISSLDQS-GR-----IKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EYPLPQ-PDS--GP 106 (300)
T ss_dssp TTTTEEEEECTT-SC-----EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSS-TTC--CE
T ss_pred CCCCeEEEECCC-Cc-----eEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-EecCCC-CCC--CC
Confidence 345677778765 32 22211 234678999999999988877778899999987 3332 222111 111 23
Q ss_pred EEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 83 FRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 83 ~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
..+++.+++.++++...++.|..++.. ++.. .+........+..+++++ +++++++...++.|..+|.
T Consensus 107 ~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~ 174 (300)
T 2qc5_A 107 YGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-EYDLPNKGSYPAFITLGS-DNALWFTENQNNSIGRITN 174 (300)
T ss_dssp EEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT
T ss_pred ccceECCCCCEEEEccCCCeEEEECCC-CCEE-EccCCCCCCCceeEEECC-CCCEEEEecCCCeEEEECC
Confidence 456788999988887778899999987 5443 232222223346788888 6777777777788888875
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.71 E-value=4e-06 Score=56.07 Aligned_cols=146 Identities=10% Similarity=0.143 Sum_probs=93.0
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeec-------cc-CCeEEEEEcCCCCEEEEeeCC------CeEEEEeccccccc
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLS-------HK-RAVHSAYFSPSGSSLATTSFD------DTIGIWSGVNFENT 67 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~-------~~-~~v~~~~~~~~~~~l~~~~~d------~~v~~~~~~~~~~~ 67 (154)
++|-.++.|.++|+.+.... ++..+... .. ..-..+...|+| .++++..+ +.+.+.|..+.+..
T Consensus 100 v~~l~s~~I~viD~~t~p~~-p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~ 177 (462)
T 2ece_A 100 VPGLRSSRIYIIDTKPNPRE-PKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPL 177 (462)
T ss_dssp EEBTTTCCEEEEECCSCTTS-CEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEE
T ss_pred EccCCCCeEEEEECCCCCCC-ceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEE
Confidence 56778899999999754321 22333331 11 245667888999 76666555 78999999988776
Q ss_pred eeEeecCCCCceEeEEEEEEcCCCcEEEEEc-------------------cCCeEEEecCCCccceeEEeCCCcCCcceE
Q 038702 68 AMIHHNNQTGRWISSFRAIWGWDDSCIFIGN-------------------MTRTVEVISPAQRRSVATLQSPYISAIPCR 128 (154)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------------------~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 128 (154)
......... ....+.+.|+|+++.++++. .+..|.+||+.+++.+.++........+..
T Consensus 178 ~~~~~~~~~--~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~ 255 (462)
T 2ece_A 178 GKWEIDRGD--QYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALE 255 (462)
T ss_dssp EECCSBCTT--CCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEE
T ss_pred EEEccCCCC--ccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccce
Confidence 555422111 11223456899999888874 367999999999888888875322223333
Q ss_pred --EEecCCCccEEE-EEc-----CCCeEEEee
Q 038702 129 --FHAHPHQVGTLA-GAT-----GGGQVYVWT 152 (154)
Q Consensus 129 --~~~~~~~~~~l~-~~~-----~d~~i~~wd 152 (154)
++++| ++.++. ++. .+++|.+|.
T Consensus 256 i~f~~~P-dg~~aYV~~e~~~~~Lss~V~v~~ 286 (462)
T 2ece_A 256 LRPLHDP-TKLMGFINMVVSLKDLSSSIWLWF 286 (462)
T ss_dssp EEECSST-TCCEEEEEEEEETTTCCEEEEEEE
T ss_pred eEeeECC-CCCEEEEEEeeeccCCCceEEEEE
Confidence 45598 555544 444 566776654
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=4.7e-07 Score=59.26 Aligned_cols=99 Identities=15% Similarity=0.060 Sum_probs=68.0
Q ss_pred cEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEee----------CCCeEEEEeccccccceeEeecCCC--
Q 038702 9 TACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTS----------FDDTIGIWSGVNFENTAMIHHNNQT-- 76 (154)
Q Consensus 9 ~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~v~~~~~~~~~~~~~~~~~~~~-- 76 (154)
.|.++|..+++. ...+..-..+ .+.++|++++++.+. .++.|.+||+.+.+....+......
T Consensus 47 ~vsvID~~t~~v----~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~ 120 (368)
T 1mda_H 47 ENWVSCAGCGVT----LGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRF 120 (368)
T ss_dssp EEEEEETTTTEE----EEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSC
T ss_pred eEEEEECCCCeE----EEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcccc
Confidence 788999888763 3333322234 799999999888886 3788999999998887665432000
Q ss_pred --CceEeEEEEEEcCCCcEEEEEcc--CCeEEE--ecCCCccceeEEe
Q 038702 77 --GRWISSFRAIWGWDDSCIFIGNM--TRTVEV--ISPAQRRSVATLQ 118 (154)
Q Consensus 77 --~~~~~~~~~~~~~~~~~l~~~~~--d~~i~i--~~~~~~~~~~~~~ 118 (154)
+. ....+.++|+|++++.+.. +..+.+ +|..+ +..+.
T Consensus 121 ~~g~--~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~ 163 (368)
T 1mda_H 121 SVGP--RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTK 163 (368)
T ss_dssp CBSC--CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEE
T ss_pred ccCC--CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEE
Confidence 00 0113578999999998864 467888 99987 44454
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.4e-05 Score=49.73 Aligned_cols=136 Identities=10% Similarity=-0.004 Sum_probs=88.3
Q ss_pred ecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE-eE
Q 038702 4 SSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI-SS 82 (154)
Q Consensus 4 ~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~ 82 (154)
...++.+.++|..+.+. ...+.....=..++ +++..|+.+..++.|.++|.++.+....+..... +..+ ..
T Consensus 112 tw~~~~v~V~D~~Tl~~-----~~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~-g~~v~~l 183 (268)
T 3nok_A 112 TWTEGLLFTWSGMPPQR-----ERTTRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLR-GQPVELI 183 (268)
T ss_dssp ESSSCEEEEEETTTTEE-----EEEEECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEET-TEECCCE
T ss_pred EccCCEEEEEECCcCcE-----EEEEeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCC-Ccccccc
Confidence 44678899999887663 33332222223333 5788888888899999999998877655543221 1111 11
Q ss_pred EEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCC-----------CcCCcceEEEecCCCccEEEEEcCCCeE
Q 038702 83 FRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSP-----------YISAIPCRFHAHPHQVGTLAGATGGGQV 148 (154)
Q Consensus 83 ~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~d~~i 148 (154)
-.+.|. +|+.++..-.+..|.+.|.++++.+..+... ........++++|....++++|-.-..+
T Consensus 184 NeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~ 259 (268)
T 3nok_A 184 NELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRL 259 (268)
T ss_dssp EEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEE
T ss_pred cccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCce
Confidence 123444 7766666556889999999999988887632 1223457899999777888888654443
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.62 E-value=7.3e-06 Score=51.04 Aligned_cols=134 Identities=12% Similarity=0.048 Sum_probs=86.8
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEE--EEEcCCCCEEEE-eeCCCeEEEEeccccccceeEeecCCCCc
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHS--AYFSPSGSSLAT-TSFDDTIGIWSGVNFENTAMIHHNNQTGR 78 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~l~~-~~~d~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (154)
.+.+.+|.|+++|+.+++. .... -...... +.+ .++.|+. .-.++.+.++|..+.+....+.... .+
T Consensus 69 ~stG~~g~v~~iD~~Tgkv----~~~~--l~~~~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~-eG- 138 (268)
T 3nok_A 69 ESTGHQGTLRQLSLESAQP----VWME--RLGNIFAEGLAS--DGERLYQLTWTEGLLFTWSGMPPQRERTTRYSG-EG- 138 (268)
T ss_dssp EEETTTTEEEECCSSCSSC----SEEE--ECTTCCEEEEEE--CSSCEEEEESSSCEEEEEETTTTEEEEEEECSS-CC-
T ss_pred EEcCCCCEEEEEECCCCcE----EeEE--CCCCcceeEEEE--eCCEEEEEEccCCEEEEEECCcCcEEEEEeCCC-ce-
Confidence 4667788899999998874 3333 2233333 444 4444444 4468899999999988877666532 22
Q ss_pred eEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcC---CcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 79 WISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYIS---AIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
. .+ .++++.|+.+..++.|+++|..+.+.+.++.-...+ .....+.|. ++.+++....+..|.+.|+
T Consensus 139 --w--GL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~--dG~lyanvw~s~~I~vIDp 208 (268)
T 3nok_A 139 --W--GL--CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA--NGVIYANIWHSSDVLEIDP 208 (268)
T ss_dssp --C--CE--EEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTCSEEEEECT
T ss_pred --e--EE--ecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe--CCEEEEEECCCCeEEEEeC
Confidence 1 11 246777777777889999999999988877642211 111344555 4566666666778888775
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.60 E-value=2.1e-05 Score=51.65 Aligned_cols=113 Identities=7% Similarity=-0.042 Sum_probs=71.0
Q ss_pred EEEcCCCCEEEEeeCCCeEEEEeccccccceeEee--cCC----CC-ceEeEEEEEEcCCCcEEEEEcc----------C
Q 038702 38 AYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHH--NNQ----TG-RWISSFRAIWGWDDSCIFIGNM----------T 100 (154)
Q Consensus 38 ~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~--~~~----~~-~~~~~~~~~~~~~~~~l~~~~~----------d 100 (154)
..+.+++..++..+..+.+.+.|+........... ... .+ .......+.++|+++.++.... .
T Consensus 218 ~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~ 297 (373)
T 2mad_H 218 PAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAA 297 (373)
T ss_pred ceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCC
Confidence 34566555555445778888888865432211110 000 00 0000112567899887777543 3
Q ss_pred CeEEEecCCCccceeEEeCCCcCCcceEEEecCCCcc-EEEEEc-CCCeEEEeeCC
Q 038702 101 RTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVG-TLAGAT-GGGQVYVWTSD 154 (154)
Q Consensus 101 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~-~d~~i~~wd~~ 154 (154)
+.|.++|..+++.+.++.... .+..+.++| +++ +++++. .++.|.++|++
T Consensus 298 ~~V~VID~~t~~vv~~i~~g~---~p~~i~~s~-Dg~~~l~v~~~~~~~V~ViD~~ 349 (373)
T 2mad_H 298 KEVTSVTGLVGQTSSQISLGH---DVDAISVAQ-DGGPDLYALSAGTEVLHIYDAG 349 (373)
T ss_pred CeEEEEECCCCEEEEEEECCC---CcCeEEECC-CCCeEEEEEcCCCCeEEEEECC
Confidence 579999999999988886433 236789999 666 677776 58999999973
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.59 E-value=1.3e-05 Score=49.92 Aligned_cols=135 Identities=8% Similarity=0.085 Sum_probs=86.3
Q ss_pred ecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEE
Q 038702 4 SSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSF 83 (154)
Q Consensus 4 ~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (154)
...++.+.++|..+.+ ....+.... ....+++++..|+.+..++.|.++|..+.+....+.... .+..+..+
T Consensus 103 tw~~~~v~v~D~~t~~-----~~~ti~~~~--eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~-~g~~~~~l 174 (262)
T 3nol_A 103 TWKNGLGFVWNIRNLR-----QVRSFNYDG--EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA-HGEELPEL 174 (262)
T ss_dssp ESSSSEEEEEETTTCC-----EEEEEECSS--CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEE-TTEECCCE
T ss_pred EeeCCEEEEEECccCc-----EEEEEECCC--CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc-CCcccccc
Confidence 3457889999988766 333332222 222334577878877778899999999887665544321 11111111
Q ss_pred -EEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCC----------CcCCcceEEEecCCCccEEEEEcCCCe
Q 038702 84 -RAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSP----------YISAIPCRFHAHPHQVGTLAGATGGGQ 147 (154)
Q Consensus 84 -~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~~~~~d~~ 147 (154)
.+.|. +|+.++..-.++.|.+.|.++++.+..+... ........++++|....++++|-.-..
T Consensus 175 NELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~ 248 (262)
T 3nol_A 175 NELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPK 248 (262)
T ss_dssp EEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSE
T ss_pred ceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCc
Confidence 23444 6776666667889999999999988887642 112344789999966677788765443
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=4.1e-06 Score=59.14 Aligned_cols=81 Identities=7% Similarity=0.005 Sum_probs=52.3
Q ss_pred CeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecC
Q 038702 54 DTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHP 133 (154)
Q Consensus 54 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (154)
+.|..||+.+++..-......... ...+...+..++.++.|+.+++||.++++.+..+..... ....-+.+.+
T Consensus 457 g~l~A~D~~tG~~~W~~~~~~~~~------~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~-~~~~p~~y~~ 529 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEHVSPWN------GGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTG-VVAAPSTYMV 529 (677)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCC------CCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC-CCSCCEEEEE
T ss_pred cEEEEEeCCCCcEEeecCCCCCCc------CcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCC-cccCCEEEEe
Confidence 779999998887665544332110 112345677888899999999999999999999885432 2223345544
Q ss_pred CCccEEEE
Q 038702 134 HQVGTLAG 141 (154)
Q Consensus 134 ~~~~~l~~ 141 (154)
....+++.
T Consensus 530 ~G~~~v~~ 537 (677)
T 1kb0_A 530 DGRQYVSV 537 (677)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEE
Confidence 23344444
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.8e-06 Score=60.04 Aligned_cols=84 Identities=6% Similarity=-0.043 Sum_probs=53.6
Q ss_pred CCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEec
Q 038702 53 DDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAH 132 (154)
Q Consensus 53 d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (154)
+|.+..||+.+++..-......... ...+...+.+++.++.|+.++.||.++++.+..++.+.... ..-+.+.
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~~~~~------~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~-~~p~ty~ 526 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYVTIFN------GGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVM-AAPVTYS 526 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCC------CCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC-SCCEEEE
T ss_pred ceeEEEEECCCCCeEeEccCCCCcc------CccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcc-cCceEEE
Confidence 3778899998887665444322111 11234467788999999999999999999998887543322 2334554
Q ss_pred CCCccEEEEEc
Q 038702 133 PHQVGTLAGAT 143 (154)
Q Consensus 133 ~~~~~~l~~~~ 143 (154)
.+..+++++.+
T Consensus 527 ~~G~qyv~~~~ 537 (689)
T 1yiq_A 527 VDGEQYVTFMA 537 (689)
T ss_dssp ETTEEEEEEEE
T ss_pred ECCEEEEEEEe
Confidence 42334555443
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.50 E-value=8.5e-06 Score=50.65 Aligned_cols=136 Identities=10% Similarity=0.080 Sum_probs=85.2
Q ss_pred eecCCC--cEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEee-CCCeEEEEeccccccceeEeecCCCCce
Q 038702 3 TSSTDG--TACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 3 ~~~~d~--~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
+.+.+| .|+++|+.+++. .....-.......-..+.++.+.... .++.+.++|..+.+....+.... .+
T Consensus 58 stG~~g~S~v~~vD~~Tgkv-----~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~-eG-- 129 (262)
T 3nol_A 58 STGLNGRSSIRKVDIESGKT-----LQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG-EG-- 129 (262)
T ss_dssp EEEETTEEEEEEECTTTCCE-----EEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSS-CC--
T ss_pred ECCCCCCceEEEEECCCCcE-----EEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCC-Cc--
Confidence 344444 899999988763 33332233333333333455655554 58899999999988877666533 22
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCc--C-CcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYI--S-AIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
. . .++++..|+.+..++.|.++|..+.+.+..+..... . .....+.+. ++.+++..-.+..|.+.|+
T Consensus 130 -~--g--lt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~--~G~lyan~w~~~~I~vIDp 199 (262)
T 3nol_A 130 -W--G--LTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV--DGEIFANVWQTNKIVRIDP 199 (262)
T ss_dssp -C--C--EEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTSSEEEEECT
T ss_pred -e--E--EecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE--CCEEEEEEccCCeEEEEEC
Confidence 1 1 234677777766678899999999998888764221 1 111234554 4566666667778888775
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.6e-05 Score=51.47 Aligned_cols=121 Identities=5% Similarity=-0.080 Sum_probs=77.2
Q ss_pred CCeEEEEEcCCCCEEEEeeC--CCeEEEEeccccccceeEee--cCCCCceEeEEEEEEcCCCcEEEEEcc-----CCeE
Q 038702 33 RAVHSAYFSPSGSSLATTSF--DDTIGIWSGVNFENTAMIHH--NNQTGRWISSFRAIWGWDDSCIFIGNM-----TRTV 103 (154)
Q Consensus 33 ~~v~~~~~~~~~~~l~~~~~--d~~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~-----d~~i 103 (154)
.....++++|+|+.+++... ++.+++|.+.+++ ...+.. ............++++++++++++-.. +..|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 67899999999999888642 3435555554332 111110 111122345667889999887766543 5789
Q ss_pred EEecCCCccceeEEeCCCc----CCcceEEEecCCCccEEEEEc---CCCeEEEeeCC
Q 038702 104 EVISPAQRRSVATLQSPYI----SAIPCRFHAHPHQVGTLAGAT---GGGQVYVWTSD 154 (154)
Q Consensus 104 ~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~---~d~~i~~wd~~ 154 (154)
.+||+.+++.+..+..+.. ......++++|.++..+++.. .++.|.+||++
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~ 153 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQ 153 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETT
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECC
Confidence 9999999887776653211 122357888874455666665 67899999863
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=3.8e-05 Score=48.08 Aligned_cols=132 Identities=9% Similarity=-0.031 Sum_probs=83.8
Q ss_pred CCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCCCEEEEe-eCCCeEEEEeccccccceeEeecCCCCceEeEEE
Q 038702 7 DGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATT-SFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFR 84 (154)
Q Consensus 7 d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~-~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
++.|++.|+.+++. ..... +.......+.+. +..++.+ -.++.+.++|..+.+....+......+ .
T Consensus 43 ~s~v~~iD~~tg~v----~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g---~--- 110 (266)
T 2iwa_A 43 RSSVRQVALQTGKV----ENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDG---W--- 110 (266)
T ss_dssp TCEEEEEETTTCCE----EEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEECCSSSC---C---
T ss_pred CCEEEEEECCCCCE----EEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEECCCCCe---E---
Confidence 57899999988763 22221 222222344553 5455544 458899999999887776655431222 1
Q ss_pred EEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCc--C-CcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 85 AIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYI--S-AIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 85 ~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
..+++++.++++..++.|.++|..+.+.+..+.-... . .....+.+. ++.+++....++.|.+.|+
T Consensus 111 -glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~--dg~lyvn~~~~~~V~vID~ 179 (266)
T 2iwa_A 111 -GLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI--NGEVWANIWQTDCIARISA 179 (266)
T ss_dssp -EEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTSSEEEEEET
T ss_pred -EEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE--CCEEEEecCCCCeEEEEEC
Confidence 1345787777777788999999999988887763221 1 112455665 4566666667788888876
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.46 E-value=4.1e-05 Score=48.68 Aligned_cols=111 Identities=11% Similarity=-0.014 Sum_probs=67.3
Q ss_pred ccCCeEEEEEcCCCCEEEEeeCC------CeEEEEeccccccc--eeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCe
Q 038702 31 HKRAVHSAYFSPSGSSLATTSFD------DTIGIWSGVNFENT--AMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRT 102 (154)
Q Consensus 31 ~~~~v~~~~~~~~~~~l~~~~~d------~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 102 (154)
.......++|+|+++.|+.+... +.|..|++...... ..+... ..+. .-.+++.++|++.++ ..+ .
T Consensus 186 ~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~-~~~~---pdgi~~d~~G~lwv~-~~~-g 259 (305)
T 3dr2_A 186 DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV-PDGL---PDGFCVDRGGWLWSS-SGT-G 259 (305)
T ss_dssp EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC-SSSC---CCSEEECTTSCEEEC-CSS-E
T ss_pred cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC-CCCC---CCeEEECCCCCEEEe-cCC-c
Confidence 44566789999999987777654 68999998754311 111110 0110 113467889985544 444 5
Q ss_pred EEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 103 VEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 103 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
|.+|+. +++.+..+..+. . +..++|.| +++.|..++.++ +..+++
T Consensus 260 v~~~~~-~g~~~~~~~~~~-~--~~~~~f~~-d~~~L~it~~~~-l~~~~~ 304 (305)
T 3dr2_A 260 VCVFDS-DGQLLGHIPTPG-T--ASNCTFDQ-AQQRLFITGGPC-LWMLPL 304 (305)
T ss_dssp EEEECT-TSCEEEEEECSS-C--CCEEEECT-TSCEEEEEETTE-EEEEEC
T ss_pred EEEECC-CCCEEEEEECCC-c--eeEEEEeC-CCCEEEEEcCCe-EEEEEC
Confidence 999998 567777776443 2 35678887 666666666554 444443
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.45 E-value=5.1e-05 Score=46.75 Aligned_cols=136 Identities=12% Similarity=0.092 Sum_probs=86.8
Q ss_pred ecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeE-
Q 038702 4 SSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISS- 82 (154)
Q Consensus 4 ~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~- 82 (154)
...++.+.++|..+.+ ....+.....=..++ +++..|+.+..++.|.++|..+.+....+.... .+..+..
T Consensus 81 tw~~~~v~v~D~~tl~-----~~~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~-~g~~~~~l 152 (243)
T 3mbr_X 81 TWRNHEGFVYDLATLT-----PRARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA-GGRPLDNL 152 (243)
T ss_dssp ESSSSEEEEEETTTTE-----EEEEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEE-TTEECCCE
T ss_pred EeeCCEEEEEECCcCc-----EEEEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc-CCcccccc
Confidence 4567889999988766 333333322223443 577777777789999999999887665544321 1111111
Q ss_pred EEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCC-----------CcCCcceEEEecCCCccEEEEEcCCCeE
Q 038702 83 FRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSP-----------YISAIPCRFHAHPHQVGTLAGATGGGQV 148 (154)
Q Consensus 83 ~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~d~~i 148 (154)
-.+.|. +|+.++..-.+..|.+.|.++++.+..+... ........++++|....++++|-.=..+
T Consensus 153 NeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~ 228 (243)
T 3mbr_X 153 NELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPML 228 (243)
T ss_dssp EEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEE
T ss_pred eeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcE
Confidence 122333 6766666556789999999999988887632 1223457899999777788888654443
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.44 E-value=7.9e-05 Score=48.68 Aligned_cols=134 Identities=16% Similarity=0.048 Sum_probs=83.5
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEe
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWIS 81 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (154)
..++.++.+..+|..+++. .-... ......+.. ++..++.++.++.+..+|..+++.......... . ...
T Consensus 243 ~~~~~~g~l~~~d~~tG~~-----~w~~~-~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~-~-~~~ 312 (376)
T 3q7m_A 243 FALAYNGNLTALDLRSGQI-----MWKRE-LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLH-R-LLT 312 (376)
T ss_dssp EEECTTSCEEEEETTTCCE-----EEEEC-CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTT-S-CCC
T ss_pred EEEecCcEEEEEECCCCcE-----Eeecc-CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCC-C-ccc
Confidence 4566788899999877653 21111 222333333 466788888899999999988875533321111 0 111
Q ss_pred EEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 82 SFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.. .. .+..++.++.+|.+..+|.++++.+........... ...... +..|..++.+|.|+.||.
T Consensus 313 ~~--~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~-~~~~~~---~~~l~v~~~~G~l~~~~~ 376 (376)
T 3q7m_A 313 SP--VL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQ-TEPVAA---DGKLLIQAKDGTVYSITR 376 (376)
T ss_dssp CC--EE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBC-SCCEEE---TTEEEEEBTTSCEEEEEC
T ss_pred CC--EE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcce-eCCEEE---CCEEEEEeCCCEEEEEeC
Confidence 11 11 256788888999999999999998877764322222 222222 356778899999999873
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.42 E-value=3.1e-05 Score=51.86 Aligned_cols=141 Identities=11% Similarity=0.124 Sum_probs=83.2
Q ss_pred CCcEEEEEccCCCCCCCCCceee-c-cc-CCeEEEEEcCCCCEEEEee-------------------CCCeEEEEecccc
Q 038702 7 DGTACIWDLRSMATDKPEPTKVL-S-HK-RAVHSAYFSPSGSSLATTS-------------------FDDTIGIWSGVNF 64 (154)
Q Consensus 7 d~~v~vw~~~~~~~~~~~~~~~~-~-~~-~~v~~~~~~~~~~~l~~~~-------------------~d~~v~~~~~~~~ 64 (154)
.+.|.+.|..+.+. ..... + .. ..-..+-|+|+++.++++. .+.+|.+||+.+.
T Consensus 163 ~g~v~vlD~~T~~v----~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~ 238 (462)
T 2ece_A 163 PGGILMLDHYSFEP----LGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR 238 (462)
T ss_dssp CCEEEEECTTTCCE----EEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT
T ss_pred CCeEEEEECCCCeE----EEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC
Confidence 36788888876653 22221 1 11 2234688899999888884 4789999999876
Q ss_pred ccceeEeecCCCCceEeEEEEEEcCCCcEEEEEcc------CCeEEEecCCCcc--ceeEEeCCC---------------
Q 038702 65 ENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNM------TRTVEVISPAQRR--SVATLQSPY--------------- 121 (154)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------d~~i~i~~~~~~~--~~~~~~~~~--------------- 121 (154)
+....+..... +..-.-+.++++|++++++.++. +++|.+|....++ ..+.+....
T Consensus 239 k~~~tI~vg~~-g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~ 317 (462)
T 2ece_A 239 KRIHSLTLGEE-NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFK 317 (462)
T ss_dssp EEEEEEESCTT-EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGT
T ss_pred cEeeEEecCCC-CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccc
Confidence 54443333211 11112223345999998877774 5577766544332 112111000
Q ss_pred -cCCcceEEEecCCCccEE-EEEcCCCeEEEeeC
Q 038702 122 -ISAIPCRFHAHPHQVGTL-AGATGGGQVYVWTS 153 (154)
Q Consensus 122 -~~~~~~~~~~~~~~~~~l-~~~~~d~~i~~wd~ 153 (154)
....+..+.++| ++++| ++.-..+.|.+||+
T Consensus 318 ~~~~~pa~I~lS~-DGrfLYVSnrg~d~VavfdV 350 (462)
T 2ece_A 318 AVPPLVTDIDISL-DDKFLYLSLWGIGEVRQYDI 350 (462)
T ss_dssp EECCCCCCEEECT-TSCEEEEEETTTTEEEEEEC
T ss_pred cCCCceeEEEECC-CCCEEEEEeCCCCEEEEEEe
Confidence 013346788999 66655 44456889999987
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.37 E-value=3.4e-05 Score=53.35 Aligned_cols=136 Identities=14% Similarity=0.093 Sum_probs=82.6
Q ss_pred CCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCC-------------------------------
Q 038702 6 TDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDD------------------------------- 54 (154)
Q Consensus 6 ~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~------------------------------- 54 (154)
.++.+.+.|..+.+. .....-.+....++++|+|+++++.+.+.
T Consensus 173 ~~~~vtvID~~t~~v-----~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~ 247 (595)
T 1fwx_A 173 YVNVFTAVDADKWEV-----AWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA 247 (595)
T ss_dssp EEEEEEEEETTTTEE-----EEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred cCceEEEEECCCCeE-----EEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccC
Confidence 355788888876552 22222222446678999999998888653
Q ss_pred -------eEEEEeccc--ccc-ceeEeecCCCCceEeEEEEEEcCCCcEEEEEc-cCCeEEEecCCCccce---------
Q 038702 55 -------TIGIWSGVN--FEN-TAMIHHNNQTGRWISSFRAIWGWDDSCIFIGN-MTRTVEVISPAQRRSV--------- 114 (154)
Q Consensus 55 -------~v~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~i~~~~~~~~~--------- 114 (154)
.|.+.|.++ ... ...+.... ....+.++|||++++.++ .+.+|.++|+.+.+..
T Consensus 248 Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~------~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~ 321 (595)
T 1fwx_A 248 GDYQELNGVKVVDGRKEASSLFTRYIPIAN------NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRS 321 (595)
T ss_dssp TCSEEETTEEEEECSGGGCCSSEEEEEEES------SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGG
T ss_pred CCeeEECcEEEEeCcccCCceeEEEEecCC------CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCccc
Confidence 244444444 111 11111111 111367899999876665 6778999999865310
Q ss_pred eEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 115 ATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
........+.-+..++|+| ++...++.-.|+.|..||+
T Consensus 322 ~v~~~v~vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi 359 (595)
T 1fwx_A 322 AVVAEPELGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNI 359 (595)
T ss_dssp GEEECCBCCSCEEEEEECT-TSEEEEEETTTTEEEEEEH
T ss_pred ceEEEcCCCCCcceEEECC-CCeEEEEEecCCcEEEEEh
Confidence 0111122233357889999 6766777789999999996
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.6e-05 Score=53.16 Aligned_cols=105 Identities=15% Similarity=0.023 Sum_probs=75.4
Q ss_pred CCCCEEEEeeCC-----CeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEc----------cCCeEEEe
Q 038702 42 PSGSSLATTSFD-----DTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGN----------MTRTVEVI 106 (154)
Q Consensus 42 ~~~~~l~~~~~d-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~d~~i~i~ 106 (154)
++++.++..... +.|.+.|..+.+....+..... . .++++|++++++.+. .++.|.++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~------P-gia~SpDgk~lyVan~~~~~~~~G~~~~~Vsvi 154 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFL------P-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVF 154 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSS------C-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCC------C-ceEECCCCCEEEEEeccccccccCCCCCEEEEE
Confidence 466766665542 6999999999888766654332 2 467899999888876 36789999
Q ss_pred cCCCccceeEEeCC--Cc---CCcceEEEecCCCccEEEEEcC--CCeEEEeeCC
Q 038702 107 SPAQRRSVATLQSP--YI---SAIPCRFHAHPHQVGTLAGATG--GGQVYVWTSD 154 (154)
Q Consensus 107 ~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~l~~~~~--d~~i~~wd~~ 154 (154)
|..+.+.+..+... .. ...+..+.++| +++++..+.. ++.|.+.|+.
T Consensus 155 D~~t~~vv~~I~v~g~~r~~~g~~P~~~~~sp-DGk~lyV~n~~~~~~VsVID~~ 208 (426)
T 3c75_H 155 DPVTFLPIADIELPDAPRFLVGTYQWMNALTP-DNKNLLFYQFSPAPAVGVVDLE 208 (426)
T ss_dssp CTTTCCEEEEEEETTCCCCCBSCCGGGSEECT-TSSEEEEEECSSSCEEEEEETT
T ss_pred ECCCCcEEEEEECCCccccccCCCcceEEEcC-CCCEEEEEecCCCCeEEEEECC
Confidence 99999988887632 10 12234678999 7777777653 5789999873
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=0.00013 Score=46.89 Aligned_cols=110 Identities=9% Similarity=-0.048 Sum_probs=68.2
Q ss_pred cccCCeEEEEEcCCCCEEEEe-eCCCeEEEEecc--cc-ccc--eeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeE
Q 038702 30 SHKRAVHSAYFSPSGSSLATT-SFDDTIGIWSGV--NF-ENT--AMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTV 103 (154)
Q Consensus 30 ~~~~~v~~~~~~~~~~~l~~~-~~d~~v~~~~~~--~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 103 (154)
.+......++|+|+++.++.+ +.++.|.+|++. ++ ... ..+........ ..-.+++.++|.++++...++.|
T Consensus 176 ~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~--~p~gi~~d~~G~lwva~~~~~~v 253 (326)
T 2ghs_A 176 ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKG--GMDGSVCDAEGHIWNARWGEGAV 253 (326)
T ss_dssp EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSS--EEEEEEECTTSCEEEEEETTTEE
T ss_pred CCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCC--CCCeeEECCCCCEEEEEeCCCEE
Confidence 344567789999999876554 557899999986 33 221 12221111111 12356788999877776667889
Q ss_pred EEecCCCccceeEEeCCCcCCcceEEEec-CCCcc-EEEEEcCC
Q 038702 104 EVISPAQRRSVATLQSPYISAIPCRFHAH-PHQVG-TLAGATGG 145 (154)
Q Consensus 104 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~l~~~~~d 145 (154)
..|+. +++.+..+..+.. .+..++|. | ++. ++++...+
T Consensus 254 ~~~d~-~g~~~~~i~~~~~--~~~~~af~g~-d~~~L~vt~~~~ 293 (326)
T 2ghs_A 254 DRYDT-DGNHIARYEVPGK--QTTCPAFIGP-DASRLLVTSARE 293 (326)
T ss_dssp EEECT-TCCEEEEEECSCS--BEEEEEEEST-TSCEEEEEEBCT
T ss_pred EEECC-CCCEEEEEECCCC--CcEEEEEecC-CCCEEEEEecCC
Confidence 99998 5676666664432 23678887 6 544 44555444
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00011 Score=45.22 Aligned_cols=131 Identities=11% Similarity=0.013 Sum_probs=80.8
Q ss_pred CcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEe-eCCCeEEEEeccccccceeEeecCCCCceEeEEEEE
Q 038702 8 GTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATT-SFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAI 86 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (154)
..|+.+|+.+++. .....-..........+.++.|+.. -.++.+.++|..+.+....+.... .+ ..+
T Consensus 43 S~v~~vD~~tgkv-----~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~-~G-----wgl- 110 (243)
T 3mbr_X 43 SSVRKVDLETGRI-----LQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPG-EG-----WAL- 110 (243)
T ss_dssp CEEEEEETTTCCE-----EEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSS-CC-----CEE-
T ss_pred ceEEEEECCCCCE-----EEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCC-Cc-----eEE-
Confidence 4899999988763 3333222233333233334555444 468999999999988877666543 22 122
Q ss_pred EcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcC---CcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 87 WGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYIS---AIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 87 ~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.+++..|+.+..++.|.++|..+.+.+.++.-...+ .....+.+. ++.+++..-.+..|.+.|+
T Consensus 111 -t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~--~G~lyanvw~s~~I~vIDp 177 (243)
T 3mbr_X 111 -TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV--NGELLANVWLTSRIARIDP 177 (243)
T ss_dssp -EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTTTEEEEECT
T ss_pred -eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe--CCEEEEEECCCCeEEEEEC
Confidence 246676766667889999999999888877642211 111234444 4566666656677777775
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.29 E-value=1.1e-05 Score=55.62 Aligned_cols=130 Identities=12% Similarity=0.093 Sum_probs=81.7
Q ss_pred CcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEee-CCCeEEEEeccccccc---------eeEeecCCCC
Q 038702 8 GTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNFENT---------AMIHHNNQTG 77 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~~~~~~~~~~~---------~~~~~~~~~~ 77 (154)
+.|.|.|.++.+.. .......-.....++.++|||+++++++ .+.+|.++|+.+.+.. ...... +.+
T Consensus 254 ~~V~VID~~~~~~~--~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG 330 (595)
T 1fwx_A 254 NGVKVVDGRKEASS--LFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-ELG 330 (595)
T ss_dssp TTEEEEECSGGGCC--SSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-BCC
T ss_pred CcEEEEeCcccCCc--eeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc-CCC
Confidence 35889998873210 1233444455678999999999877665 5889999999865311 111111 111
Q ss_pred ceEeEEEEEEcCCCcEEEEEccCCeEEEecCCC----------ccceeEEeCCCcCCc---ceEEEecCCCccEEEEEc
Q 038702 78 RWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQ----------RRSVATLQSPYISAI---PCRFHAHPHQVGTLAGAT 143 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~----------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~ 143 (154)
.....++|+|+|....+...|+.|.+||+.. .+.+..+..+..... ......+| ++++|++..
T Consensus 331 --~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~-DGk~l~~~N 406 (595)
T 1fwx_A 331 --LGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDA-TNDWLVCLS 406 (595)
T ss_dssp --SCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTC-CSSEEEEEE
T ss_pred --CCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCC-CCCEEEEcC
Confidence 1345778999995556677899999999876 445566655433211 11224567 778887775
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00023 Score=50.55 Aligned_cols=51 Identities=10% Similarity=0.102 Sum_probs=36.2
Q ss_pred CCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 100 TRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 100 d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
+|.|+.||+.+++.+-.+..+..... . .+.. .+.+++.++.|+.++.||.+
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~~~~~~-g--~~~t-agglvf~gt~dg~l~a~D~~ 504 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYVTIFNG-G--TLST-AGNLVFEGSADGRVIAYAAD 504 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCC-C--EEEE-TTTEEEEECTTSEEEEEETT
T ss_pred ceeEEEEECCCCCeEeEccCCCCccC-c--cceE-CCCEEEEECCCCcEEEEECC
Confidence 47899999999998877764332111 1 2222 45788889999999999963
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00022 Score=46.53 Aligned_cols=137 Identities=9% Similarity=-0.035 Sum_probs=80.7
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeec-c--------cCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEee
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLS-H--------KRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHH 72 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~-~--------~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~ 72 (154)
..++.++.|..+|..+++. .-.... . ...+.+. ...++..++.++.++.+..+|..+++..-....
T Consensus 57 ~~~~~~g~v~a~d~~tG~~----~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 57 YAADRAGLVKALNADDGKE----IWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp EEECTTSEEEEEETTTCCE----EEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EEEcCCCeEEEEEccCCce----eeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 4566788899999887653 111111 0 1222221 122456788888999999999998876543332
Q ss_pred cCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCC---cceEEEecCCCccEEEEEcCCCeEE
Q 038702 73 NNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISA---IPCRFHAHPHQVGTLAGATGGGQVY 149 (154)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~ 149 (154)
...... ... . .+..++.++.++.|..+|.++++.+-......... ........ +..++.+..++.+.
T Consensus 132 ~~~~~~-~p~----~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~---~~~v~~g~~~g~l~ 201 (376)
T 3q7m_A 132 AGEALS-RPV----V--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA---FGAAVVGGDNGRVS 201 (376)
T ss_dssp SSCCCS-CCE----E--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE---TTEEEECCTTTEEE
T ss_pred CCceEc-CCE----E--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE---CCEEEEEcCCCEEE
Confidence 211100 001 1 24577778889999999999998877665432110 00111222 24677778888888
Q ss_pred EeeC
Q 038702 150 VWTS 153 (154)
Q Consensus 150 ~wd~ 153 (154)
.+|.
T Consensus 202 ~~d~ 205 (376)
T 3q7m_A 202 AVLM 205 (376)
T ss_dssp EEET
T ss_pred EEEC
Confidence 8886
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.26 E-value=0.0002 Score=51.32 Aligned_cols=134 Identities=11% Similarity=0.058 Sum_probs=73.8
Q ss_pred CcEEEEEccCC-CCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCC-----CeEEEEeccccccc--eeEeecCCCCce
Q 038702 8 GTACIWDLRSM-ATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFD-----DTIGIWSGVNFENT--AMIHHNNQTGRW 79 (154)
Q Consensus 8 ~~v~vw~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~v~~~~~~~~~~~--~~~~~~~~~~~~ 79 (154)
.+|+++|+.++ +. ..... ......+.|+|+++.|+....+ ..|..+++.+.... .++.... ...
T Consensus 201 ~~l~v~dl~~g~~~----l~~~~--~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~--~~~ 272 (751)
T 2xe4_A 201 YTIEFKRISDPSQT----IADKV--SGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHN--PLF 272 (751)
T ss_dssp EEEEEEETTCTTCC----CCCCE--EEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCC--TTC
T ss_pred EEEEEEECCCCCEe----CCccc--cCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCC--Cce
Confidence 35888998876 42 11111 1113468899999888777665 35778888765432 2222111 111
Q ss_pred EeEEEEEEcCCCcEEEEEcc---CCeEEEecCCCcc-ce--eEEeCCCcCCcceEEEecCCCccEEEEEcCC----CeEE
Q 038702 80 ISSFRAIWGWDDSCIFIGNM---TRTVEVISPAQRR-SV--ATLQSPYISAIPCRFHAHPHQVGTLAGATGG----GQVY 149 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~---d~~i~i~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----~~i~ 149 (154)
...+.|+|++++|+..+. ...|+++|+.++. .. ..+........ ....|+. .+.+++....+ ..|.
T Consensus 273 --~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~-~s~~~~~-g~~l~~~t~~~~a~~~~L~ 348 (751)
T 2xe4_A 273 --SAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVR-YDVQMHG-TSHLVILTNEGGAVNHKLL 348 (751)
T ss_dssp --EEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCC-EEEEEET-TTEEEEEECTTTCTTCEEE
T ss_pred --EEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCce-EEEeeee-CCEEEEEeCCCCCCCcEEE
Confidence 235689999998877653 3468888988753 22 33322222221 3344443 33444554443 3566
Q ss_pred EeeC
Q 038702 150 VWTS 153 (154)
Q Consensus 150 ~wd~ 153 (154)
.+|+
T Consensus 349 ~~d~ 352 (751)
T 2xe4_A 349 IAPR 352 (751)
T ss_dssp EEET
T ss_pred EEcC
Confidence 5554
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.26 E-value=5.5e-05 Score=54.14 Aligned_cols=110 Identities=14% Similarity=0.043 Sum_probs=69.0
Q ss_pred CeEEEEEc-CCCCEEEEeeC-C----CeEEEEecccc-cccee-EeecCCCCceEeEEEEEEcCCCcEEEEEccC-----
Q 038702 34 AVHSAYFS-PSGSSLATTSF-D----DTIGIWSGVNF-ENTAM-IHHNNQTGRWISSFRAIWGWDDSCIFIGNMT----- 100 (154)
Q Consensus 34 ~v~~~~~~-~~~~~l~~~~~-d----~~v~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----- 100 (154)
.+...+|| |+|++++.+.. + ..|+++|+.++ +.... +... ...+.|+||++.|+....+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~--------~~~~~WspDg~~l~y~~~d~~~~~ 246 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGT--------NGEIVWGPDHTSLFYVTKDETLRE 246 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEE--------CSCCEECSSTTEEEEEEECTTCCE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCc--------eeeEEEecCCCEEEEEEECCCCCC
Confidence 57789999 99998875433 2 35999999887 53211 1110 1145799999888777665
Q ss_pred CeEEEecCCCccce--eEEeCCCcCCcceEEEecCCCccEEEEEc---CCCeEEEeeC
Q 038702 101 RTVEVISPAQRRSV--ATLQSPYISAIPCRFHAHPHQVGTLAGAT---GGGQVYVWTS 153 (154)
Q Consensus 101 ~~i~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~d~~i~~wd~ 153 (154)
..|..+++.+++.. ..+...... ....+.|+| ++++|+..+ ....|+++|+
T Consensus 247 ~~v~~~~lgt~~~~~~lv~~~~~~~-~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~ 302 (751)
T 2xe4_A 247 NKVWRHVMGKLQSEDVCLYEEHNPL-FSAFMYKAA-DTNTLCIGSQSPETAEVHLLDL 302 (751)
T ss_dssp EEEEEEETTSCGGGCEEEEECCCTT-CEEEEEECT-TSSEEEEEEECSSCEEEEEEES
T ss_pred CEEEEEECCCCchhcEEEEecCCCc-eEEEEEECC-CCCEEEEEecCCCCceEEEEEC
Confidence 35788888776432 233322222 235678999 777766544 2345777775
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00013 Score=47.18 Aligned_cols=120 Identities=8% Similarity=-0.096 Sum_probs=73.8
Q ss_pred cccCCeEEEEEcCCCCEEEEeeC-----CCeEEEEeccccccceeEeecC---CCCceEeEEEEEEcCCC-cEEEEEc--
Q 038702 30 SHKRAVHSAYFSPSGSSLATTSF-----DDTIGIWSGVNFENTAMIHHNN---QTGRWISSFRAIWGWDD-SCIFIGN-- 98 (154)
Q Consensus 30 ~~~~~v~~~~~~~~~~~l~~~~~-----d~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~l~~~~-- 98 (154)
.+...+..++++++++++++-.. +..|.+||+.+++....+.... ....... .+++++++ ..+++..
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~--~v~vd~~~g~~yvtd~~~ 141 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVN--DLAVDLIHNFVYISDPAP 141 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCC--EEEEETTTTEEEEEECCS
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccc--eEEEecCCCEEEEEcCcc
Confidence 35578999999999887666544 5789999998776544333211 1111112 45678754 4445555
Q ss_pred -cCCeEEEecCCCccceeEEeCCCc---------------------------CCcceEEEecCCCccEEEEEcCCC-eEE
Q 038702 99 -MTRTVEVISPAQRRSVATLQSPYI---------------------------SAIPCRFHAHPHQVGTLAGATGGG-QVY 149 (154)
Q Consensus 99 -~d~~i~i~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~l~~~~~d~-~i~ 149 (154)
.++.|.+||+.+++....+.++.. ......++++| +++.|..+..++ .+.
T Consensus 142 ~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~-dg~~ly~~~~~~~~l~ 220 (343)
T 2qe8_A 142 DDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA-ENEWLYLSPMHSTSMY 220 (343)
T ss_dssp GGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECT-TSCEEEEEESSCSEEE
T ss_pred CCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEecc-CCCEEEEEeCCCCeEE
Confidence 678999999988776555432100 01235688999 677666665544 554
Q ss_pred Eee
Q 038702 150 VWT 152 (154)
Q Consensus 150 ~wd 152 (154)
.++
T Consensus 221 ~~~ 223 (343)
T 2qe8_A 221 RIK 223 (343)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00042 Score=46.46 Aligned_cols=132 Identities=11% Similarity=-0.032 Sum_probs=76.7
Q ss_pred CcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCC-C----eEEEEeccccccc--eeEeecCCCCceE
Q 038702 8 GTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFD-D----TIGIWSGVNFENT--AMIHHNNQTGRWI 80 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~----~v~~~~~~~~~~~--~~~~~~~~~~~~~ 80 (154)
+.|+.+|+.... ...+.........++|+++++.|+.+... + .+...+.. .... ..+... ..
T Consensus 159 ~~I~~id~~~~~-----v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~~~~~~l~~~-~~---- 227 (430)
T 3tc9_A 159 HPTRLIDFEKEY-----VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGFKVITELTKG-QN---- 227 (430)
T ss_dssp EEEEEEETTTTE-----EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTSCSEEEEEEC-SS----
T ss_pred CcEEEEECCCCE-----EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-CceeeeeeeccC-CC----
Confidence 556667765433 23333445568899999999966665542 1 23333332 2221 111111 11
Q ss_pred eEEEEEEcC-CCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCcc-EEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGW-DDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVG-TLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~~wd~ 153 (154)
...++++| ++.++++-..++.|..++...+....... ......+..++++| +++ ++++-...+.|..++.
T Consensus 228 -p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~-~~~~~~P~gia~~p-dG~~lyv~d~~~~~I~~~~~ 299 (430)
T 3tc9_A 228 -CNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFT-IQDSGWEFHIQFHP-SGNYAYIVVVNQHYILRSDY 299 (430)
T ss_dssp -CCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEE-CSSSSCCEEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred -ceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEE-cCCCCcceeEEEcC-CCCEEEEEECCCCEEEEEeC
Confidence 11356788 67777776677899999987665422222 11223346799999 666 5666667888888764
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=5.4e-05 Score=49.66 Aligned_cols=91 Identities=13% Similarity=-0.079 Sum_probs=66.6
Q ss_pred eEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEc----------cCCeEEEecCCCccceeEEeCCCc--
Q 038702 55 TIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGN----------MTRTVEVISPAQRRSVATLQSPYI-- 122 (154)
Q Consensus 55 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~d~~i~i~~~~~~~~~~~~~~~~~-- 122 (154)
+|.+.|..+.+....+..... . .+.++|++++++.+. .++.|.+||+.+++.+.++..+..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~------P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~ 119 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFL------S-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR 119 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTT------C-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS
T ss_pred eEEEEECCCCeEEEEEeCCCC------C-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccc
Confidence 788999999888766654432 1 457899999888886 468899999999999999864311
Q ss_pred ---CCcceEEEecCCCccEEEEEcC--CCeEEE--eeC
Q 038702 123 ---SAIPCRFHAHPHQVGTLAGATG--GGQVYV--WTS 153 (154)
Q Consensus 123 ---~~~~~~~~~~~~~~~~l~~~~~--d~~i~~--wd~ 153 (154)
...+..++++| +++++..+.. +..+.+ +|+
T Consensus 120 ~~~g~~P~~ia~Sp-DGk~lyVan~~~~~~v~V~~iD~ 156 (368)
T 1mda_H 120 FSVGPRVHIIGNCA-SSACLLFFLFGSSAAAGLSVPGA 156 (368)
T ss_dssp CCBSCCTTSEEECT-TSSCEEEEECSSSCEEEEEETTT
T ss_pred cccCCCcceEEEcC-CCCEEEEEccCCCCeEEEEEEch
Confidence 11234688999 7777777664 457888 875
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00046 Score=46.30 Aligned_cols=134 Identities=8% Similarity=-0.020 Sum_probs=73.2
Q ss_pred CcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCC---Ce-EEEEeccccccc-eeEeecCCCCceEeE
Q 038702 8 GTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFD---DT-IGIWSGVNFENT-AMIHHNNQTGRWISS 82 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~-v~~~~~~~~~~~-~~~~~~~~~~~~~~~ 82 (154)
+.|+.++..++. ...+.........++++++++++++-... .. +...+....... ....... ..
T Consensus 162 ~~I~~id~~~g~-----v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~------~P 230 (433)
T 4hw6_A 162 DAFRHVDFVNQY-----VDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCNAR------GA 230 (433)
T ss_dssp SCEEEEETTTTE-----EEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEECS------SB
T ss_pred CCEEEEECCCCE-----EEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccccC------CC
Confidence 455556654433 22333444568899999999944443321 12 333332221110 1111111 11
Q ss_pred EEEEEcC-CCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCcc-EEEEEcCCCeEEEeeC
Q 038702 83 FRAIWGW-DDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVG-TLAGATGGGQVYVWTS 153 (154)
Q Consensus 83 ~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~~wd~ 153 (154)
..++++| ++.++++-..++.|+.++..++.....+...........++++| +++ ++++-...+.|..++.
T Consensus 231 ~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dp-dG~~LYvad~~~~~I~~~~~ 302 (433)
T 4hw6_A 231 KTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHP-TGDWAYIIYNGKHCIYRVDY 302 (433)
T ss_dssp CCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECT-TSSEEEEEETTTTEEEEEEB
T ss_pred CEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeC-CCCEEEEEeCCCCEEEEEeC
Confidence 1346788 66666666677889999988776533332222222334689999 666 6666667788988764
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00056 Score=43.79 Aligned_cols=113 Identities=10% Similarity=-0.062 Sum_probs=69.8
Q ss_pred CCeEEEEEcCCCCEEEEe-eCCCeEEEEecccccc--ceeEeecCCCCceEeEEEEEEcCCCcEEEEEcc----------
Q 038702 33 RAVHSAYFSPSGSSLATT-SFDDTIGIWSGVNFEN--TAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNM---------- 99 (154)
Q Consensus 33 ~~v~~~~~~~~~~~l~~~-~~d~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------- 99 (154)
.....++++|+++.|+.+ ...+.|..+++..... ...+.. ..+ .-.++..++|.++++...
T Consensus 185 ~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g----P~gi~~d~~G~l~va~~~~~~~~~~~~~ 258 (322)
T 2fp8_A 185 HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN----PGNIKRNADGHFWVSSSEELDGNMHGRV 258 (322)
T ss_dssp SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS----EEEEEECTTSCEEEEEEEETTSSTTSCE
T ss_pred ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC----CCCeEECCCCCEEEEecCcccccccCCC
Confidence 345678999999866555 5678899999875321 112211 111 224578899987766544
Q ss_pred CCeEEEecCCCccceeEEeCCCc--CCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 100 TRTVEVISPAQRRSVATLQSPYI--SAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 100 d~~i~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.+.|..+|.. ++.+..+..... ......+++. ++.++++....+.|..++++
T Consensus 259 ~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 259 DPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQEH--DGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp EEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEEE--TTEEEEECSSCSEEEEEEC-
T ss_pred ccEEEEECCC-CCEEEEEECCCCCccccceEEEEe--CCEEEEeecCCCceEEEecc
Confidence 4678888874 676666654321 1122344443 56777777788899988863
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0006 Score=42.40 Aligned_cols=138 Identities=9% Similarity=-0.002 Sum_probs=80.0
Q ss_pred cCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCCCEEE-EeeCCCeEEEEeccccccceeEeecCCCCceEeE
Q 038702 5 STDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLA-TTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISS 82 (154)
Q Consensus 5 ~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (154)
..++.|..+++.... ..... ........+++++++..++ +-...+.|.++++............. . ..
T Consensus 55 ~~~~~I~~~~~~g~~-----~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~--~---~P 124 (267)
T 1npe_A 55 ISEPSIGRASLHGGE-----PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGL--V---NP 124 (267)
T ss_dssp TTTTEEEEEESSSCC-----CEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC--S---SE
T ss_pred CCCCEEEEEecCCCC-----cEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCC--C---Cc
Confidence 345667777765432 22222 2224678999999755544 44557889999987543322221110 1 22
Q ss_pred EEEEEcCCCcEEEEEcc---CCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 83 FRAIWGWDDSCIFIGNM---TRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 83 ~~~~~~~~~~~l~~~~~---d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
..++++|++..|..+.. .+.|..+++.. +....+.. .....+..++++|..+.++++-...+.|..+|++
T Consensus 125 ~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~-~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~ 197 (267)
T 1npe_A 125 RGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQ-DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPA 197 (267)
T ss_dssp EEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEEC-TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred cEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEE-CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecC
Confidence 35678986555544443 36787777653 33333321 1223457889998445566777778899998864
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00067 Score=47.27 Aligned_cols=83 Identities=6% Similarity=-0.068 Sum_probs=49.7
Q ss_pred CCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEec
Q 038702 53 DDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAH 132 (154)
Q Consensus 53 d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (154)
+|.+.-||+.+++..-......... ...+ ...+.+++.++.|+.++.||.++++.+-.++.... ....-+.+.
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~~~--~g~~----~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g-~~a~P~~y~ 537 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLPLW--AGVL----ATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSG-IVSPPITWE 537 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCC--SCCE----EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC-CCSCCEEEE
T ss_pred cceEEEEECCCCCEEEEecCCCCCc--ccce----EeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCC-cccCceEEE
Confidence 5778888888877654333221110 0111 11466788899999999999999999988875432 222234444
Q ss_pred CCCccEEEEE
Q 038702 133 PHQVGTLAGA 142 (154)
Q Consensus 133 ~~~~~~l~~~ 142 (154)
.....++++.
T Consensus 538 ~~G~qYv~~~ 547 (582)
T 1flg_A 538 QDGEQYLGVT 547 (582)
T ss_dssp ETTEEEEEEE
T ss_pred ECCEEEEEEE
Confidence 4233455443
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00096 Score=46.39 Aligned_cols=62 Identities=3% Similarity=-0.026 Sum_probs=41.4
Q ss_pred CCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCC
Q 038702 53 DDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSP 120 (154)
Q Consensus 53 d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 120 (154)
++.+..+|..+++..-......... ... ....+..++.++.|+.|+.+|.++++.+..+...
T Consensus 443 ~g~l~a~D~~tG~~~W~~~~~~~~~--~~~----~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~ 504 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWTKWEKFAAW--GGT----LYTKGGLVWYATLDGYLKALDNKDGKELWNFKMP 504 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEESSCCC--SBC----EEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CCeEEEEECCCCCEEEEecCCCCcc--cee----EEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCC
Confidence 4778888888777654443322110 011 1124567777899999999999999999888744
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00041 Score=44.23 Aligned_cols=132 Identities=16% Similarity=0.089 Sum_probs=73.8
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEe
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWIS 81 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (154)
..++.++.+..+|.. ++. ..........+.++...+++. +..++.++.+..+|.. ++.......... .+.
T Consensus 111 ~v~t~~~~l~~~d~~-g~~----~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~---~~~ 180 (330)
T 3hxj_A 111 YVTSMDGHLYAINTD-GTE----KWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDA---ITS 180 (330)
T ss_dssp EEECTTSEEEEECTT-SCE----EEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSC---CCS
T ss_pred EEEecCCEEEEEcCC-CCE----EEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCC---cee
Confidence 356677888888876 432 222223344556667776776 5556778889999987 443332222111 111
Q ss_pred EEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 82 SFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.+...+++.+++. + +.+..+| .+++.+......... ...+...+ ++ .+..++.++.+..+|.
T Consensus 181 --~~~~d~~g~l~v~-t--~~l~~~d-~~g~~~~~~~~~~~~--~~~~~~~~-~g-~l~v~t~~~gl~~~~~ 242 (330)
T 3hxj_A 181 --AASIGKDGTIYFG-S--DKVYAIN-PDGTEKWNFYAGYWT--VTRPAISE-DG-TIYVTSLDGHLYAINP 242 (330)
T ss_dssp --CCEECTTCCEEEE-S--SSEEEEC-TTSCEEEEECCSSCC--CSCCEECT-TS-CEEEEETTTEEEEECT
T ss_pred --eeEEcCCCEEEEE-e--CEEEEEC-CCCcEEEEEccCCcc--eeceEECC-CC-eEEEEcCCCeEEEECC
Confidence 2234556665544 4 7788888 666666555432222 23455555 43 4445566677776664
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00035 Score=49.51 Aligned_cols=146 Identities=9% Similarity=-0.017 Sum_probs=84.8
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecc-c----CCeEEEEEcCCCCEEEEeeC------CCeEEEEeccccccceeE
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSH-K----RAVHSAYFSPSGSSLATTSF------DDTIGIWSGVNFENTAMI 70 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~-~----~~v~~~~~~~~~~~l~~~~~------d~~v~~~~~~~~~~~~~~ 70 (154)
+.++.|+.|..+|..+++. .-+...+ . ..+.+--.. .+..++.++. ++.|..+|.++++..-.+
T Consensus 132 ~v~~~dg~l~alD~~tG~~----~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~ 206 (677)
T 1kb0_A 132 YVGAWDGRLIALDAATGKE----VWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW 206 (677)
T ss_dssp EEECTTSEEEEEETTTCCE----EEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred EEEcCCCEEEEEECCCCCE----EeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence 4567889999999988764 2222221 1 111110001 2345555543 689999999988776444
Q ss_pred eecCCCC--------------------ce-------EeEEEEEEcCCCcEEEEEccCC-------------------eEE
Q 038702 71 HHNNQTG--------------------RW-------ISSFRAIWGWDDSCIFIGNMTR-------------------TVE 104 (154)
Q Consensus 71 ~~~~~~~--------------------~~-------~~~~~~~~~~~~~~l~~~~~d~-------------------~i~ 104 (154)
....... .. .....++++|++..++.+..++ .|.
T Consensus 207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~ 286 (677)
T 1kb0_A 207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIV 286 (677)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEE
Confidence 3211110 00 0001346788888888777654 599
Q ss_pred EecCCCccceeEEeCCCc-------CCcceEEEecCCCc---cEEEEEcCCCeEEEeeC
Q 038702 105 VISPAQRRSVATLQSPYI-------SAIPCRFHAHPHQV---GTLAGATGGGQVYVWTS 153 (154)
Q Consensus 105 i~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~---~~l~~~~~d~~i~~wd~ 153 (154)
.+|..+++.+-.+..... ......+.... ++ ..++.++.+|.++++|.
T Consensus 287 AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~-dG~~~~~l~~~~~~G~l~~lD~ 344 (677)
T 1kb0_A 287 ALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKI-AGKPRKVILHAPKNGFFFVLDR 344 (677)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEE-TTEEEEEEEECCTTSEEEEEET
T ss_pred EEECCCCCEEEEEecCCCcccccccCCCcEEEeccc-CCcEeeEEEEECCCCEEEEEEC
Confidence 999999998877664211 11111122222 34 67888999999999986
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0017 Score=41.51 Aligned_cols=116 Identities=7% Similarity=0.007 Sum_probs=66.3
Q ss_pred CCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcC-CCcEEEEEcc-----------
Q 038702 33 RAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGW-DDSCIFIGNM----------- 99 (154)
Q Consensus 33 ~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~----------- 99 (154)
..+..+++.+ ++++++ +...+.+..+|..+............ ......-.+++.+ +|.++++-..
T Consensus 80 ~~p~gi~~~~~~g~l~v-~d~~~~i~~~d~~~g~~~~~~~~~~~-~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~ 157 (322)
T 2fp8_A 80 GRTYDISYNLQNNQLYI-VDCYYHLSVVGSEGGHATQLATSVDG-VPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQI 157 (322)
T ss_dssp CCEEEEEEETTTTEEEE-EETTTEEEEECTTCEECEEEESEETT-EECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHH
T ss_pred CCCceEEEcCCCCcEEE-EECCCCEEEEeCCCCEEEEecccCCC-CcccccceEEEecCCCEEEEECCccccccccccee
Confidence 3578999998 665444 44445588888765443222211110 0001123567889 8887766432
Q ss_pred ------CCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCcc-EEEEEcCCCeEEEeeCC
Q 038702 100 ------TRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVG-TLAGATGGGQVYVWTSD 154 (154)
Q Consensus 100 ------d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~~wd~~ 154 (154)
++.|..+|..+++....... ...+..++++| +++ ++++-...+.|..|+++
T Consensus 158 ~~~~~~~g~v~~~d~~~~~~~~~~~~---~~~p~gia~~~-dg~~lyv~d~~~~~I~~~~~~ 215 (322)
T 2fp8_A 158 MDTSDKTGRLIKYDPSTKETTLLLKE---LHVPGGAEVSA-DSSFVLVAEFLSHQIVKYWLE 215 (322)
T ss_dssp HHHTCCCEEEEEEETTTTEEEEEEEE---ESCCCEEEECT-TSSEEEEEEGGGTEEEEEESS
T ss_pred hcccCCCceEEEEeCCCCEEEEeccC---CccCcceEECC-CCCEEEEEeCCCCeEEEEECC
Confidence 36788888766653322221 12235688998 666 45555677889888863
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.001 Score=42.33 Aligned_cols=132 Identities=10% Similarity=0.043 Sum_probs=72.4
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEe
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWIS 81 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (154)
..++.++.+..+|.. ++. ..........+.++...+++..++.. +.+..+| .+++......... ..+.
T Consensus 151 ~vgt~~~~l~~~d~~-g~~----~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~---~~~~ 218 (330)
T 3hxj_A 151 YVGSNDNYLYAINPD-GTE----KWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGY---WTVT 218 (330)
T ss_dssp EEECTTSEEEEECTT-SCE----EEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCSS---CCCS
T ss_pred EEEcCCCEEEEECCC-CCE----eEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCC---ccee
Confidence 346667788888876 432 22222334456677777777755554 7788888 5444332222111 1111
Q ss_pred EEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 82 SFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.+...+++. +..++.++.+..++. +++.+..+....... ..+...+ + ..|..++.+|.|..+|.
T Consensus 219 --~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~--~~~~~~~-~-g~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 219 --RPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIE--SSPVIGN-T-DTIYFGSYDGHLYAINP 282 (330)
T ss_dssp --CCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSCCC--SCCEECT-T-SCEEEECTTCEEEEECT
T ss_pred --ceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCcc--ccceEcC-C-CeEEEecCCCCEEEECC
Confidence 234466665 445566777888874 555555554322211 2234443 3 45666777888888774
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0011 Score=46.70 Aligned_cols=113 Identities=8% Similarity=-0.007 Sum_probs=66.9
Q ss_pred EEEEcC-CCCEEEEeeCCC-----------eEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEcc-CCeE
Q 038702 37 SAYFSP-SGSSLATTSFDD-----------TIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNM-TRTV 103 (154)
Q Consensus 37 ~~~~~~-~~~~l~~~~~d~-----------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i 103 (154)
..++.+ +++.++.|+.+. .+.+||..+.+-............ .+...++.+++++++.|+. +..+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~--~~~~~~~~~~g~lyv~GG~~~~~v 267 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDM--FCPGISMDGNGQIVVTGGNDAKKT 267 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCC--SSCEEEECTTSCEEEECSSSTTCE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCC--ccccccCCCCCCEEEeCCCCCCce
Confidence 566777 788888876542 588899887654332221111111 1113456788999999884 4589
Q ss_pred EEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEc-CC-----CeEEEeeC
Q 038702 104 EVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT-GG-----GQVYVWTS 153 (154)
Q Consensus 104 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d-----~~i~~wd~ 153 (154)
.+||..+.+-...-..+. .......+..+ ++.+++.|+ .+ ..+.+||+
T Consensus 268 ~~yd~~t~~W~~~~~~~~-~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~ 321 (656)
T 1k3i_A 268 SLYDSSSDSWIPGPDMQV-ARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSP 321 (656)
T ss_dssp EEEEGGGTEEEECCCCSS-CCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEET
T ss_pred EEecCcCCceeECCCCCc-cccccceEEec-CCeEEEEeCcccCCcccccceEeCC
Confidence 999988654322211111 11113445555 678888888 44 46888886
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0022 Score=39.84 Aligned_cols=140 Identities=15% Similarity=0.039 Sum_probs=78.6
Q ss_pred CcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCCCEEE-EeeCCCeEEEEeccccccceeEeecCCCCceEeEEEE
Q 038702 8 GTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLA-TTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRA 85 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (154)
+.|+.+++.............. .....+..++|++++..|+ +-..++.|..+++............. . ....+
T Consensus 10 ~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~--~---~p~~i 84 (267)
T 1npe_A 10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDL--G---SPEGI 84 (267)
T ss_dssp EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTC--C---CEEEE
T ss_pred CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCC--C---CccEE
Confidence 4688888865432110011112 1234578999999665555 44557899999987654433221110 1 22356
Q ss_pred EEcCCCc-EEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcC--CCeEEEeeCC
Q 038702 86 IWGWDDS-CIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATG--GGQVYVWTSD 154 (154)
Q Consensus 86 ~~~~~~~-~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--d~~i~~wd~~ 154 (154)
++++++. .+++-...+.|.++++.... ...+.. .....+..++++|..+.++++... .+.|..++++
T Consensus 85 a~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~~~~~-~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d 154 (267)
T 1npe_A 85 ALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRVLFD-TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD 154 (267)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEC-SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT
T ss_pred EEEecCCeEEEEECCCCEEEEEEcCCCC-EEEEEE-CCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC
Confidence 7888654 44555567789999886433 223321 122334678999844555555443 4678777653
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0024 Score=45.28 Aligned_cols=62 Identities=8% Similarity=0.114 Sum_probs=43.8
Q ss_pred CCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCC
Q 038702 53 DDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSP 120 (154)
Q Consensus 53 d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 120 (154)
+|.|..||+.+++..-......... .. .....+.+++.++.|+.++.||.++++.+..+...
T Consensus 437 ~g~l~A~D~~tG~~~W~~~~~~~~~--~~----~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 437 SGALLAWDPVKQKAAWKVPYPTHWN--GG----TLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCC--CC----EEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred cceEEEEeCCCCcEEEEccCCCCCc--Cc----eeEeCCCEEEEECCcccchhhhhhcChhheEecCC
Confidence 4789999998887664443322110 01 12335778888999999999999999999888754
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0074 Score=42.32 Aligned_cols=62 Identities=6% Similarity=0.013 Sum_probs=39.9
Q ss_pred CCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCC
Q 038702 53 DDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSP 120 (154)
Q Consensus 53 d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 120 (154)
.|.+.-||+.+++..-......... ... ....+.+++.++.|+.++.||.++++.+-.++..
T Consensus 452 ~G~l~A~D~~tG~~~W~~~~~~~~~--~g~----~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~ 513 (599)
T 1w6s_A 452 LGQIKAYNAITGDYKWEKMERFAVW--GGT----MATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIP 513 (599)
T ss_dssp CEEEEEECTTTCCEEEEEEESSCCC--SBC----EEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred cCeEEEEECCCCCEEeEecCCCCcc--Ccc----eEecCCEEEEECCCCeEEEEECCCCCEEEEeeCC
Confidence 4667777777766544333221100 000 1124667778999999999999999999888743
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0048 Score=39.86 Aligned_cols=118 Identities=3% Similarity=-0.053 Sum_probs=74.8
Q ss_pred CeEEEEEcCCCCEEEEee-CCCeEEEEeccccccceeEeecCC---CCceEeEEEEEE---cCCCcEEEEEcc-------
Q 038702 34 AVHSAYFSPSGSSLATTS-FDDTIGIWSGVNFENTAMIHHNNQ---TGRWISSFRAIW---GWDDSCIFIGNM------- 99 (154)
Q Consensus 34 ~v~~~~~~~~~~~l~~~~-~d~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---~~~~~~l~~~~~------- 99 (154)
.--+++|++....|..++ ..++|..|+......... ..... .........+.| .|+++++++...
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence 345789988555555555 799999999875433322 11110 112234457788 688877775432
Q ss_pred ------CCeEEEecCC---CccceeEEeCC--C---------cCCcceEEEecCCCccEEEEEcCC-CeEEEeeC
Q 038702 100 ------TRTVEVISPA---QRRSVATLQSP--Y---------ISAIPCRFHAHPHQVGTLAGATGG-GQVYVWTS 153 (154)
Q Consensus 100 ------d~~i~i~~~~---~~~~~~~~~~~--~---------~~~~~~~~~~~~~~~~~l~~~~~d-~~i~~wd~ 153 (154)
+..|..||+. +++.+....-. . ....+..++..+ +++..++++.. +.|...+.
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~rV~p 166 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIARVSA 166 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEEECT
T ss_pred ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEEEeC
Confidence 5779999999 78776555421 0 112357889998 78888888877 76665554
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0066 Score=40.09 Aligned_cols=114 Identities=7% Similarity=-0.141 Sum_probs=66.0
Q ss_pred CeEEEEEcCCCC-EEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEc-cC-CeEEEecCCC
Q 038702 34 AVHSAYFSPSGS-SLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGN-MT-RTVEVISPAQ 110 (154)
Q Consensus 34 ~v~~~~~~~~~~-~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d-~~i~i~~~~~ 110 (154)
....+++.+.+. ++++-...+.|.+.++.............. ....+++.|.+..|+... .. +.|..+++..
T Consensus 160 ~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~-----~P~giavdp~~g~ly~td~~~~~~I~r~~~dG 234 (386)
T 3v65_B 160 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLE-----KPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 234 (386)
T ss_dssp CCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCS-----CEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred CccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCC-----CCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC
Confidence 446788887544 445555577888888765443333221111 223556787665554443 33 6777777654
Q ss_pred ccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 111 RRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.. ...+.. .....+..++++|..+.++++-+..+.|..+|++
T Consensus 235 ~~-~~~~~~-~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d 276 (386)
T 3v65_B 235 SG-RRIIAD-THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 276 (386)
T ss_dssp CS-CEEEEC-SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTT
T ss_pred CC-cEEEEE-CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 33 233321 2223356789987555666666777888888764
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0067 Score=39.23 Aligned_cols=143 Identities=10% Similarity=0.075 Sum_probs=86.5
Q ss_pred cCCCcEEEEEccCCCCCCCCCcee-ecc-------cCCeEEEEE---cCCCCEEEEee-------------CCCeEEEEe
Q 038702 5 STDGTACIWDLRSMATDKPEPTKV-LSH-------KRAVHSAYF---SPSGSSLATTS-------------FDDTIGIWS 60 (154)
Q Consensus 5 ~~d~~v~vw~~~~~~~~~~~~~~~-~~~-------~~~v~~~~~---~~~~~~l~~~~-------------~d~~v~~~~ 60 (154)
-..++|..|+...+.. ..+ ... ...+..|.| .|+++++++.. .+..+..+|
T Consensus 32 l~~g~V~~~~~~~~~~-----~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~D 106 (334)
T 2p9w_A 32 LYKGRIEVYNPKTQSH-----FNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFN 106 (334)
T ss_dssp TTTTEEEEECTTTCCE-----EEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEE
T ss_pred ccCCEEEEEcCCCCeE-----EEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEc
Confidence 3678888898864331 111 111 113579999 68887777543 267799999
Q ss_pred cc---ccccceeEeecC-CCC-------ceEeEEEEEEcCCCcEEEEEccC-CeEEEecCCCccceeEEeCCC----cCC
Q 038702 61 GV---NFENTAMIHHNN-QTG-------RWISSFRAIWGWDDSCIFIGNMT-RTVEVISPAQRRSVATLQSPY----ISA 124 (154)
Q Consensus 61 ~~---~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~l~~~~~d-~~i~i~~~~~~~~~~~~~~~~----~~~ 124 (154)
+. +.+......-.. ..+ .....-.++..++|+..++++.. +.|...+.... .+..+.... ...
T Consensus 107 l~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~~~~~~~~~~~~~ 185 (334)
T 2p9w_A 107 LPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVSTFAWESGNGGQRP 185 (334)
T ss_dssp SSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEEEEECCCCSSSCC
T ss_pred CCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEeeeeecCCCccccc
Confidence 98 665543332110 000 11223467889999999988888 88777776533 233222111 111
Q ss_pred cceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 125 IPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 125 ~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
-...++++| ++..|+.....|.+..+|+.
T Consensus 186 G~nGIv~~p-dg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 186 GYSGITFDP-HSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp SCSEEEEET-TTTEEEEESSSSSEEEEECS
T ss_pred CcceEEEeC-CCCEEEEEcCCCeEEEEcCC
Confidence 135789999 67777766669999988863
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0073 Score=39.39 Aligned_cols=139 Identities=7% Similarity=0.020 Sum_probs=77.0
Q ss_pred CCcEEEEEccCCCCCCCCCceeec-------cc-CCeEEEEE--cCC-CC-EEEEeeCCCeEEEEeccccc---c-ceeE
Q 038702 7 DGTACIWDLRSMATDKPEPTKVLS-------HK-RAVHSAYF--SPS-GS-SLATTSFDDTIGIWSGVNFE---N-TAMI 70 (154)
Q Consensus 7 d~~v~vw~~~~~~~~~~~~~~~~~-------~~-~~v~~~~~--~~~-~~-~l~~~~~d~~v~~~~~~~~~---~-~~~~ 70 (154)
+++|.+|++..... .....+ .. ..+..+++ +|. +. +++....+|.+..|++.... . ....
T Consensus 98 ~n~l~vf~iDp~~~----~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lV 173 (355)
T 3amr_A 98 KNTIEIYAIDGKNG----TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKV 173 (355)
T ss_dssp CCEEEEEEECTTTC----CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEE
T ss_pred CCeEEEEEECCCCC----ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEE
Confidence 57899998843222 121111 11 55677787 774 43 67778889999999985421 1 1111
Q ss_pred eecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCC-----CccceeEEeCCCcCCcceEEEe--cCCCcc-E-EEE
Q 038702 71 HHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPA-----QRRSVATLQSPYISAIPCRFHA--HPHQVG-T-LAG 141 (154)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~-----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~-l~~ 141 (154)
......+ ..-.|...+....|+.+-++..|..++.+ +++.+..+...+...-.-.++. .+ ++. + |++
T Consensus 174 R~f~lgs---q~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~-~g~gyLivS 249 (355)
T 3amr_A 174 RAFKMNS---QTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAA-DGKGYLMAS 249 (355)
T ss_dssp EEEECSS---CEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECG-GGCEEEEEE
T ss_pred EEecCCC---CcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecC-CCCEEEEEE
Confidence 1111111 12245667788889999888777777755 2334444322211111234444 33 333 4 455
Q ss_pred EcCCCeEEEeeC
Q 038702 142 ATGGGQVYVWTS 153 (154)
Q Consensus 142 ~~~d~~i~~wd~ 153 (154)
+-.+.+..+||.
T Consensus 250 sQG~~s~~Vydr 261 (355)
T 3amr_A 250 SQGNSSYAIYDR 261 (355)
T ss_dssp EGGGTEEEEEES
T ss_pred cCCCCEEEEEEC
Confidence 546779999986
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.003 Score=44.76 Aligned_cols=148 Identities=9% Similarity=-0.016 Sum_probs=81.8
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeec-ccCCeEEEEEcC--CCCEEEEeeC------CCeEEEEeccccccceeEee
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLS-HKRAVHSAYFSP--SGSSLATTSF------DDTIGIWSGVNFENTAMIHH 72 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~~~~~------d~~v~~~~~~~~~~~~~~~~ 72 (154)
+.++.|+.|..+|..+++. .-+... .......+..+| .+..++.+.. ++.|..+|.++++..-.+..
T Consensus 121 ~v~~~dg~l~alD~~tG~~----~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 121 YVGTLDGRLIALDAKTGKA----IWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp EEECTTSEEEEEETTTCCE----EEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred EEEcCCCEEEEEECCCCCE----eeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence 4567789999999988764 222211 100000011111 1334555443 58999999998877644432
Q ss_pred c--CCCCc------------------------eEeEEEEEEcCCCcEEEEEccCC-------------------eEEEec
Q 038702 73 N--NQTGR------------------------WISSFRAIWGWDDSCIFIGNMTR-------------------TVEVIS 107 (154)
Q Consensus 73 ~--~~~~~------------------------~~~~~~~~~~~~~~~l~~~~~d~-------------------~i~i~~ 107 (154)
. .+... .......++.|+...++.+..++ .|..+|
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD 276 (668)
T 1kv9_A 197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR 276 (668)
T ss_dssp SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred cCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEc
Confidence 1 00000 00000245677778888877665 399999
Q ss_pred CCCccceeEEeCCCc---------CCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 108 PAQRRSVATLQSPYI---------SAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 108 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
..+++.+-.++..+. ......+.........++.++.+|.++++|.
T Consensus 277 ~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~ 331 (668)
T 1kv9_A 277 PDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDR 331 (668)
T ss_dssp TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEET
T ss_pred CCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEEC
Confidence 999998877764211 1111122222101126888899999999985
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.011 Score=40.49 Aligned_cols=134 Identities=12% Similarity=-0.013 Sum_probs=74.7
Q ss_pred CcEEEEEccCCCCCCCCCceeec----ccCCeEEEEE-------cCCCCEEEEeeCCC-------eEEEEeccc-cccc-
Q 038702 8 GTACIWDLRSMATDKPEPTKVLS----HKRAVHSAYF-------SPSGSSLATTSFDD-------TIGIWSGVN-FENT- 67 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~~~~----~~~~v~~~~~-------~~~~~~l~~~~~d~-------~v~~~~~~~-~~~~- 67 (154)
+.|++.|+..+. ...+.. .......++| +++++.|+.+...+ .+.+.+... +...
T Consensus 162 ~~i~~ID~~~~~-----v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~ 236 (496)
T 3kya_A 162 KAIQLIDLKNRM-----LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDD 236 (496)
T ss_dssp EEEEEEETTTTE-----EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCST
T ss_pred CeEEEEECCCCE-----EEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceee
Confidence 456666666543 222222 1235889999 99999666665543 255555333 1111
Q ss_pred ----eeEeecCCCCceEeEEEEEEcCC-CcEEEEEccCCeEEEecCC-------Cccc-----------eeEEeCCCcCC
Q 038702 68 ----AMIHHNNQTGRWISSFRAIWGWD-DSCIFIGNMTRTVEVISPA-------QRRS-----------VATLQSPYISA 124 (154)
Q Consensus 68 ----~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~i~~~~-------~~~~-----------~~~~~~~~~~~ 124 (154)
..+... . ....++.+|+ +.++++-..++.|..+|+. ++.. ...+.......
T Consensus 237 ~~~~~~v~~~-~-----~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~ 310 (496)
T 3kya_A 237 RSDIQLIAAY-K-----QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPS 310 (496)
T ss_dssp TSCEEEEEEE-S-----CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSS
T ss_pred cccceeeccC-C-----CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCC
Confidence 112111 1 1123466884 5556666678889999987 4443 12222112223
Q ss_pred cceEEEecCCCcc-EEEEEcCCCeEEEeeC
Q 038702 125 IPCRFHAHPHQVG-TLAGATGGGQVYVWTS 153 (154)
Q Consensus 125 ~~~~~~~~~~~~~-~l~~~~~d~~i~~wd~ 153 (154)
....++++| +++ ++++-.....|+.++.
T Consensus 311 ~p~~ia~~p-~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 311 WEFQIFIHP-TGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp CCEEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred CceEEEEcC-CCCEEEEEeCCCCEEEEEec
Confidence 346799999 666 4566667788888653
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.009 Score=39.46 Aligned_cols=136 Identities=12% Similarity=-0.037 Sum_probs=77.7
Q ss_pred CCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEE-EEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEE
Q 038702 7 DGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSL-ATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRA 85 (154)
Q Consensus 7 d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (154)
...|+..++.... ...+.........++|++.+..| .+-...+.|..+++............... ...+
T Consensus 95 ~~~I~~i~~~~~~-----~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~-----p~gl 164 (386)
T 3v65_B 95 RIDIRQVLPHRSE-----YTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLES-----PGGL 164 (386)
T ss_dssp BSCEEEECTTSCC-----CEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSC-----CCCE
T ss_pred CccceeeccCCCc-----EEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCC-----ccEE
Confidence 3456666665433 23333444567899999855544 45456788999988765543333221111 1134
Q ss_pred EEcCC-CcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCC-CeEEEeeCC
Q 038702 86 IWGWD-DSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGG-GQVYVWTSD 154 (154)
Q Consensus 86 ~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-~~i~~wd~~ 154 (154)
++.+. +.++++-...+.|.+.++..... ..+.. .....+..++++|..+.++.+-... +.|...+++
T Consensus 165 avd~~~g~lY~~d~~~~~I~~~~~dg~~~-~~l~~-~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d 233 (386)
T 3v65_B 165 AVDWVHDKLYWTDSGTSRIEVANLDGAHR-KVLLW-QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD 233 (386)
T ss_dssp EEETTTTEEEEEETTTTEEEECBTTSCSC-EEEEC-SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred EEEeCCCeEEEEcCCCCeEEEEeCCCCce-EEeec-CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC
Confidence 56664 45555656677888888764432 22221 2223346788888555566665555 778777653
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.014 Score=37.93 Aligned_cols=115 Identities=7% Similarity=-0.155 Sum_probs=67.8
Q ss_pred CCeEEEEEcCCC-CEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEE-ccC-CeEEEecCC
Q 038702 33 RAVHSAYFSPSG-SSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIG-NMT-RTVEVISPA 109 (154)
Q Consensus 33 ~~v~~~~~~~~~-~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d-~~i~i~~~~ 109 (154)
.....+++.+.+ +++++-...+.|.+.++.............. ....+++.|.+..|+.. ... +.|..+++.
T Consensus 116 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~-----~P~~iavdp~~g~ly~td~~~~~~I~r~~~d 190 (349)
T 3v64_C 116 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLE-----KPRAIALHPMEGTIYWTDWGNTPRIEASSMD 190 (349)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCS-----CEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCC-----CcceEEEecCcCeEEEeccCCCCEEEEEeCC
Confidence 345688998754 4445555678899998876543333221111 12356778865544443 334 678777765
Q ss_pred CccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 110 QRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.. ....+. ......+..++++|..+.++++-...+.|..+|++
T Consensus 191 G~-~~~~~~-~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d 233 (349)
T 3v64_C 191 GS-GRRIIA-DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 233 (349)
T ss_dssp SC-SCEESC-CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CC-CcEEEE-ECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 33 222322 12233457889998566666776777888888764
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.016 Score=38.94 Aligned_cols=111 Identities=11% Similarity=0.054 Sum_probs=65.5
Q ss_pred CeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccC-C----eEEEec
Q 038702 34 AVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMT-R----TVEVIS 107 (154)
Q Consensus 34 ~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-~----~i~i~~ 107 (154)
....++++| ++..|+.+...+.|+.+|+............ .....+++++++++|+.+... + .+..++
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~------~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~ 211 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGL------SKVRTICWTHEADSMIITNDQNNNDRPNNYILT 211 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCC------SCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCC------CCcceEEEeCCCCEEEEEeCCCCcccceEEEEe
Confidence 456889998 4555666655588888998775544433211 123467899999966555432 1 233333
Q ss_pred CCCccce--eEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 108 PAQRRSV--ATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 108 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
. .+... ..+.. ...+..++++|.++.++++-..++.|..+|.+
T Consensus 212 ~-~g~~~~~~~l~~---~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~ 256 (430)
T 3tc9_A 212 R-ESGFKVITELTK---GQNCNGAETHPINGELYFNSWNAGQVFRYDFT 256 (430)
T ss_dssp G-GGTSCSEEEEEE---CSSCCCEEECTTTCCEEEEETTTTEEEEEETT
T ss_pred C-CCceeeeeeecc---CCCceEEEEeCCCCEEEEEECCCCEEEEEECC
Confidence 2 23222 22221 12234677888566777777778889888763
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.013 Score=37.16 Aligned_cols=112 Identities=10% Similarity=0.033 Sum_probs=66.3
Q ss_pred CCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEcc-CC-eEEEecCCC
Q 038702 33 RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNM-TR-TVEVISPAQ 110 (154)
Q Consensus 33 ~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~-~i~i~~~~~ 110 (154)
.....++|+++++++++-..++.|..+|..... ....... + ....+++.++++++++... ++ .|..++..+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-~~~~~~~---~---~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~ 104 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-QIHATVE---G---KVSGLAFTSNGDLVATGWNADSIPVVSLVKSD 104 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-EEEEECS---S---EEEEEEECTTSCEEEEEECTTSCEEEEEECTT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce-EEEEeCC---C---CceeEEEcCCCcEEEEeccCCcceEEEEcCCC
Confidence 567899999999877777788999999876532 2222111 1 2345678999986665433 22 466677777
Q ss_pred ccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 111 RRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
++........ .......++..+ .+..+++-..++.|+.+|.
T Consensus 105 g~~~~~~~~~-~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~ 145 (306)
T 2p4o_A 105 GTVETLLTLP-DAIFLNGITPLS-DTQYLTADSYRGAIWLIDV 145 (306)
T ss_dssp SCEEEEEECT-TCSCEEEEEESS-SSEEEEEETTTTEEEEEET
T ss_pred CeEEEEEeCC-CccccCcccccC-CCcEEEEECCCCeEEEEeC
Confidence 6643322211 111222333334 4445555556788888775
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.26 E-value=0.015 Score=37.30 Aligned_cols=137 Identities=10% Similarity=-0.005 Sum_probs=77.5
Q ss_pred CCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEE-EEeeCCCeEEEEeccc----cccceeEeecCCCCceE
Q 038702 6 TDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSL-ATTSFDDTIGIWSGVN----FENTAMIHHNNQTGRWI 80 (154)
Q Consensus 6 ~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~v~~~~~~~----~~~~~~~~~~~~~~~~~ 80 (154)
....|+..|+.... ...+.........++|++.+..+ .+-..++.|..+++.. .............
T Consensus 8 ~~~~I~~i~~~~~~-----~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~---- 78 (316)
T 1ijq_A 8 NRHEVRKMTLDRSE-----YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA---- 78 (316)
T ss_dssp CBSSEEEEETTSCC-----CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSC----
T ss_pred CCCeEEEEECCCcc-----eEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCC----
Confidence 34678888987654 33344445667899999866544 4545578999999876 2222222111111
Q ss_pred eEEEEEEcCC-CcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCC-CeEEEeeCC
Q 038702 81 SSFRAIWGWD-DSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGG-GQVYVWTSD 154 (154)
Q Consensus 81 ~~~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-~~i~~wd~~ 154 (154)
...+++.+. +.++++-...+.|.++++........+.. ....+..++.+|..+.++++.... +.|...+++
T Consensus 79 -p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~--~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d 151 (316)
T 1ijq_A 79 -PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE--NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 151 (316)
T ss_dssp -CCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC--TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred -cCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEEC--CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC
Confidence 113456654 44555556778899998864432222221 122346788888555555555443 677777653
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.019 Score=37.33 Aligned_cols=135 Identities=12% Similarity=-0.033 Sum_probs=77.1
Q ss_pred CcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEE-EeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEE
Q 038702 8 GTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLA-TTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAI 86 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (154)
..|+..++.... ...+......+..++|++....|+ +-...+.|..+++............... ...++
T Consensus 53 ~~I~~i~~~g~~-----~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~-----p~gla 122 (349)
T 3v64_C 53 IDIRQVLPHRSE-----YTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLES-----PGGLA 122 (349)
T ss_dssp SCEEEECTTSCC-----EEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSC-----CCEEE
T ss_pred cceEEEeCCCCe-----eEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCC-----ccEEE
Confidence 345555554322 222333344578999998655554 4456788988988766544333221111 11345
Q ss_pred EcCC-CcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCC-CeEEEeeCC
Q 038702 87 WGWD-DSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGG-GQVYVWTSD 154 (154)
Q Consensus 87 ~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-~~i~~wd~~ 154 (154)
+.+. +.++.+-...+.|.+.++..... ..+.. .....+..++++|..+.++.+-... +.|...+++
T Consensus 123 vd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~l~~-~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d 190 (349)
T 3v64_C 123 VDWVHDKLYWTDSGTSRIEVANLDGAHR-KVLLW-QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD 190 (349)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSC-EEEEC-TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred EecCCCeEEEEcCCCCeEEEEcCCCCce-EEEEe-CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC
Confidence 6664 45556666677899988764432 23321 1223346788888566666666555 788877653
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.026 Score=36.18 Aligned_cols=115 Identities=7% Similarity=-0.083 Sum_probs=68.1
Q ss_pred CCeEEEEEcCCCC-EEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccC--CeEEEecCC
Q 038702 33 RAVHSAYFSPSGS-SLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMT--RTVEVISPA 109 (154)
Q Consensus 33 ~~v~~~~~~~~~~-~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--~~i~i~~~~ 109 (154)
.....+++++.+. ..++-...+.|.+.++.............. ..-.++..|.+..++..... +.|...++.
T Consensus 77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~-----~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d 151 (316)
T 1ijq_A 77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS-----KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 151 (316)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTC-----CEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCC-----CcceEEeCCCCCEEEEEccCCCCeEEEEcCC
Confidence 3457889987554 445556678899999875443333321111 22355678866655444432 577777764
Q ss_pred CccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 110 QRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
+.....+.. .....+..++++|..+.++++-...+.|..+|++
T Consensus 152 -G~~~~~~~~-~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d 194 (316)
T 1ijq_A 152 -GVDIYSLVT-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 194 (316)
T ss_dssp -SCCEEEEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred -CCCeEEEEE-CCCCCceEEEEeccCCEEEEEECCCCeEEEEecC
Confidence 333333321 1223457889998555666666677889888864
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=96.98 E-value=0.036 Score=36.84 Aligned_cols=135 Identities=10% Similarity=-0.005 Sum_probs=74.7
Q ss_pred CCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEe-eCCCeEEEEeccccc----cceeEeecCCCCceEe
Q 038702 7 DGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATT-SFDDTIGIWSGVNFE----NTAMIHHNNQTGRWIS 81 (154)
Q Consensus 7 d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~v~~~~~~~~~----~~~~~~~~~~~~~~~~ 81 (154)
...|+..++.... ...+......+..++|++....|+.+ ...+.|..+++.... .......... .
T Consensus 91 ~~~I~~i~l~~~~-----~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~-----~ 160 (400)
T 3p5b_L 91 RHEVRKMTLDRSE-----YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ-----A 160 (400)
T ss_dssp TTEEEEECTTSCS-----CEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCS-----C
T ss_pred cceeEEEccCCcc-----eeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCC-----C
Confidence 3456666665433 33344556678899999865555444 457888888886532 2222211111 1
Q ss_pred EEEEEEcC-CCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcC-CCeEEEeeC
Q 038702 82 SFRAIWGW-DDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATG-GGQVYVWTS 153 (154)
Q Consensus 82 ~~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~~wd~ 153 (154)
...+++.+ .+.++.+-...+.|.+.++........+.. ....+..++.+|..+.++.+-.. .+.|...++
T Consensus 161 p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~--~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~ 232 (400)
T 3p5b_L 161 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE--NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 232 (400)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEEC--SSCCEEEEEEETTTTEEEEEECSSSCCEEEEET
T ss_pred cccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeC--CCCCcceEEEecccCeEEEEeCCCCCEEEEEeC
Confidence 22456666 455556666778899998875543333321 22234678888855555555433 366776665
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.049 Score=38.01 Aligned_cols=50 Identities=12% Similarity=0.011 Sum_probs=33.3
Q ss_pred CCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 100 TRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 100 d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
++.|..||+.+++.+-++..... .....+.. .+.++..++.|+.++.+|.
T Consensus 443 ~g~l~a~D~~tG~~~W~~~~~~~-~~~~~~~t---~gg~v~~g~~dg~l~a~D~ 492 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWTKWEKFA-AWGGTLYT---KGGLVWYATLDGYLKALDN 492 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEESSC-CCSBCEEE---TTTEEEEECTTSEEEEEET
T ss_pred CCeEEEEECCCCCEEEEecCCCC-ccceeEEE---CCCEEEEEcCCCeEEEEEC
Confidence 47899999999988776653221 11111221 3456777899999999986
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.012 Score=42.13 Aligned_cols=113 Identities=4% Similarity=-0.100 Sum_probs=64.3
Q ss_pred eEEEEEcCC-CCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEcc--CCeEEEecCCCc
Q 038702 35 VHSAYFSPS-GSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNM--TRTVEVISPAQR 111 (154)
Q Consensus 35 v~~~~~~~~-~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--d~~i~i~~~~~~ 111 (154)
...|++.+. ++++++-...+.|.+.++.......+....... ...+++.|.+.+|+.... .+.|..+++...
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~-----P~giavDp~~g~ly~td~~~~~~I~~~~~dG~ 529 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSK-----PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 529 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCC-----CCCEECCSSSSCCEECCCSSSCCEEBCCSSSC
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCC-----cceEEEccCCCcEEEcccCCCCeEEEEeCCCC
Confidence 456788754 445555556788999988765433332211111 113467776555544432 257777766432
Q ss_pred cceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 112 RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
....+.. .....+..++++|..+.++++-...+.|..+|++
T Consensus 530 -~~~~l~~-~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d 570 (699)
T 1n7d_A 530 -DIYSLVT-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 570 (699)
T ss_dssp -CCCEESC-SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSS
T ss_pred -CeeEEEe-CCCCCccEEEEeccCCEEEEEecCCCeEEEEccC
Confidence 2222221 1223346789998566677777778889888763
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.053 Score=36.49 Aligned_cols=118 Identities=14% Similarity=0.098 Sum_probs=70.1
Q ss_pred eEEEEEcCCCCEEE-EeeCCCeEEEEeccc--ccc--c-eeEeecCCCC---------ceEeEEEEEE---------cCC
Q 038702 35 VHSAYFSPSGSSLA-TTSFDDTIGIWSGVN--FEN--T-AMIHHNNQTG---------RWISSFRAIW---------GWD 90 (154)
Q Consensus 35 v~~~~~~~~~~~l~-~~~~d~~v~~~~~~~--~~~--~-~~~~~~~~~~---------~~~~~~~~~~---------~~~ 90 (154)
-..++|+|+++.|+ +-...+.|..++... ... . .........+ .......+++ .++
T Consensus 275 ~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~ 354 (433)
T 4hw6_A 275 NFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDE 354 (433)
T ss_dssp CEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCC
T ss_pred cccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCC
Confidence 34699999998554 445578899877653 211 1 1111101000 1112335677 667
Q ss_pred CcEEEEEccCCeEEEecCCCccceeEEeCCC----------------cCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 91 DSCIFIGNMTRTVEVISPAQRRSVATLQSPY----------------ISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 91 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
+.++++-...+.|+.++. ++. +.++-+.. .-..+..++++|.++.++++-...+.|+.++++
T Consensus 355 g~lyvaD~~n~~I~~~~~-~G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 355 YDFYFCDRDSHTVRVLTP-EGR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEEEEEETTTTEEEEECT-TSE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CcEEEEECCCCEEEEECC-CCC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 777777777788999985 443 33333211 112356789995477888887788899988764
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.037 Score=39.17 Aligned_cols=105 Identities=17% Similarity=0.108 Sum_probs=55.9
Q ss_pred EEEEEcC-CCCEEEEeeCCC-----------eEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccC---
Q 038702 36 HSAYFSP-SGSSLATTSFDD-----------TIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMT--- 100 (154)
Q Consensus 36 ~~~~~~~-~~~~l~~~~~d~-----------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--- 100 (154)
.++.|.. +++.++.|+.++ .+.+||..+..-........+..+.. ..++..|++++++.|+.+
T Consensus 402 ~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~--~~~~~l~~g~i~v~GG~~~~~ 479 (656)
T 1k3i_A 402 NAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTF--HTSVVLPDGSTFITGGQRRGI 479 (656)
T ss_dssp EEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBS--CEEEECTTSCEEEECCBSBCC
T ss_pred ceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCccc--CCeEECCCCCEEEECCcccCc
Confidence 3444433 677778877532 57777776554322210011111111 133456899999999864
Q ss_pred --------CeEEEecCCCccceeEEeCCCcCC-cceEEEecCCCccEEEEEcC
Q 038702 101 --------RTVEVISPAQRRSVATLQSPYISA-IPCRFHAHPHQVGTLAGATG 144 (154)
Q Consensus 101 --------~~i~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~ 144 (154)
..+.+||..+.+-.. +....... ........| ++++++.|+.
T Consensus 480 ~~~~~~~~~~v~~ydp~t~~W~~-~~~~~~~R~~hs~a~ll~-dg~v~v~GG~ 530 (656)
T 1k3i_A 480 PFEDSTPVFTPEIYVPEQDTFYK-QNPNSIVRVYHSISLLLP-DGRVFNGGGG 530 (656)
T ss_dssp TTCCCSBCCCCEEEEGGGTEEEE-CCCCSSCCCTTEEEEECT-TSCEEEEECC
T ss_pred CcCCCCcccceEEEcCCCCceee-cCCCCCccccccHhhcCC-CcEEEecCCC
Confidence 458899987654221 11111111 112233456 7788988884
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.038 Score=34.44 Aligned_cols=142 Identities=7% Similarity=-0.033 Sum_probs=81.3
Q ss_pred ecCCCcEEEEEccCCCCCCCCCceee--cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccce---eEeec---CC
Q 038702 4 SSTDGTACIWDLRSMATDKPEPTKVL--SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTA---MIHHN---NQ 75 (154)
Q Consensus 4 ~~~d~~v~vw~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~---~~~~~---~~ 75 (154)
...++.|...|.. ++ ..... +-....-.+++.+++.++++.-.++.+.++++....... ..... ..
T Consensus 45 ~d~~~~I~~ld~~-g~-----v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~ 118 (255)
T 3qqz_A 45 INKPAAIVEMTTN-GD-----LIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESP 118 (255)
T ss_dssp EETTEEEEEEETT-CC-----EEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCC
T ss_pred ECCCCeEEEEeCC-CC-----EEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeecccccccc
Confidence 3445556666665 32 22222 222457788898888776776667888888876654311 11100 01
Q ss_pred CCceEeEEEEEEcCCCcEEEEEccCCeEEEecCC---CccceeEEeC------CCcCCcceEEEecCCCccEEEEEcCCC
Q 038702 76 TGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPA---QRRSVATLQS------PYISAIPCRFHAHPHQVGTLAGATGGG 146 (154)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~---~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~d~ 146 (154)
...... .++|+|.+..|.++.......+|... ....+..+.. ..... ...++++|..+.+++.....+
T Consensus 119 ~N~g~E--GLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d-~S~l~~dp~tg~lliLS~~s~ 195 (255)
T 3qqz_A 119 TNCGFE--GLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDD-VSGAEFNQQKNTLLVLSHESR 195 (255)
T ss_dssp CSSCCE--EEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSC-CCEEEEETTTTEEEEEETTTT
T ss_pred ccCCcc--eEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCC-ceeEEEcCCCCeEEEEECCCC
Confidence 111112 56899998777777665555555543 1112222211 11112 367899998888888888888
Q ss_pred eEEEeeCC
Q 038702 147 QVYVWTSD 154 (154)
Q Consensus 147 ~i~~wd~~ 154 (154)
.+..+|.+
T Consensus 196 ~L~~~d~~ 203 (255)
T 3qqz_A 196 ALQEVTLV 203 (255)
T ss_dssp EEEEECTT
T ss_pred eEEEEcCC
Confidence 88888763
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.063 Score=36.84 Aligned_cols=115 Identities=10% Similarity=-0.052 Sum_probs=68.7
Q ss_pred CeEEEEEcCC-CC-EEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEE-------cCCCcEEEEEccCC---
Q 038702 34 AVHSAYFSPS-GS-SLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIW-------GWDDSCIFIGNMTR--- 101 (154)
Q Consensus 34 ~v~~~~~~~~-~~-~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~d~--- 101 (154)
....|+|+|. .. ++++-...+.|++.|+.......+..... ...-....++| ++++.+|+.+...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~--~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~ 217 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINT--IPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKG 217 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTT--SSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCc--cccCCCcEEEEeecccccCCCCCEEEEEeCCCCCc
Confidence 3568999983 44 44444445678888888766665543221 11123446789 99998666665443
Q ss_pred ----eEEEecCCC-ccce-----eEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 102 ----TVEVISPAQ-RRSV-----ATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 102 ----~i~i~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.|.+++... ++.. ..+. ....+..++.+|.++.++++-..++.|..+|+
T Consensus 218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~---~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~ 276 (496)
T 3kya_A 218 DESPSVYIIKRNADGTFDDRSDIQLIA---AYKQCNGATIHPINGELYFNSYEKGQVFRLDL 276 (496)
T ss_dssp GGEEEEEEEECCTTSCCSTTSCEEEEE---EESCCCCEEECTTTCCEEEEETTTTEEEEECH
T ss_pred ccCceEEEEecCCCCceeecccceeec---cCCCceEEEEcCCCCeEEEEECCCCEEEEEec
Confidence 255665333 2221 1222 11223567888866777777788889998875
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=96.78 E-value=0.047 Score=35.11 Aligned_cols=115 Identities=6% Similarity=-0.139 Sum_probs=67.8
Q ss_pred CCeEEEEEcCC-CCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEc--cCCeEEEecCC
Q 038702 33 RAVHSAYFSPS-GSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGN--MTRTVEVISPA 109 (154)
Q Consensus 33 ~~v~~~~~~~~-~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~d~~i~i~~~~ 109 (154)
.....+++.+. ++++++-...+.|.+.++.............. ....++..|.+..|+... ..+.|...++.
T Consensus 79 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~-----~P~giavdp~~g~ly~td~~~~~~I~r~~~d 153 (318)
T 3sov_A 79 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELD-----QPRAIALDPSSGFMYWTDWGEVPKIERAGMD 153 (318)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS-----SEEEEEEEGGGTEEEEEECSSSCEEEEEETT
T ss_pred CCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCC-----CccEEEEeCCCCEEEEEecCCCCEEEEEEcC
Confidence 35567889874 44555555678899999876543333221111 123456777655554444 24677777765
Q ss_pred CccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 110 QRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
. .....+.. .....+..++++|..+.++.+-+..+.|..+|++
T Consensus 154 G-~~~~~~~~-~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d 196 (318)
T 3sov_A 154 G-SSRFIIIN-SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD 196 (318)
T ss_dssp S-CSCEEEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred C-CCeEEEEE-CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCC
Confidence 3 32333321 2233457889998566666666677889888764
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.06 Score=36.25 Aligned_cols=114 Identities=17% Similarity=0.116 Sum_probs=68.4
Q ss_pred CeEEEEEcCCCCEEEEeeCCCeEEEEecccccc----------ce--eEeecC-CCCceEeEEEEEEcCC---CcEEEEE
Q 038702 34 AVHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN----------TA--MIHHNN-QTGRWISSFRAIWGWD---DSCIFIG 97 (154)
Q Consensus 34 ~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~----------~~--~~~~~~-~~~~~~~~~~~~~~~~---~~~l~~~ 97 (154)
.|..+..+|+|++|+..+.. .|.+..+..+.. .. .+.... .......+.++.|+|- +..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 57889999999999888544 688888773221 11 111111 0001123457789995 4589999
Q ss_pred ccCCeEEEecCCCcc--ceeEEeCCC-------cCCcceEEEecCCCccEEEE--EcCCCeEEE
Q 038702 98 NMTRTVEVISPAQRR--SVATLQSPY-------ISAIPCRFHAHPHQVGTLAG--ATGGGQVYV 150 (154)
Q Consensus 98 ~~d~~i~i~~~~~~~--~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~--~~~d~~i~~ 150 (154)
..|+.||+||+.... +. .++... ...-..+++|.+ ++-.|.. .+..|.|+-
T Consensus 146 tsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~-~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSK-DGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp ETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECT-TSSCEEEEECTTSCEEEE
T ss_pred ecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcC-CCcEEEEEecCCCCCEEE
Confidence 999999999998522 22 332111 012235778877 5544444 447787764
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.028 Score=40.19 Aligned_cols=113 Identities=8% Similarity=-0.022 Sum_probs=60.0
Q ss_pred CCeEEEEEcCCCCEEEEeeC--CCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCc-EEEEEccCCeEEEecCC
Q 038702 33 RAVHSAYFSPSGSSLATTSF--DDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDS-CIFIGNMTRTVEVISPA 109 (154)
Q Consensus 33 ~~v~~~~~~~~~~~l~~~~~--d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~i~~~~ 109 (154)
.....|+++|.+.+|+.+.. .+.|...++.......+...... ..-.++++|++. ++++-...+.|..+++.
T Consensus 496 ~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~-----~PnGlavd~~~~~LY~aD~~~~~I~~~d~d 570 (699)
T 1n7d_A 496 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ-----WPNGITLDLLSGRLYWVDSKLHSISSIDVN 570 (699)
T ss_dssp CCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCS-----SCCCEEECTTTCCEEEEETTTTEEEEECSS
T ss_pred CCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCC-----CccEEEEeccCCEEEEEecCCCeEEEEccC
Confidence 34577888886554444432 26777777654333222211111 111457888755 44555566789999986
Q ss_pred CccceeEEeC-CCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 110 QRRSVATLQS-PYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 110 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
... ...+.. ......+..+++.. ..++++....+.|..+|.
T Consensus 571 G~~-~~~~~~~~~~~~~P~glavd~--~~lywtd~~~~~V~~~d~ 612 (699)
T 1n7d_A 571 GGN-RKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSANR 612 (699)
T ss_dssp SSC-CEEECCCSSSCSSCCCCEEET--TEEEEECSTTTCEEEEET
T ss_pred CCc-eEEEEecCCcCCCceEeEEEC--CEEEEEeCCCCeEEEEEc
Confidence 433 233321 11112223455554 356666666778887764
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.11 Score=37.78 Aligned_cols=116 Identities=7% Similarity=-0.079 Sum_probs=69.1
Q ss_pred cCCeEEEEEcCCCCE-EEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEcc--CCeEEEecC
Q 038702 32 KRAVHSAYFSPSGSS-LATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNM--TRTVEVISP 108 (154)
Q Consensus 32 ~~~v~~~~~~~~~~~-l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--d~~i~i~~~ 108 (154)
......|++.+.+.. +++-...+.|.+.++.......+...... ....+++.|...+|+.... .+.|...++
T Consensus 470 l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~-----~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~ 544 (791)
T 3m0c_C 470 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS-----KPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 544 (791)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTC-----CEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred CCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCC-----CcceEEEecCCCCEEEecCCCCCeEEEEec
Confidence 345678999886654 44555678899999876554444332211 1335677887555554432 267887777
Q ss_pred CCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 109 AQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.... ...+.. .....+..+++++..+.++++-.....|...|++
T Consensus 545 dG~~-~~~lv~-~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d 588 (791)
T 3m0c_C 545 NGVD-IYSLVT-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 588 (791)
T ss_dssp TSCC-EEEEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCc-eEEEEe-CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecC
Confidence 5433 333332 2223446788887566666665667788887763
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.11 Score=36.59 Aligned_cols=144 Identities=13% Similarity=0.015 Sum_probs=78.2
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceee--ccc--CCeEE-EEEcCCCCEEEEee------CCCeEEEEeccccccceeE
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVL--SHK--RAVHS-AYFSPSGSSLATTS------FDDTIGIWSGVNFENTAMI 70 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~--~~~--~~v~~-~~~~~~~~~l~~~~------~d~~v~~~~~~~~~~~~~~ 70 (154)
+.++.|+.|.-+|..+++. .-+.. .+. ..+.+ ..+ .++ .++.++ .++.|.-+|.++++..-.+
T Consensus 125 ~v~t~dg~l~AlDa~TG~~----~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~ 198 (599)
T 1w6s_A 125 LKTQLDGNVAALNAETGET----VWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRA 198 (599)
T ss_dssp EEECTTSEEEEEETTTCCE----EEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred EEEcCCCEEEEEECCCCCE----EEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEE
Confidence 4566788888888877764 22211 110 01111 111 134 455554 3789999999988765433
Q ss_pred eecCCC----------------------------------CceEeEEEEEEcCCCcEEEEEccC----------------
Q 038702 71 HHNNQT----------------------------------GRWISSFRAIWGWDDSCIFIGNMT---------------- 100 (154)
Q Consensus 71 ~~~~~~----------------------------------~~~~~~~~~~~~~~~~~l~~~~~d---------------- 100 (154)
...... +..+. ...++.++...++.+..+
T Consensus 199 ~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W-~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~ 277 (599)
T 1w6s_A 199 YATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNW-GWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWT 277 (599)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCC-SCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTS
T ss_pred cCCCCccccccccccccccccccccccccccCCCcceecCCCccc-cceeEeCCCCEEEEeCCCCccccCcccCCCcccc
Confidence 321110 00000 012345566666666544
Q ss_pred CeEEEecCCCccceeEEeCCCcC-------CcceEEEec-CCCc---cEEEEEcCCCeEEEeeC
Q 038702 101 RTVEVISPAQRRSVATLQSPYIS-------AIPCRFHAH-PHQV---GTLAGATGGGQVYVWTS 153 (154)
Q Consensus 101 ~~i~i~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~---~~l~~~~~d~~i~~wd~ 153 (154)
+.|..+|.++++.+-.++..+.. ....-+... . ++ ..++.++.+|.++++|.
T Consensus 278 ~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~-~G~~~~~v~~~~~~G~l~~lD~ 340 (599)
T 1w6s_A 278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDK-DGKARKLLTHPDRNGIVYTLDR 340 (599)
T ss_dssp SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECT-TSCEEEEEEEECTTSEEEEEET
T ss_pred ceEEEEeCCCCceeeEeecCCCccccccCCCccEEEecccc-CCcEEEEEEEECCCcEEEEEEC
Confidence 47899999999988776643211 011112221 2 34 46777889999999886
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=96.54 E-value=0.11 Score=36.38 Aligned_cols=51 Identities=10% Similarity=0.115 Sum_probs=34.1
Q ss_pred CCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 100 TRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 100 d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
+|.|..||+.+++.+-+...... .....+.. .+.+++.++.|+.++.||.+
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~-~~~g~~~t---agglvf~g~~dg~l~A~D~~ 515 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLP-LWAGVLAT---AGNLVFTGTGDGYFKAFDAK 515 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSC-CCSCCEEE---TTTEEEEECTTSEEEEEETT
T ss_pred cceEEEEECCCCCEEEEecCCCC-CcccceEe---CCCEEEEECCCCcEEEEECC
Confidence 57899999999988766653221 11111222 34677779999999999863
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=96.49 E-value=0.074 Score=33.74 Aligned_cols=137 Identities=8% Similarity=-0.050 Sum_probs=69.8
Q ss_pred CCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCC-C-eEEEEeccccccceeEeecCCCCceEeEE
Q 038702 6 TDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFD-D-TIGIWSGVNFENTAMIHHNNQTGRWISSF 83 (154)
Q Consensus 6 ~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (154)
.++.|..||.... .............++++++++++++.... + .+..++..+++......... .....
T Consensus 51 ~~~~I~~~d~~g~------~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~--~~~~~-- 120 (306)
T 2p4o_A 51 EVGEIVSITPDGN------QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPD--AIFLN-- 120 (306)
T ss_dssp TTTEEEEECTTCC------EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTT--CSCEE--
T ss_pred CCCeEEEECCCCc------eEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCC--ccccC--
Confidence 3455555554321 22223334568899999999866655432 2 46666766655433222211 11111
Q ss_pred EEEEcCCCcEEEEEccCCeEEEecCCCccc-eeEEeC-------CCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 84 RAIWGWDDSCIFIGNMTRTVEVISPAQRRS-VATLQS-------PYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 84 ~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
..+..+++..+++-..++.|..+|...++. +..... .........+ +|+.+.++++-...+.|..+|++
T Consensus 121 g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~ 197 (306)
T 2p4o_A 121 GITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVD 197 (306)
T ss_dssp EEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBC
T ss_pred cccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeC
Confidence 223344555555555678888888765421 111100 0111122334 55233456666678899988863
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=96.47 E-value=0.095 Score=34.83 Aligned_cols=117 Identities=6% Similarity=-0.079 Sum_probs=69.7
Q ss_pred ccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEcc--CCeEEEec
Q 038702 31 HKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNM--TRTVEVIS 107 (154)
Q Consensus 31 ~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--d~~i~i~~ 107 (154)
.......+++.+ .++++++-...+.|.+.++.............. ....++..|.+.+|+.... .+.|...+
T Consensus 157 ~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~-----~P~~iavdp~~g~ly~td~~~~~~I~~~~ 231 (400)
T 3p5b_L 157 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS-----KPRAIVVDPVHGFMYWTDWGTPAKIKKGG 231 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSC-----CEEEEEEETTTTEEEEEECSSSCCEEEEE
T ss_pred CCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCC-----CcceEEEecccCeEEEEeCCCCCEEEEEe
Confidence 344677899988 455555556678899998876554433322111 1235577886555554432 36777777
Q ss_pred CCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 108 PAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
+.... ...+.. .....+..++++|..+.++++-...+.|..+|++
T Consensus 232 ~dG~~-~~~~~~-~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d 276 (400)
T 3p5b_L 232 LNGVD-IYSLVT-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 276 (400)
T ss_dssp TTSCS-CEEEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCCc-cEEEEE-CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCC
Confidence 75433 233321 2223457889998555666666677888888764
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.16 Score=37.09 Aligned_cols=134 Identities=12% Similarity=-0.020 Sum_probs=71.5
Q ss_pred CcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCC-EEEEeeCCCeEEEEeccccc----cceeEeecCCCCceEeE
Q 038702 8 GTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGS-SLATTSFDDTIGIWSGVNFE----NTAMIHHNNQTGRWISS 82 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~ 82 (154)
..|+..++.... ...+......+..|+|++... ++++-...+.|..+++.... ...++..... ..
T Consensus 404 ~~Ir~i~l~~~~-----~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~-----~P 473 (791)
T 3m0c_C 404 HEVRKMTLDRSE-----YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ-----AP 473 (791)
T ss_dssp SSEEEECTTSCC-----CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCS-----CC
T ss_pred cceeEeeccCCc-----ceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCC-----Cc
Confidence 345555554332 333444456678999998554 44455557788888887532 1222221111 11
Q ss_pred EEEEEcCCC-cEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCC-CeEEEeeC
Q 038702 83 FRAIWGWDD-SCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGG-GQVYVWTS 153 (154)
Q Consensus 83 ~~~~~~~~~-~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-~~i~~wd~ 153 (154)
..+++.+.+ +++.+-...+.|.+.++.... ...+... ....+..++++|..+.++++-... +.|...++
T Consensus 474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~-~~~l~~~-~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~ 544 (791)
T 3m0c_C 474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRE-NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 544 (791)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEEEC-TTCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred ceeeeeecCCcEEEEecCCCeEEEEeCCCCe-EEEEEeC-CCCCcceEEEecCCCCEEEecCCCCCeEEEEec
Confidence 234566655 455555667889999887443 3333221 122246788888555555554333 67776665
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=96.45 E-value=0.13 Score=36.06 Aligned_cols=98 Identities=8% Similarity=0.040 Sum_probs=63.5
Q ss_pred EEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeC-CCeEEEEeccccccc----------eeEeecCCCCc
Q 038702 10 ACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSF-DDTIGIWSGVNFENT----------AMIHHNNQTGR 78 (154)
Q Consensus 10 v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~~~~~~~~~~~----------~~~~~~~~~~~ 78 (154)
|.|.|.+..............-......+.++|+|++++.++. +.++.++|.+..... ...... + .
T Consensus 300 v~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~-e--~ 376 (638)
T 3sbq_A 300 TPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEP-E--L 376 (638)
T ss_dssp CCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECC-B--C
T ss_pred eeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeec-c--C
Confidence 6777776521101113444455666778999999998877664 889999999853211 111111 1 1
Q ss_pred eEeEEEEEEcCCCcEEEEEccCCeEEEecCCC
Q 038702 79 WISSFRAIWGWDDSCIFIGNMTRTVEVISPAQ 110 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 110 (154)
-...+..+|.++|....+-.-|..|--|++..
T Consensus 377 GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 377 GLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp CSCEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred CCcccEEEECCCCceEeeeeecceEEEEeccH
Confidence 23456778999996666777899999999874
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.11 Score=34.02 Aligned_cols=141 Identities=10% Similarity=0.011 Sum_probs=74.7
Q ss_pred CCCcEEEEEccCCCCCCCCCceeec-----ccCCeEEEEEcC--CCC-EEEEe-eC--CCeEEEEeccccccce-eEeec
Q 038702 6 TDGTACIWDLRSMATDKPEPTKVLS-----HKRAVHSAYFSP--SGS-SLATT-SF--DDTIGIWSGVNFENTA-MIHHN 73 (154)
Q Consensus 6 ~d~~v~vw~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~--~~~-~l~~~-~~--d~~v~~~~~~~~~~~~-~~~~~ 73 (154)
.+|.|.++|..+..... ....+.+ ..-....+.+.+ +++ +|+.+ .. +.++.+|++....... .....
T Consensus 81 ~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~ 159 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTI 159 (355)
T ss_dssp -CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEE
T ss_pred CCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecc
Confidence 68899999987533211 1222222 234677788755 343 34333 22 5678888776543322 22111
Q ss_pred CCCCceEeEEEEEEcCCCcEEEEEc-----------------cCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCc
Q 038702 74 NQTGRWISSFRAIWGWDDSCIFIGN-----------------MTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQV 136 (154)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~~-----------------~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (154)
. .......-.+...++|.++++.. ..|.|.-++. ++ +..+. ..-..+..++|+| ++
T Consensus 160 ~-g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~~~~~--~~l~~pNGia~sp-Dg 232 (355)
T 3sre_A 160 R-HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-VRVVA--EGFDFANGINISP-DG 232 (355)
T ss_dssp C-CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-CEEEE--EEESSEEEEEECT-TS
T ss_pred c-cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-EEEee--cCCcccCcceECC-CC
Confidence 1 11111222456778888777754 1244555554 32 22222 1223457899999 55
Q ss_pred c-EEEEEcCCCeEEEeeCC
Q 038702 137 G-TLAGATGGGQVYVWTSD 154 (154)
Q Consensus 137 ~-~l~~~~~d~~i~~wd~~ 154 (154)
+ ++++-+..+.|..|+++
T Consensus 233 ~~lYvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 233 KYVYIAELLAHKIHVYEKH 251 (355)
T ss_dssp SEEEEEEGGGTEEEEEEEC
T ss_pred CEEEEEeCCCCeEEEEEEC
Confidence 4 55566678899998863
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.2 Score=36.34 Aligned_cols=115 Identities=10% Similarity=0.077 Sum_probs=62.7
Q ss_pred cCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeec-CCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCC
Q 038702 32 KRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHN-NQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQ 110 (154)
Q Consensus 32 ~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 110 (154)
...|.++...++++.|..|+.++-+..+|..+.+........ ...... +..+...+++.+.+... +-+..|+..+
T Consensus 405 ~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~--v~~i~~d~~g~lwigt~--~Gl~~~~~~~ 480 (795)
T 4a2l_A 405 SNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNEN--VYAILPDGEGNLWLGTL--SALVRFNPEQ 480 (795)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSC--EEEEEECSSSCEEEEES--SCEEEEETTT
T ss_pred CccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCe--eEEEEECCCCCEEEEec--CceeEEeCCC
Confidence 357899999888885666777666889998765433221100 011122 33455677777665543 4578888876
Q ss_pred ccceeEEeC----CCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 111 RRSVATLQS----PYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 111 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
++....... ........++...+ ++.+.+.. . +-+..||.
T Consensus 481 ~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWigt-~-~Gl~~~~~ 524 (795)
T 4a2l_A 481 RSFTTIEKEKDGTPVVSKQITTLFRDS-HKRLWIGG-E-EGLSVFKQ 524 (795)
T ss_dssp TEEEECCBCTTCCBCCCCCEEEEEECT-TCCEEEEE-S-SCEEEEEE
T ss_pred CeEEEccccccccccCCceEEEEEECC-CCCEEEEe-C-CceEEEeC
Confidence 543221111 00112224566666 55555544 3 44666653
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.12 Score=33.69 Aligned_cols=107 Identities=10% Similarity=0.007 Sum_probs=56.2
Q ss_pred cCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCC---CcEEEEEcc-C-----Ce
Q 038702 32 KRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWD---DSCIFIGNM-T-----RT 102 (154)
Q Consensus 32 ~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~-d-----~~ 102 (154)
-.....++|.|+|+++++ ..++.|.+++ ......................++++|+ +..|..+.. . +.
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 445679999999985555 5669999988 3322111111100000112446789998 444444433 2 56
Q ss_pred EEEecCCCcc-----ce-eEEeC-CCcCCcceEEEecCCCccEEEEE
Q 038702 103 VEVISPAQRR-----SV-ATLQS-PYISAIPCRFHAHPHQVGTLAGA 142 (154)
Q Consensus 103 i~i~~~~~~~-----~~-~~~~~-~~~~~~~~~~~~~~~~~~~l~~~ 142 (154)
|..++..... .+ ..+.. .........+++.| ++.++++.
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~ 152 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTT 152 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEEC
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEE
Confidence 7777766431 11 11221 01111224688999 77766664
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.21 Score=32.64 Aligned_cols=106 Identities=8% Similarity=-0.084 Sum_probs=55.0
Q ss_pred cCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCC---CcEEEEEcc----C----
Q 038702 32 KRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWD---DSCIFIGNM----T---- 100 (154)
Q Consensus 32 ~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~----d---- 100 (154)
-.....++|.|+|+++++ ..++.|.+++. ++. ..+..........-..+.++++|+ +..|..+.. +
T Consensus 28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp CSCEEEEEEEETTEEEEE-ETTTEEEEECS-SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred CCCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence 345789999999985554 56699998873 333 111111000000112446789997 444443332 2
Q ss_pred CeEEEecCCCc-------cce-eEEeCCCcCCcceEEEecCCCccEEEEE
Q 038702 101 RTVEVISPAQR-------RSV-ATLQSPYISAIPCRFHAHPHQVGTLAGA 142 (154)
Q Consensus 101 ~~i~i~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 142 (154)
+.|..++.... +.+ ..+... .......++|.| ++.++++.
T Consensus 105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~-~~h~~~~l~~~p-DG~Lyvt~ 152 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLKEVKTLIDGIPGA-YIHNGGRIRFGP-DGMLYITT 152 (354)
T ss_dssp EEEEEEEECSSSCCEEEEEEEEEEEECC-SSCCCCCEEECT-TSCEEEEC
T ss_pred eEEEEEEECCCCcCcCccEEEEEcCCCC-CCcCCceEEECC-CCcEEEEE
Confidence 55666665533 111 112211 111224688999 77766664
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.17 Score=31.55 Aligned_cols=116 Identities=11% Similarity=0.009 Sum_probs=66.7
Q ss_pred cccCCeEEEEEcCCCCEE-EEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecC
Q 038702 30 SHKRAVHSAYFSPSGSSL-ATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISP 108 (154)
Q Consensus 30 ~~~~~v~~~~~~~~~~~l-~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~ 108 (154)
+-...+..++|+|++..| ++...++.|...|.. ++......... ... .. .+++.+++.++++.-.++.+.++++
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g-~~D-~E--GIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDF-VKD-LE--TIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSS-CSS-EE--EEEECSTTEEEEEETTTTEEEEEEE
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCC-CCC-hH--HeEEeCCCEEEEEECCCCcEEEEEc
Confidence 344679999999976654 457778889888987 44333332211 111 11 3456788887777666778888887
Q ss_pred CCccc---eeEEeC-----CCcCCcceEEEecCCCccEEEEEcCCC-eEEEe
Q 038702 109 AQRRS---VATLQS-----PYISAIPCRFHAHPHQVGTLAGATGGG-QVYVW 151 (154)
Q Consensus 109 ~~~~~---~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~~w 151 (154)
..... +....- +.... .-.++++|....++++.-.+. .|+.|
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g-~EGLA~d~~~~~L~va~E~~p~~i~~~ 149 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCG-FEGLAYSRQDHTFWFFKEKNPIEVYKV 149 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSC-CEEEEEETTTTEEEEEEESSSEEEEEE
T ss_pred CCCCeeeeeeeeccccccccccCC-cceEEEeCCCCEEEEEECcCCceEEEE
Confidence 64432 222221 11122 257899994434444443443 44444
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.49 Score=33.51 Aligned_cols=115 Identities=7% Similarity=-0.108 Sum_probs=67.0
Q ss_pred CCeEEEEEcCCCC-EEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEcc--CCeEEEecCC
Q 038702 33 RAVHSAYFSPSGS-SLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNM--TRTVEVISPA 109 (154)
Q Consensus 33 ~~v~~~~~~~~~~-~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--d~~i~i~~~~ 109 (154)
.....+++.+.+. ++++-...+.|.+.++............... ...+++.|.+.+|+.... .+.|...++.
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~-----P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d 158 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQ-----PRAIALDPSSGFMYWTDWGEVPKIERAGMD 158 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSC-----CCCEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCC-----CceEEEecCCCeEEEeccCCCCEEEEEECC
Confidence 4678999998555 4455556789999998765544433211111 124567776555544442 3456555554
Q ss_pred CccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 110 QRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
|.....+-.. ....+..+++++..+.++++-...+.|...|++
T Consensus 159 -G~~~~~l~~~-~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~d 201 (619)
T 3s94_A 159 -GSSRFIIINS-EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD 201 (619)
T ss_dssp -SCSCEEEECS-SCSSEEEEEEETTTTEEEEEETTTCCEEEESSS
T ss_pred -CCceEEEEeC-CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCC
Confidence 3333333221 233456788888555666666677788877763
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=95.06 E-value=0.49 Score=32.25 Aligned_cols=103 Identities=13% Similarity=0.153 Sum_probs=55.6
Q ss_pred CcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccce-eEe-ecCCCCceEeEEEE
Q 038702 8 GTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTA-MIH-HNNQTGRWISSFRA 85 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~ 85 (154)
.++.++|+++.. ..+.......|..-+|-.+.. |+-. .+..|.-|++.....+. .+. +....+ ...+..
T Consensus 86 ~~lQiFnle~K~-----klks~~~~e~VvfWkWis~~~-l~lV-T~taVyHWsi~~~s~P~kvFdR~~~L~~--~QIInY 156 (494)
T 1bpo_A 86 KTLQIFNIEMKS-----KMKAHTMTDDVTFWKWISLNT-VALV-TDNAVYHWSMEGESQPVKMFDRHSSLAG--CQIINY 156 (494)
T ss_dssp TEEEEEETTTTE-----EEEEEECSSCCCEEEEEETTE-EEEE-CSSEEEEEESSSSCCCEEEEECCGGGTT--CEEEEE
T ss_pred CeEEEEchHHhh-----hhcceecCCCceEEEecCCCe-EEEE-cCCeeEEecccCCCCchhheecchhccc--ceEEEE
Confidence 456666665543 222223345666777754433 3222 24568889987644442 232 332222 344455
Q ss_pred EEcCCCcEEEEEc-------cCCeEEEecCCCccceeEEeCC
Q 038702 86 IWGWDDSCIFIGN-------MTRTVEVISPAQRRSVATLQSP 120 (154)
Q Consensus 86 ~~~~~~~~l~~~~-------~d~~i~i~~~~~~~~~~~~~~~ 120 (154)
..+++.++++..+ -.|.+.+|..+.+.. +.+.+|
T Consensus 157 ~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~ieGh 197 (494)
T 1bpo_A 157 RTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGH 197 (494)
T ss_dssp EECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-EEECCS
T ss_pred EECCCCCeEEEEeecccCCcccceEEEeecccccc-chheee
Confidence 6788888766443 346788998875542 345544
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=94.87 E-value=0.55 Score=31.82 Aligned_cols=110 Identities=9% Similarity=0.029 Sum_probs=65.7
Q ss_pred EcCCCCEEEEeeCCCeEEEEeccccccceeEeecC--CCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCcc-----
Q 038702 40 FSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNN--QTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRR----- 112 (154)
Q Consensus 40 ~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~----- 112 (154)
.+.++..++.+ .++.||.-++.....-..+.... .... ...+..+|+|.+|+..+. ..|.|-.+..+.
T Consensus 28 ~~~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~---i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~ 102 (452)
T 3pbp_A 28 SSQNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDD---TFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVED 102 (452)
T ss_dssp EETTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCT---TCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCC
T ss_pred EEcCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCc---eeEEEECCCCCEEEEecC-CeEEEEEecCccccCcc
Confidence 34466666555 45788888877543322332221 1111 124567999999998874 477887776221
Q ss_pred -------ceeEEeCCC----cCCcceEEEecCCC--ccEEEEEcCCCeEEEeeCC
Q 038702 113 -------SVATLQSPY----ISAIPCRFHAHPHQ--VGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 113 -------~~~~~~~~~----~~~~~~~~~~~~~~--~~~l~~~~~d~~i~~wd~~ 154 (154)
..+.+.-.. .......+.|||-. +..|++-..|+.|++||++
T Consensus 103 ~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~ 157 (452)
T 3pbp_A 103 VSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDIL 157 (452)
T ss_dssp HHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETT
T ss_pred cccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcc
Confidence 011222111 11223678999953 3379999999999999984
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.37 Score=29.56 Aligned_cols=106 Identities=17% Similarity=0.069 Sum_probs=59.1
Q ss_pred CCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccc------eeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEe
Q 038702 33 RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT------AMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVI 106 (154)
Q Consensus 33 ~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~ 106 (154)
..+..++|+|+|.+.+. .+|.+.-.+..+.... ..+....-.. . -.+.|.|+|.+.++ .||.|+-+
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~--F--~a~~fD~~G~LYav--~dG~iyr~ 112 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ--F--QFLFFDPNGYLYAV--SKDKLYKA 112 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG--C--SEEEECTTSCEEEE--ETTEEEEE
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc--c--eEEEECCCCCEEEe--CCCEEEEe
Confidence 47789999999986666 7777666665442222 1111101000 0 13568899988877 56988777
Q ss_pred cCCCccce-----eEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEE
Q 038702 107 SPAQRRSV-----ATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVY 149 (154)
Q Consensus 107 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 149 (154)
+..+.... .+.-+.........+.+.| ++.+.+.. |+.++
T Consensus 113 ~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 113 SPPQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQFY 157 (236)
T ss_dssp SCCCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTEEE
T ss_pred CCCcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe--CCcEE
Confidence 76432211 1111111222235678888 77766665 66653
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=94.55 E-value=0.59 Score=30.71 Aligned_cols=100 Identities=10% Similarity=0.035 Sum_probs=53.7
Q ss_pred CCeEEEEEcCCCCEEEEeeC-----------------CCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEE
Q 038702 33 RAVHSAYFSPSGSSLATTSF-----------------DDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIF 95 (154)
Q Consensus 33 ~~v~~~~~~~~~~~l~~~~~-----------------d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 95 (154)
...+.+.+.++|++.++... .|.+.-++. .+......... ..-.++|+|+++.++
T Consensus 165 ~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~------~pNGia~spDg~~lY 236 (355)
T 3sre_A 165 PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGFD------FANGINISPDGKYVY 236 (355)
T ss_dssp SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCEEEEEEES------SEEEEEECTTSSEEE
T ss_pred CCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEEEeecCCc------ccCcceECCCCCEEE
Confidence 45788999999987776541 233444443 22111111111 112568999998766
Q ss_pred EE-ccCCeEEEecCCC-ccc--eeEEeCCCcCCcceEEEecCCCccEEEEEc
Q 038702 96 IG-NMTRTVEVISPAQ-RRS--VATLQSPYISAIPCRFHAHPHQVGTLAGAT 143 (154)
Q Consensus 96 ~~-~~d~~i~i~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 143 (154)
.+ +..+.|+.|++.. ++. ...+.. ...+-.++.+++++++.+++.
T Consensus 237 vadt~~~~I~~~~~~~~g~l~~~~~~~~---~g~PDGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 237 IAELLAHKIHVYEKHANWTLTPLRVLSF---DTLVDNISVDPVTGDLWVGCH 285 (355)
T ss_dssp EEEGGGTEEEEEEECTTSCEEEEEEEEC---SSEEEEEEECTTTCCEEEEEE
T ss_pred EEeCCCCeEEEEEECCCCcEecCEEEeC---CCCCceEEEeCCCCcEEEEec
Confidence 55 4678899999863 322 122211 222344566652256666554
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=94.50 E-value=1.1 Score=33.60 Aligned_cols=36 Identities=11% Similarity=0.205 Sum_probs=30.6
Q ss_pred EEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEe
Q 038702 83 FRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQ 118 (154)
Q Consensus 83 ~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 118 (154)
..++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 239 ~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 239 ISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp EEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred EEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 455667788899999999999999999999887754
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=94.47 E-value=0.62 Score=30.61 Aligned_cols=137 Identities=11% Similarity=0.089 Sum_probs=75.0
Q ss_pred ecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCC----CC---EEEEeeC---CCeEEEEecc--ccccceeEe
Q 038702 4 SSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPS----GS---SLATTSF---DDTIGIWSGV--NFENTAMIH 71 (154)
Q Consensus 4 ~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~~~~~---d~~v~~~~~~--~~~~~~~~~ 71 (154)
....+-+.+||+ +++ ..+.... +.++.+..-|. |+ +.++... +++|.++++. +.. .....
T Consensus 46 t~k~~gL~Vydl-~G~-----~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~ 117 (355)
T 3amr_A 46 TNKKSGLVVYSL-DGK-----MLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMT 117 (355)
T ss_dssp EETTTEEEEEET-TSC-----EEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECS
T ss_pred EcCCCCEEEEcC-CCc-----EEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeecc
Confidence 344567999999 444 3443322 56777777662 22 2333333 5789999773 322 22221
Q ss_pred ec--C-CCC-ceEeEEEEEEcCC-Cc-EEEEEccCCeEEEecCC-------CccceeEEeCCCcCCcceEEEecCCCccE
Q 038702 72 HN--N-QTG-RWISSFRAIWGWD-DS-CIFIGNMTRTVEVISPA-------QRRSVATLQSPYISAIPCRFHAHPHQVGT 138 (154)
Q Consensus 72 ~~--~-~~~-~~~~~~~~~~~~~-~~-~l~~~~~d~~i~i~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (154)
.. . ... ....-+++--+|. +. +++....+|.+..|++. +.+.++++.... ..-.+...+ ....
T Consensus 118 ~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs---q~EgcvvDd-~~g~ 193 (355)
T 3amr_A 118 DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNS---QTEGMAADD-EYGR 193 (355)
T ss_dssp CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSS---CEEEEEEET-TTTE
T ss_pred ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCC---CcceEEEcC-CCCe
Confidence 10 0 000 1112222212564 43 68888899999999883 345667766432 224566776 4466
Q ss_pred EEEEcCCCeEEEee
Q 038702 139 LAGATGGGQVYVWT 152 (154)
Q Consensus 139 l~~~~~d~~i~~wd 152 (154)
|..+-++.-|..+|
T Consensus 194 Lyv~eEd~GIw~~d 207 (355)
T 3amr_A 194 LYIAEEDEAIWKFS 207 (355)
T ss_dssp EEEEETTTEEEEEE
T ss_pred EEEecccceEEEEe
Confidence 77777776665555
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.45 E-value=0.19 Score=32.73 Aligned_cols=115 Identities=9% Similarity=0.010 Sum_probs=62.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecc-cCCeEEEEE--cC-CCCEEEEe-eCCCeEEEEeccccccceeEeecCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSH-KRAVHSAYF--SP-SGSSLATT-SFDDTIGIWSGVNFENTAMIHHNNQ 75 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~-~~~v~~~~~--~~-~~~~l~~~-~~d~~v~~~~~~~~~~~~~~~~~~~ 75 (154)
++.++.||.|.-.|..+++. .-++... ..++....- .+ ++..++.. +.||.+..++..++...........
T Consensus 13 V~v~t~dG~l~Ald~~tG~~----~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l 88 (339)
T 2be1_A 13 LIAADVEGGLHAVDRRNGHI----IWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL 88 (339)
T ss_dssp EEEEETTSCEEEEETTTTEE----EEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred EEEEeCCCeEEEEECCCCcE----EEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence 36788999999999887763 1222111 122222110 01 22333333 5799999888877643322221110
Q ss_pred C-CceEeE-EEEEE-c----CCCcEEEEEccCCeEEEecCCCccceeEEeC
Q 038702 76 T-GRWISS-FRAIW-G----WDDSCIFIGNMTRTVEVISPAQRRSVATLQS 119 (154)
Q Consensus 76 ~-~~~~~~-~~~~~-~----~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~ 119 (154)
. ...... -.... . ..+..+++|+.++.+...|+++|+.+..+..
T Consensus 89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 0 000000 00000 0 1456788999999999999999998887763
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=94.12 E-value=0.86 Score=30.95 Aligned_cols=34 Identities=12% Similarity=-0.008 Sum_probs=24.8
Q ss_pred cCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccc
Q 038702 32 KRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFE 65 (154)
Q Consensus 32 ~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~ 65 (154)
-.....|+|.|+|+++++-...+.|.+++..++.
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~ 59 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGS 59 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCc
Confidence 4466799999999977776555578888765433
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=93.94 E-value=1.3 Score=32.19 Aligned_cols=114 Identities=9% Similarity=-0.067 Sum_probs=61.1
Q ss_pred cCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecC--CCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCC
Q 038702 32 KRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNN--QTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPA 109 (154)
Q Consensus 32 ~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~ 109 (154)
...|.++...++++..+. +.. -+..+|..+.+......... ..... +..+...+++.+.+.....| +..+|..
T Consensus 449 ~~~v~~i~~d~~g~lwig-t~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~--i~~i~~d~~g~lWigt~~~G-l~~~~~~ 523 (781)
T 3v9f_A 449 LLDVRVFYEDKNKKIWIG-THA-GVFVIDLASKKVIHHYDTSNSQLLENF--VRSIAQDSEGRFWIGTFGGG-VGIYTPD 523 (781)
T ss_dssp CCCEEEEEECTTSEEEEE-ETT-EEEEEESSSSSCCEEECTTTSSCSCSC--EEEEEECTTCCEEEEESSSC-EEEECTT
T ss_pred CCeEEEEEECCCCCEEEE-ECC-ceEEEeCCCCeEEecccCcccccccce--eEEEEEcCCCCEEEEEcCCC-EEEEeCC
Confidence 457889988888875554 444 47888887655433221110 01122 33455677777665443344 6778876
Q ss_pred CccceeEEeCCC--cCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 110 QRRSVATLQSPY--ISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 110 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+++. ..+.... ......++...+ ++.+.++ +.+|.+..||.
T Consensus 524 ~~~~-~~~~~~~~l~~~~i~~i~~d~-~g~lWi~-T~~Glv~~~d~ 566 (781)
T 3v9f_A 524 MQLV-RKFNQYEGFCSNTINQIYRSS-KGQMWLA-TGEGLVCFPSA 566 (781)
T ss_dssp CCEE-EEECTTTTCSCSCEEEEEECT-TSCEEEE-ETTEEEEESCT
T ss_pred CCeE-EEccCCCCCCCCeeEEEEECC-CCCEEEE-ECCCceEEECC
Confidence 6543 2332111 112225566666 5555554 34665477764
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=93.22 E-value=1 Score=28.92 Aligned_cols=133 Identities=5% Similarity=-0.082 Sum_probs=73.0
Q ss_pred CCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCCCEEEEee--CCCeEEEEeccccccceeEeecCCCCceEeEE
Q 038702 7 DGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATTS--FDDTIGIWSGVNFENTAMIHHNNQTGRWISSF 83 (154)
Q Consensus 7 d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~--~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (154)
.+.|.+.++.... ...+. ........+++.|.+..++.+. ..+.|...++............. ...-
T Consensus 100 ~~~I~~~~~dG~~-----~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l-----~~Pn 169 (318)
T 3sov_A 100 TNRIEVSNLDGSL-----RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEI-----YWPN 169 (318)
T ss_dssp TTEEEEEETTSCS-----CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSC-----SCEE
T ss_pred CCEEEEEECCCCc-----EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCC-----CCcc
Confidence 4456666654322 12222 3345678999998655555544 35778887776543333222111 1223
Q ss_pred EEEEcCCCcEEE-EEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 84 RAIWGWDDSCIF-IGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 84 ~~~~~~~~~~l~-~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.+++++++..|. +-...+.|..+++.... ...+.. .....+..++... +.++.+-...+.|..+|.
T Consensus 170 glavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~-~~~~~P~glav~~--~~lywtd~~~~~V~~~~~ 236 (318)
T 3sov_A 170 GLTLDYEEQKLYWADAKLNFIHKSNLDGTN-RQAVVK-GSLPHPFALTLFE--DILYWTDWSTHSILACNK 236 (318)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEC-SCCSCEEEEEEET--TEEEEEETTTTEEEEEET
T ss_pred EEEEeccCCEEEEEECCCCEEEEEcCCCCc-eEEEec-CCCCCceEEEEeC--CEEEEEecCCCeEEEEEC
Confidence 568898665554 44566789999886433 233321 1122334556553 456666667778877765
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=93.03 E-value=1.9 Score=31.40 Aligned_cols=117 Identities=9% Similarity=0.067 Sum_probs=66.0
Q ss_pred cCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeec---CCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecC
Q 038702 32 KRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHN---NQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISP 108 (154)
Q Consensus 32 ~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~ 108 (154)
...|.++...++|+..+ |+.++-|..++..+.......... ......+ .++...+++.+.+ |+.++-|..|+.
T Consensus 309 ~~~i~~i~~D~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V--~~i~~d~~g~lWi-Gt~~~Gl~~~~~ 384 (795)
T 4a2l_A 309 QRSVRSIFMDSQGGMWL-GTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVV--SCIVEDKDKNLWI-GTNDGGLNLYNP 384 (795)
T ss_dssp SSCEEEEEECTTSCEEE-EESSSCEEEECGGGGSSEEECCCTTSSSCSCSSE--EEEEECTTSCEEE-EESSSCEEEECT
T ss_pred CCcEEEEEEeCCcCEEE-EECCCCeEEeCCCcccceEEcCCCCCCCCCCCee--EEEEECCCCCEEE-EECCCCeEEEcC
Confidence 35799999999887554 555556888887654332221111 1111223 3445666776554 666767888998
Q ss_pred CCccceeEEeCC------CcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 109 AQRRSVATLQSP------YISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 109 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.+++........ -......++...+ ++..|-.|+.++-|..||.
T Consensus 385 ~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~ 434 (795)
T 4a2l_A 385 ITQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHR 434 (795)
T ss_dssp TTCCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEET
T ss_pred CCCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeC
Confidence 766533221111 0112235666666 5563556677667888775
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=92.96 E-value=1.8 Score=30.86 Aligned_cols=136 Identities=10% Similarity=-0.046 Sum_probs=77.3
Q ss_pred CCCcEEEEEccCCCCCCCCCceee--cccCCeEEEEEcCCCCEEE-EeeCCCeEEEEeccccccceeEeecCCCCceEeE
Q 038702 6 TDGTACIWDLRSMATDKPEPTKVL--SHKRAVHSAYFSPSGSSLA-TTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISS 82 (154)
Q Consensus 6 ~d~~v~vw~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (154)
....|+..++..... .... ..-..+..++|++....++ +-..++.|..+++............... .
T Consensus 13 ~~~~I~~i~l~~~~~-----~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~-----P 82 (628)
T 4a0p_A 13 RRADIRRISLETNNN-----NVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDY-----P 82 (628)
T ss_dssp ETTEEEEEESSCTTC-----EEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSC-----C
T ss_pred eCCcEEEEECCCCCc-----ceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCC-----c
Confidence 456788888875432 1111 2334678999999665554 5456788988888765443333221111 1
Q ss_pred EEEEEcCCC-cEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEc-CCCeEEEeeC
Q 038702 83 FRAIWGWDD-SCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT-GGGQVYVWTS 153 (154)
Q Consensus 83 ~~~~~~~~~-~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~wd~ 153 (154)
..+++.+.+ +++.+-...+.|.+.++.... ...+.. .....+..++.+|..+.++.+-. ..+.|...++
T Consensus 83 ~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~-~~~l~~-~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~ 153 (628)
T 4a0p_A 83 EGMAVDWLGKNLYWADTGTNRIEVSKLDGQH-RQVLVW-KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAM 153 (628)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSTT-CEEEEC-SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred ceEEEEeCCCEEEEEECCCCEEEEEecCCCc-EEEEEe-CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeC
Confidence 134556544 445555566788888886443 233321 12233468889985665555542 2456766654
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=92.68 E-value=1 Score=27.71 Aligned_cols=64 Identities=6% Similarity=-0.109 Sum_probs=39.1
Q ss_pred EEEEcCCCcEEEEEccCCeEEEecCCCccc------eeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 84 RAIWGWDDSCIFIGNMTRTVEVISPAQRRS------VATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 84 ~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.++|+|++.+.+. .+|.++-.+..+.+. -..+- .......-.+.++| ++.+.++ .||.|+-++.
T Consensus 45 ~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG-~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 45 FLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIG-NGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASP 114 (236)
T ss_dssp EEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEE-CSCGGGCSEEEECT-TSCEEEE--ETTEEEEESC
T ss_pred eEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEec-ccccccceEEEECC-CCCEEEe--CCCEEEEeCC
Confidence 6789999886666 778877777654221 12221 11111124678888 7777766 5688877653
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.64 E-value=1.2 Score=28.08 Aligned_cols=101 Identities=11% Similarity=0.013 Sum_probs=51.3
Q ss_pred CCCEEEEeeC---------CCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccC-----CeEEEecC
Q 038702 43 SGSSLATTSF---------DDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMT-----RTVEVISP 108 (154)
Q Consensus 43 ~~~~l~~~~~---------d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----~~i~i~~~ 108 (154)
+++.++.|+. -..+.+||+.+..-...... +...... .++ ..++++++.|+.+ ..+.+||+
T Consensus 149 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~--p~~r~~~--~~~-~~~~~i~v~GG~~~~~~~~~~~~yd~ 223 (306)
T 3ii7_A 149 NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPM--IEARKNH--GLV-FVKDKIFAVGGQNGLGGLDNVEYYDI 223 (306)
T ss_dssp TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCC--SSCCBSC--EEE-EETTEEEEECCEETTEEBCCEEEEET
T ss_pred CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCc--cchhhcc--eEE-EECCEEEEEeCCCCCCCCceEEEeeC
Confidence 5666666654 34478888876643322111 1111111 111 1267777777754 35888998
Q ss_pred CCccc--eeEEeCCCcCCcceEEEecCCCccEEEEEcCC-----CeEEEeeC
Q 038702 109 AQRRS--VATLQSPYISAIPCRFHAHPHQVGTLAGATGG-----GQVYVWTS 153 (154)
Q Consensus 109 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----~~i~~wd~ 153 (154)
.+.+- +..+..... . ..++.. ++.+++.|+.+ ..+.+||+
T Consensus 224 ~~~~W~~~~~~p~~r~-~--~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~ 270 (306)
T 3ii7_A 224 KLNEWKMVSPMPWKGV-T--VKCAAV--GSIVYVLAGFQGVGRLGHILEYNT 270 (306)
T ss_dssp TTTEEEECCCCSCCBS-C--CEEEEE--TTEEEEEECBCSSSBCCEEEEEET
T ss_pred CCCcEEECCCCCCCcc-c--eeEEEE--CCEEEEEeCcCCCeeeeeEEEEcC
Confidence 76532 222221111 1 122222 45778888744 46777876
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=92.26 E-value=1.1 Score=33.49 Aligned_cols=37 Identities=14% Similarity=0.089 Sum_probs=30.8
Q ss_pred CCeEEEEEcCCCCEEEEeeCCCeEEEEecccccccee
Q 038702 33 RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAM 69 (154)
Q Consensus 33 ~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~ 69 (154)
..+.++...++..++++-+.|+++|+|++.+++....
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t 272 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET 272 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEee
Confidence 3567777778888999999999999999998876543
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=92.25 E-value=1.6 Score=28.53 Aligned_cols=31 Identities=13% Similarity=0.163 Sum_probs=23.0
Q ss_pred cCCeEEEEEcCCCCEEEEeeCCCeEEEEecc
Q 038702 32 KRAVHSAYFSPSGSSLATTSFDDTIGIWSGV 62 (154)
Q Consensus 32 ~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~ 62 (154)
-.....|+|.|+|+.++.+...|.|++++..
T Consensus 17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~ 47 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLITLRGGELRHWQAG 47 (353)
T ss_dssp ESSEEEEEECSTTCCEEEEETTTEEEEEETT
T ss_pred CCCcEEEEEcCCCCEEEEEeCCceEEEEeCC
Confidence 4456899999999834444567999998753
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=92.15 E-value=2.3 Score=30.28 Aligned_cols=114 Identities=5% Similarity=-0.107 Sum_probs=66.3
Q ss_pred CCeEEEEEcCCCCEE-EEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEc--cCCeEEEecCC
Q 038702 33 RAVHSAYFSPSGSSL-ATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGN--MTRTVEVISPA 109 (154)
Q Consensus 33 ~~v~~~~~~~~~~~l-~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~d~~i~i~~~~ 109 (154)
.....+++.+.+..| ++-...+.|.+.++.............. ....++..|...+|+... ..+.|...++.
T Consensus 80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~-----~P~~iavdp~~G~lY~tD~g~~~~I~r~~~d 154 (628)
T 4a0p_A 80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLD-----SPRALALDPAEGFMYWTEWGGKPKIDRAAMD 154 (628)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCC-----CEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCC-----CcccEEEccCCCeEEEeCCCCCCEEEEEeCC
Confidence 356788888765544 5555578899999876544333321111 233567788555554444 24567666665
Q ss_pred CccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 110 QRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
... ...+-. ....+..+++++..+.++++-...+.|...|++
T Consensus 155 G~~-~~~l~~--~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~d 196 (628)
T 4a0p_A 155 GSE-RTTLVP--NVGRANGLTIDYAKRRLYWTDLDTNLIESSNML 196 (628)
T ss_dssp SCS-CEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCc-eEEEEC--CCCCcceEEEccccCEEEEEECCCCEEEEEcCC
Confidence 333 233322 223456788888555566666677788887763
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.73 E-value=1.6 Score=27.43 Aligned_cols=103 Identities=12% Similarity=0.031 Sum_probs=52.8
Q ss_pred CCCEEEEeeCC-----CeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccC-----CeEEEecCCCcc
Q 038702 43 SGSSLATTSFD-----DTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMT-----RTVEVISPAQRR 112 (154)
Q Consensus 43 ~~~~l~~~~~d-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----~~i~i~~~~~~~ 112 (154)
+++.++.|+.+ ..+.+||+.+..-...... +....... ++ ..++++++.|+.+ ..+.+||+.+.+
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~--p~~r~~~~--~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPM--ATKRSGAG--VA-LLNDHIYVVGGFDGTAHLSSVEAYNIRTDS 233 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCC--SSCCBSCE--EE-EETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCC--Ccccccce--EE-EECCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence 66677777654 4578888876543322111 11111111 11 1256777787764 468899988654
Q ss_pred ceeEEeCCCcCCcceEEEecCCCccEEEEEcCC-----CeEEEeeC
Q 038702 113 SVATLQSPYISAIPCRFHAHPHQVGTLAGATGG-----GQVYVWTS 153 (154)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----~~i~~wd~ 153 (154)
-...-..+..... ..++.. ++.+++.|+.+ ..+.+||+
T Consensus 234 W~~~~~~p~~r~~-~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~ 276 (301)
T 2vpj_A 234 WTTVTSMTTPRCY-VGATVL--RGRLYAIAGYDGNSLLSSIECYDP 276 (301)
T ss_dssp EEEECCCSSCCBS-CEEEEE--TTEEEEECCBCSSSBEEEEEEEET
T ss_pred EEECCCCCCcccc-eeEEEE--CCEEEEEcCcCCCcccccEEEEcC
Confidence 3222111111111 222222 45677777755 35777776
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=91.68 E-value=3.7 Score=31.67 Aligned_cols=139 Identities=11% Similarity=0.093 Sum_probs=71.2
Q ss_pred cCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEE
Q 038702 5 STDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSF 83 (154)
Q Consensus 5 ~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (154)
+...+|++|++...+. .... .+-..|..+.....+++++.|..-..+.+...+................++.
T Consensus 901 ~ig~~l~vy~l~~~~~-----L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vt-- 973 (1158)
T 3ei3_A 901 SINSTVRLYEWTTEKE-----LRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMS-- 973 (1158)
T ss_dssp EETTEEEEEEECTTSC-----EEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEE--
T ss_pred EcCCEEEEEECCCCce-----EEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEE--
Confidence 3457899999976442 2211 2222233333333678899998877777766543322222222222333443
Q ss_pred EEEEcCCCcEEEEEccCCeEEEecCCCc-------cceeEEeCCCcCCcceEEE---ecCCC--------ccEEEEEcCC
Q 038702 84 RAIWGWDDSCIFIGNMTRTVEVISPAQR-------RSVATLQSPYISAIPCRFH---AHPHQ--------VGTLAGATGG 145 (154)
Q Consensus 84 ~~~~~~~~~~l~~~~~d~~i~i~~~~~~-------~~~~~~~~~~~~~~~~~~~---~~~~~--------~~~l~~~~~d 145 (154)
++.+- +...++.+..+|++.+...... +.+.....-+.+....++. +.+.. ...++.++.+
T Consensus 974 a~~~l-d~~t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~ 1052 (1158)
T 3ei3_A 974 AVEIL-DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVN 1052 (1158)
T ss_dssp EEEEE-ETTEEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEETT
T ss_pred EEEEE-ccCcEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEecC
Confidence 33343 2346777889999998865431 1221111112222223443 22211 3457788889
Q ss_pred CeEEEe
Q 038702 146 GQVYVW 151 (154)
Q Consensus 146 ~~i~~w 151 (154)
|.|.+.
T Consensus 1053 GsIg~l 1058 (1158)
T 3ei3_A 1053 GMIGLV 1058 (1158)
T ss_dssp SCEEEE
T ss_pred CEEEEE
Confidence 988764
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.61 E-value=1.6 Score=27.40 Aligned_cols=104 Identities=15% Similarity=0.103 Sum_probs=52.2
Q ss_pred CCCEEEEeeCC-------CeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccC-----CeEEEecCCC
Q 038702 43 SGSSLATTSFD-------DTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMT-----RTVEVISPAQ 110 (154)
Q Consensus 43 ~~~~l~~~~~d-------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----~~i~i~~~~~ 110 (154)
+++.++.|+.+ ..+.+||+.+.+-...... +...... .++ ..++.+++.|+.+ ..+.+||+.+
T Consensus 155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~--p~~r~~~--~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~ 229 (302)
T 2xn4_A 155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEM--STRRSGA--GVG-VLNNLLYAVGGHDGPLVRKSVEVYDPTT 229 (302)
T ss_dssp TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCC--SSCCBSC--EEE-EETTEEEEECCBSSSSBCCCEEEEETTT
T ss_pred CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCC--ccccccc--cEE-EECCEEEEECCCCCCcccceEEEEeCCC
Confidence 56666666542 3477888876543322111 1111111 111 2267777888764 3688999886
Q ss_pred ccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCC-----eEEEeeCC
Q 038702 111 RRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGG-----QVYVWTSD 154 (154)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-----~i~~wd~~ 154 (154)
.+-.. +...........++.. ++.+++.|+.++ .+.+||++
T Consensus 230 ~~W~~-~~~~~~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~ 275 (302)
T 2xn4_A 230 NAWRQ-VADMNMCRRNAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPT 275 (302)
T ss_dssp TEEEE-ECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETT
T ss_pred CCEee-CCCCCCccccCeEEEE--CCEEEEECCcCCCcccccEEEEcCC
Confidence 54322 1111111111222222 457777777553 47888763
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=91.59 E-value=1.9 Score=28.23 Aligned_cols=35 Identities=14% Similarity=-0.001 Sum_probs=27.0
Q ss_pred ccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccc
Q 038702 31 HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFE 65 (154)
Q Consensus 31 ~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~ 65 (154)
.-.....|+|.|+|+.+++--..|.|++++.....
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~ 64 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGR 64 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCc
Confidence 34567899999999987777558999998865443
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.57 E-value=0.36 Score=31.50 Aligned_cols=108 Identities=10% Similarity=-0.037 Sum_probs=54.5
Q ss_pred CEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEE-ccCCeEEEecCCCccceeEEeCCCc-
Q 038702 45 SSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIG-NMTRTVEVISPAQRRSVATLQSPYI- 122 (154)
Q Consensus 45 ~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~i~~~~~~~~~~~~~~~~~- 122 (154)
..++.++.||.|.-.|..+++..-.+.... ....+..-......++..++.. +.||.|..++..+|.....+.....
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~-~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPEN-FQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGG-SCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCc-cCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 467888899999998988777664443321 0101110000000122334333 5799999999887754433331110
Q ss_pred CCcceEEE----e-cC---CCccEEEEEcCCCeEEEeeC
Q 038702 123 SAIPCRFH----A-HP---HQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 123 ~~~~~~~~----~-~~---~~~~~l~~~~~d~~i~~wd~ 153 (154)
...+.... . .+ ..+..+.+|+.+|++...|+
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~ 128 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINM 128 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEET
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEEC
Confidence 00001100 0 00 02356777888888877665
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=91.49 E-value=2.7 Score=29.83 Aligned_cols=115 Identities=9% Similarity=-0.054 Sum_probs=63.5
Q ss_pred CCeEEEEEcCC-CCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEc--cCCeEEEecCC
Q 038702 33 RAVHSAYFSPS-GSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGN--MTRTVEVISPA 109 (154)
Q Consensus 33 ~~v~~~~~~~~-~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~d~~i~i~~~~ 109 (154)
.....+++... +++..+-+..+.|.+.++.......+..... .....+++.|...+|+... ....|...++.
T Consensus 392 ~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l-----~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~d 466 (619)
T 3s94_A 392 AHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDL-----EEPRAIVLDPMVGYMYWTDWGEIPKIERAALD 466 (619)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTC-----CSEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred CCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCC-----CCeeeEEEEcCCCcEEEecCCCCCEEEEEccC
Confidence 45678899874 4455555567889999887654433332111 1233567788644443333 23455555554
Q ss_pred CccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 110 QRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
|.....+.. ..-..+..+++++..+.++++-+..+.|...+++
T Consensus 467 -G~~~~~l~~-~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~d 509 (619)
T 3s94_A 467 -GSDRVVLVN-TSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTD 509 (619)
T ss_dssp -SCSCEEEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEESS
T ss_pred -CCccEEEEe-CCCCCCeeeEEcccCCEEEEEECCCCEEEEEecC
Confidence 332233321 2223446788887455555555666778777753
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=91.04 E-value=2.2 Score=30.26 Aligned_cols=69 Identities=12% Similarity=0.099 Sum_probs=46.7
Q ss_pred EEEcCCCcEEEEEc-cCCeEEEecCCCccc---------eeEE-eCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 85 AIWGWDDSCIFIGN-MTRTVEVISPAQRRS---------VATL-QSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 85 ~~~~~~~~~l~~~~-~d~~i~i~~~~~~~~---------~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+..+|||++++.++ .+.++.++|.+.... ...+ .....+.-+...+|++ +++...+---|..|.-|++
T Consensus 328 v~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~-~G~aYTtlfidSqvvkWni 406 (638)
T 3sbq_A 328 CNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDG-RGNAYTTLFIDSQVVKWNM 406 (638)
T ss_dssp EEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEETTTTEEEEEEH
T ss_pred eeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECC-CCceEeeeeecceEEEEec
Confidence 56799999887766 567899999873211 0111 1122233346789999 7777777778999999986
Q ss_pred C
Q 038702 154 D 154 (154)
Q Consensus 154 ~ 154 (154)
+
T Consensus 407 ~ 407 (638)
T 3sbq_A 407 E 407 (638)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.86 E-value=0.93 Score=34.62 Aligned_cols=34 Identities=12% Similarity=0.209 Sum_probs=28.6
Q ss_pred EEEcCCCcEEEEEccCCeEEEecCCCccceeEEe
Q 038702 85 AIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQ 118 (154)
Q Consensus 85 ~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 118 (154)
++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 243 ~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 243 MIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 3455678899999999999999999998887754
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=90.57 E-value=5.6 Score=31.77 Aligned_cols=139 Identities=11% Similarity=0.126 Sum_probs=73.6
Q ss_pred CCcEEEEEccCCCCCCCCCceee-cc----cCCeEEEEEcCCCCEEEEee-------CCCeEEEEeccccccceeEeecC
Q 038702 7 DGTACIWDLRSMATDKPEPTKVL-SH----KRAVHSAYFSPSGSSLATTS-------FDDTIGIWSGVNFENTAMIHHNN 74 (154)
Q Consensus 7 d~~v~vw~~~~~~~~~~~~~~~~-~~----~~~v~~~~~~~~~~~l~~~~-------~d~~v~~~~~~~~~~~~~~~~~~ 74 (154)
+..|.-|++..... +.+.+ .| ...|..-..+++.++++..+ ..|.+.+|..+......+-+|..
T Consensus 124 ~~aVyHW~~~~~s~----P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~ 199 (1630)
T 1xi4_A 124 DNAVYHWSMEGESQ----PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAA 199 (1630)
T ss_pred CCeEEEeccCCCCc----cHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhHh
Confidence 45688899865332 44333 33 34666777788888776433 35788888887665543333322
Q ss_pred CCCceEeEEEEEEcCCCc-EEEEEcc---CCeEEEecCCCc---cceeE-------EeCCCcCCcceEEEecCCCccEEE
Q 038702 75 QTGRWISSFRAIWGWDDS-CIFIGNM---TRTVEVISPAQR---RSVAT-------LQSPYISAIPCRFHAHPHQVGTLA 140 (154)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~-~l~~~~~---d~~i~i~~~~~~---~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~ 140 (154)
.. ..+.+.-.+... .++.+.. .+.++|.++... .+... +........+..+..++ ....+.
T Consensus 200 ~F----~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~-k~g~iy 274 (1630)
T 1xi4_A 200 SF----AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVF 274 (1630)
T ss_pred hh----heeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecc-ccCEEE
Confidence 10 001111111111 2222211 268888887532 11111 11111233345677777 445666
Q ss_pred EEcCCCeEEEeeCC
Q 038702 141 GATGGGQVYVWTSD 154 (154)
Q Consensus 141 ~~~~d~~i~~wd~~ 154 (154)
.-+.-|.|.++|+.
T Consensus 275 ~itk~G~~~~~d~~ 288 (1630)
T 1xi4_A 275 LITKYGYIHLYDLE 288 (1630)
T ss_pred EEecCceEEEEecc
Confidence 77888999999973
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=90.42 E-value=3.8 Score=29.56 Aligned_cols=70 Identities=9% Similarity=0.074 Sum_probs=38.7
Q ss_pred CCCCEEEEeeCCC--eEEEEeccccccceeEeec-CCCCceEeEEEEEEcCC-CcEEEEEcc--C-----CeEEEecCCC
Q 038702 42 PSGSSLATTSFDD--TIGIWSGVNFENTAMIHHN-NQTGRWISSFRAIWGWD-DSCIFIGNM--T-----RTVEVISPAQ 110 (154)
Q Consensus 42 ~~~~~l~~~~~d~--~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~l~~~~~--d-----~~i~i~~~~~ 110 (154)
.++..++.|+.++ .+.+||..+..-....... .+....... .+.+..+ +..++.|+. + +.+.+||+.+
T Consensus 499 ~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~-a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~ 577 (695)
T 2zwa_A 499 PDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSA-GLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDA 577 (695)
T ss_dssp TTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSC-EEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECT
T ss_pred cCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCccccee-EEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccC
Confidence 4778888887654 6888988775432221100 011111111 1233444 677777775 2 4588999887
Q ss_pred cc
Q 038702 111 RR 112 (154)
Q Consensus 111 ~~ 112 (154)
.+
T Consensus 578 ~~ 579 (695)
T 2zwa_A 578 EN 579 (695)
T ss_dssp TC
T ss_pred Cc
Confidence 66
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=90.40 E-value=2.6 Score=27.57 Aligned_cols=64 Identities=9% Similarity=-0.101 Sum_probs=33.5
Q ss_pred CCeEEEEEcCC---CCEEEEeeC----C----CeEEEEeccccc-----cceeEe-ecCCCCceEeEEEEEEcCCCcEEE
Q 038702 33 RAVHSAYFSPS---GSSLATTSF----D----DTIGIWSGVNFE-----NTAMIH-HNNQTGRWISSFRAIWGWDDSCIF 95 (154)
Q Consensus 33 ~~v~~~~~~~~---~~~l~~~~~----d----~~v~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~ 95 (154)
.....|+++|+ +..|+.+.. + ..|..++..... ...++. ......+... .++|.|+|.+++
T Consensus 73 ~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~--~l~~~pDG~Lyv 150 (354)
T 3a9g_A 73 AGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGG--RIRFGPDGMLYI 150 (354)
T ss_dssp CSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCC--CEEECTTSCEEE
T ss_pred CceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCc--eEEECCCCcEEE
Confidence 46789999997 444444332 3 567777765431 111111 1111111112 467899998776
Q ss_pred EEc
Q 038702 96 IGN 98 (154)
Q Consensus 96 ~~~ 98 (154)
+-+
T Consensus 151 t~G 153 (354)
T 3a9g_A 151 TTG 153 (354)
T ss_dssp ECC
T ss_pred EEC
Confidence 643
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=90.10 E-value=4.5 Score=32.24 Aligned_cols=76 Identities=12% Similarity=0.134 Sum_probs=41.3
Q ss_pred cCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccc-eeE-eecCCCCceEeEEEEEEcCCCcEEEEEc-------cCCe
Q 038702 32 KRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT-AMI-HHNNQTGRWISSFRAIWGWDDSCIFIGN-------MTRT 102 (154)
Q Consensus 32 ~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~d~~ 102 (154)
..+|.--+|-..... +-. .+..|.-|++.....+ ..+ .+..-.+ ...+....+++.++++..| -.|.
T Consensus 105 ~e~VvfWkWis~~~l-~lV-T~~aVyHW~~~~~s~P~k~fdR~~~L~~--~QIinY~~d~~~kW~~l~gi~~~~~~v~G~ 180 (1630)
T 1xi4_A 105 TDDVTFWKWISLNTV-ALV-TDNAVYHWSMEGESQPVKMFDRHSSLAG--CQIINYRTDAKQKWLLLTGISAQQNRVVGA 180 (1630)
T ss_pred CCCceEEEecCCCee-EEE-cCCeEEEeccCCCCccHHHHhcchhccc--CeeEEeeeCCCCCeEEEEeeccCCCcccce
Confidence 456777777544332 222 2356888998754333 222 2222222 2344455677777665433 3478
Q ss_pred EEEecCCCc
Q 038702 103 VEVISPAQR 111 (154)
Q Consensus 103 i~i~~~~~~ 111 (154)
+.+|..+.+
T Consensus 181 mQLyS~er~ 189 (1630)
T 1xi4_A 181 MQLYSVDRK 189 (1630)
T ss_pred eeeeecccc
Confidence 888887754
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.96 E-value=2.4 Score=26.57 Aligned_cols=103 Identities=9% Similarity=-0.025 Sum_probs=52.2
Q ss_pred CCCEEEEeeCC-----CeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccC-----CeEEEecCCCcc
Q 038702 43 SGSSLATTSFD-----DTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMT-----RTVEVISPAQRR 112 (154)
Q Consensus 43 ~~~~l~~~~~d-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----~~i~i~~~~~~~ 112 (154)
++..++.|+.+ ..+.+||+.+.+-....... ....... ++ ..++++++.|+.+ ..+.+||+.+.+
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p--~~r~~~~--~~-~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~ 186 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQ--TAREGAG--LV-VASGVIYCLGGYDGLNILNSVEKYDPHTGH 186 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECS--SCCBSCE--EE-EETTEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCC--CCcccce--EE-EECCEEEEECCCCCCcccceEEEEeCCCCc
Confidence 56677777653 35788888765433322111 1111111 11 1267777777754 458889987654
Q ss_pred ceeEEeCCCcCCcceEEEecCCCccEEEEEcCC-----CeEEEeeC
Q 038702 113 SVATLQSPYISAIPCRFHAHPHQVGTLAGATGG-----GQVYVWTS 153 (154)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----~~i~~wd~ 153 (154)
-...-..+. ......+... ++.+++.|+.+ ..+.+||+
T Consensus 187 W~~~~~~p~-~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~ 229 (301)
T 2vpj_A 187 WTNVTPMAT-KRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNI 229 (301)
T ss_dssp EEEECCCSS-CCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEET
T ss_pred EEeCCCCCc-ccccceEEEE--CCEEEEEeCCCCCcccceEEEEeC
Confidence 322211111 1111222222 45777777754 35777776
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=89.88 E-value=4.4 Score=29.47 Aligned_cols=114 Identities=10% Similarity=0.016 Sum_probs=59.7
Q ss_pred cCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCc
Q 038702 32 KRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQR 111 (154)
Q Consensus 32 ~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~ 111 (154)
...|.++...+++++. .|+.++-+..++..+............... .+.++...+++.+.+ |+.++-+..++..++
T Consensus 362 ~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~--~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~ 437 (781)
T 3v9f_A 362 NKVVSSVCDDGQGKLW-IGTDGGGINVFENGKRVAIYNKENRELLSN--SVLCSLKDSEGNLWF-GTYLGNISYYNTRLK 437 (781)
T ss_dssp SSCEEEEEECTTSCEE-EEEBSSCEEEEETTEEEEECC-----CCCS--BEEEEEECTTSCEEE-EETTEEEEEECSSSC
T ss_pred CcceEEEEEcCCCCEE-EEeCCCcEEEEECCCCeEEEccCCCCCCCc--ceEEEEECCCCCEEE-EeccCCEEEEcCCCC
Confidence 3568999988887755 445445578888765432221111111112 233445566666555 566667888888766
Q ss_pred cceeEEeCC-CcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 112 RSVATLQSP-YISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 112 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+.. .+... .......++...+ ++.+.+ |+. +-|..+|.
T Consensus 438 ~~~-~~~~~~~~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~ 476 (781)
T 3v9f_A 438 KFQ-IIELEKNELLDVRVFYEDK-NKKIWI-GTH-AGVFVIDL 476 (781)
T ss_dssp EEE-ECCSTTTCCCCEEEEEECT-TSEEEE-EET-TEEEEEES
T ss_pred cEE-EeccCCCCCCeEEEEEECC-CCCEEE-EEC-CceEEEeC
Confidence 432 22211 1112224566665 444444 444 45777764
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=89.50 E-value=6.1 Score=30.56 Aligned_cols=112 Identities=11% Similarity=0.002 Sum_probs=60.2
Q ss_pred CeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCC------CcEEEEEcc-CCeEEEe
Q 038702 34 AVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWD------DSCIFIGNM-TRTVEVI 106 (154)
Q Consensus 34 ~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~-d~~i~i~ 106 (154)
.|...+.+ +.+++.++ ++.+.++.+..++........ -...+.+ +.+.|. +.+++.|.. |++++|+
T Consensus 515 ~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~~--l~~evsc--l~i~~~~~~~~~s~~~aVg~~~d~tv~I~ 587 (1158)
T 3ei3_A 515 NISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHTE--MEHEVAC--LDITPLGDSNGLSPLCAIGLWTDISARIL 587 (1158)
T ss_dssp CCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEEE--CSSCEEE--EECCCCSSSTTCCSEEEEEETTTTEEEEE
T ss_pred EEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeecccC--CCCceEE--EEeecCCCCcccccEEEEEECCCCEEEEE
Confidence 45555543 33555554 567777777654322211111 1222333 344432 468999996 9999999
Q ss_pred cCCCccceeEEeCCCcCCcceEEEecC-CCccEEEEEcCCCeEEEeeC
Q 038702 107 SPAQRRSVATLQSPYISAIPCRFHAHP-HQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~d~~i~~wd~ 153 (154)
++.+.+.+....-.. ...+.++.... ....+|..|-.||.+..+.+
T Consensus 588 sL~~l~~~~~~~L~~-~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~ 634 (1158)
T 3ei3_A 588 KLPSFELLHKEMLGG-EIIPRSILMTTFESSHYLLCALGDGALFYFGL 634 (1158)
T ss_dssp ETTTCCEEEEEECCS-SCCEEEEEEEEETTEEEEEEEETTSEEEEEEE
T ss_pred ECCCCCeEEEEECCC-CCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEE
Confidence 998766554333211 11222222211 13457888888998765543
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.01 E-value=2.9 Score=26.26 Aligned_cols=65 Identities=9% Similarity=-0.050 Sum_probs=36.7
Q ss_pred CCCEEEEeeCC----CeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccC------CeEEEecCCCcc
Q 038702 43 SGSSLATTSFD----DTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMT------RTVEVISPAQRR 112 (154)
Q Consensus 43 ~~~~l~~~~~d----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------~~i~i~~~~~~~ 112 (154)
++..++.|+.+ ..+.+||+.+.+-....... ....-.. ++ ..++++++.|+.+ ..+.+||..+.+
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p--~~r~~~~--~~-~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 129 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP--TPRDSLA--AC-AAEGKIYTSGGSEVGNSALYLFECYDTRTES 129 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS--SCCBSCE--EE-EETTEEEEECCBBTTBSCCCCEEEEETTTTE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC--cccccee--EE-EECCEEEEECCCCCCCcEeeeEEEEeCCCCc
Confidence 56677777754 56888888776433222111 1111111 11 2267777788765 458889988654
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=88.96 E-value=4.2 Score=27.98 Aligned_cols=133 Identities=8% Similarity=0.037 Sum_probs=74.8
Q ss_pred CCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCC---CEEEEeeC---CCeEEEEecccc--cc-c---eeE---e
Q 038702 7 DGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSG---SSLATTSF---DDTIGIWSGVNF--EN-T---AMI---H 71 (154)
Q Consensus 7 d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~---d~~v~~~~~~~~--~~-~---~~~---~ 71 (154)
.|.+.+|..+.+. ...+.+|.+.-..+...-+. +.|..+.. .+.+++.++... .. . ... .
T Consensus 178 ~G~mQLYS~er~~-----sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~f 252 (494)
T 1bpo_A 178 VGAMQLYSVDRKV-----SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFF 252 (494)
T ss_dssp EEEEEEEESTTCC-----EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCC
T ss_pred cceEEEeeccccc-----cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeC
Confidence 4667788876543 34445887665555553221 24444443 378999998654 11 1 011 1
Q ss_pred ecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEE
Q 038702 72 HNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVY 149 (154)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 149 (154)
....... -...+..++.-..+..-+.-|.+++||++++.++..-+-....+. . -+.+...+ -++.....|.|.
T Consensus 253 ppe~~~D--FPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF-~-t~~~~~~~-Gi~~Vnr~GqVl 325 (494)
T 1bpo_A 253 PPEAQND--FPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF-V-TAPHEATA-GIIGVNRKGQVL 325 (494)
T ss_dssp CTTSTTC--CEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE-E-EEEETTTT-EEEEEETTCEEE
T ss_pred CcccccC--ceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceE-E-ecccCCCC-cEEEEccCceEE
Confidence 1111111 123456677777888888999999999999999887764333332 2 23333233 344444666654
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.52 E-value=3.2 Score=26.05 Aligned_cols=103 Identities=14% Similarity=-0.006 Sum_probs=50.6
Q ss_pred CCCEEEEeeCCC-----eEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccC-------CeEEEecCCC
Q 038702 43 SGSSLATTSFDD-----TIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMT-------RTVEVISPAQ 110 (154)
Q Consensus 43 ~~~~l~~~~~d~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-------~~i~i~~~~~ 110 (154)
++..++.|+.++ .+.+||+.+.+-...... +...... .++ ..++++++.|+.+ ..+.+||+.+
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~--p~~r~~~--~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~ 182 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPM--NTRRSSV--GVG-VVGGLLYAVGGYDVASRQCLSTVECYNATT 182 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCC--SSCCBSC--EEE-EETTEEEEECCEETTTTEECCCEEEEETTT
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCC--CCcccCc--eEE-EECCEEEEEeCCCCCCCccccEEEEEeCCC
Confidence 566777776553 467788766543222111 1111111 111 1256777777643 3488899876
Q ss_pred ccceeEEeCCCcCCcceEEEecCCCccEEEEEcCC-----CeEEEeeC
Q 038702 111 RRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGG-----GQVYVWTS 153 (154)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----~~i~~wd~ 153 (154)
.+-...-..+. ......++.. ++.+++.|+.+ ..+.+||+
T Consensus 183 ~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~ 227 (302)
T 2xn4_A 183 NEWTYIAEMST-RRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDP 227 (302)
T ss_dssp TEEEEECCCSS-CCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEET
T ss_pred CcEEECCCCcc-ccccccEEEE--CCEEEEECCCCCCcccceEEEEeC
Confidence 54322111111 1111222222 45777777754 35777776
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=87.81 E-value=3.7 Score=26.01 Aligned_cols=65 Identities=12% Similarity=0.102 Sum_probs=34.3
Q ss_pred CCCEEEEeeC------CCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccC-----CeEEEecCCCc
Q 038702 43 SGSSLATTSF------DDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMT-----RTVEVISPAQR 111 (154)
Q Consensus 43 ~~~~l~~~~~------d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----~~i~i~~~~~~ 111 (154)
++..++.|+. -..+.+||+.+.+-...... +...... .++ ..++++++.|+.+ ..+.+||+.+.
T Consensus 158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~--p~~r~~~--~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 232 (318)
T 2woz_A 158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPM--KTPRSMF--GVA-IHKGKIVIAGGVTEDGLSASVEAFDLKTN 232 (318)
T ss_dssp TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCC--SSCCBSC--EEE-EETTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCC--CCCcccc--eEE-EECCEEEEEcCcCCCCccceEEEEECCCC
Confidence 5666676654 23588888876543222111 1111111 111 1256777777643 35778888765
Q ss_pred c
Q 038702 112 R 112 (154)
Q Consensus 112 ~ 112 (154)
+
T Consensus 233 ~ 233 (318)
T 2woz_A 233 K 233 (318)
T ss_dssp C
T ss_pred e
Confidence 4
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=87.62 E-value=3.8 Score=25.87 Aligned_cols=101 Identities=10% Similarity=0.029 Sum_probs=50.4
Q ss_pred CCCEEEEeeCC-----CeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccC-----CeEEEecCCCcc
Q 038702 43 SGSSLATTSFD-----DTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMT-----RTVEVISPAQRR 112 (154)
Q Consensus 43 ~~~~l~~~~~d-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----~~i~i~~~~~~~ 112 (154)
++..++.|+.+ ..+.+||+.+.+-...... +....... ++. .++.+++.|+.+ ..+.+||+.+.+
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~--p~~r~~~~--~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 195 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPM--LTRRIGVG--VAV-LNRLLYAVGGFDGTNRLNSAECYYPERNE 195 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCC--SSCCBSCE--EEE-ETTEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCC--CccccceE--EEE-ECCEEEEEeCCCCCCcCceEEEEeCCCCe
Confidence 56677776643 3577888876543222111 11111111 111 267777777754 458888887654
Q ss_pred c--eeEEeCCCcCCcceEEEecCCCccEEEEEcCC-----CeEEEeeC
Q 038702 113 S--VATLQSPYISAIPCRFHAHPHQVGTLAGATGG-----GQVYVWTS 153 (154)
Q Consensus 113 ~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----~~i~~wd~ 153 (154)
- +..+... .....++.. ++.+++.|+.+ ..+.+||+
T Consensus 196 W~~~~~~p~~---r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~ 238 (308)
T 1zgk_A 196 WRMITAMNTI---RSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDV 238 (308)
T ss_dssp EEECCCCSSC---CBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEET
T ss_pred EeeCCCCCCc---cccceEEEE--CCEEEEEeCCCCCCccceEEEEeC
Confidence 2 2222111 111122222 45677777654 45777776
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.55 E-value=3.8 Score=25.90 Aligned_cols=95 Identities=15% Similarity=0.041 Sum_probs=46.3
Q ss_pred CCCEEEEeeC-C-----CeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCC-----eEEEecCCCc
Q 038702 43 SGSSLATTSF-D-----DTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTR-----TVEVISPAQR 111 (154)
Q Consensus 43 ~~~~l~~~~~-d-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-----~i~i~~~~~~ 111 (154)
+++.++.|+. + ..+.+||+.+.+-...... +....... ++ ..++++++.|+.++ .+.+||+.+.
T Consensus 148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~--p~~r~~~~--~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPM--QTARSLFG--AT-VHDGRIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCC--SSCCBSCE--EE-EETTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCC--CCchhceE--EE-EECCEEEEEeccCCCCccceEEEEECCCC
Confidence 5667777765 2 3588888876542221111 11111111 11 22677777777654 5888998765
Q ss_pred cceeEEeCCCcCCcceEEEecCCCccEEEEEcCC
Q 038702 112 RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGG 145 (154)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 145 (154)
+-...-..+. ......++.. ++.+++.|+.+
T Consensus 223 ~W~~~~~~p~-~r~~~~~~~~--~~~l~v~GG~~ 253 (315)
T 4asc_A 223 KWAPFEAFPQ-ERSSLSLVSL--VGTLYAIGGFA 253 (315)
T ss_dssp EEEEECCCSS-CCBSCEEEEE--TTEEEEEEEEE
T ss_pred eEEECCCCCC-cccceeEEEE--CCEEEEECCcc
Confidence 4322211111 1111222222 45677777753
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=86.07 E-value=6.4 Score=26.95 Aligned_cols=31 Identities=23% Similarity=0.130 Sum_probs=23.5
Q ss_pred cCCeEEEEEcCCCC-EEEEeeCCCeEEEEecc
Q 038702 32 KRAVHSAYFSPSGS-SLATTSFDDTIGIWSGV 62 (154)
Q Consensus 32 ~~~v~~~~~~~~~~-~l~~~~~d~~v~~~~~~ 62 (154)
-.....|+|.|++. .++.+...|.|++++..
T Consensus 13 L~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 13 LRQPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp ESSEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CCCceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 34567999999996 45556688999999754
|
| >3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A | Back alignment and structure |
|---|
Probab=85.15 E-value=1.2 Score=32.25 Aligned_cols=31 Identities=0% Similarity=0.069 Sum_probs=26.7
Q ss_pred CCCcEEEEEccCCeEEEecCCCccceeEEeC
Q 038702 89 WDDSCIFIGNMTRTVEVISPAQRRSVATLQS 119 (154)
Q Consensus 89 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~ 119 (154)
.+..++++-+.|.++|+|++++++++.+..-
T Consensus 229 ~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 229 FHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp ETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred cCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3578999999999999999999998877654
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=85.01 E-value=7.1 Score=26.57 Aligned_cols=59 Identities=14% Similarity=0.165 Sum_probs=34.4
Q ss_pred EEEEEcCCCcEEEEEccCCeEEEecCCCccce--eEEeCC-----CcCCcceEEEecCC---CccEEEEE
Q 038702 83 FRAIWGWDDSCIFIGNMTRTVEVISPAQRRSV--ATLQSP-----YISAIPCRFHAHPH---QVGTLAGA 142 (154)
Q Consensus 83 ~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~--~~~~~~-----~~~~~~~~~~~~~~---~~~~l~~~ 142 (154)
..++|.|+|+++++-...+.|++++..+++.. ..+... .... ...++++|+ ++.+.++-
T Consensus 30 ~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~G-llgia~~Pdf~~~g~lYv~~ 98 (454)
T 1cru_A 30 HALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNG-LLGFAFHPDFKNNPYIYISG 98 (454)
T ss_dssp EEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCS-EEEEEECTTTTTSCEEEEEE
T ss_pred eEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCc-eeEEEECCCcCcCCEEEEEE
Confidence 46789999998877655557888876555432 222110 1122 257899984 44444444
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=84.56 E-value=6.4 Score=25.63 Aligned_cols=68 Identities=15% Similarity=0.046 Sum_probs=38.1
Q ss_pred EEEEEcCCCcEEEEEccCCeEEEecCCCccc--eeEEeC-CCcCCcceEEEecCC---CccEEEEEcCC-----CeEEEe
Q 038702 83 FRAIWGWDDSCIFIGNMTRTVEVISPAQRRS--VATLQS-PYISAIPCRFHAHPH---QVGTLAGATGG-----GQVYVW 151 (154)
Q Consensus 83 ~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~---~~~~l~~~~~d-----~~i~~w 151 (154)
..++|.|+|+++++ ..++.|++++ .++. +..+.. .........++++|+ ++.++++-... ..|..+
T Consensus 34 ~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~ 110 (352)
T 2ism_A 34 WALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRL 110 (352)
T ss_dssp EEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEE
T ss_pred eEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEE
Confidence 36789999986655 4568999888 3332 221110 111223468899983 24555544432 556666
Q ss_pred eC
Q 038702 152 TS 153 (154)
Q Consensus 152 d~ 153 (154)
++
T Consensus 111 ~~ 112 (352)
T 2ism_A 111 RH 112 (352)
T ss_dssp EE
T ss_pred Ee
Confidence 53
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=84.34 E-value=5.8 Score=25.00 Aligned_cols=103 Identities=12% Similarity=-0.023 Sum_probs=51.8
Q ss_pred CCCEEEEeeCC-----CeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccC-----CeEEEecCCCcc
Q 038702 43 SGSSLATTSFD-----DTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMT-----RTVEVISPAQRR 112 (154)
Q Consensus 43 ~~~~l~~~~~d-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----~~i~i~~~~~~~ 112 (154)
++..++.|+.+ ..+.+||+.+.+-...... +...... .++. -++.+++.|+.+ ..+.+||+.+.+
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~--p~~r~~~--~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 242 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAM--NTIRSGA--GVCV-LHNCIYAAGGYDGQDQLNSVERYDVETET 242 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCC--SSCCBSC--EEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCC--CCccccc--eEEE-ECCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence 56677777654 4578888876543222111 1111111 1111 267777787764 458899987654
Q ss_pred ceeEEeCCCcCCcceEEEecCCCccEEEEEcCC-----CeEEEeeC
Q 038702 113 SVATLQSPYISAIPCRFHAHPHQVGTLAGATGG-----GQVYVWTS 153 (154)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----~~i~~wd~ 153 (154)
-.. +...........++.. ++.+++.|+.+ ..+.+||+
T Consensus 243 W~~-~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~ 285 (308)
T 1zgk_A 243 WTF-VAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDP 285 (308)
T ss_dssp EEE-CCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEET
T ss_pred EEE-CCCCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcC
Confidence 221 1111111111222222 45777777743 35777776
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=83.01 E-value=6.8 Score=24.79 Aligned_cols=103 Identities=10% Similarity=0.029 Sum_probs=49.3
Q ss_pred CCCEEEEeeCC-------CeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccC------CeEEEecCC
Q 038702 43 SGSSLATTSFD-------DTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMT------RTVEVISPA 109 (154)
Q Consensus 43 ~~~~l~~~~~d-------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------~~i~i~~~~ 109 (154)
++..++.|+.+ ..+.+||+.+.+-...... +....-. .++ ..++.+++.|+.+ ..+.+||+.
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~--p~~r~~~--~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~ 183 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNL--PIKVYGH--NVI-SHNGMIYCLGGKTDDKKCTNRVFIYNPK 183 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCC--SSCEESC--EEE-EETTEEEEECCEESSSCBCCCEEEEETT
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCC--CCccccc--EEE-EECCEEEEEcCCCCCCCccceEEEEcCC
Confidence 56666777653 3477788776543222111 1111111 112 2367777777642 358899988
Q ss_pred CccceeEEeCCCcCCcceEEEecCCCccEEEEEcCC-----CeEEEeeC
Q 038702 110 QRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGG-----GQVYVWTS 153 (154)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----~~i~~wd~ 153 (154)
+.+-...-..+. ......++.. ++.+++.|+.+ ..+.+||+
T Consensus 184 ~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~ 229 (318)
T 2woz_A 184 KGDWKDLAPMKT-PRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDL 229 (318)
T ss_dssp TTEEEEECCCSS-CCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEET
T ss_pred CCEEEECCCCCC-CcccceEEEE--CCEEEEEcCcCCCCccceEEEEEC
Confidence 654222111111 1111122222 45677777643 24566765
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=82.67 E-value=7.5 Score=25.02 Aligned_cols=54 Identities=7% Similarity=0.097 Sum_probs=27.1
Q ss_pred CCCEEEEeeC-C---------CeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccC
Q 038702 43 SGSSLATTSF-D---------DTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMT 100 (154)
Q Consensus 43 ~~~~l~~~~~-d---------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 100 (154)
++..++.|+. + ..+.+||+.+.+-....... +....-. .++. .++++++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-p~~r~~~--~~~~-~~~~iyv~GG~~ 128 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHA-PMGMAGH--VTFV-HNGKAYVTGGVN 128 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCC-SSCCSSE--EEEE-ETTEEEEEECCC
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCC-Ccccccc--eEEE-ECCEEEEEeCcC
Confidence 5666777665 2 35788888765432221111 1111111 1122 467888888754
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=82.23 E-value=1.4 Score=33.65 Aligned_cols=37 Identities=16% Similarity=0.122 Sum_probs=29.3
Q ss_pred CeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE
Q 038702 34 AVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI 70 (154)
Q Consensus 34 ~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~ 70 (154)
.+.++...++..++++-+.|+++|+|++.++......
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 4455566677889999999999999999988765443
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.93 E-value=7.6 Score=24.54 Aligned_cols=101 Identities=13% Similarity=0.081 Sum_probs=50.2
Q ss_pred CCCEEEEeeCC--------CeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEcc-C-----CeEEEecC
Q 038702 43 SGSSLATTSFD--------DTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNM-T-----RTVEVISP 108 (154)
Q Consensus 43 ~~~~l~~~~~d--------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d-----~~i~i~~~ 108 (154)
++..++.|+.+ ..+.+||..+.+-...... +....-. .++ ..++++++.|+. + ..+.+||+
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~--p~~r~~~--~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~ 172 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPL--PYVVYGH--TVL-SHMDLVYVIGGKGSDRKCLNKMCVYDP 172 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCC--SSCCBSC--EEE-EETTEEEEECCBCTTSCBCCCEEEEET
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCC--CCcccce--eEE-EECCEEEEEeCCCCCCcccceEEEEeC
Confidence 56666666632 3588888876542221111 1111111 111 236677777776 2 35888988
Q ss_pred CCccc--eeEEeCCCcCCcceEEEecCCCccEEEEEcCCC-----eEEEeeC
Q 038702 109 AQRRS--VATLQSPYISAIPCRFHAHPHQVGTLAGATGGG-----QVYVWTS 153 (154)
Q Consensus 109 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-----~i~~wd~ 153 (154)
.+.+- +..+.. ......++.. ++.+++.|+.++ .+.+||+
T Consensus 173 ~~~~W~~~~~~p~---~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~ 219 (315)
T 4asc_A 173 KKFEWKELAPMQT---ARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSI 219 (315)
T ss_dssp TTTEEEECCCCSS---CCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEET
T ss_pred CCCeEEECCCCCC---chhceEEEEE--CCEEEEEeccCCCCccceEEEEEC
Confidence 76532 222221 1111222222 457777777543 4677775
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=80.97 E-value=13 Score=26.81 Aligned_cols=107 Identities=10% Similarity=0.020 Sum_probs=54.1
Q ss_pred CCCEEEEeeCCC------eEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCC--eEEEecCCCccce
Q 038702 43 SGSSLATTSFDD------TIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTR--TVEVISPAQRRSV 114 (154)
Q Consensus 43 ~~~~l~~~~~d~------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~--~i~i~~~~~~~~~ 114 (154)
++..++.|+.++ .+.+||..+..-...... +....-. .++.-.++.+++.|+.++ .+.+||..+.+-.
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~--p~~R~~h--~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~ 526 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSL--SHTRFRH--SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFK 526 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCC--SBCCBSC--EEEECTTSCEEEECCBCSSCSEEEEETTTTEEE
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCC--CCCcccc--eEEEEcCCEEEEECCCCCCCCEEEEECCCCceE
Confidence 667777776532 477788776432221111 1111111 222224788888888655 6889998865422
Q ss_pred eEEe---CCCcCCcceEEEecCCCccEEEEEcC--C-----CeEEEeeC
Q 038702 115 ATLQ---SPYISAIPCRFHAHPHQVGTLAGATG--G-----GQVYVWTS 153 (154)
Q Consensus 115 ~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~--d-----~~i~~wd~ 153 (154)
..-. .+........+.+....+.+++.|+. + ..+..||+
T Consensus 527 ~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~ 575 (695)
T 2zwa_A 527 DVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKY 575 (695)
T ss_dssp ECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEE
T ss_pred EccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEc
Confidence 1110 01111111224445423567777765 2 35777775
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 154 | ||||
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-07 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 3e-07 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-07 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-06 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 7e-07 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-06 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 0.002 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-05 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-05 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 0.001 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.001 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.001 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.002 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 0.002 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.002 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.002 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 0.003 |
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.2 bits (110), Expect = 2e-07
Identities = 13/150 (8%), Positives = 34/150 (22%), Gaps = 4/150 (2%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLS-HKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
+A + I++ +K L H V ++P + + T D +W
Sbjct: 22 IAICPNNHEVHIYEKS---GNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVW 78
Query: 60 SGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQS 119
+ + A + + ++
Sbjct: 79 TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKK 138
Query: 120 PYISAIPCRFHAHPHQVGTLAGATGGGQVY 149
P S + + +++
Sbjct: 139 PIRSTVLSLDWHPNSVLLAAGSCDFKCRIF 168
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 46.1 bits (108), Expect = 3e-07
Identities = 24/152 (15%), Positives = 42/152 (27%), Gaps = 5/152 (3%)
Query: 3 TSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV 62
T G + D S + KV+ AVH + S SG L D I +
Sbjct: 37 TLRDAGQIALVDGDSK-----KIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLW 91
Query: 63 NFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYI 122
E T + G++D G I + + S
Sbjct: 92 AKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRG 151
Query: 123 SAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154
+ + + +V + + + V +
Sbjct: 152 MTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 183
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 45.5 bits (106), Expect = 5e-07
Identities = 22/152 (14%), Positives = 47/152 (30%), Gaps = 12/152 (7%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLS-HKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
+ + D +A +WD+R + + H+ +++ F P+G++ AT S D T ++
Sbjct: 199 FVSGACDASAKLWDVRE-----GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF 253
Query: 60 SGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQS 119
+ H+N S + + G V + L
Sbjct: 254 DLRADQELMTYSHDNIICGITS---VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG 310
Query: 120 PYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 151
+A + + +W
Sbjct: 311 HDNRVSCLGVTDDGM---AVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 44.0 bits (102), Expect = 2e-06
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 6/61 (9%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLS-HKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
+ D +WD + VL+ H V + G ++AT S+D + IW
Sbjct: 285 LLAGYDDFNCNVWDALKA-----DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Query: 60 S 60
+
Sbjct: 340 N 340
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 45.2 bits (106), Expect = 7e-07
Identities = 24/148 (16%), Positives = 40/148 (27%), Gaps = 6/148 (4%)
Query: 3 TSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV 62
T G + D + E VL AVH + S SG L D + +
Sbjct: 37 TLRDAGQIALIDGSTY-----EIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLW 91
Query: 63 NFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGN-MTRTVEVISPAQRRSVATLQSPY 121
E T + + + GW+D G ++ +
Sbjct: 92 MKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRG 151
Query: 122 ISAIPCRFHAHPHQVGTLAGATGGGQVY 149
++ +H P LA +
Sbjct: 152 MTYDEQEYHPEPRVAAILASHYRPEFIV 179
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.0 bits (102), Expect = 2e-06
Identities = 31/164 (18%), Positives = 56/164 (34%), Gaps = 13/164 (7%)
Query: 1 MATSSTDGTACIWDLRS---MATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIG 57
+A S D +WD + + E HK +V+S F+ G S+ + S D ++
Sbjct: 220 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 279
Query: 58 IWSGVNFENTAMIHHNNQTGRWISS-------FRAIWGWDDSCIFIGNMTRTVEVISPAQ 110
+W+ N N + N ++ +D I G+ R V
Sbjct: 280 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS 339
Query: 111 RRSVATLQ---SPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 151
+ LQ + IS + + A +G + +W
Sbjct: 340 GNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 383
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 35.2 bits (79), Expect = 0.002
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 12/67 (17%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLS-HKRAVHS------AYFSPSGSSLATTSFD 53
+ + S D WD +S P +L H+ +V S + P + AT S D
Sbjct: 323 ILSGSKDRGVLFWDKKSG-----NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGD 377
Query: 54 DTIGIWS 60
IW
Sbjct: 378 CKARIWK 384
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (95), Expect = 1e-05
Identities = 8/60 (13%), Positives = 14/60 (23%), Gaps = 5/60 (8%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
++ D W +V S S + T S D ++
Sbjct: 280 FVSTGKDNLLNAWRTPYG-----ASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.9 bits (94), Expect = 2e-05
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLS-HKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
+ + + D T +WD ++ K L+ H+ V S F + + T S D T+ +W
Sbjct: 262 ILSCADDKTLRVWDYKNK-----RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 35.9 bits (81), Expect = 0.001
Identities = 14/79 (17%), Positives = 26/79 (32%)
Query: 21 DKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80
PE + H+ V F P S + + S D TI +W + + + + + I
Sbjct: 6 RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDI 65
Query: 81 SSFRAIWGWDDSCIFIGNM 99
S + +
Sbjct: 66 SFDHSGKLLASCSADMTIK 84
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 35.9 bits (81), Expect = 0.001
Identities = 22/156 (14%), Positives = 44/156 (28%), Gaps = 6/156 (3%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSL-ATTSFDDTIGIW 59
M ++ + D+ A+D + V+ K +A +P + + I
Sbjct: 11 MIVTNYPNNLHVVDV---ASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGI 67
Query: 60 SGVNFENTAMIHHNNQTGRWISSFR--AIWGWDDSCIFIGNMTRTVEVISPAQRRSVATL 117
+NT + ++ G S AI N T+ + + +
Sbjct: 68 DLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVF 127
Query: 118 QSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153
+ + L A G +YV
Sbjct: 128 STADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGP 163
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 35.6 bits (80), Expect = 0.001
Identities = 12/151 (7%), Positives = 35/151 (23%), Gaps = 1/151 (0%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
+ +S DG+ ++ + + L +K + F + +
Sbjct: 26 LLITSWDGSLTVYKFDIQ-AKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84
Query: 61 GVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSP 120
+ + NN+ I + ++ + +
Sbjct: 85 DLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS 144
Query: 121 YISAIPCRFHAHPHQVGTLAGATGGGQVYVW 151
+ + + L QV +
Sbjct: 145 NNTKVKNKIFTMDTNSSRLIVGMNNSQVQWF 175
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 35.6 bits (80), Expect = 0.002
Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
+ T+ +DG W+L++ + K + + S + L + DDT +
Sbjct: 266 LYTAGSDGIISCWNLQTR-----KKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNA 320
Query: 61 GVN 63
++
Sbjct: 321 AID 323
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.2 bits (79), Expect = 0.002
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLS-HKRAVHSAYFSPSGSSLATTSFDDTI 56
+ TSS DGT +WDL++ + T V S + A S + T
Sbjct: 273 VITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTE 329
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 35.0 bits (78), Expect = 0.002
Identities = 9/60 (15%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
+AT S D + +W++ +H + ++ + +++ + D I W+
Sbjct: 239 LATGSLDNSVIVWNMNK--PSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 34.8 bits (78), Expect = 0.002
Identities = 28/155 (18%), Positives = 47/155 (30%), Gaps = 4/155 (2%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSL-ATTSFDDTIGIW 59
+ + + D MA DK + +P G AT + +++
Sbjct: 4 ILAPARPDKLVVIDTEKMAVDK--VITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61
Query: 60 SGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQS 119
V E I + R S F A D + I +E+ + + L
Sbjct: 62 DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121
Query: 120 PYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154
+ P Q+ LA A G ++Y D
Sbjct: 122 AETLSRRK-AFEAPRQITMLAWARDGSKLYGLGRD 155
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 34.5 bits (77), Expect = 0.003
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
+A++S D T IW++ T K E T + + + +L + S + I
Sbjct: 253 IASASADKTIKIWNVA---TLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 154 | |||
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.97 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.96 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.96 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.96 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.95 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.95 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.94 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.94 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.94 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.94 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.94 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.94 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.93 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.92 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.92 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.92 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.92 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.91 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.91 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.9 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.89 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.88 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.87 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.87 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.86 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.86 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.86 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.85 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.85 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.79 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.75 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.75 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.75 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.63 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.63 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.61 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.56 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.45 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.38 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.38 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.3 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.29 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.24 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.19 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.16 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.14 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.13 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.04 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.88 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.75 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.73 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.63 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.62 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.56 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.48 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.48 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.42 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.34 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.33 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.26 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.2 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 97.93 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 97.83 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.75 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.68 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.64 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.62 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.6 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.53 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.34 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.04 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 95.97 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 95.95 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.86 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 95.38 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 95.38 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 95.32 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 95.2 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 94.84 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 94.78 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 92.68 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 91.76 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 91.53 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 90.57 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 90.5 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 88.95 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 87.71 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 85.4 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 85.13 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 84.54 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 83.93 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 83.72 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 81.8 | |
| d1c8ua2 | 171 | Thioesterase II (TesB) {Escherichia coli [TaxId: 5 | 81.61 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=4e-30 Score=163.38 Aligned_cols=142 Identities=15% Similarity=0.185 Sum_probs=120.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
+++|+.|+.|++||+++++. ...+.+|.+.|++++|+|++++|++++.|+.+++|+++............. ..
T Consensus 199 ~~~~~~d~~v~i~d~~~~~~----~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~-~~-- 271 (340)
T d1tbga_ 199 FVSGACDASAKLWDVREGMC----RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI-IC-- 271 (340)
T ss_dssp EEEEETTTEEEEEETTTTEE----EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTC-CS--
T ss_pred eEEeecCceEEEEECCCCcE----EEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccc-cC--
Confidence 36789999999999988763 344558999999999999999999999999999999988776655433222 11
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
....++|+|++++|++|+.||.|++||+.+++.+..+.+|...+ .+++|+| ++.+|++|+.||+|++||
T Consensus 272 ~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V--~~l~~s~-d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 272 GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV--SCLGVTD-DGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCE--EEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred ceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCE--EEEEEeC-CCCEEEEEccCCEEEEeC
Confidence 23467899999999999999999999999999999999876554 5789999 888999999999999997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=3e-29 Score=158.94 Aligned_cols=147 Identities=20% Similarity=0.249 Sum_probs=115.4
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecC--CCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNN--QTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~--~~~~ 78 (154)
|++|+.|+.|++||+++.+. ......|..+|+++.|+|+++++++++.|+.+++||.++......+.... ..++
T Consensus 162 l~sgs~d~~i~i~d~~~~~~----~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h 237 (311)
T d1nr0a1 162 IISGSDDNTVAIFEGPPFKF----KSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAH 237 (311)
T ss_dssp EEEEETTSCEEEEETTTBEE----EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSS
T ss_pred eccccccccccccccccccc----ccccccccccccccccCccccccccccccccccccccccccccccccccccccccc
Confidence 46899999999999988663 34444899999999999999999999999999999998876654443211 1111
Q ss_pred eEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcC-CcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 79 WISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYIS-AIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.-.+.+++|+|++++|++|+.||.|++||+++++++.++..+... .....+.|+ ++.|++++.||.|++||+|
T Consensus 238 ~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~---~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 238 SGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT---KQALVSISANGFINFVNPE 311 (311)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEEC---SSCEEEEETTCCEEEEETT
T ss_pred cccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEec---CCEEEEEECCCEEEEEeCC
Confidence 112346789999999999999999999999999999998865432 222345554 4679999999999999986
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=7.1e-28 Score=153.83 Aligned_cols=138 Identities=12% Similarity=0.124 Sum_probs=116.9
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
+++|+.|+.+++||+++++ ......|.+.|.+++|+|+++++++++.|+.+++||++..+......+..
T Consensus 198 ~~~~~~d~~v~i~d~~~~~-----~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------ 266 (337)
T d1gxra_ 198 LWTGGLDNTVRSWDLREGR-----QLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHES------ 266 (337)
T ss_dssp EEEEETTSEEEEEETTTTE-----EEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSS------
T ss_pred cccccccccccccccccce-----eecccccccceEEEEEcccccccceecccccccccccccccccccccccc------
Confidence 4678999999999998765 55666899999999999999999999999999999998877654433332
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.+..++|+|++++|++++.|+.|++||+.+++.+..+. |...+ .+++|+| ++++|++|+.||+|++||+
T Consensus 267 ~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v--~~~~~s~-d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 267 CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSV--LSCDISV-DDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCE--EEEEECT-TSCEEEEEETTSCEEEEEE
T ss_pred ccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCE--EEEEEeC-CCCEEEEEeCCCeEEEEEE
Confidence 23467899999999999999999999999999888776 33333 5789999 7899999999999999996
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=8.8e-28 Score=155.35 Aligned_cols=151 Identities=21% Similarity=0.268 Sum_probs=110.9
Q ss_pred CeeecCCCcEEEEEccCCCCCC---CCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe------
Q 038702 1 MATSSTDGTACIWDLRSMATDK---PEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH------ 71 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~------ 71 (154)
|++|+.|+.|++|+..+..... .......+|.+.|.+++|+|++++|++++.|+.+++||+++........
T Consensus 220 l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 299 (388)
T d1erja_ 220 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT 299 (388)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------C
T ss_pred EEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccc
Confidence 4789999999999998764310 0011223689999999999999999999999999999998765432211
Q ss_pred ---ecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEE----EecCCCccEEEEEcC
Q 038702 72 ---HNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRF----HAHPHQVGTLAGATG 144 (154)
Q Consensus 72 ---~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~ 144 (154)
....+.. ....++|+|++++|++|+.||.|++||+++++++.++.+|...+....+ .|+| ++.+|++|+.
T Consensus 300 ~~~~~~~~~~--~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~sp-d~~~l~s~s~ 376 (388)
T d1erja_ 300 CEVTYIGHKD--FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP-EYNVFATGSG 376 (388)
T ss_dssp EEEEEECCSS--CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCT-TCEEEEEEET
T ss_pred eeeecccccc--eEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCC-CCCEEEEEeC
Confidence 1111111 2346789999999999999999999999999999999988766653322 3567 7889999999
Q ss_pred CCeEEEeeCC
Q 038702 145 GGQVYVWTSD 154 (154)
Q Consensus 145 d~~i~~wd~~ 154 (154)
||+|++||++
T Consensus 377 Dg~I~iW~~~ 386 (388)
T d1erja_ 377 DCKARIWKYK 386 (388)
T ss_dssp TSEEEEEEEE
T ss_pred CCEEEEEeee
Confidence 9999999974
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.96 E-value=2e-27 Score=149.16 Aligned_cols=146 Identities=16% Similarity=0.186 Sum_probs=109.8
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|++|+.|+.|++||+++... .......|...|.+++|+|+++++++++.|+.+++||+.+............+...+
T Consensus 151 l~~g~~dg~i~~~d~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v 227 (299)
T d1nr0a2 151 VAVGGQDSKVHVYKLSGASV---SEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKV 227 (299)
T ss_dssp EEEEETTSEEEEEEEETTEE---EEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCE
T ss_pred cccccccccccccccccccc---ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 46899999999999986542 123344899999999999999999999999999999998765543332222223333
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEe--CCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQ--SPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
. +++|+|++++|++|+.|+.|++||+++++....+. .++...+ ..+.+. ++.+|++++.|++|++||+.
T Consensus 228 ~--~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v-~~~~~~--~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 228 A--CVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSV-NSVIWL--NETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp E--EEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCE-EEEEEE--ETTEEEEEETTSCEEEEECC
T ss_pred c--cccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcE-EEEEEC--CCCEEEEEeCCCEEEEEecc
Confidence 3 56899999999999999999999999876544333 2333333 344444 45789999999999999973
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.95 E-value=1.1e-26 Score=149.99 Aligned_cols=146 Identities=13% Similarity=0.180 Sum_probs=111.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
||+|+.|+.|++||...++.. ....+.+|.++|.+++|+|++++|++++.|++|++||+.+........... +..
T Consensus 22 la~~~~~~~i~iw~~~~~~~~--~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~-~~~-- 96 (371)
T d1k8kc_ 22 IAICPNNHEVHIYEKSGNKWV--QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILR-INR-- 96 (371)
T ss_dssp EEEECSSSEEEEEEEETTEEE--EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCC-CSS--
T ss_pred EEEEeCCCEEEEEECCCCCEE--EEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccccccc-ccc--
Confidence 478999999999999765420 023344899999999999999999999999999999998765443332211 122
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEe---CCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQ---SPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.+..++|+|+++++++++.|+.+++|+........... ..+...+ .+++|+| ++.+|++|+.|++|++||+
T Consensus 97 ~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v-~~v~~~p-~~~~l~s~s~D~~v~v~~~ 170 (371)
T d1k8kc_ 97 AARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTV-LSLDWHP-NSVLLAAGSCDFKCRIFSA 170 (371)
T ss_dssp CEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCE-EEEEECT-TSSEEEEEETTSCEEEEEC
T ss_pred cccccccccccccceeecccCcceeeeeeccccccccccccccccccc-ccccccc-cccceeccccCcEEEEEee
Confidence 23467899999999999999999999987665433222 2222333 6789999 8899999999999999986
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.1e-25 Score=143.56 Aligned_cols=147 Identities=15% Similarity=0.186 Sum_probs=113.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCc-eeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPT-KVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
|++|+ ||.|+|||+........... ...+|.+.|.+++|+|++++|++++.|+.|++||+............. +..
T Consensus 66 latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~- 142 (337)
T d1gxra_ 66 VYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTS-SAP- 142 (337)
T ss_dssp EEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEEC-SSS-
T ss_pred EEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccccccc-ccc-
Confidence 46776 89999999987654322122 223789999999999999999999999999999998655433222211 111
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
....+.|+|++.++++++.|+.+++|++++++.......+...+ .++++++ ++..+++++.|+.+++||+.
T Consensus 143 -~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v--~~l~~s~-~~~~~~~~~~d~~v~i~d~~ 213 (337)
T d1gxra_ 143 -ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA--SCIDISN-DGTKLWTGGLDNTVRSWDLR 213 (337)
T ss_dssp -CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE--EEEEECT-TSSEEEEEETTSEEEEEETT
T ss_pred -cccccccccccccccccccccccccccccccccccccccccccc--ccccccc-cccccccccccccccccccc
Confidence 23456799999999999999999999999998888777665444 5788998 78899999999999999973
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=5.1e-26 Score=142.59 Aligned_cols=140 Identities=17% Similarity=0.217 Sum_probs=116.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCC--------------------CEEEEeeCCCeEEEEe
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSG--------------------SSLATTSFDDTIGIWS 60 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------------~~l~~~~~d~~v~~~~ 60 (154)
|++|+.|+.|++|++..... ...+.+|...+.+++|+|++ ..+++++.|+.|++||
T Consensus 158 l~~~~~d~~v~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 233 (317)
T d1vyhc1 158 IASCSNDQTVRVWVVATKEC----KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD 233 (317)
T ss_dssp EEEEETTSCEEEEETTTCCE----EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEE
T ss_pred EEEEeCCCeEEEEeecccee----eEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEE
Confidence 47899999999999988764 44455889999999998753 3688999999999999
Q ss_pred ccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEE
Q 038702 61 GVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLA 140 (154)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 140 (154)
+++++....+.. +.. .+..++|+|++++|++++.||.|++||+++++++.++.+|...+ .+++|+| ++++|+
T Consensus 234 ~~~~~~~~~~~~---~~~--~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V--~~~~~s~-~~~~l~ 305 (317)
T d1vyhc1 234 VSTGMCLMTLVG---HDN--WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFV--TSLDFHK-TAPYVV 305 (317)
T ss_dssp TTTTEEEEEEEC---CSS--CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCE--EEEEECS-SSSCEE
T ss_pred CCCCcEEEEEeC---CCC--CEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCE--EEEEEcC-CCCEEE
Confidence 998776554432 111 23467899999999999999999999999999999999876554 5789999 788999
Q ss_pred EEcCCCeEEEee
Q 038702 141 GATGGGQVYVWT 152 (154)
Q Consensus 141 ~~~~d~~i~~wd 152 (154)
+|+.||+|++||
T Consensus 306 s~s~Dg~i~iWd 317 (317)
T d1vyhc1 306 TGSVDQTVKVWE 317 (317)
T ss_dssp EEETTSEEEEEC
T ss_pred EEeCCCeEEEeC
Confidence 999999999997
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=3.8e-26 Score=148.54 Aligned_cols=150 Identities=14% Similarity=0.158 Sum_probs=109.8
Q ss_pred CeeecCCCcEEEEEccCCCC-------CCCCCce-------eecccCCeEEEEEcCCCCEEEEeeCCCeEEEEecccccc
Q 038702 1 MATSSTDGTACIWDLRSMAT-------DKPEPTK-------VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN 66 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~-------~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~ 66 (154)
+++++.||.+++|++..... ....... ...+...+.+++|+|++ +|++|+.|++|++||+++.+.
T Consensus 139 ~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~ 217 (393)
T d1sq9a_ 139 LVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRP 217 (393)
T ss_dssp EEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEE
T ss_pred EEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccccc
Confidence 36788999999999864321 0000000 11345668899999987 889999999999999998776
Q ss_pred ceeEeecC-CCCceEeEEEEEEcCCCcEEEEEccCC---eEEEecCCCccceeEEe-------------CCCcCCcceEE
Q 038702 67 TAMIHHNN-QTGRWISSFRAIWGWDDSCIFIGNMTR---TVEVISPAQRRSVATLQ-------------SPYISAIPCRF 129 (154)
Q Consensus 67 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d~---~i~i~~~~~~~~~~~~~-------------~~~~~~~~~~~ 129 (154)
...+.... ..++.-.+.+++|+|++++|++|+.|+ .|++||+++++.+..+. +|... + .++
T Consensus 218 ~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~-V-~~l 295 (393)
T d1sq9a_ 218 LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSW-V-MSL 295 (393)
T ss_dssp EEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSC-E-EEE
T ss_pred ccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCc-e-eee
Confidence 54443211 111122344678999999999999887 59999999998887775 33333 3 689
Q ss_pred EecCCCccEEEEEcCCCeEEEeeCC
Q 038702 130 HAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 130 ~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
+|+| ++++|++++.|++|++||++
T Consensus 296 ~fsp-d~~~l~S~s~D~~v~vWd~~ 319 (393)
T d1sq9a_ 296 SFND-SGETLCSAGWDGKLRFWDVK 319 (393)
T ss_dssp EECS-SSSEEEEEETTSEEEEEETT
T ss_pred ccCC-CCCeeEEECCCCEEEEEECC
Confidence 9999 88999999999999999974
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.94 E-value=1.9e-25 Score=141.35 Aligned_cols=143 Identities=13% Similarity=0.119 Sum_probs=113.9
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeC--CCeEEEEeccccccceeEeecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSF--DDTIGIWSGVNFENTAMIHHNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (154)
|++|+.||+|++||+....... ...+..|.++|.+++|+|+++++++++. +..+++|++++.+....+. .+..
T Consensus 73 latg~~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~---~h~~ 147 (311)
T d1nr0a1 73 CASGDVHGNVRIWDTTQTTHIL--KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLT---GQAR 147 (311)
T ss_dssp EEEEETTSEEEEEESSSTTCCE--EEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCC---CCSS
T ss_pred EeccccCceEeeeeeecccccc--ccccccccCcccccccccccccccccccccccccccccccccccccccc---cccc
Confidence 5789999999999998765410 1234479999999999999999999876 4569999998776554332 1122
Q ss_pred eEeEEEEEEcCCCcE-EEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 79 WISSFRAIWGWDDSC-IFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~-l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
. +..++|+|++++ +++|+.|+.|++||+++++....+..|...+ .++.++| +++++++++.|+.|++||+
T Consensus 148 ~--v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i--~~v~~~p-~~~~l~~~~~d~~v~~~d~ 218 (311)
T d1nr0a1 148 A--MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFV--HSVRYNP-DGSLFASTGGDGTIVLYNG 218 (311)
T ss_dssp C--EEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCE--EEEEECT-TSSEEEEEETTSCEEEEET
T ss_pred c--cccccccccceeeecccccccccccccccccccccccccccccc--cccccCc-ccccccccccccccccccc
Confidence 2 346789999885 7889999999999999999888887665443 5789999 8899999999999999996
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=4.9e-26 Score=144.78 Aligned_cols=149 Identities=15% Similarity=0.135 Sum_probs=107.9
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCC-CCEEEEeeCCCeEEEEeccccccceeEe-ecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPS-GSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~ 78 (154)
+++++.|+.+++||....+... ......+|...|.+++|+|+ +.+|++++.|+.|++||+++.+....+. +.....
T Consensus 175 ~~~~~~d~~v~~~d~~~~~~~~-~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~- 252 (325)
T d1pgua1 175 SMTVGDDGSVVFYQGPPFKFSA-SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQ- 252 (325)
T ss_dssp EEEEETTTEEEEEETTTBEEEE-EECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCC-
T ss_pred EEEeecccccccccccccccce-ecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccc-
Confidence 3678999999999987654210 01112267889999999996 6889999999999999999887665443 222211
Q ss_pred eEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 79 WISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
...+.+.| |++++|++++.|+.|+|||+++++++..+..+........+++.+..+.+|++++.||.|++||+
T Consensus 253 -~~~~s~~~-~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 253 -GGIFALSW-LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp -SCEEEEEE-SSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred -cceeeeec-cCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 12233334 57899999999999999999999999888765544332333333323458999999999999996
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.94 E-value=7.4e-25 Score=138.87 Aligned_cols=147 Identities=14% Similarity=0.141 Sum_probs=113.5
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE----------
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI---------- 70 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~---------- 70 (154)
|++|+.||+|++||+.+++. ...+..|..+|.+++|+|+++++++++.|+.+.+|+..........
T Consensus 70 l~sgs~Dg~v~iWd~~~~~~----~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~ 145 (340)
T d1tbga_ 70 LVSASQDGKLIIWDSYTTNK----VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGY 145 (340)
T ss_dssp EEEEETTTEEEEEETTTTEE----EEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSC
T ss_pred EEEEECCCceeeeeccccee----EEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceeccccccc
Confidence 58999999999999988764 4445589999999999999999999999999999986532100000
Q ss_pred --------------------------------------------------------------------------eecCCC
Q 038702 71 --------------------------------------------------------------------------HHNNQT 76 (154)
Q Consensus 71 --------------------------------------------------------------------------~~~~~~ 76 (154)
.....+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h 225 (340)
T d1tbga_ 146 LSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225 (340)
T ss_dssp EEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCC
T ss_pred ccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCC
Confidence 000001
Q ss_pred CceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 77 GRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.. .+..++|+|++++|++++.|+.|++|+++..+.+..+...........++|+| ++.+|++|+.||.|++||+.
T Consensus 226 ~~--~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~g~~dg~i~iwd~~ 300 (340)
T d1tbga_ 226 ES--DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDAL 300 (340)
T ss_dssp SS--CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECS-SSCEEEEEETTSCEEEEETT
T ss_pred CC--CeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECC-CCCEEEEEECCCEEEEEECC
Confidence 11 12356899999999999999999999999988877775444444346889999 88999999999999999973
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.94 E-value=5.6e-25 Score=142.03 Aligned_cols=146 Identities=14% Similarity=0.122 Sum_probs=110.3
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEee-cCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHH-NNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~-~~~~~~~ 79 (154)
|++|+.|++|++||+...... ....+.+|...|.+++|+|+++.|++++.|+.+++|++........... ...+..
T Consensus 66 l~s~s~D~~i~vWd~~~~~~~--~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~- 142 (371)
T d1k8kc_ 66 IVTCGTDRNAYVWTLKGRTWK--PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS- 142 (371)
T ss_dssp EEEEETTSCEEEEEEETTEEE--EEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS-
T ss_pred EEEEECCCeEEEEeecccccc--cccccccccccccccccccccccceeecccCcceeeeeeccccccccccccccccc-
Confidence 578999999999999865421 0222347889999999999999999999999999999987665433322 222222
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCcc------------------ceeEEeCCCcCCcceEEEecCCCccEEEE
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRR------------------SVATLQSPYISAIPCRFHAHPHQVGTLAG 141 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 141 (154)
.+.+++|+|++++|++++.|+.+++|+..... .+.....|.. ....++|+| ++++|++
T Consensus 143 -~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~-~g~~l~s 218 (371)
T d1k8kc_ 143 -TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG--WVHGVCFSA-NGSRVAW 218 (371)
T ss_dssp -CEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS--CEEEEEECS-SSSEEEE
T ss_pred -ccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccC--cEEEEEeec-ccccccc
Confidence 33467899999999999999999999976432 2222222222 236789999 7899999
Q ss_pred EcCCCeEEEeeC
Q 038702 142 ATGGGQVYVWTS 153 (154)
Q Consensus 142 ~~~d~~i~~wd~ 153 (154)
++.|+.|++||+
T Consensus 219 ~~~d~~i~iwd~ 230 (371)
T d1k8kc_ 219 VSHDSTVCLADA 230 (371)
T ss_dssp EETTTEEEEEEG
T ss_pred cccCCcceEEee
Confidence 999999999996
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.8e-25 Score=145.36 Aligned_cols=152 Identities=13% Similarity=0.088 Sum_probs=110.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCC--CCceeecccCCeEEEEEcCCCCEEEEeeCCC---eEEEEeccccccceeEeec--
Q 038702 1 MATSSTDGTACIWDLRSMATDKP--EPTKVLSHKRAVHSAYFSPSGSSLATTSFDD---TIGIWSGVNFENTAMIHHN-- 73 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~v~~~~~~~~~~~~~~~~~-- 73 (154)
|++|+.|++|++||+.+++.... ....+.+|..+|.+++|+|++++|++|+.|+ .|++||+++++....+...
T Consensus 198 lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~ 277 (393)
T d1sq9a_ 198 IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTH 277 (393)
T ss_dssp EEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--
T ss_pred EEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccc
Confidence 47899999999999987653100 0122347999999999999999999999987 4999999987665443210
Q ss_pred ------CCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCc-------------------ceE
Q 038702 74 ------NQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAI-------------------PCR 128 (154)
Q Consensus 74 ------~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~-------------------~~~ 128 (154)
...++.-.+..++|+|++++|++++.|++|++||+++++++.++++|...+. ...
T Consensus 278 ~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~ 357 (393)
T d1sq9a_ 278 SSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD 357 (393)
T ss_dssp ------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEE
T ss_pred cccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcccce
Confidence 0111122345679999999999999999999999999999999988754321 123
Q ss_pred EEecCC---------CccEEEEEcCCCeEEEee
Q 038702 129 FHAHPH---------QVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 129 ~~~~~~---------~~~~l~~~~~d~~i~~wd 152 (154)
+.|.+. ..+.|++.+.|+.|++|.
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~ 390 (393)
T d1sq9a_ 358 VKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 390 (393)
T ss_dssp EEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred EEECccCceeccccCCCCEEEEEEcCCeEEEEe
Confidence 444331 224588889999999985
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.1e-24 Score=137.91 Aligned_cols=143 Identities=14% Similarity=0.168 Sum_probs=110.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
+++|+.||.|++||++..+. .....+|...+.++.++ +++|++++.|+.|++||+...+....+.....+...+
T Consensus 190 l~s~~~dg~i~~~d~~~~~~----~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 263 (342)
T d2ovrb2 190 VVSGSLDTSIRVWDVETGNC----IHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAV 263 (342)
T ss_dssp EEEEETTSCEEEEETTTCCE----EEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCE
T ss_pred EEEEeCCCeEEEeeccccee----eeEecccccceeEEecC--CCEEEEEcCCCEEEEEecccccccccccccceeeece
Confidence 47899999999999987663 34445899999988775 5699999999999999998877665554322222222
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCc---CCcceEEEecCCCccEEEEEcCCCe----EEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYI---SAIPCRFHAHPHQVGTLAGATGGGQ----VYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d~~----i~~wd~ 153 (154)
.. +.+++.++++++.||.|++||+++++.+..+..... .....+++|+| ++.++++|+.||+ |++||+
T Consensus 264 --~~--~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~-~~~~la~g~~dGt~~~~l~~~Df 338 (342)
T d2ovrb2 264 --TC--LQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDF 338 (342)
T ss_dssp --EE--EEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS-SEEEEEEECSSSSSCCEEEEEEC
T ss_pred --ee--cccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECC-CCCEEEEEeCCCCCeeEEEEEeC
Confidence 22 344678999999999999999999999888763221 22237899999 8899999998885 999998
Q ss_pred C
Q 038702 154 D 154 (154)
Q Consensus 154 ~ 154 (154)
+
T Consensus 339 ~ 339 (342)
T d2ovrb2 339 D 339 (342)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=1.4e-23 Score=133.32 Aligned_cols=143 Identities=12% Similarity=0.137 Sum_probs=109.5
Q ss_pred cCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCE-EEEeeCCCeEEEEeccccccceeEeecCCCCceEeEE
Q 038702 5 STDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSS-LATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSF 83 (154)
Q Consensus 5 ~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (154)
+.++.+++|+..+++. ...+.+|...|.+++|+|++.. +++++.|+.+++|+....+..........+... +.
T Consensus 136 ~~~~~~~~~~~~~~~~----~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~--v~ 209 (325)
T d1pgua1 136 GRDNFGVFISWDSGNS----LGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSF--VR 209 (325)
T ss_dssp CSSCSEEEEETTTCCE----EEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCC--EE
T ss_pred cccceEEEEeeccccc----ceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCc--cE
Confidence 4577899999987653 4444589999999999998764 778999999999999876655444332223333 34
Q ss_pred EEEEcCC-CcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEec-CCCccEEEEEcCCCeEEEeeCC
Q 038702 84 RAIWGWD-DSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAH-PHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 84 ~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
+++|+|+ +.++++++.|+.|++||+++++.+..+.+|........++.. | ++.+|++++.|+.|++||++
T Consensus 210 ~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~-dg~~l~s~s~D~~i~iwd~~ 281 (325)
T d1pgua1 210 DVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVT 281 (325)
T ss_dssp EEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETT
T ss_pred Eeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeecc-CCCEEEEEeCCCeEEEEECC
Confidence 6789996 688999999999999999999999999877665542323322 3 67899999999999999974
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.92 E-value=1.8e-23 Score=130.85 Aligned_cols=141 Identities=21% Similarity=0.251 Sum_probs=118.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|+||+.||+|++||+.+++. ...+.+|...|.+++|+|++..++++..++.+..|+....+........ ..
T Consensus 32 l~s~s~Dg~i~iWd~~~~~~----~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-- 102 (317)
T d1vyhc1 32 MVSASEDATIKVWDYETGDF----ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGH---DH-- 102 (317)
T ss_dssp EEEEESSSCEEEEETTTCCC----CEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCC---SS--
T ss_pred EEEEeCCCeEEEEECCCCCE----EEEEeCCCCcEEEEeeecccccccccccccccccccccccccccccccc---cc--
Confidence 58999999999999988764 4555589999999999999999999999999999998776654433211 11
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
....+.++|++..+++++.|+.+++||+++++.+..+.++.... ..++++| ++.+|++++.|+.|++|++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~l~~~~~d~~v~~~~~ 172 (317)
T d1vyhc1 103 NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWV--RMVRPNQ-DGTLIASCSNDQTVRVWVV 172 (317)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCE--EEEEECT-TSSEEEEEETTSCEEEEET
T ss_pred cceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcc--eeeeccc-CCCEEEEEeCCCeEEEEee
Confidence 23456799999999999999999999999999999988765444 5788999 7899999999999999986
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=1e-23 Score=136.15 Aligned_cols=149 Identities=17% Similarity=0.188 Sum_probs=113.6
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecC-------
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNN------- 74 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~------- 74 (154)
+.+..++...+|+....+..........+|.+.|++++|+|+|++|++|+ |++|++||+.+++....+....
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~ 110 (388)
T d1erja_ 32 LKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPE 110 (388)
T ss_dssp SEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC---------
T ss_pred cccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeeccccccccccc
Confidence 35667788899997654432112234458999999999999999999986 8999999998876554332110
Q ss_pred ------CCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeE
Q 038702 75 ------QTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQV 148 (154)
Q Consensus 75 ------~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 148 (154)
.......+.+++|+|++++|++|+.||.|++||...++.+..+.+|...+ ..+.+++ ++..+++++.++.+
T Consensus 111 ~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v--~~~~~~~-~~~~~~~~~~~~~i 187 (388)
T d1erja_ 111 NLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDI--YSLDYFP-SGDKLVSGSGDRTV 187 (388)
T ss_dssp --------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE--EEEEECT-TSSEEEEEETTSEE
T ss_pred ccccccccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccc--ccccccc-ccccccccccceee
Confidence 01111234467999999999999999999999999999988888766554 5678888 77899999999999
Q ss_pred EEeeCC
Q 038702 149 YVWTSD 154 (154)
Q Consensus 149 ~~wd~~ 154 (154)
++||..
T Consensus 188 ~~~d~~ 193 (388)
T d1erja_ 188 RIWDLR 193 (388)
T ss_dssp EEEETT
T ss_pred eeeecc
Confidence 999973
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=1.3e-23 Score=131.07 Aligned_cols=139 Identities=12% Similarity=0.117 Sum_probs=101.3
Q ss_pred eecC-CCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 3 TSST-DGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 3 ~~~~-d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
+++. ++.+++|++...+. ..... .|...+++++|+|++.+|++++.||.|++||+.+........ ..+...+
T Consensus 135 v~~~~~~~v~~~~~~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~--~~h~~~v 208 (287)
T d1pgua2 135 VGLEEGNTIQVFKLSDLEV----SFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRW--AFRTSKI 208 (287)
T ss_dssp EEETTTSCEEEEETTEEEE----EEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCS--CCCSSCE
T ss_pred eeccccceeeeeeccccce----eeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccc--ccccccc
Confidence 4444 45799999876542 22222 578899999999999999999999999999998766432211 1122223
Q ss_pred eEEEEEEcC----------CCcEEEEEccCCeEEEecCCCc-cceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEE
Q 038702 81 SSFRAIWGW----------DDSCIFIGNMTRTVEVISPAQR-RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVY 149 (154)
Q Consensus 81 ~~~~~~~~~----------~~~~l~~~~~d~~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 149 (154)
.+++|+| ++.++++|+.|+.|++||++.+ +.+..+.+|...+ .+++|+| + ..|++++.|+.|+
T Consensus 209 --~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V--~~v~~~~-~-~~l~s~g~D~~v~ 282 (287)
T d1pgua2 209 --NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGV--NNLLWET-P-STLVSSGADACIK 282 (287)
T ss_dssp --EEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCE--EEEEEEE-T-TEEEEEETTSCEE
T ss_pred --ceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCe--EEEEECC-C-CEEEEEECCCeEE
Confidence 3456665 4578999999999999999764 4555555555444 6788998 5 4688999999999
Q ss_pred EeeC
Q 038702 150 VWTS 153 (154)
Q Consensus 150 ~wd~ 153 (154)
+||+
T Consensus 283 iW~i 286 (287)
T d1pgua2 283 RWNV 286 (287)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9985
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=3.7e-23 Score=131.34 Aligned_cols=144 Identities=15% Similarity=0.161 Sum_probs=107.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE----------
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI---------- 70 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~---------- 70 (154)
|+||+.||+|++||+.+++. ...+.+|.++|.+++|+|+ .+|++++.|++|++|+..........
T Consensus 26 l~tgs~Dg~i~vWd~~~~~~----~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~ 100 (355)
T d1nexb2 26 VITGADDKMIRVYDSINKKF----LLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL 100 (355)
T ss_dssp EEEEETTTEEEEEETTTTEE----EEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred EEEEeCCCeEEEEECCCCcE----EEEEECCCCCEEEEEEcCC-CEEEEEeccccccccccccccccccccccccccccc
Confidence 58999999999999988764 4555589999999999985 58999999999999987643211000
Q ss_pred -------------eec----------------------------------------------------------------
Q 038702 71 -------------HHN---------------------------------------------------------------- 73 (154)
Q Consensus 71 -------------~~~---------------------------------------------------------------- 73 (154)
...
T Consensus 101 ~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d 180 (355)
T d1nexb2 101 DIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYD 180 (355)
T ss_dssp EEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETT
T ss_pred ccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeeccc
Confidence 000
Q ss_pred -------CCCC--------ceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccE
Q 038702 74 -------NQTG--------RWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGT 138 (154)
Q Consensus 74 -------~~~~--------~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (154)
.... .........++|++.++++++.|+.|++||.++++.+..+.+|...+ ..+++++ ++
T Consensus 181 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v--~~~~~~~---~~ 255 (355)
T d1nexb2 181 NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALV--GLLRLSD---KF 255 (355)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCC--CEEEECS---SE
T ss_pred ceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccccccccccccccc--ccccccc---ce
Confidence 0000 00011134678889999999999999999999999999998776555 4567754 68
Q ss_pred EEEEcCCCeEEEeeCC
Q 038702 139 LAGATGGGQVYVWTSD 154 (154)
Q Consensus 139 l~~~~~d~~i~~wd~~ 154 (154)
|++++.||.|++||++
T Consensus 256 l~~~~~dg~i~iwd~~ 271 (355)
T d1nexb2 256 LVSAAADGSIRGWDAN 271 (355)
T ss_dssp EEEECTTSEEEEEETT
T ss_pred eeeeeccccccccccc
Confidence 9999999999999974
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.91 E-value=2.1e-23 Score=130.67 Aligned_cols=145 Identities=12% Similarity=0.112 Sum_probs=103.3
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccce----eEee---
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTA----MIHH--- 72 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~----~~~~--- 72 (154)
|++|+.||+|++||+.+++. ...+. .|...|.+++|+|++++ ++++.|+.+++|+........ ...+
T Consensus 27 l~s~s~Dg~v~vWd~~~~~~----~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 101 (299)
T d1nr0a2 27 LFSADAEGHINSWDISTGIS----NRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQ 101 (299)
T ss_dssp EEEEETTSCEEEEETTTCCE----EECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEEECSSSSSSCTTSCCEEECSSC
T ss_pred EEEEcCCCeEEEEECCCCcE----EEEEcCCCCCcEEEEEeecccee-ecccceeeEEEeccCCcccccccccccccccc
Confidence 57999999999999987653 22222 68999999999999874 566689999999976432110 0000
Q ss_pred -----cCCCCce-----------------------EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEe-CCCcC
Q 038702 73 -----NNQTGRW-----------------------ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQ-SPYIS 123 (154)
Q Consensus 73 -----~~~~~~~-----------------------~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-~~~~~ 123 (154)
..+.+.. .....++|+|+++++++++.|+.|++||+++++...... .|..
T Consensus 102 ~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~- 180 (299)
T d1nr0a2 102 PLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPA- 180 (299)
T ss_dssp EEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSS-
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 0000000 012235789999999999999999999998776543322 3333
Q ss_pred CcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 124 AIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 124 ~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.+ .+++++| ++.+|++++.|+.|++||+
T Consensus 181 ~i-~~~~~~~-~~~~l~~~~~d~~i~~~~~ 208 (299)
T d1nr0a2 181 EI-TSVAFSN-NGAFLVATDQSRKVIPYSV 208 (299)
T ss_dssp CE-EEEEECT-TSSEEEEEETTSCEEEEEG
T ss_pred cc-ccccccc-ccccccccccccccccccc
Confidence 33 6789999 7899999999999999996
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=6.7e-23 Score=130.15 Aligned_cols=137 Identities=18% Similarity=0.206 Sum_probs=101.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
+++++.|+.|++||++++.. ...+.+|...|.+++++ +++|++++.||.|++||+++........+...
T Consensus 216 ~~~~~~d~~i~i~d~~~~~~----~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----- 284 (355)
T d1nexb2 216 CISASMDTTIRIWDLENGEL----MYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNL----- 284 (355)
T ss_dssp EEEEETTSCEEEEETTTCCE----EEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEEEEECTTC-----
T ss_pred eecccccceEEeeecccccc----ccccccccccccccccc--cceeeeeecccccccccccccceecccccCCc-----
Confidence 36789999999999988764 44555899999999996 57999999999999999987765443332221
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.. ...+++++.++++| .|+.|++||+++++++.....++...+ .+++|+| + .++++++.||++++|.+
T Consensus 285 ~~-~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~V-~~v~~~~-~-~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 285 SA-ITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDADQI-WSVNFKG-K-TLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp CC-CCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSEE-EEEEEET-T-EEEEEEESSSCEEEEEE
T ss_pred eE-EEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEEecCCCCCE-EEEEEcC-C-eEEEEEECCCcEEEEEE
Confidence 11 12456777777665 589999999999998865433333333 6789998 4 57888999998776643
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=1.5e-21 Score=120.93 Aligned_cols=138 Identities=17% Similarity=0.250 Sum_probs=87.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeec-------
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHN------- 73 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~------- 73 (154)
|++|+.||+|+|||+.+++. ...+.+|.+.|.+++| ++++|++++.|+.+++|++............
T Consensus 28 l~sgs~Dg~i~vWd~~~~~~----~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~ 101 (293)
T d1p22a2 28 IVSGLRDNTIKIWDKNTLEC----KRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHL 101 (293)
T ss_dssp EEEEESSSCEEEEESSSCCE----EEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEE
T ss_pred EEEEeCCCeEEEEECCCCcE----EEEEecCCCCEeeeec--ccceeecccccccccccccccccccccccccccccccc
Confidence 58999999999999988763 3444589999999887 6789999999999999998765322111000
Q ss_pred ---------------------------------CCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCC
Q 038702 74 ---------------------------------NQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSP 120 (154)
Q Consensus 74 ---------------------------------~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 120 (154)
..+...+ ....+....+++++.|+.+++||.++++.+..+.++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~ 177 (293)
T d1p22a2 102 RFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV----NVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGH 177 (293)
T ss_dssp ECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCE----EEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred cccccceeecccccceeEeecccccccccccccccccccc----ccceecccccccccCCCceeeecCCCCcEEEEEccc
Confidence 0000000 011223445566666777777777766666666654
Q ss_pred CcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 121 YISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.... ..+.++ +.++++++.|+.|++||+
T Consensus 178 ~~~v--~~~~~~---~~~l~~~~~dg~i~i~d~ 205 (293)
T d1p22a2 178 KRGI--ACLQYR---DRLVVSGSSDNTIRLWDI 205 (293)
T ss_dssp SSCE--EEEEEE---TTEEEEEETTSCEEEEET
T ss_pred cccc--ccccCC---CCeEEEecCCCEEEEEec
Confidence 4332 233333 245666666666666665
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.88 E-value=6.2e-22 Score=123.32 Aligned_cols=143 Identities=15% Similarity=0.151 Sum_probs=97.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEecccccc--------------
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN-------------- 66 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~-------------- 66 (154)
|+||+.||+|++||+.+.. .+|...|.++.++++. .+++++.|+++++|++...+.
T Consensus 24 l~sgs~Dg~v~~Wd~~~~~---------~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~~~~ 93 (287)
T d1pgua2 24 LISGSYDGRIMEWSSSSMH---------QDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGF 93 (287)
T ss_dssp TEEEETTSCEEETTTTEEE---------CCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEECSSCEEEEEECSSSE
T ss_pred EEEEeCCCeEEEEECCCCC---------CCCCCCEEEEEecCCC-eEEEEeeccccccccccccccccceeeeeeccCCc
Confidence 6899999999999976532 3678888888887654 567788888888887642110
Q ss_pred --------------------ceeEee------------------------------------cCCCCceEeEEEEEEcCC
Q 038702 67 --------------------TAMIHH------------------------------------NNQTGRWISSFRAIWGWD 90 (154)
Q Consensus 67 --------------------~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~ 90 (154)
...... ............++|+|+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 173 (287)
T d1pgua2 94 TAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPS 173 (287)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTT
T ss_pred eEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccC
Confidence 000000 000000011234689999
Q ss_pred CcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCC---------CccEEEEEcCCCeEEEeeCC
Q 038702 91 DSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPH---------QVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 91 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~~~d~~i~~wd~~ 154 (154)
+.+|++++.||.|++||+.+++........+...+ .+++|+|. ++.+|++|+.|++|++||++
T Consensus 174 ~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v-~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~ 245 (287)
T d1pgua2 174 ETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKI-NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK 245 (287)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCE-EEEEECCCC------CCSCCEEEEEETTSCEEEEESS
T ss_pred ccccccccccccccceeeccccccccccccccccc-ceeeecccccccccccCCCCeeEeecCCCeEEEEECC
Confidence 99999999999999999998876544332333333 56778762 45689999999999999973
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=9.5e-21 Score=119.58 Aligned_cols=137 Identities=18% Similarity=0.250 Sum_probs=101.6
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEe
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWIS 81 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (154)
++++.|+.|++||...... ...+.+|...+..+.+ ++..+++++.|+.|++||++..+....... +...+.
T Consensus 151 ~~~~~d~~i~~~d~~~~~~----~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~---~~~~v~ 221 (342)
T d2ovrb2 151 VSGAYDFMVKVWDPETETC----LHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTG---HQSLTS 221 (342)
T ss_dssp EEEETTSCEEEEEGGGTEE----EEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECC---CCSCEE
T ss_pred eeecCCCeEEEeeccccee----eEEEcCcccccccccC--CCCEEEEEeCCCeEEEeecccceeeeEecc---ccccee
Confidence 5788899999999987653 3444477777666555 788999999999999999988776544332 122222
Q ss_pred EEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCc-ceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 82 SFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAI-PCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
+++++++++++++.|+.|++||....+....+..+..... ...+.++ ++++++|+.||+|++||++
T Consensus 222 ----~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~s~s~Dg~i~iwd~~ 288 (342)
T d2ovrb2 222 ----GMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN---KNFVITSSDDGTVKLWDLK 288 (342)
T ss_dssp ----EEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC---SSEEEEEETTSEEEEEETT
T ss_pred ----EEecCCCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC---CCeeEEEcCCCEEEEEECC
Confidence 2345578999999999999999999888888876543222 2344554 4799999999999999973
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.87 E-value=1.3e-20 Score=123.81 Aligned_cols=147 Identities=14% Similarity=0.074 Sum_probs=107.5
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEe
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWIS 81 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (154)
++.+.||+|.+||..+++ ....+.....+..++|+|||+++++++.|+.+.+||+.+.+...........+..-.
T Consensus 36 v~~~d~g~v~v~D~~t~~-----v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~ 110 (432)
T d1qksa2 36 VTLRDAGQIALIDGSTYE-----IKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSI 110 (432)
T ss_dssp EEETTTTEEEEEETTTCC-----EEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEE
T ss_pred EEEcCCCEEEEEECCCCc-----EEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCe
Confidence 688999999999999887 444443335699999999999999999999999999988765543332211111223
Q ss_pred EEEEEEcCCCcEE-EEEccCCeEEEecCCCccceeEEeCCCcCC---------cceEEEecCCCccEEEEEcCCCeEEEe
Q 038702 82 SFRAIWGWDDSCI-FIGNMTRTVEVISPAQRRSVATLQSPYISA---------IPCRFHAHPHQVGTLAGATGGGQVYVW 151 (154)
Q Consensus 82 ~~~~~~~~~~~~l-~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~d~~i~~w 151 (154)
.+...|+|||++| +++..++.+++||..+++.+..+..+.... ....+.++|....++++...++.|.+|
T Consensus 111 ~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~ 190 (432)
T d1qksa2 111 ETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLV 190 (432)
T ss_dssp EECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred EEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEE
Confidence 3345678899976 677889999999999999888876543221 123567788444456777788999999
Q ss_pred eC
Q 038702 152 TS 153 (154)
Q Consensus 152 d~ 153 (154)
|.
T Consensus 191 d~ 192 (432)
T d1qksa2 191 DY 192 (432)
T ss_dssp ET
T ss_pred Ec
Confidence 85
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.86 E-value=2.1e-20 Score=117.76 Aligned_cols=148 Identities=14% Similarity=0.110 Sum_probs=105.5
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCC-CCEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPS-GSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
|++|+.||+|+|||++..... .......+|.++|.+++|+|+ +.+|++|+.|+.|++|++................
T Consensus 26 L~s~s~Dg~v~iwd~~~~~~~-~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~-- 102 (342)
T d1yfqa_ 26 LLITSWDGSLTVYKFDIQAKN-VDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANL-- 102 (342)
T ss_dssp EEEEETTSEEEEEEEETTTTE-EEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCS--
T ss_pred EEEEECCCeEEEEEccCCCcc-eEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccccccccccccccc--
Confidence 589999999999999875431 112333479999999999986 5589999999999999998876655443322211
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEe----CCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQ----SPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.....+.++...+++++.++.+++||++++....... .+........+.+.+ .+..+++++.|+.|++||+.
T Consensus 103 --~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~ 178 (342)
T d1yfqa_ 103 --GICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT-NSSRLIVGMNNSQVQWFRLP 178 (342)
T ss_dssp --CEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE-CSSEEEEEESTTEEEEEESS
T ss_pred --ccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeec-cCCceeeecCCCcEEEEecc
Confidence 1123456678899999999999999998665443332 222222223445555 66889999999999999973
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1.2e-20 Score=116.77 Aligned_cols=133 Identities=15% Similarity=0.247 Sum_probs=101.6
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEe
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWIS 81 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (154)
++++.|+.+++||+++.+. ...+.++...+..+.++ +..+++++.|+.|++||+++........... ..+
T Consensus 152 ~~~s~d~~i~~~d~~~~~~----~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~v- 221 (293)
T d1p22a2 152 VSASGDRTIKVWNTSTCEF----VRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHE---ELV- 221 (293)
T ss_dssp EEEETTSEEEEEETTTCCE----EEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCS---SCE-
T ss_pred ccccCCCceeeecCCCCcE----EEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccc---eee-
Confidence 5688999999999987763 44455788888888774 5789999999999999999877655443221 112
Q ss_pred EEEEEEcCCCcEEEEEccCCeEEEecCCC---------ccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 82 SFRAIWGWDDSCIFIGNMTRTVEVISPAQ---------RRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
..+++++.+|++++.||.|++||+.. ...+..+.+|...+. +++|++ .+|++++.||+|++||
T Consensus 222 ---~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~--~v~~d~---~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 222 ---RCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVF--RLQFDE---FQIVSSSHDDTILIWD 293 (293)
T ss_dssp ---EEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCC--CEEECS---SCEEECCSSSEEEEEC
T ss_pred ---eeccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEE--EEEEcC---CEEEEEecCCEEEEeC
Confidence 23567889999999999999999753 234567777765554 567754 6899999999999998
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.86 E-value=1e-20 Score=119.22 Aligned_cols=120 Identities=14% Similarity=0.051 Sum_probs=92.6
Q ss_pred cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCC-CcEEEEEccCCeEEEecC
Q 038702 30 SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWD-DSCIFIGNMTRTVEVISP 108 (154)
Q Consensus 30 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~i~~~ 108 (154)
+|.+.|++|+|+|++++|++++.|++|++||++.............+... +.+++|+|+ +.+|++|+.|+.|++|+.
T Consensus 9 ~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~--V~~v~f~~~~~~~l~sg~~d~~v~~w~~ 86 (342)
T d1yfqa_ 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHP--LLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSC--EEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred CCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCC--EEEEEEeCCCCCEEEEcccccceeeeec
Confidence 89999999999999999999999999999999876554333222122222 446789886 568999999999999999
Q ss_pred CCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 109 AQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
...........+..... ....+.+ +...+++++.|+.+++||+
T Consensus 87 ~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~wd~ 129 (342)
T d1yfqa_ 87 IGSPSFQALTNNEANLG-ICRICKY-GDDKLIAASWDGLIEVIDP 129 (342)
T ss_dssp SSSSSEEECBSCCCCSC-EEEEEEE-TTTEEEEEETTSEEEEECH
T ss_pred ccccccccccccccccc-ccccccc-ccccccccccccccceeec
Confidence 98887777665554444 3334444 6688999999999999985
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.85 E-value=2.5e-20 Score=118.82 Aligned_cols=137 Identities=9% Similarity=0.012 Sum_probs=105.8
Q ss_pred eecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCC--eEEEEeccccccceeEeecCCCCceE
Q 038702 3 TSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDD--TIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 3 ~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
+...+|.|++||+..+. ..+ .+|...|.+++|+|+|++|++++.+. .+++||.++++......+..
T Consensus 19 a~~~~g~v~v~d~~~~~-----~~~-~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~------ 86 (360)
T d1k32a3 19 AFVSRGQAFIQDVSGTY-----VLK-VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLG------ 86 (360)
T ss_dssp EEEETTEEEEECTTSSB-----EEE-CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCC------
T ss_pred EEEECCeEEEEECCCCc-----EEE-ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCc------
Confidence 33456899999997654 333 47999999999999999998776553 79999999876655443332
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEE----------cCCCeEEE
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGA----------TGGGQVYV 150 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~~d~~i~~ 150 (154)
....++|+|++++|++++.++.+++|+..+++....+..+.... ..++|+| ++++|+.+ ..++.+++
T Consensus 87 ~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~sp-dg~~la~~~~~~~~~~~~~~~~~~~v 163 (360)
T d1k32a3 87 NVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMI--TDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHV 163 (360)
T ss_dssp SEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCC--CCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred eEEeeeecccccccceeccccccccccccccceeeeeecccccc--cchhhcc-ceeeeeeeccccccceeeccccceee
Confidence 23467899999999999999999999999999888877655444 4689999 78888754 34567889
Q ss_pred eeCC
Q 038702 151 WTSD 154 (154)
Q Consensus 151 wd~~ 154 (154)
||+.
T Consensus 164 ~d~~ 167 (360)
T d1k32a3 164 YDME 167 (360)
T ss_dssp EETT
T ss_pred eccc
Confidence 9863
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.85 E-value=5.2e-20 Score=120.65 Aligned_cols=116 Identities=17% Similarity=0.118 Sum_probs=88.8
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEe
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWIS 81 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (154)
++.+.||+|++||+.+++ ....+.+...+..++|+|||+++++++.|+.+++||+.+.+...........+..-.
T Consensus 36 V~~~~dg~v~vwD~~t~~-----~~~~l~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~ 110 (426)
T d1hzua2 36 VTLRDAGQIALVDGDSKK-----IVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSV 110 (426)
T ss_dssp EEETTTTEEEEEETTTCS-----EEEEEECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEE
T ss_pred EEEcCCCEEEEEECCCCc-----EEEEEeCCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcce
Confidence 678899999999999877 444454445799999999999999999999999999998876544332222222223
Q ss_pred EEEEEEcCCCcEEEEE-ccCCeEEEecCCCccceeEEeCCCc
Q 038702 82 SFRAIWGWDDSCIFIG-NMTRTVEVISPAQRRSVATLQSPYI 122 (154)
Q Consensus 82 ~~~~~~~~~~~~l~~~-~~d~~i~i~~~~~~~~~~~~~~~~~ 122 (154)
.+.++|+|||++++++ ..++.+++||..+++.+..+..+..
T Consensus 111 ~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~ 152 (426)
T d1hzua2 111 ESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM 152 (426)
T ss_dssp EECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEE
T ss_pred EEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCC
Confidence 4466788999987555 5889999999999998887775543
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.79 E-value=1.3e-18 Score=110.79 Aligned_cols=132 Identities=11% Similarity=-0.082 Sum_probs=103.0
Q ss_pred CcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEE
Q 038702 8 GTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIW 87 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (154)
..|++||..+++ ...+..|...|.+++|+|++++|++++.++.+++|++.+.+.......... ....++|
T Consensus 66 ~~v~v~d~~~~~-----~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 135 (360)
T d1k32a3 66 DFLGIYDYRTGK-----AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREA-----MITDFTI 135 (360)
T ss_dssp EEEEEEETTTCC-----EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSS-----CCCCEEE
T ss_pred CEEEEEECCCCc-----EEEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccc-----cccchhh
Confidence 379999998765 556668999999999999999999999999999999998877655543221 1224689
Q ss_pred cCCCcEEEEEc----------cCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 88 GWDDSCIFIGN----------MTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 88 ~~~~~~l~~~~----------~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+|+|++|+.+. .++.+++|+..+++...... +... ...++|+| +++.|++++.++.+.+||.
T Consensus 136 spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~-~~~~--~~~~~~sp-dg~~l~~~s~~~~~~~~d~ 207 (360)
T d1k32a3 136 SDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT-ENSH--DYAPAFDA-DSKNLYYLSYRSLDPSPDR 207 (360)
T ss_dssp CTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSC-SSSB--EEEEEECT-TSCEEEEEESCCCCCEECS
T ss_pred ccceeeeeeeccccccceeeccccceeeeccccCceeeecc-cccc--cccccccC-CCCEEEEEeCCCceEcccc
Confidence 99999998653 45579999999876654433 2222 25678999 8899999999999999985
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.75 E-value=3.3e-17 Score=103.27 Aligned_cols=143 Identities=15% Similarity=0.092 Sum_probs=102.8
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee--cccCCeEEEEEcCCCCEE-EEeeCCCeEEEEeccccccceeEeecCCCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL--SHKRAVHSAYFSPSGSSL-ATTSFDDTIGIWSGVNFENTAMIHHNNQTG 77 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l-~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~ 77 (154)
+++++.|++|++||+.+.+. ...+. .+...+.+++|+|+|+++ ++++.++.|.+||+.+++............
T Consensus 4 ~vt~~~d~~v~v~D~~s~~~----~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~ 79 (337)
T d1pbyb_ 4 ILAPARPDKLVVIDTEKMAV----DKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE 79 (337)
T ss_dssp EEEEETTTEEEEEETTTTEE----EEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred EEEEcCCCEEEEEECCCCeE----EEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcc
Confidence 57899999999999988763 22232 345568899999999987 466789999999999987765443322211
Q ss_pred ceEeEEEEEEcCCCcEEEEEcc------------CCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCC
Q 038702 78 RWISSFRAIWGWDDSCIFIGNM------------TRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGG 145 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~------------d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 145 (154)
.......++++|++++++++.. +..+.+||..+++.+..+..+. .. ..++++| ++.++++++.+
T Consensus 80 ~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~--~~~~~s~-dg~~l~~~~~~ 155 (337)
T d1pbyb_ 80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR-QI--TMLAWAR-DGSKLYGLGRD 155 (337)
T ss_dssp EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS-SC--CCEEECT-TSSCEEEESSS
T ss_pred cccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccC-Cc--eEEEEcC-CCCEEEEEcCC
Confidence 1112225689999999888763 5678899999998888877433 22 4578999 78888887655
Q ss_pred CeEEEeeC
Q 038702 146 GQVYVWTS 153 (154)
Q Consensus 146 ~~i~~wd~ 153 (154)
+.+||.
T Consensus 156 --~~~~d~ 161 (337)
T d1pbyb_ 156 --LHVMDP 161 (337)
T ss_dssp --EEEEET
T ss_pred --cceeee
Confidence 556765
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=2.9e-17 Score=103.62 Aligned_cols=147 Identities=14% Similarity=0.094 Sum_probs=99.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEee-CCCeEEEEeccccccceeE-eecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNFENTAMI-HHNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~~~~~~~~~~~~~~-~~~~~~~~ 78 (154)
+++++.|++|++|++..... ....+...|.+.+..|+|+|+|++|++++ .|+.|.+|++......... .+.....
T Consensus 7 ~v~~~~~~~I~v~~~~~~~~--l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~- 83 (333)
T d1ri6a_ 7 YIASPESQQIHVWNLNHEGA--LTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG- 83 (333)
T ss_dssp EEEEGGGTEEEEEEECTTSC--EEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-
T ss_pred EEECCCCCcEEEEEEcCCCC--eEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCC-
Confidence 36788999999999976442 11344558899999999999999886555 5899999999876544322 2211111
Q ss_pred eEeEEEEEEcCCCcEEEEEcc-CCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEc-CCCeEEEeeC
Q 038702 79 WISSFRAIWGWDDSCIFIGNM-TRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT-GGGQVYVWTS 153 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~-d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~wd~ 153 (154)
....++|+|+|++|++++. ++.+.+|+.....................+.++| ++++++.++ .+..|.+|+.
T Consensus 84 --~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-d~~~~~~~~~~~~~i~~~~~ 157 (333)
T d1ri6a_ 84 --SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP-DNRTLWVPALKQDRICLFTV 157 (333)
T ss_dssp --CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT-TSSEEEEEEGGGTEEEEEEE
T ss_pred --CceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeee-cceeeeccccccceeeEEEe
Confidence 1124689999999988874 6789999877655443333222222234678888 666655554 5667888875
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.75 E-value=3.6e-16 Score=97.19 Aligned_cols=138 Identities=16% Similarity=0.175 Sum_probs=104.3
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEE-EEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSL-ATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
++++.|++|.+||+.+++ ..........+..++|+|+|+++ ++++.++.|++||+.+.+....+....
T Consensus 6 V~~~~~~~v~v~D~~t~~-----~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~------ 74 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNK-----VTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS------ 74 (301)
T ss_dssp EEETTTTEEEEEETTTTE-----EEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS------
T ss_pred EEECCCCEEEEEECCCCe-----EEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc------
Confidence 678899999999998876 45555566678999999999977 566789999999999887765554322
Q ss_pred eEEEEEEcCCCcEE-EEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCI-FIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l-~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
....+.+++++.++ +++..++.+.+|+..+++....+..+. . ...+.++|+...+++++..++.+.+|+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~dg~~~~~~~~~~~~~~~~~~ 145 (301)
T d1l0qa2 75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK-S--PLGLALSPDGKKLYVTNNGDKTVSVINT 145 (301)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-S--EEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred cccccccccccccccccccccceeeecccccceeeeeccccc-c--ceEEEeecCCCeeeeeeccccceeeeec
Confidence 12356789998855 455677899999999998888877443 2 2467899844445567778899999986
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.63 E-value=1.9e-13 Score=84.65 Aligned_cols=138 Identities=15% Similarity=0.167 Sum_probs=100.1
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCC-CeEEEEeccccccceeEeecCCCCceE
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFD-DTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
+++..++.+.+|+..+.. ......+...+..+.++|++..+++++.+ +.+.+|+....+.........
T Consensus 132 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 200 (301)
T d1l0qa2 132 VTNNGDKTVSVINTVTKA-----VINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA------ 200 (301)
T ss_dssp EEETTTTEEEEEETTTTE-----EEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS------
T ss_pred eeeccccceeeeeccccc-----eeeecccCCCceEEEeeccccceeeecccccccccccccceeeeecccccC------
Confidence 456678889999988765 44555666778999999999988777765 566677766555444333222
Q ss_pred eEEEEEEcCCCcEEEEEcc---CCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEE-EEEcCCCeEEEeeCC
Q 038702 81 SSFRAIWGWDDSCIFIGNM---TRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTL-AGATGGGQVYVWTSD 154 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~---d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~d~~i~~wd~~ 154 (154)
....+++++++..++.++. ++.|++||+.+++.+..+..+. .+..++++| ++++| ++++.|++|++||++
T Consensus 201 ~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~---~~~~va~sp-dg~~l~va~~~~~~i~v~D~~ 274 (301)
T d1l0qa2 201 APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTP-DGKKVYVALSFCNTVSVIDTA 274 (301)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECT-TSSEEEEEETTTTEEEEEETT
T ss_pred CcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCCC---CEEEEEEeC-CCCEEEEEECCCCeEEEEECC
Confidence 2335678999998776543 4689999999999888876432 236789999 66654 788899999999973
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.63 E-value=6.1e-15 Score=96.67 Aligned_cols=151 Identities=9% Similarity=-0.040 Sum_probs=99.8
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCcee-ecccCCeEEEEEcCCCCEE-EEeeCCCeEEEEeccccccceeEeecCC---
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKV-LSHKRAVHSAYFSPSGSSL-ATTSFDDTIGIWSGVNFENTAMIHHNNQ--- 75 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l-~~~~~d~~v~~~~~~~~~~~~~~~~~~~--- 75 (154)
+++++.|+.+++||+.+.+......... .+|.+.+.+..|+|||+++ +++..++.+++||..+.+..........
T Consensus 76 l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~ 155 (432)
T d1qksa2 76 LFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYD 155 (432)
T ss_dssp EEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTT
T ss_pred EEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCcccc
Confidence 4678899999999998765311111111 2566677777888999976 6777899999999998876654431100
Q ss_pred ---CCceEeEEEEEEcCCCcEE-EEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEc-CCCeEEE
Q 038702 76 ---TGRWISSFRAIWGWDDSCI-FIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT-GGGQVYV 150 (154)
Q Consensus 76 ---~~~~~~~~~~~~~~~~~~l-~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~ 150 (154)
....-....+.++|++..+ ++...++.|.+|+..+++.......+... ....+.++| +++++++++ .++.+.+
T Consensus 156 ~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~-~~~~~~~sp-dg~~~~va~~~~~~v~v 233 (432)
T d1qksa2 156 EQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAER-FLHDGGLDG-SHRYFITAANARNKLVV 233 (432)
T ss_dssp TCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCS-SEEEEEECT-TSCEEEEEEGGGTEEEE
T ss_pred ceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccC-ccccceECC-CCCEEEEeccccceEEE
Confidence 0001122345789998765 55667899999999887755443322222 336789999 667655554 5667888
Q ss_pred eeC
Q 038702 151 WTS 153 (154)
Q Consensus 151 wd~ 153 (154)
+|.
T Consensus 234 ~d~ 236 (432)
T d1qksa2 234 IDT 236 (432)
T ss_dssp EET
T ss_pred eec
Confidence 876
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.61 E-value=7.3e-15 Score=92.69 Aligned_cols=144 Identities=13% Similarity=0.040 Sum_probs=94.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee--cccCCeEEEEEcCCCCEE-EEeeCCCeEEEEeccccccceeEeecCCCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL--SHKRAVHSAYFSPSGSSL-ATTSFDDTIGIWSGVNFENTAMIHHNNQTG 77 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l-~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~ 77 (154)
|++++.|++|.+||+.+++ ..... .|...+.+++|+|+|+++ +++..++.|.+||+.+.+............
T Consensus 11 l~~~~~~~~v~v~D~~t~~-----~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~ 85 (346)
T d1jmxb_ 11 MIVTNYPNNLHVVDVASDT-----VYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPG 85 (346)
T ss_dssp EEEEETTTEEEEEETTTTE-----EEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTT
T ss_pred EEEEcCCCEEEEEECCCCC-----EEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccccccc
Confidence 5789999999999999876 34432 556678899999999987 555679999999999887765443322111
Q ss_pred -ceEeEEEEEEcCCCcEEEEEc------------cCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcC
Q 038702 78 -RWISSFRAIWGWDDSCIFIGN------------MTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATG 144 (154)
Q Consensus 78 -~~~~~~~~~~~~~~~~l~~~~------------~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 144 (154)
.......++++|+|+++++++ .++.+.+|+..+++....+..+........+.+.+ ++.+++++
T Consensus 86 ~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-- 162 (346)
T d1jmxb_ 86 EVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD-DGSLYVAG-- 162 (346)
T ss_dssp EEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT-TSCEEEES--
T ss_pred ccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecC-CCEEEEeC--
Confidence 111122568999999887765 36778889888777655444322222212334444 55555443
Q ss_pred CCeEEEeeC
Q 038702 145 GGQVYVWTS 153 (154)
Q Consensus 145 d~~i~~wd~ 153 (154)
+.+.+||+
T Consensus 163 -~~~~~~~~ 170 (346)
T d1jmxb_ 163 -PDIYKMDV 170 (346)
T ss_dssp -SSEEEECT
T ss_pred -CcceEEEc
Confidence 34666664
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.56 E-value=2.6e-14 Score=93.40 Aligned_cols=103 Identities=9% Similarity=-0.004 Sum_probs=75.9
Q ss_pred CEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeE--EeCCC-
Q 038702 45 SSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVAT--LQSPY- 121 (154)
Q Consensus 45 ~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~--~~~~~- 121 (154)
.++++.+.||+|++||+.+.+....+.... ....++|+|||+++++++.|+++++||+.+++.... +....
T Consensus 33 ~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~------~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~ 106 (426)
T d1hzua2 33 LFSVTLRDAGQIALVDGDSKKIVKVIDTGY------AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIE 106 (426)
T ss_dssp EEEEEETTTTEEEEEETTTCSEEEEEECCS------SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSE
T ss_pred EEEEEEcCCCEEEEEECCCCcEEEEEeCCC------CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCC
Confidence 356778899999999999988877665432 134678999999999999999999999998875543 33211
Q ss_pred cCCcceEEEecCCCccEE-EEEcCCCeEEEeeCC
Q 038702 122 ISAIPCRFHAHPHQVGTL-AGATGGGQVYVWTSD 154 (154)
Q Consensus 122 ~~~~~~~~~~~~~~~~~l-~~~~~d~~i~~wd~~ 154 (154)
......+.+|+| +++++ +++..++.+.+||.+
T Consensus 107 ~~~~~~s~~~sp-DG~~l~v~~~~~~~v~i~d~~ 139 (426)
T d1hzua2 107 ARSVESSKFKGY-EDRYTIAGAYWPPQFAIMDGE 139 (426)
T ss_dssp EEEEEECCSTTC-TTTEEEEEEEESSEEEEEETT
T ss_pred CcceEEeeeecC-CCCEEEEeecCCCeEEEEcCC
Confidence 112224567788 67765 555689999999963
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.45 E-value=1.8e-13 Score=90.23 Aligned_cols=133 Identities=10% Similarity=-0.021 Sum_probs=90.9
Q ss_pred CCCcEEEEEccCCCCCCC-CCceeecccCCeEEEEEcCCCCEEEEeeC---------CCeEEEEeccccccceeEeecCC
Q 038702 6 TDGTACIWDLRSMATDKP-EPTKVLSHKRAVHSAYFSPSGSSLATTSF---------DDTIGIWSGVNFENTAMIHHNNQ 75 (154)
Q Consensus 6 ~d~~v~vw~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~v~~~~~~~~~~~~~~~~~~~ 75 (154)
.|+.+.+||+.+++.... ....+..|...|.++.|||||++|+.++. ++.+.+||+.+++......+..
T Consensus 34 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~- 112 (470)
T d2bgra1 34 QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPN- 112 (470)
T ss_dssp SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCT-
T ss_pred cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccccCCc-
Confidence 578899999998763110 01112245678999999999999988753 5678899999876554333322
Q ss_pred CCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcC----------------CcceEEEecCCCccEE
Q 038702 76 TGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYIS----------------AIPCRFHAHPHQVGTL 139 (154)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~l 139 (154)
....+.|+|||++++.. .++.+++|+..+++..+........ .....+.|+| +++.|
T Consensus 113 -----~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSP-DGk~i 185 (470)
T d2bgra1 113 -----NTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFL 185 (470)
T ss_dssp -----TEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEE
T ss_pred -----cccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECC-CCCcc
Confidence 23357899999999985 5778999999988765543322111 1113467999 88999
Q ss_pred EEEcCCC
Q 038702 140 AGATGGG 146 (154)
Q Consensus 140 ~~~~~d~ 146 (154)
+....|.
T Consensus 186 a~~~~d~ 192 (470)
T d2bgra1 186 AYAQFND 192 (470)
T ss_dssp EEEEEEC
T ss_pred ceeEecC
Confidence 8887543
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.38 E-value=4.2e-12 Score=79.83 Aligned_cols=107 Identities=10% Similarity=0.108 Sum_probs=81.5
Q ss_pred ecCCCcEEEEEccCCCCCCCCCce-eecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeE
Q 038702 4 SSTDGTACIWDLRSMATDKPEPTK-VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISS 82 (154)
Q Consensus 4 ~~~d~~v~vw~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (154)
+..++.+.+|+...... ... ...|...+..+.+++++.+++.... +.+.+||..+.+......... ..
T Consensus 226 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~~~------~~ 294 (346)
T d1jmxb_ 226 ADLLYGYLSVDLKTGKT----HTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANLDH------TY 294 (346)
T ss_dssp CEEEEEEEEEETTTCCE----EEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEECSS------CC
T ss_pred ccCCceEEEEECCCCce----EEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEcCCC------CE
Confidence 34455677888776553 222 3368888999999998888777654 579999999887766554332 12
Q ss_pred EEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCC
Q 038702 83 FRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPY 121 (154)
Q Consensus 83 ~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 121 (154)
..++|+|||+++++++.|+.|++||.++++.+.+++.+.
T Consensus 295 ~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~ 333 (346)
T d1jmxb_ 295 YCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPG 333 (346)
T ss_dssp CEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSS
T ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECCC
Confidence 367899999999999999999999999999999988544
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.38 E-value=6e-12 Score=78.83 Aligned_cols=105 Identities=9% Similarity=0.043 Sum_probs=81.4
Q ss_pred cCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEE
Q 038702 5 STDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFR 84 (154)
Q Consensus 5 ~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
..++.+.+|+...+.. .......+...+..+.++|++.+++.+ ++.+++||+.+.+.......... ...
T Consensus 216 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~------~~~ 284 (337)
T d1pbyb_ 216 AYRTGLLTMDLETGEM---AMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHS------YYS 284 (337)
T ss_dssp GEEEEEEEEETTTCCE---EEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSC------CCE
T ss_pred ccCccEEEEEcCCCcE---EEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcCCCC------EEE
Confidence 4455688888876653 122233677888999999999988766 58899999999887766654331 235
Q ss_pred EEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCC
Q 038702 85 AIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSP 120 (154)
Q Consensus 85 ~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 120 (154)
++|+|+|++|++++.++.|++||.++++.+.+++.+
T Consensus 285 ~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~~ 320 (337)
T d1pbyb_ 285 VNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp EEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred EEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEECC
Confidence 789999999999999999999999999999888753
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=1.7e-11 Score=76.83 Aligned_cols=104 Identities=11% Similarity=0.053 Sum_probs=67.8
Q ss_pred EEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEc-cCCeEEEecCCCccceeEEeCC-CcC
Q 038702 46 SLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGN-MTRTVEVISPAQRRSVATLQSP-YIS 123 (154)
Q Consensus 46 ~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~~-~~~ 123 (154)
.+++++.|++|++|++............. ++..+ ..++|+|||++|++++ .|+.|++|++.......++..+ ...
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~-~~~~v--~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~ 82 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVD-VPGQV--QPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP 82 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSCC--CCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEc-CCCCE--eEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccC
Confidence 35677899999999997654433332111 11112 2568999999885554 5899999999866544333322 112
Q ss_pred CcceEEEecCCCccEEEEEc-CCCeEEEeeC
Q 038702 124 AIPCRFHAHPHQVGTLAGAT-GGGQVYVWTS 153 (154)
Q Consensus 124 ~~~~~~~~~~~~~~~l~~~~-~d~~i~~wd~ 153 (154)
..+..++++| ++++|++++ .++.+.+|+.
T Consensus 83 ~~p~~l~~sp-Dg~~l~v~~~~~~~v~~~~~ 112 (333)
T d1ri6a_ 83 GSLTHISTDH-QGQFVFVGSYNAGNVSVTRL 112 (333)
T ss_dssp SCCSEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred CCceEEEEcC-CCCEEeecccCCCceeeecc
Confidence 2235789999 778777776 5778888864
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.29 E-value=2.4e-10 Score=72.76 Aligned_cols=136 Identities=17% Similarity=0.083 Sum_probs=89.3
Q ss_pred CCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEee----------CCCeEEEEeccccccceeEeecCC
Q 038702 6 TDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTS----------FDDTIGIWSGVNFENTAMIHHNNQ 75 (154)
Q Consensus 6 ~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~v~~~~~~~~~~~~~~~~~~~ 75 (154)
..+.|.+||..+++. ...+..+.. ..+.|+|+|+++++++ .++.|.+||..+.+..........
T Consensus 45 ~~~~v~v~D~~tg~~----~~~~~~~~~--~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~ 118 (373)
T d2madh_ 45 AIIQQWVLDAGSGSI----LGHVNGGFL--PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDA 118 (373)
T ss_pred CCceEEEEECCCCCE----EEEEeCCCC--ccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCc
Confidence 345688999887763 333333333 3799999999998875 467899999998877654432211
Q ss_pred CCceE--eEEEEEEcCCCcEEEEEc--cCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEe
Q 038702 76 TGRWI--SSFRAIWGWDDSCIFIGN--MTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 151 (154)
Q Consensus 76 ~~~~~--~~~~~~~~~~~~~l~~~~--~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w 151 (154)
..... ....+.|+++++.++... .++.+.+|+....+....... ...+.++|.....+++.+.|+.+.+|
T Consensus 119 ~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~s~~g~~~~v~~~~dg~~~~~ 192 (373)
T d2madh_ 119 PRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSS------PTCYHIHPGAPSTFYLLCAQGGLAKT 192 (373)
T ss_pred ceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEecc------ceeEEEecCCCcEEEEEcCCCeEEEE
Confidence 10000 011356788888665554 456788898887765544432 13567778455567889999999999
Q ss_pred eC
Q 038702 152 TS 153 (154)
Q Consensus 152 d~ 153 (154)
|.
T Consensus 193 ~~ 194 (373)
T d2madh_ 193 DH 194 (373)
T ss_pred Ec
Confidence 86
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.24 E-value=2e-09 Score=68.43 Aligned_cols=148 Identities=9% Similarity=-0.012 Sum_probs=88.4
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceee--cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVL--SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
++.+.|+.+.+|+............... ++......+.+.+++ .++..+.++.+.+|+...................
T Consensus 181 v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 259 (373)
T d2madh_ 181 YLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSG-RIVWPVYSGKILQADISAAGATNKAPIDALSGGR 259 (373)
T ss_pred EEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCc-eEEEecCCceEEEEEcCCCeEEEEEeeccccCcE
Confidence 5678899999999877653111111111 122223445555555 4455667888999998876543222111100000
Q ss_pred -------EeEEEEEEcCCCc----------EEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCcc--EEE
Q 038702 80 -------ISSFRAIWGWDDS----------CIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVG--TLA 140 (154)
Q Consensus 80 -------~~~~~~~~~~~~~----------~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~ 140 (154)
......++++++. .++....++.+.+||..+++.+..+... .. ...++|+| +++ +++
T Consensus 260 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~-~~--~~~~a~sp-DG~~~l~v 335 (373)
T d2madh_ 260 KADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG-HD--VDAISVAQ-DGGPDLYA 335 (373)
T ss_pred EeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCC-CC--eeEEEECC-CCCEEEEE
Confidence 0011233444444 4455567788999999999988887632 22 35789999 666 457
Q ss_pred EEcCCCeEEEeeCC
Q 038702 141 GATGGGQVYVWTSD 154 (154)
Q Consensus 141 ~~~~d~~i~~wd~~ 154 (154)
+++.|++|++||+.
T Consensus 336 t~~~d~~v~v~D~~ 349 (373)
T d2madh_ 336 LSAGTEVLHIYDAG 349 (373)
T ss_pred EeCCCCeEEEEECC
Confidence 88999999999973
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.19 E-value=2.9e-10 Score=71.79 Aligned_cols=115 Identities=8% Similarity=-0.047 Sum_probs=78.5
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceee--------cccCCeEEEEEcCCCCEEEEeeCC----------CeEEEEeccc
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVL--------SHKRAVHSAYFSPSGSSLATTSFD----------DTIGIWSGVN 63 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~d----------~~v~~~~~~~ 63 (154)
+.++.++.+++|++..+........... ........+++++++..++....+ ..|.+||..+
T Consensus 210 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t 289 (355)
T d2bbkh_ 210 VWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT 289 (355)
T ss_dssp EEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT
T ss_pred EEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCC
Confidence 5677899999999987653111111000 012334568899999887765443 4699999998
Q ss_pred cccceeEeecCCCCceEeEEEEEEcCCCc--EEEEEccCCeEEEecCCCccceeEEeCCCc
Q 038702 64 FENTAMIHHNNQTGRWISSFRAIWGWDDS--CIFIGNMTRTVEVISPAQRRSVATLQSPYI 122 (154)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 122 (154)
.+....+.... ....++|+|+|+ +++++..|+.|++||.++++.+.++..+..
T Consensus 290 ~~~~~~~~~~~------~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~ 344 (355)
T d2bbkh_ 290 GERLAKFEMGH------EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGH 344 (355)
T ss_dssp CCEEEEEEEEE------EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCS
T ss_pred CcEEEEecCCC------CEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCC
Confidence 87665444322 233678999997 456677899999999999999999875433
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.16 E-value=2.7e-10 Score=71.97 Aligned_cols=120 Identities=13% Similarity=0.067 Sum_probs=80.3
Q ss_pred ccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCC------C-ceEeEEEEEEcCCCcEEEEEccC---
Q 038702 31 HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQT------G-RWISSFRAIWGWDDSCIFIGNMT--- 100 (154)
Q Consensus 31 ~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~l~~~~~d--- 100 (154)
+...+....+.+++..++.++.++.+.+|++............... . .......+.+++++..++....+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~ 272 (355)
T d2bbkh_ 193 DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDE 272 (355)
T ss_dssp TSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCT
T ss_pred ecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCc
Confidence 3344556678888888999999999999999876543221110000 0 00000124678888877765433
Q ss_pred -------CeEEEecCCCccceeEEeCCCcCCcceEEEecCCCcc--EEEEEcCCCeEEEeeCC
Q 038702 101 -------RTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVG--TLAGATGGGQVYVWTSD 154 (154)
Q Consensus 101 -------~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~d~~i~~wd~~ 154 (154)
..|.+||..+++.+..+.... ....++++| +++ +++++..|+.|++||++
T Consensus 273 ~~~~~~~~~v~v~d~~t~~~~~~~~~~~---~~~~~a~sp-DG~~~l~v~~~~d~~i~v~D~~ 331 (355)
T d2bbkh_ 273 WRHKTASRFVVVLDAKTGERLAKFEMGH---EIDSINVSQ-DEKPLLYALSTGDKTLYIHDAE 331 (355)
T ss_dssp TCTTSCEEEEEEEETTTCCEEEEEEEEE---EECEEEECC-SSSCEEEEEETTTTEEEEEETT
T ss_pred eeecCCCCeEEEEeCCCCcEEEEecCCC---CEEEEEEcC-CCCeEEEEEECCCCEEEEEECC
Confidence 479999999999888776332 235789999 665 46777889999999973
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.14 E-value=1.2e-09 Score=69.70 Aligned_cols=59 Identities=10% Similarity=-0.086 Sum_probs=41.0
Q ss_pred eecCCCcEEEEEccCCCCCCCCCceeecc-------cCCeEEEEEcCCCCEEEEee-CCCeEEEEeccccc
Q 038702 3 TSSTDGTACIWDLRSMATDKPEPTKVLSH-------KRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNFE 65 (154)
Q Consensus 3 ~~~~d~~v~vw~~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~-~d~~v~~~~~~~~~ 65 (154)
.|+.|+.|.+||..+.+. ......+ ......++|+|+|++++++. .++.+.+||+.+.+
T Consensus 91 ~g~~d~~v~v~D~~t~~~----~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~ 157 (368)
T d1mdah_ 91 KGKRTDYVEVFDPVTFLP----IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGAS 157 (368)
T ss_dssp SSSEEEEEEEECTTTCCE----EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTE
T ss_pred ccccCCeEEEEECCCCcE----eeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence 456688899999987653 2222111 12234689999999988776 57899999987654
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.13 E-value=6.4e-10 Score=70.93 Aligned_cols=137 Identities=15% Similarity=-0.016 Sum_probs=85.5
Q ss_pred cCCCc--EEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEee----------CCCeEEEEeccccccceeEee
Q 038702 5 STDGT--ACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTS----------FDDTIGIWSGVNFENTAMIHH 72 (154)
Q Consensus 5 ~~d~~--v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~v~~~~~~~~~~~~~~~~ 72 (154)
..++. +.+||..+++. ......+..+ .+.|+|+|+.+++++ .|+.|.+||..+.+.......
T Consensus 41 ~~~g~~~~~~~d~~~~~~----~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~ 114 (368)
T d1mdah_ 41 YFAGTTENWVSCAGCGVT----LGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIEL 114 (368)
T ss_dssp TTCSSEEEEEEETTTTEE----EEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEE
T ss_pred cCCCcceEEEEeCCCCcE----EEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecC
Confidence 44454 55557666552 2223333333 589999999888754 478899999998877654432
Q ss_pred cCCCC--ceEeEEEEEEcCCCcEEEEEc-cCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEE
Q 038702 73 NNQTG--RWISSFRAIWGWDDSCIFIGN-MTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVY 149 (154)
Q Consensus 73 ~~~~~--~~~~~~~~~~~~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 149 (154)
..... .......++|+|||++++++. .++.+.+||+.+++.+..+..+..... ... ....++..+.||++.
T Consensus 115 p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~----~~~--~~~~~v~~~~Dg~~~ 188 (368)
T d1mdah_ 115 PDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI----HPG--AAATHYLGSCPASLA 188 (368)
T ss_dssp TTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC----EEE--ETTEEECCCCTTSCE
T ss_pred CccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE----ccC--CCceEEEEcCCCCEE
Confidence 11000 000011357999999988775 578999999999998888875433221 111 234556666777766
Q ss_pred EeeC
Q 038702 150 VWTS 153 (154)
Q Consensus 150 ~wd~ 153 (154)
++++
T Consensus 189 ~~~~ 192 (368)
T d1mdah_ 189 ASDL 192 (368)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 6654
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.04 E-value=8e-10 Score=72.64 Aligned_cols=109 Identities=14% Similarity=0.081 Sum_probs=77.5
Q ss_pred EEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecC--CCCceEeEEEEEEcCCCcEEEEEcc---------CCeEE
Q 038702 36 HSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNN--QTGRWISSFRAIWGWDDSCIFIGNM---------TRTVE 104 (154)
Q Consensus 36 ~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~---------d~~i~ 104 (154)
..+.|.++++++.. .++.+.+||+.+++....+.... .....+ ....|+||+++|+.++. ++.+.
T Consensus 20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i--~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~ 95 (470)
T d2bgra1 20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSI--NDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (470)
T ss_dssp CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCC--CEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCcc--ceeEECCCCCEEEEEECCcceeeeccCceEE
Confidence 35789999987764 47889999999988765554221 122222 35679999999998753 56789
Q ss_pred EecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 105 VISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 105 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+||+.+++.. .+..+.... ..+.|+| ++..++.. .++.+++|+.
T Consensus 96 l~d~~~~~~~-~l~~~~~~~--~~~~~SP-DG~~ia~~-~~~~l~~~~~ 139 (470)
T d2bgra1 96 IYDLNKRQLI-TEERIPNNT--QWVTWSP-VGHKLAYV-WNNDIYVKIE 139 (470)
T ss_dssp EEETTTTEEC-CSSCCCTTE--EEEEECS-STTCEEEE-ETTEEEEESS
T ss_pred EEECCCCccc-ccccCCccc--ccccccc-CcceeeEe-ecccceEEEC
Confidence 9999988743 444443333 5789999 88888885 5678898875
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.88 E-value=4.1e-07 Score=57.98 Aligned_cols=147 Identities=9% Similarity=-0.004 Sum_probs=85.2
Q ss_pred CCCcEEEEEccCCCCCCCCCceee--cccCCeEEEEEcCCCCEEEEee-CCCeEEEEeccccccceeEeec---------
Q 038702 6 TDGTACIWDLRSMATDKPEPTKVL--SHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNFENTAMIHHN--------- 73 (154)
Q Consensus 6 ~d~~v~vw~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~-~d~~v~~~~~~~~~~~~~~~~~--------- 73 (154)
....|.+|+........ ...... ......+.+.|+|+++++++.. .+++|.+|++............
T Consensus 165 g~d~v~~~~~~~~g~~~-~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~ 243 (365)
T d1jofa_ 165 TANKLWTHRKLASGEVE-LVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI 243 (365)
T ss_dssp TTTEEEEEEECTTSCEE-EEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC
T ss_pred CCCEEEEEEccCCCcee-eccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccc
Confidence 34567777765433200 001111 3456788999999999886655 5889999998765543222110
Q ss_pred -----CCCCceEeEEEEEEcCCCcEEEEEcc------CCeEEEecCCCccceeE----EeCCCcCCcceEEEecCCCccE
Q 038702 74 -----NQTGRWISSFRAIWGWDDSCIFIGNM------TRTVEVISPAQRRSVAT----LQSPYISAIPCRFHAHPHQVGT 138 (154)
Q Consensus 74 -----~~~~~~~~~~~~~~~~~~~~l~~~~~------d~~i~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 138 (154)
...........+.++|+|++|+++.. ...|..|++.....+.. ......+..+..++++|.++++
T Consensus 244 ~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~ 323 (365)
T d1jofa_ 244 PDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEW 323 (365)
T ss_dssp CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTE
T ss_pred cccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCE
Confidence 00111122335678999999988743 22377777654322221 1112223334568888866776
Q ss_pred EEEE-cCCCeEEEeeC
Q 038702 139 LAGA-TGGGQVYVWTS 153 (154)
Q Consensus 139 l~~~-~~d~~i~~wd~ 153 (154)
|+.+ ..++.|.+|++
T Consensus 324 l~va~~~s~~v~v~~~ 339 (365)
T d1jofa_ 324 MAITDDQEGWLEIYRW 339 (365)
T ss_dssp EEEECSSSCEEEEEEE
T ss_pred EEEEeCCCCeEEEEEE
Confidence 6555 57899999975
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.75 E-value=1.2e-06 Score=56.88 Aligned_cols=138 Identities=10% Similarity=0.033 Sum_probs=84.8
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCcee--ecccCCeEEEEEcCCCCE--EEEeeCCC-----------------eEEEEe
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKV--LSHKRAVHSAYFSPSGSS--LATTSFDD-----------------TIGIWS 60 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~--l~~~~~d~-----------------~v~~~~ 60 (154)
++...++.|.++|+++.+. .+. ..+...+..++|+|+++. ++..+.+. .+..+|
T Consensus 88 V~d~~~~rVavIDl~t~k~-----~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD 162 (441)
T d1qnia2 88 INDKANTRVARIRLDIMKT-----DKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAID 162 (441)
T ss_dssp EEETTTTEEEEEETTTTEE-----EEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEE
T ss_pred EEcCCCCEEEEEECCCCcE-----eeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeec
Confidence 4456778899999988763 332 256778999999999984 33333322 123456
Q ss_pred ccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccC----------------------------------------
Q 038702 61 GVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMT---------------------------------------- 100 (154)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------------------------------------- 100 (154)
..+.+.......... ...+.++|+|+++++.+.+
T Consensus 163 ~~t~~v~~qI~v~~~------p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~ 236 (441)
T d1qnia2 163 AETMDVAWQVIVDGN------LDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGD 236 (441)
T ss_dssp TTTCSEEEEEEESSC------CCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred CccceeeEEEecCCC------ccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCC
Confidence 555544433322211 1135688888887776532
Q ss_pred -CeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEE-EEEcCCCeEEEeeCC
Q 038702 101 -RTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTL-AGATGGGQVYVWTSD 154 (154)
Q Consensus 101 -~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~d~~i~~wd~~ 154 (154)
+.+.+++....+.+..+..+.. +..+.++| +++++ +++..+++|.+||++
T Consensus 237 ~~v~vvd~~~~~~v~~~IPvgks---PhGv~vSP-DGkyl~~~~~~~~tvsv~d~~ 288 (441)
T d1qnia2 237 SKVPVVDGRGESEFTRYIPVPKN---PHGLNTSP-DGKYFIANGKLSPTVSVIAID 288 (441)
T ss_dssp CCCCEEECSSSCSSEEEECCBSS---CCCEEECT-TSCEEEEECTTSSBEEEEEGG
T ss_pred CCcEEEEcccCCceEEEEeCCCC---ccCceECC-CCCEEEEeCCcCCcEEEEEee
Confidence 3444444445555555553322 34678999 67765 667789999999973
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.73 E-value=3.4e-06 Score=51.61 Aligned_cols=116 Identities=8% Similarity=0.035 Sum_probs=80.5
Q ss_pred ccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEcc-CCeEEEecCC
Q 038702 31 HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNM-TRTVEVISPA 109 (154)
Q Consensus 31 ~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~i~~~~ 109 (154)
+......+++.++++.+++....+.|.++|.... ....+... +.......+++.++|+.+++-.. ++.|.+|+.
T Consensus 155 ~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~-~~~~~g~~---g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~- 229 (279)
T d1q7fa_ 155 HLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ-YLRQIGGE---GITNYPIGVGINSNGEILIADNHNNFNLTIFTQ- 229 (279)
T ss_dssp TCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC-EEEEESCT---TTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-
T ss_pred cccccceeeeccceeEEeeeccccceeeeecCCc-eeeeeccc---ccccCCcccccccCCeEEEEECCCCcEEEEECC-
Confidence 4567788999999998888888999999997543 22222221 11123346688999997776543 457999984
Q ss_pred CccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 110 QRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+++.+.++........+..++..| ++.+++ ++.++.|++|..
T Consensus 230 ~G~~~~~~~~~~~~~~p~~vav~~-dG~l~V-~~~n~~v~~fr~ 271 (279)
T d1q7fa_ 230 DGQLISALESKVKHAQCFDVALMD-DGSVVL-ASKDYRLYIYRY 271 (279)
T ss_dssp TSCEEEEEEESSCCSCEEEEEEET-TTEEEE-EETTTEEEEEEC
T ss_pred CCCEEEEEeCCCCCCCEeEEEEeC-CCcEEE-EeCCCeEEEEEe
Confidence 577777776444444557888998 766555 457899999975
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.63 E-value=9.2e-07 Score=57.49 Aligned_cols=137 Identities=8% Similarity=-0.092 Sum_probs=85.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCC--------------------------CCceeecccCCeEEEEEcCCCCEEEEe-eCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKP--------------------------EPTKVLSHKRAVHSAYFSPSGSSLATT-SFD 53 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~--------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d 53 (154)
+++|+.+|+|++|++.+++.... ....-..|........++|||++++.. ..+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~ 93 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN 93 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence 46889999999999986542000 000001233445555567899988655 468
Q ss_pred CeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCc--EEEEEccCC-----------------eEEEecCCCccce
Q 038702 54 DTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDS--CIFIGNMTR-----------------TVEVISPAQRRSV 114 (154)
Q Consensus 54 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~d~-----------------~i~i~~~~~~~~~ 114 (154)
++|.++|+.+++........... ....++|+|+++ |++..+.+. .+..+|..+.+..
T Consensus 94 ~rVavIDl~t~k~~~ii~iP~g~----gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~ 169 (441)
T d1qnia2 94 TRVARIRLDIMKTDKITHIPNVQ----AIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVA 169 (441)
T ss_dssp TEEEEEETTTTEEEEEEECTTCC----CEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEE
T ss_pred CEEEEEECCCCcEeeEEecCCCC----CccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceee
Confidence 89999999998877655432221 123567899988 444444332 2355777777766
Q ss_pred eEEeCCCcCCcceEEEecCCCccEEEEEcCC
Q 038702 115 ATLQSPYISAIPCRFHAHPHQVGTLAGATGG 145 (154)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 145 (154)
.++..... ...+.++| ++.++.+.+.+
T Consensus 170 ~qI~v~~~---p~~v~~sp-dGk~a~vt~~n 196 (441)
T d1qnia2 170 WQVIVDGN---LDNTDADY-TGKYATSTCYN 196 (441)
T ss_dssp EEEEESSC---CCCEEECS-SSSEEEEEESC
T ss_pred EEEecCCC---ccceEECC-CCCEEEEEecC
Confidence 66653322 24578899 77777766654
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.62 E-value=3.8e-06 Score=51.93 Aligned_cols=113 Identities=11% Similarity=0.043 Sum_probs=77.7
Q ss_pred CCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCcc
Q 038702 33 RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRR 112 (154)
Q Consensus 33 ~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~ 112 (154)
..+..++++|+|+++++...+++|..++..... ........ ....++++++|+++++...++.+..++.....
T Consensus 28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~-~~~~~~~~------~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~ 100 (302)
T d2p4oa1 28 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-QIHATVEG------KVSGLAFTSNGDLVATGWNADSIPVVSLVKSD 100 (302)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-EEEEECSS------EEEEEEECTTSCEEEEEECTTSCEEEEEECTT
T ss_pred CCcCCEEECCCCCEEEEeCCCCEEEEEeCCCCE-EEEEcCCC------CcceEEEcCCCCeEEEecCCceEEEEEecccc
Confidence 468899999999999999999999888865432 22221111 23467899999999888888888777765332
Q ss_pred -ceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 113 -SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 113 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
....+...........+++.+ +++++++.+.++.+..+|.
T Consensus 101 ~~~~~~~~~~~~~~~n~i~~~~-~g~~~v~~~~~~~i~~~~~ 141 (302)
T d2p4oa1 101 GTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDV 141 (302)
T ss_dssp SCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEET
T ss_pred cceeeccccCCccccceeEEcc-CCCEEeeccccccceeeec
Confidence 222222222333446788888 7788888888888877765
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=1.1e-06 Score=57.73 Aligned_cols=129 Identities=10% Similarity=0.079 Sum_probs=82.9
Q ss_pred cCCCcEEEEEccCCCCCCCCCceee-c---ccCCeEEEEEcCCCCEEEEee---------CCCeEEEEeccccccceeEe
Q 038702 5 STDGTACIWDLRSMATDKPEPTKVL-S---HKRAVHSAYFSPSGSSLATTS---------FDDTIGIWSGVNFENTAMIH 71 (154)
Q Consensus 5 ~~d~~v~vw~~~~~~~~~~~~~~~~-~---~~~~v~~~~~~~~~~~l~~~~---------~d~~v~~~~~~~~~~~~~~~ 71 (154)
..+|.+.+||+.+++. ..+. . ..-.+....|||++++++... ..+.+.++|+.++....+..
T Consensus 34 ~~~g~i~~~~~~~~~~-----~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~ 108 (465)
T d1xfda1 34 EQKGTVRLWNVETNTS-----TVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDP 108 (465)
T ss_dssp CSSSCEEEBCGGGCCC-----EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCC
T ss_pred eCCCcEEEEECCCCCE-----EEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccC
Confidence 3577899999987753 2222 1 223567888999999887653 35778899998876544332
Q ss_pred ecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcC----------------CcceEEEecCCC
Q 038702 72 HNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYIS----------------AIPCRFHAHPHQ 135 (154)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~ 135 (154)
.....+ .+. .+.|+|+|+.++... ++.|.+.+...++..+........ .....+-|+| +
T Consensus 109 ~~~~~~-~l~--~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSP-D 183 (465)
T d1xfda1 109 PEVSNA-KLQ--YAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-D 183 (465)
T ss_dssp TTCCSC-CCS--BCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-T
T ss_pred ccCCcc-ccc--eeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECC-C
Confidence 211111 111 357999999988765 678898888777655444322111 1124677999 8
Q ss_pred ccEEEEEc
Q 038702 136 VGTLAGAT 143 (154)
Q Consensus 136 ~~~l~~~~ 143 (154)
+..|+...
T Consensus 184 gk~iaf~~ 191 (465)
T d1xfda1 184 GTRLAYAA 191 (465)
T ss_dssp SSEEEEEE
T ss_pred CCeEEEEE
Confidence 88888765
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.48 E-value=2.6e-05 Score=48.50 Aligned_cols=118 Identities=9% Similarity=0.081 Sum_probs=77.4
Q ss_pred CCeEEEEEcCCCC-----EEEEeeCCCeEEEEecccccccee---EeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEE
Q 038702 33 RAVHSAYFSPSGS-----SLATTSFDDTIGIWSGVNFENTAM---IHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVE 104 (154)
Q Consensus 33 ~~v~~~~~~~~~~-----~l~~~~~d~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 104 (154)
..-+.++|+|++. ++++-+..+.|..+++........ +......... ..-.+++..+|+++++....+.|.
T Consensus 172 ~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~pdGiavD~~GnlyVa~~~~g~I~ 250 (314)
T d1pjxa_ 172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEG-GADGMDFDEDNNLLVANWGSSHIE 250 (314)
T ss_dssp SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSC-EEEEEEEBTTCCEEEEEETTTEEE
T ss_pred ceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccc-cceeeEEecCCcEEEEEcCCCEEE
Confidence 3446788988764 445556788899888765433221 1111111110 112467889999888877788999
Q ss_pred EecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 105 VISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 105 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+||...++.+..+..+.. .+..++|.|+...++++.+.++.|...++
T Consensus 251 ~~dp~~g~~~~~i~~p~~--~~t~~afg~d~~~lyVt~~~~g~i~~~~~ 297 (314)
T d1pjxa_ 251 VFGPDGGQPKMRIRCPFE--KPSNLHFKPQTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp EECTTCBSCSEEEECSSS--CEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred EEeCCCCEEEEEEECCCC--CEEEEEEeCCCCEEEEEECCCCcEEEEEC
Confidence 999998887777764432 23578898833347788888899988775
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.48 E-value=2.7e-05 Score=49.43 Aligned_cols=108 Identities=6% Similarity=-0.031 Sum_probs=65.5
Q ss_pred CCeEEEEEcCCCCEEEEeeC-CCeEEEEeccccccceeEeec--CCCCceEeEEEEEEcCCCcEEEEEc-cCCeEEEecC
Q 038702 33 RAVHSAYFSPSGSSLATTSF-DDTIGIWSGVNFENTAMIHHN--NQTGRWISSFRAIWGWDDSCIFIGN-MTRTVEVISP 108 (154)
Q Consensus 33 ~~v~~~~~~~~~~~l~~~~~-d~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~i~~~ 108 (154)
..+.++.|+|+|++++++.. ...|.+|+............. ...+. ....++|+|+++++.... .++.|.+|++
T Consensus 145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~--gPr~i~f~pdg~~~yv~~e~~~~V~v~~~ 222 (365)
T d1jofa_ 145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGD--HPRWVAMHPTGNYLYALMEAGNRICEYVI 222 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTC--CEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCC--ceEEEEECCCCceEEEeccCCCEEEEEEe
Confidence 35789999999998887754 557888876554333222211 11111 234678999999875554 6789999998
Q ss_pred CCccceeEEe--C---------------CCcCCcceEEEecCCCccEEEEEc
Q 038702 109 AQRRSVATLQ--S---------------PYISAIPCRFHAHPHQVGTLAGAT 143 (154)
Q Consensus 109 ~~~~~~~~~~--~---------------~~~~~~~~~~~~~~~~~~~l~~~~ 143 (154)
...+...... . .........+.++| ++++|.++.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~lyvsn 273 (365)
T d1jofa_ 223 DPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-SGKYMFASS 273 (365)
T ss_dssp CTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-TSSEEEEEE
T ss_pred cCCCceEEEEeeeeccccccccccccccccccCCccceEECC-CCCEEEEEc
Confidence 7654322111 0 00111234678899 777776653
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.42 E-value=3.6e-05 Score=47.46 Aligned_cols=141 Identities=12% Similarity=-0.026 Sum_probs=85.6
Q ss_pred eecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeE
Q 038702 3 TSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISS 82 (154)
Q Consensus 3 ~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (154)
+...+++|..|+... + ...+......+.+++|+++|+++++...++.+..++....................
T Consensus 44 t~~~~~~I~~i~p~g-~-----~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 115 (302)
T d2p4oa1 44 TNHEVGEIVSITPDG-N-----QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFL-- 115 (302)
T ss_dssp EETTTTEEEEECTTC-C-----EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCE--
T ss_pred EeCCCCEEEEEeCCC-C-----EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCcccc--
Confidence 344455555554322 1 23344667789999999999999998888888888876543332221111122222
Q ss_pred EEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeC--------CCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 83 FRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQS--------PYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 83 ~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
-.+.+.++++++++.+.++.+..++...+........ .........+.+.. ..++++.+..+.|..+++
T Consensus 116 n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~--~~l~~~~~~~~~i~~~~~ 192 (302)
T d2p4oa1 116 NGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG--NFLYVSNTEKMLLLRIPV 192 (302)
T ss_dssp EEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET--TEEEEEETTTTEEEEEEB
T ss_pred ceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC--CceeeecCCCCeEEeccc
Confidence 2457889999999888888888888876643322221 11112223445543 456677778888887765
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.34 E-value=5.1e-05 Score=45.56 Aligned_cols=79 Identities=18% Similarity=0.127 Sum_probs=52.1
Q ss_pred cEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCC---eEEEEeccccccceeEeecCCCCceEeEEEE
Q 038702 9 TACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDD---TIGIWSGVNFENTAMIHHNNQTGRWISSFRA 85 (154)
Q Consensus 9 ~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (154)
.|.|.|....+ ...+..+...+.+.+|||||+.|+...... .+.+.+.............. .....
T Consensus 20 ~l~i~d~dG~~-----~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 88 (269)
T d2hqsa1 20 ELRVSDYDGYN-----QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR------HNGAP 88 (269)
T ss_dssp EEEEEETTSCS-----CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSS------CEEEE
T ss_pred EEEEEcCCCCC-----cEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeec------ccccc
Confidence 47777776444 555667788899999999999998765432 35556665555443333322 12345
Q ss_pred EEcCCCcEEEEEc
Q 038702 86 IWGWDDSCIFIGN 98 (154)
Q Consensus 86 ~~~~~~~~l~~~~ 98 (154)
.|+|++..++...
T Consensus 89 ~~spdg~~i~~~~ 101 (269)
T d2hqsa1 89 AFSPDGSKLAFAL 101 (269)
T ss_dssp EECTTSSEEEEEE
T ss_pred eecCCCCeeeEee
Confidence 7999999887655
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.33 E-value=4.3e-05 Score=46.05 Aligned_cols=114 Identities=7% Similarity=-0.050 Sum_probs=75.4
Q ss_pred cCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCc
Q 038702 32 KRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQR 111 (154)
Q Consensus 32 ~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~ 111 (154)
......+++.++++.+++-..+..+..++................ ...++++++++++++...++.|..++....
T Consensus 97 ~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-----p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~ 171 (260)
T d1rwia_ 97 LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLND-----PDGVAVDNSGNVYVTDTDNNRVVKLEAESN 171 (260)
T ss_dssp CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCS-----CCEEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred eeecccccccccceeEeeccccccccccccccceeeeeeecccCC-----cceeeecCCCCEeeeccccccccccccccc
Confidence 356789999999988887766777777776554332221111111 114567889998888888889999997754
Q ss_pred cceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 112 RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
... .+.. .....+..+++++ +++++++....+.|..++.
T Consensus 172 ~~~-~~~~-~~~~~p~gi~~d~-~g~l~vsd~~~~~i~~~~~ 210 (260)
T d1rwia_ 172 NQV-VLPF-TDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLA 210 (260)
T ss_dssp CEE-ECCC-SSCCSEEEEEECT-TCCEEEEETTTTEEEEECT
T ss_pred eee-eeec-cccCCCccceeee-eeeeeeeecCCCEEEEEeC
Confidence 332 2221 2223346788888 7788888888888887764
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.26 E-value=8.9e-05 Score=45.13 Aligned_cols=117 Identities=8% Similarity=-0.012 Sum_probs=78.5
Q ss_pred ccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCC
Q 038702 31 HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQ 110 (154)
Q Consensus 31 ~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 110 (154)
.......+++.++++.+++....+.+.+++.... ....+..... ......+++.+++..+++....+.|++||..
T Consensus 112 ~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~-~~~~~g~~~~---~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~- 186 (279)
T d1q7fa_ 112 ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-VLHKFGCSKH---LEFPNGVVVNDKQEIFISDNRAHCVKVFNYE- 186 (279)
T ss_dssp TCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EEEEEECTTT---CSSEEEEEECSSSEEEEEEGGGTEEEEEETT-
T ss_pred cccccceeccccCCcEEEEeeccceeeEeccCCc-eeeccccccc---ccccceeeeccceeEEeeeccccceeeeecC-
Confidence 3456778999999998888877888888876432 2222221111 1123356778899999888899999999864
Q ss_pred ccceeEEeCCCcCCcceEEEecCCCccEEEEEcC-CCeEEEeeC
Q 038702 111 RRSVATLQSPYISAIPCRFHAHPHQVGTLAGATG-GGQVYVWTS 153 (154)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~~wd~ 153 (154)
++.+.++........+..++++| +++++++-.. ++.|.+++.
T Consensus 187 G~~~~~~g~~g~~~~P~giavD~-~G~i~Vad~~~~~~v~~f~~ 229 (279)
T d1q7fa_ 187 GQYLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQ 229 (279)
T ss_dssp CCEEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECT
T ss_pred CceeeeecccccccCCccccccc-CCeEEEEECCCCcEEEEECC
Confidence 56666664333334456789999 6777777554 457888875
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.20 E-value=0.00012 Score=44.12 Aligned_cols=112 Identities=9% Similarity=0.019 Sum_probs=75.5
Q ss_pred CCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCcc
Q 038702 33 RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRR 112 (154)
Q Consensus 33 ~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~ 112 (154)
.....++++++++.+++...++.|..++............ . ......+++.+++.++++....+.|..++.....
T Consensus 140 ~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~--~---~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~ 214 (260)
T d1rwia_ 140 NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFT--D---ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT 214 (260)
T ss_dssp CSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCS--S---CCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC
T ss_pred CCcceeeecCCCCEeeeccccccccccccccceeeeeecc--c---cCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe
Confidence 3457899999999888888888999998776543322111 1 1123456788999988888888888888765432
Q ss_pred ceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 113 SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
...+. ......+..+++++ +++++++-..+++|+..+
T Consensus 215 -~~~~~-~~~~~~P~~i~~d~-~g~l~vad~~~~rI~~i~ 251 (260)
T d1rwia_ 215 -STVLP-FTGLNTPLAVAVDS-DRTVYVADRGNDRVVKLT 251 (260)
T ss_dssp -CEECC-CCSCCCEEEEEECT-TCCEEEEEGGGTEEEEEC
T ss_pred -EEEEc-cCCCCCeEEEEEeC-CCCEEEEECCCCEEEEEe
Confidence 22222 22223346889998 678888877788887665
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.93 E-value=0.00038 Score=41.58 Aligned_cols=97 Identities=10% Similarity=-0.035 Sum_probs=56.5
Q ss_pred ecccCCeEEEEEcCCCCEEEEeeCC-CeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccC---CeEE
Q 038702 29 LSHKRAVHSAYFSPSGSSLATTSFD-DTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMT---RTVE 104 (154)
Q Consensus 29 ~~~~~~v~~~~~~~~~~~l~~~~~d-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---~~i~ 104 (154)
..+........|+|+++.++..+.+ +...+|............... . ......|+|||+.|+..+.. ..|+
T Consensus 167 ~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~----~~~~p~~SPDG~~i~f~s~~~~~~~l~ 241 (269)
T d2hqsa1 167 TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSST-F----LDETPSLAPNGTMVIYSSSQGMGSVLN 241 (269)
T ss_dssp CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCS-S----SCEEEEECTTSSEEEEEEEETTEEEEE
T ss_pred ecccccccccccccccceeEEEeecCCceeeeEeecccccceEeecC-c----cccceEECCCCCEEEEEEcCCCCcEEE
Confidence 3456667788999999988876654 444444433322222111111 1 12245799999988765543 4688
Q ss_pred EecCCCccceeEEeCCCcCCcceEEEecC
Q 038702 105 VISPAQRRSVATLQSPYISAIPCRFHAHP 133 (154)
Q Consensus 105 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (154)
++++..+.. ..+.... . .....+|+|
T Consensus 242 ~~~~dg~~~-~~lt~~~-g-~~~~p~WSP 267 (269)
T d2hqsa1 242 LVSTDGRFK-ARLPATD-G-QVKFPAWSP 267 (269)
T ss_dssp EEETTSCCE-EECCCSS-S-EEEEEEECC
T ss_pred EEECCCCCE-EEEeCCC-C-cEEeEEeCC
Confidence 889876654 3343222 2 224678988
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.83 E-value=6.8e-05 Score=49.14 Aligned_cols=111 Identities=11% Similarity=-0.004 Sum_probs=68.2
Q ss_pred EEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEc---------cCCeEEEecC
Q 038702 38 AYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGN---------MTRTVEVISP 108 (154)
Q Consensus 38 ~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---------~d~~i~i~~~ 108 (154)
..|.+++.++. -..+|.+.+||+.+++....+.......... ....++||+++++... ..+.+.++|+
T Consensus 22 ~~W~~~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~ 98 (465)
T d1xfda1 22 AKWISDTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRA--IRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKI 98 (465)
T ss_dssp CCBSSSSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTC--SEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEES
T ss_pred CEEeCCCcEEE-EeCCCcEEEEECCCCCEEEEEcCcccccccc--ceeEECCCCCeEEEEEcccceeEeeccccEEEEEc
Confidence 36888876554 4567889999999887655443322111112 2446899999887763 3567889999
Q ss_pred CCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 109 AQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.+++..................|+| +++.++-.. ++.|.+.+.
T Consensus 99 ~~~~~~~l~~~~~~~~~l~~~~wSP-DG~~iafv~-~~nl~~~~~ 141 (465)
T d1xfda1 99 PHGDPQSLDPPEVSNAKLQYAGWGP-KGQQLIFIF-ENNIYYCAH 141 (465)
T ss_dssp SSCCCEECCCTTCCSCCCSBCCBCS-STTCEEEEE-TTEEEEESS
T ss_pred cCCceeeccCccCCccccceeeecc-CCceEEEEe-cceEEEEec
Confidence 8877543222111122223468999 777777654 456666553
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.75 E-value=0.00053 Score=41.07 Aligned_cols=96 Identities=9% Similarity=-0.061 Sum_probs=57.3
Q ss_pred EEcCC--CCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEcc-C-----CeEEEecCCC
Q 038702 39 YFSPS--GSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNM-T-----RTVEVISPAQ 110 (154)
Q Consensus 39 ~~~~~--~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d-----~~i~i~~~~~ 110 (154)
..+|+ |+.++..+ ++.|.+.|+.+++...+..... .....+|+|||+.|+.... + ..|.+++..+
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~Lt~~~~------~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~ 77 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTRKIVSNLG------VINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN 77 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSSS------EEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTT
T ss_pred ccCCCCCCCEEEEEe-CCcEEEEECCCCCEEEEecCCC------cccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecC
Confidence 35787 88887664 4568888988776554433222 2346789999998886542 2 2467777776
Q ss_pred ccceeEEeCCC----cCCcceEEEecCCCccEEEEE
Q 038702 111 RRSVATLQSPY----ISAIPCRFHAHPHQVGTLAGA 142 (154)
Q Consensus 111 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~ 142 (154)
++......... .........|+| +++.|+..
T Consensus 78 g~~~~lt~~~~~~~~~~~~~~~~~~sp-dg~~l~~~ 112 (281)
T d1k32a2 78 GEIKRITYFSGKSTGRRMFTDVAGFDP-DGNLIIST 112 (281)
T ss_dssp TEEEECCCCCEEEETTEECSEEEEECT-TCCEEEEE
T ss_pred CceEEeeecCCCccCccccccccccCC-CCCEEEEE
Confidence 65433211110 011124567888 77776654
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.68 E-value=0.0016 Score=40.23 Aligned_cols=117 Identities=11% Similarity=-0.006 Sum_probs=66.3
Q ss_pred cccCCeEEEEEcCCCCEEEEeeC----CCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEcc------
Q 038702 30 SHKRAVHSAYFSPSGSSLATTSF----DDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNM------ 99 (154)
Q Consensus 30 ~~~~~v~~~~~~~~~~~l~~~~~----d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------ 99 (154)
........++++++|+++++... .+.+...+............... .. ..-.+++.++|++.++...
T Consensus 79 ~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~--~~nd~~~d~~G~l~vtd~~~~~~~~ 155 (319)
T d2dg1a1 79 SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLST-AY--CIDDMVFDSKGGFYFTDFRGYSTNP 155 (319)
T ss_dssp CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSS-CC--CEEEEEECTTSCEEEEECCCBTTBC
T ss_pred CCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCc-cc--CCcceeEEeccceeecccccccccC
Confidence 44556789999999988877543 23344445544443333322111 11 2224678999987776432
Q ss_pred CCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCcc-EEEEEcCCCeEEEeeC
Q 038702 100 TRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVG-TLAGATGGGQVYVWTS 153 (154)
Q Consensus 100 d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~~wd~ 153 (154)
.+.+..++.... .+..+.. ....+..++|+| +++ ++++-+..+.|..||+
T Consensus 156 ~g~v~~~~~dg~-~~~~~~~--~~~~pnGia~s~-dg~~lyvad~~~~~I~~~d~ 206 (319)
T d2dg1a1 156 LGGVYYVSPDFR-TVTPIIQ--NISVANGIALST-DEKVLWVTETTANRLHRIAL 206 (319)
T ss_dssp CEEEEEECTTSC-CEEEEEE--EESSEEEEEECT-TSSEEEEEEGGGTEEEEEEE
T ss_pred cceeEEEecccc-eeEEEee--ccceeeeeeecc-ccceEEEecccCCceEEEEE
Confidence 123444544332 2232221 122346789999 555 5577778889998875
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.64 E-value=0.00033 Score=42.03 Aligned_cols=86 Identities=22% Similarity=0.232 Sum_probs=52.2
Q ss_pred CCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeC-C-----CeEEEEeccccccceeEeecC-CCCce
Q 038702 7 DGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSF-D-----DTIGIWSGVNFENTAMIHHNN-QTGRW 79 (154)
Q Consensus 7 d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----~~v~~~~~~~~~~~~~~~~~~-~~~~~ 79 (154)
++.|.+.|+..++ ..++..+.+.+...+|||||+.|+.... + ..+.+++..+++...+..... .....
T Consensus 20 ~~dl~~~d~~~g~-----~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~ 94 (281)
T d1k32a2 20 CDDLWEHDLKSGS-----TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRR 94 (281)
T ss_dssp TTEEEEEETTTCC-----EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTE
T ss_pred CCcEEEEECCCCC-----EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCcc
Confidence 4567777887665 4556677788899999999999886532 2 136666666655443321110 00111
Q ss_pred EeEEEEEEcCCCcEEEEE
Q 038702 80 ISSFRAIWGWDDSCIFIG 97 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~ 97 (154)
.......|+|+++.++..
T Consensus 95 ~~~~~~~~spdg~~l~~~ 112 (281)
T d1k32a2 95 MFTDVAGFDPDGNLIIST 112 (281)
T ss_dssp ECSEEEEECTTCCEEEEE
T ss_pred ccccccccCCCCCEEEEE
Confidence 122245789999887764
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.62 E-value=0.002 Score=39.46 Aligned_cols=121 Identities=10% Similarity=-0.129 Sum_probs=74.2
Q ss_pred eecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccC----CeE
Q 038702 28 VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMT----RTV 103 (154)
Q Consensus 28 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----~~i 103 (154)
.......+.++.+.+++.++++ +.+ -+..+|..+++......... .......-.+...|+|++.++.... +.-
T Consensus 54 ~~~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~-~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g 130 (295)
T d2ghsa1 54 VHALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELES-DLPGNRSNDGRMHPSGALWIGTMGRKAETGAG 130 (295)
T ss_dssp EEECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSST-TCTTEEEEEEEECTTSCEEEEEEETTCCTTCE
T ss_pred EEECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeec-CCCcccceeeEECCCCCEEEEeccccccccce
Confidence 3345667889999998877765 455 48889988876554433221 1112233456789999877765422 234
Q ss_pred EEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 104 EVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 104 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.+|.+..++....... ......+++++....++++-+..+.|..++++
T Consensus 131 ~l~~~~~g~~~~~~~~---~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d 178 (295)
T d2ghsa1 131 SIYHVAKGKVTKLFAD---ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLD 178 (295)
T ss_dssp EEEEEETTEEEEEEEE---ESSEEEEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred eEeeecCCcEEEEeec---cCCcceeeecCCCceEEEeecccceeeEeeec
Confidence 5565555554333321 22346788998444466777788889888763
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.60 E-value=0.0023 Score=39.56 Aligned_cols=108 Identities=9% Similarity=-0.092 Sum_probs=67.6
Q ss_pred cCCeEEEEEcCCCCEE-EEeeCCCeEEEEeccccccce-eE----eecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEE
Q 038702 32 KRAVHSAYFSPSGSSL-ATTSFDDTIGIWSGVNFENTA-MI----HHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEV 105 (154)
Q Consensus 32 ~~~v~~~~~~~~~~~l-~~~~~d~~v~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i 105 (154)
-.....++|+|+++.| ++-+..+.|..+++....... .. ....... ...-.+++..+|++.++....+.|.+
T Consensus 176 ~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~--~~PdGl~vD~~G~l~Va~~~~g~V~~ 253 (319)
T d2dg1a1 176 ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH--EGPDSCCIDSDDNLYVAMYGQGRVLV 253 (319)
T ss_dssp ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS--SEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred cceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCc--cceeeeeEcCCCCEEEEEcCCCEEEE
Confidence 3455779999999866 444668899999886543221 11 1111100 01224678899998888888899999
Q ss_pred ecCCCccceeEEeCCCc----CCcceEEEecCCCccEEEEE
Q 038702 106 ISPAQRRSVATLQSPYI----SAIPCRFHAHPHQVGTLAGA 142 (154)
Q Consensus 106 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~ 142 (154)
++. .++.+..+..+.. .....++++.|....++++.
T Consensus 254 ~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~ 293 (319)
T d2dg1a1 254 FNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS 293 (319)
T ss_dssp ECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred ECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence 995 6888887764422 12235678888443444443
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.53 E-value=0.0028 Score=38.76 Aligned_cols=138 Identities=13% Similarity=0.038 Sum_probs=77.3
Q ss_pred ecCCCcEEEEEccCCCCCCCCCceeec-----ccCCeEEEEEcCCCCEEEEeeC----CCeEEEEeccccccceeEeecC
Q 038702 4 SSTDGTACIWDLRSMATDKPEPTKVLS-----HKRAVHSAYFSPSGSSLATTSF----DDTIGIWSGVNFENTAMIHHNN 74 (154)
Q Consensus 4 ~~~d~~v~vw~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~----d~~v~~~~~~~~~~~~~~~~~~ 74 (154)
++.+ -+.++|..+++. ..+.. ....+..+.+.|+|++.++... .+.-.+|.+..++.........
T Consensus 75 a~~~-gl~~~d~~tg~~-----~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~ 148 (295)
T d2ghsa1 75 ASDD-GLFLRDTATGVL-----TLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADIS 148 (295)
T ss_dssp EETT-EEEEEETTTCCE-----EEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEES
T ss_pred EEeC-ccEEeeccccee-----eEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccC
Confidence 4444 377788776542 22211 1235788999999987776543 2234555555544333222111
Q ss_pred CCCceEeEEEEEEcCCCcEE-EEEccCCeEEEecCCC------ccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCe
Q 038702 75 QTGRWISSFRAIWGWDDSCI-FIGNMTRTVEVISPAQ------RRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQ 147 (154)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l-~~~~~d~~i~i~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 147 (154)
..-.++|+++++.+ ++-+..+.|..|++.. ++.............+-.++.+. ++++.++.-..+.
T Consensus 149 ------~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~-~GnlWva~~~~g~ 221 (295)
T d2ghsa1 149 ------IPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGA 221 (295)
T ss_dssp ------SEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTE
T ss_pred ------CcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcC-CCCEEeeeeCCCc
Confidence 11246789998755 5556677888887642 11111122122223335677777 7777777767788
Q ss_pred EEEeeCC
Q 038702 148 VYVWTSD 154 (154)
Q Consensus 148 i~~wd~~ 154 (154)
|..||.+
T Consensus 222 V~~~dp~ 228 (295)
T d2ghsa1 222 VDRYDTD 228 (295)
T ss_dssp EEEECTT
T ss_pred eEEecCC
Confidence 8888863
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.34 E-value=0.004 Score=38.40 Aligned_cols=70 Identities=7% Similarity=-0.056 Sum_probs=51.0
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCc-EEEEEccCCeEEEecCC
Q 038702 35 VHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDS-CIFIGNMTRTVEVISPA 109 (154)
Q Consensus 35 v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~i~~~~ 109 (154)
.-.+++.++|++.++....+.|.++|.+.......+..... ....++|.|+++ ++++.+.++.|.-+++.
T Consensus 228 pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~-----~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 228 ADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFE-----KPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSS-----CEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred ceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCC-----CEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence 45799999999888888889999999887765544432221 223578999986 55666778888877765
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.04 E-value=0.013 Score=36.61 Aligned_cols=113 Identities=7% Similarity=-0.040 Sum_probs=64.5
Q ss_pred EEEEcCCCCEEEEeeCCC-----------eEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccC-CeEE
Q 038702 37 SAYFSPSGSSLATTSFDD-----------TIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMT-RTVE 104 (154)
Q Consensus 37 ~~~~~~~~~~l~~~~~d~-----------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-~~i~ 104 (154)
......+|+.++.|+.+. .+.+||..+..-............ .+...++.+++.+++.|+.+ ..+.
T Consensus 24 ~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~--~~~~~~~~~~g~i~v~Gg~~~~~~~ 101 (387)
T d1k3ia3 24 AAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDM--FCPGISMDGNGQIVVTGGNDAKKTS 101 (387)
T ss_dssp EEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCC--SSCEEEECTTSCEEEECSSSTTCEE
T ss_pred EEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCccc--ceeEEEEecCCcEEEeecCCCccee
Confidence 334455788888777421 367899987654332211111111 11234678899999988765 5799
Q ss_pred EecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCC------CeEEEeeC
Q 038702 105 VISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGG------GQVYVWTS 153 (154)
Q Consensus 105 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------~~i~~wd~ 153 (154)
+||..+..-...-.... .......+..+ ++.+++.|+.+ ..+.+||+
T Consensus 102 ~yd~~~~~w~~~~~~~~-~r~~~~~~~~~-dG~v~v~GG~~~~~~~~~~v~~yd~ 154 (387)
T d1k3ia3 102 LYDSSSDSWIPGPDMQV-ARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSP 154 (387)
T ss_dssp EEEGGGTEEEECCCCSS-CCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEET
T ss_pred EecCccCcccccccccc-cccccceeeec-CCceeeeccccccccccceeeeecC
Confidence 99988665432111111 11123455555 67888887642 35777775
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=95.97 E-value=0.11 Score=34.56 Aligned_cols=31 Identities=10% Similarity=0.236 Sum_probs=26.8
Q ss_pred CCcEEEEEccCCeEEEecCCCccceeEEeCC
Q 038702 90 DDSCIFIGNMTRTVEVISPAQRRSVATLQSP 120 (154)
Q Consensus 90 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 120 (154)
.+.++++|+.||.++.+|.++|+.+-+++..
T Consensus 468 agglVF~G~~dg~l~A~Da~tGe~LW~~~l~ 498 (560)
T d1kv9a2 468 AGNLVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (560)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CCCEEEEECCCCcEEEEECCCCcEeEEEECC
Confidence 4667888999999999999999999888744
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=95.95 E-value=0.12 Score=34.59 Aligned_cols=31 Identities=10% Similarity=0.131 Sum_probs=27.0
Q ss_pred CCcEEEEEccCCeEEEecCCCccceeEEeCC
Q 038702 90 DDSCIFIGNMTRTVEVISPAQRRSVATLQSP 120 (154)
Q Consensus 90 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 120 (154)
.+.++++|+.|+.++.+|.++|+.+-++...
T Consensus 487 agglVF~G~~dg~l~A~Da~TGe~LW~~~~~ 517 (573)
T d1kb0a2 487 AGNVVFQGTADGRLVAYHAATGEKLWEAPTG 517 (573)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred cCCEEEEECCCCeEEEEECCCCcEeEEEECC
Confidence 5678888999999999999999999887743
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.86 E-value=0.13 Score=34.42 Aligned_cols=52 Identities=8% Similarity=-0.017 Sum_probs=34.7
Q ss_pred CCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEE
Q 038702 90 DDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGA 142 (154)
Q Consensus 90 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 142 (154)
.+.++++|+.||.++.+|.++|+.+-+++......- .-+.+..+..+|++..
T Consensus 496 agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~-~P~ty~~~G~qYv~i~ 547 (582)
T d1flga_ 496 AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVS-PPITWEQDGEQYLGVT 547 (582)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS-CCEEEEETTEEEEEEE
T ss_pred cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccc-cCEEEEECCEEEEEEE
Confidence 567888899999999999999999988874332221 2234433233565543
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=95.38 E-value=0.2 Score=33.40 Aligned_cols=31 Identities=3% Similarity=0.246 Sum_probs=26.4
Q ss_pred CCcEEEEEccCCeEEEecCCCccceeEEeCC
Q 038702 90 DDSCIFIGNMTRTVEVISPAQRRSVATLQSP 120 (154)
Q Consensus 90 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 120 (154)
.+.++++++.|+.++.+|.++|+.+-++...
T Consensus 474 agglVf~G~~dg~l~A~Da~tGe~lW~~~l~ 504 (571)
T d2ad6a1 474 KGGLVWYATLDGYLKALDNKDGKELWNFKMP 504 (571)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred cCCEEEEECCCCeEEEEECCCCcEEEEEECC
Confidence 4567788999999999999999999887743
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=95.38 E-value=0.17 Score=32.60 Aligned_cols=68 Identities=15% Similarity=0.170 Sum_probs=45.3
Q ss_pred EEEcCCCcEEEEEc-cCCeEEEecCCCccce--------eEEeC-CCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 85 AIWGWDDSCIFIGN-MTRTVEVISPAQRRSV--------ATLQS-PYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 85 ~~~~~~~~~l~~~~-~d~~i~i~~~~~~~~~--------~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+..+|||+++++++ .+.++.++|++.-..+ ..+.+ ...+.-+..-+|+. +++-..+---|..|.-|++
T Consensus 280 V~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~-~g~aytslfids~v~kw~~ 357 (459)
T d1fwxa2 280 CNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNI 357 (459)
T ss_dssp EEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECT-TSEEEEEETTTTEEEEEEH
T ss_pred eEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCC-CceEEEEeeccceEEEEec
Confidence 56799999887665 6789999998632111 11111 12222345678888 7777777778999999986
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=95.32 E-value=0.15 Score=31.62 Aligned_cols=97 Identities=16% Similarity=0.134 Sum_probs=57.4
Q ss_pred EEEEEccCCCCCCCCCcee-ecccCCeEEEEEcCCCCEEEEeeCC-CeEEEEeccccccceeEeecCCCCceEeEEEEEE
Q 038702 10 ACIWDLRSMATDKPEPTKV-LSHKRAVHSAYFSPSGSSLATTSFD-DTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIW 87 (154)
Q Consensus 10 v~vw~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (154)
+.+||..++.-.. .... ..+........+.+++..++.|+.+ ..+.+||..+..-...-.. ...+... .++.
T Consensus 54 ~~~yd~~t~~w~~--~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~--~~~r~~~--~~~~ 127 (387)
T d1k3ia3 54 TSSWDPSTGIVSD--RTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDM--QVARGYQ--SSAT 127 (387)
T ss_dssp EEEECTTTCCBCC--CEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCC--SSCCSSC--EEEE
T ss_pred EEEEECCCCcEee--cCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccc--ccccccc--ceee
Confidence 5578777654211 1111 1333334466788999999988765 5799999887544322111 1111111 3455
Q ss_pred cCCCcEEEEEccC------CeEEEecCCCcc
Q 038702 88 GWDDSCIFIGNMT------RTVEVISPAQRR 112 (154)
Q Consensus 88 ~~~~~~l~~~~~d------~~i~i~~~~~~~ 112 (154)
.+++++++.++.+ ..+.+||..+.+
T Consensus 128 ~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~ 158 (387)
T d1k3ia3 128 MSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 158 (387)
T ss_dssp CTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred ecCCceeeeccccccccccceeeeecCCCCc
Confidence 7789998888743 358899987654
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.20 E-value=0.16 Score=31.15 Aligned_cols=103 Identities=10% Similarity=0.102 Sum_probs=58.3
Q ss_pred CcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEecccccccee-Ee-ecCCCCceEeEEEE
Q 038702 8 GTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAM-IH-HNNQTGRWISSFRA 85 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~ 85 (154)
.++.++|+++.+ ..+......+|.-..|-.+.. |+-.+ +..|.-|+++....+.. +. +.... ..+.+..
T Consensus 83 ~~LQiFnletK~-----klks~~~~e~VvfWkWis~~~-L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~--~~QIInY 153 (327)
T d1utca2 83 KTLQIFNIEMKS-----KMKAHTMTDDVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRHSSLA--GCQIINY 153 (327)
T ss_dssp TEEEEEETTTTE-----EEEEEECSSCCCEEEESSSSE-EEEEC-SSEEEEEESSSSCCCEEEEECCGGGT--TCEEEEE
T ss_pred CeEEEEehhHhh-----hhceEEcCCCcEEEEecCCCE-EEEEc-CCceEEEcccCCCCchhhhhhccccc--CceEEEE
Confidence 357777777654 344444556777788865443 33332 35688899865443332 22 22222 2344455
Q ss_pred EEcCCCcEEEEEc-------cCCeEEEecCCCccceeEEeCC
Q 038702 86 IWGWDDSCIFIGN-------MTRTVEVISPAQRRSVATLQSP 120 (154)
Q Consensus 86 ~~~~~~~~l~~~~-------~d~~i~i~~~~~~~~~~~~~~~ 120 (154)
..+++.++++..+ -.|.+.+|..+... -+.+.+|
T Consensus 154 ~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~ieGh 194 (327)
T d1utca2 154 RTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGH 194 (327)
T ss_dssp EECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCS
T ss_pred EECCCCCEEEEEeEecCCCceeEEEEEEEeccCc-Cccccce
Confidence 6788888765543 23678899887543 2345444
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.84 E-value=0.25 Score=31.53 Aligned_cols=100 Identities=13% Similarity=-0.003 Sum_probs=56.3
Q ss_pred CeEEEEEcCCCCEEEEe-eC----CCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccC--------
Q 038702 34 AVHSAYFSPSGSSLATT-SF----DDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMT-------- 100 (154)
Q Consensus 34 ~v~~~~~~~~~~~l~~~-~~----d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-------- 100 (154)
.+...+++|++++++.+ +. .-.+++.|+.+++........... -.++|.++++.|+....+
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~------~~~~W~~D~~~~~Y~~~~~~~~~~~~ 199 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKF------SCMAWTHDGKGMFYNAYPQQDGKSDG 199 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECS------CCEEECTTSSEEEEEECCCCSSCCSS
T ss_pred eecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccc------cceEEcCCCCEEEEEEeccccCcccc
Confidence 34567889999987753 22 346999999998754322111110 135799999877654322
Q ss_pred --------CeEEEecCCCccce--eEEeCCCcCCcceEEEecCCCccEEE
Q 038702 101 --------RTVEVISPAQRRSV--ATLQSPYISAIPCRFHAHPHQVGTLA 140 (154)
Q Consensus 101 --------~~i~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~ 140 (154)
..|..+.+.+...- ..+...........+..++ ++++++
T Consensus 200 ~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~-d~~~l~ 248 (430)
T d1qfma1 200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVL 248 (430)
T ss_dssp SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEE
T ss_pred cccccCCcceEEEEECCCCccccccccccccCCceEEeeeccC-Ccceee
Confidence 25777777665332 2333222222223445565 556654
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=94.78 E-value=0.29 Score=32.83 Aligned_cols=31 Identities=10% Similarity=0.224 Sum_probs=26.9
Q ss_pred CCcEEEEEccCCeEEEecCCCccceeEEeCC
Q 038702 90 DDSCIFIGNMTRTVEVISPAQRRSVATLQSP 120 (154)
Q Consensus 90 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 120 (154)
.+.+++.|+.||.++.+|.++|+.+-++...
T Consensus 483 agglVF~G~~Dg~l~A~Da~TGe~LW~~~~~ 513 (596)
T d1w6sa_ 483 AGDLVFYGTLDGYLKARDSDTGDLLWKFKIP 513 (596)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred cCCEEEEECCCCeEEEEECCCCcEeeEEECC
Confidence 4677888999999999999999999888743
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=92.68 E-value=0.75 Score=29.69 Aligned_cols=84 Identities=7% Similarity=0.076 Sum_probs=48.4
Q ss_pred ecCCCcEEEEEccCCCCCCCCCceee--cccCCeEEEEEcC--CCCEEEEeeCCC------------------eEEEEec
Q 038702 4 SSTDGTACIWDLRSMATDKPEPTKVL--SHKRAVHSAYFSP--SGSSLATTSFDD------------------TIGIWSG 61 (154)
Q Consensus 4 ~~~d~~v~vw~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~--~~~~l~~~~~d~------------------~v~~~~~ 61 (154)
-..++.|-+.|++..+. .++. .....+..++..+ +..+++..+.+. .+...|.
T Consensus 106 Dkan~RVAvIdl~~fkt-----~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~ 180 (459)
T d1fwxa2 106 DKANTRVARVRCDVMKC-----DAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDA 180 (459)
T ss_dssp ETTTTEEEEEETTTTEE-----EEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEET
T ss_pred cCCCceEEEEECcceee-----eEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEec
Confidence 34566777788876652 2222 3455667777655 445666655532 3556777
Q ss_pred cccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEc
Q 038702 62 VNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGN 98 (154)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 98 (154)
.+.+.......... .. .+.++++|+++++.+
T Consensus 181 ~tm~V~~QV~V~g~----ld--~~~~s~dGK~af~Ts 211 (459)
T d1fwxa2 181 DKWEVAWQVLVSGN----LD--NCDADYEGKWAFSTS 211 (459)
T ss_dssp TTTEEEEEEEESSC----CC--CEEECSSSSEEEEEE
T ss_pred CCceEEEEeeeCCC----hh--ccccCCCCCEEEEEe
Confidence 76655443332221 11 356889999888765
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.76 E-value=0.71 Score=27.34 Aligned_cols=114 Identities=7% Similarity=-0.069 Sum_probs=62.6
Q ss_pred CCeEEEEEcCCCCEEEEe-eCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEc--cCCeEEEecCC
Q 038702 33 RAVHSAYFSPSGSSLATT-SFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGN--MTRTVEVISPA 109 (154)
Q Consensus 33 ~~v~~~~~~~~~~~l~~~-~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~d~~i~i~~~~ 109 (154)
..+..+++.+.+..|+.+ ...++|.+.++.............. ....++..|...++.... ..+.|.-.++.
T Consensus 77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~-----~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~d 151 (266)
T d1ijqa1 77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS-----KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 151 (266)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTC-----CEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred CCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCC-----CcceEEEEcccCeEEEeccCCCcceeEeccC
Confidence 456788998755555544 4567899999876654443332211 123456677555444433 33345444443
Q ss_pred CccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 110 QRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
. .....+... ....+..+++++..+.+..+-...+.|...|+
T Consensus 152 G-s~~~~l~~~-~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~ 193 (266)
T d1ijqa1 152 G-VDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDV 193 (266)
T ss_dssp S-CCEEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred C-Cceeccccc-ccceeeEEEeeccccEEEEecCCcCEEEEEEC
Confidence 3 223333322 22234677888755555555566777777665
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.53 E-value=0.75 Score=27.20 Aligned_cols=116 Identities=7% Similarity=-0.039 Sum_probs=63.7
Q ss_pred cCCeEEEEEcCCCCEEE-EeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccC-CeEEEe--c
Q 038702 32 KRAVHSAYFSPSGSSLA-TTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMT-RTVEVI--S 107 (154)
Q Consensus 32 ~~~v~~~~~~~~~~~l~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-~~i~i~--~ 107 (154)
...+..+++..-+..|+ +-...+.|.+.++.......+...... ....++..|...++...... +..+|+ +
T Consensus 78 ~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~-----~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~ 152 (263)
T d1npea_ 78 LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLV-----NPRGIVTDPVRGNLYWTDWNRDNPKIETSH 152 (263)
T ss_dssp CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS-----SEEEEEEETTTTEEEEEECCSSSCEEEEEE
T ss_pred cccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEeccccc-----CCcEEEEecccCcEEEeecCCCCcEEEEec
Confidence 35678999987666555 445577899999876654443322111 12345677766655544322 233344 3
Q ss_pred CCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 108 PAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
+. +.....+... .-..+..+++++..+.+..+-...+.|...|++
T Consensus 153 ~d-G~~~~~i~~~-~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~ 197 (263)
T d1npea_ 153 MD-GTNRRILAQD-NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPA 197 (263)
T ss_dssp TT-SCCCEEEECT-TCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CC-CCCceeeeee-cccccceEEEeecCcEEEEEeCCCCEEEEEECC
Confidence 33 2222333222 222336788887454455655667788777653
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.57 E-value=1.1 Score=27.45 Aligned_cols=133 Identities=7% Similarity=0.034 Sum_probs=75.1
Q ss_pred CcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCC---CEEEEee---CCCeEEEEecccccc---ce---eE---ee
Q 038702 8 GTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSG---SSLATTS---FDDTIGIWSGVNFEN---TA---MI---HH 72 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~---~d~~v~~~~~~~~~~---~~---~~---~~ 72 (154)
|.+.+|..+.+. ...+.+|.+.-..+.+.-+. +.|+.+. ..+++++.++..... .. .. ..
T Consensus 176 G~mQLYS~er~~-----sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fp 250 (327)
T d1utca2 176 GAMQLYSVDRKV-----SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFP 250 (327)
T ss_dssp EEEEEEETTTTE-----EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCC
T ss_pred EEEEEEEeccCc-----CccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECC
Confidence 567778776543 34445777655555543221 2333332 246888888876321 11 01 11
Q ss_pred cCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEE
Q 038702 73 NNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYV 150 (154)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~ 150 (154)
...... -.+.+..++.-..+..-++-|.+++||++++.++..-+-....+. . -+.+. ...-++.-..+|.|..
T Consensus 251 pea~~D--FPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF-~-~a~~~-~~~Gi~~VNr~GqVl~ 323 (327)
T d1utca2 251 PEAQND--FPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF-V-TAPHE-ATAGIIGVNRKGQVLS 323 (327)
T ss_dssp TTCTTC--CEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE-E-EEEET-TTTEEEEEETTSEEEE
T ss_pred ccccCC--cEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceE-E-eccCC-CCceEEEECCCCeEEE
Confidence 111111 123456677777888888999999999999999887764333332 2 23333 2334555557777654
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=90.50 E-value=1.2 Score=27.56 Aligned_cols=29 Identities=10% Similarity=0.110 Sum_probs=21.3
Q ss_pred EEEEcCCCcEEEE-EccCCeEEEecCCCcc
Q 038702 84 RAIWGWDDSCIFI-GNMTRTVEVISPAQRR 112 (154)
Q Consensus 84 ~~~~~~~~~~l~~-~~~d~~i~i~~~~~~~ 112 (154)
.++++|++++|+. .+..+.|+.|++....
T Consensus 210 GI~~s~d~~~lyVa~t~~~~i~~y~~~~~~ 239 (340)
T d1v04a_ 210 GINISPDGKYVYIAELLAHKIHVYEKHANW 239 (340)
T ss_dssp EEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred eeEECCCCCEEEEEeCCCCeEEEEEeCCCc
Confidence 4678999876654 4577889999887543
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.95 E-value=1.3 Score=26.07 Aligned_cols=129 Identities=15% Similarity=0.030 Sum_probs=71.3
Q ss_pred CCcEEEEEccCCCCCCCCCce-eecccCCeEEEEEcCCCCEEEEe-eCCCeEEEEeccccccceeEeecCCCCceEeEEE
Q 038702 7 DGTACIWDLRSMATDKPEPTK-VLSHKRAVHSAYFSPSGSSLATT-SFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFR 84 (154)
Q Consensus 7 d~~v~vw~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~-~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
.+.|+-.+++........... ...+...+..++|.+..+.++-+ ..++.|...++.......+...... ....
T Consensus 9 ~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~-----~p~~ 83 (263)
T d1npea_ 9 TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLG-----SPEG 83 (263)
T ss_dssp EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCC-----CEEE
T ss_pred CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccc-----cccE
Confidence 346666666544321111111 22445567889999877766655 4567888888876655544432111 1234
Q ss_pred EEEcCCCcEE-EEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEE
Q 038702 85 AIWGWDDSCI-FIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGA 142 (154)
Q Consensus 85 ~~~~~~~~~l-~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 142 (154)
+++..-+..| .+-...+.|.+.++..... ..+.... ...+..++.+|..+.++.+-
T Consensus 84 iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~-~~l~~~~-l~~p~~l~vdp~~g~ly~t~ 140 (263)
T d1npea_ 84 IALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVLFDTG-LVNPRGIVTDPVRGNLYWTD 140 (263)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSS-CSSEEEEEEETTTTEEEEEE
T ss_pred EEEeccCCeEEEeccCCCEEEEEecCCceE-EEEeccc-ccCCcEEEEecccCcEEEee
Confidence 5566544444 4555677899888875443 2332222 22346788888555555443
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=87.71 E-value=2.2 Score=27.03 Aligned_cols=87 Identities=9% Similarity=0.061 Sum_probs=46.9
Q ss_pred ecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCC----------------CeEEEEeccccccc
Q 038702 4 SSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFD----------------DTIGIWSGVNFENT 67 (154)
Q Consensus 4 ~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------------~~v~~~~~~~~~~~ 67 (154)
|++-..+++.|+.+++. ....... .....+.|.++++.|+....+ ..+..+.+.+....
T Consensus 147 G~e~~~l~v~Dl~tg~~----~~~~i~~-~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~ 221 (430)
T d1qfma1 147 GSDWVTIKFMKVDGAKE----LPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSE 221 (430)
T ss_dssp TCSCEEEEEEETTTTEE----EEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGG
T ss_pred cCchheeEEeccCccee----ccccccc-ccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCccc
Confidence 34445688888887653 1111111 122568899999977654332 25777777765443
Q ss_pred eeE-eecCCCCceEeEEEEEEcCCCcEEEEE
Q 038702 68 AMI-HHNNQTGRWISSFRAIWGWDDSCIFIG 97 (154)
Q Consensus 68 ~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~ 97 (154)
... ......... ...+..+.++++++..
T Consensus 222 d~~v~~e~d~~~~--~~~~~~s~d~~~l~i~ 250 (430)
T d1qfma1 222 DILCAEFPDEPKW--MGGAELSDDGRYVLLS 250 (430)
T ss_dssp CEEEECCTTCTTC--EEEEEECTTSCEEEEE
T ss_pred cccccccccCCce--EEeeeccCCcceeeEE
Confidence 222 221111112 2244568888887643
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=85.40 E-value=2.3 Score=28.26 Aligned_cols=60 Identities=12% Similarity=0.142 Sum_probs=37.2
Q ss_pred CcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEee
Q 038702 8 GTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHH 72 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~ 72 (154)
|.+.-||+.+++. .-...+..+...=..+-.+.++++++.|+.++.+|.++++.+-.+..
T Consensus 457 G~l~AiD~~tGk~-----~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~ 516 (573)
T d1kb0a2 457 GRLLAWDPVAQKA-----AWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT 516 (573)
T ss_dssp EEEEEEETTTTEE-----EEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ccEEEeCCCCCce-----EeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEEC
Confidence 3566677766553 11112222222112233677888899999999999999998866653
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=85.13 E-value=3.8 Score=27.24 Aligned_cols=60 Identities=10% Similarity=0.010 Sum_probs=37.8
Q ss_pred CcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEee
Q 038702 8 GTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHH 72 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~ 72 (154)
|.+.-+|+.+++. .-+. ....++..-..+..+.++++|+.||.++-+|.++++.+-.+..
T Consensus 466 G~l~AiD~~TG~i----~W~~-~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~ 525 (582)
T d1flga_ 466 GSLRAMDPVSGKV----VWEH-KEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp EEEEEECTTTCCE----EEEE-EESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEcCCCCcE----Eeec-CCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEEC
Confidence 5566677766653 1111 2222222212334677888899999999999999998866653
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=84.54 E-value=3.5 Score=26.42 Aligned_cols=60 Identities=8% Similarity=-0.048 Sum_probs=38.1
Q ss_pred ccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCC---CCceEeEEEEEEcCC
Q 038702 31 HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQ---TGRWISSFRAIWGWD 90 (154)
Q Consensus 31 ~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 90 (154)
.-...++|+|.|++++|++--..|.|++++..+.....+...... ....--.+.++++|+
T Consensus 25 ~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 25 NLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 345678999999999888875579999998777655433321110 000112346788885
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=83.93 E-value=2.9 Score=27.92 Aligned_cols=60 Identities=8% Similarity=-0.036 Sum_probs=37.7
Q ss_pred CcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEee
Q 038702 8 GTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHH 72 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~ 72 (154)
|.+.-||+.+++. .-...+..+..+-.++-.+.+++.|+.||.++-+|.++++.+-.+..
T Consensus 453 G~l~A~D~~TG~~-----~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~ 512 (596)
T d1w6sa_ 453 GQIKAYNAITGDY-----KWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKI 512 (596)
T ss_dssp EEEEEECTTTCCE-----EEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ceEEEEeCCCCce-----ecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEEC
Confidence 4566777766653 11112222222222233577888899999999999999998866543
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.72 E-value=2.8 Score=24.64 Aligned_cols=137 Identities=10% Similarity=-0.004 Sum_probs=71.6
Q ss_pred cCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEee--CCCeEEEEeccccccceeEeecCCCCceEeE
Q 038702 5 STDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTS--FDDTIGIWSGVNFENTAMIHHNNQTGRWISS 82 (154)
Q Consensus 5 ~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (154)
...+.|.+.++..... .............++++|...++.-.. ..+.|.-.++.............. ..
T Consensus 96 ~~~~~I~v~~~~g~~~----~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~-----~p 166 (266)
T d1ijqa1 96 SVLGTVSVADTKGVKR----KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ-----WP 166 (266)
T ss_dssp TTTTEEEEEETTSSSE----EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCS-----CE
T ss_pred cCCCEEEeEecCCceE----EEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccc-----ee
Confidence 3445677777654331 122224456678999998555444433 334565555554433333221111 12
Q ss_pred EEEEEcCCCcEEEEE-ccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 83 FRAIWGWDDSCIFIG-NMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 83 ~~~~~~~~~~~l~~~-~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
..++..+.+..|..+ ...+.|...++.................+..++... +.++.+-..++.|...+
T Consensus 167 ~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~--~~ly~td~~~~~I~~~~ 235 (266)
T d1ijqa1 167 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSAN 235 (266)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET--TEEEEEETTTTEEEEEE
T ss_pred eEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEEC--CEEEEEECCCCeEEEEE
Confidence 245667766655544 566788888886544333333332222334566653 45556555667776655
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=81.80 E-value=5.2 Score=26.40 Aligned_cols=60 Identities=12% Similarity=0.086 Sum_probs=37.5
Q ss_pred CcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEee
Q 038702 8 GTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHH 72 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~ 72 (154)
|.+.-+|+.+++. .-......+..+-.++-.+.++++++.||.++-+|.++++.+-.+..
T Consensus 438 G~l~A~D~~tGk~-----~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l 497 (560)
T d1kv9a2 438 GALLAWDPVKQKA-----AWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA 497 (560)
T ss_dssp EEEEEEETTTTEE-----EEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cceEEEeCCCCeE-----eeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEEC
Confidence 5566777777653 11112222222222333566788899999999999999998865543
|
| >d1c8ua2 d.38.1.3 (A:116-286) Thioesterase II (TesB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Thioesterase/thiol ester dehydrase-isomerase superfamily: Thioesterase/thiol ester dehydrase-isomerase family: Acyl-CoA thioesterase domain: Thioesterase II (TesB) species: Escherichia coli [TaxId: 562]
Probab=81.61 E-value=2.7 Score=22.88 Aligned_cols=24 Identities=4% Similarity=-0.071 Sum_probs=20.3
Q ss_pred EEEEcCCCcEEEEEccCCeEEEec
Q 038702 84 RAIWGWDDSCIFIGNMTRTVEVIS 107 (154)
Q Consensus 84 ~~~~~~~~~~l~~~~~d~~i~i~~ 107 (154)
.-.|+.+|.++++...+|.+|+.|
T Consensus 148 g~i~~~dG~LvAs~~QEgl~R~~~ 171 (171)
T d1c8ua2 148 GEFYTQDGVLVASTVQEGVMRNHN 171 (171)
T ss_dssp EEEEETTCCEEEEEEEEEEEEECC
T ss_pred EEEECCCCCEEEEEEEEEEEEecC
Confidence 346899999999999999999754
|